Query 043480
Match_columns 493
No_of_seqs 628 out of 2902
Neff 12.1
Searched_HMMs 46136
Date Fri Mar 29 05:30:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 5.8E-70 1.3E-74 531.0 61.9 470 5-489 366-861 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5.7E-69 1.2E-73 524.1 59.8 467 6-487 403-894 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 4.6E-68 1E-72 528.0 49.6 474 6-491 149-673 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 6.8E-66 1.5E-70 512.6 49.5 470 6-492 118-642 (857)
5 PLN03081 pentatricopeptide (PP 100.0 2.1E-64 4.6E-69 490.2 49.6 457 8-492 86-545 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.1E-63 2.5E-68 485.1 49.6 440 5-472 119-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 6.9E-32 1.5E-36 276.1 59.4 476 3-492 357-888 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-31 3.9E-36 273.0 61.2 473 4-490 324-819 (899)
9 PRK11447 cellulose synthase su 100.0 1.1E-23 2.4E-28 215.7 57.2 463 13-491 116-727 (1157)
10 PRK11447 cellulose synthase su 100.0 2.6E-23 5.7E-28 212.9 57.3 467 3-491 56-687 (1157)
11 KOG4626 O-linked N-acetylgluco 100.0 4E-24 8.7E-29 186.9 37.7 446 12-485 51-500 (966)
12 TIGR00990 3a0801s09 mitochondr 99.9 5.6E-21 1.2E-25 184.1 51.7 431 11-469 129-571 (615)
13 KOG4626 O-linked N-acetylgluco 99.9 1.3E-22 2.9E-27 177.6 33.9 419 6-451 79-501 (966)
14 PRK11788 tetratricopeptide rep 99.9 1.7E-22 3.7E-27 185.2 34.2 301 15-333 41-351 (389)
15 PRK11788 tetratricopeptide rep 99.9 2.5E-22 5.4E-27 184.1 33.9 303 132-441 42-354 (389)
16 PRK09782 bacteriophage N4 rece 99.9 2.9E-19 6.4E-24 175.4 52.8 204 279-491 490-693 (987)
17 PRK15174 Vi polysaccharide exp 99.9 7.2E-20 1.6E-24 175.7 44.7 334 12-365 45-382 (656)
18 PRK10049 pgaA outer membrane p 99.9 3.2E-19 7E-24 175.0 50.2 426 6-485 12-470 (765)
19 PRK10049 pgaA outer membrane p 99.9 3E-19 6.5E-24 175.2 49.6 378 5-434 45-456 (765)
20 PRK15174 Vi polysaccharide exp 99.9 2.2E-19 4.8E-24 172.4 46.1 362 18-399 14-381 (656)
21 PRK09782 bacteriophage N4 rece 99.9 2.9E-18 6.3E-23 168.5 53.0 442 8-469 180-706 (987)
22 TIGR00990 3a0801s09 mitochondr 99.9 4.2E-19 9.2E-24 171.1 46.2 403 6-434 157-571 (615)
23 PRK14574 hmsH outer membrane p 99.9 6.6E-18 1.4E-22 162.6 52.9 451 6-480 31-522 (822)
24 KOG2002 TPR-containing nuclear 99.9 8.3E-19 1.8E-23 161.8 42.9 448 3-470 264-746 (1018)
25 KOG2002 TPR-containing nuclear 99.9 3.8E-18 8.3E-23 157.5 43.0 412 61-492 253-733 (1018)
26 KOG1915 Cell cycle control pro 99.9 4.7E-16 1E-20 132.7 44.1 451 7-482 71-547 (677)
27 PRK14574 hmsH outer membrane p 99.9 4.8E-16 1E-20 149.9 49.4 425 44-491 34-500 (822)
28 KOG4422 Uncharacterized conser 99.9 3.9E-17 8.4E-22 137.4 34.7 369 3-400 201-591 (625)
29 KOG4422 Uncharacterized conser 99.8 2.5E-15 5.4E-20 126.7 42.6 442 9-484 116-605 (625)
30 KOG0495 HAT repeat protein [RN 99.8 5.9E-15 1.3E-19 131.0 45.6 431 22-468 389-879 (913)
31 KOG2003 TPR repeat-containing 99.8 4.3E-16 9.3E-21 132.4 34.4 460 10-490 202-709 (840)
32 KOG2076 RNA polymerase III tra 99.8 2.4E-14 5.2E-19 132.0 45.9 368 12-395 142-551 (895)
33 KOG0495 HAT repeat protein [RN 99.8 1.1E-13 2.4E-18 123.1 45.1 409 15-434 412-880 (913)
34 KOG2076 RNA polymerase III tra 99.8 6.4E-14 1.4E-18 129.2 42.8 323 1-326 165-552 (895)
35 KOG1915 Cell cycle control pro 99.8 4.8E-13 1E-17 114.7 44.9 438 5-469 103-585 (677)
36 KOG2003 TPR repeat-containing 99.8 8.6E-16 1.9E-20 130.6 27.6 422 13-455 241-709 (840)
37 KOG0547 Translocase of outer m 99.7 1.3E-13 2.7E-18 118.6 35.8 419 12-469 118-566 (606)
38 KOG1155 Anaphase-promoting com 99.7 1E-12 2.2E-17 112.4 40.5 312 167-488 234-553 (559)
39 KOG1173 Anaphase-promoting com 99.7 1.4E-12 3E-17 114.4 39.5 468 7-488 14-535 (611)
40 PF13429 TPR_15: Tetratricopep 99.7 4E-17 8.6E-22 141.6 11.2 270 3-291 3-274 (280)
41 KOG1155 Anaphase-promoting com 99.7 1.3E-12 2.9E-17 111.7 37.6 364 41-433 161-535 (559)
42 TIGR00540 hemY_coli hemY prote 99.7 1.5E-13 3.2E-18 125.6 32.6 294 137-468 96-398 (409)
43 PF13429 TPR_15: Tetratricopep 99.7 1.9E-16 4.2E-21 137.3 12.9 261 130-397 13-275 (280)
44 PRK10747 putative protoheme IX 99.7 3.8E-13 8.2E-18 122.1 34.3 252 206-468 129-389 (398)
45 PRK10747 putative protoheme IX 99.7 3.2E-13 7E-18 122.6 33.3 284 138-433 97-389 (398)
46 COG2956 Predicted N-acetylgluc 99.7 4.3E-13 9.3E-18 109.3 29.7 287 138-434 48-347 (389)
47 TIGR00540 hemY_coli hemY prote 99.7 3.6E-13 7.8E-18 123.0 33.2 287 56-362 96-397 (409)
48 COG2956 Predicted N-acetylgluc 99.7 2.4E-12 5.2E-17 105.0 29.9 285 107-399 52-347 (389)
49 COG3071 HemY Uncharacterized e 99.6 4E-12 8.7E-17 107.0 31.9 284 138-431 97-387 (400)
50 KOG1126 DNA-binding cell divis 99.6 1.8E-13 3.9E-18 122.3 25.2 198 160-365 421-621 (638)
51 COG3071 HemY Uncharacterized e 99.6 9E-12 2E-16 104.9 32.9 293 172-474 96-395 (400)
52 KOG1126 DNA-binding cell divis 99.6 2.4E-13 5.2E-18 121.5 24.6 285 174-470 333-621 (638)
53 KOG2047 mRNA splicing factor [ 99.6 5.6E-10 1.2E-14 99.9 45.0 448 9-468 102-650 (835)
54 KOG3785 Uncharacterized conser 99.6 7.7E-12 1.7E-16 103.5 27.9 446 16-480 29-499 (557)
55 KOG0547 Translocase of outer m 99.6 3.7E-11 8.1E-16 103.7 31.2 386 5-433 145-565 (606)
56 KOG1173 Anaphase-promoting com 99.6 9.4E-11 2E-15 103.2 34.1 435 7-451 47-533 (611)
57 KOG4318 Bicoid mRNA stability 99.6 2.2E-11 4.9E-16 112.5 30.9 218 4-242 20-283 (1088)
58 PF12569 NARP1: NMDA receptor- 99.5 2.4E-09 5.3E-14 98.3 42.6 301 11-328 6-333 (517)
59 KOG3785 Uncharacterized conser 99.5 3E-09 6.4E-14 88.5 38.2 391 15-434 63-490 (557)
60 KOG4162 Predicted calmodulin-b 99.5 4.8E-10 1E-14 102.5 36.6 439 3-469 317-783 (799)
61 KOG1156 N-terminal acetyltrans 99.5 6.5E-10 1.4E-14 99.6 36.1 438 4-467 36-509 (700)
62 KOG2376 Signal recognition par 99.5 2.1E-09 4.5E-14 95.4 37.9 445 12-490 15-507 (652)
63 KOG1156 N-terminal acetyltrans 99.5 6.9E-09 1.5E-13 93.2 41.2 436 10-471 8-470 (700)
64 KOG2047 mRNA splicing factor [ 99.5 1.8E-08 3.8E-13 90.6 42.8 454 4-468 22-578 (835)
65 KOG1174 Anaphase-promoting com 99.5 1.2E-08 2.5E-13 86.8 38.5 270 191-469 228-500 (564)
66 TIGR02521 type_IV_pilW type IV 99.5 3.2E-11 6.9E-16 102.4 24.5 200 44-258 31-231 (234)
67 PRK12370 invasion protein regu 99.5 9E-11 2E-15 111.6 29.2 278 41-330 253-536 (553)
68 PRK12370 invasion protein regu 99.5 8E-11 1.7E-15 111.9 28.3 251 209-470 275-536 (553)
69 KOG1129 TPR repeat-containing 99.5 1E-11 2.2E-16 101.6 18.4 229 13-258 227-457 (478)
70 TIGR02521 type_IV_pilW type IV 99.5 1.5E-10 3.2E-15 98.4 26.5 200 265-468 31-231 (234)
71 KOG4318 Bicoid mRNA stability 99.5 1.4E-11 3.1E-16 113.7 20.2 275 111-420 11-286 (1088)
72 KOG1129 TPR repeat-containing 99.4 3.1E-11 6.6E-16 98.9 18.8 230 234-469 227-458 (478)
73 KOG1840 Kinesin light chain [C 99.4 9.6E-11 2.1E-15 106.1 22.1 245 6-256 196-476 (508)
74 PF12569 NARP1: NMDA receptor- 99.4 3.8E-09 8.3E-14 97.1 32.2 292 132-432 11-332 (517)
75 KOG1914 mRNA cleavage and poly 99.4 1.6E-07 3.5E-12 82.9 42.0 435 2-469 13-501 (656)
76 KOG1840 Kinesin light chain [C 99.4 4.2E-10 9E-15 102.0 24.4 248 41-292 196-477 (508)
77 KOG4162 Predicted calmodulin-b 99.4 8.9E-08 1.9E-12 88.1 38.8 371 116-492 314-771 (799)
78 KOG1174 Anaphase-promoting com 99.4 4.3E-08 9.4E-13 83.5 33.3 408 7-444 95-509 (564)
79 PF13041 PPR_2: PPR repeat fam 99.3 5.7E-12 1.2E-16 76.3 6.5 48 403-450 1-48 (50)
80 COG3063 PilF Tfp pilus assembl 99.3 8.3E-09 1.8E-13 80.8 24.5 209 267-481 37-246 (250)
81 COG3063 PilF Tfp pilus assembl 99.3 4.6E-09 1E-13 82.2 23.0 195 49-258 40-235 (250)
82 PRK11189 lipoprotein NlpI; Pro 99.3 2.6E-09 5.6E-14 93.0 23.7 221 20-260 37-266 (296)
83 PF13041 PPR_2: PPR repeat fam 99.3 1.5E-11 3.2E-16 74.5 6.8 50 438-487 1-50 (50)
84 KOG2376 Signal recognition par 99.3 7.7E-07 1.7E-11 79.6 37.8 425 2-466 39-517 (652)
85 cd05804 StaR_like StaR_like; a 99.3 6.5E-08 1.4E-12 87.7 32.9 207 5-224 2-215 (355)
86 PRK11189 lipoprotein NlpI; Pro 99.3 1.5E-08 3.3E-13 88.2 26.6 223 55-297 37-268 (296)
87 KOG4340 Uncharacterized conser 99.2 7.8E-08 1.7E-12 78.3 26.5 195 12-227 13-210 (459)
88 cd05804 StaR_like StaR_like; a 99.2 4.3E-07 9.4E-12 82.4 34.8 199 270-469 119-336 (355)
89 KOG0985 Vesicle coat protein c 99.2 6.5E-07 1.4E-11 85.0 35.3 408 14-467 843-1306(1666)
90 KOG4340 Uncharacterized conser 99.2 5.6E-08 1.2E-12 79.1 24.2 295 125-431 10-336 (459)
91 KOG0548 Molecular co-chaperone 99.2 5.1E-07 1.1E-11 79.9 31.8 390 15-434 8-455 (539)
92 KOG1127 TPR repeat-containing 99.1 5.7E-06 1.2E-10 78.8 37.4 249 2-255 589-909 (1238)
93 KOG0624 dsRNA-activated protei 99.1 2.6E-06 5.5E-11 71.2 30.6 302 44-365 38-371 (504)
94 KOG3617 WD40 and TPR repeat-co 99.1 1E-05 2.2E-10 75.6 36.9 182 14-222 805-994 (1416)
95 KOG3616 Selective LIM binding 99.1 1.4E-06 2.9E-11 80.2 30.9 242 14-289 620-874 (1636)
96 KOG0548 Molecular co-chaperone 99.1 3.5E-06 7.5E-11 74.8 32.2 370 87-479 10-463 (539)
97 KOG1125 TPR repeat-containing 99.1 1.3E-07 2.8E-12 84.3 22.9 254 15-286 291-563 (579)
98 KOG1127 TPR repeat-containing 99.1 1.2E-06 2.7E-11 83.1 30.1 437 11-467 494-994 (1238)
99 PF04733 Coatomer_E: Coatomer 99.1 2E-08 4.2E-13 86.1 17.3 149 274-433 111-264 (290)
100 PRK04841 transcriptional regul 99.0 4.3E-06 9.3E-11 86.1 36.8 382 11-399 343-760 (903)
101 KOG1125 TPR repeat-containing 99.0 1.5E-07 3.3E-12 83.8 21.7 249 204-462 294-564 (579)
102 KOG0985 Vesicle coat protein c 99.0 2.8E-05 6.1E-10 74.4 38.7 161 300-490 1104-1264(1666)
103 PF04733 Coatomer_E: Coatomer 99.0 2.6E-08 5.6E-13 85.3 16.4 146 312-468 114-264 (290)
104 PRK04841 transcriptional regul 99.0 1E-05 2.3E-10 83.3 38.4 306 129-434 413-760 (903)
105 KOG0624 dsRNA-activated protei 99.0 9.1E-06 2E-10 68.0 33.8 301 124-434 37-370 (504)
106 KOG3616 Selective LIM binding 99.0 1.9E-05 4E-10 73.1 33.6 376 9-431 477-908 (1636)
107 KOG1070 rRNA processing protei 98.9 7.6E-07 1.6E-11 87.4 24.9 244 27-287 1443-1693(1710)
108 PLN02789 farnesyltranstransfer 98.9 1.7E-06 3.7E-11 75.3 24.7 218 10-242 38-267 (320)
109 KOG1070 rRNA processing protei 98.9 2.2E-06 4.9E-11 84.3 27.2 238 227-468 1455-1699(1710)
110 KOG2053 Mitochondrial inherita 98.9 6.8E-05 1.5E-09 71.0 44.8 208 3-225 37-256 (932)
111 KOG1128 Uncharacterized conser 98.9 1.2E-06 2.7E-11 80.4 23.1 232 232-484 400-632 (777)
112 KOG3617 WD40 and TPR repeat-co 98.9 1.4E-05 3.1E-10 74.7 29.5 267 43-362 725-994 (1416)
113 COG5010 TadD Flp pilus assembl 98.9 3.8E-07 8.3E-12 73.4 16.9 166 41-222 64-229 (257)
114 PLN02789 farnesyltranstransfer 98.8 1.3E-05 2.7E-10 69.9 27.2 217 244-466 51-299 (320)
115 TIGR03302 OM_YfiO outer membra 98.8 6.4E-07 1.4E-11 75.8 18.9 186 6-224 30-232 (235)
116 PRK10370 formate-dependent nit 98.8 1.9E-06 4.2E-11 69.7 20.6 125 348-476 52-179 (198)
117 KOG1128 Uncharacterized conser 98.8 9.2E-06 2E-10 74.9 25.9 220 158-398 396-615 (777)
118 PRK14720 transcript cleavage f 98.8 9.8E-06 2.1E-10 78.9 25.8 242 5-311 27-268 (906)
119 KOG3081 Vesicle coat complex C 98.8 2.7E-05 5.8E-10 63.0 23.7 137 308-455 116-256 (299)
120 COG5010 TadD Flp pilus assembl 98.7 7.7E-06 1.7E-10 66.0 20.3 157 306-466 72-228 (257)
121 PF12854 PPR_1: PPR repeat 98.7 2.1E-08 4.7E-13 54.2 3.8 31 436-466 3-33 (34)
122 KOG3081 Vesicle coat complex C 98.7 4E-05 8.8E-10 62.0 23.5 87 205-295 147-237 (299)
123 TIGR03302 OM_YfiO outer membra 98.7 6.4E-06 1.4E-10 69.7 20.7 60 410-469 171-232 (235)
124 KOG1914 mRNA cleavage and poly 98.7 0.00021 4.5E-09 64.0 38.5 173 316-490 309-487 (656)
125 PF12854 PPR_1: PPR repeat 98.7 3.5E-08 7.6E-13 53.3 4.1 33 399-431 1-33 (34)
126 PRK10370 formate-dependent nit 98.7 9.4E-07 2E-11 71.5 14.3 156 16-198 23-181 (198)
127 PRK15359 type III secretion sy 98.7 4E-06 8.6E-11 64.1 16.6 91 341-433 30-120 (144)
128 PRK15359 type III secretion sy 98.7 1.2E-06 2.7E-11 66.9 13.7 109 8-130 23-131 (144)
129 PRK14720 transcript cleavage f 98.7 4.5E-05 9.8E-10 74.5 26.9 238 123-416 29-268 (906)
130 KOG3060 Uncharacterized conser 98.6 5.7E-05 1.2E-09 60.7 22.3 189 242-434 24-220 (289)
131 PRK15179 Vi polysaccharide bio 98.6 4.2E-05 9.1E-10 73.9 26.0 132 299-433 85-216 (694)
132 PRK15179 Vi polysaccharide bio 98.6 5.2E-05 1.1E-09 73.2 25.5 147 121-272 82-229 (694)
133 COG4783 Putative Zn-dependent 98.6 0.00038 8.2E-09 61.8 28.0 159 308-487 314-474 (484)
134 TIGR02552 LcrH_SycD type III s 98.6 1.7E-06 3.6E-11 66.0 12.3 111 3-128 11-121 (135)
135 TIGR02552 LcrH_SycD type III s 98.6 5.5E-06 1.2E-10 63.1 14.8 98 370-469 17-114 (135)
136 COG5107 RNA14 Pre-mRNA 3'-end 98.5 0.00048 1E-08 60.4 38.0 462 1-490 34-550 (660)
137 KOG3060 Uncharacterized conser 98.4 0.0001 2.2E-09 59.3 19.0 115 107-224 103-220 (289)
138 COG4783 Putative Zn-dependent 98.4 0.00021 4.7E-09 63.2 21.6 130 107-258 323-453 (484)
139 PF09976 TPR_21: Tetratricopep 98.4 4.2E-05 9E-10 58.8 15.0 125 338-466 15-144 (145)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.7E-05 5.8E-10 69.4 14.5 121 50-188 175-296 (395)
141 KOG2053 Mitochondrial inherita 98.3 0.004 8.6E-08 59.7 43.8 422 19-469 19-536 (932)
142 PF09976 TPR_21: Tetratricopep 98.3 4.6E-05 9.9E-10 58.6 13.7 128 9-151 12-144 (145)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 8.7E-05 1.9E-09 66.2 16.9 117 309-431 178-294 (395)
144 PRK15363 pathogenicity island 98.2 6.4E-05 1.4E-09 56.6 12.0 88 12-101 38-125 (157)
145 TIGR00756 PPR pentatricopeptid 98.2 4E-06 8.7E-11 46.2 4.3 34 126-159 1-34 (35)
146 PRK02603 photosystem I assembl 98.2 8.3E-05 1.8E-09 59.2 13.4 112 6-118 32-148 (172)
147 PF13812 PPR_3: Pentatricopept 98.1 4.2E-06 9.1E-11 45.7 4.0 33 126-158 2-34 (34)
148 TIGR00756 PPR pentatricopeptid 98.1 4.9E-06 1.1E-10 45.8 4.4 31 408-438 3-33 (35)
149 KOG0550 Molecular chaperone (D 98.1 0.0047 1E-07 53.8 24.1 176 11-189 51-232 (486)
150 PRK10866 outer membrane biogen 98.1 0.0012 2.6E-08 55.5 19.8 187 8-222 31-239 (243)
151 PF13812 PPR_3: Pentatricopept 98.1 7.9E-06 1.7E-10 44.6 4.5 32 442-473 3-34 (34)
152 PF05843 Suf: Suppressor of fo 98.1 0.00013 2.8E-09 62.9 14.0 129 337-468 3-135 (280)
153 cd00189 TPR Tetratricopeptide 98.1 6.3E-05 1.4E-09 53.1 10.5 95 11-118 2-96 (100)
154 CHL00033 ycf3 photosystem I as 98.1 0.00015 3.2E-09 57.5 13.3 106 9-119 35-149 (168)
155 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00012 2.5E-09 54.3 12.0 99 9-119 2-105 (119)
156 PF10037 MRP-S27: Mitochondria 98.1 0.00012 2.6E-09 65.6 13.8 123 331-453 62-186 (429)
157 PF05843 Suf: Suppressor of fo 98.1 8E-05 1.7E-09 64.2 12.5 144 9-168 1-148 (280)
158 PF10037 MRP-S27: Mitochondria 98.0 0.00012 2.7E-09 65.5 13.2 124 260-383 61-186 (429)
159 PRK15363 pathogenicity island 98.0 0.0007 1.5E-08 51.1 14.5 89 379-469 44-132 (157)
160 PF14938 SNAP: Soluble NSF att 98.0 0.00049 1.1E-08 59.7 15.6 206 9-222 35-264 (282)
161 PLN03088 SGT1, suppressor of 98.0 0.00021 4.5E-09 64.1 13.3 94 13-119 6-99 (356)
162 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00055 1.2E-08 50.6 13.6 97 373-469 5-105 (119)
163 PF12895 Apc3: Anaphase-promot 97.9 1.9E-05 4.1E-10 54.1 5.1 81 383-465 2-83 (84)
164 PF13432 TPR_16: Tetratricopep 97.9 3.3E-05 7.1E-10 49.8 5.8 59 14-73 2-60 (65)
165 PLN03088 SGT1, suppressor of 97.9 0.00044 9.6E-09 62.0 14.7 91 342-434 9-99 (356)
166 PF13414 TPR_11: TPR repeat; P 97.9 2.6E-05 5.7E-10 51.0 5.3 65 8-73 2-67 (69)
167 PF12895 Apc3: Anaphase-promot 97.9 1.9E-05 4.2E-10 54.0 4.7 80 22-103 2-82 (84)
168 PF14559 TPR_19: Tetratricopep 97.9 4.1E-05 9E-10 49.9 6.1 64 19-85 1-64 (68)
169 PF07079 DUF1347: Protein of u 97.9 0.014 3.1E-07 51.6 40.3 438 18-482 15-532 (549)
170 cd00189 TPR Tetratricopeptide 97.9 0.00032 6.9E-09 49.4 11.3 90 376-467 6-95 (100)
171 PF14938 SNAP: Soluble NSF att 97.9 0.0065 1.4E-07 52.8 21.0 90 274-363 123-224 (282)
172 KOG0553 TPR repeat-containing 97.9 0.00024 5.3E-09 58.9 11.3 94 345-443 91-185 (304)
173 COG4235 Cytochrome c biogenesi 97.9 0.0011 2.5E-08 55.3 15.2 101 367-469 153-256 (287)
174 PF04840 Vps16_C: Vps16, C-ter 97.9 0.015 3.2E-07 51.0 29.3 105 233-357 180-284 (319)
175 PF08579 RPM2: Mitochondrial r 97.9 0.00034 7.3E-09 48.8 9.8 74 343-416 33-115 (120)
176 PRK10153 DNA-binding transcrip 97.9 0.0023 5.1E-08 60.1 18.6 136 331-469 333-482 (517)
177 COG4235 Cytochrome c biogenesi 97.8 0.00095 2.1E-08 55.8 14.1 120 25-155 138-257 (287)
178 PF01535 PPR: PPR repeat; Int 97.8 3.1E-05 6.7E-10 41.1 3.6 31 126-156 1-31 (31)
179 PF08579 RPM2: Mitochondrial r 97.8 0.00059 1.3E-08 47.6 10.4 88 47-137 28-116 (120)
180 PRK10866 outer membrane biogen 97.8 0.014 3.1E-07 49.1 20.6 58 410-467 180-239 (243)
181 CHL00033 ycf3 photosystem I as 97.8 0.00093 2E-08 53.0 13.0 95 370-466 35-139 (168)
182 PRK10153 DNA-binding transcrip 97.8 0.0013 2.7E-08 61.8 15.7 141 40-190 333-483 (517)
183 PRK02603 photosystem I assembl 97.8 0.0026 5.5E-08 50.6 15.3 83 337-420 37-121 (172)
184 PF01535 PPR: PPR repeat; Int 97.8 3.9E-05 8.4E-10 40.7 3.4 29 442-470 2-30 (31)
185 KOG0553 TPR repeat-containing 97.8 0.00037 8.1E-09 57.8 10.3 102 16-132 88-189 (304)
186 PF14559 TPR_19: Tetratricopep 97.7 0.00021 4.6E-09 46.5 7.1 63 416-481 2-64 (68)
187 PF04840 Vps16_C: Vps16, C-ter 97.7 0.029 6.4E-07 49.1 24.8 110 336-465 178-287 (319)
188 COG4700 Uncharacterized protei 97.7 0.016 3.5E-07 44.7 17.7 132 41-185 86-218 (251)
189 PF12688 TPR_5: Tetratrico pep 97.6 0.0038 8.2E-08 45.5 13.0 107 131-241 7-117 (120)
190 PF13432 TPR_16: Tetratricopep 97.6 0.00036 7.7E-09 44.9 7.1 57 412-469 4-60 (65)
191 PF06239 ECSIT: Evolutionarily 97.6 0.0021 4.5E-08 51.1 12.3 86 334-419 46-152 (228)
192 KOG2041 WD40 repeat protein [G 97.6 0.063 1.4E-06 50.5 26.4 195 5-222 688-905 (1189)
193 PF13371 TPR_9: Tetratricopept 97.6 0.00042 9E-09 45.9 6.9 58 16-74 2-59 (73)
194 KOG1130 Predicted G-alpha GTPa 97.6 0.0027 5.9E-08 55.2 13.2 271 16-293 24-343 (639)
195 PF12688 TPR_5: Tetratrico pep 97.5 0.0035 7.6E-08 45.6 11.7 87 11-99 3-95 (120)
196 PF13414 TPR_11: TPR repeat; P 97.5 0.00055 1.2E-08 44.7 7.0 64 404-468 2-66 (69)
197 KOG2796 Uncharacterized conser 97.5 0.039 8.4E-07 45.3 19.4 133 302-435 179-316 (366)
198 KOG1538 Uncharacterized conser 97.5 0.055 1.2E-06 50.3 21.0 103 316-433 732-845 (1081)
199 PF13525 YfiO: Outer membrane 97.5 0.026 5.6E-07 46.2 17.6 66 8-74 4-72 (203)
200 KOG0550 Molecular chaperone (D 97.4 0.071 1.5E-06 46.9 20.2 155 273-434 177-350 (486)
201 COG3898 Uncharacterized membra 97.4 0.084 1.8E-06 46.1 25.7 257 16-298 127-396 (531)
202 PRK15331 chaperone protein Sic 97.4 0.0051 1.1E-07 46.8 10.9 83 15-99 43-125 (165)
203 PF06239 ECSIT: Evolutionarily 97.3 0.01 2.2E-07 47.3 12.8 37 245-281 118-154 (228)
204 PRK10803 tol-pal system protei 97.3 0.0067 1.4E-07 51.5 12.4 99 9-119 143-246 (263)
205 PF03704 BTAD: Bacterial trans 97.3 0.0049 1.1E-07 47.5 10.4 73 407-480 64-141 (146)
206 PRK10803 tol-pal system protei 97.2 0.014 3.1E-07 49.5 13.8 96 372-469 145-246 (263)
207 PF03704 BTAD: Bacterial trans 97.2 0.0012 2.6E-08 50.9 6.9 70 11-81 64-138 (146)
208 KOG2796 Uncharacterized conser 97.2 0.096 2.1E-06 43.1 22.4 142 267-411 179-325 (366)
209 PF13371 TPR_9: Tetratricopept 97.2 0.004 8.6E-08 41.1 7.9 55 414-469 4-58 (73)
210 KOG1538 Uncharacterized conser 97.1 0.18 3.8E-06 47.2 20.1 264 11-329 558-846 (1081)
211 COG4700 Uncharacterized protei 97.1 0.078 1.7E-06 41.1 19.3 129 332-464 86-217 (251)
212 PF12921 ATP13: Mitochondrial 97.1 0.015 3.2E-07 42.9 11.2 84 369-452 1-100 (126)
213 PF13525 YfiO: Outer membrane 97.1 0.11 2.3E-06 42.6 18.7 49 411-459 147-197 (203)
214 KOG1258 mRNA processing protei 97.1 0.24 5.2E-06 46.1 33.5 132 10-154 46-180 (577)
215 KOG1130 Predicted G-alpha GTPa 97.1 0.0065 1.4E-07 53.0 10.3 133 337-469 197-344 (639)
216 PF13424 TPR_12: Tetratricopep 97.1 0.00055 1.2E-08 46.0 3.2 65 7-71 3-73 (78)
217 PF13428 TPR_14: Tetratricopep 97.1 0.0015 3.2E-08 37.9 4.5 42 9-51 1-42 (44)
218 KOG2280 Vacuolar assembly/sort 97.1 0.3 6.5E-06 46.6 32.6 113 333-464 682-794 (829)
219 KOG2041 WD40 repeat protein [G 97.0 0.33 7.1E-06 46.0 28.1 212 41-288 689-901 (1189)
220 PF07079 DUF1347: Protein of u 96.9 0.29 6.3E-06 43.9 38.8 411 11-445 48-530 (549)
221 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.005 1.1E-07 55.1 8.2 69 4-73 70-141 (453)
222 PF13424 TPR_12: Tetratricopep 96.8 0.0074 1.6E-07 40.4 6.9 63 406-468 6-74 (78)
223 PRK15331 chaperone protein Sic 96.8 0.15 3.2E-06 39.1 15.0 88 344-433 46-133 (165)
224 PF12921 ATP13: Mitochondrial 96.7 0.046 1E-06 40.3 10.8 82 336-417 3-100 (126)
225 PF13281 DUF4071: Domain of un 96.7 0.42 9.1E-06 42.6 20.7 78 198-275 144-227 (374)
226 PF09205 DUF1955: Domain of un 96.7 0.14 2.9E-06 37.3 12.3 139 312-472 14-152 (161)
227 PF09205 DUF1955: Domain of un 96.6 0.16 3.5E-06 36.9 13.3 56 344-400 95-150 (161)
228 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.5 1.1E-05 42.4 33.4 115 371-489 398-516 (660)
229 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.028 6.1E-07 50.5 10.6 99 367-471 72-176 (453)
230 COG3898 Uncharacterized membra 96.6 0.45 9.8E-06 41.8 31.4 116 21-154 96-217 (531)
231 KOG1585 Protein required for f 96.6 0.3 6.6E-06 39.9 15.0 91 163-254 153-251 (308)
232 KOG1258 mRNA processing protei 96.5 0.76 1.6E-05 42.9 31.4 381 5-419 75-489 (577)
233 PF08631 SPO22: Meiosis protei 96.5 0.53 1.1E-05 40.9 24.1 127 19-154 3-150 (278)
234 KOG1941 Acetylcholine receptor 96.4 0.29 6.3E-06 42.4 15.0 232 55-293 17-274 (518)
235 COG4105 ComL DNA uptake lipopr 96.4 0.45 9.7E-06 39.5 18.7 80 10-91 36-118 (254)
236 PF10300 DUF3808: Protein of u 96.4 0.3 6.5E-06 45.9 16.6 40 448-487 423-465 (468)
237 KOG4555 TPR repeat-containing 96.4 0.16 3.5E-06 36.8 11.2 87 15-102 49-138 (175)
238 PF13281 DUF4071: Domain of un 96.4 0.68 1.5E-05 41.3 21.4 27 443-469 308-334 (374)
239 KOG0543 FKBP-type peptidyl-pro 96.2 0.23 5E-06 43.9 13.8 97 125-223 257-354 (397)
240 KOG2396 HAT (Half-A-TPR) repea 96.2 0.96 2.1E-05 41.3 37.2 427 3-468 99-558 (568)
241 COG1729 Uncharacterized protei 96.1 0.22 4.8E-06 41.6 12.6 97 372-469 144-244 (262)
242 KOG1585 Protein required for f 96.1 0.6 1.3E-05 38.2 16.4 208 45-289 32-251 (308)
243 KOG0543 FKBP-type peptidyl-pro 96.0 0.11 2.4E-06 45.7 10.7 79 16-95 215-307 (397)
244 COG4785 NlpI Lipoprotein NlpI, 96.0 0.38 8.3E-06 38.5 12.5 165 5-190 95-267 (297)
245 COG1729 Uncharacterized protei 95.9 0.21 4.6E-06 41.7 11.4 91 11-103 144-239 (262)
246 KOG2610 Uncharacterized conser 95.8 0.42 9E-06 41.1 12.9 153 242-397 115-274 (491)
247 PRK11906 transcriptional regul 95.8 1.2 2.5E-05 40.7 16.5 152 60-222 274-434 (458)
248 PF04053 Coatomer_WDAD: Coatom 95.8 0.38 8.3E-06 44.5 14.0 57 159-224 346-402 (443)
249 PF04053 Coatomer_WDAD: Coatom 95.8 0.36 7.7E-06 44.7 13.7 82 334-430 346-427 (443)
250 PF13512 TPR_18: Tetratricopep 95.8 0.31 6.8E-06 36.4 10.8 83 8-91 9-94 (142)
251 COG3629 DnrI DNA-binding trans 95.8 0.098 2.1E-06 44.3 9.2 78 10-88 154-236 (280)
252 PRK11906 transcriptional regul 95.7 0.83 1.8E-05 41.6 15.2 159 304-468 257-435 (458)
253 KOG2114 Vacuolar assembly/sort 95.7 2.3 5E-05 41.6 27.9 180 13-222 338-517 (933)
254 PF13428 TPR_14: Tetratricopep 95.7 0.024 5.2E-07 32.7 3.9 41 45-86 2-42 (44)
255 KOG4555 TPR repeat-containing 95.7 0.36 7.7E-06 35.1 10.3 52 381-433 54-105 (175)
256 PF13170 DUF4003: Protein of u 95.7 1.3 2.9E-05 38.6 16.4 133 28-169 81-226 (297)
257 COG3629 DnrI DNA-binding trans 95.7 0.2 4.2E-06 42.6 10.6 79 370-449 153-236 (280)
258 COG3118 Thioredoxin domain-con 95.6 1.3 2.8E-05 37.7 17.4 144 168-314 142-286 (304)
259 PF13431 TPR_17: Tetratricopep 95.5 0.012 2.5E-07 31.7 1.9 28 2-29 6-33 (34)
260 KOG2610 Uncharacterized conser 95.5 0.68 1.5E-05 39.9 12.9 154 276-432 114-274 (491)
261 smart00299 CLH Clathrin heavy 95.4 0.83 1.8E-05 34.7 15.5 124 340-486 12-136 (140)
262 PF10300 DUF3808: Protein of u 95.3 2.6 5.6E-05 39.8 24.7 36 340-376 310-345 (468)
263 PF13512 TPR_18: Tetratricopep 95.3 0.59 1.3E-05 35.0 10.8 83 45-138 11-95 (142)
264 PF13431 TPR_17: Tetratricopep 95.1 0.022 4.9E-07 30.6 2.3 32 32-64 2-33 (34)
265 PF08631 SPO22: Meiosis protei 95.1 2 4.3E-05 37.3 25.4 20 448-467 254-273 (278)
266 COG3118 Thioredoxin domain-con 95.1 1.9 4.1E-05 36.7 17.4 141 310-454 144-286 (304)
267 PF13176 TPR_7: Tetratricopept 95.1 0.057 1.2E-06 29.5 3.9 26 11-36 1-26 (36)
268 KOG2114 Vacuolar assembly/sort 95.0 3.9 8.4E-05 40.2 23.1 145 12-187 371-517 (933)
269 COG4105 ComL DNA uptake lipopr 94.9 1.9 4.1E-05 35.9 20.8 70 242-311 46-117 (254)
270 KOG1941 Acetylcholine receptor 94.9 1.4 3.1E-05 38.4 13.2 24 443-466 249-272 (518)
271 PF06552 TOM20_plant: Plant sp 94.8 0.73 1.6E-05 35.9 10.4 116 25-155 7-137 (186)
272 PF09613 HrpB1_HrpK: Bacterial 94.8 1.4 3E-05 33.8 13.3 52 347-399 22-73 (160)
273 PF04097 Nic96: Nup93/Nic96; 94.8 4.6 0.0001 39.7 21.1 71 8-80 111-188 (613)
274 KOG3941 Intermediate in Toll s 94.7 0.39 8.5E-06 40.2 9.3 103 299-420 66-173 (406)
275 PF09613 HrpB1_HrpK: Bacterial 94.7 1.5 3.2E-05 33.7 12.5 86 7-95 5-94 (160)
276 smart00299 CLH Clathrin heavy 94.4 1.6 3.5E-05 33.1 15.8 125 304-451 11-136 (140)
277 KOG3941 Intermediate in Toll s 94.4 0.89 1.9E-05 38.2 10.7 106 158-282 65-175 (406)
278 PF08424 NRDE-2: NRDE-2, neces 94.3 2.6 5.6E-05 37.5 14.6 88 2-91 12-111 (321)
279 PF13176 TPR_7: Tetratricopept 94.3 0.13 2.9E-06 28.0 4.1 27 442-468 1-27 (36)
280 TIGR02561 HrpB1_HrpK type III 93.9 2.1 4.5E-05 32.3 13.0 67 7-74 5-74 (153)
281 PF10602 RPN7: 26S proteasome 93.9 0.9 1.9E-05 36.1 9.8 64 10-73 37-102 (177)
282 PF07719 TPR_2: Tetratricopept 93.8 0.17 3.6E-06 27.0 4.0 30 10-39 2-31 (34)
283 PF07035 Mic1: Colon cancer-as 93.7 2.7 5.8E-05 32.8 15.3 134 109-258 13-148 (167)
284 PF00515 TPR_1: Tetratricopept 93.6 0.18 3.9E-06 26.9 3.9 30 10-39 2-31 (34)
285 PF04184 ST7: ST7 protein; In 93.6 6.1 0.00013 36.5 17.8 59 340-398 264-323 (539)
286 COG0457 NrfG FOG: TPR repeat [ 93.6 3.8 8.3E-05 34.2 29.6 199 267-469 61-265 (291)
287 PF07035 Mic1: Colon cancer-as 93.5 2.9 6.3E-05 32.6 15.1 133 216-362 15-147 (167)
288 KOG4648 Uncharacterized conser 93.2 0.26 5.6E-06 42.4 5.9 57 16-73 104-160 (536)
289 KOG1920 IkappaB kinase complex 93.2 12 0.00026 38.7 24.0 104 343-466 947-1052(1265)
290 cd00923 Cyt_c_Oxidase_Va Cytoc 93.1 1.3 2.9E-05 30.3 7.8 45 388-432 25-69 (103)
291 PF04184 ST7: ST7 protein; In 92.7 8.3 0.00018 35.7 17.6 83 372-454 261-345 (539)
292 KOG2280 Vacuolar assembly/sort 92.7 11 0.00023 36.9 31.2 319 135-467 399-771 (829)
293 PF02284 COX5A: Cytochrome c o 92.7 1.6 3.4E-05 30.3 7.8 46 388-433 28-73 (108)
294 KOG1920 IkappaB kinase complex 92.7 14 0.0003 38.2 28.1 131 14-153 682-820 (1265)
295 PF13170 DUF4003: Protein of u 92.6 6.6 0.00014 34.3 20.6 128 318-447 80-224 (297)
296 TIGR03504 FimV_Cterm FimV C-te 92.5 0.27 5.8E-06 28.2 3.6 26 14-39 4-29 (44)
297 KOG4570 Uncharacterized conser 92.5 3.6 7.8E-05 35.3 11.3 104 191-296 60-166 (418)
298 PF07721 TPR_4: Tetratricopept 92.1 0.25 5.4E-06 24.5 2.8 23 11-33 3-25 (26)
299 PF02259 FAT: FAT domain; Int 91.9 9.4 0.0002 34.5 22.2 192 15-223 4-212 (352)
300 cd00923 Cyt_c_Oxidase_Va Cytoc 91.9 1.6 3.6E-05 29.9 7.1 62 422-484 24-85 (103)
301 PF10602 RPN7: 26S proteasome 91.8 2 4.2E-05 34.2 9.0 96 371-466 37-139 (177)
302 COG4649 Uncharacterized protei 91.7 5.2 0.00011 31.1 14.8 133 10-154 60-196 (221)
303 KOG1550 Extracellular protein 91.7 14 0.0003 36.0 19.0 152 246-400 228-394 (552)
304 PF07719 TPR_2: Tetratricopept 91.7 0.71 1.5E-05 24.4 4.6 27 442-468 3-29 (34)
305 COG4649 Uncharacterized protei 91.6 5.4 0.00012 31.1 13.4 52 242-293 144-195 (221)
306 KOG4570 Uncharacterized conser 91.5 5.6 0.00012 34.3 11.4 98 334-433 63-163 (418)
307 COG0457 NrfG FOG: TPR repeat [ 91.5 7.4 0.00016 32.4 29.2 86 345-433 177-264 (291)
308 PF00515 TPR_1: Tetratricopept 91.3 0.82 1.8E-05 24.2 4.6 27 442-468 3-29 (34)
309 PF13374 TPR_10: Tetratricopep 91.1 0.56 1.2E-05 26.3 4.1 28 10-37 3-30 (42)
310 PF02284 COX5A: Cytochrome c o 91.0 3.9 8.5E-05 28.5 8.7 47 423-469 28-74 (108)
311 PRK15180 Vi polysaccharide bio 91.0 3.7 8.1E-05 37.5 10.5 124 307-434 296-420 (831)
312 COG4455 ImpE Protein of avirul 91.0 2.3 5E-05 34.4 8.3 77 372-449 3-81 (273)
313 PRK11619 lytic murein transgly 90.8 18 0.0004 35.8 34.0 118 137-257 253-373 (644)
314 COG3947 Response regulator con 90.5 10 0.00022 32.4 16.0 70 408-478 282-356 (361)
315 PF13374 TPR_10: Tetratricopep 90.4 0.88 1.9E-05 25.5 4.5 30 440-469 2-31 (42)
316 PF02259 FAT: FAT domain; Int 90.1 14 0.00031 33.4 22.5 63 301-363 147-212 (352)
317 TIGR03504 FimV_Cterm FimV C-te 89.9 0.69 1.5E-05 26.5 3.5 23 446-468 5-27 (44)
318 PF06552 TOM20_plant: Plant sp 89.9 3.9 8.4E-05 32.1 8.5 115 60-189 7-136 (186)
319 PF11207 DUF2989: Protein of u 89.6 9.5 0.00021 30.7 11.6 73 142-215 123-198 (203)
320 COG4785 NlpI Lipoprotein NlpI, 89.5 10 0.00022 30.9 16.7 29 441-469 238-266 (297)
321 PF13181 TPR_8: Tetratricopept 89.3 1 2.3E-05 23.8 4.0 29 10-38 2-30 (34)
322 TIGR02561 HrpB1_HrpK type III 88.9 8.6 0.00019 29.2 11.7 19 381-399 55-73 (153)
323 KOG1550 Extracellular protein 88.5 26 0.00056 34.2 25.9 274 176-470 228-539 (552)
324 PF14561 TPR_20: Tetratricopep 88.3 4.1 9E-05 28.0 7.1 34 5-38 18-51 (90)
325 KOG4234 TPR repeat-containing 88.1 12 0.00026 30.0 10.1 90 16-118 102-196 (271)
326 PRK09687 putative lyase; Provi 88.0 17 0.00037 31.6 28.5 137 334-486 141-278 (280)
327 PF13181 TPR_8: Tetratricopept 88.0 1.8 4E-05 22.8 4.4 29 441-469 2-30 (34)
328 PF11207 DUF2989: Protein of u 87.8 12 0.00026 30.2 10.2 73 387-460 123-198 (203)
329 KOG0276 Vesicle coat complex C 87.6 25 0.00054 33.6 13.4 148 208-395 599-746 (794)
330 PF13174 TPR_6: Tetratricopept 87.6 0.98 2.1E-05 23.6 3.1 23 446-468 6-28 (33)
331 COG4455 ImpE Protein of avirul 87.6 3.7 8.1E-05 33.2 7.2 78 12-90 4-83 (273)
332 PF13174 TPR_6: Tetratricopept 87.0 1.1 2.4E-05 23.3 3.1 27 12-38 3-29 (33)
333 KOG4648 Uncharacterized conser 86.0 5.7 0.00012 34.6 8.0 94 51-159 104-197 (536)
334 KOG0276 Vesicle coat complex C 85.7 20 0.00044 34.2 11.8 134 266-432 615-748 (794)
335 KOG4234 TPR repeat-containing 85.7 17 0.00037 29.2 10.9 88 344-434 104-197 (271)
336 KOG4077 Cytochrome c oxidase, 85.5 9.6 0.00021 27.8 7.7 46 388-433 67-112 (149)
337 PF10345 Cohesin_load: Cohesin 85.1 42 0.00092 33.3 38.1 189 26-222 38-252 (608)
338 COG2909 MalT ATP-dependent tra 85.0 46 0.001 33.6 26.4 195 275-469 425-647 (894)
339 PF13929 mRNA_stabil: mRNA sta 84.8 25 0.00053 30.3 15.9 115 316-430 144-263 (292)
340 PRK09687 putative lyase; Provi 84.7 26 0.00056 30.5 27.2 28 124-151 67-98 (280)
341 PF00637 Clathrin: Region in C 84.7 0.37 8.1E-06 36.8 0.6 129 341-491 13-141 (143)
342 KOG2063 Vacuolar assembly/sort 84.5 51 0.0011 33.7 16.3 37 135-171 601-637 (877)
343 smart00028 TPR Tetratricopepti 83.1 2.7 5.8E-05 21.2 3.6 28 11-38 3-30 (34)
344 PF07163 Pex26: Pex26 protein; 82.7 21 0.00045 30.5 9.7 86 201-288 89-181 (309)
345 KOG4642 Chaperone-dependent E3 82.6 19 0.00042 29.9 9.2 118 345-466 20-143 (284)
346 PF00637 Clathrin: Region in C 82.5 0.97 2.1E-05 34.5 2.1 84 131-221 13-96 (143)
347 KOG4077 Cytochrome c oxidase, 82.0 12 0.00026 27.4 7.0 46 424-469 68-113 (149)
348 COG3947 Response regulator con 82.0 32 0.0007 29.6 16.3 71 372-443 281-356 (361)
349 PF11848 DUF3368: Domain of un 82.0 7.2 0.00016 22.9 5.1 34 450-483 12-45 (48)
350 PF10579 Rapsyn_N: Rapsyn N-te 81.7 5.2 0.00011 26.4 4.8 46 417-462 18-65 (80)
351 PF04097 Nic96: Nup93/Nic96; 81.6 59 0.0013 32.3 25.8 88 202-294 265-356 (613)
352 KOG0890 Protein kinase of the 81.5 1.1E+02 0.0023 35.2 25.2 317 14-365 1388-1732(2382)
353 COG2909 MalT ATP-dependent tra 81.3 65 0.0014 32.6 27.3 222 206-430 426-684 (894)
354 PRK10941 hypothetical protein; 81.1 31 0.00067 29.7 10.6 78 409-488 185-264 (269)
355 PRK15180 Vi polysaccharide bio 80.7 49 0.0011 30.8 30.8 126 16-155 296-421 (831)
356 KOG2066 Vacuolar assembly/sort 80.3 66 0.0014 32.0 27.2 103 16-137 363-467 (846)
357 PRK10941 hypothetical protein; 79.9 23 0.00049 30.5 9.5 61 12-73 184-244 (269)
358 PF14853 Fis1_TPR_C: Fis1 C-te 79.7 11 0.00024 22.7 6.2 36 446-483 7-42 (53)
359 COG5191 Uncharacterized conser 79.6 6.8 0.00015 33.7 6.0 82 3-86 101-183 (435)
360 COG2976 Uncharacterized protei 79.2 31 0.00068 27.7 14.8 90 376-470 95-189 (207)
361 KOG2471 TPR repeat-containing 79.0 57 0.0012 30.5 14.1 40 56-95 29-68 (696)
362 PF07163 Pex26: Pex26 protein; 77.8 44 0.00096 28.6 12.3 126 12-148 38-181 (309)
363 cd00280 TRFH Telomeric Repeat 77.5 15 0.00032 29.1 6.8 67 25-94 85-158 (200)
364 COG4976 Predicted methyltransf 76.9 21 0.00045 29.5 7.7 57 17-74 3-59 (287)
365 PRK11619 lytic murein transgly 76.6 86 0.0019 31.3 40.5 145 303-464 315-463 (644)
366 PF07575 Nucleopor_Nup85: Nup8 75.8 85 0.0018 30.9 20.1 75 286-362 391-465 (566)
367 KOG3364 Membrane protein invol 75.5 31 0.00068 25.8 9.7 22 412-433 78-99 (149)
368 PF13929 mRNA_stabil: mRNA sta 75.4 53 0.0012 28.4 20.7 63 192-254 199-262 (292)
369 KOG4507 Uncharacterized conser 74.2 15 0.00033 34.8 7.2 98 348-447 620-717 (886)
370 smart00386 HAT HAT (Half-A-TPR 73.3 8.3 0.00018 19.7 3.6 29 23-52 1-29 (33)
371 COG1747 Uncharacterized N-term 73.1 85 0.0019 29.7 24.8 181 192-380 63-249 (711)
372 KOG0376 Serine-threonine phosp 71.7 11 0.00024 34.7 5.7 106 15-135 10-115 (476)
373 PF10345 Cohesin_load: Cohesin 70.6 1.2E+02 0.0026 30.3 35.8 184 107-291 38-251 (608)
374 PF07575 Nucleopor_Nup85: Nup8 70.6 1.1E+02 0.0024 30.0 12.9 28 159-186 404-431 (566)
375 PF11846 DUF3366: Domain of un 70.6 29 0.00063 28.1 7.7 32 437-468 141-172 (193)
376 KOG1464 COP9 signalosome, subu 70.0 69 0.0015 27.3 17.6 183 243-426 40-252 (440)
377 PF10579 Rapsyn_N: Rapsyn N-te 68.9 20 0.00043 23.8 4.9 47 382-428 18-66 (80)
378 KOG0128 RNA-binding protein SA 68.6 1.4E+02 0.003 30.2 36.4 203 41-257 110-339 (881)
379 KOG4642 Chaperone-dependent E3 67.2 75 0.0016 26.7 10.7 118 310-431 20-143 (284)
380 PF09670 Cas_Cas02710: CRISPR- 66.9 1.1E+02 0.0023 28.3 12.0 55 309-364 140-198 (379)
381 PF11663 Toxin_YhaV: Toxin wit 66.6 6.6 0.00014 29.0 2.7 30 453-484 108-137 (140)
382 COG0735 Fur Fe2+/Zn2+ uptake r 66.6 48 0.001 25.4 7.6 60 359-419 10-69 (145)
383 KOG4507 Uncharacterized conser 66.4 55 0.0012 31.4 9.0 86 278-364 620-705 (886)
384 COG5108 RPO41 Mitochondrial DN 66.2 1.4E+02 0.003 29.4 11.5 75 14-91 33-115 (1117)
385 COG1747 Uncharacterized N-term 66.2 1.2E+02 0.0026 28.7 25.0 181 157-345 63-249 (711)
386 PRK10564 maltose regulon perip 65.9 20 0.00043 31.1 5.8 35 444-478 261-295 (303)
387 PF14689 SPOB_a: Sensor_kinase 65.9 20 0.00043 22.5 4.5 30 439-468 22-51 (62)
388 PF09454 Vps23_core: Vps23 cor 65.9 23 0.0005 22.5 4.7 49 7-56 6-54 (65)
389 PF08424 NRDE-2: NRDE-2, neces 64.7 1.1E+02 0.0023 27.5 17.9 118 317-436 48-185 (321)
390 PF12862 Apc5: Anaphase-promot 64.5 45 0.00097 23.1 6.7 57 90-153 9-69 (94)
391 PF10366 Vps39_1: Vacuolar sor 64.4 23 0.0005 25.4 5.1 27 46-72 41-67 (108)
392 PF09986 DUF2225: Uncharacteri 64.2 83 0.0018 26.1 11.5 30 441-470 166-195 (214)
393 PF09986 DUF2225: Uncharacteri 64.0 84 0.0018 26.1 11.0 71 81-155 120-195 (214)
394 cd08819 CARD_MDA5_2 Caspase ac 63.9 43 0.00094 22.8 6.3 64 28-97 21-84 (88)
395 KOG0991 Replication factor C, 63.5 88 0.0019 26.2 16.4 102 310-415 169-282 (333)
396 PF10475 DUF2450: Protein of u 63.2 1.1E+02 0.0023 27.0 11.4 21 159-179 196-216 (291)
397 PF10255 Paf67: RNA polymerase 63.0 49 0.0011 30.5 8.0 69 80-152 123-191 (404)
398 PF14853 Fis1_TPR_C: Fis1 C-te 62.8 32 0.00068 20.8 4.9 27 411-439 7-33 (53)
399 COG0735 Fur Fe2+/Zn2+ uptake r 62.6 48 0.001 25.4 6.9 63 31-94 8-70 (145)
400 PHA02875 ankyrin repeat protei 62.2 1.4E+02 0.003 27.9 12.0 17 132-148 72-88 (413)
401 KOG0376 Serine-threonine phosp 62.1 23 0.00049 32.8 5.7 99 346-450 15-115 (476)
402 cd00280 TRFH Telomeric Repeat 61.1 74 0.0016 25.4 7.5 67 386-455 85-158 (200)
403 KOG0686 COP9 signalosome, subu 61.1 1.3E+02 0.0029 27.5 14.1 62 162-223 152-215 (466)
404 PF07678 A2M_comp: A-macroglob 60.9 75 0.0016 27.0 8.6 93 386-480 115-237 (246)
405 KOG1308 Hsp70-interacting prot 60.6 8.3 0.00018 33.8 2.7 94 19-126 124-218 (377)
406 KOG1586 Protein required for f 60.5 1E+02 0.0022 25.9 18.6 14 57-70 27-40 (288)
407 PF14689 SPOB_a: Sensor_kinase 60.4 27 0.00059 21.9 4.4 21 236-256 29-49 (62)
408 PF02184 HAT: HAT (Half-A-TPR) 59.6 25 0.00054 18.5 3.3 26 24-51 2-27 (32)
409 KOG0890 Protein kinase of the 58.6 3.6E+02 0.0077 31.6 34.1 151 130-288 1388-1541(2382)
410 PF11663 Toxin_YhaV: Toxin wit 58.6 12 0.00026 27.7 2.8 32 56-89 107-138 (140)
411 KOG1586 Protein required for f 58.5 1.1E+02 0.0024 25.7 20.3 55 380-434 164-224 (288)
412 KOG0686 COP9 signalosome, subu 58.4 1.5E+02 0.0033 27.2 14.1 100 46-149 152-253 (466)
413 PF11848 DUF3368: Domain of un 58.1 36 0.00079 20.0 5.1 32 416-447 13-44 (48)
414 PF11846 DUF3366: Domain of un 58.0 57 0.0012 26.4 7.2 30 403-432 142-171 (193)
415 TIGR02508 type_III_yscG type I 57.1 66 0.0014 22.6 8.9 53 202-260 46-98 (115)
416 KOG2396 HAT (Half-A-TPR) repea 56.9 1.8E+02 0.0039 27.6 39.2 228 247-489 299-544 (568)
417 KOG1464 COP9 signalosome, subu 56.6 1.3E+02 0.0028 25.8 18.0 205 190-395 21-256 (440)
418 KOG1308 Hsp70-interacting prot 56.2 10 0.00022 33.3 2.5 80 2-82 141-220 (377)
419 PF13762 MNE1: Mitochondrial s 55.4 92 0.002 23.8 8.9 80 303-382 42-127 (145)
420 PF12862 Apc5: Anaphase-promot 55.0 68 0.0015 22.2 8.3 18 414-431 50-67 (94)
421 KOG3677 RNA polymerase I-assoc 54.7 67 0.0015 29.3 7.2 58 130-187 240-299 (525)
422 KOG2471 TPR repeat-containing 54.1 2E+02 0.0043 27.2 16.7 42 20-61 28-69 (696)
423 PRK10564 maltose regulon perip 54.0 34 0.00073 29.7 5.2 37 197-233 259-295 (303)
424 PF03745 DUF309: Domain of unk 53.5 54 0.0012 20.6 5.7 49 18-66 8-61 (62)
425 PF11817 Foie-gras_1: Foie gra 53.4 1E+02 0.0022 26.2 8.2 56 410-465 183-243 (247)
426 PF07678 A2M_comp: A-macroglob 53.1 1.2E+02 0.0027 25.7 8.6 48 104-153 113-160 (246)
427 KOG2063 Vacuolar assembly/sort 52.9 2.9E+02 0.0062 28.8 29.6 116 197-312 506-638 (877)
428 KOG2297 Predicted translation 52.8 1.6E+02 0.0035 25.8 18.5 18 302-319 323-340 (412)
429 COG5159 RPN6 26S proteasome re 52.7 1.5E+02 0.0034 25.6 13.5 55 14-68 8-69 (421)
430 PF08311 Mad3_BUB1_I: Mad3/BUB 52.2 95 0.0021 23.0 10.0 45 422-466 80-125 (126)
431 KOG4521 Nuclear pore complex, 52.0 3.3E+02 0.0071 29.2 14.0 87 125-217 1021-1124(1480)
432 PF09868 DUF2095: Uncharacteri 51.9 85 0.0018 22.6 5.9 39 446-485 67-105 (128)
433 KOG1839 Uncharacterized protei 51.9 1.1E+02 0.0025 32.6 9.2 133 52-188 940-1085(1236)
434 PF15297 CKAP2_C: Cytoskeleton 51.2 1.2E+02 0.0027 27.0 8.2 64 386-451 119-186 (353)
435 PF04190 DUF410: Protein of un 50.8 1.6E+02 0.0035 25.3 16.6 25 159-183 89-113 (260)
436 PF13762 MNE1: Mitochondrial s 50.1 1.1E+02 0.0025 23.3 10.3 80 338-417 42-127 (145)
437 PF10255 Paf67: RNA polymerase 50.1 38 0.00081 31.1 5.2 60 12-71 125-191 (404)
438 PF09670 Cas_Cas02710: CRISPR- 49.9 2.1E+02 0.0046 26.4 11.0 57 272-329 138-198 (379)
439 COG5108 RPO41 Mitochondrial DN 49.7 1.3E+02 0.0027 29.7 8.5 74 84-171 33-114 (1117)
440 KOG4567 GTPase-activating prot 49.6 1.3E+02 0.0029 26.4 7.8 71 355-430 263-343 (370)
441 PF14561 TPR_20: Tetratricopep 49.5 84 0.0018 21.6 9.0 63 31-94 10-73 (90)
442 COG2976 Uncharacterized protei 48.3 1.5E+02 0.0032 24.1 16.9 90 168-259 97-188 (207)
443 PF00244 14-3-3: 14-3-3 protei 48.2 1.7E+02 0.0037 24.8 10.2 20 450-469 179-198 (236)
444 cd08819 CARD_MDA5_2 Caspase ac 47.0 91 0.002 21.3 7.3 38 417-459 48-85 (88)
445 PF09454 Vps23_core: Vps23 cor 47.0 64 0.0014 20.5 4.4 48 193-241 6-53 (65)
446 PF15297 CKAP2_C: Cytoskeleton 46.1 2.2E+02 0.0049 25.5 9.7 64 350-415 118-185 (353)
447 PHA02875 ankyrin repeat protei 46.0 2.5E+02 0.0055 26.1 18.1 75 171-253 10-88 (413)
448 PF11817 Foie-gras_1: Foie gra 46.0 1.3E+02 0.0028 25.6 7.7 58 374-431 182-244 (247)
449 KOG2034 Vacuolar sorting prote 45.9 3.6E+02 0.0078 27.8 24.9 310 17-362 366-688 (911)
450 KOG0687 26S proteasome regulat 45.9 2.2E+02 0.0047 25.3 14.2 23 338-360 107-129 (393)
451 PF04090 RNA_pol_I_TF: RNA pol 45.8 1.2E+02 0.0026 24.7 6.9 60 11-70 43-102 (199)
452 KOG2422 Uncharacterized conser 45.7 3E+02 0.0064 26.8 17.3 162 57-222 251-446 (665)
453 KOG4521 Nuclear pore complex, 45.0 4.3E+02 0.0092 28.4 14.8 127 127-256 985-1129(1480)
454 PF10366 Vps39_1: Vacuolar sor 44.6 1.2E+02 0.0025 21.8 7.5 26 373-398 42-67 (108)
455 PF04910 Tcf25: Transcriptiona 44.2 2.5E+02 0.0055 25.6 20.0 58 131-188 109-167 (360)
456 PF06957 COPI_C: Coatomer (COP 43.9 2.8E+02 0.006 26.0 12.5 23 14-36 123-145 (422)
457 cd07153 Fur_like Ferric uptake 43.5 75 0.0016 23.0 5.2 47 15-61 6-52 (116)
458 PF02847 MA3: MA3 domain; Int 43.2 81 0.0018 22.6 5.3 62 374-437 6-69 (113)
459 PRK09857 putative transposase; 42.2 2.4E+02 0.0053 24.8 9.4 64 410-474 211-274 (292)
460 PF01475 FUR: Ferric uptake re 41.0 72 0.0016 23.3 4.8 48 13-60 11-58 (120)
461 PF14669 Asp_Glu_race_2: Putat 40.5 2E+02 0.0043 23.3 12.9 56 375-430 137-206 (233)
462 PF07720 TPR_3: Tetratricopept 40.4 63 0.0014 17.6 3.5 20 14-33 6-25 (36)
463 KOG1839 Uncharacterized protei 40.4 3.2E+02 0.0069 29.6 10.3 141 5-149 969-1123(1236)
464 KOG4567 GTPase-activating prot 40.2 1.4E+02 0.0031 26.2 6.7 58 390-452 263-320 (370)
465 cd07153 Fur_like Ferric uptake 40.1 92 0.002 22.5 5.2 47 376-422 6-52 (116)
466 PF08311 Mad3_BUB1_I: Mad3/BUB 39.7 1.6E+02 0.0034 21.9 10.3 43 143-185 81-124 (126)
467 PRK11639 zinc uptake transcrip 39.4 1.9E+02 0.0042 22.9 7.5 37 313-349 38-74 (169)
468 PRK09462 fur ferric uptake reg 38.6 1.8E+02 0.0039 22.3 7.6 62 360-422 7-69 (148)
469 PRK11639 zinc uptake transcrip 38.5 2E+02 0.0043 22.8 7.6 64 359-423 15-78 (169)
470 KOG2908 26S proteasome regulat 37.5 3.1E+02 0.0066 24.6 9.9 64 377-440 82-155 (380)
471 cd02680 MIT_calpain7_2 MIT: do 37.2 52 0.0011 21.7 3.0 17 56-72 18-34 (75)
472 COG2912 Uncharacterized conser 37.0 1.8E+02 0.004 25.0 6.9 59 14-73 186-244 (269)
473 PF05944 Phage_term_smal: Phag 36.9 1.8E+02 0.0039 21.9 7.5 26 49-74 53-78 (132)
474 COG0790 FOG: TPR repeat, SEL1 36.9 2.9E+02 0.0062 24.2 24.9 85 388-479 173-276 (292)
475 cd08790 DED_DEDD Death Effecto 35.8 93 0.002 21.6 4.1 58 20-79 35-92 (97)
476 TIGR03581 EF_0839 conserved hy 35.8 1.5E+02 0.0033 24.4 5.9 62 406-467 164-235 (236)
477 PF01475 FUR: Ferric uptake re 35.6 88 0.0019 22.8 4.5 41 412-452 14-54 (120)
478 PF08542 Rep_fac_C: Replicatio 34.3 89 0.0019 21.2 4.1 49 403-453 3-51 (89)
479 PF04910 Tcf25: Transcriptiona 34.2 3.7E+02 0.008 24.6 20.8 57 272-328 110-167 (360)
480 PF12926 MOZART2: Mitotic-spin 33.9 1.5E+02 0.0033 20.2 8.1 43 426-468 29-71 (88)
481 PRK13342 recombination factor 33.6 4.1E+02 0.0088 24.9 19.0 40 200-239 232-274 (413)
482 KOG3364 Membrane protein invol 33.0 2.2E+02 0.0047 21.6 9.5 71 76-154 29-100 (149)
483 PF09477 Type_III_YscG: Bacter 32.7 1.9E+02 0.0041 20.8 9.8 78 175-259 21-98 (116)
484 PRK09462 fur ferric uptake reg 32.5 2.3E+02 0.005 21.7 7.3 60 116-176 8-68 (148)
485 PF09868 DUF2095: Uncharacteri 32.3 2E+02 0.0042 20.8 5.3 39 50-89 67-105 (128)
486 KOG0403 Neoplastic transformat 31.7 4.4E+02 0.0096 24.8 19.9 373 48-455 218-631 (645)
487 COG2405 Predicted nucleic acid 31.4 1.3E+02 0.0028 22.7 4.5 36 450-485 119-154 (157)
488 COG4003 Uncharacterized protei 30.8 1.7E+02 0.0036 19.6 5.7 24 447-470 38-61 (98)
489 PRK13800 putative oxidoreducta 30.7 6.8E+02 0.015 26.6 29.1 263 192-486 632-895 (897)
490 PF10155 DUF2363: Uncharacteri 30.5 2.3E+02 0.005 21.1 10.7 51 24-80 4-54 (126)
491 COG5191 Uncharacterized conser 30.4 1.8E+02 0.004 25.6 5.9 65 334-399 106-171 (435)
492 PF12968 DUF3856: Domain of Un 30.2 2.3E+02 0.0049 20.9 8.3 90 56-151 21-126 (144)
493 PRK13342 recombination factor 29.7 4.8E+02 0.01 24.5 19.9 82 304-385 231-320 (413)
494 KOG0551 Hsp90 co-chaperone CNS 29.3 4.2E+02 0.0092 23.8 8.3 95 336-432 82-180 (390)
495 PF02607 B12-binding_2: B12 bi 29.1 1.3E+02 0.0028 19.7 4.2 40 416-455 12-51 (79)
496 PRK08691 DNA polymerase III su 28.4 6.5E+02 0.014 25.7 12.0 86 350-438 179-278 (709)
497 PRK14962 DNA polymerase III su 27.8 5.5E+02 0.012 24.7 13.3 32 329-362 192-223 (472)
498 COG4259 Uncharacterized protei 27.7 2.2E+02 0.0048 20.0 6.4 19 412-430 79-97 (121)
499 TIGR02508 type_III_yscG type I 27.6 2.3E+02 0.005 20.1 8.0 29 53-85 48-76 (115)
500 smart00544 MA3 Domain in DAP-5 27.4 2.4E+02 0.0051 20.2 8.6 62 373-436 5-68 (113)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.8e-70 Score=531.05 Aligned_cols=470 Identities=18% Similarity=0.294 Sum_probs=432.0
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNC-RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
..++...|..+...+++.|++++|+++|++|.+.|. +++...++.++.+|.+.|..++|..+|+.|.. |+..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 345677788899999999999999999999999884 46777778888999999999999999998864 8999999
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhH
Q 043480 84 RFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKAC 163 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 163 (493)
.++.+|++.|++ +.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|
T Consensus 442 ~LL~a~~k~g~~-----------e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTy 510 (1060)
T PLN03218 442 MLMSVCASSQDI-----------DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF 510 (1060)
T ss_pred HHHHHHHhCcCH-----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 999999999999 778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHH
Q 043480 164 AALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKW--NGCEPDLVTYNAILNYYC 241 (493)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~ 241 (493)
+.++.+|++.|++++|.++|..|...++.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|+
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~ 590 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999976 578999999999999999
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 043480 242 DEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYK 321 (493)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 321 (493)
+.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|..+|.+|...+..||..+|+.++.+|++.|++++|.+
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCC
Q 043480 322 LFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGI 401 (493)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 401 (493)
+++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.++.||..+|+.+|.+|++.|++++|.++|++|.+.|+
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c-------------------CCHHH
Q 043480 402 TPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQ----E-------------------KKLEL 458 (493)
Q Consensus 402 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~ 458 (493)
.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ + +..++
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~ 830 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSW 830 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHH
Confidence 999999999999999999999999999999999999999999999876542 1 12467
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhch
Q 043480 459 ACRLWDQMMEKGFTLDKTVSAALIEAIHLQD 489 (493)
Q Consensus 459 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 489 (493)
|..+|++|.+.|+.||..+|..++.++.+.+
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~ 861 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPH 861 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccc
Confidence 9999999999999999999999997775554
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.7e-69 Score=524.11 Aligned_cols=467 Identities=19% Similarity=0.274 Sum_probs=432.7
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
+++..+++.++..|.+.|.+++|.++|+.|.. |+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 403 ~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsL 478 (1060)
T PLN03218 403 DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478 (1060)
T ss_pred CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 46777888899999999999999999998864 88999999999999999999999999999999999999999999
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 043480 86 ISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAA 165 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (493)
+.+|++.|++ +.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.
T Consensus 479 I~~y~k~G~v-----------d~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYns 547 (1060)
T PLN03218 479 ISTCAKSGKV-----------DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNA 547 (1060)
T ss_pred HHHHHhCcCH-----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999999 77889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCchhHHHHHHHHHHh--CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 043480 166 LVVGLCGDGKVDLAYELTVGAMK--GKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDE 243 (493)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 243 (493)
++.+|++.|++++|.++|.+|.. .++.||..+|+.++.+|++.|++++|.++|+.|.+.|++|+..+|+.+|.+|++.
T Consensus 548 LI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~ 627 (1060)
T PLN03218 548 LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 99999999999999999999976 5688999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 043480 244 VMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLF 323 (493)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 323 (493)
|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.+..|+..+|+.+|.+|++.|++++|.++|
T Consensus 628 G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf 707 (1060)
T PLN03218 628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC
Q 043480 324 EGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITP 403 (493)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 403 (493)
++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.+++.+|.+.|+.|
T Consensus 708 ~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~p 787 (1060)
T PLN03218 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHHh----c-------------------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043480 404 DVISYNALINGLCK----S-------------------SRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELAC 460 (493)
Q Consensus 404 ~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 460 (493)
|..+|+.++..|.+ + +..+.|..+|++|.+.|+.||..+|..++.++++.+..+.+.
T Consensus 788 d~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~ 867 (1060)
T PLN03218 788 NLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRN 867 (1060)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHH
Confidence 99999999866432 1 124679999999999999999999999998888889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 043480 461 RLWDQMMEKGFTLDKTVSAALIEAIHL 487 (493)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~ll~~~~~ 487 (493)
.+++.|...+..|+..+|++++.++..
T Consensus 868 ~m~~~m~~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 868 RLIENLGISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred HHHHHhccCCCCcchhhhHHHHHhhcc
Confidence 999999888888999999999999864
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.6e-68 Score=528.04 Aligned_cols=474 Identities=19% Similarity=0.243 Sum_probs=401.6
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
++|..+|+.++.+|++.|++++|+++|++|...|+.||..+|+.++.+|...+++..+.+++..+.+.|+.|+..+++.|
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 46777777777777777777777777777777777777777777777777777777777777777777777788888888
Q ss_pred HHHHhccCChhhHHHHHHHHH--------------------HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHH
Q 043480 86 ISGLCEVKNFTLINILLDNMD--------------------KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAV 145 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~--------------------~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 145 (493)
+.+|++.|+++.|..+++.+. ++|+++|++|...|+.||..+|+.++.+|.+.|+++.|.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 888889999999988888775 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043480 146 QAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNG 225 (493)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 225 (493)
+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+++. .||..+|+.++.+|.+.|++++|+++|++|.+.|
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999986 5788899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 043480 226 CEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNT 305 (493)
Q Consensus 226 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 305 (493)
+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|+++.+ +|..+|+.
T Consensus 385 ~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~ 460 (857)
T PLN03077 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTS 460 (857)
T ss_pred CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988754 58889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------------------
Q 043480 306 VIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNL------------------- 366 (493)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------- 366 (493)
++.+|++.|+.++|.++|++|.. +++||..||+.++.+|++.|+.+.+.+++..+.+.|+
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~ 539 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC
Confidence 99999999999999999999975 4888888888877777666666666666665555544
Q ss_pred -----------CCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH-Hc
Q 043480 367 -----------SPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQ-IR 434 (493)
Q Consensus 367 -----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~ 434 (493)
.+|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.
T Consensus 540 ~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 540 MNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 456677777777777888888888888888888888888888888888888888888888888887 56
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhchhc
Q 043480 435 GAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDAA 491 (493)
Q Consensus 435 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 491 (493)
|+.|+..+|+.++++|.+.|++++|.+++++| +++||..+|.+|+.+|+..++.
T Consensus 620 gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCh
Confidence 77888888888888888888888888888877 5778888888888888766654
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.8e-66 Score=512.56 Aligned_cols=470 Identities=20% Similarity=0.241 Sum_probs=432.4
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
.++..+++.++.+|++.|+++.|+++|++|. +||..+|+.++.+|.+.|++++|+++|++|...|+.||..+|+.+
T Consensus 118 ~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~l 193 (857)
T PLN03077 118 SLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCV 193 (857)
T ss_pred CCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 4677889999999999999999999999995 467999999999999999999999999999999999999999999
Q ss_pred HHHHhccCChhhHHHHHHHHH------------------------HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCH
Q 043480 86 ISGLCEVKNFTLINILLDNMD------------------------KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEF 141 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~------------------------~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 141 (493)
+++|...+++..+.+++..+. +.|.++|++| ..||..+||.+|.+|++.|++
T Consensus 194 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m----~~~d~~s~n~li~~~~~~g~~ 269 (857)
T PLN03077 194 LRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGEC 269 (857)
T ss_pred HHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC----CCCCcchhHHHHHHHHhCCCH
Confidence 999999999998888877665 7889999998 567899999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 142 DKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFM 221 (493)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 221 (493)
++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|..||..+|+.++.+|++.|++++|.++|++|
T Consensus 270 ~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 349 (857)
T PLN03077 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh
Q 043480 222 KWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKV 301 (493)
Q Consensus 222 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 301 (493)
. .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.+++..+.+.+..++..
T Consensus 350 ~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 350 E----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred C----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 7 689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLC 381 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (493)
+|+.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.+ +++||..+|+.++.+|+
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 999999999999999999999999964 5888999999999999999999999999986 57999999988887777
Q ss_pred ccCCHhHHHHHHHHHHhCCC------------------------------CCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043480 382 KSREIGTAYGVFLDMVEQGI------------------------------TPDVISYNALINGLCKSSRVSEAMHLYEEM 431 (493)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~------------------------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 431 (493)
+.|+++.+.+++..+.+.|+ .||..+|+.++.+|++.|+.++|.++|++|
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 76666666666666655544 467778888999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhhchhcc
Q 043480 432 QIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMM-EKGFTLDKTVSAALIEAIHLQDAAN 492 (493)
Q Consensus 432 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~ 492 (493)
.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|..++.+|.+.|..+
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~ 642 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT 642 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999998 5699999999999999999988764
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-64 Score=490.18 Aligned_cols=457 Identities=18% Similarity=0.285 Sum_probs=345.0
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSN-CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
+...|+.++..|.+.|++++|+++|+.|...+ ..|+..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 44578999999999999999999999998754 57889999999999999999999999999999999999999999999
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAAL 166 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (493)
.+|++.|++ +.|.++|++| ..||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|..+
T Consensus 166 ~~y~k~g~~-----------~~A~~lf~~m----~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 230 (697)
T PLN03081 166 LMHVKCGML-----------IDARRLFDEM----PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230 (697)
T ss_pred HHHhcCCCH-----------HHHHHHHhcC----CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH
Confidence 999999999 5566667666 3467777777777777777777777777777777777777777777
Q ss_pred HHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 043480 167 VVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVML 246 (493)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 246 (493)
+.+++..|..+.+.+++..+.+.+..++..+|+.++.+|++.|++++|.++|++|. ++|..+|+.++.+|++.|++
T Consensus 231 l~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~ 306 (697)
T PLN03081 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYS 306 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCH
Confidence 77777777777777777777777777777777777777777777777777777775 45677777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 043480 247 DEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGM 326 (493)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 326 (493)
++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..+.+.+..+|..+|+.++.+|++.|++++|.++|++|
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 77777777777777777777777777777777777777777777777776677777777777777777777777777776
Q ss_pred HHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHh-CCCCCCH
Q 043480 327 RRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVE-QGITPDV 405 (493)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~ 405 (493)
.+ ||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+.
T Consensus 387 ~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 387 PR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred CC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 53 466777777777777777777777777777777777777777777777777777777777777764 4677777
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 043480 406 ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLD-KTVSAALIEA 484 (493)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~ 484 (493)
.+|+.++.+|++.|++++|.+++++| ++.|+..+|+.|+.+|...|+++.|.++++++.+ +.|+ ..+|..++..
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNL 537 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHH
Confidence 77777777777777777777776654 3567777777777777777777777777777653 3443 4567777777
Q ss_pred Hhhchhcc
Q 043480 485 IHLQDAAN 492 (493)
Q Consensus 485 ~~~~~~~~ 492 (493)
|.+.|+++
T Consensus 538 y~~~G~~~ 545 (697)
T PLN03081 538 YNSSGRQA 545 (697)
T ss_pred HHhCCCHH
Confidence 77766654
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-63 Score=485.08 Aligned_cols=440 Identities=16% Similarity=0.250 Sum_probs=422.6
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
..+|..+|+.++.+|.+.++++.|.+++..|.+.|..||..+|+.++.+|.+.|++++|.++|++|. .||..+|+.
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~ 194 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGT 194 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHH
Confidence 4579999999999999999999999999999999999999999999999999999999999999996 489999999
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACA 164 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 164 (493)
++.+|++.|++ ++|+++|++|.+.|..|+..+|+.++.++.+.|..+.+.+++..+.+.|+.||..+++
T Consensus 195 li~~~~~~g~~-----------~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n 263 (697)
T PLN03081 195 IIGGLVDAGNY-----------REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263 (697)
T ss_pred HHHHHHHCcCH-----------HHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHH
Confidence 99999999999 7888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 043480 165 ALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEV 244 (493)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 244 (493)
.++.+|++.|++++|.++|+.+. ++|..+||.++.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999986 56899999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 043480 245 MLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFE 324 (493)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 324 (493)
++++|.+++..|.+.|++||..+++.++.+|++.|++++|.++|+++.+ +|..+||.+|.+|++.|+.++|.++|+
T Consensus 340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998864 699999999999999999999999999
Q ss_pred HHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC
Q 043480 325 GMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRG-MNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITP 403 (493)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 403 (493)
+|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+ .++.|+..+|+.++.+|++.|++++|.+++++| ++.|
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p 492 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKP 492 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCC
Confidence 999999999999999999999999999999999999986 699999999999999999999999999999876 5789
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 043480 404 DVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFT 472 (493)
Q Consensus 404 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 472 (493)
+..+|+.|+.+|...|+++.|..+++++.+. .| +..+|..|++.|.+.|++++|.++++.|.+.|++
T Consensus 493 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 493 TVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999999999999764 55 5789999999999999999999999999999875
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.9e-32 Score=276.06 Aligned_cols=476 Identities=11% Similarity=0.019 Sum_probs=331.7
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCC--------
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG-------- 74 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------- 74 (493)
+..|.++.++..++..+.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|...++.+.+..
T Consensus 357 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 435 (899)
T TIGR02917 357 GLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADL 435 (899)
T ss_pred hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHH
Confidence 3445566666777777777777777777777766654 4445555555555555666665555555554432
Q ss_pred -------------------------CCcChhhHHHHHHHHhccCChhhHHHHHHHHH-----------------------
Q 043480 75 -------------------------FSLTPFTYSRFISGLCEVKNFTLINILLDNMD----------------------- 106 (493)
Q Consensus 75 -------------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----------------------- 106 (493)
.++++.++..+..++...|+++.|...+++..
T Consensus 436 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 436 LLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCH
Confidence 12344555556666666666665555555443
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHH
Q 043480 107 KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGA 186 (493)
Q Consensus 107 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 186 (493)
+.|.+.++++... .+.+..++..+...+.+.|++++|...++++...+ +.+...+..++..+...|++++|..+++.+
T Consensus 516 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 516 DDAIQRFEKVLTI-DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455666666554 23355566666666666666666666666665543 234455666666677777777777777766
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChh
Q 043480 187 MKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVY 266 (493)
Q Consensus 187 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 266 (493)
.+.. +.+...|..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..
T Consensus 594 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 670 (899)
T TIGR02917 594 ADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTE 670 (899)
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHH
Confidence 6543 4456667777777777777777777777776553 4455666667777777777777777777776543 34466
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHH
Q 043480 267 SYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFL 346 (493)
Q Consensus 267 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (493)
.+..+...+...|++++|..++..+....+ .+...+..+...+...|++++|.+.|+.+...+ |+..++..+..++.
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 747 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHH
Confidence 667777777777777777777777766543 355667777777888888888888888887763 34466677778888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 043480 347 REGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMH 426 (493)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (493)
..|++++|...++.+.+.. +.+...+..+...|...|++++|...|+++.+.. +++..+++.+...+...|+ .+|+.
T Consensus 748 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 8888888888888887755 5677888888888888899999999999888764 5577788888888888888 77999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhchhcc
Q 043480 427 LYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDAAN 492 (493)
Q Consensus 427 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 492 (493)
+++++.+.... ++.++..+..++...|++++|.+.++++++.+. .+..++..+..++...|..+
T Consensus 825 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~ 888 (899)
T TIGR02917 825 YAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKA 888 (899)
T ss_pred HHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHH
Confidence 99888775322 677788889999999999999999999998753 48899999999999888754
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.8e-31 Score=272.97 Aligned_cols=473 Identities=14% Similarity=0.058 Sum_probs=361.3
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
..|.++..+..++..+.+.|++++|+..++.+.+.+ +.+...+..+..++.+.|++++|.++|+++.+.. +.+...+.
T Consensus 324 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 401 (899)
T TIGR02917 324 YAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAART 401 (899)
T ss_pred hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 356677778888888899999999999998888775 6677788888889999999999999999887764 44566777
Q ss_pred HHHHHHhccCChhhHHHHHHHHH-----------------------HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 043480 84 RFISGLCEVKNFTLINILLDNMD-----------------------KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKE 140 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~-----------------------~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 140 (493)
.+..++...|+++.|...++... +.|..+++.+... .+.+..++..+...+...|+
T Consensus 402 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 480 (899)
T TIGR02917 402 QLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGD 480 (899)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCC
Confidence 78888888888888887777654 5677777777664 45577788888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043480 141 FDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSF 220 (493)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 220 (493)
+++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.... +.+..++..+...+.+.|+.++|..++++
T Consensus 481 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 481 LAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEK 558 (899)
T ss_pred HHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998888753 3355677778888888888888988888887765 45677788888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh
Q 043480 221 MKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDK 300 (493)
Q Consensus 221 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 300 (493)
+...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...|..+..++...|++++|...+.++....+. +.
T Consensus 559 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 635 (899)
T TIGR02917 559 AAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SA 635 (899)
T ss_pred HHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence 87664 5566677778888888888888888888887643 456777888888888888888888888888766543 56
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 043480 301 VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCL 380 (493)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (493)
..+..+..++...|++++|..+++++.+.. +.+..++..+...+...|++++|..+++.+.+.. +.+...+..+...+
T Consensus 636 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 713 (899)
T TIGR02917 636 LALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLY 713 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHH
Confidence 667778888888888888888888887653 3356677777777888888888888888877665 55667777777777
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043480 381 CKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELAC 460 (493)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 460 (493)
...|++++|...++.+.+. .|+..++..+..++...|++++|.+.++++.+.. +.+...+..+...|...|++++|.
T Consensus 714 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~ 790 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAI 790 (899)
T ss_pred HHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHH
Confidence 7888888888888887765 3444666677777777788888888777777653 226777777777777788888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhchh
Q 043480 461 RLWDQMMEKGFTLDKTVSAALIEAIHLQDA 490 (493)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 490 (493)
+.++++.+.. +.+..++..+...+...|+
T Consensus 791 ~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 791 KHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 8888777653 4456666666666655544
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.1e-23 Score=215.66 Aligned_cols=463 Identities=11% Similarity=0.009 Sum_probs=316.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 13 RAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSID-YNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 13 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
..++..+.+.|++++|++.|+.+.+.+ +++... ...........|++++|+..++++.+.. +.++..+..+...+..
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHc
Confidence 455667888999999999999998775 444321 1122222334588999999999998875 4566677788888888
Q ss_pred cCChhhHHHHHHHHHH-------HH----------------HHHHHHHHhC--------------------CCCCCHhhH
Q 043480 92 VKNFTLINILLDNMDK-------LA----------------LEVFHKMVSK--------------------GREPDVVTY 128 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~-------~a----------------~~~~~~~~~~--------------------g~~~~~~~~ 128 (493)
.|+.++|...++++.. .+ ...+...... ...|... .
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~ 272 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-A 272 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-H
Confidence 8999888888876531 01 1111111110 0001100 0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCC-hh-----------
Q 043480 129 TIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFG-VL----------- 196 (493)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~----------- 196 (493)
......+...|++++|+..|++.++.. +.+..++..+...+.+.|++++|+..|++..+...... ..
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 122445667888999999998888753 23677888888888888999999988888887542211 11
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHH------
Q 043480 197 -IYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYN------ 269 (493)
Q Consensus 197 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------ 269 (493)
........+.+.|++++|...|+++.... +.+...+..+...+...|++++|++.|+++.+.. +.+...+.
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 11223556778888888888888888764 4556667777888888888888888888877643 12222221
Q ss_pred ------------------------------------HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 043480 270 ------------------------------------QLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKG 313 (493)
Q Consensus 270 ------------------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (493)
.+...+...|++++|+..+++.+...+. +...+..+...|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 1233455678999999999998887654 666777788888999
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHhHHHHHH--------------------------------------------HHHHHcC
Q 043480 314 GQTRRAYKLFEGMRRRGIELDVVTFTILI--------------------------------------------KAFLREG 349 (493)
Q Consensus 314 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--------------------------------------------~~~~~~~ 349 (493)
|++++|...++++.+.... +...+..+. ..+...|
T Consensus 509 G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 9999999999988765322 333222222 2334445
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 043480 350 SSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYE 429 (493)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (493)
+.++|..+++ ..+.+...+..+...+.+.|++++|...|+++++.. +.+...+..++..+...|++++|++.++
T Consensus 588 ~~~eA~~~l~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 588 KEAEAEALLR-----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred CHHHHHHHHH-----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555555544 124566677788888999999999999999999863 4467888999999999999999999999
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHhhchhc
Q 043480 430 EMQIRGAHP-DEVTFKLLIGGLVQEKKLELACRLWDQMMEKGF--TL---DKTVSAALIEAIHLQDAA 491 (493)
Q Consensus 430 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~---~~~~~~~ll~~~~~~~~~ 491 (493)
...+. .| +...+..+..++...|++++|.++++++....- +| +..++..+...+...|+.
T Consensus 662 ~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~ 727 (1157)
T PRK11447 662 KLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQP 727 (1157)
T ss_pred HHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCH
Confidence 88764 33 567778888999999999999999999987521 12 123455555556555543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=2.6e-23 Score=212.94 Aligned_cols=467 Identities=13% Similarity=0.013 Sum_probs=320.6
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhH----------------HHHHHHHHhcCChhHHHHH
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDY----------------NRFIGVLIRHSRFDLVQFY 66 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~a~~~ 66 (493)
...|.|+.++..++..+.+.|+.++|.+.+++..+.+ |.+...+ ......+...|++++|++.
T Consensus 56 ~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~ 134 (1157)
T PRK11447 56 LIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALAS 134 (1157)
T ss_pred ccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHH
Confidence 3467788888888999999999999999999988876 4444332 2334467788999999999
Q ss_pred HHHhccCCCCcChhh-HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHH
Q 043480 67 YQQMHPLGFSLTPFT-YSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAV 145 (493)
Q Consensus 67 ~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 145 (493)
|+.+.+.+ +|+... ...+.......++. +.|++.++++... .+.+...+..+...+...|++++|+
T Consensus 135 ~~~~l~~~-p~~~~la~~y~~~~~~~~g~~-----------~~A~~~L~~ll~~-~P~~~~~~~~LA~ll~~~g~~~eAl 201 (1157)
T PRK11447 135 YDKLFNGA-PPELDLAVEYWRLVAKLPAQR-----------PEAINQLQRLNAD-YPGNTGLRNTLALLLFSSGRRDEGF 201 (1157)
T ss_pred HHHHccCC-CCChHHHHHHHHHHhhCCccH-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHccCCHHHHH
Confidence 99988764 334321 11111222234666 6677888888775 3446777888888999999999999
Q ss_pred HHHHHHHHCCC------------------C--------------CCHHhH---------------------HHHHHHHhc
Q 043480 146 QAWEHMIENGI------------------K--------------PDNKAC---------------------AALVVGLCG 172 (493)
Q Consensus 146 ~~~~~~~~~~~------------------~--------------~~~~~~---------------------~~l~~~~~~ 172 (493)
+.++++..... . |+...+ ......+..
T Consensus 202 ~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~ 281 (1157)
T PRK11447 202 AVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVD 281 (1157)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 99988754321 0 110000 011344567
Q ss_pred cCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHH------------HHHHH
Q 043480 173 DGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEP-DLVTYN------------AILNY 239 (493)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~------------~ll~~ 239 (493)
.|++++|+..|++.++.. +.+..++..+...+.+.|++++|+..|++..+..... ....+. .....
T Consensus 282 ~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 899999999999998865 4577888899999999999999999999988763211 111121 22345
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHH-------------
Q 043480 240 YCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTV------------- 306 (493)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------- 306 (493)
+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|+..|+++....+. +...+..+
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHH
Confidence 678999999999999998764 345667778889999999999999999999876543 23222222
Q ss_pred -----------------------------HHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHH
Q 043480 307 -----------------------------IEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKL 357 (493)
Q Consensus 307 -----------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 357 (493)
...+...|++++|++.|++..+..+. +...+..+...|...|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 23344568888888888888876432 566677788888888999999988
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhC--------------------------------------
Q 043480 358 LNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQ-------------------------------------- 399 (493)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------------------------- 399 (493)
++.+.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 88887643 334333333333334444444444444332110
Q ss_pred -CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHH
Q 043480 400 -GITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLD-KTV 477 (493)
Q Consensus 400 -~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~ 477 (493)
..+++...+..+...+...|++++|+..|++..+..+. +...+..++..+...|++++|.+.++.+.+. .|+ ...
T Consensus 597 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~ 673 (1157)
T PRK11447 597 RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNT 673 (1157)
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHH
Confidence 02334456667777888888999999999888875322 6788888888898999999999999887753 333 445
Q ss_pred HHHHHHHHhhchhc
Q 043480 478 SAALIEAIHLQDAA 491 (493)
Q Consensus 478 ~~~ll~~~~~~~~~ 491 (493)
+..+..++...|+.
T Consensus 674 ~~~la~~~~~~g~~ 687 (1157)
T PRK11447 674 QRRVALAWAALGDT 687 (1157)
T ss_pred HHHHHHHHHhCCCH
Confidence 55555566555543
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=4e-24 Score=186.94 Aligned_cols=446 Identities=15% Similarity=0.098 Sum_probs=366.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
...|+.-..+.|++.+|.+.-..+-+.+ +.+......+-..+.+..+++.....-...++.. +--..+|+.+.+.+..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4567777888999999999988877766 4445555555567777777777666555554443 4456789999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHHH
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNK-ACAALVVGL 170 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~ 170 (493)
.|++ +.|+..++.+++. .+..+..|..+..++...|+.+.|.+.|...++. .|+.. ..+.+....
T Consensus 129 rg~~-----------~~al~~y~~aiel-~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 129 RGQL-----------QDALALYRAAIEL-KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL 194 (966)
T ss_pred hchH-----------HHHHHHHHHHHhc-CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence 9999 7888899999885 3446789999999999999999999999998875 46544 344555666
Q ss_pred hccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 043480 171 CGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAE 250 (493)
Q Consensus 171 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 250 (493)
-..|++++|...+.+.++.. +--..+|+.|...+-.+|+...|+..|++..+.. +.=...|-.|...|...+.+++|.
T Consensus 195 ka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHH
Confidence 67899999999999998864 3345689999999999999999999999998763 333567888999999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043480 251 KLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRG 330 (493)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 330 (493)
..+.+..... +.....+..+...|...|..+.|+..+++.+...+. =+..|+.|..++-..|++.+|++.|.+.....
T Consensus 273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 9999887643 345667788888899999999999999999987654 56689999999999999999999999998874
Q ss_pred CCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCH-hhHH
Q 043480 331 IELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDV-ISYN 409 (493)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~ 409 (493)
+ ......+.|...+...|.++.|.++|....+.. +.-....+.|...|-+.|++++|...|++.+. +.|+. ..|+
T Consensus 351 p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~ 426 (966)
T KOG4626|consen 351 P-NHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALS 426 (966)
T ss_pred C-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHH
Confidence 3 367788999999999999999999999988754 34456789999999999999999999999997 56764 6899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 043480 410 ALINGLCKSSRVSEAMHLYEEMQIRGAHPD-EVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDK-TVSAALIEAI 485 (493)
Q Consensus 410 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~ 485 (493)
.+...|-..|+.+.|.+.+.+.+. +.|. ...++.|...|...|+..+|..-++.+++ ++||. ..+-.++.++
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHH
Confidence 999999999999999999999988 4564 78899999999999999999999999996 57775 4444444443
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=5.6e-21 Score=184.10 Aligned_cols=431 Identities=12% Similarity=-0.026 Sum_probs=284.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHh
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (493)
.+......|.+.|++++|++.|+++++.. |+...|..+..+|...|++++|+..++..++.. +.+..++..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 35577888999999999999999998854 567788889999999999999999999998875 456678888999999
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 043480 91 EVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGL 170 (493)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 170 (493)
..|++++ |+..|......+.. +......++..+.. ..+........+.. +++...+..+.. +
T Consensus 206 ~lg~~~e-----------A~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~ 267 (615)
T TIGR00990 206 GLGKYAD-----------ALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-Y 267 (615)
T ss_pred HcCCHHH-----------HHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-H
Confidence 9999954 44444444332111 11111111111111 12222232332221 112222222222 1
Q ss_pred hccCchhHHHHHHHHHHhCCCCCC-hhhHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHccC
Q 043480 171 CGDGKVDLAYELTVGAMKGKVEFG-VLIYNALISGF---CRTGRIRRAMAIKSFMKWNG-C-EPDLVTYNAILNYYCDEV 244 (493)
Q Consensus 171 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~ll~~~~~~~ 244 (493)
....+......-+....+. .+. ...+..+...+ ...+++++|.+.|+.....+ . +.....+..+...+...|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 268 LQSFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred HHHccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 1111111111111111111 111 11111111111 23467888888888888754 2 234456777777888889
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 043480 245 MLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFE 324 (493)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 324 (493)
++++|...++...+.. +.....|..+...+...|++++|...|.+++...+. +...|..+...+...|++++|...|+
T Consensus 346 ~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 346 KHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred CHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999998887753 233557777888888889999999999888876543 66778888888888999999999999
Q ss_pred HHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC
Q 043480 325 GMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD 404 (493)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 404 (493)
+..+..+ .+...+..+..++.+.|++++|...|+...+.. +.+...++.+...+...|++++|...|++.++.....+
T Consensus 424 kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 424 KSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK 501 (615)
T ss_pred HHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc
Confidence 8887643 356667778888888999999999998888654 55677888888888889999999999998886521111
Q ss_pred Hh------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 405 VI------SYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 405 ~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.. .++.....+...|++++|.+++++....+.. +...+..+...+.+.|++++|.+.++++.+.
T Consensus 502 ~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 502 PMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 11 1122222333468899999999988775322 4567888889999999999999999888765
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.3e-22 Score=177.57 Aligned_cols=419 Identities=14% Similarity=0.079 Sum_probs=315.8
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
|.+....-.+-..+....+++....--....+.. +.-..+|..+..++-..|++++|+.+|+.+++.. +.....|..+
T Consensus 79 ~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inl 156 (966)
T KOG4626|consen 79 PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINL 156 (966)
T ss_pred CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhH
Confidence 3344444444455666667776666555555554 5567778888888888888888888888888764 4456778888
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHhH
Q 043480 86 ISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVT-YTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD-NKAC 163 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 163 (493)
..++...|+. ..|.+.|.+.++ ..|+... ...+...+-..|++.+|...|-+.++. .|. ...|
T Consensus 157 a~al~~~~~~-----------~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiaw 221 (966)
T KOG4626|consen 157 AAALVTQGDL-----------ELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAW 221 (966)
T ss_pred HHHHHhcCCC-----------cccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeee
Confidence 8888888888 455566666666 3454443 233444555678888888888887765 343 4567
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 043480 164 AALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDE 243 (493)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 243 (493)
+.|.-.+-.+|+.-.|+.-|.+..+.+ +--...|-.|...|...+.+++|+..|.+..... +.....+..+...|..+
T Consensus 222 snLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeq 299 (966)
T KOG4626|consen 222 SNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQ 299 (966)
T ss_pred hhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEecc
Confidence 788888888888888888888888764 2335678888888888889999998888877653 44566777777888889
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 043480 244 VMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLF 323 (493)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 323 (493)
|.++-|+..+++..+.. +.-+..|+.+..++-..|++.+|...+.+.+.-.+. -..+.+.|...+...|.+++|..+|
T Consensus 300 G~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly 377 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLY 377 (966)
T ss_pred ccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHH
Confidence 99999999999888753 334678899999999999999999999888876544 4556778888999999999999999
Q ss_pred HHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC
Q 043480 324 EGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITP 403 (493)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 403 (493)
....+-.. --...++.|...|-.+|+.++|+..+++..+.. +.-...|+.+...|-..|+.+.|.+.+.+.+.. .|
T Consensus 378 ~~al~v~p-~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nP 453 (966)
T KOG4626|consen 378 LKALEVFP-EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NP 453 (966)
T ss_pred HHHHhhCh-hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--Cc
Confidence 98877522 134567888899999999999999999988753 334568899999999999999999999999875 45
Q ss_pred C-HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 043480 404 D-VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD-EVTFKLLIGGLV 451 (493)
Q Consensus 404 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 451 (493)
. ...++.|...|-.+|+..+|++-++...+ ++|| +..+..++.++-
T Consensus 454 t~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 454 TFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 4 46788999999999999999999999987 4665 555665655443
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.7e-22 Score=185.22 Aligned_cols=301 Identities=12% Similarity=0.039 Sum_probs=145.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcC---hhhHHHHHHHHhc
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLT---PFTYSRFISGLCE 91 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~ 91 (493)
....+...|++++|+..|+++.+.+ |.+..++..+...+...|++++|..+++.+...+..++ ...+..+...+..
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666654 44455566666666666666666666666655321111 1344555555666
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HhHHHHH
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN----KACAALV 167 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~ 167 (493)
.|++ +.|..+|+++.+. .+.+..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+.
T Consensus 120 ~g~~-----------~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 120 AGLL-----------DRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred CCCH-----------HHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 6666 4444555555443 2334555666666666666666666666666554322111 1223334
Q ss_pred HHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH
Q 043480 168 VGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLD 247 (493)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 247 (493)
..+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++...+......++..++..|...|+++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 44445555555555555554432 22233444444555555555555555555443321111233444444455555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHH---cCCHHHHHHHHH
Q 043480 248 EAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCK---GGQTRRAYKLFE 324 (493)
Q Consensus 248 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~ 324 (493)
+|...++.+.+.. |+...+..++..+.+.|++++|...+.++... .|+...++.++..+.. .|+.+++..+++
T Consensus 267 ~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 267 EGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 5555555444432 33333344444444444555554444444443 1333344434433332 224444444444
Q ss_pred HHHHcCCCc
Q 043480 325 GMRRRGIEL 333 (493)
Q Consensus 325 ~~~~~~~~~ 333 (493)
.+.+.++.|
T Consensus 343 ~~~~~~~~~ 351 (389)
T PRK11788 343 DLVGEQLKR 351 (389)
T ss_pred HHHHHHHhC
Confidence 444443333
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=2.5e-22 Score=184.13 Aligned_cols=303 Identities=15% Similarity=0.122 Sum_probs=207.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhc
Q 043480 132 IDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFG---VLIYNALISGFCRT 208 (493)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 208 (493)
...+...|++++|++.|.++.+.+ +.+..++..+...+...|++++|..+++.+......++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 345667889999999999999864 23556788888888899999999999988877432111 24567788888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHccCCHHHH
Q 043480 209 GRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDV----YSYNQLLKGLCNSNQLDKA 284 (493)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 284 (493)
|++++|..+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 89999998888888653 556777888888888888888888888888765422211 1334555666677777777
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 043480 285 YMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM 364 (493)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 364 (493)
...+.++....+. +...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777665432 445566666777777777777777777766533222345666666777777777777777776654
Q ss_pred CCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHH
Q 043480 365 NLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCK---SSRVSEAMHLYEEMQIRGAHPDEV 441 (493)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~ 441 (493)
.|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 244445566666677777777777777766654 4666666666655553 346667777777776655555443
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=2.9e-19 Score=175.37 Aligned_cols=204 Identities=11% Similarity=0.014 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHH
Q 043480 279 NQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLL 358 (493)
Q Consensus 279 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 358 (493)
++.++|...+.+.....+ +......+...+...|++++|...|+++... +|+...+..+..++...|+.++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~~P--d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQP--DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHhCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 445555555555554432 2222222333345677777777777776544 334444555566667777777777777
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 043480 359 NQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP 438 (493)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 438 (493)
+...+.. +.+...+..+.......|++++|...+++.++. .|+...+..+..++.+.|++++|+..+++.....+.
T Consensus 566 ~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd- 641 (987)
T PRK09782 566 QQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN- 641 (987)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 7776654 333333333333444557777777777777764 456667777777777778888888888777764322
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhchhc
Q 043480 439 DEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDAA 491 (493)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 491 (493)
+...+..+..++...|++++|...++++++. .+-+...+..+-.++...|+.
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCH
Confidence 5667777777777777888887777777764 233456666666666666654
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=7.2e-20 Score=175.66 Aligned_cols=334 Identities=11% Similarity=0.016 Sum_probs=268.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
....+..+.++|++++|+.+++.+.... +.+...+..++.+....|++++|...++++.+.. +.++..+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 3456778899999999999999999876 5566677777788888999999999999998875 5566778888899999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLC 171 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (493)
.|++ +.|+..+++.... .+.+...+..+...+...|++++|...++.+...... +...+..+ ..+.
T Consensus 123 ~g~~-----------~~Ai~~l~~Al~l-~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~ 188 (656)
T PRK15174 123 SKQY-----------ATVADLAEQAWLA-FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFL 188 (656)
T ss_pred cCCH-----------HHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHH
Confidence 9999 6677778887775 3446778888999999999999999999988765322 33333333 3478
Q ss_pred ccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH---
Q 043480 172 GDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDE--- 248 (493)
Q Consensus 172 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--- 248 (493)
..|++++|...++.+......++...+..+...+...|++++|...++++.... +.+...+..+...+...|++++
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~ 267 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKL 267 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHH
Confidence 899999999999998876433444455566778889999999999999998775 5567788888999999999986
Q ss_pred -HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043480 249 -AEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMR 327 (493)
Q Consensus 249 -a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 327 (493)
|...++...+.. +.+...+..+...+...|++++|...+++.....+. +...+..+..++...|++++|...|+.+.
T Consensus 268 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 268 QAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 799999988754 446778888999999999999999999999987654 66677888899999999999999999998
Q ss_pred HcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 043480 328 RRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN 365 (493)
Q Consensus 328 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 365 (493)
..+.. +...+..+..++...|+.++|...|+...+..
T Consensus 346 ~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 346 REKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 76332 22334445677889999999999999988653
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=3.2e-19 Score=174.98 Aligned_cols=426 Identities=11% Similarity=-0.011 Sum_probs=229.4
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
+-++....-.+......|+.++|++++.+..... +.+...+..+...+...|++++|..+|++.++.. +.++..+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4455555556666777777777777777766533 4444556667777777777777777777766653 3345555666
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 043480 86 ISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAA 165 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (493)
..++...|++ +.|+..++++... .+.+.. +..+..++...|++++|+..++++.+.. +.+...+..
T Consensus 90 a~~l~~~g~~-----------~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~ 155 (765)
T PRK10049 90 ILTLADAGQY-----------DEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTE 155 (765)
T ss_pred HHHHHHCCCH-----------HHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 6666677777 5566667766664 333444 6666667777777777777777777652 123444455
Q ss_pred HHHHHhccCchhHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043480 166 LVVGLCGDGKVDLAYELTVGAMKGKVEFGV------LIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNY 239 (493)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 239 (493)
+..++...+..+.|.+.++.+.. .|+. ......+......+.
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~----------------------------- 203 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR----------------------------- 203 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc-----------------------------
Confidence 55566666666666666655443 1110 001111111110000
Q ss_pred HHccCCh---HHHHHHHHHHHHC-CCCCChh-hHH----HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 043480 240 YCDEVML---DEAEKLVMEMESC-GIEPDVY-SYN----QLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAF 310 (493)
Q Consensus 240 ~~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (493)
...+++ ++|+..++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+...+..........+...|
T Consensus 204 -~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~y 282 (765)
T PRK10049 204 -SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAY 282 (765)
T ss_pred -ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 011112 3444444444432 1111111 000 00122334455555555555555443210111111234455
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCc---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------CCC---HHhH
Q 043480 311 CKGGQTRRAYKLFEGMRRRGIEL---DVVTFTILIKAFLREGSSAMAEKLLNQMRGMNL-----------SPD---RILY 373 (493)
Q Consensus 311 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~ 373 (493)
...|++++|+..|+.+.+..... .......+..++...|++++|...++.+.+... .|+ ...+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 55566666666655554432110 112333444455555666666666655554320 122 1234
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh
Q 043480 374 TTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQ 452 (493)
Q Consensus 374 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 452 (493)
..+...+...|++++|.++++++... .+.+...+..+...+...|++++|++.+++.... .| +...+...+..+..
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHH
Confidence 45556666777777777777777665 2445666677777777777777777777777664 34 45666666667777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 453 EKKLELACRLWDQMMEKGFTLDKTVSAALIEAI 485 (493)
Q Consensus 453 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 485 (493)
.|++++|..+++++++. .|+......+-+.+
T Consensus 440 ~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred hCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 77777777777777764 55555544444443
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=3e-19 Score=175.22 Aligned_cols=378 Identities=9% Similarity=-0.054 Sum_probs=229.8
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
.|.+...+..++.++.+.|++++|.++|+++++.. |.+...+..++.++...|++++|+..++++.+.. +.+.. +..
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~ 121 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLA 121 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHH
Confidence 45666779999999999999999999999999876 6777888889999999999999999999998874 45566 888
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH---
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNK--- 161 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 161 (493)
+..++...|+. +.|+..++++... .+.+...+..+...+...|..+.|++.++.... .|+..
T Consensus 122 la~~l~~~g~~-----------~~Al~~l~~al~~-~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l 186 (765)
T PRK10049 122 LAYVYKRAGRH-----------WDELRAMTQALPR-APQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDL 186 (765)
T ss_pred HHHHHHHCCCH-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHH
Confidence 88899999999 7788999999886 344666777788888899999999999987664 23310
Q ss_pred ---hHHHHHHHHhc-----cCch---hHHHHHHHHHHhC-CCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043480 162 ---ACAALVVGLCG-----DGKV---DLAYELTVGAMKG-KVEFGVL-IYNALISGFCRTGRIRRAMAIKSFMKWNGCEP 228 (493)
Q Consensus 162 ---~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 228 (493)
....++..... .+++ +.|++.++.+.+. ...|+.. .+..
T Consensus 187 ~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~---------------------------- 238 (765)
T PRK10049 187 EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR---------------------------- 238 (765)
T ss_pred HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH----------------------------
Confidence 11111222111 1112 3344444444432 0011110 0000
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---ChhhHH
Q 043480 229 DLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIE-PDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR---DKVSYN 304 (493)
Q Consensus 229 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ 304 (493)
.....+..+...|++++|+..|+.+.+.+.+ |+ .....+...|...|++++|+..|+++....+.. ......
T Consensus 239 ---a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~ 314 (765)
T PRK10049 239 ---ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA 314 (765)
T ss_pred ---HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence 0000011223334455555555554443211 11 111112334444555555555555444322111 011233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CcC---HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 043480 305 TVIEAFCKGGQTRRAYKLFEGMRRRGI-----------ELD---VVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDR 370 (493)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 370 (493)
.+..++...|++++|..+++.+....+ .|+ ...+..+...+...|+.++|+..++.+.... |.+.
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~ 393 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQ 393 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 333344455555555555555544311 122 1234455666677777788877777777654 5566
Q ss_pred HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
..+..+...+...|++++|++.++++++.. +.+...+..++..+...|++++|..+++++++.
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777777777777778888888887777652 223455556666777777888888888777764
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=2.2e-19 Score=172.35 Aligned_cols=362 Identities=12% Similarity=-0.008 Sum_probs=230.9
Q ss_pred HHHHcCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCCh
Q 043480 18 NLVKAGLIDQAVHVFDEMTQSN--CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNF 95 (493)
Q Consensus 18 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 95 (493)
.+.++.+++..--.|....+.. -..+......++..+.+.|++++|..+++..+... +.++..+..++.+....|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCH
Confidence 3456666776666666554431 11222334445566777788888888877777664 33344555555666667777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCc
Q 043480 96 TLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGK 175 (493)
Q Consensus 96 ~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (493)
+.|+..++++... .+.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|+
T Consensus 93 -----------~~A~~~l~~~l~~-~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~ 159 (656)
T PRK15174 93 -----------DAVLQVVNKLLAV-NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDK 159 (656)
T ss_pred -----------HHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 6677777777775 34456667777777777888888888887777652 2245666677777777777
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 043480 176 VDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVME 255 (493)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 255 (493)
+++|...+..+..... .+...+..+ ..+...|++++|...++.+......++...+..+...+...|++++|...++.
T Consensus 160 ~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~ 237 (656)
T PRK15174 160 ELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGES 237 (656)
T ss_pred hHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777776655432 223333333 23666777777777777776553223344444455666777777777777777
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCHHH----HHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 043480 256 MESCGIEPDVYSYNQLLKGLCNSNQLDK----AYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGI 331 (493)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 331 (493)
+.+.. +.+...+..+...+...|++++ |...|++.....+. +...+..+...+...|++++|...+++.....+
T Consensus 238 al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P 315 (656)
T PRK15174 238 ALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP 315 (656)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 77653 3455666667777777777764 67777777766543 566677777777777777777777777776532
Q ss_pred CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 043480 332 ELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQ 399 (493)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 399 (493)
.+...+..+..++...|++++|...++.+.+.+ +.+...+..+..++...|+.++|...|++..+.
T Consensus 316 -~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 316 -DLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 244556666677777777777777777776543 222233334455667777777777777777654
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=2.9e-18 Score=168.46 Aligned_cols=442 Identities=12% Similarity=0.068 Sum_probs=298.9
Q ss_pred chhh-HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 8 QRLI-YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIR-HSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 8 ~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
++.+ ...+.+.|.+.|+++.|++++.++.+.+ +.+......+..+|.. .++ +++..+++. .+..++..+..+
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~al 253 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITY 253 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHH
Confidence 3444 4444899999999999999999999986 5666667777778887 366 777777553 224677888899
Q ss_pred HHHHhccCChhhHHHHHHHHH---------------------------------------HHHHHHHHHHHh--------
Q 043480 86 ISGLCEVKNFTLINILLDNMD---------------------------------------KLALEVFHKMVS-------- 118 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~---------------------------------------~~a~~~~~~~~~-------- 118 (493)
...+...|+.+.|...+.++. .-.++..+....
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ 333 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999998888765 001111111111
Q ss_pred --CCCCCCHhhHHHHHHHH--hccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCC--CC
Q 043480 119 --KGREPDVVTYTIVIDGL--CKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGK--VE 192 (493)
Q Consensus 119 --~g~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~ 192 (493)
.+..|..... .++.. ...+...++.+.+..|.... +-+......+.-.....|+.++|.++++...... ..
T Consensus 334 ~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (987)
T PRK09782 334 KLLATLPANEML--EERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR 410 (987)
T ss_pred HHhcCCCcchHH--HHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc
Confidence 1133333321 22222 23366667777777776652 2356666666667778888888888888877621 12
Q ss_pred CChhhHHHHHHHHHhcCC-------------------------HHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHc
Q 043480 193 FGVLIYNALISGFCRTGR-------------------------IRR---AMAIKSFMKWNGCEP--DLVTYNAILNYYCD 242 (493)
Q Consensus 193 ~~~~~~~~l~~~~~~~~~-------------------------~~~---a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~ 242 (493)
.+......++..|.+.+. ..+ +...+....... ++ +...|..+..++..
T Consensus 411 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 411 LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD 489 (987)
T ss_pred cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh
Confidence 233344455555554432 223 233333333321 44 56677777766665
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 043480 243 EVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKL 322 (493)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 322 (493)
++.++|...+....... |+......+...+...|++++|...|+++.... ++...+..+...+.+.|++++|...
T Consensus 490 -~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 490 -TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred -CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHH
Confidence 78888888777766543 554443344455568889999988888875542 2334455667778888899999999
Q ss_pred HHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCC
Q 043480 323 FEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGIT 402 (493)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 402 (493)
++...+.+. .+...+..+.......|++++|...++...+.. |+...+..+..++.+.|++++|...+++.++.. +
T Consensus 565 l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-P 640 (987)
T PRK09782 565 LQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-P 640 (987)
T ss_pred HHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 988887642 233333333344445689999999988888764 567788888888888999999999999888763 4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 403 PDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 403 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.+...++.+..++...|++++|+..+++..+..+. +...+..+..++...|++++|...++++.+.
T Consensus 641 d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 641 NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 45667778888888889999999999888875322 6788888888999999999999999888865
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=4.2e-19 Score=171.13 Aligned_cols=403 Identities=12% Similarity=-0.007 Sum_probs=279.8
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
.|++..|..+..+|.+.|++++|++.++.+++.+ |.+...|..+..++...|++++|+.-|......+ ..+......+
T Consensus 157 ~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~ 234 (615)
T TIGR00990 157 KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIID-GFRNEQSAQA 234 (615)
T ss_pred CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCccHHHHHH
Confidence 3578889999999999999999999999999986 6678889999999999999999999887765543 1221111111
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHhHH
Q 043480 86 ISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD-NKACA 164 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 164 (493)
+..+.. ..+.......... .+++...+..+...+ ..........-+....+. .+. ...+.
T Consensus 235 ~~~~l~---------------~~a~~~~~~~l~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 295 (615)
T TIGR00990 235 VERLLK---------------KFAESKAKEILET-KPENLPSVTFVGNYL-QSFRPKPRPAGLEDSNEL--DEETGNGQL 295 (615)
T ss_pred HHHHHH---------------HHHHHHHHHHHhc-CCCCCCCHHHHHHHH-HHccCCcchhhhhccccc--ccccccchH
Confidence 111111 1122222222222 223333333333222 211122222222211111 111 11111
Q ss_pred HHHHH---HhccCchhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043480 165 ALVVG---LCGDGKVDLAYELTVGAMKGK--VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNY 239 (493)
Q Consensus 165 ~l~~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 239 (493)
.+... ....+++++|.+.|+...+.+ .+.....++.+...+...|++++|+..+++..... +.....|..+...
T Consensus 296 ~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~ 374 (615)
T TIGR00990 296 QLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASM 374 (615)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 11111 123478889999999988754 23345677888888889999999999999988763 3446678888888
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHH
Q 043480 240 YCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRA 319 (493)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 319 (493)
+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|.+.+...+. +...+..+...+.+.|++++|
T Consensus 375 ~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHH
Confidence 889999999999999988754 456778888889999999999999999999887654 666777888889999999999
Q ss_pred HHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------HhHHHHHHHHHccCCHhHHHHHH
Q 043480 320 YKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDR------ILYTTIIDCLCKSREIGTAYGVF 393 (493)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~ 393 (493)
+..|+...+.. +.+...+..+...+...|++++|...|+...+.....+. ..++.....+...|++++|..++
T Consensus 453 ~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 453 MATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999988763 336778888899999999999999999998865321111 12222333344568999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 394 LDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 394 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
++.++.. +.+...+..+...+...|++++|+..|++..+.
T Consensus 532 ~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 532 EKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9988763 334557888999999999999999999998764
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=6.6e-18 Score=162.57 Aligned_cols=451 Identities=10% Similarity=-0.008 Sum_probs=329.6
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF-SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
|..+.+....+....++|+++.|+..|+++.+.+ |.+ +..+ .++..+...|+.++|+..+++..... +........
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~lla 107 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLAS 107 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHH
Confidence 3444555556667889999999999999999876 333 2344 88888889999999999999998321 222333333
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACA 164 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 164 (493)
+...+...|++ ++|+++++++.+. .+.+...+..++..+...++.++|++.++++... .|+...+.
T Consensus 108 lA~ly~~~gdy-----------d~Aiely~kaL~~-dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l 173 (822)
T PRK14574 108 AARAYRNEKRW-----------DQALALWQSSLKK-DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYM 173 (822)
T ss_pred HHHHHHHcCCH-----------HHHHHHHHHHHhh-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHH
Confidence 45678888999 7788999999886 3445777778889999999999999999999876 46666665
Q ss_pred HHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH------HHHHH
Q 043480 165 ALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTY------NAILN 238 (493)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~ll~ 238 (493)
.++..+...++..+|++.++++.+.. +.+...+..+..+..+.|-...|+++..+-... +.+....+ ...++
T Consensus 174 ~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr 251 (822)
T PRK14574 174 TLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVR 251 (822)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHh
Confidence 55555555667766999999999985 557888889999999999999999877653321 11111111 11111
Q ss_pred HH-----HccCChHH---HHHHHHHHHHC-C-CCCChhhH----HHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHH
Q 043480 239 YY-----CDEVMLDE---AEKLVMEMESC-G-IEPDVYSY----NQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYN 304 (493)
Q Consensus 239 ~~-----~~~~~~~~---a~~~~~~~~~~-~-~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 304 (493)
.- ....++.. |..-++.+... + .++....| .-.+-++...+++.+++..++.+...+......+-.
T Consensus 252 ~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 252 MAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred hcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 10 01223333 44444444431 1 22222222 223456778899999999999999877655667888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-----CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------CC
Q 043480 305 TVIEAFCKGGQTRRAYKLFEGMRRRGI-----ELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNL-----------SP 368 (493)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~ 368 (493)
.+..+|...+++++|..+|+.+..... .++......|..++...+++++|..+++.+.+... .|
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 899999999999999999999976531 22344457889999999999999999999987321 12
Q ss_pred CH---HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHH
Q 043480 369 DR---ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFK 444 (493)
Q Consensus 369 ~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~ 444 (493)
++ ..+..++..+...|++.+|++.++.+.... +-|......+...+...|.+.+|++.++..... .| +..+..
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~ 488 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILER 488 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHH
Confidence 21 234556777888999999999999998763 568889999999999999999999999887764 45 678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043480 445 LLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAA 480 (493)
Q Consensus 445 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 480 (493)
..+.++...|++++|..+.+.+.+. .|+......
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~ 522 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISR--SPEDIPSQE 522 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHH
Confidence 8999999999999999999999865 555544443
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=8.3e-19 Score=161.83 Aligned_cols=448 Identities=12% Similarity=0.053 Sum_probs=339.7
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcC--
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNC--RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLT-- 78 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 78 (493)
...+.||.+.+.|...|.-.|++..+.++...+..... ..-..+|..+.+++-.+|++++|...|.+..+.. ++
T Consensus 264 ~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~ 341 (1018)
T KOG2002|consen 264 KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNF 341 (1018)
T ss_pred hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCc
Confidence 34678999999999999999999999999988876431 1113347888999999999999999999988764 33
Q ss_pred hhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC----CHHHHHHHHHHHHHC
Q 043480 79 PFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAK----EFDKAVQAWEHMIEN 154 (493)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~ 154 (493)
...+--+.+.+...|+. +.+...|+.+... .+.+..+.-.|...|...+ ..+.|..++.+..+.
T Consensus 342 ~l~~~GlgQm~i~~~dl-----------e~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDL-----------EESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred cccccchhHHHHHhchH-----------HHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 34455678899999999 5666777777764 4445667777777777664 567777887777765
Q ss_pred CCCCCHHhHHHHHHHHhccCchhHHHHHHHHHH----hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC
Q 043480 155 GIKPDNKACAALVVGLCGDGKVDLAYELTVGAM----KGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWN---GCE 227 (493)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 227 (493)
- +.|...|..+...+....-+.. +..+..+. ..+.++.+...|.+...+...|+++.|...|...... ...
T Consensus 410 ~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 410 T-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred c-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 3 4477888888888776655544 66665544 3444577889999999999999999999999988765 112
Q ss_pred CCH------HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh
Q 043480 228 PDL------VTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKV 301 (493)
Q Consensus 228 ~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 301 (493)
++. .+--.+....-..++.+.|.++|..+.+.. +.-...|..++.+....+...+|...+......... ++.
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~ 565 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPN 565 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcH
Confidence 222 223334555666789999999999998753 223344555554444567888999999888876543 777
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcCHhHHHHHHHHHHH------------cCCHHHHHHHHHHHHhCCCCC
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRRG-IELDVVTFTILIKAFLR------------EGSSAMAEKLLNQMRGMNLSP 368 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~ 368 (493)
.+..+...+.....+..|.+-|..+.+.- ..+|..+.-.|.+.|.. .+..++|+.+|..+.+.. |.
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pk 644 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PK 644 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cc
Confidence 78888888888888888888777776542 23566666666665542 345788999999998876 67
Q ss_pred CHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHH
Q 043480 369 DRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR-GAHPDEVTFKLLI 447 (493)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~ 447 (493)
|...-|.+.-.++..|+++.|..+|.+..+... -...+|-.+.++|...|++..|+++|+...+. .-.-+..+...|.
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 888888899999999999999999999998742 35678899999999999999999999988654 3334789999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 043480 448 GGLVQEKKLELACRLWDQMMEKG 470 (493)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~~ 470 (493)
+++.+.|++.+|.+.+..+....
T Consensus 724 ra~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 724 RAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhC
Confidence 99999999999999999988763
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.8e-18 Score=157.54 Aligned_cols=412 Identities=11% Similarity=0.062 Sum_probs=252.7
Q ss_pred hHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHhcc
Q 043480 61 DLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGR--EPDVVTYTIVIDGLCKA 138 (493)
Q Consensus 61 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~ 138 (493)
..+..++...-..+ +.||.+.+.|...+...|+++.++ .+...+..... ..-..+|-.+.++|-..
T Consensus 253 ~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~-----------~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVW-----------HLAEHAIKNTENKSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHH-----------HHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 33444444433332 345555566666666666665444 33333332211 11234566788888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----CHH
Q 043480 139 KEFDKAVQAWEHMIENGIKPDN--KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTG----RIR 212 (493)
Q Consensus 139 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~ 212 (493)
|++++|...|-...+. .|+. ..+.-+...+...|+++.+...|+.+.+.. +.+..+...|...|...+ ..+
T Consensus 321 Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d 397 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRD 397 (1018)
T ss_pred ccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHH
Confidence 8888888888776654 3333 445567788888888888888888887764 445555566666666553 345
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH----HHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 043480 213 RAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEM----ESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFM 288 (493)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 288 (493)
.|..++.+....- +.|...|-.+...+-.. +...+...|..+ ...+.++.+...|.+...+...|+++.|...|
T Consensus 398 ~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 398 KASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF 475 (1018)
T ss_pred HHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence 5666665555443 44555565555544333 333334444432 33444456666677777777777777777766
Q ss_pred HHHHHc---CCCCChh-------hHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------------
Q 043480 289 VKKMEA---KGLRDKV-------SYNTVIEAFCKGGQTRRAYKLFEGMRRRG---------------------------- 330 (493)
Q Consensus 289 ~~~~~~---~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------- 330 (493)
...... ...++.. -|| +...+-..++.+.|.+.|..+.+..
T Consensus 476 ~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk 554 (1018)
T KOG2002|consen 476 KSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLK 554 (1018)
T ss_pred HHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHH
Confidence 666544 1111221 122 2222333344444444444444331
Q ss_pred -----CCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHc------------cCCHhHHHHH
Q 043480 331 -----IELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM-NLSPDRILYTTIIDCLCK------------SREIGTAYGV 392 (493)
Q Consensus 331 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~ 392 (493)
...++..++.+...+.....+..|..-|..+.+. ...+|..+...|.+.|.. .+..+.|+++
T Consensus 555 ~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~ 634 (1018)
T KOG2002|consen 555 DALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQL 634 (1018)
T ss_pred HHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 1223444444555555555555555555544432 113555555566665532 2346789999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC
Q 043480 393 FLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK-GF 471 (493)
Q Consensus 393 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~ 471 (493)
|.++++.. +-|...-|.+.-+++..|++.+|..+|.+..+... -+..+|-.+..+|..+|++..|.++|+...+. ..
T Consensus 635 y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~ 712 (1018)
T KOG2002|consen 635 YGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK 712 (1018)
T ss_pred HHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99998863 55778888899999999999999999999988643 26778999999999999999999999999887 44
Q ss_pred CCCHHHHHHHHHHHhhchhcc
Q 043480 472 TLDKTVSAALIEAIHLQDAAN 492 (493)
Q Consensus 472 ~~~~~~~~~ll~~~~~~~~~~ 492 (493)
+-++.+...|-+++...|.+.
T Consensus 713 ~~~~~vl~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 713 KNRSEVLHYLARAWYEAGKLQ 733 (1018)
T ss_pred cCCHHHHHHHHHHHHHhhhHH
Confidence 556788888999988887654
No 26
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=4.7e-16 Score=132.69 Aligned_cols=451 Identities=14% Similarity=0.098 Sum_probs=345.3
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
.+...|...++.=..++++..|+.+|++++..+ ..+...|...+.+-.++.+...|..++++....-+..| ..|...+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHH
Confidence 445566666777777889999999999999887 67788899999999999999999999999987632223 3455555
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAAL 166 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (493)
..--..|+. ..|.++|++... ..|+..+|++.+..-.+.+..+.|..+|++.+-- .|+..+|...
T Consensus 149 ymEE~LgNi-----------~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wiky 213 (677)
T KOG1915|consen 149 YMEEMLGNI-----------AGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKY 213 (677)
T ss_pred HHHHHhccc-----------HHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHH
Confidence 555667887 678899999987 7899999999999999999999999999999864 6999999999
Q ss_pred HHHHhccCchhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHc
Q 043480 167 VVGLCGDGKVDLAYELTVGAMKGK--VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPD--LVTYNAILNYYCD 242 (493)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~ 242 (493)
.+.-.+.|....+..+|....+.- -..+...+.+....-.++..++.|.-+|.-....= +.+ ...|......--+
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKq 292 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQ 292 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHH
Confidence 999999999999999999887631 12234456666666667888999999999888762 323 3345555544445
Q ss_pred cCChHHHHHHH--------HHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHH-----
Q 043480 243 EVMLDEAEKLV--------MEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDK-VSYNTVIE----- 308 (493)
Q Consensus 243 ~~~~~~a~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~----- 308 (493)
-|+.....+.. +.+.+.+ +.|-.+|--.++.-...|+.+...++|++++...++.+. ..|...|-
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinY 371 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINY 371 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH
Confidence 56655544432 3333332 456777888888888899999999999999986544221 12222221
Q ss_pred ---HHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHH----HHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 043480 309 ---AFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAF----LREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLC 381 (493)
Q Consensus 309 ---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (493)
.-....+++.+.++|+...+. ++....||.-+--.| .++.+...|.+++.... |.-|...+|...|..-.
T Consensus 372 alyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelEl 448 (677)
T KOG1915|consen 372 ALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELEL 448 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHH
Confidence 113468899999999999885 566677776654444 46789999999999887 45789999999999999
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 043480 382 KSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGA-HPDEVTFKLLIGGLVQEKKLELAC 460 (493)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~ 460 (493)
+.++++.+..+|++.++.+ +-|..+|......-...|+.+.|..+|+-+++... ......|...|+--...|.++.|.
T Consensus 449 qL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR 527 (677)
T ss_pred HHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH
Confidence 9999999999999999975 44677888888877889999999999999987521 224667788888888999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH
Q 043480 461 RLWDQMMEKGFTLDKTVSAALI 482 (493)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~ll 482 (493)
.+++++++. .+...+|.++.
T Consensus 528 ~LYerlL~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 528 ALYERLLDR--TQHVKVWISFA 547 (677)
T ss_pred HHHHHHHHh--cccchHHHhHH
Confidence 999999986 34445666554
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=4.8e-16 Score=149.92 Aligned_cols=425 Identities=13% Similarity=0.067 Sum_probs=303.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcCh--hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCC
Q 043480 44 SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTP--FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGR 121 (493)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~ 121 (493)
+.+...-+-...+.|+++.|+..|++.++.. |+. ..+ .++..+...|+. ++|+..+++.... .
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~-----------~~A~~~~eka~~p-~ 98 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRD-----------QEVIDVYERYQSS-M 98 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCc-----------HHHHHHHHHhccC-C
Confidence 3333444456679999999999999998874 442 344 888888888999 6677778877521 1
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHH
Q 043480 122 EPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNAL 201 (493)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (493)
+........+...+...|++++|+++|+++.+... .+...+..++..+...++.++|++.+..+... .|+...+..+
T Consensus 99 n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~l 175 (822)
T PRK14574 99 NISSRGLASAARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTL 175 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHH
Confidence 22233344446688889999999999999998742 34677778888899999999999999999876 4455555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhh------HHHHHHHH
Q 043480 202 ISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYS------YNQLLKGL 275 (493)
Q Consensus 202 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~ 275 (493)
+..+...++..+|++.++++.... +.+...+..+..+..+.|-...|.++..+-...- .+.... ...+++.-
T Consensus 176 ayL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a 253 (822)
T PRK14574 176 SYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMA 253 (822)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhc
Confidence 555555667767999999999885 5567788888899999999988887776533211 111100 11111110
Q ss_pred ---H--ccC---CHHHHHHHHHHHHHcCCC-CCh-hh----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHH
Q 043480 276 ---C--NSN---QLDKAYMFMVKKMEAKGL-RDK-VS----YNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTIL 341 (493)
Q Consensus 276 ---~--~~~---~~~~a~~~~~~~~~~~~~-~~~-~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 341 (493)
. ... -.+.|+.-++.+...-.. |.. .. ..-.+-++...|++.++++.|+.+...+.+....+-..+
T Consensus 254 ~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 254 VLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 0 111 234566666666653221 221 11 122345677889999999999999988876566788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCC-----------CCCH
Q 043480 342 IKAFLREGSSAMAEKLLNQMRGMN-----LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGI-----------TPDV 405 (493)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~~ 405 (493)
..+|...+.+++|..++..+.... .+++......|..+|...+++++|..+++.+.+... .||.
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 999999999999999999987642 123444467899999999999999999999987411 1222
Q ss_pred ---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 043480 406 ---ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLD-KTVSAAL 481 (493)
Q Consensus 406 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l 481 (493)
..+..++..+...|+..+|++.++++....+. |......+.+.+...|.+.+|.+.++.+... .|+ ..+....
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~ 490 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQ 490 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHH
Confidence 23345677788999999999999999875322 8999999999999999999999999877754 555 4555555
Q ss_pred HHHHhhchhc
Q 043480 482 IEAIHLQDAA 491 (493)
Q Consensus 482 l~~~~~~~~~ 491 (493)
..++...+++
T Consensus 491 ~~~al~l~e~ 500 (822)
T PRK14574 491 AETAMALQEW 500 (822)
T ss_pred HHHHHhhhhH
Confidence 5555555544
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=3.9e-17 Score=137.41 Aligned_cols=369 Identities=17% Similarity=0.164 Sum_probs=254.0
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhH
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTY 82 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (493)
+..|-.+.+|..+|...++-...+.|.+++++......+.+..+||.+|.+-.- ....++..+|......||..|+
T Consensus 201 E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 201 ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhH
Confidence 456788899999999999999999999999999887778899999999876533 3338899999999999999999
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHH-HHHHHHHHHH----CCCC
Q 043480 83 SRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDK-AVQAWEHMIE----NGIK 157 (493)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~ 157 (493)
|.++++.++.|+++.|+ ..|++++.+|.+.|+.|...+|..+|..+.+.+++.+ +..+...+.. ..++
T Consensus 277 NalL~c~akfg~F~~ar-------~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDAR-------KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred HHHHHHHHHhcchHHHH-------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 99999999999999888 8899999999999999999999999999999888755 3333344332 2222
Q ss_pred ---C-CHHhHHHHHHHHhccCchhHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043480 158 ---P-DNKACAALVVGLCGDGKVDLAYELTVGAMKGK----VEFG---VLIYNALISGFCRTGRIRRAMAIKSFMKWNGC 226 (493)
Q Consensus 158 ---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 226 (493)
| |...|...+..|.+..+.+-|.++..-+.... +.++ ..-|..+....++....+.-..+|+.|.-.-.
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 2 34566777788888888888888766554321 2222 23455677777788888888889998887777
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 043480 227 EPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTV 306 (493)
Q Consensus 227 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 306 (493)
-|+..+...++++....+.++-..+++..+...|.........-++..+ ....+.|+...-..+
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L----------------~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLL----------------ARDKLHPLTPEREQL 493 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHH----------------hcCCCCCCChHHHHH
Confidence 7888888888888888888888888888888766433333222222222 222222221111111
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHhHH---HHHHHH
Q 043480 307 IEAFCKG--GQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM-NLSPDRILYT---TIIDCL 380 (493)
Q Consensus 307 ~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~---~l~~~~ 380 (493)
-....+. .-.+.....-.++.+.. ......+.++-.+.+.|..++|.++|..+.+. +--|-....+ -+++.-
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a 571 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSA 571 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHH
Confidence 1111110 11111222223344433 34455666666778888888888888887542 2223333334 455555
Q ss_pred HccCCHhHHHHHHHHHHhCC
Q 043480 381 CKSREIGTAYGVFLDMVEQG 400 (493)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~ 400 (493)
...++...|..+++-+...+
T Consensus 572 ~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 572 KVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HhcCCHHHHHHHHHHHHHcC
Confidence 66677777777777776653
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=2.5e-15 Score=126.74 Aligned_cols=442 Identities=14% Similarity=0.151 Sum_probs=302.6
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH--HHhcCChhHH-HHHHHHhccCCCCcChhhHHHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGV--LIRHSRFDLV-QFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l 85 (493)
.++=+.|++ .+.+|.+.++--+|+.|.+.|.+.+...-..+.+. |-.+.+..-| .+.|-.|...| ..+..+|.
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sWK-- 191 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSWK-- 191 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-cccccccc--
Confidence 344455555 45567777888888888877777666666555543 2333333322 34455555544 23333332
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 043480 86 ISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAA 165 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (493)
.|+. |. ++-+. .+....++..+|.+.++--..+.|.++|++-.....+.+..+++.
T Consensus 192 ------~G~v-------------Ad-L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~ 247 (625)
T KOG4422|consen 192 ------SGAV-------------AD-LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNG 247 (625)
T ss_pred ------cccH-------------HH-HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhh
Confidence 2322 22 33333 455778999999999999999999999999988777889999999
Q ss_pred HHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043480 166 LVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRA----MAIKSFMKWNGCEPDLVTYNAILNYYC 241 (493)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~ll~~~~ 241 (493)
+|.+-.-... .++..+|......||..++|+++++..+.|+++.| .+++.+|++.|+.|...+|..+|..+.
T Consensus 248 lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~ 323 (625)
T KOG4422|consen 248 LIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFK 323 (625)
T ss_pred hhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhc
Confidence 9877543322 67888899888999999999999999999987654 678889999999999999999999998
Q ss_pred ccCChHH-HHHHHHHHHH----CCC----CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC----CC---hhhHHH
Q 043480 242 DEVMLDE-AEKLVMEMES----CGI----EPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGL----RD---KVSYNT 305 (493)
Q Consensus 242 ~~~~~~~-a~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~---~~~~~~ 305 (493)
+.++..+ +..++.++.. ..+ +.+...|...+..|.+..+.+.|..+..-....... ++ ..-|..
T Consensus 324 re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~ 403 (625)
T KOG4422|consen 324 RESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRK 403 (625)
T ss_pred ccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHH
Confidence 8887754 4444444432 122 234456677788888888888887765444332111 11 123556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC-
Q 043480 306 VIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSR- 384 (493)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 384 (493)
+....++....+.-...|+.|.-.-.-|+..+...++++....+.++-.-++|.+++..|...+...-..++..+++..
T Consensus 404 ~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~ 483 (625)
T KOG4422|consen 404 FFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL 483 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC
Confidence 6677788888999999999998877788999999999999999999999999998888775555554445555554433
Q ss_pred CH--------hH-----HHHH-------HHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCH
Q 043480 385 EI--------GT-----AYGV-------FLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGA----HPDE 440 (493)
Q Consensus 385 ~~--------~~-----a~~~-------~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~p~~ 440 (493)
.. .. |..+ -.++.+. .......+..+..+.+.|..++|.+++.-+.+.+- .|..
T Consensus 484 hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~l 561 (625)
T KOG4422|consen 484 HPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLL 561 (625)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcch
Confidence 11 00 1111 1222233 33445667777788999999999999999865432 2344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043480 441 VTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEA 484 (493)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 484 (493)
....-+++...+..+...|..+++-|...+++.-...-.-+...
T Consensus 562 nAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~ 605 (625)
T KOG4422|consen 562 NAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMED 605 (625)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHh
Confidence 44556778888889999999999999876554333333333333
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.84 E-value=5.9e-15 Score=131.00 Aligned_cols=431 Identities=9% Similarity=0.032 Sum_probs=260.9
Q ss_pred cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHH
Q 043480 22 AGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINIL 101 (493)
Q Consensus 22 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 101 (493)
.-+.+.|+.++.++.+. .|.+...|. +|.+..-|+.|..+++..++. ++-++..|..-...--..|+.+....+
T Consensus 389 lE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 389 LEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred ccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 34444555555555554 233333332 333444555555555555442 344445555544444455555444444
Q ss_pred HHHHH----------------------------HHHHHHHHHHHhCCCCC--CHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 043480 102 LDNMD----------------------------KLALEVFHKMVSKGREP--DVVTYTIVIDGLCKAKEFDKAVQAWEHM 151 (493)
Q Consensus 102 ~~~~~----------------------------~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 151 (493)
+++-. -.+..+....+..|+.- -..+|+.-...|.+.+-++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 44332 23344444444444432 2457777777777888888888888777
Q ss_pred HHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 043480 152 IENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLV 231 (493)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 231 (493)
++- ++-+...|......--..|..++...+|++....- +.....|......+-..|+...|..++....+.. +.+..
T Consensus 543 lqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnsee 619 (913)
T KOG0495|consen 543 LQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEE 619 (913)
T ss_pred Hhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHH
Confidence 764 23344555555555556677777777777777653 4455566666666677788888888887777664 44667
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 043480 232 TYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFC 311 (493)
Q Consensus 232 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (493)
.|...+..-.....++.|..+|.+.... .|+..+|.--+..---.+..++|+.++++.++..+. -...|..+.+.+-
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHH
Confidence 7777777777778888888888777663 466667766666666677788888888777776433 3345666677777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHH
Q 043480 312 KGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYG 391 (493)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 391 (493)
+.++.+.|.+.|..-.+. ++.....|..+...--+.|+.-.|..+++...-.+ +.+...|-..|++-.+.|+.+.|..
T Consensus 697 ~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHH
Confidence 777777777777766654 33344556666666667778888888888777665 6677788888888888888888887
Q ss_pred HHHHHHhCCCCCCHhhHHHHH------------------------------HHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 043480 392 VFLDMVEQGITPDVISYNALI------------------------------NGLCKSSRVSEAMHLYEEMQIRGAHPDEV 441 (493)
Q Consensus 392 ~~~~~~~~~~~p~~~~~~~l~------------------------------~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 441 (493)
+..+.++. ++.+...|..-| ..+....+++.|...|.+..+.+.. +..
T Consensus 775 lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD 852 (913)
T KOG0495|consen 775 LMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGD 852 (913)
T ss_pred HHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cch
Confidence 77777654 233333444433 3444444455555555555443211 344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 442 TFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 442 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
+|.-+...+.++|.-++-.+++.+...
T Consensus 853 ~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 853 AWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 444444445555554444445444443
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=4.3e-16 Score=132.36 Aligned_cols=460 Identities=11% Similarity=0.108 Sum_probs=308.7
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHH-HHHHHHHhcCChhHHHHHHHHhccCCCCcCh----hhHHH
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYN-RFIGVLIRHSRFDLVQFYYQQMHPLGFSLTP----FTYSR 84 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 84 (493)
.+...|++-|..+....+|+..|+-+.+...-|+.-... .+...+.+.+++.+|+++|+-.+..-++.+. ...+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 345567888888899999999999888766566655443 3557888999999999999988876333332 34455
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN---- 160 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 160 (493)
+.-.+.+.|++ +.|+..|+...+ ..|+..+-..|+-++..-|+-++..+.|.+|+.-...||.
T Consensus 282 igvtfiq~gqy-----------~dainsfdh~m~--~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi 348 (840)
T KOG2003|consen 282 IGVTFIQAGQY-----------DDAINSFDHCME--EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI 348 (840)
T ss_pred cCeeEEecccc-----------hhhHhhHHHHHH--hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc
Confidence 55567788999 677788888777 4677776666666777889999999999999865333332
Q ss_pred --------HhHHHHH-----HHHhccCc--hhHHHHHHHHHHhCCCCCChh-------------hHH--------HHHHH
Q 043480 161 --------KACAALV-----VGLCGDGK--VDLAYELTVGAMKGKVEFGVL-------------IYN--------ALISG 204 (493)
Q Consensus 161 --------~~~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~-------------~~~--------~l~~~ 204 (493)
...+..+ ....+.+. .+.++-.-.+++.--+.|+.. .+. .-..-
T Consensus 349 ~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~ 428 (840)
T KOG2003|consen 349 KEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGE 428 (840)
T ss_pred CCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence 2222222 11111111 112221111121111122210 010 11234
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHH
Q 043480 205 FCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAI--LNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLD 282 (493)
Q Consensus 205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 282 (493)
+.++|+++.|.++++-+.+..-+.-...-+.+ +..+.-..++..|.+.-+...... .-++.....-.+.....|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence 77899999999999888765423222223332 233333456777777776665432 123333333334455688999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043480 283 KAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMR 362 (493)
Q Consensus 283 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 362 (493)
+|.+.+++.+.....-....||. .-.+-..|+.++|++.|-++..- ...+...+..+...|-...+...|++++-+..
T Consensus 508 ka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 99999998887533222222332 33456678999999988776543 23367777788888888899999999887776
Q ss_pred hCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 043480 363 GMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVT 442 (493)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 442 (493)
.. ++.|+.+++.+...|-+.|+-..|.+.+-.--.. ++-+..+...|...|....-+++++.+|++..- ++|+..-
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~k 661 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSK 661 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHH
Confidence 54 4778889999999999999999998887665554 566788888888888888888999999998754 6789999
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhchh
Q 043480 443 FKLLIGGLV-QEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDA 490 (493)
Q Consensus 443 ~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 490 (493)
|..++..|. +.|++..|..+++...+ .++-|...+.-|++-+...|.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 988876554 57999999999998877 478888888888887766553
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=2.4e-14 Score=131.96 Aligned_cols=368 Identities=13% Similarity=0.111 Sum_probs=264.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
....+......|++++|.+++.++++.+ |.+...|..|..+|-.+|+.+++...+-.+-..+ +.|...|..+......
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHh
Confidence 3444555666699999999999999997 7888999999999999999999998887765554 5566889999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH----hHHHHH
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNK----ACAALV 167 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~ 167 (493)
.|++ ++|.-.|.+.++. .+++....-.-+..|-+.|+...|.+-|.++.....+.|.. .....+
T Consensus 220 ~~~i-----------~qA~~cy~rAI~~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~ 287 (895)
T KOG2076|consen 220 LGNI-----------NQARYCYSRAIQA-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA 287 (895)
T ss_pred cccH-----------HHHHHHHHHHHhc-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 9999 6777888888876 45555555556778899999999999999998874322322 233345
Q ss_pred HHHhccCchhHHHHHHHHHHh-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------------
Q 043480 168 VGLCGDGKVDLAYELTVGAMK-GKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCE------------------- 227 (493)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------- 227 (493)
..+...++-+.|.+.+..... .+-..+...++.++..+.+...++.+......+......
T Consensus 288 ~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~ 367 (895)
T KOG2076|consen 288 HYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNAL 367 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccc
Confidence 556667777888888887776 222456677888999999999999999888777662222
Q ss_pred --------CCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 043480 228 --------PDLVTYNAILNYYCDEVMLDEAEKLVMEMESCG--IEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGL 297 (493)
Q Consensus 228 --------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 297 (493)
++..++ .+.-++.+....+....+........ ..-+...|.-+..++...|++..|+.+|..+....+.
T Consensus 368 ~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 368 CEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred ccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 222221 12223334444444444455555544 3335667788888999999999999999888887777
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh--------CCCCCC
Q 043480 298 RDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRG--------MNLSPD 369 (493)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~ 369 (493)
.+...|-.+..+|...|..++|.+.|+...... +-+...-..|...+.+.|+.++|.+.+..+.. ....|+
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e 525 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPE 525 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHH
Confidence 778888888999999999999999999888762 22444556666777888999999888887542 233455
Q ss_pred HHhHHHHHHHHHccCCHhHHHHHHHH
Q 043480 370 RILYTTIIDCLCKSREIGTAYGVFLD 395 (493)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 395 (493)
..........+.+.|+.++=..+...
T Consensus 526 ~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 526 RRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55555566666677776654443333
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.80 E-value=1.1e-13 Score=123.06 Aligned_cols=409 Identities=11% Similarity=0.005 Sum_probs=303.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhcc----CCCCcChhhHHHHHHHHh
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHP----LGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ll~~~~ 90 (493)
|--+|.+..-++.|.++++.+.+. +|.+..+|..-...--.+|+.+...++..+.+. .|+..+...|..=...|-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 445677778888999999998887 688888888888888888888888877766543 355555555555445554
Q ss_pred ccCChhhHHHHHHHHH--------------------------HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHH
Q 043480 91 EVKNFTLINILLDNMD--------------------------KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKA 144 (493)
Q Consensus 91 ~~~~~~~a~~~~~~~~--------------------------~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 144 (493)
..|..-....+....+ +-|..+|...++- ++.+...|......--..|..+.-
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHH
Confidence 4444433333333322 5567777777765 555677888887777778888888
Q ss_pred HHHHHHHHHCCCCCC-HHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 145 VQAWEHMIENGIKPD-NKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKW 223 (493)
Q Consensus 145 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 223 (493)
..+|.+.... .|. ...|.....-+...|+...|..++....+.. +-+...|-..+.....+..++.|..+|.+...
T Consensus 570 ~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 570 EALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 8899888876 333 3444555566677899999999999888876 44778888888888889999999999988876
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhH
Q 043480 224 NGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSY 303 (493)
Q Consensus 224 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 303 (493)
. .|+...|..-+..---.+..++|.+++++..+. ++.-...|..+.+.+.+.++.+.|...|..-....+. .+..|
T Consensus 647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~-~ipLW 722 (913)
T KOG0495|consen 647 I--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN-SIPLW 722 (913)
T ss_pred c--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC-CchHH
Confidence 5 677777776666666788899999999888764 2334566777778888888888888887666554332 55667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------------------
Q 043480 304 NTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM------------------- 364 (493)
Q Consensus 304 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------- 364 (493)
-.+...--+.|++-+|..+++.....++. +...|...+..-.+.|+.+.|..++.+..+.
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence 77777777788888899999888877544 7778888888888888888888777665432
Q ss_pred ----------CCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 365 ----------NLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 365 ----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
....|+.+.-.+...+.....++.|.+.|.+.++.+ +-+..+|..+...+..+|.-+.-.+++......
T Consensus 802 rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 802 RKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred cchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 112345556666777777788999999999999864 335678888999999999989899999998775
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=6.4e-14 Score=129.23 Aligned_cols=323 Identities=12% Similarity=0.053 Sum_probs=215.6
Q ss_pred CccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChh
Q 043480 1 MIQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPF 80 (493)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (493)
+|+..|.++..|..|...|-..|+.+++...+-.+-..+ |.|...|..+.....+.|++++|.-.|.++++.. +++..
T Consensus 165 vIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~ 242 (895)
T KOG2076|consen 165 VIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWE 242 (895)
T ss_pred HHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchH
Confidence 367788999999999999999999999999887777665 7778889999999999999999999999999886 55555
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHH----------------------------HHHHHHHHHHHhC-CCCCCHhhHHHH
Q 043480 81 TYSRFISGLCEVKNFTLINILLDNMD----------------------------KLALEVFHKMVSK-GREPDVVTYTIV 131 (493)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~----------------------------~~a~~~~~~~~~~-g~~~~~~~~~~l 131 (493)
.+-.-...|.+.|+...|...+.++. +.|.+.++..... +...+...++.+
T Consensus 243 ~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ 322 (895)
T KOG2076|consen 243 LIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNIL 322 (895)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHH
Confidence 55566777888888877666555544 3455555554442 223345567777
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHhH--------------------------HHHHHHHhccCchhHHHHHHHH
Q 043480 132 IDGLCKAKEFDKAVQAWEHMIENGIKPDNKAC--------------------------AALVVGLCGDGKVDLAYELTVG 185 (493)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------------------~~l~~~~~~~~~~~~a~~~~~~ 185 (493)
+..+.+...++.+......+......+|..-+ ..+.-++...+..+....+...
T Consensus 323 ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~ 402 (895)
T KOG2076|consen 323 AELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHF 402 (895)
T ss_pred HHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHH
Confidence 77777777777777777666552212221111 1223333444444444444444
Q ss_pred HHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 043480 186 AMKGK--VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEP 263 (493)
Q Consensus 186 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 263 (493)
+.... +.-+...|..+..+|...|++.+|+.+|..+.......+...|-.+..+|...|..++|.+.|+...... +.
T Consensus 403 l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~ 481 (895)
T KOG2076|consen 403 LVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PD 481 (895)
T ss_pred HHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CC
Confidence 44443 3345567778888888888888888888888876555566778888888888888888888888887643 33
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC--------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 043480 264 DVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAK--------GLRDKVSYNTVIEAFCKGGQTRRAYKLFEGM 326 (493)
Q Consensus 264 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 326 (493)
+...--.|...+.+.|+.++|.+.+..+...+ ..|+..........+.+.|+.++-+++...|
T Consensus 482 ~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 482 NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44455566677778888888888877754221 1112222333344555566665544444333
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=4.8e-13 Score=114.67 Aligned_cols=438 Identities=11% Similarity=0.036 Sum_probs=326.8
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
...+..+|...+.+=+++..+..|+.+++++...- |.-...|...+.+--..|+...|.++|++-.+- +|+..+|.+
T Consensus 103 d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~s 179 (677)
T KOG1915|consen 103 DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLS 179 (677)
T ss_pred ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHH
Confidence 34566788889999999999999999999998863 444456777777777899999999999999876 799999999
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH---
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNK--- 161 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 161 (493)
.+..-.+-+.+ +.|..++++.+- ++|++.+|-...+.-.++|+...|..+|+...+. -.|..
T Consensus 180 fI~fElRykei-----------eraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e 244 (677)
T KOG1915|consen 180 FIKFELRYKEI-----------ERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAE 244 (677)
T ss_pred HHHHHHHhhHH-----------HHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHH
Confidence 99999998888 566777777776 6899999999999999999999999999998864 12333
Q ss_pred -hHHHHHHHHhccCchhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCH---HHHHH-----HHHHHHHCCCCCCH
Q 043480 162 -ACAALVVGLCGDGKVDLAYELTVGAMKGKVEFG--VLIYNALISGFCRTGRI---RRAMA-----IKSFMKWNGCEPDL 230 (493)
Q Consensus 162 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~---~~a~~-----~~~~~~~~~~~~~~ 230 (493)
.+.+....-..+..++.|.-+|.-.++.- +.+ ...|..+...--+-|+. ++++- -|+.+.+.+ +.|-
T Consensus 245 ~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nY 322 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCc
Confidence 33333344456788899999998888753 222 44555555544455654 33332 244555554 7788
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCh--hhHHHHHH-----HH---HccCCHHHHHHHHHHHHHcCCCCCh
Q 043480 231 VTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDV--YSYNQLLK-----GL---CNSNQLDKAYMFMVKKMEAKGLRDK 300 (493)
Q Consensus 231 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-----~~---~~~~~~~~a~~~~~~~~~~~~~~~~ 300 (493)
.+|--.++.-...|+.+...++|+..... ++|-. ..|...+- ++ ....+.+.+.+++...++.-+. ..
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH-kk 400 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH-KK 400 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc-cc
Confidence 88888888888889999999999998864 44421 11222211 11 2467889999999888874332 44
Q ss_pred hhHHH----HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 043480 301 VSYNT----VIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTI 376 (493)
Q Consensus 301 ~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 376 (493)
.+|.- ....-.+..++..|.+++...+- .-|...+|...|..-.+.++++.+..+++...+.+ |.+..+|...
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ky 477 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKY 477 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHH
Confidence 44433 34444567889999999987764 46788889999998899999999999999999887 6788899999
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----
Q 043480 377 IDCLCKSREIGTAYGVFLDMVEQG-ITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV---- 451 (493)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~---- 451 (493)
...-...|+.+.|..+|.-+++.. +......|.+.|+--...|.++.|..+++++++. .+...+|.+...--.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccc
Confidence 988889999999999999988752 1222346777777777899999999999999885 345557766654333
Q ss_pred -hcC-----------CHHHHHHHHHHHHHc
Q 043480 452 -QEK-----------KLELACRLWDQMMEK 469 (493)
Q Consensus 452 -~~g-----------~~~~a~~~~~~~~~~ 469 (493)
+.+ ....|.++|+++...
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 333 466788888887654
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=8.6e-16 Score=130.56 Aligned_cols=422 Identities=14% Similarity=0.058 Sum_probs=286.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHH
Q 043480 13 RAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS----IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISG 88 (493)
Q Consensus 13 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 88 (493)
..+...+.+..++.+|++.|.-.+..-+..+- .+.+.+...+.+.|+|+.|+..|+...+. .|+..+-..|+-+
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~ 318 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIIC 318 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhh
Confidence 34566788899999999999887765322222 23444555678899999999999999876 5887766666666
Q ss_pred HhccCChhhHHHHHHHHHHHHHHHHHHHHhCC------------CCCCHhhHHHHHH-----HHhccC--CHHHHHHHHH
Q 043480 89 LCEVKNFTLINILLDNMDKLALEVFHKMVSKG------------REPDVVTYTIVID-----GLCKAK--EFDKAVQAWE 149 (493)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g------------~~~~~~~~~~l~~-----~~~~~~--~~~~a~~~~~ 149 (493)
+..-|+- ++-.+.|.+|+... ..|+....+..+. -.-+.+ +-++++-.-.
T Consensus 319 ~f~i~d~-----------ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~ 387 (840)
T KOG2003|consen 319 AFAIGDA-----------EKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAA 387 (840)
T ss_pred heecCcH-----------HHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 6677887 44556666665431 1223333332221 111111 1222222222
Q ss_pred HHHHCCCCCCHH-----h--------HH--------HHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHH-HHh
Q 043480 150 HMIENGIKPDNK-----A--------CA--------ALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISG-FCR 207 (493)
Q Consensus 150 ~~~~~~~~~~~~-----~--------~~--------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 207 (493)
+++.--+.|+-. + +. .-..-+.++|+++.|.+++.-..+..-......-+.|... |.+
T Consensus 388 kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flq 467 (840)
T KOG2003|consen 388 KIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQ 467 (840)
T ss_pred HHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHh
Confidence 222222233311 0 00 0123356889999999998877765433223333333322 233
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 043480 208 -TGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYM 286 (493)
Q Consensus 208 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 286 (493)
..++..|..+-+...... .-+......-.......|++++|.+.+++.....-......|+. .-.+...|++++|++
T Consensus 468 ggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald 545 (840)
T KOG2003|consen 468 GGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALD 545 (840)
T ss_pred cccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHH
Confidence 346888888877766432 33333333333444568999999999999987543333333333 235678899999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 043480 287 FMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNL 366 (493)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 366 (493)
.|-++...-. .+..+...+.+.|-...++..|++++.+.... ++.|+..++.+...|-+.|+...|...+-+--+. +
T Consensus 546 ~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-f 622 (840)
T KOG2003|consen 546 CFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-F 622 (840)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-c
Confidence 9988765322 26666777888888899999999999888765 6678999999999999999999998876544433 3
Q ss_pred CCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 043480 367 SPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGL-CKSSRVSEAMHLYEEMQIRGAHPDEVTFKL 445 (493)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 445 (493)
+.+..+...+...|....-++++..+|++..- +.|+..-|..++..| .+.|++..|..+++...+. ++-|...+..
T Consensus 623 p~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkf 699 (840)
T KOG2003|consen 623 PCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKF 699 (840)
T ss_pred CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHH
Confidence 77888999999999999999999999998765 589999999888655 4689999999999999775 5558999999
Q ss_pred HHHHHHhcCC
Q 043480 446 LIGGLVQEKK 455 (493)
Q Consensus 446 l~~~~~~~g~ 455 (493)
|++.+...|-
T Consensus 700 lvri~~dlgl 709 (840)
T KOG2003|consen 700 LVRIAGDLGL 709 (840)
T ss_pred HHHHhccccc
Confidence 9999988874
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.3e-13 Score=118.56 Aligned_cols=419 Identities=13% Similarity=0.028 Sum_probs=243.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHh
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF-SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (493)
+-...+-|.++|++++|++.|.++++.. |+ +.-|.....+|...|+|+++.+.--+.++.+ +.-+.++..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHH
Confidence 4445677888999999999999999864 55 6677788888999999999998888887754 233456666677777
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH-HHHHC--CCCCCHHhHHHHH
Q 043480 91 EVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWE-HMIEN--GIKPDNKACAALV 167 (493)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~--~~~~~~~~~~~l~ 167 (493)
..|+++++..-. .+.-+++.. . +..+--.+=+.+-+ .|..-.+ .+.+. .+-|+.....+..
T Consensus 195 ~lg~~~eal~D~-----tv~ci~~~F-----~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf 258 (606)
T KOG0547|consen 195 QLGKFDEALFDV-----TVLCILEGF-----Q-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYF 258 (606)
T ss_pred hhccHHHHHHhh-----hHHHHhhhc-----c-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 778775543110 111111111 1 11110000011111 1111111 12211 1234444333333
Q ss_pred HHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHH----h-cCCHHHHHHHHHHHHHC---CCC---CC------H
Q 043480 168 VGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFC----R-TGRIRRAMAIKSFMKWN---GCE---PD------L 230 (493)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~-~~~~~~a~~~~~~~~~~---~~~---~~------~ 230 (493)
..+...-. .....+.......+..++. . ...+..|...+.+-... ... .| .
T Consensus 259 ~sF~~~~~------------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A 326 (606)
T KOG0547|consen 259 GSFHADPK------------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMA 326 (606)
T ss_pred hhcccccc------------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHH
Confidence 33321100 0000000000111111110 0 00122222222211100 000 01 1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 043480 231 VTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAF 310 (493)
Q Consensus 231 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (493)
.+.......+.-.|+.-.+..-|+...+.... +...|-.+..+|....+.++....|.+.....+. ++.+|..-.+.+
T Consensus 327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMR 404 (606)
T ss_pred HHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHH
Confidence 12222222344567778888888888775422 2233666777788888888888888888776654 667777777777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHH
Q 043480 311 CKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAY 390 (493)
Q Consensus 311 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 390 (493)
.-.+++++|..=|++.+...+. +...|..+.-+..+.+.++++...|++.++. +|..+..|+.....+...++++.|.
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHH
Confidence 7788888888888888776332 5556666666667788888888888888764 3666778888888888888888888
Q ss_pred HHHHHHHhCCCCCC---------HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043480 391 GVFLDMVEQGITPD---------VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACR 461 (493)
Q Consensus 391 ~~~~~~~~~~~~p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 461 (493)
+.|+..++. .|+ +.+-..++. +.-.+++..|.+++++..+.+.+ ....|..|...-.+.|+.++|++
T Consensus 483 k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 483 KQYDKAIEL--EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred HHHHHHHhh--ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHH
Confidence 888888764 222 111122222 22347888888888888875433 56778888888888888888888
Q ss_pred HHHHHHHc
Q 043480 462 LWDQMMEK 469 (493)
Q Consensus 462 ~~~~~~~~ 469 (493)
+|++....
T Consensus 559 lFEksa~l 566 (606)
T KOG0547|consen 559 LFEKSAQL 566 (606)
T ss_pred HHHHHHHH
Confidence 88887653
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1e-12 Score=112.39 Aligned_cols=312 Identities=12% Similarity=0.042 Sum_probs=235.2
Q ss_pred HHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccC
Q 043480 167 VVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGC--EPDLVTYNAILNYYCDEV 244 (493)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~ 244 (493)
..++....+.+++..-.......|.+.+...-+....+.-...+++.|+.+|+++.+... -.|..+|..++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 344555557777777777777777665555555556666677889999999999887631 124566766663322211
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 043480 245 MLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFE 324 (493)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 324 (493)
....+.+-...-.+--+.|...+.+-|.-.++.++|...|+++++-++. ....|+.+..-|....+...|.+-|+
T Consensus 314 ----kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 ----KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred ----HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 1122222111111234567778888888899999999999999987654 66789999999999999999999999
Q ss_pred HHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC
Q 043480 325 GMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD 404 (493)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 404 (493)
...+-++ .|-..|-.+.++|...+.+.=|+-.|++..+.. |.|...|.+|..+|.+.++.++|...|.+....| ..+
T Consensus 389 rAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 9998754 488999999999999999999999999999876 7889999999999999999999999999999876 336
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043480 405 VISYNALINGLCKSSRVSEAMHLYEEMQIR----GAH-P-DEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVS 478 (493)
Q Consensus 405 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 478 (493)
...+..|...|-+.++.++|.+.|++.++. |.. | .....--|..-+.+.+++++|......... | .+...--
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~-~~e~eea 543 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G-ETECEEA 543 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C-CchHHHH
Confidence 688999999999999999999999887552 222 2 123333356777889999999888777765 3 6777777
Q ss_pred HHHHHHHhhc
Q 043480 479 AALIEAIHLQ 488 (493)
Q Consensus 479 ~~ll~~~~~~ 488 (493)
+.|++.+++.
T Consensus 544 k~LlReir~~ 553 (559)
T KOG1155|consen 544 KALLREIRKI 553 (559)
T ss_pred HHHHHHHHHh
Confidence 8888877654
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.4e-12 Score=114.37 Aligned_cols=468 Identities=11% Similarity=0.022 Sum_probs=324.5
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
-+..-+..+++-+..+.++..|.-+-+++...+ .++..-..+++++.-.|+++.|..+...-.-. ..|..+.....
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~ 89 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAA 89 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHH
Confidence 345567777888888889999998888887754 56666777888888899999988887765332 46677777777
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC---CCCCC-----------HhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSK---GREPD-----------VVTYTIVIDGLCKAKEFDKAVQAWEHMI 152 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~---g~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (493)
.++.+..+++.+..++.... .....|..-... -..+| ...+-.-...|....++++|...|.+..
T Consensus 90 ~~l~~lk~~~~al~vl~~~~-~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al 168 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGH-VETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEAL 168 (611)
T ss_pred HHHHHHHHHHHHHHHhcccc-hhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHH
Confidence 88888888977776665321 011111110000 01111 1111112234455566777777777766
Q ss_pred HCCCCCCHHhHHHHHHHHhcc-----------------C-chhHHHHHHHHHHh----------------CCCCCChhhH
Q 043480 153 ENGIKPDNKACAALVVGLCGD-----------------G-KVDLAYELTVGAMK----------------GKVEFGVLIY 198 (493)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~-----------------~-~~~~a~~~~~~~~~----------------~~~~~~~~~~ 198 (493)
...+. ....+..++....-. + +.+.-...|+.... .+...+....
T Consensus 169 ~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll 247 (611)
T KOG1173|consen 169 LADAK-CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLL 247 (611)
T ss_pred hcchh-hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHH
Confidence 54221 222222222221110 0 11111111221100 0112233444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 043480 199 NALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNS 278 (493)
Q Consensus 199 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 278 (493)
..-..-+...+++.+..++.+...... +++...+-.-|.++...|+..+...+=..+.+. .|..+.+|-++.-.|...
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHh
Confidence 455566777899999999999998775 677777777777888899888887777777765 356788999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHH
Q 043480 279 NQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLL 358 (493)
Q Consensus 279 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 358 (493)
|+..+|++.|.+...-.+. =...|-.....|+-.|..++|+..|....+. ++-....+--+.--|.+.++.+.|.+.|
T Consensus 326 ~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred cCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999998776443 3456888889999999999999999888765 2212223334555678899999999999
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhC--CC----CCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043480 359 NQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQ--GI----TPDVISYNALINGLCKSSRVSEAMHLYEEMQ 432 (493)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 432 (493)
.+..... |.|+..++-+.-.....+.+.+|...|+..++. .+ .--..+++.|..+|.+.+.+++|+..+++.+
T Consensus 404 ~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 404 KQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 9998765 677888888888778889999999999987732 01 1134568899999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 043480 433 IRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQ 488 (493)
Q Consensus 433 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 488 (493)
....+ +..++.++.-.|...|+++.|...|.+.+ .+.|+..+.+.++..+-..
T Consensus 483 ~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 483 LLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred HcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 86333 89999999999999999999999999998 6799998888888765443
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=4e-17 Score=141.60 Aligned_cols=270 Identities=15% Similarity=0.055 Sum_probs=73.0
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSN-CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
..+.|+...+ .++..+.+.|++++|++++++..... .+.++..|..+.......++++.|+..++++...+ +.++..
T Consensus 3 ~~~~~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~ 80 (280)
T PF13429_consen 3 AEFGPSEEAL-RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQD 80 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 3444443333 56778888888888888885544332 24455555566666677778888888888887765 335555
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCH
Q 043480 82 YSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG-IKPDN 160 (493)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 160 (493)
+..++.. ...+++ ++|.+++....+. .++...+..++..+.+.++++++.++++.+.... .+++.
T Consensus 81 ~~~l~~l-~~~~~~-----------~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 146 (280)
T PF13429_consen 81 YERLIQL-LQDGDP-----------EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSA 146 (280)
T ss_dssp ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-H
T ss_pred ccccccc-cccccc-----------ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCH
Confidence 6666665 566666 3444444443332 2345556666677777777777777777766432 23344
Q ss_pred HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043480 161 KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYY 240 (493)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 240 (493)
..+..+...+.+.|+.++|.+.+++.++.. |.+..+.+.++..+...|+.+++.++++...+.. +.|+..+..+..++
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAY 224 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHh
Confidence 555555555666666666666666665543 2234455555555555555555555555544432 33344445555555
Q ss_pred HccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 043480 241 CDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKK 291 (493)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 291 (493)
...|+.++|...++...+.. +.|+.....+..++...|+.++|..+..+.
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 55555555555555555432 334555555555555555555555554443
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.3e-12 Score=111.65 Aligned_cols=364 Identities=10% Similarity=0.006 Sum_probs=263.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCC
Q 043480 41 RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKG 120 (493)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g 120 (493)
..|...+...+.++.+.|....|+..|......- +-.-.+|..|...+ .+. +....+...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~---------------e~~~~l~~~- 220 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDI---------------EILSILVVG- 220 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chH---------------HHHHHHHhc-
Confidence 4555555556667778888888888888876542 33334444443332 222 222223222
Q ss_pred CCCC-HhhHH-HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCC--CCChh
Q 043480 121 REPD-VVTYT-IVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKV--EFGVL 196 (493)
Q Consensus 121 ~~~~-~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~ 196 (493)
.+.| ...-. -+..++....+.+++++-++.....|++-+...-+....+.....+++.|+.+|+++.+..+ --|..
T Consensus 221 l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmd 300 (559)
T KOG1155|consen 221 LPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMD 300 (559)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHH
Confidence 2222 11111 13356666678889999999999988876766667777777888999999999999998742 13567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 043480 197 IYNALISGFCRTGRIRRAMAIKSF-MKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGL 275 (493)
Q Consensus 197 ~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (493)
+|+.++. .++.+..- ..+-+ ....+ +-.+.|...+.+.|.-.++.++|...|++..+.+ +.....|+.+.+-|
T Consensus 301 lySN~LY--v~~~~skL--s~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEy 374 (559)
T KOG1155|consen 301 LYSNVLY--VKNDKSKL--SYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEY 374 (559)
T ss_pred HHhHHHH--HHhhhHHH--HHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHH
Confidence 7777764 33333222 11111 11111 4456678888899999999999999999999875 44567889999999
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHH
Q 043480 276 CNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAE 355 (493)
Q Consensus 276 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 355 (493)
....+...|...++.+++..+. |-..|..+.++|.-.+.+.-|+-.|++..... +.|...|.+|..+|.+.++.++|+
T Consensus 375 vEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAi 452 (559)
T KOG1155|consen 375 VEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAI 452 (559)
T ss_pred HHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999998765 88999999999999999999999999998863 458899999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhC----C-CCC-CHhhHHHHHHHHHhcCChhHHHHHHH
Q 043480 356 KLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQ----G-ITP-DVISYNALINGLCKSSRVSEAMHLYE 429 (493)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (493)
+.|......+ ..+...+..+...|-+.++..+|...|.+.++. | ..| ......-|..-+.+.+++++|.....
T Consensus 453 KCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 453 KCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 9999999877 567789999999999999999999999887752 2 222 12222334555667788887776655
Q ss_pred HHHH
Q 043480 430 EMQI 433 (493)
Q Consensus 430 ~~~~ 433 (493)
....
T Consensus 532 ~~~~ 535 (559)
T KOG1155|consen 532 LVLK 535 (559)
T ss_pred HHhc
Confidence 5443
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=1.5e-13 Score=125.56 Aligned_cols=294 Identities=9% Similarity=-0.011 Sum_probs=153.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 043480 137 KAKEFDKAVQAWEHMIENGIKPDN-KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAM 215 (493)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 215 (493)
..|+++.|.+.+.+..+. .|+. ..+.....+....|+.+.|.+.+....+....+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 457777777777666554 2332 2233344555666777777777766655421222223333456666677777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHH-HHHHHHHccCCHHHHHHHHHHHHHc
Q 043480 216 AIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYN-QLLKGLCNSNQLDKAYMFMVKKMEA 294 (493)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 294 (493)
..++.+.+.. |.++.....+...+...|+++++.+.+..+.+.+.. +...+. ....++
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~------------------- 232 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE------------------- 232 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH-------------------
Confidence 7777766664 445556666666677777777777777776665432 222121 111110
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 043480 295 KGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGI---ELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRI 371 (493)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 371 (493)
......+..++..+.+..+.+..+ +.+...+..+...+...|+.++|.+.+++..+.. +.+..
T Consensus 233 -------------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~ 298 (409)
T TIGR00540 233 -------------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRA 298 (409)
T ss_pred -------------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCccc
Confidence 000111111111222222222211 1244555555556666666666666666655542 11111
Q ss_pred h--HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043480 372 L--YTTIIDCLCKSREIGTAYGVFLDMVEQGITPDV--ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLI 447 (493)
Q Consensus 372 ~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 447 (493)
. ...........++.+.+.+.+++..+. .+-|+ ....++...+.+.|++++|.+.|+........|+...+..+.
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 0 011111112335556666666666654 12233 445566677777777777777777433322456666666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 043480 448 GGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~ 468 (493)
..+.+.|+.++|.++|++.+.
T Consensus 378 ~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777776644
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=1.9e-16 Score=137.34 Aligned_cols=261 Identities=18% Similarity=0.111 Sum_probs=85.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 043480 130 IVIDGLCKAKEFDKAVQAWEHMIENGIKP-DNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRT 208 (493)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 208 (493)
.+...+.+.|++++|++++++......+| +...+..+...+...++++.|...++.+...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45667777888888888886554432123 33444445555666777777777777777654 2245556666665 567
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHccCCHHHHHHH
Q 043480 209 GRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCG-IEPDVYSYNQLLKGLCNSNQLDKAYMF 287 (493)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 287 (493)
+++++|.++++..-+. .+++..+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777665443 3455556666666777777777777777765422 234556666666777777777777777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 043480 288 MVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLS 367 (493)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 367 (493)
+++.+...+. +......++..+...|+.+++.+++....+.. +.++..+..+..++...|+.++|..+|+...+.. +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 7777766543 55556666666666677776666666665542 3355556666666777777777777777666544 4
Q ss_pred CCHHhHHHHHHHHHccCCHhHHHHHHHHHH
Q 043480 368 PDRILYTTIIDCLCKSREIGTAYGVFLDMV 397 (493)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 397 (493)
.|+.....+..++...|+.++|.++..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 566666666777777777777776666554
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=3.8e-13 Score=122.11 Aligned_cols=252 Identities=10% Similarity=0.011 Sum_probs=153.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH
Q 043480 206 CRTGRIRRAMAIKSFMKWNGCEPDLVTYN--AILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDK 283 (493)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 283 (493)
.+.|+++.|...+.++.+. .|+..... .....+...|+++.|...++.+.+.. |.++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4555555555555555543 33332221 22344455555555555555555443 3344455555555555556665
Q ss_pred HHHHHHHHHHcCCCCCh-------hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHH
Q 043480 284 AYMFMVKKMEAKGLRDK-------VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEK 356 (493)
Q Consensus 284 a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 356 (493)
|..++..+.+....++. ..|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555554333111 11222222233334455555666665443 23466777778888888888888888
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 043480 357 LLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGA 436 (493)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 436 (493)
++++..+. +++.... ++.+....++.+++.+..+...+.. +-|...+..+...|.+.|++++|.+.|+...+.
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-- 357 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-- 357 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 88877763 4554322 2333345578888888888887662 445566777888888888888888888888773
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 437 HPDEVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 437 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
.|+...+..+..++.+.|+.++|...+++.+.
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67888888888888888888888888887764
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=3.2e-13 Score=122.57 Aligned_cols=284 Identities=12% Similarity=0.045 Sum_probs=213.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHH--HHHHHHHhcCCHHHHH
Q 043480 138 AKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYN--ALISGFCRTGRIRRAM 215 (493)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 215 (493)
.|+++.|.+......+..-.| ...+..........|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 699999998887766542111 222333344557889999999999998875 34443222 3467888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChh-------hHHHHHHHHHccCCHHHHHHHH
Q 043480 216 AIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVY-------SYNQLLKGLCNSNQLDKAYMFM 288 (493)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~ 288 (493)
..++++.+.. +-++.....+...|.+.|+++++..++..+.+.+..++.. .|..++.......+.+...+.+
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998876 6677888888999999999999999999999876543221 2233333333444555555666
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 043480 289 VKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSP 368 (493)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 368 (493)
....... ..++.....+...+...|+.++|.+++++..+. +|+... .++.+....++.+++.+..+...+.. +.
T Consensus 253 ~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 253 KNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 5554432 247778888999999999999999999999875 445422 23334445699999999999988765 67
Q ss_pred CHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 369 DRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
|...+..+...+...+++++|.+.|+...+. .|+...+..+..++.+.|+.++|.+++++...
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7778889999999999999999999999985 78999989999999999999999999998754
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=4.3e-13 Score=109.31 Aligned_cols=287 Identities=17% Similarity=0.165 Sum_probs=211.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHhcCCH
Q 043480 138 AKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGV------LIYNALISGFCRTGRI 211 (493)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 211 (493)
.+++++|.++|-+|.+.. +.+..+...|.+.|.+.|..|.|+++++.+.+. ||. .+.-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 468899999999988753 235566778888888999999999999888874 332 2334566778888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHccCCHHHHHHH
Q 043480 212 RRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPD----VYSYNQLLKGLCNSNQLDKAYMF 287 (493)
Q Consensus 212 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~ 287 (493)
+.|..+|..+.+.+ ..-......++..|-...+|++|++.-+++.+.+-.+. ...|.-+...+....+.+.|...
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999888754 44455677888889999999999999988887654333 23456666677778889999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 043480 288 MVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLS 367 (493)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 367 (493)
+.+..+..+. .+..--.+.+.....|+++.|.+.++.+.++++.--+.+...|..+|...|+.++....+..+.+..
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 9998887654 5555556777888899999999999999988665556677888889999999999999998888754
Q ss_pred CCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---CChhHHHHHHHHHHHc
Q 043480 368 PDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKS---SRVSEAMHLYEEMQIR 434 (493)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 434 (493)
+....-..+...-....-.+.|...+.+-+.. .|+...+..++...... |...+....++.|...
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33333344444444444556676666666654 68888888888876543 4456666677777543
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.69 E-value=3.6e-13 Score=123.01 Aligned_cols=287 Identities=10% Similarity=-0.007 Sum_probs=157.3
Q ss_pred hcCChhHHHHHHHHhccCCCCcChh-hHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCH--hhHHHHH
Q 043480 56 RHSRFDLVQFYYQQMHPLGFSLTPF-TYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDV--VTYTIVI 132 (493)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l~ 132 (493)
..|+++.|.+.+.+..+. .|++. .+.....+....|++ +.|.+.+.+..+. .|+. .......
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~-----------~~A~~~l~~a~~~--~p~~~l~~~~~~a 160 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDE-----------ARANQHLEEAAEL--AGNDNILVEIART 160 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHh--CCcCchHHHHHHH
Confidence 456666666666665543 23322 223334555556666 3444555554442 2222 2233345
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHH-HHHH---HHHhc
Q 043480 133 DGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYN-ALIS---GFCRT 208 (493)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~ 208 (493)
..+...|+++.|.+.++.+.+.. +-+...+..+...+...|+++.|.+.+..+.+.+.. +...+. .-.. .....
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 56666667777777776666653 224455666666666667777777666666665432 222221 1111 11222
Q ss_pred CCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhh---HHHHHHHHHccCCHH
Q 043480 209 GRIRRAMAIKSFMKWNG---CEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYS---YNQLLKGLCNSNQLD 282 (493)
Q Consensus 209 ~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~ 282 (493)
+..++..+.+..+.... .+.++..+..+...+...|+.++|.+.+++..+.. |+... .....-.....++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChH
Confidence 22222223333333321 11356666667777777777777777777776643 33221 111111223346667
Q ss_pred HHHHHHHHHHHcCCCCCh--hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043480 283 KAYMFMVKKMEAKGLRDK--VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQ 360 (493)
Q Consensus 283 ~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 360 (493)
.+.+.+++..+..+. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 317 ~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 317 KLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777766665443 44 455667777777788888888777433333356777777777777778888888777776
Q ss_pred HH
Q 043480 361 MR 362 (493)
Q Consensus 361 ~~ 362 (493)
..
T Consensus 396 ~l 397 (409)
T TIGR00540 396 SL 397 (409)
T ss_pred HH
Confidence 54
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=2.4e-12 Score=105.03 Aligned_cols=285 Identities=13% Similarity=0.084 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHhccCchhHHHHHH
Q 043480 107 KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD---NKACAALVVGLCGDGKVDLAYELT 183 (493)
Q Consensus 107 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 183 (493)
++|.+.|-+|.+. .+-+..+-.+|...|.+.|..|.|+++...+.++.--+. ..+...|..-|...|-+|.|+.+|
T Consensus 52 dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f 130 (389)
T COG2956 52 DKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIF 130 (389)
T ss_pred chHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 6788999999874 344556677788999999999999999999998621111 245567788899999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 043480 184 VGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDL----VTYNAILNYYCDEVMLDEAEKLVMEMESC 259 (493)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 259 (493)
..+.+.+ ..-......|+..|-...+|++|++.-+++.+.+-.+.. ..|..+...+....+++.|...+.+..+.
T Consensus 131 ~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa 209 (389)
T COG2956 131 NQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA 209 (389)
T ss_pred HHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 9999865 445667888999999999999999999999887644432 23455666666788999999999998875
Q ss_pred CCCCChhh-HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHH
Q 043480 260 GIEPDVYS-YNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTF 338 (493)
Q Consensus 260 ~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 338 (493)
+ |+..- --.+.+.....|++..|.+.++.+.+.++.--+.+...|..+|...|+.++....+..+.+... .....
T Consensus 210 ~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~ 285 (389)
T COG2956 210 D--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADAE 285 (389)
T ss_pred C--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHH
Confidence 4 33333 3345578889999999999999999987666667788899999999999999999999988643 44444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc---cCCHhHHHHHHHHHHhC
Q 043480 339 TILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK---SREIGTAYGVFLDMVEQ 399 (493)
Q Consensus 339 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 399 (493)
..+...-......+.|...+.+-... +|+...+..++..... .|...+...+++.|+..
T Consensus 286 l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 286 LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 44444444455566666655544433 7999999999988754 34566667777777643
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=4e-12 Score=106.99 Aligned_cols=284 Identities=14% Similarity=0.066 Sum_probs=150.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043480 138 AKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAI 217 (493)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 217 (493)
.|+|.+|+++..+-.+.+-. ....|..-..+.-..|+.+.+-..+.++.+....++..+.-.........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 47788887777776666533 23344444555666777777777777777654455666666667777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChh-------hHHHHHHHHHccCCHHHHHHHHHH
Q 043480 218 KSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVY-------SYNQLLKGLCNSNQLDKAYMFMVK 290 (493)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~ 290 (493)
.+++...+ +.++.......++|.+.|++.....++..+.+.+.-.++. +|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777665 5566667777777777777777777777777776544332 233333333333322222222222
Q ss_pred HHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 043480 291 KMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDR 370 (493)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 370 (493)
.... ...++..-..++.-+.+.|+.++|.++..+..+.+..|+ -...-.+.+.++.+.-++..+...+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 2221 112333344444444555555555555555444433333 111112233444444444443333221 2333
Q ss_pred HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043480 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEM 431 (493)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 431 (493)
..+.++...|.+.+.+.+|...|+..++. .|+..+|+.+.+++.+.|+..+|.++.++.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44445555555555555555555544432 344455555555555555555555554444
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.8e-13 Score=122.35 Aligned_cols=198 Identities=16% Similarity=0.073 Sum_probs=109.9
Q ss_pred HHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---H
Q 043480 160 NKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNA---I 236 (493)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l 236 (493)
..+|..+..+|.-+++.+.|++.|++.+..+ +....+|+.+.+-+.....+|.|...|+... ..|+..|++ +
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGl 495 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGL 495 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhh
Confidence 3444444444444444444444444444332 2244555555555555566666666666555 333333333 3
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH
Q 043480 237 LNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQT 316 (493)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 316 (493)
.-.|.+.++++.|+-.|+.+.+.+ +.+.+....+...+.+.|+.++|+.+++++....+. |+..--..+..+...+++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcch
Confidence 445666666666666666666543 334455555556666666666666666666655443 333333344455556666
Q ss_pred HHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 043480 317 RRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN 365 (493)
Q Consensus 317 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 365 (493)
++|+..++++++. ++-+...+..+...|.+.|+.+.|..-|..+.+..
T Consensus 574 ~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 574 VEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 7777777766665 33344556666666667777777766666666544
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=9e-12 Score=104.92 Aligned_cols=293 Identities=12% Similarity=0.033 Sum_probs=233.1
Q ss_pred ccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 043480 172 GDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEK 251 (493)
Q Consensus 172 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 251 (493)
..|+|..|++...+..+.+ +.....|..-..+.-+.|+.+.+-.++.+..+..-.++....-.........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4699999999999987776 334556777778888999999999999999876335555666667778889999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh-------hHHHHHHHHHHcCCHHHHHHHHH
Q 043480 252 LVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKV-------SYNTVIEAFCKGGQTRRAYKLFE 324 (493)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~ 324 (493)
-+.++.+.+ +.++.......++|.+.|++.....++.++.+.+...+.. +|..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999998865 5677888889999999999999999999999887765543 46666666666666666666777
Q ss_pred HHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC
Q 043480 325 GMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD 404 (493)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 404 (493)
..... .+.++..-..++.-+..+|+.++|.++..+..+.+..|+ ... .-.+.+.++.+.-.+..+.-.+. .+-+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~-h~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQ-HPED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHh-CCCC
Confidence 76654 455677778888889999999999999999988776665 222 22345677888877777776654 2445
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043480 405 VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLD 474 (493)
Q Consensus 405 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 474 (493)
+..+.+|...|.+.+.+.+|...|+...+ ..|+..+|..+.+++.+.|+..+|..+.++.+..-.+|+
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 57888999999999999999999998877 479999999999999999999999999998876544443
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=2.4e-13 Score=121.53 Aligned_cols=285 Identities=13% Similarity=0.051 Sum_probs=216.9
Q ss_pred CchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCChHHHHH
Q 043480 174 GKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNG--CEPDLVTYNAILNYYCDEVMLDEAEK 251 (493)
Q Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~ 251 (493)
-+..+|...|..+.... .-+..+...+..+|...+++++|.++|+.+.+.. ..-+..+|...+-.+-+ +-+..
T Consensus 333 y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 35678888888855442 3344666778889999999999999999988753 12355677777655422 12222
Q ss_pred HHH-HHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043480 252 LVM-EMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRG 330 (493)
Q Consensus 252 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 330 (493)
.+. .+.+. .+..+.+|.++.++|.-.++.+.|++.|+++++..+. ...+|+.+..-+.....+|.|...|+......
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 232 23332 2567889999999999999999999999999887543 67788888888888899999999999887652
Q ss_pred CCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHH
Q 043480 331 IELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNA 410 (493)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 410 (493)
.+ +-..|--+...|.+.++++.|+-.|+.+.+.+ +.+.+....+...+-+.|+.++|+++++++.....+ |+..--.
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 21 33344556778899999999999999999877 677788888888899999999999999999876433 4444444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043480 411 LINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQEKKLELACRLWDQMMEKG 470 (493)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 470 (493)
-+..+...+++++|+..++++.+. .| +..+|..+...|.+.|+.+.|+.-|..|.+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 566677789999999999999884 45 57788888999999999999999999888653
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.63 E-value=5.6e-10 Score=99.87 Aligned_cols=448 Identities=12% Similarity=0.117 Sum_probs=269.0
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSN-CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
|.+|...++...++|++..-+..|++++..- +.....+|...+......+-.+-++.+|++.++. ++..-...+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 5788889999999999999999999987652 1233457888888888888899999999999864 3444677788
Q ss_pred HHhccCChhhHHHHHHHHH----------HHHHHHHHHH-------------------HhCC--CCCCH--hhHHHHHHH
Q 043480 88 GLCEVKNFTLINILLDNMD----------KLALEVFHKM-------------------VSKG--REPDV--VTYTIVIDG 134 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~----------~~a~~~~~~~-------------------~~~g--~~~~~--~~~~~l~~~ 134 (493)
.++..+++++|.+.+..++ +...++|.++ ...| .-+|. ..|++|.+.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 8889999999998888776 1122222221 1111 12232 368899999
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcc----------------C------chhHHHHHHHHHHhCC--
Q 043480 135 LCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGD----------------G------KVDLAYELTVGAMKGK-- 190 (493)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~~~~-- 190 (493)
|.+.|.+++|.++|++.... ..+..-|..+...|..- + +++-....|+.+....
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 99999999999999988764 22344444444444321 1 1222333344444322
Q ss_pred ---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCChHHHHHHHHH
Q 043480 191 ---------VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPD------LVTYNAILNYYCDEVMLDEAEKLVME 255 (493)
Q Consensus 191 ---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~ 255 (493)
-+.++..|..-+. ...|+..+-...|.+..+.- .|. ...|..+.+.|-..|+++.|..+|++
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 0122333333222 22455666667777766531 221 23577788888889999999999988
Q ss_pred HHHCCCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-----------------ChhhHHHHHHHHHHcCC
Q 043480 256 MESCGIEPD---VYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR-----------------DKVSYNTVIEAFCKGGQ 315 (493)
Q Consensus 256 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~ 315 (493)
..+...+.- ..+|.....+-.+..+++.|+.++.++......+ +...|...++.--..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 876543322 3456666666677788888888877765432221 23346666666666778
Q ss_pred HHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHc---cCCHhHHHH
Q 043480 316 TRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDR-ILYTTIIDCLCK---SREIGTAYG 391 (493)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~a~~ 391 (493)
++....+|+.+....+. ++...-.....+-...-++++.+++++-...-..|+. ..|+..+.-+.+ ...++.|..
T Consensus 493 festk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 88888888888776443 3332222222334455567777777665554334443 356665555543 235778888
Q ss_pred HHHHHHhCCCCCCHhhHHHHH--HHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 392 VFLDMVEQGITPDVISYNALI--NGLCKSSRVSEAMHLYEEMQIRGAHPD--EVTFKLLIGGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 392 ~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 467 (493)
+|++.++ |.+|...-+--|+ ..--..|-...|+.++++.... +++. ...|+..|.-....=-+.....+++++.
T Consensus 572 LFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaI 649 (835)
T KOG2047|consen 572 LFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAI 649 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 8888887 4554432211111 1112346666677777775442 3321 3445555543333322334444555555
Q ss_pred H
Q 043480 468 E 468 (493)
Q Consensus 468 ~ 468 (493)
+
T Consensus 650 e 650 (835)
T KOG2047|consen 650 E 650 (835)
T ss_pred H
Confidence 4
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=7.7e-12 Score=103.48 Aligned_cols=446 Identities=9% Similarity=0.015 Sum_probs=201.4
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCCh
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNF 95 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 95 (493)
+.-+....++.+|+.+++--...+-+-...+-.-+..++...|++++|...|.-+.... .++...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44566778999999999877654422222333334566778999999999999887754 67777777888888888888
Q ss_pred hhHHHHHHHHHHH---HHHHHHHHHhCCC-----------CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 043480 96 TLINILLDNMDKL---ALEVFHKMVSKGR-----------EPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNK 161 (493)
Q Consensus 96 ~~a~~~~~~~~~~---a~~~~~~~~~~g~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (493)
.+|..+.++.++. -.-+|.-..+.+. .....--.+|.......-.+++|+++|.+.... .|+-.
T Consensus 108 ~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~ 185 (557)
T KOG3785|consen 108 IEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYI 185 (557)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhhh
Confidence 7776665544310 0001111111110 001111222333333333466666666666654 23333
Q ss_pred hHHH-HHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-H
Q 043480 162 ACAA-LVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILN-Y 239 (493)
Q Consensus 162 ~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-~ 239 (493)
..+. +.-+|.+..-++.+.+++...+..- +.+...-|.......+.=+-..|..-...+...+-..-+ .-.-+++ -
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-f~~~l~rHN 263 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-FIEYLCRHN 263 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-hHHHHHHcC
Confidence 3332 2334455555566665555544431 222333332222222211111122212222211100000 0000000 0
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC-----
Q 043480 240 YCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGG----- 314 (493)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 314 (493)
+.--..-+.|.+++-.+.+. -+..-..++-.|.+.+++.+|..+.++.... ++.-|-.-.-.++..|
T Consensus 264 LVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 264 LVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGVVFAALGQETGS 335 (557)
T ss_pred eEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHHHHHHhhhhcCc
Confidence 00011122333333222221 1122223333455666666665554433211 2222211111122222
Q ss_pred --CHHHHHHHHHHHHHcCCCcCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHH
Q 043480 315 --QTRRAYKLFEGMRRRGIELDVV-TFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYG 391 (493)
Q Consensus 315 --~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 391 (493)
...-|.+.|+..-..+..-|.. .-.++..++.-..++++.+..+..+...-...|...+ .+.++++..|.+.+|++
T Consensus 336 reHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEe 414 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEE 414 (557)
T ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHH
Confidence 2233444444333333222211 1233344444445566666666666554333333333 35556666666666666
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043480 392 VFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD-EVTFKLLIGGLVQEKKLELACRLWDQMMEKG 470 (493)
Q Consensus 392 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 470 (493)
+|-++..-.++.+..-...|.++|.+.+.++.|+.++-++.. ..+ ......+..-|.+.+.+=-|.+.|+.+...
T Consensus 415 lf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l- 490 (557)
T KOG3785|consen 415 LFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL- 490 (557)
T ss_pred HHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc-
Confidence 666555433332222233445566666666666665544432 112 222333445566666666666666655532
Q ss_pred CCCCHHHHHH
Q 043480 471 FTLDKTVSAA 480 (493)
Q Consensus 471 ~~~~~~~~~~ 480 (493)
.|++.-|..
T Consensus 491 -DP~pEnWeG 499 (557)
T KOG3785|consen 491 -DPTPENWEG 499 (557)
T ss_pred -CCCccccCC
Confidence 455554443
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=3.7e-11 Score=103.73 Aligned_cols=386 Identities=13% Similarity=0.079 Sum_probs=248.8
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
-|..|..|.....+|..-|++++..+--...++.+ |.-+..+..-.+++-..|++.+|+.=. +..+
T Consensus 145 ~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~lg~~~eal~D~-------------tv~c 210 (606)
T KOG0547|consen 145 CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQLGKFDEALFDV-------------TVLC 210 (606)
T ss_pred CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHhhccHHHHHHhh-------------hHHH
Confidence 34448999999999999999999999999999876 333455666667777778877765321 2333
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCC---CCHhhHHHHHHHHhcc--------CC-----HHHHHHHH
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGRE---PDVVTYTIVIDGLCKA--------KE-----FDKAVQAW 148 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~l~~~~~~~--------~~-----~~~a~~~~ 148 (493)
++..+....-...+.+++. +.|.....+-.+.+.+ |+.....+....+... ++ +.++++.+
T Consensus 211 i~~~F~n~s~~~~~eR~Lk---k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l 287 (606)
T KOG0547|consen 211 ILEGFQNASIEPMAERVLK---KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEAL 287 (606)
T ss_pred HhhhcccchhHHHHHHHHH---HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHH
Confidence 3333333222222222222 3444444444442223 3333333333322211 00 11111111
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCC---CCC---C------hhhHHHHHHHHHhcCCHHHHHH
Q 043480 149 EHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGK---VEF---G------VLIYNALISGFCRTGRIRRAMA 216 (493)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~---~------~~~~~~l~~~~~~~~~~~~a~~ 216 (493)
..-.. ..+..|.+.+.+-.... ... | ..+.......+.-.|+.-.|..
T Consensus 288 ~~~~~--------------------e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 288 EKGLE--------------------EGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred HhhCc--------------------hhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 11111 12222322222221100 000 1 1111222223445688888999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 043480 217 IKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKG 296 (493)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 296 (493)
-|+..+.....+ ...|-.+...|....+.++....|....+.+ +.++.+|..-.+++.-.++++.|..-|++.+...+
T Consensus 348 d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 348 DFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP 425 (606)
T ss_pred hHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 999988775222 2236667778899999999999999998865 56788898888888889999999999999988654
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----CCHH
Q 043480 297 LRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLS-----PDRI 371 (493)
Q Consensus 297 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~ 371 (493)
. +...|-.+..+..+.+.+++++..|++.++. ++.-+..|+.....+...++++.|.+.|+..++.... .+..
T Consensus 426 e-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~ 503 (606)
T KOG0547|consen 426 E-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA 503 (606)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccch
Confidence 3 6666777777777889999999999999987 5557788999999999999999999999988864311 1222
Q ss_pred hH--HHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 372 LY--TTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 372 ~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
.+ -.++. +.-.+++..|..++++.++.. +-....|..|...-.+.|+.++|+++|++...
T Consensus 504 plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 504 PLVHKALLV-LQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhhhhHhh-hchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 22222 223489999999999999864 22456789999999999999999999998754
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=9.4e-11 Score=103.20 Aligned_cols=435 Identities=10% Similarity=-0.001 Sum_probs=295.4
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHh----ccCC--------
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQM----HPLG-------- 74 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~-------- 74 (493)
.||..-.-+++++.-.|+++.|..+...-.- ...|.........++.+..++++|..++... ..-.
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l--e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~ 124 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTYKL--EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAAN 124 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhc
Confidence 4455555688999999999999888875432 2456777777788899999999999998832 1100
Q ss_pred -CCcChhh----HHHH-------HHHHhccCChhhHHHHHHHHH---HHHHHHHHHHHhCCCCCCHhhHHHHHHH-Hh-c
Q 043480 75 -FSLTPFT----YSRF-------ISGLCEVKNFTLINILLDNMD---KLALEVFHKMVSKGREPDVVTYTIVIDG-LC-K 137 (493)
Q Consensus 75 -~~~~~~~----~~~l-------l~~~~~~~~~~~a~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~-~~-~ 137 (493)
+.+|..- -+.- ...|....+++.|...+.+.. -...+.|+.+++...-.....|..+... +. .
T Consensus 125 ~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~ 204 (611)
T KOG1173|consen 125 TLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAML 204 (611)
T ss_pred eeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhh
Confidence 0111110 0001 112333445555555555444 2233334444333211111223222210 00 1
Q ss_pred cCCHHHHH-HHHHHH----HH------------CCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHH
Q 043480 138 AKEFDKAV-QAWEHM----IE------------NGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNA 200 (493)
Q Consensus 138 ~~~~~~a~-~~~~~~----~~------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (493)
.+...+-+ .+|+-- .. .+..-+.........-+...+++.+..++++.+.+.. ++...++..
T Consensus 205 ~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~ 283 (611)
T KOG1173|consen 205 TKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPL 283 (611)
T ss_pred hhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHH
Confidence 11111112 222211 00 0122334445555666778899999999999999876 677778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 043480 201 LISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQ 280 (493)
Q Consensus 201 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 280 (493)
-|.++...|+..+-..+-.++.+.- |..+.+|-++.-.|...|...+|.+.|......+ +.-...|-...+.|.-.|.
T Consensus 284 ~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~E 361 (611)
T KOG1173|consen 284 HIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGE 361 (611)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcch
Confidence 8889999999888888888887763 6678899999999999999999999999887543 1224578888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043480 281 LDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQ 360 (493)
Q Consensus 281 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 360 (493)
.++|+..+..+-+.-+... ..+--+.--|.+.++.+.|.+.|.+.... .+.|+...+.+.-.....+.+.+|..+|+.
T Consensus 362 hdQAmaaY~tAarl~~G~h-lP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~ 439 (611)
T KOG1173|consen 362 HDQAMAAYFTAARLMPGCH-LPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQK 439 (611)
T ss_pred HHHHHHHHHHHHHhccCCc-chHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHH
Confidence 9999999988776432211 11222344577789999999999998876 345788888888877888999999999987
Q ss_pred HHhC----C--CCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 361 MRGM----N--LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 361 ~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
.... + ...-..+++.|.++|.+.+.+++|+..+++.+.. .+-+..++.++.-.|...|+++.|...|.+..-
T Consensus 440 ~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~- 517 (611)
T KOG1173|consen 440 ALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA- 517 (611)
T ss_pred HHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh-
Confidence 7621 1 1123457899999999999999999999999986 356888999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHH
Q 043480 435 GAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 435 ~~~p~~~~~~~l~~~~~ 451 (493)
+.|+..+...++..+.
T Consensus 518 -l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 518 -LKPDNIFISELLKLAI 533 (611)
T ss_pred -cCCccHHHHHHHHHHH
Confidence 5787766666665444
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.57 E-value=2.2e-11 Score=112.46 Aligned_cols=218 Identities=14% Similarity=0.156 Sum_probs=123.9
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
...|+..+|..+|.-|+..|+++.|- +|..|.-++.+.+...++.++....+.++.+.+. .|.+.+|.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 45688899999999999999999999 8888877666666666666666555555554443 35555666
Q ss_pred HHHHHHhccCChhhHH---HHHHHHH------------------------------------------HHHHHHHHHHHh
Q 043480 84 RFISGLCEVKNFTLIN---ILLDNMD------------------------------------------KLALEVFHKMVS 118 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~---~~~~~~~------------------------------------------~~a~~~~~~~~~ 118 (493)
.|+.+|...||..... +.++... +.+++++..+..
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 6666666666543211 1111111 111111111100
Q ss_pred CCCCCCHhhHHHHHHHHhccC-CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhh
Q 043480 119 KGREPDVVTYTIVIDGLCKAK-EFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLI 197 (493)
Q Consensus 119 ~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 197 (493)
... +. .+..+++-+.... .+++-..+.....+ .|+..++..++.+-...|+.+.|..++.+|.+.|++.+..-
T Consensus 168 sa~--~~-p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 168 SAW--NA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred ccc--cc-hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 000 00 0000122222211 22222233333322 46777777777777777777777777777777777766666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 043480 198 YNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCD 242 (493)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 242 (493)
|-.|+-+ .++..-+..+++-|...|+.|+..|+....-.+.+
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 6665544 66666666777777777777777776555444444
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.55 E-value=2.4e-09 Score=98.33 Aligned_cols=301 Identities=14% Similarity=0.067 Sum_probs=177.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHh
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (493)
+..-.+..+...|++++|++.++..... +.............+.+.|++++|..+|..+++.+ +.|..-|..+..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHh
Confidence 3334567788999999999999886654 34445666778899999999999999999999986 344444455555542
Q ss_pred ccCChhh-HHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHH-HHHHHHHHHHCCCCCCHHhHHHHHH
Q 043480 91 EVKNFTL-INILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDK-AVQAWEHMIENGIKPDNKACAALVV 168 (493)
Q Consensus 91 ~~~~~~~-a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~ 168 (493)
....... .. +...++++++... -|.......+.-.+.....|.. +...+..+...|+++ ++..+-.
T Consensus 84 ~~~~~~~~~~-------~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~ 151 (517)
T PF12569_consen 84 LQLQLSDEDV-------EKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKP 151 (517)
T ss_pred hhcccccccH-------HHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHH
Confidence 2221110 01 3445556655543 2322222222222222223332 334445556666542 3444555
Q ss_pred HHhccCchhHHHHHHHHHHhC--------------CCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH
Q 043480 169 GLCGDGKVDLAYELTVGAMKG--------------KVEFGVL--IYNALISGFCRTGRIRRAMAIKSFMKWNGCEPD-LV 231 (493)
Q Consensus 169 ~~~~~~~~~~a~~~~~~~~~~--------------~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~ 231 (493)
.|....+.+...+++...... .-+|+.. ++.-+...|...|++++|++++++.+.+ .|+ +.
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~e 229 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVE 229 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHH
Confidence 555444444444444443321 1133432 3345566677777777777777777766 343 55
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--Chh----h--H
Q 043480 232 TYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR--DKV----S--Y 303 (493)
Q Consensus 232 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~----~--~ 303 (493)
.|..-.+.+-+.|++.+|...++.....+ ..|...-+-.+..+.+.|+.++|.+.+......+..+ |.. . .
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 66666777777777777777777777654 2455555666677777777777777776665544222 111 1 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 043480 304 NTVIEAFCKGGQTRRAYKLFEGMRR 328 (493)
Q Consensus 304 ~~l~~~~~~~~~~~~a~~~~~~~~~ 328 (493)
.....+|.+.|++..|++.|..+.+
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3345677777777777766666554
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=3e-09 Score=88.50 Aligned_cols=391 Identities=14% Similarity=0.165 Sum_probs=208.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCC
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKN 94 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 94 (493)
++.++.+.|++++|+..++.+.+.+ .++...+-.+.-.+.-.|.+.+|..+-.+..+ ++-.-..++....+.++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCc
Confidence 6778899999999999999988876 56677777777777788999999999887643 33333444444455555
Q ss_pred hhhHHHHHHHHH-------------------HHHHHHHHHHHhCCCCCCHhhHHHHH-HHHhccCCHHHHHHHHHHHHHC
Q 043480 95 FTLINILLDNMD-------------------KLALEVFHKMVSKGREPDVVTYTIVI-DGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 95 ~~~a~~~~~~~~-------------------~~a~~~~~~~~~~g~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
-++-...++... ++|++++.+... ..|+-...|..+ -+|.+..-++-+.++++-..+.
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~--dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ--DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 444444433332 789999999987 355666666555 4667778888888888887765
Q ss_pred CCCCCHH-hHHHHHHHHhc--cCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCC
Q 043480 155 GIKPDNK-ACAALVVGLCG--DGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRT-----GRIRRAMAIKSFMKWNGC 226 (493)
Q Consensus 155 ~~~~~~~-~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~ 226 (493)
-||+. +.+.......+ .|+. |..-..++.+.+.. . |- .+.-.++. ++-+.|++++-.+.+.
T Consensus 215 --~pdStiA~NLkacn~fRl~ngr~--ae~E~k~ladN~~~-~---~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~-- 283 (557)
T KOG3785|consen 215 --FPDSTIAKNLKACNLFRLINGRT--AEDEKKELADNIDQ-E---YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH-- 283 (557)
T ss_pred --CCCcHHHHHHHHHHHhhhhccch--hHHHHHHHHhcccc-c---ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--
Confidence 34543 33332222222 2332 22222233222110 0 11 11111221 2335566655544432
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC-------CHHHHHHHHHHHHHcCCCC-
Q 043480 227 EPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSN-------QLDKAYMFMVKKMEAKGLR- 298 (493)
Q Consensus 227 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~- 298 (493)
-| ..-..++-.|.+.+++.+|..+.+++.- ..|-......+. +...| ...-|...|.-.-.+...-
T Consensus 284 IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD 357 (557)
T KOG3785|consen 284 IP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECD 357 (557)
T ss_pred Ch--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccc
Confidence 12 2223344456667777777666655431 112222222221 11222 2233333333222222111
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 043480 299 DKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIID 378 (493)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 378 (493)
++..-.++...+.-..++++++-.+..+...-.. |...--.+.++++..|++.+|+++|-.+....++.+..-...+.+
T Consensus 358 TIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LAr 436 (557)
T KOG3785|consen 358 TIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLAR 436 (557)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHH
Confidence 1222344455555555666666666666554332 222233455666667777777777766655443333333345556
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 379 CLCKSREIGTAYGVFLDMVEQGITPDVI-SYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
+|.+++.++.|.+++-.+-. +.+.. ....+..-|.+.+.+=-|-+.|+.+...
T Consensus 437 Cyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 66677777666655533321 11222 2223344566666666666666666554
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.54 E-value=4.8e-10 Score=102.48 Aligned_cols=439 Identities=10% Similarity=-0.019 Sum_probs=272.4
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcC-hhh
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLT-PFT 81 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~ 81 (493)
.++..|+.+|..|.-+...+|+++.+.+.|++....- -.....|+.+...+...|.-..|+.+++........|+ +..
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 4566899999999999999999999999999987653 34456788899999999999999999998776543343 333
Q ss_pred HHHHHHHHh-ccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc-----------CCHHHHHHHHH
Q 043480 82 YSRFISGLC-EVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKA-----------KEFDKAVQAWE 149 (493)
Q Consensus 82 ~~~ll~~~~-~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~ 149 (493)
+...-..|. +.+..+++. +-|.++.+......-......|..+.-+|... ....++++.++
T Consensus 396 ~Lmasklc~e~l~~~eegl-------dYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGL-------DYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred HHHHHHHHHhchhhhhhHH-------HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 333333333 345554444 22333333221111122344555555555432 22457788888
Q ss_pred HHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043480 150 HMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPD 229 (493)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 229 (493)
+.++.+. .|..+...+..-|+..++++.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+.....- ..|
T Consensus 469 ~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N 546 (799)
T KOG4162|consen 469 EAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDN 546 (799)
T ss_pred HHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhh
Confidence 8887653 25555666666677888899999988888887556788888888888888899999998888766431 111
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCChhhHHHHH
Q 043480 230 LVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEA--KGLRDKVSYNTVI 307 (493)
Q Consensus 230 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~ 307 (493)
..-...-+..-...++.+++......+... -.+...... .++-.........+.-. .+...+.++..+.
T Consensus 547 ~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q~-------~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 547 HVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQQ-------TLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred hhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHhh-------hhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 111111122222356666666655554421 000000000 01111111111111100 1111112222222
Q ss_pred HHHHHc---CCHHHHHHHHHHHHHcCCCc--C------HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 043480 308 EAFCKG---GQTRRAYKLFEGMRRRGIEL--D------VVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTI 376 (493)
Q Consensus 308 ~~~~~~---~~~~~a~~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 376 (493)
.-.... -..+.. +.+....| + ...|......+.+.++.++|...+.+..+.. +.....|...
T Consensus 618 ~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~ 690 (799)
T KOG4162|consen 618 SLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLR 690 (799)
T ss_pred HHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHh
Confidence 111111 011111 22111112 2 1234455667778889999998888887654 5666777777
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043480 377 IDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMH--LYEEMQIRGAHPDEVTFKLLIGGLVQEK 454 (493)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g 454 (493)
...+...|.+.+|.+.|....... +-++....++..++...|+..-|.. ++..+.+.+.. +...|..+...+.+.|
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLG 768 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcc
Confidence 778888899999999999888752 2245678889999999998888887 99999886543 8999999999999999
Q ss_pred CHHHHHHHHHHHHHc
Q 043480 455 KLELACRLWDQMMEK 469 (493)
Q Consensus 455 ~~~~a~~~~~~~~~~ 469 (493)
+.+.|...|..+.+.
T Consensus 769 d~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 769 DSKQAAECFQAALQL 783 (799)
T ss_pred chHHHHHHHHHHHhh
Confidence 999999999988875
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.53 E-value=6.5e-10 Score=99.62 Aligned_cols=438 Identities=12% Similarity=0.086 Sum_probs=225.9
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
++|..+.+.....-.+...|+-++|..........+ ..+.+.|..+.-.+....+|++|++.|..++..+ +.|...+.
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilr 113 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILR 113 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 344444444433344444455555555555544443 4444555555555555555666666666555543 33344444
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCHHh
Q 043480 84 RFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG-IKPDNKA 162 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~ 162 (493)
-+.-.-++.+++ +........+.+. .+.....|..++.++.-.|+...|..+.+...+.. -.|+...
T Consensus 114 DlslLQ~QmRd~-----------~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~ 181 (700)
T KOG1156|consen 114 DLSLLQIQMRDY-----------EGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKED 181 (700)
T ss_pred HHHHHHHHHHhh-----------hhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH
Confidence 333333344444 2233333344442 23345567777777777888888888888777653 2355544
Q ss_pred HHHHH------HHHhccCchhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043480 163 CAALV------VGLCGDGKVDLAYELTVGAMKGKVEFGV-LIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNA 235 (493)
Q Consensus 163 ~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 235 (493)
+.... ......|..+.|.+.+...... ..|- ..-..-...+.+.++.++|..++..+... .||..-|..
T Consensus 182 ~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~ 257 (700)
T KOG1156|consen 182 YEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYE 257 (700)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHH
Confidence 43322 3334567777777665544322 1122 22233455677788888888888888876 455554444
Q ss_pred H-HHHHH-ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHH
Q 043480 236 I-LNYYC-DEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQL-DKAYMFMVKKMEAKGLRDKVSYNTVIEAFCK 312 (493)
Q Consensus 236 l-l~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (493)
. ..++. -.+..+....+|....+. .|.......+--......++ +..-.++...++.|.+ .++..+...|-.
T Consensus 258 ~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~ 332 (700)
T KOG1156|consen 258 GLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKD 332 (700)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhc
Confidence 3 33433 223333333555554432 12111111111111111222 2223334444444332 222333332222
Q ss_pred cCCHHHHHHHHHHHH----HcC----------CCcCHh--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HhHHH
Q 043480 313 GGQTRRAYKLFEGMR----RRG----------IELDVV--TFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDR-ILYTT 375 (493)
Q Consensus 313 ~~~~~~a~~~~~~~~----~~~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 375 (493)
-...+-..++...+. ..| -+|... ++-.++..+-+.|+++.|..+++....+ .|+. ..|..
T Consensus 333 p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~ 410 (700)
T KOG1156|consen 333 PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLV 410 (700)
T ss_pred hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHH
Confidence 111111111111111 111 134433 3445667778889999999999888865 4543 45666
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--C----HHHHHHH--H
Q 043480 376 IIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP--D----EVTFKLL--I 447 (493)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~----~~~~~~l--~ 447 (493)
=.+.+...|++++|...+.+..+.. .||...-..-..-..++++.++|.++....-+.|... | .-.|..+ .
T Consensus 411 KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g 489 (700)
T KOG1156|consen 411 KARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDG 489 (700)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhh
Confidence 6677888899999999998888763 4454443355556677888889988888886665311 1 1122222 3
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 043480 448 GGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~ 467 (493)
.+|.+.|++-.|++-+....
T Consensus 490 ~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 490 EAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 56777777666655544443
No 62
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2.1e-09 Score=95.44 Aligned_cols=445 Identities=13% Similarity=0.085 Sum_probs=245.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
.-+-++.+...|++++|.+...+++..+ |.+...+..=+-++++.++|++|+.+.+.-.... ..+.+.| .-.-+..+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~f-EKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFF-EKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhH-HHHHHHHH
Confidence 3345778899999999999999999987 7778888888889999999999997665533211 1111111 11233446
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH--HhHHHHHHH
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN--KACAALVVG 169 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~ 169 (493)
.+.. +.|+..++-. .+.+..+...-...+.+.|++++|+.+|..+.+.+.. +. ..-..++..
T Consensus 92 lnk~-----------Dealk~~~~~----~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 92 LNKL-----------DEALKTLKGL----DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAV 155 (652)
T ss_pred cccH-----------HHHHHHHhcc----cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHH
Confidence 6777 5555555522 2223447777788899999999999999999887532 22 112222211
Q ss_pred HhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCHH-HHHH
Q 043480 170 LCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNG-------------CEPDLV-TYNA 235 (493)
Q Consensus 170 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~-~~~~ 235 (493)
-. .-.+. +.+...... ..+-..+-.....++..|++.+|+++++...+.+ +.-... .-..
T Consensus 156 ~a----~l~~~-~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQ 229 (652)
T KOG2376|consen 156 AA----ALQVQ-LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQ 229 (652)
T ss_pred HH----hhhHH-HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence 11 11111 122222111 1122222234456778899999999998883211 000111 1223
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCChhh----HHHHHHHHHccCCHH-HHHHHHHHHHHc-----------CCCCC
Q 043480 236 ILNYYCDEVMLDEAEKLVMEMESCGIEPDVYS----YNQLLKGLCNSNQLD-KAYMFMVKKMEA-----------KGLRD 299 (493)
Q Consensus 236 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~-~a~~~~~~~~~~-----------~~~~~ 299 (493)
+.-.+...|+-.+|..++....+... +|... -|.++.+-....-++ .++..++..... .....
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~ 308 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA 308 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44456678999999999999887653 33322 222222111111111 111111111110 00001
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHH-H-cCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 043480 300 KVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFL-R-EGSSAMAEKLLNQMRGMNLSPDRILYTTII 377 (493)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 377 (493)
...-+.++..|. +..+.+.++...... ..|. ..+..++..+. . ...+..+..++...-+........+.-..+
T Consensus 309 i~~N~~lL~l~t--nk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~a 383 (652)
T KOG2376|consen 309 IYRNNALLALFT--NKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRA 383 (652)
T ss_pred HHHHHHHHHHHh--hhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHH
Confidence 111112222222 223333333332221 1222 23333333332 2 224667777777666543222244555666
Q ss_pred HHHHccCCHhHHHHHHH--------HHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHH----H
Q 043480 378 DCLCKSREIGTAYGVFL--------DMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR--GAHPDEVT----F 443 (493)
Q Consensus 378 ~~~~~~~~~~~a~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~----~ 443 (493)
......|+++.|..++. .+.+.+..| .+...+...+.+.++.+.|..++...... .-.+.... +
T Consensus 384 Ql~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~ 461 (652)
T KOG2376|consen 384 QLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLM 461 (652)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHH
Confidence 67778888888888888 555554444 34455666677777777777777766431 01122222 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhchh
Q 043480 444 KLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDA 490 (493)
Q Consensus 444 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 490 (493)
..+...-.+.|+-++|..+++++.+. .++|..+...++.+|++.+.
T Consensus 462 ~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 462 REAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred HHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcCH
Confidence 33334445678888888888888874 36788888888888887654
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.52 E-value=6.9e-09 Score=93.24 Aligned_cols=436 Identities=11% Similarity=0.058 Sum_probs=288.7
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGL 89 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 89 (493)
..+..-+.-+...+++..-+++.+.+++.. +-...+.-..+-.+...|+.++|....+..+... ..+.++|..+.-.+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHH
Confidence 333333444556789999999999998854 5555666555566777899999999999887754 56677899888888
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 043480 90 CEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVG 169 (493)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (493)
....++ ++|++.+...... .+.|...|.-+.-.-++.|+++.......++.+.. +.....|..+..+
T Consensus 86 R~dK~Y-----------~eaiKcy~nAl~~-~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs 152 (700)
T KOG1156|consen 86 RSDKKY-----------DEAIKCYRNALKI-EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVA 152 (700)
T ss_pred hhhhhH-----------HHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHH
Confidence 888888 6677888888775 34467778777777788899999988888888752 2345678888888
Q ss_pred HhccCchhHHHHHHHHHHhCC-CCCChhhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHH
Q 043480 170 LCGDGKVDLAYELTVGAMKGK-VEFGVLIYNALI------SGFCRTGRIRRAMAIKSFMKWNGCEPDLVT-YNAILNYYC 241 (493)
Q Consensus 170 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~ 241 (493)
+.-.|+...|..+++...... ..|+...+.... ....+.|..+.|++.+..-... ..|-.. -..-...+.
T Consensus 153 ~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~ 230 (700)
T KOG1156|consen 153 QHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLM 230 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHH
Confidence 999999999999998887754 346666555433 3345677788888776655432 222222 234456677
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhHHHHH-HHHHccCCHHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHH
Q 043480 242 DEVMLDEAEKLVMEMESCGIEPDVYSYNQLL-KGLCNSNQLDKAY-MFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRA 319 (493)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 319 (493)
+.+++++|..++..+.... ||...|...+ .++.+-.+..++. .+|....+..+..... -..-++......-.+..
T Consensus 231 kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p-~Rlplsvl~~eel~~~v 307 (700)
T KOG1156|consen 231 KLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP-RRLPLSVLNGEELKEIV 307 (700)
T ss_pred HHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc-hhccHHHhCcchhHHHH
Confidence 8999999999999998764 6666665554 4443444444444 4454444432221111 11111111112233445
Q ss_pred HHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHH----HHHHhCC----------CCCCHHhHH--HHHHHHHcc
Q 043480 320 YKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLL----NQMRGMN----------LSPDRILYT--TIIDCLCKS 383 (493)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~----------~~~~~~~~~--~l~~~~~~~ 383 (493)
-+++..+.+.|+++-...+.++-. .....+-..++. ..+...| -+|+...|+ .++..+-..
T Consensus 308 dkyL~~~l~Kg~p~vf~dl~SLyk---~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~ 384 (700)
T KOG1156|consen 308 DKYLRPLLSKGVPSVFKDLRSLYK---DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKL 384 (700)
T ss_pred HHHHHHHhhcCCCchhhhhHHHHh---chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHc
Confidence 566677777777654333333322 111111111111 1111111 156665554 466777889
Q ss_pred CCHhHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043480 384 REIGTAYGVFLDMVEQGITPDV-ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRL 462 (493)
Q Consensus 384 ~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 462 (493)
|+++.|...++..+++ .|+. ..|..=.+.+...|+.++|..++++..+.+. ||...-..-..-..+..+.++|.++
T Consensus 385 g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 385 GDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEV 461 (700)
T ss_pred ccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHH
Confidence 9999999999999986 6664 3455556888999999999999999988643 3655555677778889999999999
Q ss_pred HHHHHHcCC
Q 043480 463 WDQMMEKGF 471 (493)
Q Consensus 463 ~~~~~~~~~ 471 (493)
.....+.|.
T Consensus 462 ~skFTr~~~ 470 (700)
T KOG1156|consen 462 LSKFTREGF 470 (700)
T ss_pred HHHhhhccc
Confidence 999988875
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=1.8e-08 Score=90.59 Aligned_cols=454 Identities=11% Similarity=0.069 Sum_probs=219.3
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH---hcC-ChhHHHHHHHHhccCCC---C
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLI---RHS-RFDLVQFYYQQMHPLGF---S 76 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~-~~~~a~~~~~~~~~~~~---~ 76 (493)
+.|-+.-.|-..|..-.. .-..+-.-+|+++.+. +|-+...|...+..-. ++. -.+.+...++...++.+ .
T Consensus 22 Rnp~svk~W~RYIe~k~~-sp~k~~~~lYERal~~-lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mH 99 (835)
T KOG2047|consen 22 RNPFSVKCWLRYIEHKAG-SPDKQRNLLYERALKE-LPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMH 99 (835)
T ss_pred cCchhHHHHHHHHHHHcc-CChHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHh
Confidence 445555556555554333 3334455677777776 4777777777774322 111 12333333333333221 1
Q ss_pred cChhhHHHHHHHHhccCChhhHHHHHHHHH-------------------------HHHHHHHHHHHhCCCCCCHhhHHHH
Q 043480 77 LTPFTYSRFISGLCEVKNFTLINILLDNMD-------------------------KLALEVFHKMVSKGREPDVVTYTIV 131 (493)
Q Consensus 77 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------------------------~~a~~~~~~~~~~g~~~~~~~~~~l 131 (493)
.-+..|...++.+..+++....+..++..+ +-+..++++.++ .++..-+-.
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eey 175 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEY 175 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHH
Confidence 334567777777888888865555554433 233334443322 122223334
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCC------CCCCHHhHHHHHHHHhccCch---hHHHHHHHHHHhCCCCCChhhHHHHH
Q 043480 132 IDGLCKAKEFDKAVQAWEHMIENG------IKPDNKACAALVVGLCGDGKV---DLAYELTVGAMKGKVEFGVLIYNALI 202 (493)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~ 202 (493)
+..+.+.+++++|-+.+...+... .+.+...|..+.....+.-+. -....+++.....-...--..|+.|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 444444445555444444443210 112223333333322222111 11122222222211111123677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----------------C------ChHHHHHHHHHHHHCC
Q 043480 203 SGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDE----------------V------MLDEAEKLVMEMESCG 260 (493)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------~------~~~~a~~~~~~~~~~~ 260 (493)
.-|.+.|.+++|..+|++..+. .....-|..+.++|+.- + +++-...-|+.+....
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 8888888888888888887765 23333344444443321 1 1111222222222111
Q ss_pred -----------CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHHHcCCHHHHHHHHH
Q 043480 261 -----------IEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR-----DKVSYNTVIEAFCKGGQTRRAYKLFE 324 (493)
Q Consensus 261 -----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~ 324 (493)
-+.+...|..-+. ...|+..+-...+.++...-.+. ....|..+...|-..|+.+.|..+|+
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1122222322222 22455555566666665532111 22346677777788888888888888
Q ss_pred HHHHcCCCcC---HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----------------CCHHhHHHHHHHHHccC
Q 043480 325 GMRRRGIELD---VVTFTILIKAFLREGSSAMAEKLLNQMRGMNLS-----------------PDRILYTTIIDCLCKSR 384 (493)
Q Consensus 325 ~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~ 384 (493)
+..+...+-- ..+|..-...-.+..+++.|.++++......-. .+...|+..++..-..|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 8776533211 223334444445567777787777766432111 12335666666666677
Q ss_pred CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh---cCCHHHHH
Q 043480 385 EIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD-EVTFKLLIGGLVQ---EKKLELAC 460 (493)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g~~~~a~ 460 (493)
-++....+|+++++..+. ++.........+-.+.-++++.+++++-+..=..|+ ...|+..+..+.+ ..+.+.|.
T Consensus 492 tfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 778888888887765433 222222222233344455666666655544312222 3344444444333 12456666
Q ss_pred HHHHHHHH
Q 043480 461 RLWDQMME 468 (493)
Q Consensus 461 ~~~~~~~~ 468 (493)
.+|+++++
T Consensus 571 dLFEqaL~ 578 (835)
T KOG2047|consen 571 DLFEQALD 578 (835)
T ss_pred HHHHHHHh
Confidence 66666665
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.2e-08 Score=86.80 Aligned_cols=270 Identities=12% Similarity=0.021 Sum_probs=155.8
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHH
Q 043480 191 VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQ 270 (493)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 270 (493)
++-|+.....+...+...|+..+|...|++....+ +-+........-.+...|+++....+...+.... ..+...|-.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 34566666677777777777777777777666442 1122222222233445666666666666655421 122222333
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCC
Q 043480 271 LLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGS 350 (493)
Q Consensus 271 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 350 (493)
-+.......++..|+.+-.+.++..+. +...+-.-...+...+++++|.-.|+...... +-+...|.-++..|...|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 333344556677777776666665433 44444444556666677777777777666542 2356677777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHH-HHHHc-cCCHhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChhHHHHH
Q 043480 351 SAMAEKLLNQMRGMNLSPDRILYTTII-DCLCK-SREIGTAYGVFLDMVEQGITPD-VISYNALINGLCKSSRVSEAMHL 427 (493)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 427 (493)
+.+|...-+...+.- +.+..+.+.+. ..+.- ..--++|..+++..+.. .|+ ....+.+...|...|..+.++.+
T Consensus 384 ~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHH
Confidence 777766655554421 34455554442 22222 22345666666666653 343 23455566666677777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 428 YEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 428 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
+++... ..||....+.|.+.+...+.+.+|...|..+++.
T Consensus 461 Le~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 461 LEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 777655 3567777777777777777777777777777653
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=3.2e-11 Score=102.44 Aligned_cols=200 Identities=10% Similarity=0.026 Sum_probs=121.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 043480 44 SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREP 123 (493)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~ 123 (493)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++ +.|.+.+++.... .+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~-----------~~A~~~~~~al~~-~~~ 97 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGEL-----------EKAEDSFRRALTL-NPN 97 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHhh-CCC
Confidence 4455566666666666666666666665543 33445556666666666666 4444555554443 233
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHH
Q 043480 124 DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIK-PDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALI 202 (493)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 202 (493)
+...+..+...+...|++++|.+.+++....... .....+..+...+...|++++|...+....... +.+...+..+.
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la 176 (234)
T TIGR02521 98 NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELA 176 (234)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHH
Confidence 4455666666666677777777777666653211 123455556666667777777777777666543 23445566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 043480 203 SGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMES 258 (493)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (493)
..+...|++++|...+++..... +.+...+..+...+...|+.++|..+.+.+..
T Consensus 177 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 177 ELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777777777777766552 44555555666666677777777777666554
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=9e-11 Score=111.55 Aligned_cols=278 Identities=8% Similarity=-0.031 Sum_probs=186.1
Q ss_pred CCChhhHHHHHHHHHh-----cCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHH
Q 043480 41 RVFSIDYNRFIGVLIR-----HSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHK 115 (493)
Q Consensus 41 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~ 115 (493)
+.+...|...+++... .+++++|..+|++.++.. +.+...|..+..++...+...... -....+.|...+++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~--~~~~~~~A~~~~~~ 329 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFD--KQNAMIKAKEHAIK 329 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcc--cchHHHHHHHHHHH
Confidence 5666767666665322 234679999999998874 334556666655554322100000 00001678888888
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCCh
Q 043480 116 MVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGV 195 (493)
Q Consensus 116 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 195 (493)
.++. .+.+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...++...+.... +.
T Consensus 330 Al~l-dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 330 ATEL-DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HHhc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 8886 34467788888889999999999999999999874 335677888899999999999999999999987522 33
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 043480 196 LIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGL 275 (493)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (493)
..+..++..+...|++++|...++++.....+.++..+..+..++...|+.++|...++++.... +.+....+.+...|
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~ 485 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEY 485 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHH
Confidence 33444455566789999999999998765423345557777888889999999999998876532 22333445555666
Q ss_pred HccCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043480 276 CNSNQLDKAYMFMVKKMEAKGL-RDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRG 330 (493)
Q Consensus 276 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 330 (493)
...| +.+...++.+.+.... +....+ .-..+.-.|+.+.+..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7777 4777767666553222 111222 33445556777766655 7777653
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=8e-11 Score=111.89 Aligned_cols=251 Identities=11% Similarity=0.029 Sum_probs=175.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 043480 209 GRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYC---------DEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSN 279 (493)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 279 (493)
+.+++|...|++..+.. +.+...|..+..++. ..+++++|...+++..+.+ +.+...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 45789999999988763 334555555554433 2345789999999988764 446777778888888899
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 043480 280 QLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLN 359 (493)
Q Consensus 280 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 359 (493)
++++|...++++....+. +...+..+...+...|++++|...+++..+.++. +...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999999887654 6667888888899999999999999999887443 22233344445667889999999998
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCC
Q 043480 360 QMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD-VISYNALINGLCKSSRVSEAMHLYEEMQIR-GAH 437 (493)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~ 437 (493)
++.+...+.++..+..+..++...|++++|...+.++... .|+ ....+.+...|...| +.|...++.+.+. .-.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 8876542334556777888888999999999999887654 333 334455556667667 4777777776542 112
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043480 438 PDEVTFKLLIGGLVQEKKLELACRLWDQMMEKG 470 (493)
Q Consensus 438 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 470 (493)
|....+ +-..+.-.|+.+.+..+ +++.+.|
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 222222 44456666776666655 7776653
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1e-11 Score=101.64 Aligned_cols=229 Identities=9% Similarity=-0.018 Sum_probs=135.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhcc
Q 043480 13 RAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEV 92 (493)
Q Consensus 13 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 92 (493)
+.+..+|.+.|.+.+|.+.|+..++. .|-+.+|..+..+|.+..+...|+.++.+-++.- +.++....-..+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 34566667777777777776666653 3555666666667777777777777766665541 22333233334444444
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc
Q 043480 93 KNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCG 172 (493)
Q Consensus 93 ~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (493)
++. +.|.++++...+. .+.++.+...+...|.-.++++-|+..|+++++.|+. +...|+.+.-+|.-
T Consensus 304 ~~~-----------~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~y 370 (478)
T KOG1129|consen 304 EQQ-----------EDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLY 370 (478)
T ss_pred HhH-----------HHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHh
Confidence 444 4455555555554 3445555555556666666677777777777666654 56666666666666
Q ss_pred cCchhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 043480 173 DGKVDLAYELTVGAMKGKVEF--GVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAE 250 (493)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 250 (493)
.+++|-++..|.........| -..+|-.+.......|++..|.+.|+....++ ..+...++.+.-.-.+.|++++|.
T Consensus 371 aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 371 AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHH
Confidence 666666666666665433222 23455555555666666666666666666543 344556666665566666666666
Q ss_pred HHHHHHHH
Q 043480 251 KLVMEMES 258 (493)
Q Consensus 251 ~~~~~~~~ 258 (493)
.++....+
T Consensus 450 sll~~A~s 457 (478)
T KOG1129|consen 450 SLLNAAKS 457 (478)
T ss_pred HHHHHhhh
Confidence 66666554
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=1.5e-10 Score=98.36 Aligned_cols=200 Identities=15% Similarity=0.020 Sum_probs=141.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHH
Q 043480 265 VYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKA 344 (493)
Q Consensus 265 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (493)
...+..+...+...|++++|...+.+.....+. +...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 345556666677777777777777776655432 455666667777777777777777777766532 245566667777
Q ss_pred HHHcCCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 043480 345 FLREGSSAMAEKLLNQMRGMNL-SPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSE 423 (493)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 423 (493)
+...|++++|...++...+... +.....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 7778888888888877765321 2234556667777888888888888888887653 3345677778888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 424 AMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 424 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888888765 233567777777888888888888888777754
No 71
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.45 E-value=1.4e-11 Score=113.73 Aligned_cols=275 Identities=13% Similarity=0.103 Sum_probs=173.9
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCC
Q 043480 111 EVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGK 190 (493)
Q Consensus 111 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 190 (493)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45556666677777777777777777777777776 7777766655556666667766666666655544
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-CCCCCChhhHH
Q 043480 191 VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMES-CGIEPDVYSYN 269 (493)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ 269 (493)
.|...+|..|..+|...|+... |+...+ -...+...+...|.-.....++..+.- .+.-||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~--- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE--- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---
Confidence 4566677777777777777554 222221 122233444555555555555444321 12223332
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcC
Q 043480 270 QLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREG 349 (493)
Q Consensus 270 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 349 (493)
..+....-.|.++.+++++..+....-. .+... .++-+.. ......++........-.|++.+|..++.+-...|
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcC
Confidence 2333344556666666665444332111 11111 1222222 22334444444433322589999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043480 350 SSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR 420 (493)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (493)
+.+.|..++.+|.+.|++.+..-|..++-+ .++...+..+++.|.+.|+.|+..|+...+..+...|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999999999999998888888877765 78888899999999999999999999888887777554
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=3.1e-11 Score=98.87 Aligned_cols=230 Identities=13% Similarity=0.083 Sum_probs=177.9
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 043480 234 NAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKG 313 (493)
Q Consensus 234 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (493)
+.+.++|.+.|.+.+|++.++...+. .|-+.||..+-+.|.+..++..|+.++.+-.+..+. ++....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHHH
Confidence 56778888888888888888887764 466778888888888888888888888887776432 444444455666677
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHH
Q 043480 314 GQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVF 393 (493)
Q Consensus 314 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 393 (493)
++.++|.++|+...+.. +.+......+...|.-.++++.|.+.++++.+.| ..++..|..+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 88888888888888763 3366666677777777888899999999988888 477888888888888888888888888
Q ss_pred HHHHhCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 394 LDMVEQGITPD--VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 394 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
++....--.|+ ..+|-.+.......||+..|.+.|+-....+.. +...++.|.-.-.+.|+.++|..+++.+...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 88875433343 356777777788889999999999888776433 6888888888888889999999988888754
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.40 E-value=9.6e-11 Score=106.06 Aligned_cols=245 Identities=16% Similarity=0.113 Sum_probs=155.1
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhC-------CCCCChhh-HHHHHHHHHhcCChhHHHHHHHHhccC----
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQS-------NCRVFSID-YNRFIGVLIRHSRFDLVQFYYQQMHPL---- 73 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 73 (493)
|.=..+...|..+|..+|+++.|..+++...+. . -|...+ .+.+...|...+++.+|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~-hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLK-HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCcc-CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 333456677999999999999999999988765 2 233333 344778899999999999999999764
Q ss_pred -C--CCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhccCCHHHHHHHHH
Q 043480 74 -G--FSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVV-TYTIVIDGLCKAKEFDKAVQAWE 149 (493)
Q Consensus 74 -~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~ 149 (493)
| .+.-..+++.|..+|.+.|++.+|...+ +.|.++++..... ..|.+. .++.+...+...+++++|..++.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~----e~Al~I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q 349 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYC----ERALEIYEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQ 349 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHH----HHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 2 1222457788888999999999999888 5677777774332 333333 46667788889999999999998
Q ss_pred HHHHC---CCCCC----HHhHHHHHHHHhccCchhHHHHHHHHHHhCC-------CCCChhhHHHHHHHHHhcCCHHHHH
Q 043480 150 HMIEN---GIKPD----NKACAALVVGLCGDGKVDLAYELTVGAMKGK-------VEFGVLIYNALISGFCRTGRIRRAM 215 (493)
Q Consensus 150 ~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~ 215 (493)
+..+. -+.++ ..+++.+...|...|++++|.+++.+++... ..-.-..++.+...|.+.++.++|.
T Consensus 350 ~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 350 KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 76542 11122 2456666666666777777766666655311 1111223445555555555555555
Q ss_pred HHHHHHHHC----C--CCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 043480 216 AIKSFMKWN----G--CEPDLVTYNAILNYYCDEVMLDEAEKLVMEM 256 (493)
Q Consensus 216 ~~~~~~~~~----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 256 (493)
++|.+...- | .+-...+|..|...|...|+++.|+++.+..
T Consensus 430 ~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 430 QLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 555443221 1 1112234455555555555555555554443
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.40 E-value=3.8e-09 Score=97.07 Aligned_cols=292 Identities=9% Similarity=0.054 Sum_probs=205.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---
Q 043480 132 IDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRT--- 208 (493)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 208 (493)
...+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.+ +.+..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 34567889999999999776554 33344556677888899999999999999999986 44556666666665222
Q ss_pred --CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHH
Q 043480 209 --GRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVML-DEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAY 285 (493)
Q Consensus 209 --~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 285 (493)
...+...++|+++... -|.......+.-.+.....+ ..+...+..+...|+| .+|+.+-..|.......-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 2567788899988765 34444333333223222233 2455566677777764 35666666666555555555
Q ss_pred HHHHHHHHcC--------------CCCCh--hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcC
Q 043480 286 MFMVKKMEAK--------------GLRDK--VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREG 349 (493)
Q Consensus 286 ~~~~~~~~~~--------------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 349 (493)
.++....... ..|.. .++..+.+.|...|++++|++.+++.+...+ ..+..|..-...+-+.|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHCC
Confidence 5555544321 11222 2456677888899999999999999998732 24677888889999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhh------H--HHHHHHHHhcCCh
Q 043480 350 SSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVIS------Y--NALINGLCKSSRV 421 (493)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~------~--~~l~~~~~~~g~~ 421 (493)
++.+|.+.++..++.+ .-|..+-+..+..+.++|++++|..++......+..|.... | .....+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999877 56777778888888999999999999999987654333221 1 3446788899999
Q ss_pred hHHHHHHHHHH
Q 043480 422 SEAMHLYEEMQ 432 (493)
Q Consensus 422 ~~a~~~~~~~~ 432 (493)
..|++.|....
T Consensus 322 ~~ALk~~~~v~ 332 (517)
T PF12569_consen 322 GLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHH
Confidence 99988776654
No 75
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.38 E-value=1.6e-07 Score=82.87 Aligned_cols=435 Identities=9% Similarity=0.076 Sum_probs=243.0
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
|+..|.|...|+.|++-+..+ .++++++.++++... .|.++..|...+....+.++++....+|.+.+.. ..+...
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDL 88 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDL 88 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhH
Confidence 678899999999999977666 999999999999876 4777889999999999999999999999999887 455666
Q ss_pred HHHHHHHHhcc-CChhhHHHHHHHHHHHHHHHHHHHH-hCCCCC-CHhhHHHHHHHH---------hccCCHHHHHHHHH
Q 043480 82 YSRFISGLCEV-KNFTLINILLDNMDKLALEVFHKMV-SKGREP-DVVTYTIVIDGL---------CKAKEFDKAVQAWE 149 (493)
Q Consensus 82 ~~~ll~~~~~~-~~~~~a~~~~~~~~~~a~~~~~~~~-~~g~~~-~~~~~~~l~~~~---------~~~~~~~~a~~~~~ 149 (493)
|...+.--.+. ++....+. .-.+.|+-.. +.|..+ +-..|+..+..+ ..+.+.+...++|.
T Consensus 89 W~lYl~YVR~~~~~~~~~r~-------~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYq 161 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYRE-------KMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQ 161 (656)
T ss_pred HHHHHHHHHHHccCcchHHH-------HHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHH
Confidence 77766544432 33333221 1122233222 223333 233455555432 23445667777787
Q ss_pred HHHHCCCCCCHHhHHH------HHHHH-------hccCchhHHHHHHHHHHh--CCCCCChhhHHHHHHHHHhcCCHHHH
Q 043480 150 HMIENGIKPDNKACAA------LVVGL-------CGDGKVDLAYELTVGAMK--GKVEFGVLIYNALISGFCRTGRIRRA 214 (493)
Q Consensus 150 ~~~~~~~~~~~~~~~~------l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a 214 (493)
++....+..=...|.. =++.. -+...+..|.++++++.. .|+.....+ .-..|-.++.
T Consensus 162 ral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~ 234 (656)
T KOG1914|consen 162 RALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEI 234 (656)
T ss_pred HHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHH
Confidence 7776422111111111 11100 011223333333333321 111111100 0000111111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccC------Ch--HHHHHHHHHH-HHCCCCCChhhH-H----HHHHHHHccCC
Q 043480 215 MAIKSFMKWNGCEPDLVTYNAILNYYCDEV------ML--DEAEKLVMEM-ESCGIEPDVYSY-N----QLLKGLCNSNQ 280 (493)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------~~--~~a~~~~~~~-~~~~~~~~~~~~-~----~l~~~~~~~~~ 280 (493)
.++ ..|..+|.-=-..+ .. ....-.+++. .-.+..|+.... . ..-+.+...|+
T Consensus 235 ~qv-------------~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d 301 (656)
T KOG1914|consen 235 QQV-------------ELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGD 301 (656)
T ss_pred HHH-------------HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcc
Confidence 100 00111111100000 00 0011111111 111111111000 0 00112222332
Q ss_pred -------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCC
Q 043480 281 -------LDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKG---GQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGS 350 (493)
Q Consensus 281 -------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 350 (493)
-+++..+++..+......+...|..+...--.. ...+.....++++...-..--..+|...+....+...
T Consensus 302 ~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eG 381 (656)
T KOG1914|consen 302 VPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEG 381 (656)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhh
Confidence 345555555555433322333333333211111 1355566666666654222233567778888888888
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 043480 351 SAMAEKLLNQMRGMNLSP-DRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYE 429 (493)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (493)
...|..+|.+..+.+..+ ++.++++++..|+ .++...|..+|+--+++ +..++.--...+.-+...++-..+..+|+
T Consensus 382 lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFE 459 (656)
T KOG1914|consen 382 LKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFE 459 (656)
T ss_pred HHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHH
Confidence 999999999999876555 6677788887766 57889999999886654 23344445677788888899999999999
Q ss_pred HHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 430 EMQIRGAHPD--EVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 430 ~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
+....++.|+ ..+|..++.--..-|+...+.++-+++...
T Consensus 460 r~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 460 RVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9988766664 688999999989999999999988887663
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.38 E-value=4.2e-10 Score=102.01 Aligned_cols=248 Identities=16% Similarity=0.090 Sum_probs=164.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhccC-----C-CCcCh-hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHH
Q 043480 41 RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL-----G-FSLTP-FTYSRFISGLCEVKNFTLINILLDNMDKLALEVF 113 (493)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~ 113 (493)
|.-..+...+...|...|+++.|..++++.++. | ..|.. ...+.+...|...+++.+|..++ +.|+.++
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly----~~AL~i~ 271 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLY----EEALTIR 271 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHH----HHHHHHH
Confidence 333455666889999999999999999998875 1 12333 23445777889999999998888 5667777
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC-----CC-CCCH-HhHHHHHHHHhccCchhHHHHHHHHH
Q 043480 114 HKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN-----GI-KPDN-KACAALVVGLCGDGKVDLAYELTVGA 186 (493)
Q Consensus 114 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 186 (493)
+.......+.-..+++.|..+|.+.|++++|...+++..+- |. .|.. ..++.+...+...+++++|..+++..
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 77765533444568899999999999999999988876542 11 1222 34556677778888888888877765
Q ss_pred HhCC---CC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHccCChHHHHHH
Q 043480 187 MKGK---VE----FGVLIYNALISGFCRTGRIRRAMAIKSFMKWNG-------CEPDLVTYNAILNYYCDEVMLDEAEKL 252 (493)
Q Consensus 187 ~~~~---~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~ 252 (493)
.+.- +. -...+++.|...|.+.|++++|.+++++..... ..-....++.+...|.+.+.+.+|.++
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l 431 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQL 431 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHH
Confidence 5411 11 123467777777777888877777777765421 111134456666677777777777777
Q ss_pred HHHHHH----CC--CCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 043480 253 VMEMES----CG--IEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKM 292 (493)
Q Consensus 253 ~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 292 (493)
|.+... .| .+....+|..|...|.+.|+++.|.++.....
T Consensus 432 ~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 432 FEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 766432 12 12223456666666666777766666655544
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=8.9e-08 Score=88.11 Aligned_cols=371 Identities=12% Similarity=0.052 Sum_probs=237.0
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCC-C
Q 043480 116 MVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEF-G 194 (493)
Q Consensus 116 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~ 194 (493)
+....+..+...|..+.-+....|+++.+-+.|++....- --....|..+...+...|.-..|..+++........| +
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 3333356788888888888899999999999998877542 2366778888888888888888888888776543223 2
Q ss_pred hhhHHHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHc-----------cCChHHHHHHHHHHHH
Q 043480 195 VLIYNALISGFC-RTGRIRRAMAIKSFMKWN--GC--EPDLVTYNAILNYYCD-----------EVMLDEAEKLVMEMES 258 (493)
Q Consensus 195 ~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~-----------~~~~~~a~~~~~~~~~ 258 (493)
...+...-..|. +.+..++++.+-.+.... +. ...+..+..+.-+|.. .....++.+.+++..+
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 333333333343 346677777666666541 10 1122333333333321 1123456677777766
Q ss_pred CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC-----
Q 043480 259 CGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRR-GIE----- 332 (493)
Q Consensus 259 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~----- 332 (493)
.+ +.|+...-.+.--|...++.+.|.....+....+...+...|..+.-.+...+++.+|+.+.+..... |..
T Consensus 473 ~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 473 FD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred cC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 54 23333333344456677888888888888888766668888888888888888888888888776543 110
Q ss_pred -------------cCHhHHHHHHHHHHH-----------------------cCCHHHHHHHHHHH--------HhCC---
Q 043480 333 -------------LDVVTFTILIKAFLR-----------------------EGSSAMAEKLLNQM--------RGMN--- 365 (493)
Q Consensus 333 -------------~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~--------~~~~--- 365 (493)
-...|...++..+-. .++..++.+....+ ...+
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 001122222221110 00111111111110 0001
Q ss_pred ------CC--CC------HHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043480 366 ------LS--PD------RILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEM 431 (493)
Q Consensus 366 ------~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 431 (493)
+. |+ ...|......+.+.+..++|...+.+.... .+.....|......+...|..++|.+.|...
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 01 11 124455666777788888888888887765 3445566777777888899999999999998
Q ss_pred HHcCCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHhhchhcc
Q 043480 432 QIRGAHP-DEVTFKLLIGGLVQEKKLELACR--LWDQMMEKGFTLDKTVSAALIEAIHLQDAAN 492 (493)
Q Consensus 432 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 492 (493)
... .| ++.+...+...+.+.|+...|.. ++..+++.+ +.+...|-.+-..+...|+.+
T Consensus 711 l~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 711 LAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred Hhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchH
Confidence 874 55 58889999999999999888887 999999864 456899999999999888754
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=4.3e-08 Score=83.45 Aligned_cols=408 Identities=12% Similarity=0.020 Sum_probs=228.0
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC--hhHHHHHHHHhccCCCCcChhhHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSR--FDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
.+...-...+..|.-.++-+.|+..+.++.... ...--+.++..+.+.|- +++....-+-+++. +.-......
T Consensus 95 ~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrec--p~aL~~i~~ 169 (564)
T KOG1174|consen 95 GDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIREC--PMALQVIEA 169 (564)
T ss_pred ccHHHHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhc--chHHHHHHH
Confidence 344555567888888899999998887765432 11122333333333332 22222222222221 111111111
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh--ccCCHHHHHHHHHHHHHC-CCCCCHH
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLC--KAKEFDKAVQAWEHMIEN-GIKPDNK 161 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~-~~~~~~~ 161 (493)
++..-. ..+...-..|.....+|+..+....+.++. -.++...|...+-.+... -++-|..
T Consensus 170 ll~l~v----------------~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~Nvh 233 (564)
T KOG1174|consen 170 LLELGV----------------NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEH 233 (564)
T ss_pred HHHHhh----------------cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHH
Confidence 111110 111111122322223444333333333332 334444444444333222 2444666
Q ss_pred hHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043480 162 ACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYC 241 (493)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 241 (493)
....+..++...|+.++|...|++....+ +-+........-.+.+.|+.+....+...+.... ......|..-+....
T Consensus 234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 234 LMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLY 311 (564)
T ss_pred HHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhh
Confidence 77777777888888888888887776543 1122222222333456677777777666665432 233444444444555
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 043480 242 DEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYK 321 (493)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 321 (493)
...++..|..+-+...+.+ +.+...+-.-...+...++.++|.-.|+.+..-.+. +..+|.-++.+|...|.+.+|.-
T Consensus 312 ~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHH
Confidence 6677777777777766543 233334444445667778888887777777665432 66778888888888888888777
Q ss_pred HHHHHHHcCCCcCHhHHHHHH-HHHH-HcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 043480 322 LFEGMRRRGIELDVVTFTILI-KAFL-REGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQ 399 (493)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 399 (493)
+-+...+. .+.+..+.+.+. ..+. ....-++|.++++...+.. |.-....+.+...+...|..+++..++++.+..
T Consensus 390 ~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 390 LANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 66665544 334555655553 2222 2334567777777776654 334456677777778888888888888887764
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 043480 400 GITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFK 444 (493)
Q Consensus 400 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 444 (493)
.||....+.|...+...+.+.+|+..|....+.+++ |..+..
T Consensus 468 --~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~-~~~sl~ 509 (564)
T KOG1174|consen 468 --FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK-SKRTLR 509 (564)
T ss_pred --ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc-chHHHH
Confidence 677777888888888888888888888887764322 344443
No 79
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=5.7e-12 Score=76.30 Aligned_cols=48 Identities=50% Similarity=1.019 Sum_probs=21.6
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 403 PDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGL 450 (493)
Q Consensus 403 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 450 (493)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.31 E-value=8.3e-09 Score=80.82 Aligned_cols=209 Identities=13% Similarity=-0.011 Sum_probs=165.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHH
Q 043480 267 SYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFL 346 (493)
Q Consensus 267 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (493)
+...+.-.|...|+...|..-+++.++..+. +..+|..+...|.+.|+.+.|.+-|++..+..+. +-...|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 3445666788899999999999999887654 7778888888899999999999999998876433 6677888888889
Q ss_pred HcCCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 043480 347 REGSSAMAEKLLNQMRGMN-LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAM 425 (493)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 425 (493)
..|.+++|...|+...... ......+|..+.-+..+.|+.+.|...|++.++.. +-...+...+.......|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999888632 22334678888888889999999999999998863 334566778888899999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043480 426 HLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAAL 481 (493)
Q Consensus 426 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 481 (493)
.+++.....+. ++..++...|+.-...|+.+.+.++=..+.+. -|.+.-+..+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~f 246 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQTF 246 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHhH
Confidence 99999887765 78888888899999999988888876666653 4555444443
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.31 E-value=4.6e-09 Score=82.23 Aligned_cols=195 Identities=11% Similarity=-0.024 Sum_probs=102.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhH
Q 043480 49 RFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTY 128 (493)
Q Consensus 49 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 128 (493)
-+.-.|.+.|++..|..-+++.++.. +.+..+|..+...|.+.|+. +.|.+.|+..++. .+.+-...
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~-----------~~A~e~YrkAlsl-~p~~GdVL 106 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGEN-----------DLADESYRKALSL-APNNGDVL 106 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCh-----------hhHHHHHHHHHhc-CCCccchh
Confidence 34445555555555555555555543 22334455555555555555 3444444444443 23344455
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 043480 129 TIVIDGLCKAKEFDKAVQAWEHMIENGIKP-DNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCR 207 (493)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (493)
|.....+|.+|++++|...|++......-| -..++..+.-+..+.|+.+.|...|++.++.. +-.......+.....+
T Consensus 107 NNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~ 185 (250)
T COG3063 107 NNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYK 185 (250)
T ss_pred hhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHh
Confidence 555555555566666666665555432111 23455555555555666666666666555543 2233344455555566
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 043480 208 TGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMES 258 (493)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (493)
.|++-.|...++.....+ .++..+.-..|+.-...|+.+.+.+.=..+.+
T Consensus 186 ~~~y~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 186 AGDYAPARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred cccchHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 666666666666665554 35555555555555566666655555444443
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.29 E-value=2.6e-09 Score=92.98 Aligned_cols=221 Identities=14% Similarity=0.011 Sum_probs=129.6
Q ss_pred HHcCChhHHHHHHHHHhhCC---CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChh
Q 043480 20 VKAGLIDQAVHVFDEMTQSN---CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFT 96 (493)
Q Consensus 20 ~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 96 (493)
...+..+.++.-+.+++... .......|..+...+...|++++|...|++.++.. +.++..|+.+...+...|++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~- 114 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF- 114 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH-
Confidence 33456677777777777532 11123446666677777788888888777777764 44567777777777777877
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCch
Q 043480 97 LINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKV 176 (493)
Q Consensus 97 ~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (493)
+.|.+.|+...+. .+.+..+|..+...+...|++++|++.|++..+. .|+..............++.
T Consensus 115 ----------~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~ 181 (296)
T PRK11189 115 ----------DAAYEAFDSVLEL-DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDP 181 (296)
T ss_pred ----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCH
Confidence 5556666666654 2334566677777777778888888888777765 34332222222233445677
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCC---CCCHHHHHHHHHHHHccCChHHHH
Q 043480 177 DLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKW---NGC---EPDLVTYNAILNYYCDEVMLDEAE 250 (493)
Q Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~---~~~~~~~~~ll~~~~~~~~~~~a~ 250 (493)
++|...|....... .++...+ .+... ..|+...+ ..+..+.+ ..+ +.....|..+...+...|++++|.
T Consensus 182 ~~A~~~l~~~~~~~-~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 182 KQAKENLKQRYEKL-DKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred HHHHHHHHHHHhhC-CccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 77777776554322 2222211 22222 23333222 23333321 110 123356777777778888888888
Q ss_pred HHHHHHHHCC
Q 043480 251 KLVMEMESCG 260 (493)
Q Consensus 251 ~~~~~~~~~~ 260 (493)
..|++..+.+
T Consensus 257 ~~~~~Al~~~ 266 (296)
T PRK11189 257 ALFKLALANN 266 (296)
T ss_pred HHHHHHHHhC
Confidence 8888877654
No 83
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=1.5e-11 Score=74.50 Aligned_cols=50 Identities=32% Similarity=0.511 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 043480 438 PDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHL 487 (493)
Q Consensus 438 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 487 (493)
||..+|++++++|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=7.7e-07 Score=79.64 Aligned_cols=425 Identities=14% Similarity=0.103 Sum_probs=241.7
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHH----HHHHHhcCChhHHHHHHHHhccCCCCc
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRF----IGVLIRHSRFDLVQFYYQQMHPLGFSL 77 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~ 77 (493)
+...|.++.++..=+.+.++.+.+++|+++.+.-.. ..+++.. +-+..+.+..++|+..++-. . ..
T Consensus 39 l~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~-~---~~ 108 (652)
T KOG2376|consen 39 LSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYRLNKLDEALKTLKGL-D---RL 108 (652)
T ss_pred HhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHHcccHHHHHHHHhcc-c---cc
Confidence 345578888888899999999999999966554221 1122222 23445789999999999832 2 33
Q ss_pred ChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 043480 78 TPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREP-DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGI 156 (493)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 156 (493)
+..+...-.+.+.+.+++ ++|+.+++.+.+.+.+- +...-..++.+- .+... ..+.....
T Consensus 109 ~~~ll~L~AQvlYrl~~y-----------dealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~l~~-~~~q~v~~ 169 (652)
T KOG2376|consen 109 DDKLLELRAQVLYRLERY-----------DEALDIYQHLAKNNSDDQDEERRANLLAVA-------AALQV-QLLQSVPE 169 (652)
T ss_pred chHHHHHHHHHHHHHhhH-----------HHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------HhhhH-HHHHhccC
Confidence 445666667778889999 67778888886653221 111111111111 11111 01222222
Q ss_pred CCCHHhHH---HHHHHHhccCchhHHHHHHHHHHhCCC------CCC-h-------hhHHHHHHHHHhcCCHHHHHHHHH
Q 043480 157 KPDNKACA---ALVVGLCGDGKVDLAYELTVGAMKGKV------EFG-V-------LIYNALISGFCRTGRIRRAMAIKS 219 (493)
Q Consensus 157 ~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~-~-------~~~~~l~~~~~~~~~~~~a~~~~~ 219 (493)
.| ..+|. ...-.+...|++.+|++++....+.+. ..+ . .+-..+..++...|+.++|.++|.
T Consensus 170 v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 170 VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 33 22333 334445678889998888887732110 001 1 122345666778899999999999
Q ss_pred HHHHCCCCCCHHHH----HHHHHHHHccCChH-HHHHHHHHHHHCC-------C--CCChhhH--HHHHHHHHccCCHHH
Q 043480 220 FMKWNGCEPDLVTY----NAILNYYCDEVMLD-EAEKLVMEMESCG-------I--EPDVYSY--NQLLKGLCNSNQLDK 283 (493)
Q Consensus 220 ~~~~~~~~~~~~~~----~~ll~~~~~~~~~~-~a~~~~~~~~~~~-------~--~~~~~~~--~~l~~~~~~~~~~~~ 283 (493)
...+.. ++|.... |.++..-....-++ .++..++...... + ..-...+ +.++.+| .+..+.
T Consensus 249 ~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q 325 (652)
T KOG2376|consen 249 DIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQ 325 (652)
T ss_pred HHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHH
Confidence 998876 4554322 33332211111111 1111222111000 0 0001111 2223333 334444
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHH--
Q 043480 284 AYMFMVKKMEAKGLRDKVSYNTVIEAFCK--GGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLN-- 359 (493)
Q Consensus 284 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-- 359 (493)
+.+........ .....+..++....+ ...+..+.+++...-+....-.....-.++......|+++.|.+++.
T Consensus 326 ~r~~~a~lp~~---~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 326 VRELSASLPGM---SPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHhCCcc---CchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44433222211 123344444444332 23577788888877766444345566677777888999999999998
Q ss_pred ------HHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhC--CCCCCHh----hHHHHHHHHHhcCChhHHHHH
Q 043480 360 ------QMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQ--GITPDVI----SYNALINGLCKSSRVSEAMHL 427 (493)
Q Consensus 360 ------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~----~~~~l~~~~~~~g~~~~a~~~ 427 (493)
.+.+.+ ..+.+...++..+.+.++.+.|.+++.+.+.. .-.+... ++..+...-.+.|+-++|..+
T Consensus 403 ~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 403 LESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred hhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 444443 34456667777788888877788887777632 0011222 333334444578999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 428 YEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQM 466 (493)
Q Consensus 428 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 466 (493)
++++.+.+ ++|..+...++.+|++. |.+.|..+-+.+
T Consensus 481 leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 481 LEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99998863 44888889999998886 577777765554
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.27 E-value=6.5e-08 Score=87.74 Aligned_cols=207 Identities=14% Similarity=-0.024 Sum_probs=139.5
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHH---HHHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYN---RFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
.|..+..|..+...+...|+.+.|.+.+.+..+.. +.+..... .....+...|++++|...+++..+.. +.+...
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a 79 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLA 79 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHH
Confidence 46778888899999999999999888888877654 33333222 22345678899999999999988764 334434
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 043480 82 YSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPD-VVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN 160 (493)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 160 (493)
+.. ...+...++..... ..+.+.++.. ....|+ ......+...+...|++++|.+.+++..+.. +.+.
T Consensus 80 ~~~-~~~~~~~~~~~~~~-------~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~ 148 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMR-------DHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDA 148 (355)
T ss_pred HHH-hHHHHHhcccccCc-------hhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 332 22222333322111 3333444332 112333 3445556678889999999999999999864 3355
Q ss_pred HhHHHHHHHHhccCchhHHHHHHHHHHhCCCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043480 161 KACAALVVGLCGDGKVDLAYELTVGAMKGKVE-FGV--LIYNALISGFCRTGRIRRAMAIKSFMKWN 224 (493)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (493)
..+..+...+...|++++|...+++....... ++. ..|..+...+...|++++|..++++....
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 67778888889999999999999988875321 222 24556778888999999999999887643
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.26 E-value=1.5e-08 Score=88.18 Aligned_cols=223 Identities=13% Similarity=-0.001 Sum_probs=155.2
Q ss_pred HhcCChhHHHHHHHHhccCC-CCc--ChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 043480 55 IRHSRFDLVQFYYQQMHPLG-FSL--TPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIV 131 (493)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 131 (493)
...+..+.++.-+.+++... ..| ....|..+...+...|++ +.|...|++..+. .+.+...|+.+
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~-----------~~A~~~~~~Al~l-~P~~~~a~~~l 104 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLR-----------ALARNDFSQALAL-RPDMADAYNYL 104 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHc-CCCCHHHHHHH
Confidence 33456677888887887643 122 235577778888899999 6666778877775 34568899999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 043480 132 IDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRI 211 (493)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 211 (493)
...+...|++++|.+.|++..+.. +-+..++..+..++...|++++|.+.|+...+.. |+..........+...++.
T Consensus 105 g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~ 181 (296)
T PRK11189 105 GIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDP 181 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCH
Confidence 999999999999999999999863 2246788888889999999999999999998864 3322222222334456789
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH---HCCC---CCChhhHHHHHHHHHccCCHHHHH
Q 043480 212 RRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEME---SCGI---EPDVYSYNQLLKGLCNSNQLDKAY 285 (493)
Q Consensus 212 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 285 (493)
++|...+++..... .|+...+ .+.. ...|+...+ ..+..+. +... +.....|..+...+.+.|++++|.
T Consensus 182 ~~A~~~l~~~~~~~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 182 KQAKENLKQRYEKL-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred HHHHHHHHHHHhhC-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 99999997765432 3333222 2222 234555443 2343333 1111 224568889999999999999999
Q ss_pred HHHHHHHHcCCC
Q 043480 286 MFMVKKMEAKGL 297 (493)
Q Consensus 286 ~~~~~~~~~~~~ 297 (493)
..|++.....+.
T Consensus 257 ~~~~~Al~~~~~ 268 (296)
T PRK11189 257 ALFKLALANNVY 268 (296)
T ss_pred HHHHHHHHhCCc
Confidence 999999987654
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=7.8e-08 Score=78.34 Aligned_cols=195 Identities=14% Similarity=0.120 Sum_probs=134.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH-HHHHHh
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR-FISGLC 90 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~ 90 (493)
+.+.+..+++..++++|++++....++. +.+......+..+|-...++..|-..|+++-.. .|...-|.. -.+.+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4556666788999999999999998886 557788888899999999999999999998765 344433322 234444
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHH--HHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 043480 91 EVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVI--DGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVV 168 (493)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 168 (493)
+.+.+ ..|+.+...|.. .++...-..-+ ......+++..+..+.++....| +..+.....-
T Consensus 90 ~A~i~-----------ADALrV~~~~~D---~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gC 152 (459)
T KOG4340|consen 90 KACIY-----------ADALRVAFLLLD---NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGC 152 (459)
T ss_pred Hhccc-----------HHHHHHHHHhcC---CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchh
Confidence 55666 556666666632 12222111111 22345678888888887776533 5556666666
Q ss_pred HHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043480 169 GLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCE 227 (493)
Q Consensus 169 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (493)
...+.|+++.|.+-|+...+.+--.+...||..+ +..+.++.+.|+++..++..+|++
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 6678899999999999888755344555676554 445678889999999988887753
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.21 E-value=4.3e-07 Score=82.37 Aligned_cols=199 Identities=13% Similarity=-0.018 Sum_probs=100.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cCH--hHHHHHHHHHH
Q 043480 270 QLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIE-LDV--VTFTILIKAFL 346 (493)
Q Consensus 270 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~ 346 (493)
.+...+...|++++|...+++.....+. +...+..+...+...|++++|...+++....... |+. ..+..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3444556666666666666666665433 4445555666666666666666666666544221 121 22334555666
Q ss_pred HcCCHHHHHHHHHHHHhCCC-CCCHHhH-H--HHHHHHHccCCHhHHHHH---HHHHHhCCC-CCCHhhHHHHHHHHHhc
Q 043480 347 REGSSAMAEKLLNQMRGMNL-SPDRILY-T--TIIDCLCKSREIGTAYGV---FLDMVEQGI-TPDVISYNALINGLCKS 418 (493)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~---~~~~~~~~~-~p~~~~~~~l~~~~~~~ 418 (493)
..|++++|..+++....... .+..... + .++.-+...|....+.+. ......... ............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 67777777777766643221 1111111 1 222222333332222221 111111100 00111112455666777
Q ss_pred CChhHHHHHHHHHHHcCCC-------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 419 SRVSEAMHLYEEMQIRGAH-------P-DEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 419 g~~~~a~~~~~~~~~~~~~-------p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
|+.+.|..+++.+....-. . ..........++...|++++|.+.+...+..
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888777542111 0 1222233334556788888888888887765
No 89
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=6.5e-07 Score=85.01 Aligned_cols=408 Identities=12% Similarity=0.074 Sum_probs=230.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHH----------HHHHHhccC----------
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQ----------FYYQQMHPL---------- 73 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~----------~~~~~~~~~---------- 73 (493)
.|+.-.-+.+++.--+..++...+.| ..++.++|++...|..+++-.+-. .+=.-..++
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 34445566777777888888888887 778889999999888766543321 110111111
Q ss_pred -C--------CCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHhccCCHH
Q 043480 74 -G--------FSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGR--EPDVVTYTIVIDGLCKAKEFD 142 (493)
Q Consensus 74 -~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~~~~~ 142 (493)
| +......|....+.+....+.+.=.+++.+--..-..+.+..++.+. ..|+..-.....++...+-+.
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 1 00011223333333333333322222221111122344444444332 224455555667777778888
Q ss_pred HHHHHHHHHHHCCCC-CCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 143 KAVQAWEHMIENGIK-PDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFM 221 (493)
Q Consensus 143 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 221 (493)
+-++++++++-.+.. .....+..++-.-+-.-+.....+..+++...+ .| .+...+..++-+++|..+|++.
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a~------~ia~iai~~~LyEEAF~ifkkf 1074 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD-AP------DIAEIAIENQLYEEAFAIFKKF 1074 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC-ch------hHHHHHhhhhHHHHHHHHHHHh
Confidence 888888877643211 111222222222222233444555555544332 11 2345566677788888888776
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh
Q 043480 222 KWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKV 301 (493)
Q Consensus 222 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 301 (493)
. .+....+.++.- -+..+.|.++-++. ..+.+|..+..+-.+.|...+|++-|-+. .|+.
T Consensus 1075 ~-----~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dDps 1134 (1666)
T KOG0985|consen 1075 D-----MNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPS 1134 (1666)
T ss_pred c-----ccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcH
Confidence 3 344445555542 35556666555443 24567888888888888888887766443 3677
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLC 381 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (493)
.|..+++...+.|.+++-.+.+....+....|.. -+.++-+|++.++..+.++.+. -|+......+.+-|.
T Consensus 1135 ~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf 1205 (1666)
T KOG0985|consen 1135 NYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCF 1205 (1666)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHh
Confidence 7888888888888888888888877776554443 3567778888887776555431 466666667777777
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH------------------------HHHcCCC
Q 043480 382 KSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEE------------------------MQIRGAH 437 (493)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~------------------------~~~~~~~ 437 (493)
..|.++.|.-+|.... .|..|...+...|++..|...-++ |...++-
T Consensus 1206 ~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~ii 1276 (1666)
T KOG0985|consen 1206 EEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNII 1276 (1666)
T ss_pred hhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEE
Confidence 7777776666654432 244444444444444444333222 2222222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 438 PDEVTFKLLIGGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 438 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 467 (493)
....-..-|+..|...|-+++...+++..+
T Consensus 1277 vhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1277 VHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred EehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 345556667777777788887777777665
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=5.6e-08 Score=79.14 Aligned_cols=295 Identities=16% Similarity=0.105 Sum_probs=199.0
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHH-HHH
Q 043480 125 VVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNA-LIS 203 (493)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~ 203 (493)
.--+.+++..+.+..++.+|++++..-.++. +.+...++.+..+|....++..|-..++++... .|...-|.. -..
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 3346667777778889999999998887763 226778888889999999999999999988765 344443432 244
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH
Q 043480 204 GFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILN--YYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQL 281 (493)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 281 (493)
.+.+.+.+.+|+++...|... |+...-..-+. .....+++..+..++++.... .+..+.....-...+.|++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccH
Confidence 566788899999998888742 22222222222 223578888888888887643 2334444444455688999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-------------CHh--------HHHH
Q 043480 282 DKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIEL-------------DVV--------TFTI 340 (493)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~--------~~~~ 340 (493)
+.|.+-|....+.++-.....|+..+..| +.++.+.|++...+++++|++. |.. .-+.
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 99999999999887776777888766544 5688999999999988876541 211 1123
Q ss_pred HHH-------HHHHcCCHHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043480 341 LIK-------AFLREGSSAMAEKLLNQMRG-MNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALI 412 (493)
Q Consensus 341 l~~-------~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 412 (493)
++. .+.+.|+++.|.+.+-.|.- .....|++|...+.-. -..+++....+-+.-+++... -...||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHH
Confidence 333 34577888888888877753 2224456665544322 124555556555666665533 3457888888
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 043480 413 NGLCKSSRVSEAMHLYEEM 431 (493)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~ 431 (493)
-.||+..-++.|-.++.+-
T Consensus 318 llyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHhhhHHHhHHHHHHhhC
Confidence 8999988888888877664
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=5.1e-07 Score=79.89 Aligned_cols=390 Identities=14% Similarity=0.064 Sum_probs=209.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcC-hhhHHHHHHHHhccC
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLT-PFTYSRFISGLCEVK 93 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~ 93 (493)
-..+.+..|+++.|+.+|.+.+..+ |+|...|.--..+|...|+|++|++=-.+.++. .|+ +..|+....++.-.|
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcc
Confidence 3456778899999999999999987 668888999999999999999999887777665 455 467899999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHH---HHHHHHHHHCC---CCCCHHhHHHHH
Q 043480 94 NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKA---VQAWEHMIENG---IKPDNKACAALV 167 (493)
Q Consensus 94 ~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~~---~~~~~~~~~~l~ 167 (493)
++++ |+..|.+-++. .+.+...++-+..++.......+. -.++..+.... .......|..++
T Consensus 85 ~~~e-----------A~~ay~~GL~~-d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 85 DYEE-----------AILAYSEGLEK-DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred cHHH-----------HHHHHHHHhhc-CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 9954 44555555543 233444555555554111000000 00111111000 000111222222
Q ss_pred HHHhc----------cCchhHHHHHHHHHH-----hC-------CCCC----------------------ChhhHHHHHH
Q 043480 168 VGLCG----------DGKVDLAYELTVGAM-----KG-------KVEF----------------------GVLIYNALIS 203 (493)
Q Consensus 168 ~~~~~----------~~~~~~a~~~~~~~~-----~~-------~~~~----------------------~~~~~~~l~~ 203 (493)
..+-+ ..++..+.-.+..+. .. +..| -..-...+.+
T Consensus 153 ~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 153 EIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred HHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 11111 001111111110000 00 0001 0112334566
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHH-------HHHHHHH
Q 043480 204 GFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYN-------QLLKGLC 276 (493)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~ 276 (493)
...+..+++.+++-+....... -+..-++....+|...|.+..+........+.|-. ....|+ .+..+|.
T Consensus 233 aaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhh
Confidence 6666677777777777776553 34444556666677777777666666555544421 111122 2333555
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHH
Q 043480 277 NSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEK 356 (493)
Q Consensus 277 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 356 (493)
+.++++.++..|.+.+.....|+.. .+....+++.+..+...-.+... ..-...-...+.+.|++..|..
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHH
Confidence 6667777777777766544332221 12223333333333333222111 1111222445566677777777
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 357 LLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
.|.++++.. |.|...|..-.-+|.+.|.+..|+.--+..++.. ++....|..=..++....+++.|.+.|++..+.
T Consensus 380 ~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 380 HYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777776655 5666677777777777777777776666666541 222333443344455556677777777776664
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.12 E-value=5.7e-06 Score=78.83 Aligned_cols=249 Identities=9% Similarity=-0.087 Sum_probs=128.2
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCC------C
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG------F 75 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~ 75 (493)
++..|.|...|..+.++|.++|++..|+++|+++...+ |.+...-.......+..|++.+|+..+...+... .
T Consensus 589 LR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q 667 (1238)
T KOG1127|consen 589 LRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQ 667 (1238)
T ss_pred hcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678888889999999999999999999998888765 3333333334445667888888888887776531 0
Q ss_pred CcChhhHHHHHHHHhccCChhhHHHHHHHHH---------------------HH----------------HHHHHHH-HH
Q 043480 76 SLTPFTYSRFISGLCEVKNFTLINILLDNMD---------------------KL----------------ALEVFHK-MV 117 (493)
Q Consensus 76 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---------------------~~----------------a~~~~~~-~~ 117 (493)
..-..++..+...+...|=...+...+++.. .. -..+|.. ..
T Consensus 668 ~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e 747 (1238)
T KOG1127|consen 668 NGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLE 747 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 0011122222222222222222222222211 00 0111111 11
Q ss_pred hCCCC--------------------CCHhhHHHHHHHHhc-------cC-CHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 043480 118 SKGRE--------------------PDVVTYTIVIDGLCK-------AK-EFDKAVQAWEHMIENGIKPDNKACAALVVG 169 (493)
Q Consensus 118 ~~g~~--------------------~~~~~~~~l~~~~~~-------~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (493)
..+.- .+..+|..++..|.+ .+ +-..|+..+.+.++.. ..+..+|+.|...
T Consensus 748 ~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl 826 (1238)
T KOG1127|consen 748 KTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL 826 (1238)
T ss_pred hcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh
Confidence 11111 112334344433333 11 2336777777776542 2245556555544
Q ss_pred HhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 043480 170 LCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEA 249 (493)
Q Consensus 170 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 249 (493)
...|.+.-+...|-+..... +....+|..+.-.+.++.+++.|...|...+... +.+...|.-........|+.-+.
T Consensus 827 -sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~ 903 (1238)
T KOG1127|consen 827 -SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIER 903 (1238)
T ss_pred -hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHH
Confidence 55566666666665554433 4455666666666777777777777777666543 33444443333333344444444
Q ss_pred HHHHHH
Q 043480 250 EKLVME 255 (493)
Q Consensus 250 ~~~~~~ 255 (493)
..+|..
T Consensus 904 ~~lfaH 909 (1238)
T KOG1127|consen 904 LILFAH 909 (1238)
T ss_pred HHHHHh
Confidence 444443
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.10 E-value=2.6e-06 Score=71.22 Aligned_cols=302 Identities=12% Similarity=0.048 Sum_probs=189.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcCh-hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 043480 44 SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTP-FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGRE 122 (493)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~ 122 (493)
+.-..-+...+...|++..|+.-|...++.+ |+. .++-.-...|...|+. +.|+.-+.+.++ .+
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGks-----------k~al~Dl~rVle--lK 102 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKS-----------KAALQDLSRVLE--LK 102 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCC-----------ccchhhHHHHHh--cC
Confidence 3334456677778888888888888876542 332 2333344556667776 445555666655 46
Q ss_pred CCHhh-HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--HHh------------HHHHHHHHhccCchhHHHHHHHHHH
Q 043480 123 PDVVT-YTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD--NKA------------CAALVVGLCGDGKVDLAYELTVGAM 187 (493)
Q Consensus 123 ~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~ 187 (493)
||... -..-...+.+.|.+++|..=|+..+....... ... ....+..+...|+...|+.....++
T Consensus 103 pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~ll 182 (504)
T KOG0624|consen 103 PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLL 182 (504)
T ss_pred ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHH
Confidence 66432 22233467788888888888888887632111 111 1223445567788889999988888
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhh
Q 043480 188 KGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYS 267 (493)
Q Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 267 (493)
+.. +.+...|..-..+|...|++..|+.=++...+.. ..+..++-.+...+...|+.+.++...++..+.+ ||...
T Consensus 183 Ei~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~ 258 (504)
T KOG0624|consen 183 EIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKL 258 (504)
T ss_pred hcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhh
Confidence 865 6788888888899999999999988777776654 4466666677777888899999988888888743 55432
Q ss_pred H----HHH---------HHHHHccCCHHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 043480 268 Y----NQL---------LKGLCNSNQLDKAYMFMVKKMEAKGLRDKV---SYNTVIEAFCKGGQTRRAYKLFEGMRRRGI 331 (493)
Q Consensus 268 ~----~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 331 (493)
. ..+ +......+++.++++..+..++..+..... .+..+-.++...+++.+|++...+.....
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d- 337 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID- 337 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-
Confidence 1 111 112234556666666666666554432222 23334445555666667766666666541
Q ss_pred CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 043480 332 ELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN 365 (493)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 365 (493)
+.|..++.--..+|.....++.|+.-|+...+.+
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 2235566666666666666777776666666544
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=1e-05 Score=75.60 Aligned_cols=182 Identities=14% Similarity=0.133 Sum_probs=125.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccC
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVK 93 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 93 (493)
..+......|.+++|..+|.+..+.+ .+=..|...|.+++|.++-+.--+ +.. ..+|.....-+...+
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DR--iHL-r~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDR--IHL-RNTYYNYAKYLEARR 872 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccc--eeh-hhhHHHHHHHHHhhc
Confidence 34555677788889988888876533 334566778899999888765322 122 235666677777888
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhCC--------CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 043480 94 NFTLINILLDNMDKLALEVFHKMVSKG--------REPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAA 165 (493)
Q Consensus 94 ~~~~a~~~~~~~~~~a~~~~~~~~~~g--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (493)
+.+.|++.+++.-..|.++++-+.+.- ...|...|.-....+-..|+.+.|+.+|..... |..
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 999999999887767777777665420 112333444444555567888888888877654 456
Q ss_pred HHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 166 LVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
+++..|-.|+.++|-++-++.. |....-.+.+.|...|++.+|...|.+..
T Consensus 944 ~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred heeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6777788888888888766533 45555668888888888888888887765
No 95
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.08 E-value=1.4e-06 Score=80.23 Aligned_cols=242 Identities=17% Similarity=0.187 Sum_probs=140.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccC
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVK 93 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 93 (493)
+.|+.|.+.|.+.+|.+....-.. +..|......+..++.+..-|++|-.+|+++.. | ...+.+|.+-.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d----~-----dkale~fkkgd 688 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD----F-----DKALECFKKGD 688 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----H-----HHHHHHHHccc
Confidence 457788888888888776533222 235566777777788887778888888877743 2 22233443333
Q ss_pred ChhhHHHHHHHHH-HHHHH---HHH-HHHhCCCCCC--------HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 043480 94 NFTLINILLDNMD-KLALE---VFH-KMVSKGREPD--------VVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN 160 (493)
Q Consensus 94 ~~~~a~~~~~~~~-~~a~~---~~~-~~~~~g~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 160 (493)
-+..|.++..-.. .+... .+. .+...| +.| ....-..+.+......+.+|+.+++.+.... .-.
T Consensus 689 af~kaielarfafp~evv~lee~wg~hl~~~~-q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk--~~s 765 (1636)
T KOG3616|consen 689 AFGKAIELARFAFPEEVVKLEEAWGDHLEQIG-QLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQK--TAS 765 (1636)
T ss_pred HHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH-hHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhc--ccc
Confidence 3433333222111 00000 000 000000 001 0111223445556778889999998888753 234
Q ss_pred HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043480 161 KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYY 240 (493)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 240 (493)
.-|..+...|...|+++.|.++|.+.- .++..|..|.+.|+|+.|.++-.+.. |.......|-.-..-.
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedl 834 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDL 834 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhH
Confidence 557778888999999999999886543 46778889999999999999887765 2233444455545555
Q ss_pred HccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 043480 241 CDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMV 289 (493)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 289 (493)
-..|++.+|+++|-.+. .|+ ..+.+|-+.|..+..+.+..
T Consensus 835 dehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHH
Confidence 56677777766653332 122 23445555555555544443
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3.5e-06 Score=74.82 Aligned_cols=370 Identities=14% Similarity=0.117 Sum_probs=235.1
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHhHHH
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD-NKACAA 165 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ 165 (493)
.+....|++ +.|+..|.+.+.. .++|...|..-..+|.+.|++++|++=-.+-++. .|+ ...|+.
T Consensus 10 naa~s~~d~-----------~~ai~~~t~ai~l-~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r 75 (539)
T KOG0548|consen 10 NAAFSSGDF-----------ETAIRLFTEAIML-SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSR 75 (539)
T ss_pred HhhcccccH-----------HHHHHHHHHHHcc-CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHH
Confidence 345567888 6778888888887 4558888999999999999999998876666664 566 478999
Q ss_pred HHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH---HHHHHHHHCC---CCCCHHHHHHHHHH
Q 043480 166 LVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAM---AIKSFMKWNG---CEPDLVTYNAILNY 239 (493)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~---~~~~~~~~~~ll~~ 239 (493)
...++...|++++|...|.+-++.. +.+...++.+..++.......+.. .++..+.... .......|..++..
T Consensus 76 ~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 76 KGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEI 154 (539)
T ss_pred hHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence 9999999999999999999998875 556667777777762211000000 0111110000 00011112222222
Q ss_pred HHc----------cCChHHHHHHHHH-----HHHCC-------CCC----------------------ChhhHHHHHHHH
Q 043480 240 YCD----------EVMLDEAEKLVME-----MESCG-------IEP----------------------DVYSYNQLLKGL 275 (493)
Q Consensus 240 ~~~----------~~~~~~a~~~~~~-----~~~~~-------~~~----------------------~~~~~~~l~~~~ 275 (493)
+-+ -..+..+...+.. ....+ ..| -..-...+.++.
T Consensus 155 ~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 155 IQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred hhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 111 0011111111110 00000 011 011234667788
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHH-------HHHHHHHHc
Q 043480 276 CNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFT-------ILIKAFLRE 348 (493)
Q Consensus 276 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~ 348 (493)
.+..+++.+.+.+...+... .+..-++....+|...|.+..+...-....+.|.. ...-|+ .+..+|.+.
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhH
Confidence 88888888888888888765 35555667777788888777777666666655432 122222 233455666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHh-------------------------HHHHHHHHHccCCHhHHHHHHHHHHhCCCCC
Q 043480 349 GSSAMAEKLLNQMRGMNLSPDRIL-------------------------YTTIIDCLCKSREIGTAYGVFLDMVEQGITP 403 (493)
Q Consensus 349 ~~~~~a~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 403 (493)
++++.+...|.+.......|+... ...-...+.+.|++..|...|.++++.. +-
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~ 390 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE 390 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence 778888888877654332333211 1112445667899999999999999875 55
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043480 404 DVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSA 479 (493)
Q Consensus 404 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 479 (493)
|...|....-+|.+.|.+..|+.-.+..++. .| ....|.-=..++....+++.|.+.|.+.++. .|+..-+.
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~ 463 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAI 463 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHH
Confidence 7889999999999999999999998888875 34 3555555566677778899999999999876 35544333
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=1.3e-07 Score=84.29 Aligned_cols=254 Identities=13% Similarity=0.045 Sum_probs=187.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCC
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKN 94 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 94 (493)
...-+++.|++.+|.-.|+...+.+ |.+...|..|......+++-..|+..+++.++.. +.|..+.-.|.-.|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 4456889999999999999999997 8889999999999999999999999999999875 5566777778778887776
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCCC--------CHhhHHHHHHHHhccCCHHHHHHHHHHHH-HCCCCCCHHhHHH
Q 043480 95 FTLINILLDNMDKLALEVFHKMVSKGREP--------DVVTYTIVIDGLCKAKEFDKAVQAWEHMI-ENGIKPDNKACAA 165 (493)
Q Consensus 95 ~~~a~~~~~~~~~~a~~~~~~~~~~g~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ 165 (493)
- ..|+..++..+...++- +...-+. ..+.....+....++|-.+. ..+..+|......
T Consensus 369 q-----------~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~ 435 (579)
T KOG1125|consen 369 Q-----------NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSG 435 (579)
T ss_pred H-----------HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhh
Confidence 6 56667777765431100 0000000 12222233455666666654 4454578888889
Q ss_pred HHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccC
Q 043480 166 LVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPD-LVTYNAILNYYCDEV 244 (493)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~ 244 (493)
|...|...|.+++|.+.|+..+... +-|...||.|...++...+.++|+..|.+.++. .|+ +.+.-.|.-+|...|
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhh
Confidence 9999999999999999999999875 567889999999999999999999999999987 555 344445666788999
Q ss_pred ChHHHHHHHHHHHHCC---------CCCChhhHHHHHHHHHccCCHHHHHH
Q 043480 245 MLDEAEKLVMEMESCG---------IEPDVYSYNQLLKGLCNSNQLDKAYM 286 (493)
Q Consensus 245 ~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~ 286 (493)
.+++|...|-..+... ..++...|..|=.++.-.++.|.+..
T Consensus 513 ~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 513 AYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 9999998887654221 11234677776666666676664443
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.05 E-value=1.2e-06 Score=83.13 Aligned_cols=437 Identities=10% Similarity=-0.014 Sum_probs=202.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCC-CcChhhHHHHHHHH
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF-SLTPFTYSRFISGL 89 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~ 89 (493)
.|..|...|..-.+...|.+.|+.+-+.+ +.+...+......|++..+++.|..+.-..-+... ..-..-|..+.-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 34444444444444444555555444443 33444444444444444445444444222111100 00001111122222
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHH
Q 043480 90 CEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN-KACAALVV 168 (493)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~ 168 (493)
...++. ..+..-|+...+. .+.|...|..++.+|.+.|++..|+++|.+.... .|+. ..-.....
T Consensus 573 Lea~n~-----------h~aV~~fQsALR~-dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~ 638 (1238)
T KOG1127|consen 573 LEAHNL-----------HGAVCEFQSALRT-DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAV 638 (1238)
T ss_pred cCccch-----------hhHHHHHHHHhcC-CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHH
Confidence 333333 4566666666664 3446778888888888888888888888887764 3432 22222233
Q ss_pred HHhccCchhHHHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCCHH-------HHHHHHHHHHHCCCCCCHHHHHH
Q 043480 169 GLCGDGKVDLAYELTVGAMKGK------VEFGVLIYNALISGFCRTGRIR-------RAMAIKSFMKWNGCEPDLVTYNA 235 (493)
Q Consensus 169 ~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ 235 (493)
..+..|.+.++...+..+.... ...-..++..+...+.-.|-.. ++++.|.-...+....+...|-.
T Consensus 639 ~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~ 718 (1238)
T KOG1127|consen 639 MECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIV 718 (1238)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 4466788888887777665421 0111222222222222222222 22222222222221122222222
Q ss_pred HHHHHHccCChH------HHHHHH-HHHHHCCC--------------------CCChhhHHHHHHHHHc----c----CC
Q 043480 236 ILNYYCDEVMLD------EAEKLV-MEMESCGI--------------------EPDVYSYNQLLKGLCN----S----NQ 280 (493)
Q Consensus 236 ll~~~~~~~~~~------~a~~~~-~~~~~~~~--------------------~~~~~~~~~l~~~~~~----~----~~ 280 (493)
+..+|.-.-..+ ....++ .+....+. ..+..+|..++..|.+ . .+
T Consensus 719 asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~ 798 (1238)
T KOG1127|consen 719 ASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKD 798 (1238)
T ss_pred HhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchh
Confidence 221111000000 000000 00111111 1123333333332222 1 12
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043480 281 LDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQ 360 (493)
Q Consensus 281 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 360 (493)
...|...+.+.++.... +...|+.|.-. ...|++.-+...|-+-.... +....+|..+...+....+++.|...|..
T Consensus 799 ~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 799 ACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred HHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHh
Confidence 23455555555543322 45556555443 44455555555554444332 22455666666666777778888888877
Q ss_pred HHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHH--HH--hCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH-----
Q 043480 361 MRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLD--MV--EQGITPDVISYNALINGLCKSSRVSEAMHLYEEM----- 431 (493)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--~~--~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~----- 431 (493)
.+... |.+...|-.....-...|+.-++..+|.- .. ..|--|...-|-+........|+.++-+...+.+
T Consensus 876 ~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 876 VQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred hhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 77654 45555555555545556666666666654 11 1233444444444444445566655544433333
Q ss_pred -----HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 432 -----QIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 432 -----~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 467 (493)
.. +.+-....|...+....+.+.+++|.....++.
T Consensus 955 al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 955 ALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 22 122246677777777777777777766665543
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.05 E-value=2e-08 Score=86.07 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=63.9
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHH----cC
Q 043480 274 GLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLR----EG 349 (493)
Q Consensus 274 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 349 (493)
.+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+. . +..+...+..++.. ..
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~-eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D-EDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S-CCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-CcHHHHHHHHHHHHHHhCch
Confidence 344455555555444321 13334444455555555555555555555443 1 22223333333222 12
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh-hHHHHHH
Q 043480 350 SSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRV-SEAMHLY 428 (493)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~ 428 (493)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+ +-++.+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 345555555554432 23444555555555555555555555555544332 22334444444444444444 3344444
Q ss_pred HHHHH
Q 043480 429 EEMQI 433 (493)
Q Consensus 429 ~~~~~ 433 (493)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.03 E-value=4.3e-06 Score=86.09 Aligned_cols=382 Identities=12% Similarity=0.013 Sum_probs=226.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHh
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (493)
+....+..+...|++.+|...+..+.... .-..........+...|+++.+..+++.+.......++.........+.
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 44555667778888888877665542211 0011122233445667888888888776632211222333334445556
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HhHH
Q 043480 91 EVKNFTLINILLDNMDKLALEVFHKMVSKGREPDV--VTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN----KACA 164 (493)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 164 (493)
..++++++...+... .+.+.... .+..+.. .....+...+...|++++|...+++....-...+. .+..
T Consensus 421 ~~g~~~~a~~~l~~a----~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 421 SQHRYSEVNTLLARA----EQELKDRN-IELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HCCCHHHHHHHHHHH----HHhccccC-cccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 778886665444322 11111100 0001111 12223345567899999999999988763111121 2345
Q ss_pred HHHHHHhccCchhHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHH
Q 043480 165 ALVVGLCGDGKVDLAYELTVGAMKGKV-----EFGVLIYNALISGFCRTGRIRRAMAIKSFMKWN----GCE--P-DLVT 232 (493)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~ 232 (493)
.+...+...|+++.|...+.+...... .....++..+...+...|+++.|...+++.... +.. + ....
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 566667789999999999888774211 111234556677788899999999988876542 211 1 1233
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCC--CCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-ChhhH----
Q 043480 233 YNAILNYYCDEVMLDEAEKLVMEMESCG--IEP--DVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR-DKVSY---- 303 (493)
Q Consensus 233 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~---- 303 (493)
+..+...+...|++++|...+++..... ..+ ....+..+...+...|+.+.|...+.......... ....+
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 4445566677899999999988875421 112 12334445667788999999999888875531111 11111
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH---hHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHhHH
Q 043480 304 -NTVIEAFCKGGQTRRAYKLFEGMRRRGIELDV---VTFTILIKAFLREGSSAMAEKLLNQMRGM----NLSP-DRILYT 374 (493)
Q Consensus 304 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~ 374 (493)
...+..+...|+.+.|..++............ .....+..++...|+.++|...++..... +... ...+..
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~ 735 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLI 735 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 11223445578899998887775542211111 11345666778899999999999887642 2222 224566
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhC
Q 043480 375 TIIDCLCKSREIGTAYGVFLDMVEQ 399 (493)
Q Consensus 375 ~l~~~~~~~~~~~~a~~~~~~~~~~ 399 (493)
.+..++...|+.++|...+.+..+.
T Consensus 736 ~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 736 LLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777888999999999999998865
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=1.5e-07 Score=83.84 Aligned_cols=249 Identities=12% Similarity=0.046 Sum_probs=177.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH
Q 043480 204 GFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDK 283 (493)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 283 (493)
-+.+.|++.+|.-.|+...+.. |-+...|..|....+..++-..|+..+++..+.. +.+......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 4567888888888888888775 6677888888888888888888999888888764 4456777778888888888888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHH-----------HHHHHcCCHHHHHHHHHHHHH-cCCCcCHhHHHHHHHHHHHcCCH
Q 043480 284 AYMFMVKKMEAKGLRDKVSYNTVI-----------EAFCKGGQTRRAYKLFEGMRR-RGIELDVVTFTILIKAFLREGSS 351 (493)
Q Consensus 284 a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~ 351 (493)
|+..+.+-+...+.. ..+. ..+.....+....++|-++.. .+..+|+.....|.-.|--.|.+
T Consensus 372 Al~~L~~Wi~~~p~y-----~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKY-----VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCccc-----hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 988888887654321 0000 011111223344455555443 34346777788888888888999
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHH
Q 043480 352 AMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDV-ISYNALINGLCKSSRVSEAMHLYEE 430 (493)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (493)
++|...|+.+.... |.|..+||.|...++...+.++|+..|+++++. .|+. .+...|.-+|...|.+++|...|-.
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999888765 667788999998888888899999999998874 6663 4556677788889999999888876
Q ss_pred HHHc---------CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043480 431 MQIR---------GAHPDEVTFKLLIGGLVQEKKLELACRL 462 (493)
Q Consensus 431 ~~~~---------~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 462 (493)
.+.. ...++..+|.+|=.++.-.++.|-+.+.
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 5432 1112345777777666667776655444
No 102
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=2.8e-05 Score=74.44 Aligned_cols=161 Identities=16% Similarity=0.096 Sum_probs=94.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 043480 300 KVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDC 379 (493)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (493)
+..|..+..+-.+.|...+|++-|-+. -|+..|..++....+.|.+++-.+.+...++..-.|.. =+.++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHH
Confidence 345666666666666666665544332 15556666666666777777666666665554333332 2456666
Q ss_pred HHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043480 380 LCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELA 459 (493)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 459 (493)
|++.+++.+-++++ .-||......+.+-|...|.++.|.-++.. ...|..|...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHH
Confidence 66666665544433 235655566666666666666666655543 33456666667777777766
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhchh
Q 043480 460 CRLWDQMMEKGFTLDKTVSAALIEAIHLQDA 490 (493)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 490 (493)
...-+++ .+..+|..+-.+|-..++
T Consensus 1240 VD~aRKA------ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1240 VDAARKA------NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred HHHhhhc------cchhHHHHHHHHHhchhh
Confidence 5554444 245677777777665544
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.01 E-value=2.6e-08 Score=85.33 Aligned_cols=146 Identities=21% Similarity=0.239 Sum_probs=61.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCCHh
Q 043480 312 KGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK----SREIG 387 (493)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 387 (493)
..|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.+ .| .+...+..++.. ...+.
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHH
Confidence 345555554444321 133344444445555555555555555554421 12 122222222211 12345
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 043480 388 TAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKL-ELACRLWDQM 466 (493)
Q Consensus 388 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 466 (493)
+|..+|+++.+. ..+++.+.+.+..++...|++++|..++++....+.. ++.++..++-+....|+. +.+.+.+.++
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 555555554433 3344444555555555555555555555554433211 344444444444444444 3344444444
Q ss_pred HH
Q 043480 467 ME 468 (493)
Q Consensus 467 ~~ 468 (493)
..
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.01 E-value=1e-05 Score=83.27 Aligned_cols=306 Identities=12% Similarity=-0.014 Sum_probs=193.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCC--C----CCCH--HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCC----hh
Q 043480 129 TIVIDGLCKAKEFDKAVQAWEHMIENG--I----KPDN--KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFG----VL 196 (493)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~ 196 (493)
......+...|+++++...+......- . .+.. .....+...+...|+++.|...++.........+ ..
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 344555667899999999998775431 0 1111 1222334455678999999999988776321112 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHccCChHHHHHHHHHHHH----CCCCC---C
Q 043480 197 IYNALISGFCRTGRIRRAMAIKSFMKWNGC---EPD--LVTYNAILNYYCDEVMLDEAEKLVMEMES----CGIEP---D 264 (493)
Q Consensus 197 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~---~ 264 (493)
..+.+...+...|++++|...+++.....- .+. ..+...+...+...|++++|...+++... .+... .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 345566677789999999999888764210 111 23445556677889999999998887653 22111 1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--C--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-CHhHH-
Q 043480 265 VYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGL--R--DKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIEL-DVVTF- 338 (493)
Q Consensus 265 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~- 338 (493)
...+..+...+...|++++|...+.+....... + ....+..+.......|+++.|.+.+.......... ....+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 223445556677789999999988877653111 1 22334445667778899999999988875421111 11111
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHccCCHhHHHHHHHHHHhC----CCCCC-Hh
Q 043480 339 ----TILIKAFLREGSSAMAEKLLNQMRGMNLSPD---RILYTTIIDCLCKSREIGTAYGVFLDMVEQ----GITPD-VI 406 (493)
Q Consensus 339 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~ 406 (493)
...+..+...|+.+.|...+........... ...+..+..++...|++++|...+++.... |..++ ..
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 1122344567899999988877654221111 112345677788899999999999888753 32222 23
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 407 SYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
+...+..++...|+.++|...+.+..+.
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5566677888999999999999998764
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.00 E-value=9.1e-06 Score=68.04 Aligned_cols=301 Identities=11% Similarity=0.021 Sum_probs=184.5
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhh-HHHHH
Q 043480 124 DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLI-YNALI 202 (493)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~ 202 (493)
++.-..-+...+...|++..|+.-|...++.+ +.+-.++..-...|...|+-.-|+.-+..+++. .||-.. --.-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 34444456667777888888888888877642 112334444455677778777777777777765 344221 12233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH----------------HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChh
Q 043480 203 SGFCRTGRIRRAMAIKSFMKWNGCEPDLV----------------TYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVY 266 (493)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 266 (493)
..+.+.|.++.|..=|+.+.+.. |+.. .....+..+...|+...++.....+.+.. +-+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 45677888888888888887663 2111 12233445566788888888888887754 45677
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHH----HH-
Q 043480 267 SYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFT----IL- 341 (493)
Q Consensus 267 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l- 341 (493)
.+..-..+|...|++..|+.-++........ +...+.-+-..+...|+.+.++...++..+. .||....- .+
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHH
Confidence 7777788888888888887777666554333 4455555666777788888888888877765 44443221 11
Q ss_pred --------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHH
Q 043480 342 --------IKAFLREGSSAMAEKLLNQMRGMNLSPDRI---LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNA 410 (493)
Q Consensus 342 --------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 410 (493)
+......+++.++.+-.+...+........ .+..+-.++...|.+.+|++.-.++++.. +.|..++..
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~d 346 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHH
Confidence 111233455666666666555543221122 23344445555666777777776666541 223566666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 043480 411 LINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
-..+|.-...++.|+.-|+...+.
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhc
Confidence 666666666777777777776664
No 106
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.97 E-value=1.9e-05 Score=73.07 Aligned_cols=376 Identities=15% Similarity=0.102 Sum_probs=190.7
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhh--------------------CCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQ--------------------SNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQ 68 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 68 (493)
...|..+.......|++--|.+.|..+-+ .| .....-|..-...-.-.+++.+|..+|-
T Consensus 477 ~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~g-gdgt~fykvra~lail~kkfk~ae~ifl 555 (1636)
T KOG3616|consen 477 EAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIG-GDGTDFYKVRAMLAILEKKFKEAEMIFL 555 (1636)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhC-CCCchHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34477777777777777777777654321 11 1112223322222223345666666654
Q ss_pred HhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHH-----HHHHHHHHHHHhCCC-------CCCHhhHHHHHHHHh
Q 043480 69 QMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMD-----KLALEVFHKMVSKGR-------EPDVVTYTIVIDGLC 136 (493)
Q Consensus 69 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~a~~~~~~~~~~g~-------~~~~~~~~~l~~~~~ 136 (493)
+-- .-...+..|....+|++++.+.+..- +.-...++.+...|. +.+.---.+.|..|.
T Consensus 556 eqn---------~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~sdgd~laaiqlyi 626 (1636)
T KOG3616|consen 556 EQN---------ATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKESDGDGLAAIQLYI 626 (1636)
T ss_pred hcc---------cHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccccCccHHHHHHHH
Confidence 321 11223445555566665554433211 111222232222221 111112234567788
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 043480 137 KAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMA 216 (493)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 216 (493)
+.|.+..|.+.-..-.+ +..|......+..++.+..-++.|-.+|+++... ...+.+|-+..-+.+|.+
T Consensus 627 ka~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgdaf~kaie 695 (1636)
T KOG3616|consen 627 KAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGDAFGKAIE 695 (1636)
T ss_pred HcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHcccHHHHHHH
Confidence 88887777654422111 2235555555555555555556665555555421 111222222222222222
Q ss_pred HHHHHH----------------HCCCCCCH--------HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 043480 217 IKSFMK----------------WNGCEPDL--------VTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLL 272 (493)
Q Consensus 217 ~~~~~~----------------~~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 272 (493)
+-+-.- ..| ..|. ...-..+.+......|.+|+.+++.+.... .-..-|..+.
T Consensus 696 larfafp~evv~lee~wg~hl~~~~-q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~ia 772 (1636)
T KOG3616|consen 696 LARFAFPEEVVKLEEAWGDHLEQIG-QLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIA 772 (1636)
T ss_pred HHHhhCcHHHhhHHHHHhHHHHHHH-hHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHH
Confidence 211110 000 0000 011122334445667777888877776543 2334566677
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHH
Q 043480 273 KGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSA 352 (493)
Q Consensus 273 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 352 (493)
+.|...|+++.|.++|.+.- .++-.|.+|.+.|+++.|.++-++.. |.......|..-..-.-..|.+.
T Consensus 773 dhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~ 841 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFA 841 (1636)
T ss_pred HHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchh
Confidence 88888888888888775432 24556778888888888887766553 33445555666666666778887
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043480 353 MAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEM 431 (493)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 431 (493)
+|++++-.+. .|+ ..|..|-+.|..+...++..+-... .-..|...+..-+-..|+...|...|-+.
T Consensus 842 eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 842 EAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 7777764443 344 2355666777777666665543211 11233444555555666666666555443
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.94 E-value=7.6e-07 Score=87.44 Aligned_cols=244 Identities=10% Similarity=0.024 Sum_probs=162.5
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC-CCCc---ChhhHHHHHHHHhccCChhhHHHHH
Q 043480 27 QAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL-GFSL---TPFTYSRFISGLCEVKNFTLINILL 102 (493)
Q Consensus 27 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~ 102 (493)
.|.++ ++....+ |.+...|...+......++.++|+++.++++.. ++.. -...|.++++.--.-|.-
T Consensus 1443 saeDf-erlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~e------- 1513 (1710)
T KOG1070|consen 1443 SAEDF-ERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTE------- 1513 (1710)
T ss_pred CHHHH-HHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcH-------
Confidence 44443 3444433 667777888888888888888888888887764 1111 123455666555555543
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHH
Q 043480 103 DNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYEL 182 (493)
Q Consensus 103 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 182 (493)
+...++|+++.+. -..-..|..|...|.+.+.+++|.++|+.|.+. +......|...+..+.++++-+.|..+
T Consensus 1514 ----esl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~l 1586 (1710)
T KOG1070|consen 1514 ----ESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAAREL 1586 (1710)
T ss_pred ----HHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHH
Confidence 4566777777664 223456777888888888888888888888764 234667788888888888888888888
Q ss_pred HHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 043480 183 TVGAMKGKVE-FGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGI 261 (493)
Q Consensus 183 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 261 (493)
+.+.++.-.. -........+..-.+.|+.+.+..+|+...... |-....|+..++.-.+.|+.+.+..+|++....++
T Consensus 1587 L~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1587 LKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 8877765211 123344455555667788888888888877653 44567788888888888888888888888887776
Q ss_pred CCCh--hhHHHHHHHHHccCCHHHHHHH
Q 043480 262 EPDV--YSYNQLLKGLCNSNQLDKAYMF 287 (493)
Q Consensus 262 ~~~~--~~~~~l~~~~~~~~~~~~a~~~ 287 (493)
.|.. ..|...+..--+.|+-..+..+
T Consensus 1666 ~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1666 SIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred ChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 6543 4556666555555665544433
No 108
>PLN02789 farnesyltranstransferase
Probab=98.93 E-value=1.7e-06 Score=75.32 Aligned_cols=218 Identities=9% Similarity=-0.003 Sum_probs=149.6
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHhccCCCCcChhhHHHHHHH
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHS-RFDLVQFYYQQMHPLGFSLTPFTYSRFISG 88 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 88 (493)
.++..+-..+...+..++|+.+++.+++.+ |.+..+|+....++...| ++++++..++++++.+ +.+..+|+.....
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 445556666777889999999999999987 667778888877888887 5799999999998875 4555567665555
Q ss_pred HhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 043480 89 LCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVV 168 (493)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 168 (493)
+.+.+.... +.++..++++.+. .+-+..+|+....++...|+++++++.++++++.+.. +..+|+....
T Consensus 116 l~~l~~~~~---------~~el~~~~kal~~-dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~ 184 (320)
T PLN02789 116 AEKLGPDAA---------NKELEFTRKILSL-DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYF 184 (320)
T ss_pred HHHcCchhh---------HHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHH
Confidence 555554210 3457777788775 3457888999888888999999999999999987643 6677776665
Q ss_pred HHhcc---Cch----hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043480 169 GLCGD---GKV----DLAYELTVGAMKGKVEFGVLIYNALISGFCRT----GRIRRAMAIKSFMKWNGCEPDLVTYNAIL 237 (493)
Q Consensus 169 ~~~~~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 237 (493)
.+... |.. +...+...+.+... +-+...|+-+...+... +...+|.+.+.+....+ +.+......++
T Consensus 185 vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~ 262 (320)
T PLN02789 185 VITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLL 262 (320)
T ss_pred HHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHH
Confidence 55443 222 34555555555544 45667777666666652 23455666666655543 44555566666
Q ss_pred HHHHc
Q 043480 238 NYYCD 242 (493)
Q Consensus 238 ~~~~~ 242 (493)
..|+.
T Consensus 263 d~~~~ 267 (320)
T PLN02789 263 DLLCE 267 (320)
T ss_pred HHHHh
Confidence 66654
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.92 E-value=2.2e-06 Score=84.29 Aligned_cols=238 Identities=9% Similarity=0.034 Sum_probs=182.0
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC-CCC---CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhh
Q 043480 227 EPDLVTYNAILNYYCDEVMLDEAEKLVMEMESC-GIE---PDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVS 302 (493)
Q Consensus 227 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 302 (493)
|.+...|-..|......++.++|.++.++++.. ++. --...|.++++.-...|.-+...++|+++.+... ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHHH
Confidence 556677888888888999999999999888743 111 1235677788777777888888888888877521 2345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHH
Q 043480 303 YNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNL-SPDRILYTTIIDCLC 381 (493)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 381 (493)
|..|...|.+.+..++|.++++.|.+. .......|...+..+.+..+-+.|..++.+..+.-. ..........+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 788888899999999999999999877 335777888889999999888999999988886421 123455666677778
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 043480 382 KSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD--EVTFKLLIGGLVQEKKLELA 459 (493)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a 459 (493)
+.|+.+++..+|+..+.. .+--...|+.+++.-.++|+.+.++.+|++....++.|- -..|...+..--..|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 889999999999988876 344567899999999999999999999999998888774 45667777766677887766
Q ss_pred HHHHHHHHH
Q 043480 460 CRLWDQMME 468 (493)
Q Consensus 460 ~~~~~~~~~ 468 (493)
..+=.++.+
T Consensus 1691 E~VKarA~E 1699 (1710)
T KOG1070|consen 1691 EYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHH
Confidence 666555543
No 110
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.90 E-value=6.8e-05 Score=71.05 Aligned_cols=208 Identities=12% Similarity=0.085 Sum_probs=138.2
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhH
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTY 82 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (493)
+++|..+.+-..=+-...+.|+.++|..+++.....+ +.|..+...+-.+|.+.++.++|..+|++.... .|+....
T Consensus 37 kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell 113 (932)
T KOG2053|consen 37 KKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELL 113 (932)
T ss_pred HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHH
Confidence 3444444443333445678899999999998877665 557888888889999999999999999999876 4667777
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC-C---------HHHHHHHHHHHH
Q 043480 83 SRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAK-E---------FDKAVQAWEHMI 152 (493)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~-~---------~~~a~~~~~~~~ 152 (493)
..+..+|.+.+++..-. +.|++++.. .+.+...|-+++..+...- . ..-|.+.++.+.
T Consensus 114 ~~lFmayvR~~~yk~qQ-------kaa~~LyK~-----~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l 181 (932)
T KOG2053|consen 114 YHLFMAYVREKSYKKQQ-------KAALQLYKN-----FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLL 181 (932)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHh-----CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHh
Confidence 78888888888775443 556666652 3445555555665554321 1 224556666666
Q ss_pred HCC-CCCCHHhHHHHHHHHhccCchhHHHHHHH-HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043480 153 ENG-IKPDNKACAALVVGLCGDGKVDLAYELTV-GAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNG 225 (493)
Q Consensus 153 ~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 225 (493)
+.+ ..-+..-...-...+...|++++|.+++. ...+.....+...-+.-+..+...++|.+..++-.++...|
T Consensus 182 ~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 182 EKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred ccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 553 11122222222334556788999999984 33333334444555567788888999999999998888875
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=1.2e-06 Score=80.39 Aligned_cols=232 Identities=13% Similarity=0.056 Sum_probs=176.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 043480 232 TYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFC 311 (493)
Q Consensus 232 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (493)
.-..+...+.+.|-...|..++++.. .|..++.+|...|+.++|..+..+..+ ..|++..|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence 33456667778888888888888764 466678889999999999888877776 3468888888877776
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHH
Q 043480 312 KGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYG 391 (493)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 391 (493)
...-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-....+..+.++++.|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 666677888877765432 11122222334789999999998887765 5677788888888899999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 043480 392 VFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGF 471 (493)
Q Consensus 392 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 471 (493)
.|....... +-+...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+-...+.|.+++|.+.+.++.....
T Consensus 541 aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 541 AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 999988752 3356789999999999999999999999999887 44788888888899999999999999999887521
Q ss_pred -CCCHHHHHHHHHH
Q 043480 472 -TLDKTVSAALIEA 484 (493)
Q Consensus 472 -~~~~~~~~~ll~~ 484 (493)
..|..+...++..
T Consensus 619 ~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 619 KYKDDEVLLIIVRT 632 (777)
T ss_pred hcccchhhHHHHHH
Confidence 1244444444443
No 112
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=1.4e-05 Score=74.67 Aligned_cols=267 Identities=13% Similarity=0.108 Sum_probs=165.0
Q ss_pred ChhhHHHHHH--HHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHH-HHHHHHHHHHHhC
Q 043480 43 FSIDYNRFIG--VLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMD-KLALEVFHKMVSK 119 (493)
Q Consensus 43 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~a~~~~~~~~~~ 119 (493)
|..+-..++. .|..-|+.+.|.+-.+-+. +...|..+.+.|.+..+.+-|.-.+..+. ....+.+++..+.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4555555653 4667788888877776653 23468888888888888877776666664 2234455555554
Q ss_pred CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHH
Q 043480 120 GREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYN 199 (493)
Q Consensus 120 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 199 (493)
|. ..=..+.-.....|.+++|+.+|.+-... ..|=..|-..|.|++|.++-+.--.. .-..+|.
T Consensus 799 ~~----e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy 862 (1416)
T KOG3617|consen 799 GE----EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYY 862 (1416)
T ss_pred Cc----chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHH
Confidence 32 11122233345679999999999988764 22334566789999998875432221 1234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 043480 200 ALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSN 279 (493)
Q Consensus 200 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 279 (493)
....-+...++.+.|++.|++.. .|-...+..|. .++...+.+.+.+ .|...|..........|
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~----~hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~G 926 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAG----VHAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVG 926 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcC----ChHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhccc
Confidence 66667777889999999998764 22222222222 1233333333333 34456666666667788
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 043480 280 QLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLN 359 (493)
Q Consensus 280 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 359 (493)
+++.|+.++..+.+ |-.++...|-.|+.++|-++-++-. |....-.+.+.|-..|++.+|...|.
T Consensus 927 emdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 927 EMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred chHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 88888887766654 4555666666777777766655432 44555566677777777777777766
Q ss_pred HHH
Q 043480 360 QMR 362 (493)
Q Consensus 360 ~~~ 362 (493)
+.+
T Consensus 992 rAq 994 (1416)
T KOG3617|consen 992 RAQ 994 (1416)
T ss_pred HHH
Confidence 554
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.86 E-value=3.8e-07 Score=73.37 Aligned_cols=166 Identities=16% Similarity=0.034 Sum_probs=102.1
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCC
Q 043480 41 RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKG 120 (493)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g 120 (493)
|-|..+ ...-..+...|+-+.+..+........ +.+.......+....+.|++ ..|...|++....
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~-----------~~A~~~~rkA~~l- 129 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNF-----------GEAVSVLRKAARL- 129 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcch-----------HHHHHHHHHHhcc-
Confidence 334444 445556666666666666665543321 34444555566666677777 5555666666554
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHH
Q 043480 121 REPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNA 200 (493)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (493)
-++|...|+.+.-+|.+.|+++.|..-|.+..+.. .-+...++.+...+.-.|+.+.|..++......+ ..+..+-..
T Consensus 130 ~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~N 207 (257)
T COG5010 130 APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQN 207 (257)
T ss_pred CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHH
Confidence 45566677777777777777777777777666642 2244566666666677777777777776666553 335556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 043480 201 LISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 201 l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
+.......|+++.|.++...-.
T Consensus 208 LAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 208 LALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHhhcCChHHHHhhccccc
Confidence 6666777777777776655544
No 114
>PLN02789 farnesyltranstransferase
Probab=98.85 E-value=1.3e-05 Score=69.94 Aligned_cols=217 Identities=9% Similarity=0.000 Sum_probs=111.0
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH--HHHH
Q 043480 244 VMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSN-QLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQT--RRAY 320 (493)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~ 320 (493)
+..++|+.+...+.+.. +-+..+|+....++...| ++++++..+.++....+. +..+|+.....+.+.|.. ++++
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHH
Confidence 34444555554444422 112223333333333334 345555555555554332 333444333333333332 4455
Q ss_pred HHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc---CC----HhHHHHHH
Q 043480 321 KLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKS---RE----IGTAYGVF 393 (493)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~----~~~a~~~~ 393 (493)
..++.+.+...+ +..+|+....++...|+++++++.++.+.+.+ +.+...|+.....+.+. |. .++.....
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 566565555332 55566666666666666666666666666654 34445555544444333 21 23455555
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhc----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---------------
Q 043480 394 LDMVEQGITPDVISYNALINGLCKS----SRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEK--------------- 454 (493)
Q Consensus 394 ~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------------- 454 (493)
.+++... +-|...|+.+...+... ++..+|...+.+..+.++. +...+..|++.|+...
T Consensus 207 ~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~ 284 (320)
T PLN02789 207 IDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDTLAE 284 (320)
T ss_pred HHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence 5655542 33556666666666552 3345566666666553322 5666777777776532
Q ss_pred ---CHHHHHHHHHHH
Q 043480 455 ---KLELACRLWDQM 466 (493)
Q Consensus 455 ---~~~~a~~~~~~~ 466 (493)
..++|.++++.+
T Consensus 285 ~~~~~~~a~~~~~~l 299 (320)
T PLN02789 285 ELSDSTLAQAVCSEL 299 (320)
T ss_pred ccccHHHHHHHHHHH
Confidence 236677777777
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.84 E-value=6.4e-07 Score=75.78 Aligned_cols=186 Identities=9% Similarity=-0.023 Sum_probs=123.0
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChh--
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS---IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPF-- 80 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 80 (493)
+..+..+..++..+...|++++|...|+++.... |.++ ..+..+..++...|++++|...++++.+... .++.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchH
Confidence 4566778889999999999999999999998865 3333 4677788999999999999999999987642 1222
Q ss_pred -hHHHHHHHHhcc--------CChhhHHHHHHHHHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHH
Q 043480 81 -TYSRFISGLCEV--------KNFTLINILLDNMDKLALEVFHKMVSKGREPD-VVTYTIVIDGLCKAKEFDKAVQAWEH 150 (493)
Q Consensus 81 -~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 150 (493)
++..+..++... |+. +.|.+.|+.+... .|+ ...+..+..... ... .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~-----------~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~ 164 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAA-----------REAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------R 164 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHH-----------HHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------H
Confidence 344444444433 334 6677888887764 333 223322221100 000 0
Q ss_pred HHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043480 151 MIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKV--EFGVLIYNALISGFCRTGRIRRAMAIKSFMKWN 224 (493)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (493)
.. .....+...+...|+++.|...+....+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 165 ~~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 165 LA--------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 00 1112455567778888888888888776531 223467778888888888888888888877654
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.84 E-value=1.9e-06 Score=69.71 Aligned_cols=125 Identities=10% Similarity=0.147 Sum_probs=90.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HhcCC--hhHH
Q 043480 348 EGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGL-CKSSR--VSEA 424 (493)
Q Consensus 348 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~a 424 (493)
.++.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 556667777777766655 6777788888888888888888888888888763 33566777777654 56666 4788
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043480 425 MHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKT 476 (493)
Q Consensus 425 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 476 (493)
.+++++..+.+.. +...+..+...+...|++++|...|+++++. .+|+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~ 179 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVN 179 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCcc
Confidence 8888888775433 6777888888888888888888888888775 344443
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=9.2e-06 Score=74.93 Aligned_cols=220 Identities=14% Similarity=0.090 Sum_probs=169.6
Q ss_pred CCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043480 158 PDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAIL 237 (493)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 237 (493)
|-...-..+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+..++ +|++.-|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333344556677788888899998888764 4667888899999999999888888774 88888888888
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHH
Q 043480 238 NYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTR 317 (493)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 317 (493)
+......-+++|.++.+..-.. .-..+.....+.+++.++.+.|+......+. ...+|-.+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhH
Confidence 8777777777787777664321 1122233344578899999999888876554 6677888888888899999
Q ss_pred HHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHH
Q 043480 318 RAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMV 397 (493)
Q Consensus 318 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 397 (493)
.|.+.|....... +-+...|+.+-.+|.+.++..+|...+.+..+.+ ..+...|...+....+.|.+++|.+.+.++.
T Consensus 537 ~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9999998887652 2356789999999999999999999999999877 5666777777777888999999999998887
Q ss_pred h
Q 043480 398 E 398 (493)
Q Consensus 398 ~ 398 (493)
+
T Consensus 615 ~ 615 (777)
T KOG1128|consen 615 D 615 (777)
T ss_pred H
Confidence 4
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.76 E-value=9.8e-06 Score=78.94 Aligned_cols=242 Identities=10% Similarity=0.078 Sum_probs=140.8
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
.|.+..++..|+..|...|++++|.++.+...+.. |.....|..++..+...+++.++..+ .+..
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------ 91 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLID------------ 91 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhh------------
Confidence 45677788888999989999999999998877764 44455555555567777776555554 2222
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACA 164 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 164 (493)
......++ .....+...+.. ..-+..++-.+..+|-+.|+.++|.++|+++++.. +-|..+.+
T Consensus 92 ---~~~~~~~~-----------~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLN 154 (906)
T PRK14720 92 ---SFSQNLKW-----------AIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVK 154 (906)
T ss_pred ---hcccccch-----------hHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHH
Confidence 22222222 111122222222 22244467778888888888888888888888876 34677888
Q ss_pred HHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 043480 165 ALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEV 244 (493)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 244 (493)
.+...|... ++++|.+++.++... +...+++..+.+++.++.... +.+...+..+++.....-
T Consensus 155 n~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHR 217 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhh
Confidence 888888877 888888877766542 555667777777777776542 222222222222111110
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 043480 245 MLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFC 311 (493)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (493)
|...-..++-.+-..|-..++++++..++..+++..+. |.....-++.+|.
T Consensus 218 ---------------~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 ---------------EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ---------------ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11122233334444555555666666666666655443 4444444444443
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=2.7e-05 Score=63.00 Aligned_cols=137 Identities=21% Similarity=0.226 Sum_probs=63.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----c
Q 043480 308 EAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK----S 383 (493)
Q Consensus 308 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 383 (493)
..|+..|++++|++..+... +......=+..+.+..+.+.|...++.|.+. .+..+.+.|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 34455555555555554411 1122222223334444555555555555542 233444444444432 2
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043480 384 REIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKK 455 (493)
Q Consensus 384 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 455 (493)
+.+.+|.-+|++|.++ .+|+..+.+....++...|++++|..+++........ ++.+...++-.-...|+
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGK 256 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCC
Confidence 2355555555555543 3455555555555555555555555555555544322 44444444443333443
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.73 E-value=7.7e-06 Score=66.05 Aligned_cols=157 Identities=14% Similarity=0.044 Sum_probs=89.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 043480 306 VIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSRE 385 (493)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 385 (493)
+-..+...|+-+....+....... .+.|.......+....+.|++..|...+.+..... ++|...|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 334444455555555554443322 12244444445566666666666666666666554 5666666666666666666
Q ss_pred HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043480 386 IGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQ 465 (493)
Q Consensus 386 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 465 (493)
++.|..-|.+..+.. .-+...++.+.-.+.-.|+.+.|..++......+.. |..+-..+..+....|++++|..+...
T Consensus 150 ~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 150 FDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 666666666666541 223445566666666666666666666666554222 555555666666666666666655444
Q ss_pred H
Q 043480 466 M 466 (493)
Q Consensus 466 ~ 466 (493)
-
T Consensus 228 e 228 (257)
T COG5010 228 E 228 (257)
T ss_pred c
Confidence 3
No 121
>PF12854 PPR_1: PPR repeat
Probab=98.71 E-value=2.1e-08 Score=54.17 Aligned_cols=31 Identities=35% Similarity=0.663 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 436 AHPDEVTFKLLIGGLVQEKKLELACRLWDQM 466 (493)
Q Consensus 436 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 466 (493)
+.||..+|++||++|++.|++++|.+++++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3344444444444444444444444444433
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=4e-05 Score=62.02 Aligned_cols=87 Identities=10% Similarity=0.055 Sum_probs=40.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 043480 205 FCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYC----DEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQ 280 (493)
Q Consensus 205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 280 (493)
+.+..+++-|.+.+++|.+-. +..|.+.|..++. ..+.+.+|.-+|++|.+. .+|++.+.+....++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 344444555555555554321 3333333333332 233444555555555432 23555555555555555555
Q ss_pred HHHHHHHHHHHHHcC
Q 043480 281 LDKAYMFMVKKMEAK 295 (493)
Q Consensus 281 ~~~a~~~~~~~~~~~ 295 (493)
+++|..+++..+...
T Consensus 223 ~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 223 YEEAESLLEEALDKD 237 (299)
T ss_pred HHHHHHHHHHHHhcc
Confidence 555555555555443
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.70 E-value=6.4e-06 Score=69.68 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=41.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 410 ALINGLCKSSRVSEAMHLYEEMQIRGA-HP-DEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 410 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.+...+...|++.+|...+++..+... .| ....+..+..++...|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445567777888888888877766422 12 3567777778888888888888877777543
No 124
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.70 E-value=0.00021 Score=64.03 Aligned_cols=173 Identities=13% Similarity=0.120 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHH
Q 043480 316 TRRAYKLFEGMRRRGIELDVVTFTILIKAFLREG---SSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGV 392 (493)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 392 (493)
.+++..+++.....-..-+..+|..+...--..- ..+....+++++.......-..+|-.+++.-.+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3456666666554422223344444433222222 2556667777776533233345677888888888889999999
Q ss_pred HHHHHhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 043480 393 FLDMVEQGITP-DVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGF 471 (493)
Q Consensus 393 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 471 (493)
|.++.+.+..+ .+.++++++.-++ .+|.+-|.++|+--.+. +.-++.--...++-+...++-..|..+|++.+..++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999887777 6677778887555 67889999999987765 333455556788889999999999999999999866
Q ss_pred CCCH--HHHHHHHHHHhhchh
Q 043480 472 TLDK--TVSAALIEAIHLQDA 490 (493)
Q Consensus 472 ~~~~--~~~~~ll~~~~~~~~ 490 (493)
.+|. .+|...+.-=..-|+
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred ChhhhHHHHHHHHHHHHhccc
Confidence 6654 778877765444443
No 125
>PF12854 PPR_1: PPR repeat
Probab=98.69 E-value=3.5e-08 Score=53.34 Aligned_cols=33 Identities=55% Similarity=1.097 Sum_probs=31.4
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043480 399 QGITPDVISYNALINGLCKSSRVSEAMHLYEEM 431 (493)
Q Consensus 399 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 431 (493)
+|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 478999999999999999999999999999986
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=9.4e-07 Score=71.52 Aligned_cols=156 Identities=8% Similarity=-0.003 Sum_probs=104.9
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCCh
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNF 95 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 95 (493)
+..|..-|+++......+.+... .. .+...++.+++...++..++.+ +.+...|..+...+...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~---~~---------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP---LH---------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc---cc---------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 46678888887765554333211 10 1112566677777777777665 66777888888888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HhccCC--HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc
Q 043480 96 TLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDG-LCKAKE--FDKAVQAWEHMIENGIKPDNKACAALVVGLCG 172 (493)
Q Consensus 96 ~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (493)
+.|...+++.... .+.+...+..+..+ +...|+ .++|.+++++..+.+. -+..++..+...+..
T Consensus 90 -----------~~A~~a~~~Al~l-~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~ 156 (198)
T PRK10370 90 -----------DNALLAYRQALQL-RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFM 156 (198)
T ss_pred -----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHH
Confidence 5666777777765 34466677777765 356666 4888888888887642 256777778888888
Q ss_pred cCchhHHHHHHHHHHhCCCCCChhhH
Q 043480 173 DGKVDLAYELTVGAMKGKVEFGVLIY 198 (493)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~ 198 (493)
.|++++|...|+.+.+.. +|+..-+
T Consensus 157 ~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 157 QADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 888888888888887765 4444433
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.67 E-value=4e-06 Score=64.14 Aligned_cols=91 Identities=10% Similarity=-0.121 Sum_probs=42.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043480 341 LIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR 420 (493)
Q Consensus 341 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (493)
....+...|++++|...|+...... +.+...|..+..++...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3344444455555555544444433 3344444444444444455555555555444432 2233444444444444455
Q ss_pred hhHHHHHHHHHHH
Q 043480 421 VSEAMHLYEEMQI 433 (493)
Q Consensus 421 ~~~a~~~~~~~~~ 433 (493)
+++|+..|+...+
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544444
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.67 E-value=1.2e-06 Score=66.90 Aligned_cols=109 Identities=15% Similarity=0.007 Sum_probs=90.8
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
+|..+..+...+...|++++|...|+.+...+ |.+...|..+..++...|++++|...|++....+ +.++..+..+..
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~ 100 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGV 100 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 44456678899999999999999999999987 7789999999999999999999999999999876 667888999999
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTI 130 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 130 (493)
++...|++ +.|+..|+..... .+.+...|..
T Consensus 101 ~l~~~g~~-----------~eAi~~~~~Al~~-~p~~~~~~~~ 131 (144)
T PRK15359 101 CLKMMGEP-----------GLAREAFQTAIKM-SYADASWSEI 131 (144)
T ss_pred HHHHcCCH-----------HHHHHHHHHHHHh-CCCChHHHHH
Confidence 99999999 6677777877774 2334444433
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.66 E-value=4.5e-05 Score=74.51 Aligned_cols=238 Identities=11% Similarity=0.060 Sum_probs=153.8
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHH
Q 043480 123 PDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN-KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNAL 201 (493)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (493)
.+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+...++.+.+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 35667888888888888999999888877665 3443 3344444455555554444333 33
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH
Q 043480 202 ISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQL 281 (493)
Q Consensus 202 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 281 (493)
+.......++.-+..+...+... .-+...+..+..+|.+.|+.+++..+++++.+.. +.++.+.+.+...|... ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 44444455554445555555543 3344567777888888888888888888888776 56777888888888877 88
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043480 282 DKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQM 361 (493)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 361 (493)
++|..++.++... +...+++..+.++|.++....+. +...+..+.+ .+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~----------------ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIER----------------KV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHH----------------HH
Confidence 8888877776553 55566788888888888876221 2222222222 22
Q ss_pred HhC-CCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 043480 362 RGM-NLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLC 416 (493)
Q Consensus 362 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 416 (493)
... +..--..++-.+...|-..++++++..+++.+++.. +-|......++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 211 122334455566667777888888888888888763 335566666777665
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=5.7e-05 Score=60.71 Aligned_cols=189 Identities=14% Similarity=0.100 Sum_probs=122.5
Q ss_pred ccCChHHHHHHHHHHHH---CC-CCCChh-hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH
Q 043480 242 DEVMLDEAEKLVMEMES---CG-IEPDVY-SYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQT 316 (493)
Q Consensus 242 ~~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 316 (493)
...+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++......+. +...-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhch
Confidence 35567788888877753 23 344433 3445555666778888888888777766532 222222222233446788
Q ss_pred HHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHH
Q 043480 317 RRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDM 396 (493)
Q Consensus 317 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 396 (493)
++|+++|+.+.+.+ +.|..++..-+...-..|..-+|++-+....+.- ..|...|..+...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888888765 3466666666666666777777777777766543 677888888888888888888888888887
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcC---ChhHHHHHHHHHHHc
Q 043480 397 VEQGITPDVISYNALINGLCKSS---RVSEAMHLYEEMQIR 434 (493)
Q Consensus 397 ~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~ 434 (493)
+-.. |.++..+..+...+.-.| +...+.+++.+..+.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 7542 334455555655554433 556677778777764
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.63 E-value=4.2e-05 Score=73.85 Aligned_cols=132 Identities=10% Similarity=0.037 Sum_probs=65.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 043480 299 DKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIID 378 (493)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 378 (493)
+...+..|.....+.|.+++|+.+++...+.. +-+......+...+.+.+.+++|....++..... +.+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 34444555555555555555555555555431 1123334444455555555555555555555443 344444455555
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 379 CLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555421 22244455555555555555555555555544
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.60 E-value=5.2e-05 Score=73.22 Aligned_cols=147 Identities=12% Similarity=0.022 Sum_probs=110.5
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHH
Q 043480 121 REPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD-NKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYN 199 (493)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 199 (493)
.+.+...+-.|.....+.|.+++|..+++...+. .|+ ......+...+.+.+++++|....+...... +.+.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 4556778888888888888888888888888876 444 5667777888888888888888888888765 44666777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 043480 200 ALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLL 272 (493)
Q Consensus 200 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 272 (493)
.+..++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|+...+.- .+....|+..+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 77788888888888888888888743 4457778888888888888888888888877542 24444444443
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=0.00038 Score=61.76 Aligned_cols=159 Identities=15% Similarity=0.098 Sum_probs=121.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHh
Q 043480 308 EAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIG 387 (493)
Q Consensus 308 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 387 (493)
..+...|++++|+..++.+.+. .+-|+.........+...++..+|.+.++.+.... +......-.+..++.+.|++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChH
Confidence 3455678999999999998877 33466666777888899999999999999998764 333677778888999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 388 TAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 388 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 467 (493)
+|..++++.... .+-|+..|..|..+|...|+..++..-..+ .+...|+++.|...+..+.
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHH
Confidence 999999998876 466788999999999999988887764443 4667788899998888888
Q ss_pred HcC--CCCCHHHHHHHHHHHhh
Q 043480 468 EKG--FTLDKTVSAALIEAIHL 487 (493)
Q Consensus 468 ~~~--~~~~~~~~~~ll~~~~~ 487 (493)
+.. ..|+..-+...+.....
T Consensus 453 ~~~~~~~~~~aR~dari~~~~~ 474 (484)
T COG4783 453 QQVKLGFPDWARADARIDQLRQ 474 (484)
T ss_pred HhccCCcHHHHHHHHHHHHHHH
Confidence 762 23444444455554443
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.57 E-value=1.7e-06 Score=66.00 Aligned_cols=111 Identities=15% Similarity=0.068 Sum_probs=91.8
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhH
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTY 82 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (493)
...|.+......++..+...|++++|.+.|+.+...+ +.+...|..+...+...|++++|...+++.++.+ +.+...+
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~ 88 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPY 88 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHH
Confidence 4456677788889999999999999999999998876 6788889999999999999999999999998775 5567778
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhH
Q 043480 83 SRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTY 128 (493)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 128 (493)
..+..++...|++ +.|...|+...+. .|+...+
T Consensus 89 ~~la~~~~~~g~~-----------~~A~~~~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 89 FHAAECLLALGEP-----------ESALKALDLAIEI--CGENPEY 121 (135)
T ss_pred HHHHHHHHHcCCH-----------HHHHHHHHHHHHh--ccccchH
Confidence 8888899999999 6666777777764 3444443
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.56 E-value=5.5e-06 Score=63.12 Aligned_cols=98 Identities=13% Similarity=0.009 Sum_probs=58.6
Q ss_pred HHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043480 370 RILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGG 449 (493)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 449 (493)
......+...+...|++++|...++.+.+.+ +.+...+..+..++...|++++|...+++..+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3444455555566666666666666665542 3345556666666666666666666666665542 2245556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 043480 450 LVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~ 469 (493)
+...|++++|...+++.++.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666653
No 136
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.55 E-value=0.00048 Score=60.38 Aligned_cols=462 Identities=13% Similarity=0.063 Sum_probs=260.6
Q ss_pred CccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChh
Q 043480 1 MIQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPF 80 (493)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (493)
.|+..|.|...|..|++-|..+|..++.+++++++...- |.-+.+|...+.+-....++.....+|.+.+... .+..
T Consensus 34 rIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ld 110 (660)
T COG5107 34 RIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLD 110 (660)
T ss_pred HhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHh
Confidence 377889999999999999999999999999999998753 5556678888888888899999999999998874 4566
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHh-CCCCCC-HhhHHHHHHHHh---------ccCCHHHHHHHHH
Q 043480 81 TYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVS-KGREPD-VVTYTIVIDGLC---------KAKEFDKAVQAWE 149 (493)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~-~g~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~ 149 (493)
.|...+....+.+..-....- ....++|+-... .++.|- ...|+..+..+- .+.+.+...+.|.
T Consensus 111 LW~lYl~YIRr~n~~~tGq~r-----~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 111 LWMLYLEYIRRVNNLITGQKR-----FKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred HHHHHHHHHHhhCcccccchh-----hhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 676666655444322111000 122233333332 234443 334544443221 2334666777888
Q ss_pred HHHHCCCCCCHHhHH------HHH-----HHHh--ccCchhHHHHHHHHHHh--CCC----CCChhhHHH----------
Q 043480 150 HMIENGIKPDNKACA------ALV-----VGLC--GDGKVDLAYELTVGAMK--GKV----EFGVLIYNA---------- 200 (493)
Q Consensus 150 ~~~~~~~~~~~~~~~------~l~-----~~~~--~~~~~~~a~~~~~~~~~--~~~----~~~~~~~~~---------- 200 (493)
+++...+..=...|. .=+ +-+. ..--+-.|...++++.. .|+ +.+..+++.
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 887643221111111 111 1111 11123456666665543 221 122233332
Q ss_pred -HHHHHHhcC-----C-H-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 043480 201 -LISGFCRTG-----R-I-RRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLL 272 (493)
Q Consensus 201 -l~~~~~~~~-----~-~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 272 (493)
.|..-..++ + . ....-++++...- +.-....|----..+...++-+.|....+. |++..+..-..+.
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~spsL~~~ls 340 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEMSPSLTMFLS 340 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccCCCchheeHH
Confidence 222211111 0 0 0111111111110 011222222222223344555555555443 3332222222333
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcC
Q 043480 273 KGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCK---GGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREG 349 (493)
Q Consensus 273 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 349 (493)
..|.-..+-+.....|++..+. ...--.++.+-+. .|+++.--+++-+-+. .=...|...+.+..+..
T Consensus 341 e~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~~ 411 (660)
T COG5107 341 EYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRKR 411 (660)
T ss_pred HHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHHh
Confidence 4444455555555555554431 0000001111111 1233222222211111 13456777888888888
Q ss_pred CHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHhcCChhHHHHH
Q 043480 350 SSAMAEKLLNQMRGMN-LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVIS-YNALINGLCKSSRVSEAMHL 427 (493)
Q Consensus 350 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~ 427 (493)
..+.|..+|.+..+.+ +.+++.++++++..++ .|+...|..+|+--+.. -||... -+..+.-+...++-+.|..+
T Consensus 412 Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraL 488 (660)
T COG5107 412 GLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARAL 488 (660)
T ss_pred hHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHH
Confidence 8999999999999887 5677888889888766 57888999999876654 344433 35566777788999999999
Q ss_pred HHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhchh
Q 043480 428 YEEMQIRGAHPD--EVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDA 490 (493)
Q Consensus 428 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 490 (493)
|+..+.. +..+ ..+|..+|.--..-|+...+..+-++|.+. .|...+...+.+-|...++
T Consensus 489 Fetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ik~d 550 (660)
T COG5107 489 FETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYAIKAD 550 (660)
T ss_pred HHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHhhhcc
Confidence 9976543 2223 678999999889999999999998888864 6666677666666665544
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=0.0001 Score=59.30 Aligned_cols=115 Identities=15% Similarity=0.104 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHH
Q 043480 107 KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGA 186 (493)
Q Consensus 107 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 186 (493)
+.|.++++.+++.+ |.|..++-.-+...-..|+.-+|++-+....+. +..|...|..+...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 44555555555542 344455554444444555555555555555543 3445566666666666666666666666655
Q ss_pred HhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 043480 187 MKGKVEFGVLIYNALISGFCRTG---RIRRAMAIKSFMKWN 224 (493)
Q Consensus 187 ~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 224 (493)
+-.. |.+...+..+...+.-.| +.+.+.++|.+..+.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5443 333444444444333322 345566666666654
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=0.00021 Score=63.24 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHhccCchhHHHHHHHH
Q 043480 107 KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD-NKACAALVVGLCGDGKVDLAYELTVG 185 (493)
Q Consensus 107 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 185 (493)
+.|+..++.++.. .+.|+..+......+.+.|+..+|.+.++++... .|+ ......+..++.+.|+..+|+.+++.
T Consensus 323 d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~ 399 (484)
T COG4783 323 DEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNR 399 (484)
T ss_pred chHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 4445555555553 3344445555556666666666666666666654 344 33444555666666666666666666
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 043480 186 AMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMES 258 (493)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (493)
..... +-++..|..|..+|...|+..++..-..+. +...|+++.|...+....+
T Consensus 400 ~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 400 YLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHH
Confidence 65544 445666666666666666666665544332 3345566666665555544
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=4.2e-05 Score=58.84 Aligned_cols=125 Identities=12% Similarity=0.146 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCH--hhHHHHH
Q 043480 338 FTILIKAFLREGSSAMAEKLLNQMRGMNLSPD---RILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDV--ISYNALI 412 (493)
Q Consensus 338 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~ 412 (493)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+.+....|+. .....|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444443 4677777777777777643 233 223334556677788888888888888876422221 2344566
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 413 NGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQM 466 (493)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 466 (493)
..+...|++++|+..++..... ...+..+....++|.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7778888888888888664332 224556777888888888888888888765
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.31 E-value=2.7e-05 Score=69.35 Aligned_cols=121 Identities=11% Similarity=0.060 Sum_probs=76.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHH
Q 043480 50 FIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYT 129 (493)
Q Consensus 50 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 129 (493)
++..+...++++.|+.+++++.+.. |+ ....+++.+...++- .+|.+++++.+.. .+.+.....
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E-----------~~AI~ll~~aL~~-~p~d~~LL~ 238 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEE-----------VEAIRLLNEALKE-NPQDSELLN 238 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcH-----------HHHHHHHHHHHHh-CCCCHHHHH
Confidence 4445555677777777777776653 33 233455666555554 4555555555543 344555666
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHhccCchhHHHHHHHHHHh
Q 043480 130 IVIDGLCKAKEFDKAVQAWEHMIENGIKPD-NKACAALVVGLCGDGKVDLAYELTVGAMK 188 (493)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (493)
.....+.+.++++.|+++.+++.+. .|+ -.+|..|..+|...|+++.|+-.++.+.-
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 6666777777777777777777765 343 45777777777777777777777776653
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.30 E-value=0.004 Score=59.70 Aligned_cols=422 Identities=13% Similarity=0.115 Sum_probs=232.1
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHH--HHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChh
Q 043480 19 LVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIG--VLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFT 96 (493)
Q Consensus 19 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 96 (493)
....+++.+|++..+.+.++. |+. .|..++. .+.+.|+.++|..+++.....+ ..|..+...+-.+|...++.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~- 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKL- 93 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhh-
Confidence 356689999999999988864 332 2444444 4578999999999888876655 33778888899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccC--
Q 043480 97 LINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDG-- 174 (493)
Q Consensus 97 ~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 174 (493)
+.|..++++... ..|+......+..+|.+-+++.+-.+.=-++-+. ++-+...+-.+++.+...-
T Consensus 94 ----------d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~ 160 (932)
T KOG2053|consen 94 ----------DEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFS 160 (932)
T ss_pred ----------hHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccC
Confidence 667788888876 4566666666777888877766544433333332 2223344444444433211
Q ss_pred --------chhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHccC
Q 043480 175 --------KVDLAYELTVGAMKGK-VEFGVLIYNALISGFCRTGRIRRAMAIKSF-MKWNGCEPDLVTYNAILNYYCDEV 244 (493)
Q Consensus 175 --------~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~ 244 (493)
-..-|.+.++.+.+.+ ..-+..-...-...+...|++++|++++.. ....-...+...-+.-+..+...+
T Consensus 161 ~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~ 240 (932)
T KOG2053|consen 161 ENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLN 240 (932)
T ss_pred CcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhc
Confidence 1234566677776644 111222222234455678889999999843 333323344445556677788889
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHH----------------HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 043480 245 MLDEAEKLVMEMESCGIEPDVYSYNQLLKGL----------------CNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIE 308 (493)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 308 (493)
++.+..++-.++...| +|. |...++.+ ...+..+...+...+..... ....|-+-+.
T Consensus 241 ~w~~l~~l~~~Ll~k~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~le 313 (932)
T KOG2053|consen 241 RWQELFELSSRLLEKG--NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLE 313 (932)
T ss_pred ChHHHHHHHHHHHHhC--Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHH
Confidence 9999999988888776 332 22222211 11222333333333322221 1111222222
Q ss_pred HHH---HcCCHHHHHHHHHHHHHcCCCc-------------CHhHHHHHHHHH------------------------HHc
Q 043480 309 AFC---KGGQTRRAYKLFEGMRRRGIEL-------------DVVTFTILIKAF------------------------LRE 348 (493)
Q Consensus 309 ~~~---~~~~~~~a~~~~~~~~~~~~~~-------------~~~~~~~l~~~~------------------------~~~ 348 (493)
+.. .-|+.+++.-.|-+- -|-.| +......++..+ ...
T Consensus 314 l~kr~~~~gd~ee~~~~y~~k--fg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~ 391 (932)
T KOG2053|consen 314 LDKRYKLIGDSEEMLSYYFKK--FGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLL 391 (932)
T ss_pred HHHHhcccCChHHHHHHHHHH--hCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHh
Confidence 222 235555543322111 11010 000111111111 112
Q ss_pred CC-----HHHHHHHHHHHH---hCC------CCCCHH---------hHHHHHHHHHccCCHhH---HHHHHHHHHhCCCC
Q 043480 349 GS-----SAMAEKLLNQMR---GMN------LSPDRI---------LYTTIIDCLCKSREIGT---AYGVFLDMVEQGIT 402 (493)
Q Consensus 349 ~~-----~~~a~~~~~~~~---~~~------~~~~~~---------~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~ 402 (493)
|. .+....++.+.. ++| .-|+.. +.+.+++.+.+.++... |+-+++..... -+
T Consensus 392 G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~ 470 (932)
T KOG2053|consen 392 GLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SP 470 (932)
T ss_pred hccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CC
Confidence 21 223333333222 122 122322 34567777777777653 33344443333 13
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 403 PDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 403 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
-|..+--.+++.|...|-+..|.++++.+.-+.+.-|..-| .+...+...|++..+...++...+.
T Consensus 471 hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh-~~~~~~~t~g~~~~~s~~~~~~lkf 536 (932)
T KOG2053|consen 471 HNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH-LIFRRAETSGRSSFASNTFNEHLKF 536 (932)
T ss_pred ccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH-HHHHHHHhcccchhHHHHHHHHHHH
Confidence 34455556788888888888888888888655566443333 2445666778888888888777654
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.28 E-value=4.6e-05 Score=58.61 Aligned_cols=128 Identities=12% Similarity=0.157 Sum_probs=79.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcC--hhhHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS---IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLT--PFTYS 83 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~ 83 (493)
...|..++..+ ..++...+...++.+.... +.++ .....+...+...|++++|...|+........++ .....
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 34566666665 4788888888888887764 3332 2233345667778888888888888877642222 23445
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 043480 84 RFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHM 151 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 151 (493)
.+...+...|++ +.|+..++.... .......+......|.+.|++++|...|+..
T Consensus 90 ~LA~~~~~~~~~-----------d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQY-----------DEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCH-----------HHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 566667777777 444455544322 2233445556667777777777777777653
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.27 E-value=8.7e-05 Score=66.17 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=53.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhH
Q 043480 309 AFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGT 388 (493)
Q Consensus 309 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 388 (493)
.+...++++.|.++++++.+.. |+ ....++..+...++..+|.+++.+..+.. +.+...+..-...+.+.++++.
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 3333444555555555554442 22 22234444444444445555554444332 3344444444444455555555
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043480 389 AYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEM 431 (493)
Q Consensus 389 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 431 (493)
|+.+.+++.+. .+-+..+|..|..+|...|+++.|+..++.+
T Consensus 253 AL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 253 ALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555555543 1222335555555555555555555444443
No 144
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.18 E-value=6.4e-05 Score=56.58 Aligned_cols=88 Identities=9% Similarity=-0.035 Sum_probs=75.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
.-.+...+...|++++|.++|+.+...+ +.+..-|..+..++-..|++++|+..|......+ +.++..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3457777889999999999999999987 7777888889999999999999999999999887 5778888889999999
Q ss_pred cCChhhHHHH
Q 043480 92 VKNFTLINIL 101 (493)
Q Consensus 92 ~~~~~~a~~~ 101 (493)
.|+.+.|...
T Consensus 116 lG~~~~A~~a 125 (157)
T PRK15363 116 CDNVCYAIKA 125 (157)
T ss_pred cCCHHHHHHH
Confidence 9999554433
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.17 E-value=4e-06 Score=46.19 Aligned_cols=34 Identities=50% Similarity=0.981 Sum_probs=30.8
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 043480 126 VTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD 159 (493)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 159 (493)
.+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999998887
No 146
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.17 E-value=8.3e-05 Score=59.15 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=79.5
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRV--FSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
+.....+..++..+...|++++|...|+++.+.+..+ ....+..+..++.+.|++++|...+++.++.. +.+...+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 3556678889999999999999999999998754222 24678888999999999999999999998864 34566666
Q ss_pred HHHHHHhccCChhhHHHHHHHH---HHHHHHHHHHHHh
Q 043480 84 RFISGLCEVKNFTLINILLDNM---DKLALEVFHKMVS 118 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~---~~~a~~~~~~~~~ 118 (493)
.+..++...|+...+..-++.. .+.|.+.+++...
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 7777777776654333222111 1445555555544
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.15 E-value=4.2e-06 Score=45.70 Aligned_cols=33 Identities=36% Similarity=0.595 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 043480 126 VTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKP 158 (493)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 158 (493)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999998877
No 148
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=4.9e-06 Score=45.81 Aligned_cols=31 Identities=58% Similarity=1.065 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 043480 408 YNALINGLCKSSRVSEAMHLYEEMQIRGAHP 438 (493)
Q Consensus 408 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 438 (493)
|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 4444444444444444444444444444444
No 149
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.0047 Score=53.84 Aligned_cols=176 Identities=13% Similarity=0.027 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHh
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (493)
........+.+..++..|+..+..+++.. |.+..-|.--+..+...|++++|.--.+.-++.. +..+......-+++.
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHL 128 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhh
Confidence 34556678889999999999999999986 5566667777778888899998887776666543 222334555555666
Q ss_pred ccCChhhHHHHHHHHH----HHHHHHHHHHHhCCC-CCCHhhHHHHH-HHHhccCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 043480 91 EVKNFTLINILLDNMD----KLALEVFHKMVSKGR-EPDVVTYTIVI-DGLCKAKEFDKAVQAWEHMIENGIKPDNKACA 164 (493)
Q Consensus 91 ~~~~~~~a~~~~~~~~----~~a~~~~~~~~~~g~-~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 164 (493)
..++..+|.+.++... ..++..++.+..... +|.-.+|-.+- .++.-.|+.++|...--..++.. ..+.....
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~ 207 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALY 207 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHH
Confidence 5665555544443211 122333333322211 12223333332 34555677777776665555542 11223332
Q ss_pred HHHHHHhccCchhHHHHHHHHHHhC
Q 043480 165 ALVVGLCGDGKVDLAYELTVGAMKG 189 (493)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (493)
.-..++.-.++.+.+...|++.+..
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~l 232 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRL 232 (486)
T ss_pred hcccccccccchHHHHHHHhhhhcc
Confidence 2233344556667777777766654
No 150
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.12 E-value=0.0012 Score=55.51 Aligned_cols=187 Identities=11% Similarity=0.068 Sum_probs=105.4
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhH---HHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDY---NRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
++..+-..+..+.+.|++++|++.|+.+.... |.+.... ..++.++.+.+++++|...+++.++..+......+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 34444456777888999999999999999875 4444443 3456788999999999999999998743322233333
Q ss_pred HHHHHhc--cC---------------ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 043480 85 FISGLCE--VK---------------NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQA 147 (493)
Q Consensus 85 ll~~~~~--~~---------------~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 147 (493)
.+.+.+. .+ +...+ ..|+..|+.+++. -|+. .-..+|...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~--------~~A~~~~~~li~~--yP~S-------------~ya~~A~~r 166 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHA--------RAAFRDFSKLVRG--YPNS-------------QYTTDATKR 166 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHH--------HHHHHHHHHHHHH--CcCC-------------hhHHHHHHH
Confidence 3333321 11 11111 3455555555553 2222 222333333
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 148 WEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGK--VEFGVLIYNALISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
+..+... =..--..+.+.|.+.|.+..|..-++.+++.- .+........++.+|...|..++|......+.
T Consensus 167 l~~l~~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 167 LVFLKDR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3222221 00111144555666666666666666666531 22233445556677777777777766665543
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=7.9e-06 Score=44.57 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043480 442 TFKLLIGGLVQEKKLELACRLWDQMMEKGFTL 473 (493)
Q Consensus 442 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 473 (493)
+|+.++++|.+.|+++.|.++++.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44445555555555555555555554444443
No 152
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.09 E-value=0.00013 Score=62.93 Aligned_cols=129 Identities=14% Similarity=0.105 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc-cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 043480 337 TFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK-SREIGTAYGVFLDMVEQGITPDVISYNALINGL 415 (493)
Q Consensus 337 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 415 (493)
+|..++...-+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|..+|+..++. ++.+...|...+.-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34455555555555556666665555432 2233334333333222 34444566666655544 344555555555555
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 416 CKSSRVSEAMHLYEEMQIRGAHPD---EVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
...|+.+.|..+|++.... +.++ ...|...++--.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5566666666666665443 2211 23555555555566666666666655554
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.09 E-value=6.3e-05 Score=53.12 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHh
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (493)
++..++..+...|++++|.+.++++.+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 46678889999999999999999998875 5556778888999999999999999999988765 445567888888888
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHh
Q 043480 91 EVKNFTLINILLDNMDKLALEVFHKMVS 118 (493)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~a~~~~~~~~~ 118 (493)
..|++ +.|...+.....
T Consensus 80 ~~~~~-----------~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKY-----------EEALEAYEKALE 96 (100)
T ss_pred HHHhH-----------HHHHHHHHHHHc
Confidence 88988 455555655543
No 154
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.08 E-value=0.00015 Score=57.50 Aligned_cols=106 Identities=11% Similarity=0.046 Sum_probs=79.0
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRV--FSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
...|..++..+...|++++|+..|+++......+ ...+|..+..++...|++++|+..+++..... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4567888889999999999999999998654222 23578888999999999999999999998763 33445566666
Q ss_pred HHHh-------ccCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 87 SGLC-------EVKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 87 ~~~~-------~~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
..+. ..|+++.|...+ ++|..++++....
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~----~~a~~~~~~a~~~ 149 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWF----DQAAEYWKQAIAL 149 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHH----HHHHHHHHHHHHh
Confidence 6666 667776666555 5566777777553
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.08 E-value=0.00012 Score=54.31 Aligned_cols=99 Identities=10% Similarity=0.047 Sum_probs=78.3
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC--cChhhHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF---SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFS--LTPFTYS 83 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~ 83 (493)
+.++..++..+.+.|++++|.+.|+.+.+.. +.+ ...+..+..++.+.|++++|...|+.+...... ..+..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 3467788999999999999999999998764 222 346677889999999999999999999875322 1245677
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 84 RFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
.+..++...++. +.|...++++...
T Consensus 81 ~~~~~~~~~~~~-----------~~A~~~~~~~~~~ 105 (119)
T TIGR02795 81 KLGMSLQELGDK-----------EKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHhCCh-----------HHHHHHHHHHHHH
Confidence 788888899999 6667777777775
No 156
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.08 E-value=0.00012 Score=65.57 Aligned_cols=123 Identities=14% Similarity=0.138 Sum_probs=80.3
Q ss_pred CCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhH
Q 043480 331 IELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM--NLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISY 408 (493)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 408 (493)
.+.+......++..+....+.+.+..++-+.+.. ....-..+..++++.|...|..+.+..+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3446666666777666666677777776666643 11122234457777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043480 409 NALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQE 453 (493)
Q Consensus 409 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 453 (493)
+.||+.+.+.|++..|.++...|...+...++.|+..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777766555555666666555555554
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.08 E-value=8e-05 Score=64.21 Aligned_cols=144 Identities=12% Similarity=0.133 Sum_probs=106.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIR-HSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
+.+|..++++.-+.+..+.|+.+|+++++.+ ..+..+|...+..-.. .++.+.|..+|+...+. ++.+...|...+.
T Consensus 1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 3678999999999999999999999998654 4456666666666444 56666799999999876 4667788888899
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDV---VTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACA 164 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 164 (493)
.+...++. +.+..+|++.+.. .+++. ..|...+..-.+.|+.+.+..+.+++.+. .|+...+.
T Consensus 79 ~l~~~~d~-----------~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~ 144 (280)
T PF05843_consen 79 FLIKLNDI-----------NNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLE 144 (280)
T ss_dssp HHHHTT-H-----------HHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHH
T ss_pred HHHHhCcH-----------HHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHH
Confidence 99999988 6677888888765 33333 58999999999999999999999998875 34444444
Q ss_pred HHHH
Q 043480 165 ALVV 168 (493)
Q Consensus 165 ~l~~ 168 (493)
.+..
T Consensus 145 ~f~~ 148 (280)
T PF05843_consen 145 LFSD 148 (280)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 4443
No 158
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.04 E-value=0.00012 Score=65.51 Aligned_cols=124 Identities=14% Similarity=0.131 Sum_probs=98.5
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhH
Q 043480 260 GIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGL--RDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVT 337 (493)
Q Consensus 260 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 337 (493)
+.+.+......+++.+....+++.+..++.+....... .-+.+..++++.|.+.|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44567777888888888888888888888887765222 2345567899999999999999999999888999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc
Q 043480 338 FTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKS 383 (493)
Q Consensus 338 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (493)
++.++..+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988888766666667766666666554
No 159
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.00 E-value=0.0007 Score=51.11 Aligned_cols=89 Identities=10% Similarity=-0.051 Sum_probs=45.6
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043480 379 CLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLEL 458 (493)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 458 (493)
.+...|++++|..+|+-+.... +.+..-|-.|.-++-..|++++|+..+......++. |+..+..+..++...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHH
Confidence 3344555555555555555432 223344445555555555555555555555543321 45555555555555555555
Q ss_pred HHHHHHHHHHc
Q 043480 459 ACRLWDQMMEK 469 (493)
Q Consensus 459 a~~~~~~~~~~ 469 (493)
|.+.|+..+..
T Consensus 122 A~~aF~~Ai~~ 132 (157)
T PRK15363 122 AIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.98 E-value=0.00049 Score=59.71 Aligned_cols=206 Identities=9% Similarity=0.081 Sum_probs=114.8
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhC----CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHhccC----CCCcC-
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQS----NCRVF-SIDYNRFIGVLIRHSRFDLVQFYYQQMHPL----GFSLT- 78 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~- 78 (493)
...|...+..|-..|++++|.+.|.+..+. +-+.. ...|......+ +..++++|+..+++.... | .++
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G-~~~~ 112 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAG-RFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT--HHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcC-cHHH
Confidence 456888889999999999999999876432 21111 22233334444 444888888888877653 2 232
Q ss_pred -hhhHHHHHHHHhcc-CChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 043480 79 -PFTYSRFISGLCEV-KNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGI 156 (493)
Q Consensus 79 -~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 156 (493)
..++..+...|... ++++.|...+ ++|.++|+.--. ...-...+..+...+.+.|++++|.++|++....-.
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y----~~A~~~y~~e~~--~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYY----QKAAELYEQEGS--PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHH----HHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHH----HHHHHHHHHCCC--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 24566677777777 7887766666 344555543311 011234566777888888888888888888776432
Q ss_pred CC-----CH-HhHHHHHHHHhccCchhHHHHHHHHHHhCC--CCCC--hhhHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 043480 157 KP-----DN-KACAALVVGLCGDGKVDLAYELTVGAMKGK--VEFG--VLIYNALISGFCRT--GRIRRAMAIKSFMK 222 (493)
Q Consensus 157 ~~-----~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~--~~~~~a~~~~~~~~ 222 (493)
.. +. ..+...+-++...|+...|.+.++...... ...+ ......|+.++-.. ..+..++.-|+.+.
T Consensus 187 ~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 187 ENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp CHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred cccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 21 11 122334445556677777777777766432 1111 22334455555432 23555555555544
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.96 E-value=0.00021 Score=64.09 Aligned_cols=94 Identities=12% Similarity=0.037 Sum_probs=81.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhcc
Q 043480 13 RAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEV 92 (493)
Q Consensus 13 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 92 (493)
...+..+...|++++|++.|+++++.+ +.+...|..+..++...|++++|+..+++++... +.+...|..+..+|...
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 345778889999999999999999987 7778889999999999999999999999999875 45677888899999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 93 KNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 93 ~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
|++ +.|+..|++.+..
T Consensus 84 g~~-----------~eA~~~~~~al~l 99 (356)
T PLN03088 84 EEY-----------QTAKAALEKGASL 99 (356)
T ss_pred CCH-----------HHHHHHHHHHHHh
Confidence 999 6677778887774
No 162
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.95 E-value=0.00055 Score=50.64 Aligned_cols=97 Identities=11% Similarity=0.015 Sum_probs=54.8
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 043480 373 YTTIIDCLCKSREIGTAYGVFLDMVEQGIT--PDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP--DEVTFKLLIG 448 (493)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~ 448 (493)
+...+..+...|++++|...+..+.+.... .....+..+..++...|+++.|...++.+....... ...++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 444555556666666666666666643110 012344456666666666666666666665532111 2445556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 043480 449 GLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~ 469 (493)
++.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666654
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.95 E-value=1.9e-05 Score=54.08 Aligned_cols=81 Identities=17% Similarity=0.175 Sum_probs=52.1
Q ss_pred cCCHhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043480 383 SREIGTAYGVFLDMVEQGIT-PDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACR 461 (493)
Q Consensus 383 ~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 461 (493)
.|+++.|+.+++++.+.... |+...+..+..+|.+.|++++|..++++ .+.+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46777888888887765321 1344455577788888888888888877 32211 134555566777888888888888
Q ss_pred HHHH
Q 043480 462 LWDQ 465 (493)
Q Consensus 462 ~~~~ 465 (493)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.93 E-value=3.3e-05 Score=49.82 Aligned_cols=59 Identities=20% Similarity=0.311 Sum_probs=52.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL 73 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (493)
.++..+.+.|++++|++.|+++++.. |.+...+..+..++...|++++|...|+++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36788999999999999999999987 778889999999999999999999999999875
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.92 E-value=0.00044 Score=61.98 Aligned_cols=91 Identities=15% Similarity=0.035 Sum_probs=64.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 043480 342 IKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRV 421 (493)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 421 (493)
...+...|+++.|+..|+.+.+.. +.+...|..+..+|...|++++|...++++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 445556777777777777777655 4566677777777777777777777777777652 33556677777777777777
Q ss_pred hHHHHHHHHHHHc
Q 043480 422 SEAMHLYEEMQIR 434 (493)
Q Consensus 422 ~~a~~~~~~~~~~ 434 (493)
++|+..|++..+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777764
No 166
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.92 E-value=2.6e-05 Score=51.04 Aligned_cols=65 Identities=8% Similarity=0.077 Sum_probs=59.2
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHhccC
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHS-RFDLVQFYYQQMHPL 73 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 73 (493)
++.+|..++..+...|++++|+..|++.++.+ |.++..|..+..++...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 57889999999999999999999999999987 778889999999999999 799999999998764
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.92 E-value=1.9e-05 Score=54.00 Aligned_cols=80 Identities=10% Similarity=0.110 Sum_probs=58.6
Q ss_pred cCChhHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHH
Q 043480 22 AGLIDQAVHVFDEMTQSNCR-VFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINI 100 (493)
Q Consensus 22 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 100 (493)
+|+++.|+.+|+++.+..+. ++...+..+..++.+.|++++|..+++. .+.+ +.+......+..++...|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 68999999999999987632 2455566689999999999999999998 3332 2233455566899999999966665
Q ss_pred HHH
Q 043480 101 LLD 103 (493)
Q Consensus 101 ~~~ 103 (493)
.++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.91 E-value=4.1e-05 Score=49.91 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=53.1
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 19 LVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 19 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
+.+.|++++|+++|+++.+.. |.+...+..++.++.+.|++++|..+++++... .|+...|..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 357899999999999999986 778888999999999999999999999999887 4554444433
No 169
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.90 E-value=0.014 Score=51.62 Aligned_cols=438 Identities=14% Similarity=0.140 Sum_probs=229.6
Q ss_pred HHHHcCChhHHHHHHHHHhhCCCCCChhh------HHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHH--
Q 043480 18 NLVKAGLIDQAVHVFDEMTQSNCRVFSID------YNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGL-- 89 (493)
Q Consensus 18 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-- 89 (493)
.+.+++++.+|.++|.++-+.- ..++.. -+.++++|... +.+.-...+....+. .| ...|..+..+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 3467899999999999987753 333333 34566776543 444444444444443 23 33455555443
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHHHHHhC--CCC------------CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 043480 90 CEVKNFTLINILLDNMDKLALEVFHKMVSK--GRE------------PDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG 155 (493)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~--g~~------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (493)
-+.+.+..|. +.+....+. +.. +|...=+..+..+...|++.++..+++++...=
T Consensus 90 Y~~k~~~kal-----------~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 90 YKQKEYRKAL-----------QALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred HHhhhHHHHH-----------HHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3567775554 333333222 111 122333456778889999999999999987642
Q ss_pred C----CCCHHhHHHHHHHHhccCch--------hHHHHHHH-------HHHh------CCCCCChhhHHHHHHHHHhcC-
Q 043480 156 I----KPDNKACAALVVGLCGDGKV--------DLAYELTV-------GAMK------GKVEFGVLIYNALISGFCRTG- 209 (493)
Q Consensus 156 ~----~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~-------~~~~------~~~~~~~~~~~~l~~~~~~~~- 209 (493)
. .-+..+|+.++-.+.++--+ +-.-+.++ ++.. ..+.|.......++....-..
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~ 238 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK 238 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH
Confidence 2 35778888866655543111 11111111 1110 011222222222222211110
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHCCCCC----ChhhHHHHHHHHHccCCHHH
Q 043480 210 -RIRRAMAIKSFMKWNGCEPDLV-TYNAILNYYCDEVMLDEAEKLVMEMESCGIEP----DVYSYNQLLKGLCNSNQLDK 283 (493)
Q Consensus 210 -~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~ 283 (493)
+..--..+++.-...-+.|+.. ....+...+.. +.+++..+.+.+....+.+ -..+|..++....+.++...
T Consensus 239 e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~ 316 (549)
T PF07079_consen 239 ERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEE 316 (549)
T ss_pred hhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 0111111111112222333322 22333333333 5556666655554432211 23467777777888888888
Q ss_pred HHHHHHHHHHcCCCCChhh------HHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcC-HhH-HHHHHHHHHHcCC-
Q 043480 284 AYMFMVKKMEAKGLRDKVS------YNTVIEAFCK----GGQTRRAYKLFEGMRRRGIELD-VVT-FTILIKAFLREGS- 350 (493)
Q Consensus 284 a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~-~~~l~~~~~~~~~- 350 (493)
|...+.-...-.+... .+ -..+-+..+. ..+...-+.+|+.....++... .+. .-.-..-+-+.|.
T Consensus 317 a~q~l~lL~~ldp~~s-vs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~ 395 (549)
T PF07079_consen 317 AKQYLALLKILDPRIS-VSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQC 395 (549)
T ss_pred HHHHHHHHHhcCCcch-hhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCc
Confidence 8777665554433211 11 1112222221 1223344556666655533211 111 1112223445555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHH----HHHHc---cCCHhHHHHHHHHHHhCCCCCCHh----hHHHHHHH--HHh
Q 043480 351 SAMAEKLLNQMRGMNLSPDRILYTTII----DCLCK---SREIGTAYGVFLDMVEQGITPDVI----SYNALING--LCK 417 (493)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~--~~~ 417 (493)
-++|.++++.+.+.. +-|...-|.+. .+|.+ ...+.+-..+-+-+.+.|++|-.. .-|.|.++ +..
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 889999999988743 33443333332 22322 223444444444555678777543 34444433 456
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043480 418 SSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALI 482 (493)
Q Consensus 418 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 482 (493)
.|++.++.-.-..+.+ +.|++.+|..+.-.+....++++|..++..+ +|+..++++=+
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskv 532 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSKV 532 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHHH
Confidence 8999998876666655 6899999999999999999999999998876 67777666543
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.90 E-value=0.00032 Score=49.39 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=43.3
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043480 376 IIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKK 455 (493)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 455 (493)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++........ +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHh
Confidence 3444444555555555555554431 222234444455555555555555555555443211 33444555555555555
Q ss_pred HHHHHHHHHHHH
Q 043480 456 LELACRLWDQMM 467 (493)
Q Consensus 456 ~~~a~~~~~~~~ 467 (493)
++.|...++...
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.89 E-value=0.0065 Score=52.78 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=40.3
Q ss_pred HHHcc-CCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----CHh-HHHHH
Q 043480 274 GLCNS-NQLDKAYMFMVKKMEAKGLRD-----KVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIEL-----DVV-TFTIL 341 (493)
Q Consensus 274 ~~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~~~l 341 (493)
.|... |+++.|++.|.+........+ ...+..+...+.+.|++++|.++|+++....... +.. .+...
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 555555555555443211000 1123344555666666666666666665432211 111 12222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 043480 342 IKAFLREGSSAMAEKLLNQMRG 363 (493)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~ 363 (493)
+-++...||...|.+.+++...
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 3344455666666666666654
No 172
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.00024 Score=58.89 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=52.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChhH
Q 043480 345 FLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD-VISYNALINGLCKSSRVSE 423 (493)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 423 (493)
..+.+++.+|+..|...++.. +.|.+.|..=..+|.+.|.++.|.+-.+..+.. .|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 344556666666666666554 445555555556666666666666655555543 222 3455666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHH
Q 043480 424 AMHLYEEMQIRGAHPDEVTF 443 (493)
Q Consensus 424 a~~~~~~~~~~~~~p~~~~~ 443 (493)
|++.|++.++ +.|+-.+|
T Consensus 168 A~~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHHHHhhhc--cCCCcHHH
Confidence 6666666555 34544443
No 173
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.0011 Score=55.34 Aligned_cols=101 Identities=10% Similarity=0.061 Sum_probs=80.7
Q ss_pred CCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHH
Q 043480 367 SPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSS---RVSEAMHLYEEMQIRGAHPDEVTF 443 (493)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~ 443 (493)
+-|...|..|...|...|+.+.|...|.+..+. -++|...+..+..++..+. ...++.++|+++...+.. |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 678888999999999999999999999988876 3556777777777666543 456788899998875433 78888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 444 KLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 444 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
..|...+...|++.+|...|+.|++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 88888899999999999999999875
No 174
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.88 E-value=0.015 Score=50.98 Aligned_cols=105 Identities=21% Similarity=0.246 Sum_probs=61.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHH
Q 043480 233 YNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCK 312 (493)
Q Consensus 233 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (493)
.+..+.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-..+... ..++..|...+.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3444555556666666666655443 36666666777777777777665443211 2355667777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHH
Q 043480 313 GGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKL 357 (493)
Q Consensus 313 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 357 (493)
.|+..+|..+...+ ++..-+..|.+.|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 77777766665551 113445556666666666544
No 175
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.86 E-value=0.00034 Score=48.78 Aligned_cols=74 Identities=15% Similarity=0.385 Sum_probs=38.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccC--------CHhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 043480 343 KAFLREGSSAMAEKLLNQMRGMNL-SPDRILYTTIIDCLCKSR--------EIGTAYGVFLDMVEQGITPDVISYNALIN 413 (493)
Q Consensus 343 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 413 (493)
..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+|+.|+..+++|+..+|+.++.
T Consensus 33 ~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~ 112 (120)
T PF08579_consen 33 NSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLG 112 (120)
T ss_pred HHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 333444566666666666666555 556666666655554321 12234455555555555555555555555
Q ss_pred HHH
Q 043480 414 GLC 416 (493)
Q Consensus 414 ~~~ 416 (493)
.+.
T Consensus 113 ~Ll 115 (120)
T PF08579_consen 113 SLL 115 (120)
T ss_pred HHH
Confidence 443
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.85 E-value=0.0023 Score=60.09 Aligned_cols=136 Identities=11% Similarity=0.003 Sum_probs=74.4
Q ss_pred CCcCHhHHHHHHHHHHH--c---CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC--------CHhHHHHHHHHHH
Q 043480 331 IELDVVTFTILIKAFLR--E---GSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSR--------EIGTAYGVFLDMV 397 (493)
Q Consensus 331 ~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~ 397 (493)
.+.+...|...+.+... . ++...|..+|++..+.. +.....|..+..++.... +...+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34455666666555432 1 22556666666666653 333344444333332211 1223333333333
Q ss_pred hC-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 398 EQ-GITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 398 ~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.. ..+.+...|..+.-.+...|++++|...++++... .|+...|..+...+...|+.++|...++++.+.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 21 12334455666655555667777777777777764 356667777777777777777777777777654
No 177
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00095 Score=55.82 Aligned_cols=120 Identities=9% Similarity=0.127 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHH
Q 043480 25 IDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDN 104 (493)
Q Consensus 25 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 104 (493)
.+....-++.-+..+ |.|...|-.|..+|..+|++..|..-|.+..+.. .+++..+..+..++....+...-
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~t------ 209 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMT------ 209 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCccc------
Confidence 344444455555555 7888899999999999999999999999988874 56777777777666544322111
Q ss_pred HHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 043480 105 MDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG 155 (493)
Q Consensus 105 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (493)
.++..+|++++.. .+.|+.+...|...+...|++.+|...|+.|.+..
T Consensus 210 --a~a~~ll~~al~~-D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 210 --AKARALLRQALAL-DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred --HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 5788888888886 45577778888888999999999999999999863
No 178
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.83 E-value=3.1e-05 Score=41.09 Aligned_cols=31 Identities=42% Similarity=0.859 Sum_probs=26.4
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 043480 126 VTYTIVIDGLCKAKEFDKAVQAWEHMIENGI 156 (493)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 156 (493)
.+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3788899999999999999999999988763
No 179
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.82 E-value=0.00059 Score=47.60 Aligned_cols=88 Identities=18% Similarity=0.273 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCC-CcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Q 043480 47 YNRFIGVLIRHSRFDLVQFYYQQMHPLGF-SLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDV 125 (493)
Q Consensus 47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~ 125 (493)
....|.-+...+++...-.+|+.+.+.|+ -|+..+|+.++.+.++..--. .-.+.-.-..+.+++.|+..+.+|+.
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~---~~ie~kl~~LLtvYqDiL~~~lKP~~ 104 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS---EDIENKLTNLLTVYQDILSNKLKPND 104 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc---hhHHHHHHHHHHHHHHHHHhccCCcH
Confidence 34456667777999999999999999998 899999999998887654322 11222225678899999988899999
Q ss_pred hhHHHHHHHHhc
Q 043480 126 VTYTIVIDGLCK 137 (493)
Q Consensus 126 ~~~~~l~~~~~~ 137 (493)
.+|+.++..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.79 E-value=0.014 Score=49.10 Aligned_cols=58 Identities=10% Similarity=0.002 Sum_probs=44.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 410 ALINGLCKSSRVSEAMHLYEEMQIRG--AHPDEVTFKLLIGGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 410 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 467 (493)
.+.+-|.+.|.+..|..-++.+.+.- .+........++.+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 44566888899999999898887642 22246777788899999999999988877664
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.79 E-value=0.00093 Score=52.96 Aligned_cols=95 Identities=14% Similarity=0.058 Sum_probs=56.5
Q ss_pred HHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHH
Q 043480 370 RILYTTIIDCLCKSREIGTAYGVFLDMVEQGITP--DVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLL 446 (493)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l 446 (493)
...|..+...+...|++++|...+++.+.....| ...++..+..++...|++++|+..+++.... .| ....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 3445555666666677777777777776542121 1235666777777777777777777777653 22 34555555
Q ss_pred HHHHH-------hcCCHHHHHHHHHHH
Q 043480 447 IGGLV-------QEKKLELACRLWDQM 466 (493)
Q Consensus 447 ~~~~~-------~~g~~~~a~~~~~~~ 466 (493)
...+. ..|+++.|...+++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 55555 667766554444433
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.78 E-value=0.0013 Score=61.83 Aligned_cols=141 Identities=10% Similarity=-0.083 Sum_probs=92.5
Q ss_pred CCCChhhHHHHHHHHHh--cCC---hhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCC---h-hhHHHHHHHHHHHHH
Q 043480 40 CRVFSIDYNRFIGVLIR--HSR---FDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKN---F-TLINILLDNMDKLAL 110 (493)
Q Consensus 40 ~~~~~~~~~~l~~~~~~--~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~-~~a~~~~~~~~~~a~ 110 (493)
.+.+...|...+++... .++ ...|+.+|++.++.. +.....+..+..++..... . +... ..+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l-------~~a~ 404 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQL-------AALS 404 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHH-------HHHH
Confidence 46777888877766433 222 568888888888763 2233444443333322111 1 1111 2333
Q ss_pred HHHHHHHhC-CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhC
Q 043480 111 EVFHKMVSK-GREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKG 189 (493)
Q Consensus 111 ~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (493)
+...+.... ..+.+...|..+.......|++++|...+++....+ |+..+|..+...+...|+.++|.+.+.+....
T Consensus 405 ~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 405 TELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444443332 134455777777777777899999999999999874 68888999999999999999999999998876
Q ss_pred C
Q 043480 190 K 190 (493)
Q Consensus 190 ~ 190 (493)
.
T Consensus 483 ~ 483 (517)
T PRK10153 483 R 483 (517)
T ss_pred C
Confidence 4
No 183
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.77 E-value=0.0026 Score=50.64 Aligned_cols=83 Identities=11% Similarity=0.027 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 043480 337 TFTILIKAFLREGSSAMAEKLLNQMRGMNLSPD--RILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALING 414 (493)
Q Consensus 337 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 414 (493)
.+..+...+...|++++|...|++..+....+. ...+..+...+...|++++|...+.+.++.. +-+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444555555666666666655554321111 2345555555555555555555555555431 1133344444444
Q ss_pred HHhcCC
Q 043480 415 LCKSSR 420 (493)
Q Consensus 415 ~~~~g~ 420 (493)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 544444
No 184
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.77 E-value=3.9e-05 Score=40.69 Aligned_cols=29 Identities=34% Similarity=0.605 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043480 442 TFKLLIGGLVQEKKLELACRLWDQMMEKG 470 (493)
Q Consensus 442 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 470 (493)
+|+.++++|.+.|++++|.+++++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34555555555555555555555554443
No 185
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.76 E-value=0.00037 Score=57.83 Aligned_cols=102 Identities=14% Similarity=0.189 Sum_probs=84.3
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCCh
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNF 95 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 95 (493)
..-..+.+++.+|+..|.++++.+ |.|++-|.--..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 345678899999999999999987 7788888889999999999999999999998865 44567999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043480 96 TLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVI 132 (493)
Q Consensus 96 ~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 132 (493)
..|++.|++.+. +.|+-.+|-.=+
T Consensus 166 -----------~~A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 166 -----------EEAIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred -----------HHHHHHHHhhhc--cCCCcHHHHHHH
Confidence 566677777776 567666554433
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.72 E-value=0.00021 Score=46.51 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=38.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043480 416 CKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAAL 481 (493)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 481 (493)
...|++++|+++|+++....+. +...+..++.+|.+.|++++|.++++++... .|+...+..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 3456667777777776654322 5666666677777777777777777766654 4554444443
No 187
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.70 E-value=0.029 Score=49.12 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 043480 336 VTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGL 415 (493)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 415 (493)
.+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-..+... . -++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence 455666777788899998888877665 68999999999999999999988776432 1 1347799999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043480 416 CKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQ 465 (493)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 465 (493)
.+.|+..+|..++.++ + + ..-+..|.++|++.+|.+.--+
T Consensus 248 ~~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999988872 2 2 3456678888888888766433
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.65 E-value=0.016 Score=44.72 Aligned_cols=132 Identities=15% Similarity=0.101 Sum_probs=80.3
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCC
Q 043480 41 RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKG 120 (493)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g 120 (493)
.|++..-..+..++.+.|++.+|...|++...--+..|+.....+.++....+++ ..|...++++.+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~-----------A~a~~tLe~l~e~~ 154 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF-----------AAAQQTLEDLMEYN 154 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH-----------HHHHHHHHHHhhcC
Confidence 3555555566777777777777777777776654556666677777777777777 44455555554431
Q ss_pred C-CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHH
Q 043480 121 R-EPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVG 185 (493)
Q Consensus 121 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 185 (493)
. -.++.+...+.+.+...|.+.+|...|+..... -|+..........+.++|+.+++..-+..
T Consensus 155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 0 012234445566777777777777777777764 45555544445555666666655544333
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.64 E-value=0.0038 Score=45.45 Aligned_cols=107 Identities=16% Similarity=0.164 Sum_probs=69.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHhccCchhHHHHHHHHHHhCCCC--CChhhHHHHHHHHH
Q 043480 131 VIDGLCKAKEFDKAVQAWEHMIENGIKPD--NKACAALVVGLCGDGKVDLAYELTVGAMKGKVE--FGVLIYNALISGFC 206 (493)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 206 (493)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667778889999999998888776544 345666777788888888888888887764211 12222223344566
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043480 207 RTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYC 241 (493)
Q Consensus 207 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 241 (493)
..|+.++|++.+-.... ++...|..-|..|+
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 77888888877766552 33335555555543
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.64 E-value=0.00036 Score=44.91 Aligned_cols=57 Identities=18% Similarity=0.238 Sum_probs=35.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 412 INGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
...+...|++++|...|+++.+.... +...+..+..++...|++++|..+++++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44566666777777777776665321 5666666666677777777777777666643
No 191
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.63 E-value=0.0021 Score=51.11 Aligned_cols=86 Identities=23% Similarity=0.360 Sum_probs=53.4
Q ss_pred CHhHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc----------------CCHhHHHHH
Q 043480 334 DVVTFTILIKAFLR-----EGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKS----------------REIGTAYGV 392 (493)
Q Consensus 334 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~ 392 (493)
+..+|..++..|.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+. .+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44445445444432 344555555555555555555666666655555331 234567888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 043480 393 FLDMVEQGITPDVISYNALINGLCKSS 419 (493)
Q Consensus 393 ~~~~~~~~~~p~~~~~~~l~~~~~~~g 419 (493)
+++|...|+-||..++..++..+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 888888888888888888888885544
No 192
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.61 E-value=0.063 Score=50.47 Aligned_cols=195 Identities=10% Similarity=0.044 Sum_probs=101.2
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHH----------HHHhcCChhHHHHHHHHhccCC
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIG----------VLIRHSRFDLVQFYYQQMHPLG 74 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~a~~~~~~~~~~~ 74 (493)
..|.|.+|..|+......-.++.|...|-+... -+....-..+-. .-.--|++++|.++|-++-++.
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 467888999888888888888888887765432 111211111111 1122478888888888875542
Q ss_pred CCcChhhHHHHHHHHhccCChhhHHHHHHHHH-----HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 043480 75 FSLTPFTYSRFISGLCEVKNFTLINILLDNMD-----KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWE 149 (493)
Q Consensus 75 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 149 (493)
+ .+....+.|++-...+++..-- +.-...|+.+-. ...+...|......|...|+.+.-.+.+-
T Consensus 765 L---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~--~fa~~~~We~A~~yY~~~~~~e~~~ecly 833 (1189)
T KOG2041|consen 765 L---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGE--TFAEMMEWEEAAKYYSYCGDTENQIECLY 833 (1189)
T ss_pred h---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccchHhHHHHHH
Confidence 1 2233344444432222221100 111222222221 11233445555566666666554433332
Q ss_pred HHHH--------CCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 150 HMIE--------NGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFM 221 (493)
Q Consensus 150 ~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 221 (493)
.+.. ..++-+....-.+..++.+.|.-++|.+.|-+... | ...+..|...++|.+|.++-+..
T Consensus 834 ~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 834 RLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 2211 12344556666677777777777777766544321 1 12345566667777777665554
Q ss_pred H
Q 043480 222 K 222 (493)
Q Consensus 222 ~ 222 (493)
.
T Consensus 905 ~ 905 (1189)
T KOG2041|consen 905 Q 905 (1189)
T ss_pred c
Confidence 3
No 193
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.57 E-value=0.00042 Score=45.88 Aligned_cols=58 Identities=9% Similarity=0.027 Sum_probs=53.5
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG 74 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (493)
...|.+.++++.|+++++.+...+ |.++..|.....++...|++++|...|+...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467899999999999999999987 7788899999999999999999999999999874
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.57 E-value=0.0027 Score=55.16 Aligned_cols=271 Identities=12% Similarity=-0.031 Sum_probs=164.3
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHhcc--C--CC-CcChhhHHHHH
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFS----IDYNRFIGVLIRHSRFDLVQFYYQQMHP--L--GF-SLTPFTYSRFI 86 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~--~~-~~~~~~~~~ll 86 (493)
..-+++.|+...-+.+|+.+++.| .-|. .+|..+..+|.-.++|++|+++...=+. + |- .-....-..|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 356799999999999999999887 3333 3466667777788889999877533211 0 10 11122233455
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC--------------------HHHHHH
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKE--------------------FDKAVQ 146 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~ 146 (493)
..+-..|.+++|...-.+-.+-|.++=+++.+ ...+-.+..+|...|+ ++.|.+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e------~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLE------SRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhh------hHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 55666677877776555555555555555533 2334445566655442 344555
Q ss_pred HHHHHHH----CCCC-CCHHhHHHHHHHHhccCchhHHHHHHHHHHh----CCC-CCChhhHHHHHHHHHhcCCHHHHHH
Q 043480 147 AWEHMIE----NGIK-PDNKACAALVVGLCGDGKVDLAYELTVGAMK----GKV-EFGVLIYNALISGFCRTGRIRRAMA 216 (493)
Q Consensus 147 ~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 216 (493)
.|.+-++ .|-. .--.+|..|...|.-.|+++.|+...+.-+. .|- ......+..+..+++-.|+++.|.+
T Consensus 177 fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~e 256 (639)
T KOG1130|consen 177 FYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIE 256 (639)
T ss_pred HHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHH
Confidence 5543221 1100 0124566667777778999999887765443 221 1123467778888999999999998
Q ss_pred HHHHHHHCCC-----CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC----C-CCCChhhHHHHHHHHHccCCHHHHHH
Q 043480 217 IKSFMKWNGC-----EPDLVTYNAILNYYCDEVMLDEAEKLVMEMESC----G-IEPDVYSYNQLLKGLCNSNQLDKAYM 286 (493)
Q Consensus 217 ~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 286 (493)
.|+......+ .....+.-++.+.|.-..++++|+.++.+-... + ..-....+-++..+|...|..++|+.
T Consensus 257 hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 257 HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 8877543211 112233445667777777888888877663321 1 11234456678888888888888887
Q ss_pred HHHHHHH
Q 043480 287 FMVKKME 293 (493)
Q Consensus 287 ~~~~~~~ 293 (493)
+.+...+
T Consensus 337 fae~hl~ 343 (639)
T KOG1130|consen 337 FAELHLR 343 (639)
T ss_pred HHHHHHH
Confidence 7666554
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.54 E-value=0.0035 Score=45.62 Aligned_cols=87 Identities=7% Similarity=-0.089 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcC----hhhHHH
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF--SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLT----PFTYSR 84 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ 84 (493)
+...+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++..... |+ ......
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHH
Confidence 445678889999999999999999999875443 3345567788999999999999999998753 33 222233
Q ss_pred HHHHHhccCChhhHH
Q 043480 85 FISGLCEVKNFTLIN 99 (493)
Q Consensus 85 ll~~~~~~~~~~~a~ 99 (493)
+.-++...|+.++|.
T Consensus 81 ~Al~L~~~gr~~eAl 95 (120)
T PF12688_consen 81 LALALYNLGRPKEAL 95 (120)
T ss_pred HHHHHHHCCCHHHHH
Confidence 344667789995544
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.54 E-value=0.00055 Score=44.67 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=44.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 043480 404 DVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEK-KLELACRLWDQMME 468 (493)
Q Consensus 404 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 468 (493)
+..+|..+...+...|++++|+..|++..+.+.. +...|..+..++...| ++++|.+.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456677777777777777777777777765322 5667777777777777 57777777777765
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.039 Score=45.29 Aligned_cols=133 Identities=11% Similarity=0.061 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHH-----H
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTT-----I 376 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 376 (493)
.-+.++..+.-.|.+.-.+..+.+.++...+.++...+.+.+.-.+.||.+.|...|++..+..-..+....+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34556666667788888888999988887777888888888888889999999999997775322333333333 3
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 043480 377 IDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRG 435 (493)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (493)
...|.-.+++..|...+.++.... +.|+...|.-.-+..-.|+..+|++.++.|....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 334455677888888888887653 3355555555555566788999999999998753
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.50 E-value=0.055 Score=50.34 Aligned_cols=103 Identities=12% Similarity=0.200 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHH
Q 043480 316 TRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLD 395 (493)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 395 (493)
.+-+.++-+++... +..+...+...+.+...+..|.++|..|-+ ...+++.....+++.+|..+-++
T Consensus 732 ~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 732 VDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred HHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhh
Confidence 34444444444332 444555555555566667777777776643 23456666777788888777776
Q ss_pred HHhCCCCCCHh-----------hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 396 MVEQGITPDVI-----------SYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 396 ~~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
..+. .||.. -|...-.+|.++|+..+|.++++++..
T Consensus 799 hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 799 HPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred Cccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 6653 33322 133344567778888888888888754
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.48 E-value=0.026 Score=46.23 Aligned_cols=66 Identities=8% Similarity=0.087 Sum_probs=48.8
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF---SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG 74 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (493)
++..+-..+..+...|++++|++.|+.+...- |.+ ......++.++.+.|++++|...+++.++.-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44555567888899999999999999998763 322 3345567788999999999999999998763
No 200
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.071 Score=46.87 Aligned_cols=155 Identities=12% Similarity=0.023 Sum_probs=90.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHH-----------
Q 043480 273 KGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTIL----------- 341 (493)
Q Consensus 273 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----------- 341 (493)
.++.-.|++++|...-...++.... +......-..++...++.+.+...|++..+.+ |+...-...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHH
Confidence 3455667777776665555554221 21111111223334566677777777666542 332221111
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHh---hHHHHHH
Q 043480 342 --IKAFLREGSSAMAEKLLNQMRGM---NLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVI---SYNALIN 413 (493)
Q Consensus 342 --~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~ 413 (493)
..-..+.|++..|.+.+.+.+.. ++.++...|.....+..+.|+.++|+.--++..+. |.. .+..-..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~ 329 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRAN 329 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHH
Confidence 12235678888888888887753 34555666777777777888888888877777653 322 2222334
Q ss_pred HHHhcCChhHHHHHHHHHHHc
Q 043480 414 GLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 414 ~~~~~g~~~~a~~~~~~~~~~ 434 (493)
++...+++++|.+-++...+.
T Consensus 330 c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 566678888888888887654
No 201
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.37 E-value=0.084 Score=46.10 Aligned_cols=257 Identities=14% Similarity=0.081 Sum_probs=160.3
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH----HHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGV----LIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
.++-.-.|+++.|.+-|+.|... +.+-..-+++ -.+.|..+.|.+.-++.-..- +--+..+...+...+.
T Consensus 127 AQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~ 200 (531)
T COG3898 127 AQAALLEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCA 200 (531)
T ss_pred HHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHh
Confidence 45556679999999999998753 2333332322 246788888988888876653 3335678888999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHh--hHHHHHHH---HhccCCHHHHHHHHHHHHHCCCCCCH-HhHHH
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVV--TYTIVIDG---LCKAKEFDKAVQAWEHMIENGIKPDN-KACAA 165 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 165 (493)
.|+|+.|+++.+... +..+ +.++.. .-..|+.+ -.-.-+...|.+.-.+..+ +.||. ..-..
T Consensus 201 ~gdWd~AlkLvd~~~--~~~v--------ie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~ 268 (531)
T COG3898 201 AGDWDGALKLVDAQR--AAKV--------IEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVV 268 (531)
T ss_pred cCChHHHHHHHHHHH--HHHh--------hchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHH
Confidence 999977776665432 1111 122221 11122211 1112456666665555554 35553 33344
Q ss_pred HHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHcc
Q 043480 166 LVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWN-GC-EPDLVTYNAILNYYCDE 243 (493)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~~ 243 (493)
....+.+.|++.++-.+++.+-+....|+. + .+..+.+.|+. ++.-++..... .+ +.+..+...+..+....
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence 567788999999999999998887544443 2 23344556652 22222222211 11 34556666777888889
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCC
Q 043480 244 VMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCN-SNQLDKAYMFMVKKMEAKGLR 298 (493)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~ 298 (493)
|++..|..--+.... ..|....|..|.+.-.. .|+-+++...+.+.......|
T Consensus 343 ~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 343 GEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred cchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 999888887777665 35788888887776554 499999999888888765444
No 202
>PRK15331 chaperone protein SicA; Provisional
Probab=97.35 E-value=0.0051 Score=46.80 Aligned_cols=83 Identities=10% Similarity=-0.096 Sum_probs=66.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCC
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKN 94 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 94 (493)
.+--+...|++++|..+|..+...+ +.+..-|..|..++...+++++|+..|......+ ..|+..+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 4555678899999999999988877 5667777888888999999999999999887665 3555556667889999999
Q ss_pred hhhHH
Q 043480 95 FTLIN 99 (493)
Q Consensus 95 ~~~a~ 99 (493)
.+.|.
T Consensus 121 ~~~A~ 125 (165)
T PRK15331 121 AAKAR 125 (165)
T ss_pred HHHHH
Confidence 95444
No 203
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.35 E-value=0.01 Score=47.34 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH
Q 043480 245 MLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQL 281 (493)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 281 (493)
+.+-|++++++|...|+-||..++..+++.+.+.+..
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 3466888888888888888888888888888776643
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.30 E-value=0.0067 Score=51.48 Aligned_cols=99 Identities=11% Similarity=0.056 Sum_probs=74.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhccCC--CCcChhhHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF---SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG--FSLTPFTYS 83 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 83 (493)
...|......+.+.|++++|+..|+.+++.. |.+ +..+..+...|...|++++|...|+.+.+.. .+..+..+.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 3456666666678899999999999999875 333 3577888999999999999999999998752 122345566
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 84 RFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
.+..++...|+. +.|..+|+.++..
T Consensus 222 klg~~~~~~g~~-----------~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDT-----------AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCH-----------HHHHHHHHHHHHH
Confidence 667778889999 5566666666653
No 205
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.25 E-value=0.0049 Score=47.48 Aligned_cols=73 Identities=19% Similarity=0.313 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHH
Q 043480 407 SYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK-----GFTLDKTVSAA 480 (493)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~ 480 (493)
+...++..+...|++++|..+.+.+....+. |...|..++.+|...|+...|.++|+++.+. |+.|+..+-..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 3455666677788888888888888775322 6778888888888888888888888777543 77777766443
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.25 E-value=0.014 Score=49.49 Aligned_cols=96 Identities=13% Similarity=0.060 Sum_probs=58.7
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDV----ISYNALINGLCKSSRVSEAMHLYEEMQIRGAH--PDEVTFKL 445 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~ 445 (493)
.|...+..+.+.|++++|...|+.+++. .|+. ..+..+..+|...|++++|...|+.+.+.... .....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444445557777777777777764 2322 35556666777777777777777777653211 12445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 446 LIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 446 l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
++..+...|+.+.|.++++.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566666777777777777777664
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.24 E-value=0.0012 Score=50.89 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC-----CCCcChhh
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL-----GFSLTPFT 81 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 81 (493)
+...++..+...|+++.|+.+.+.+...+ |.+...|..++.++...|+..+|.+.|+++.+. |+.|++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 45667778888999999999999999987 888889999999999999999999999888643 77777754
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.096 Score=43.11 Aligned_cols=142 Identities=13% Similarity=0.109 Sum_probs=105.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHH----
Q 043480 267 SYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILI---- 342 (493)
Q Consensus 267 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 342 (493)
+.+.++..+.-.|.+.-....+.+.++..+..++.....+++.-.+.|+.+.|...|+...+..-..+..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4556677777788888889999999988777788888889999999999999999999887654445555554443
Q ss_pred -HHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHH
Q 043480 343 -KAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNAL 411 (493)
Q Consensus 343 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 411 (493)
..|...+++..|...+.++...+ +.++...|.-.-+..-.|+..+|.+.++.|.+. .|...+-+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 34556788888999898888765 455555555444555579999999999999986 4554444433
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.16 E-value=0.004 Score=41.10 Aligned_cols=55 Identities=16% Similarity=0.057 Sum_probs=29.9
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 414 GLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 414 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.|.+.+++++|.++++++...++. +...+......+.+.|++++|.+.+++..+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 445555555555555555553222 4555555555555555666665555555543
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.14 E-value=0.18 Score=47.23 Aligned_cols=264 Identities=15% Similarity=0.114 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHH---------HHhhCCCCCChhhHHHHHHHHHhcCCh--hHHHHHHHHhccCCCCcCh
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFD---------EMTQSNCRVFSIDYNRFIGVLIRHSRF--DLVQFYYQQMHPLGFSLTP 79 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~ 79 (493)
.+..=+-.|..+|.+++|.++-- .+-.. ..+.-.++..-.+|.+-++. -+.+.-++++.++|-.|+.
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~ 635 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND 635 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence 34444455677777777754321 00000 01111233333445444433 3444455666667755766
Q ss_pred hhHHHHHHHHhccCChhhHHHHHHHH--HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC--C
Q 043480 80 FTYSRFISGLCEVKNFTLINILLDNM--DKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN--G 155 (493)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~ 155 (493)
.. +...++-.|++.+|..++.+- ...|+++|..|... . ...-+...|..++-..+.++-.+- +
T Consensus 636 iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF---------D-~aQE~~~~g~~~eKKmL~RKRA~WAr~ 702 (1081)
T KOG1538|consen 636 LL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF---------D-YAQEFLGSGDPKEKKMLIRKRADWARN 702 (1081)
T ss_pred HH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH---------H-HHHHHhhcCChHHHHHHHHHHHHHhhh
Confidence 43 334566678886666655442 24455555544321 1 233444455544444433322111 1
Q ss_pred C-CCCHHhHHHHHHHHhccCchhHHHHHHHH------HHhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043480 156 I-KPDNKACAALVVGLCGDGKVDLAYELTVG------AMKGKV---EFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNG 225 (493)
Q Consensus 156 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 225 (493)
+ +|. .....+...|+.++|..+..+ +.+.+. ..+..+...+...+.+...+.-|-++|.+|-.
T Consensus 703 ~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-- 775 (1081)
T KOG1538|consen 703 IKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-- 775 (1081)
T ss_pred cCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--
Confidence 1 121 122333444555555443211 000000 11222222333333344445555666655542
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 043480 226 CEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNT 305 (493)
Q Consensus 226 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 305 (493)
...+.......+++++|..+-+...+ +.|| +|....+.++...++++|.+
T Consensus 776 -------~ksiVqlHve~~~W~eAFalAe~hPe--~~~d--Vy~pyaqwLAE~DrFeEAqk------------------- 825 (1081)
T KOG1538|consen 776 -------LKSLVQLHVETQRWDEAFALAEKHPE--FKDD--VYMPYAQWLAENDRFEEAQK------------------- 825 (1081)
T ss_pred -------HHHHhhheeecccchHhHhhhhhCcc--cccc--ccchHHHHhhhhhhHHHHHH-------------------
Confidence 12345555666677776666555443 1222 22233333344444444433
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 043480 306 VIEAFCKGGQTRRAYKLFEGMRRR 329 (493)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~ 329 (493)
+|.+.|+-.+|..+++++...
T Consensus 826 ---AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 826 ---AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred ---HHHHhcchHHHHHHHHHhhhh
Confidence 445556666677777666543
No 211
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.14 E-value=0.078 Score=41.14 Aligned_cols=129 Identities=16% Similarity=0.087 Sum_probs=79.3
Q ss_pred CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCC---CCCCHhhH
Q 043480 332 ELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQG---ITPDVISY 408 (493)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~ 408 (493)
.|+...--.+..+....|+..+|...|++...--+..|....-.+.++....+++..|...++.+.+.. -.|| ..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 355555556666777777777777777776654455666666677777777777777777777766542 1222 33
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043480 409 NALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWD 464 (493)
Q Consensus 409 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 464 (493)
-.+.+.+...|.+..|..-|+...+. -|+...-......+.+.|+.+++..-+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 44566677777777777777777664 3444443344455666666555544333
No 212
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.14 E-value=0.015 Score=42.90 Aligned_cols=84 Identities=13% Similarity=0.089 Sum_probs=48.4
Q ss_pred CHHhHHHHHHHHHccCCHhHHHHHHHHHHhC---------------CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 369 DRILYTTIIDCLCKSREIGTAYGVFLDMVEQ---------------GITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
|..++..++.++++.|+.+....+++..-.- ...|+..+..+++.+|+..|++..|+++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3456777777778888877777777655311 1234555555555666555666666665555532
Q ss_pred -cCCCCCHHHHHHHHHHHHh
Q 043480 434 -RGAHPDEVTFKLLIGGLVQ 452 (493)
Q Consensus 434 -~~~~p~~~~~~~l~~~~~~ 452 (493)
.+++.+..+|..|+.-+..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHH
Confidence 3444455555555544433
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.13 E-value=0.11 Score=42.63 Aligned_cols=49 Identities=10% Similarity=0.002 Sum_probs=30.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 043480 411 LINGLCKSSRVSEAMHLYEEMQIRGAHP--DEVTFKLLIGGLVQEKKLELA 459 (493)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a 459 (493)
+...|.+.|.+..|..-++.+++.-... .......++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 4566777788888888777776642111 134556667777777776644
No 214
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.10 E-value=0.24 Score=46.07 Aligned_cols=132 Identities=11% Similarity=0.064 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGL 89 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 89 (493)
..|..++.---...+.+.+..+++.++.. .|.----|......-.+.|..+.+.++|++.+.. ++.+...|...+.-+
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFL 123 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 34444554444444556677777777754 2333334556666666788889999999988763 566666776666555
Q ss_pred hc-cCChhhHHHHHHHHHHHHHHHHHHHHhC-CC-CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 90 CE-VKNFTLINILLDNMDKLALEVFHKMVSK-GR-EPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 90 ~~-~~~~~~a~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
.. .|+.+ ...+.|+..... |. -.+...|...|..-..++++.....+|++.++.
T Consensus 124 ~n~~~d~~-----------~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 124 KNNNGDPE-----------TLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred hccCCCHH-----------HHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 44 34442 334444444432 21 124456888888888888899999999988874
No 215
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.10 E-value=0.0065 Score=52.95 Aligned_cols=133 Identities=12% Similarity=0.003 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----HhCCC-CCCHHhHHHHHHHHHccCCHhHHHHHHHHHH----hCCC-CCCHh
Q 043480 337 TFTILIKAFLREGSSAMAEKLLNQM----RGMNL-SPDRILYTTIIDCLCKSREIGTAYGVFLDMV----EQGI-TPDVI 406 (493)
Q Consensus 337 ~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~p~~~ 406 (493)
.|..+...|.-.|+++.|+...+.- ++.|- ......+..+..++.-.|+++.|.+.|+... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4556666666778899888765432 22221 1234577888899999999999999887654 2221 22345
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 407 SYNALINGLCKSSRVSEAMHLYEEMQI----RG-AHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
..-+|...|.-..++++|+.++.+-.. .+ ..-....+.+|..++...|..+.|..+.+..++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 566788888888899999988876422 11 1125678889999999999999999998887765
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.09 E-value=0.00055 Score=46.01 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=43.9
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhC----CC-CC-ChhhHHHHHHHHHhcCChhHHHHHHHHhc
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQS----NC-RV-FSIDYNRFIGVLIRHSRFDLVQFYYQQMH 71 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 71 (493)
.-..+|+.+...|.+.|++++|++.|+++.+. |. .+ ...++..+..++...|++++|++.+++..
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566788888888888888888888876642 11 11 14456667777777888888877777654
No 217
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.07 E-value=0.0015 Score=37.90 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFI 51 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 51 (493)
|.++..+...|.+.|++++|+++|+++++.. |.|+..|..+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La 42 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALA 42 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhh
Confidence 3467788888888888888888888888876 66666666554
No 218
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.3 Score=46.62 Aligned_cols=113 Identities=13% Similarity=0.134 Sum_probs=87.6
Q ss_pred cCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043480 333 LDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALI 412 (493)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 412 (493)
...-+.+--+.-+...|+-.+|.++-.+.+ -|+...|..-+.+++..+++++-+++-+... .+.-|....
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 344455666667778899999999888777 6899999999999999999988777655443 246688889
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043480 413 NGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWD 464 (493)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 464 (493)
.+|.+.|+.++|.+++-+.... . -...+|.+.|++.+|.+.--
T Consensus 752 e~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHH
Confidence 9999999999999998775331 1 46778889999888876543
No 219
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.00 E-value=0.33 Score=45.99 Aligned_cols=212 Identities=9% Similarity=-0.009 Sum_probs=95.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCC
Q 043480 41 RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKG 120 (493)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g 120 (493)
.|.+..|..+...-...-.++-|...|-+... -+.......|-..+++.-+..+....+.+. ++|.+++-++-+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~f-eeaek~yld~dr-- 762 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEF-EEAEKLYLDADR-- 762 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcch-hHhhhhhhccch--
Confidence 46677888877766666666667666655543 223322222222222111111100111110 333333333321
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHH
Q 043480 121 REPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG-IKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYN 199 (493)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 199 (493)
-...+..+.+.|++-...++++.--... -..-..++..+...+.....|++|.+.+..... ..
T Consensus 763 -------rDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e 826 (1189)
T KOG2041|consen 763 -------RDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TE 826 (1189)
T ss_pred -------hhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hH
Confidence 1223444555566555555443211100 000123455555555555555555555544321 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 043480 200 ALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSN 279 (493)
Q Consensus 200 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 279 (493)
..+.++.+..++++-..+.+.+ +.+....-.+..++.+.|.-++|.+.+-+... | ...+..|...+
T Consensus 827 ~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~Ln 892 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELN 892 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHH
Confidence 2344444444444443333332 44455555666777777777777665543221 1 12344555666
Q ss_pred CHHHHHHHH
Q 043480 280 QLDKAYMFM 288 (493)
Q Consensus 280 ~~~~a~~~~ 288 (493)
++.+|.++-
T Consensus 893 QW~~avela 901 (1189)
T KOG2041|consen 893 QWGEAVELA 901 (1189)
T ss_pred HHHHHHHHH
Confidence 666665543
No 220
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.91 E-value=0.29 Score=43.87 Aligned_cols=411 Identities=13% Similarity=0.116 Sum_probs=223.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH--HHhcCChhHHHHHHHHhccC--CCC----------
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGV--LIRHSRFDLVQFYYQQMHPL--GFS---------- 76 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~--~~~---------- 76 (493)
..+.++++|.- ++++.....+.+..+.. + ...|..+..+ +-+.+.+.+|++.+..-... +..
T Consensus 48 l~grilnAffl-~nld~Me~~l~~l~~~~-~--~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~ 123 (549)
T PF07079_consen 48 LGGRILNAFFL-NNLDLMEKQLMELRQQF-G--KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ 123 (549)
T ss_pred HhhHHHHHHHH-hhHHHHHHHHHHHHHhc-C--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence 34566777765 56677666666666643 2 3445555544 45788999998887766543 211
Q ss_pred --cChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc--------CCHHHHHH
Q 043480 77 --LTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKA--------KEFDKAVQ 146 (493)
Q Consensus 77 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--------~~~~~a~~ 146 (493)
+|...-+..+.++...|.+.+++.+++++ +..+..+....+..+|+.++-.+++. ...+-+.+
T Consensus 124 l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i-------~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pd 196 (549)
T PF07079_consen 124 LFSDFFLDEIEAHSLIETGRFSEGRAILNRI-------IERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPD 196 (549)
T ss_pred HhhHHHHHHHHHHHHHhcCCcchHHHHHHHH-------HHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChH
Confidence 12223355667888999998888666543 44444444667888999866555543 11111222
Q ss_pred HH-------HHHHHC------CCCCCHHhHHHHHHHHhcc--CchhHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCC
Q 043480 147 AW-------EHMIEN------GIKPDNKACAALVVGLCGD--GKVDLAYELTVGAMKGKVEFGVL-IYNALISGFCRTGR 210 (493)
Q Consensus 147 ~~-------~~~~~~------~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 210 (493)
.| ++|... .+.|.......++....-. .+..--.+++......-+.|+.. +...+...+.+ +
T Consensus 197 yYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~ 274 (549)
T PF07079_consen 197 YYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--D 274 (549)
T ss_pred HHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--C
Confidence 22 222211 1233333334443333221 12222223333322322334332 22334444433 4
Q ss_pred HHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHH-------HHHHHHHc-c
Q 043480 211 IRRAMAIKSFMKWNGC----EPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYN-------QLLKGLCN-S 278 (493)
Q Consensus 211 ~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~-~ 278 (493)
.+++..+-+.+....+ +.=..+|..++....+.++...|.+.+..+.-. .|+...-. .+-+..+. .
T Consensus 275 ~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD 352 (549)
T PF07079_consen 275 PEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDD 352 (549)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcch
Confidence 5555555554443321 122457888888999999999999988877653 24332211 11222221 1
Q ss_pred C---CHHHHHHHHHHHHHcCCCCChhhHHHHH---HHHHHcCC-HHHHHHHHHHHHHcCCCcCHhHHHHHH----HHHH-
Q 043480 279 N---QLDKAYMFMVKKMEAKGLRDKVSYNTVI---EAFCKGGQ-TRRAYKLFEGMRRRGIELDVVTFTILI----KAFL- 346 (493)
Q Consensus 279 ~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~- 346 (493)
. +...-+.+|......... .......++ .-+-+.|. -++|+++++.+.+-. +-|...-+.+. .+|.
T Consensus 353 ~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~q 430 (549)
T PF07079_consen 353 ESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQ 430 (549)
T ss_pred HHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHH
Confidence 1 122223334333332211 111112222 23444555 788999999888641 22333333322 2232
Q ss_pred --HcCCHHHHHHHHHHHHhCCCCCCHH----hHHHHHHH--HHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 043480 347 --REGSSAMAEKLLNQMRGMNLSPDRI----LYTTIIDC--LCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKS 418 (493)
Q Consensus 347 --~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 418 (493)
....+..-..+-+-+.+.|++|-.. .-|.+.++ +...|++..+.-.-.-+.+ +.|++.+|..+.-++...
T Consensus 431 aLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~ 508 (549)
T PF07079_consen 431 ALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMEN 508 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHH
Confidence 2344555666666667788776443 34444443 3467899988766555554 689999999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHH
Q 043480 419 SRVSEAMHLYEEMQIRGAHPDEVTFKL 445 (493)
Q Consensus 419 g~~~~a~~~~~~~~~~~~~p~~~~~~~ 445 (493)
.++++|..++..+ +|+..+++.
T Consensus 509 k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 509 KRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred hhHHHHHHHHHhC-----CCchhhHHH
Confidence 9999999999884 566666554
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.91 E-value=0.005 Score=55.11 Aligned_cols=69 Identities=9% Similarity=-0.140 Sum_probs=58.4
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS---IDYNRFIGVLIRHSRFDLVQFYYQQMHPL 73 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (493)
..|.++..++.+..+|.+.|++++|+..|++.++.+ |.+. .+|..+..+|...|+.++|+..+++.++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457788899999999999999999999999998876 3333 35888999999999999999999998874
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.82 E-value=0.0074 Score=40.42 Aligned_cols=63 Identities=22% Similarity=0.216 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 406 ISYNALINGLCKSSRVSEAMHLYEEMQIR--GAH---PD-EVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
.+++.+...|...|++++|+..|++..+. ... |+ ..++..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666667777777777777777766432 011 11 45666677777777777777777777653
No 223
>PRK15331 chaperone protein SicA; Provisional
Probab=96.81 E-value=0.15 Score=39.10 Aligned_cols=88 Identities=9% Similarity=-0.026 Sum_probs=61.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 043480 344 AFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSE 423 (493)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 423 (493)
-+...|++++|..+|.-+.-.+ +.+..-|..|..++-..++++.|...|......+. -|+..+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 3456788888888888777655 45566677777777777888888888877665432 244444556777778888888
Q ss_pred HHHHHHHHHH
Q 043480 424 AMHLYEEMQI 433 (493)
Q Consensus 424 a~~~~~~~~~ 433 (493)
|+..|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 8888877766
No 224
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.71 E-value=0.046 Score=40.29 Aligned_cols=82 Identities=15% Similarity=0.084 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHH---------------hCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHh-C
Q 043480 336 VTFTILIKAFLREGSSAMAEKLLNQMR---------------GMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVE-Q 399 (493)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~ 399 (493)
.++..++.++++.|+.+....+++..- .....|+..+..+++.+|+..|++..|.++++.+.+ .
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344455555555555555555444332 123468888999999999999999999999988874 4
Q ss_pred CCCCCHhhHHHHHHHHHh
Q 043480 400 GITPDVISYNALINGLCK 417 (493)
Q Consensus 400 ~~~p~~~~~~~l~~~~~~ 417 (493)
+++.+..+|..|+.-...
T Consensus 83 ~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 677777888888875443
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.69 E-value=0.42 Score=42.59 Aligned_cols=78 Identities=6% Similarity=-0.070 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHc---cCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 043480 198 YNALISGFCRTGRIRRAMAIKSFMKWNG---CEPDLVTYNAILNYYCD---EVMLDEAEKLVMEMESCGIEPDVYSYNQL 271 (493)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 271 (493)
...++-+|....+++...++.+.+.... +......-....-++.+ .|+.++|.+++..+....-.+++.++..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3345555666666666666666666431 11111212223333444 66677777776665444445566666655
Q ss_pred HHHH
Q 043480 272 LKGL 275 (493)
Q Consensus 272 ~~~~ 275 (493)
.+.|
T Consensus 224 GRIy 227 (374)
T PF13281_consen 224 GRIY 227 (374)
T ss_pred HHHH
Confidence 5443
No 226
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.67 E-value=0.14 Score=37.29 Aligned_cols=139 Identities=11% Similarity=0.154 Sum_probs=79.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHH
Q 043480 312 KGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYG 391 (493)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 391 (493)
-.|..++..++..+..... +..-++.++--....-+-+-..+.++.+-+ -.| ...+|++.....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFD----------is~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFD----------ISKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-----------GGG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcC----------chhhcchHHHHH
Confidence 3567777777777766542 344444444333333333333333333322 111 123455555544
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 043480 392 VFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGF 471 (493)
Q Consensus 392 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 471 (493)
.+-.+- .+...+...+..+...|+-+.-.++...+.+ +-.+++.....+..+|.+.|+..++.+++.++.+.|+
T Consensus 78 C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 443321 2344566777888889999999999988865 3467899999999999999999999999999999886
Q ss_pred C
Q 043480 472 T 472 (493)
Q Consensus 472 ~ 472 (493)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
No 227
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.62 E-value=0.16 Score=36.90 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=20.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCC
Q 043480 344 AFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQG 400 (493)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 400 (493)
.....|..+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.++-+.|
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3333444444444444443322 3344444444444444444444444444444433
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.60 E-value=0.5 Score=42.37 Aligned_cols=115 Identities=17% Similarity=0.312 Sum_probs=84.2
Q ss_pred HhHHHHHHHHHccCCHhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHH
Q 043480 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQG-ITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTF-KLLIG 448 (493)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~ 448 (493)
.+|-..+..-.+..-++.|..+|-++.+.| +.+++.++++++.-+ ..|+...|.++|+--... .||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456667777777788999999999999888 677888889888755 468899999999987664 3454444 56677
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhch
Q 043480 449 GLVQEKKLELACRLWDQMMEKGFTLD--KTVSAALIEAIHLQD 489 (493)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~ 489 (493)
-+...++-+.|..+|+..+.+ +..+ ..+|...+.-=..-|
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G 516 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVG 516 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhc
Confidence 888899999999999977653 2223 456666665444433
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.60 E-value=0.028 Score=50.50 Aligned_cols=99 Identities=11% Similarity=0.008 Sum_probs=72.7
Q ss_pred CCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 043480 367 SPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDV----ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVT 442 (493)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 442 (493)
+.+...++.+..+|...|++++|...|++.++. .|+. .+|..+..+|...|+.++|+..+++..+.+ .| .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 556788999999999999999999999999986 5553 358999999999999999999999998842 11 2
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHHHHHcCC
Q 043480 443 FKLLIG--GLVQEKKLELACRLWDQMMEKGF 471 (493)
Q Consensus 443 ~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~ 471 (493)
|..+.. .+....+.++..++++.+.+-|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 221111 11122344567777777777664
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.60 E-value=0.45 Score=41.81 Aligned_cols=116 Identities=10% Similarity=0.040 Sum_probs=64.4
Q ss_pred HcCChhHHHHHHHHHhhCCCCCChhhHHHHHH--HHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHH----HhccCC
Q 043480 21 KAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIG--VLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISG----LCEVKN 94 (493)
Q Consensus 21 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~~~ 94 (493)
..|+-..|+++-.+..+. +..|......++. +-.-.|+++.|.+-|+.|.. ++.+-..=+++ -.+.|+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhccc
Confidence 346777777776655432 2333444444443 33446888888888888865 22222222222 234566
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 95 FTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 95 ~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
.+.| ...-++.... -+.-...+...+...+..|+++.|+++.+.-+..
T Consensus 170 reaA-----------r~yAe~Aa~~-Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 170 REAA-----------RHYAERAAEK-APQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHH-----------HHHHHHHHhh-ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 6333 3333333332 1223567777788888888888888888766543
No 231
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.3 Score=39.87 Aligned_cols=91 Identities=15% Similarity=-0.019 Sum_probs=52.0
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHH
Q 043480 163 CAALVVGLCGDGKVDLAYELTVGAMKG----KVEFG-VLIYNALISGFCRTGRIRRAMAIKSFMKWNG---CEPDLVTYN 234 (493)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 234 (493)
+....+.+.+..++++|-..+.+-... .--++ -..|...|-.+....++..|.+.++...+.+ -+.+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 444455566666666665544432211 00111 1235556666777778888888888754432 234566777
Q ss_pred HHHHHHHccCChHHHHHHHH
Q 043480 235 AILNYYCDEVMLDEAEKLVM 254 (493)
Q Consensus 235 ~ll~~~~~~~~~~~a~~~~~ 254 (493)
.|+.+| ..|+.+++..++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHh-ccCCHHHHHHHHc
Confidence 777766 5677777666554
No 232
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.47 E-value=0.76 Score=42.94 Aligned_cols=381 Identities=9% Similarity=0.015 Sum_probs=198.9
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH-hcCChhHHHHHHHHhccC-CC-CcChhh
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLI-RHSRFDLVQFYYQQMHPL-GF-SLTPFT 81 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~-~~~~~~ 81 (493)
.|.--..|...+..=.+-|..+.+.++|++..+. +|.+...|......+. ..|+.+.....|+.+... |. -.....
T Consensus 75 yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~l 153 (577)
T KOG1258|consen 75 YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPL 153 (577)
T ss_pred CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHH
Confidence 3344445566666667889999999999998875 6788888888776544 567888888999988764 21 123346
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh---cc------CCHHHHHHHHHHHH
Q 043480 82 YSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLC---KA------KEFDKAVQAWEHMI 152 (493)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~---~~------~~~~~a~~~~~~~~ 152 (493)
|...+.---.++++.. ...+++++++. ....|+..-.-|. .. ..++++.++-....
T Consensus 154 Wdkyie~en~qks~k~-----------v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~ 218 (577)
T KOG1258|consen 154 WDKYIEFENGQKSWKR-----------VANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVA 218 (577)
T ss_pred HHHHHHHHhccccHHH-----------HHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHH
Confidence 7777777777778844 44555555432 1112221111111 11 11222222221111
Q ss_pred HC----CCCCCHHhHHHHHHHHh-ccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--
Q 043480 153 EN----GIKPDNKACAALVVGLC-GDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNG-- 225 (493)
Q Consensus 153 ~~----~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 225 (493)
.. -..+.......-+.-.. ..+..+++........ ...-..+............++.-.+..
T Consensus 219 ~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~~~~~kr~~fE~~IkrpYf 287 (577)
T KOG1258|consen 219 ERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSEEEEEKRWGFEEGIKRPYF 287 (577)
T ss_pred hhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhHhHHHHHHhhhhhcccccc
Confidence 10 00011111111111110 1111222222111111 011112222333334444444443321
Q ss_pred -----CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh
Q 043480 226 -----CEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDK 300 (493)
Q Consensus 226 -----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 300 (493)
.+++..+|..-+..-...|+.+.+.-+++...-. +..-...|-..+.-....|+.+-+..++....+......+
T Consensus 288 hvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~ 366 (577)
T KOG1258|consen 288 HVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP 366 (577)
T ss_pred ccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc
Confidence 1334567888888888889999888888887521 1112234444455555558888887776665554333222
Q ss_pred hhHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCcCHhH-HHHHHHHHHHcCCHHHHH---HHHHHHHhCCCCCCHHhHHH
Q 043480 301 VSYNTVIEAF-CKGGQTRRAYKLFEGMRRRGIELDVVT-FTILIKAFLREGSSAMAE---KLLNQMRGMNLSPDRILYTT 375 (493)
Q Consensus 301 ~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~ 375 (493)
. ...+-..+ -..|++..|..+++.+...- |+..- -..-+....+.|+.+.+. .++...... ..+..+...
T Consensus 367 ~-i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~ 441 (577)
T KOG1258|consen 367 I-IHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEK 441 (577)
T ss_pred H-HHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHH
Confidence 2 22222222 33578999999999888763 44322 222233445677777776 333333321 122222222
Q ss_pred HHHH-----HHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 043480 376 IIDC-----LCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSS 419 (493)
Q Consensus 376 l~~~-----~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 419 (493)
+.-- +.-.++.+.|..++.++.+. ++++...|..+++.....+
T Consensus 442 l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 442 LYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 2221 23357888899999998886 6777788888887766555
No 233
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.45 E-value=0.53 Score=40.86 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=79.0
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCChhhHHH-------HHHHHHhcC-ChhHHHHHHHHhccC--------CCCcCh---
Q 043480 19 LVKAGLIDQAVHVFDEMTQSNCRVFSIDYNR-------FIGVLIRHS-RFDLVQFYYQQMHPL--------GFSLTP--- 79 (493)
Q Consensus 19 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--- 79 (493)
..++|+++.|..++.++.......++..... ++......+ +++.|..++++..+. ...++.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 4678999999999998876431222222222 233334556 888887777776543 112332
Q ss_pred --hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 80 --FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 80 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
.++..++.++...+..+.. ++|..+++.+... .+-.+..+..-+..+.+.++.+.+.+.+.+|+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~--------~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESV--------EKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHH--------HHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3556666777766666433 4567777777554 2223555555666777778888888888888875
No 234
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.45 E-value=0.29 Score=42.44 Aligned_cols=232 Identities=11% Similarity=0.026 Sum_probs=132.2
Q ss_pred HhcCChhHHHHHHHHhccCC--CCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCC-CCCCHhhHHHH
Q 043480 55 IRHSRFDLVQFYYQQMHPLG--FSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKG-REPDVVTYTIV 131 (493)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l 131 (493)
..+.+.++|+..|.+-+..- ......++..+..+.+..|.++.+. ..|....+...+.. ..---.+|..+
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL-------~~a~sqi~~a~~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML-------KFAVSQIDTARELEDSDFLLEAYLNL 89 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666665554420 0112235556666667777665554 23333322222210 00113456667
Q ss_pred HHHHhccCCHHHHHHHHHHHHHC-CCCC---CHHhHHHHHHHHhccCchhHHHHHHHHHHhCC-----CCCChhhHHHHH
Q 043480 132 IDGLCKAKEFDKAVQAWEHMIEN-GIKP---DNKACAALVVGLCGDGKVDLAYELTVGAMKGK-----VEFGVLIYNALI 202 (493)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~ 202 (493)
.+++-+.-++.+++.+-+.-... |..| .-.....+..++...+.++.+++.|+...+.. ......++..|-
T Consensus 90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg 169 (518)
T KOG1941|consen 90 ARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLG 169 (518)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence 77777777777777766655432 2222 11334456677777788888888888876522 122345778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHH-----HHHHHHHccCChHHHHHHHHHHH----HCCCCC-ChhhH
Q 043480 203 SGFCRTGRIRRAMAIKSFMKW----NGCEPDLVTYN-----AILNYYCDEVMLDEAEKLVMEME----SCGIEP-DVYSY 268 (493)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~ 268 (493)
+.|.+..++++|.-...+... .++..=..-|. .+.-++...|....|.+..++.. ..|-.+ .....
T Consensus 170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 888888998888766555432 22211111222 23345566777777777776654 333222 12334
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH
Q 043480 269 NQLLKGLCNSNQLDKAYMFMVKKME 293 (493)
Q Consensus 269 ~~l~~~~~~~~~~~~a~~~~~~~~~ 293 (493)
..+.+.|...|+.+.|+.-|+.++.
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHH
Confidence 5667888889999999888887765
No 235
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.40 E-value=0.45 Score=39.46 Aligned_cols=80 Identities=14% Similarity=0.237 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhh---HHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSID---YNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
..|+ =+..-.+.|++++|.+.|+.+.... |.++.+ ...++-++-+.++++.|+...++.+..-+......|...|
T Consensus 36 ~LY~-~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 36 ELYN-EGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3454 4455678899999999999998764 555444 3445567789999999999999998875444444566666
Q ss_pred HHHhc
Q 043480 87 SGLCE 91 (493)
Q Consensus 87 ~~~~~ 91 (493)
.+++.
T Consensus 114 kgLs~ 118 (254)
T COG4105 114 KGLSY 118 (254)
T ss_pred HHHHH
Confidence 66653
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.39 E-value=0.3 Score=45.88 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=21.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhh
Q 043480 448 GGLVQEKKLELACRLWDQMMEK---GFTLDKTVSAALIEAIHL 487 (493)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~ 487 (493)
+++.+.++...-...+...... ...+|......++.+.+.
T Consensus 423 Ng~~~~~~~~l~~~~~~~l~~~~~~~~~~De~~l~~lL~g~~l 465 (468)
T PF10300_consen 423 NGFPRMPKEELEIKSLLELEESKNSEEDPDERALRHLLKGACL 465 (468)
T ss_pred hccccCChHHHHHHHHHHHHhcccccCCccHHHHHHHHHHHHh
Confidence 4444444433332344444332 245788888888877553
No 237
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.38 E-value=0.16 Score=36.81 Aligned_cols=87 Identities=14% Similarity=-0.035 Sum_probs=65.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChh---hHHHHHHHHhc
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPF---TYSRFISGLCE 91 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~ 91 (493)
-..+....|+++.|++.|.+.+..- |..++.||.-..++.-+|+.++|+.=+++.++..-..+.. .|..-...|..
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3567889999999999999998874 7778999999999999999999999999998763222322 23333344666
Q ss_pred cCChhhHHHHH
Q 043480 92 VKNFTLINILL 102 (493)
Q Consensus 92 ~~~~~~a~~~~ 102 (493)
.|+.+.|+.-|
T Consensus 128 ~g~dd~AR~DF 138 (175)
T KOG4555|consen 128 LGNDDAARADF 138 (175)
T ss_pred hCchHHHHHhH
Confidence 78885544333
No 238
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.38 E-value=0.68 Score=41.34 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 443 FKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 443 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
+.+++.++.-.|+++.|.+..++|.+.
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 344555555666666666666666554
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.23 Score=43.85 Aligned_cols=97 Identities=18% Similarity=0.051 Sum_probs=68.1
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 043480 125 VVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISG 204 (493)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (493)
..+++.+..++.+.+++..|++..++.+..+ ++|...+..-..++...|+++.|+..|+.+.+.. +-|-.+-+.++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4467778888888889999998888888765 4577888888888888888888888888888764 3344455555555
Q ss_pred HHhcCCHHH-HHHHHHHHHH
Q 043480 205 FCRTGRIRR-AMAIKSFMKW 223 (493)
Q Consensus 205 ~~~~~~~~~-a~~~~~~~~~ 223 (493)
-.+.....+ ..++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 444444333 3556666653
No 240
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.20 E-value=0.96 Score=41.30 Aligned_cols=427 Identities=9% Similarity=0.028 Sum_probs=205.5
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH-HHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGV-LIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
.+++.|+..|...+..+-+.+.+.+.-.+|.+|+... |.++..|-.-..- +-.+.+++.|..+|.+.++.+ +.++..
T Consensus 99 ~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~L 176 (568)
T KOG2396|consen 99 NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKL 176 (568)
T ss_pred HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHH
Confidence 4677899999999988888888999999999999885 7778888766644 444556899999999988765 445555
Q ss_pred HHHHHHHHhccCC-hhhHHHHHHHH-------HHHHHHHHHHHHhCCCCCCHh--hHHHHH---HHHhccCCHHHH-HHH
Q 043480 82 YSRFISGLCEVKN-FTLINILLDNM-------DKLALEVFHKMVSKGREPDVV--TYTIVI---DGLCKAKEFDKA-VQA 147 (493)
Q Consensus 82 ~~~ll~~~~~~~~-~~~a~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~--~~~~l~---~~~~~~~~~~~a-~~~ 147 (493)
|...++.-..--. ...-...++.. .+.....+.. ..++.. .+..-- ..........+- ..+
T Consensus 177 w~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~-----~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i 251 (568)
T KOG2396|consen 177 WKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWIN-----YANSVDIIKGAVKSVELSVAEKFDFLKELQKNI 251 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHh-----hccchhhhhcchhhcchHHHHHHHHHHHHHHHH
Confidence 5554443211000 00000000000 0000000000 000110 000000 000000000000 011
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043480 148 WEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCE 227 (493)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (493)
.+.+... .+.++.++.. .|.+.++-.......+ +...-....-..+.+....+|+...+. .
T Consensus 252 ~d~~~~~-~~~np~~~~~------------laqr~l~i~~~tdl~~----~~~~~~~~~~~~k~s~~~~v~ee~v~~--l 312 (568)
T KOG2396|consen 252 IDDLQSK-APDNPLLWDD------------LAQRELEILSQTDLQH----TDNQAKAVEVGSKESRCCAVYEEAVKT--L 312 (568)
T ss_pred HHHHhcc-CCCCCccHHH------------HHHHHHHHHHHhhccc----hhhhhhchhcchhHHHHHHHHHHHHHH--h
Confidence 1222211 1112222222 2222222222111111 111111111112233344666666654 5
Q ss_pred CCHHHHHHHHHHHHccC------ChHHHHHHHHHHHHCC-C-CCChhhHHHHHHHHHccCCHHH-HHHHHHHHHHcCCCC
Q 043480 228 PDLVTYNAILNYYCDEV------MLDEAEKLVMEMESCG-I-EPDVYSYNQLLKGLCNSNQLDK-AYMFMVKKMEAKGLR 298 (493)
Q Consensus 228 ~~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~ 298 (493)
|+...|+..|..|...- .+.....+++.....+ . +.....|..+.-.+.......+ |..+..+... .
T Consensus 313 ~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~----~ 388 (568)
T KOG2396|consen 313 PTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFR----D 388 (568)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhc----c
Confidence 66666777776665332 3334444555444332 2 2234455555555555544332 2222222222 2
Q ss_pred ChhhHHHHHHHHHHcC-CHH-HHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCC-HHHH--HHHHHHHHhCCCCCCHHh-
Q 043480 299 DKVSYNTVIEAFCKGG-QTR-RAYKLFEGMRRRGIELDVVTFTILIKAFLREGS-SAMA--EKLLNQMRGMNLSPDRIL- 372 (493)
Q Consensus 299 ~~~~~~~l~~~~~~~~-~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a--~~~~~~~~~~~~~~~~~~- 372 (493)
+...|..-++...+.. +++ .-.+++......-..+....|+... .|+ .... ..++....+.+ .|+..+
T Consensus 389 s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl 462 (568)
T KOG2396|consen 389 SGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVTL 462 (568)
T ss_pred hHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceeeh
Confidence 4445554444444221 221 1122233333321122222232222 222 1111 12333334443 344443
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--hcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHH
Q 043480 373 YTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLC--KSSRVSEAMHLYEEMQI-RGAHPDEVTFKLLIGG 449 (493)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~ 449 (493)
-+.++..+...|-.+.|...+..+... .+|+...|..++..-. .+-+...+..+++.|.. .| .|+..|...+.-
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKE 539 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHh
Confidence 366777788888899999999998876 4667777777765322 12237778888888854 45 578888888877
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 043480 450 LVQEKKLELACRLWDQMME 468 (493)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~ 468 (493)
-...|..+.+-.++-++.+
T Consensus 540 e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 540 ELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hccCCCcccccHHHHHHHH
Confidence 7788888888887777765
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.13 E-value=0.22 Score=41.56 Aligned_cols=97 Identities=19% Similarity=0.191 Sum_probs=66.3
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CC-CHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGI--TPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGA-HP-DEVTFKLLI 447 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p-~~~~~~~l~ 447 (493)
.|+.-+.. .+.|++..|...|...++... .-....+-.|..++...|++++|..+|..+.+.-. .| -+..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 56655544 456778888888888886521 11123444577888888888888888888765422 12 256777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 043480 448 GGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
....+.|+.++|..+|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8888888888888888888774
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=0.6 Score=38.24 Aligned_cols=208 Identities=13% Similarity=0.082 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 043480 45 IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPD 124 (493)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~ 124 (493)
..|..-..+|....++++|...+.+..+. ...|...|. |...+ ++|.-+.+++.. .+--
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh--------------AAKay----EqaamLake~~k--lsEv 90 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH--------------AAKAY----EQAAMLAKELSK--LSEV 90 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH--------------HHHHH----HHHHHHHHHHHH--hHHH
Confidence 34555566777777888887777766432 122222221 11111 344444555543 1222
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHH--CCCCCCH--HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHH
Q 043480 125 VVTYTIVIDGLCKAKEFDKAVQAWEHMIE--NGIKPDN--KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNA 200 (493)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (493)
+..|+.....|..+|.++.|-..+++.-+ .++.|+. ..|..-+......++...|.+++. .
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~g---------------k 155 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYG---------------K 155 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHH---------------H
Confidence 44667777788888888888777776542 2345553 233333334444444444444443 3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHCC---CCCChhhHHHHH
Q 043480 201 LISGFCRTGRIRRAMAIKSFMKWN----GCEPDL-VTYNAILNYYCDEVMLDEAEKLVMEMESCG---IEPDVYSYNQLL 272 (493)
Q Consensus 201 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~ 272 (493)
.-..+.+...+++|-..+.+-... .--++. ..|...|-.+....++..|...++.-.+.+ -+.+..+...|+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 344566666666654443332211 112232 345566667777889999999999865543 234566777788
Q ss_pred HHHHccCCHHHHHHHHH
Q 043480 273 KGLCNSNQLDKAYMFMV 289 (493)
Q Consensus 273 ~~~~~~~~~~~a~~~~~ 289 (493)
.+| ..|+.+++..++.
T Consensus 236 ~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHh-ccCCHHHHHHHHc
Confidence 776 4577777766543
No 243
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.11 Score=45.72 Aligned_cols=79 Identities=9% Similarity=-0.012 Sum_probs=43.0
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCC---CC-----------CChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSN---CR-----------VFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~---~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
...|.+.|++..|..-|+++...= .. .-...++.+..++.+.+.+.+|++..++.+..+ ++|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 457888899999999888865420 00 011223334444555555555555555555444 444444
Q ss_pred HHHHHHHHhccCCh
Q 043480 82 YSRFISGLCEVKNF 95 (493)
Q Consensus 82 ~~~ll~~~~~~~~~ 95 (493)
.-.-.+++...+++
T Consensus 294 LyRrG~A~l~~~e~ 307 (397)
T KOG0543|consen 294 LYRRGQALLALGEY 307 (397)
T ss_pred HHHHHHHHHhhccH
Confidence 44445555555555
No 244
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.97 E-value=0.38 Score=38.54 Aligned_cols=165 Identities=16% Similarity=0.046 Sum_probs=95.5
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcCh--hhH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTP--FTY 82 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 82 (493)
.|.-+.+||.|.--+...|+++.|.+.|+...+.++..+-...|.-|. +---|+++-|.+-+...-+.+ +.|+ ..|
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LW 172 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDD-PNDPFRSLW 172 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcC-CCChHHHHH
Confidence 456678888888888899999999999999988774443333333332 334688888887777766653 3333 223
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-----
Q 043480 83 SRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIK----- 157 (493)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----- 157 (493)
..+.. ..-++..|. ..+.++... ...+.+.|+.+--.+.+ +. ...+++++....-.
T Consensus 173 LYl~E---~k~dP~~A~----------tnL~qR~~~--~d~e~WG~~iV~~yLgk---iS-~e~l~~~~~a~a~~n~~~A 233 (297)
T COG4785 173 LYLNE---QKLDPKQAK----------TNLKQRAEK--SDKEQWGWNIVEFYLGK---IS-EETLMERLKADATDNTSLA 233 (297)
T ss_pred HHHHH---hhCCHHHHH----------HHHHHHHHh--ccHhhhhHHHHHHHHhh---cc-HHHHHHHHHhhccchHHHH
Confidence 32222 233443222 233333332 22233444433222222 11 12344444432110
Q ss_pred -CCHHhHHHHHHHHhccCchhHHHHHHHHHHhCC
Q 043480 158 -PDNKACAALVVGLCGDGKVDLAYELTVGAMKGK 190 (493)
Q Consensus 158 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 190 (493)
.=..||..+...+...|+.++|..+|+-.+..+
T Consensus 234 e~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 234 EHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 113678889999999999999999999888654
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.89 E-value=0.21 Score=41.70 Aligned_cols=91 Identities=14% Similarity=0.144 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHhccCCC--CcChhhHHHH
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS---IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF--SLTPFTYSRF 85 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l 85 (493)
.|+.-+. +.+.|++.+|...|...++.. |.+. ..+..|...+...|++++|...|..+.+.-. +--+..+..|
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 5765555 667788999999999999874 4443 4466788999999999999999999987631 2234667778
Q ss_pred HHHHhccCChhhHHHHHH
Q 043480 86 ISGLCEVKNFTLINILLD 103 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~ 103 (493)
..+..+.|+.+.|+..++
T Consensus 222 g~~~~~l~~~d~A~atl~ 239 (262)
T COG1729 222 GVSLGRLGNTDEACATLQ 239 (262)
T ss_pred HHHHHHhcCHHHHHHHHH
Confidence 888889999955443333
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.42 Score=41.09 Aligned_cols=153 Identities=9% Similarity=-0.051 Sum_probs=94.5
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhh--H--HHHHHHHHHcCCHH
Q 043480 242 DEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVS--Y--NTVIEAFCKGGQTR 317 (493)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~--~~l~~~~~~~~~~~ 317 (493)
..|++.+|-..++++.+. .|.|...+...-.+|.-.|+.+.-...+++++..-. ++... | ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn-~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN-ADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC-CCCcHHHHHHHHHHhhHHHhccch
Confidence 466777777777777654 456666677777778888888877777777766411 23322 2 22233445678888
Q ss_pred HHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHhHHHHHHHHHccCCHhHHHHHHH
Q 043480 318 RAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM---NLSPDRILYTTIIDCLCKSREIGTAYGVFL 394 (493)
Q Consensus 318 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 394 (493)
+|++.-++..+-+ +.|...-.+....+-..|++.++.+...+-... +.-.-...|-...-.+...+.++.|+.+|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888887777654 336666667777777778888877766543321 101111233344445566678888888887
Q ss_pred HHH
Q 043480 395 DMV 397 (493)
Q Consensus 395 ~~~ 397 (493)
.-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 644
No 247
>PRK11906 transcriptional regulator; Provisional
Probab=95.81 E-value=1.2 Score=40.70 Aligned_cols=152 Identities=7% Similarity=-0.015 Sum_probs=95.8
Q ss_pred hhHHHHHHHHhccC-CCCcC-hhhHHHHHHHHhcc---C--ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043480 60 FDLVQFYYQQMHPL-GFSLT-PFTYSRFISGLCEV---K--NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVI 132 (493)
Q Consensus 60 ~~~a~~~~~~~~~~-~~~~~-~~~~~~ll~~~~~~---~--~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 132 (493)
.+.|..+|.+.... ...|+ ...|..+..++... | +.+.+. ..|.+..++.++.+ +.|..+...+.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~-------~~a~~~A~rAveld-~~Da~a~~~~g 345 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAA-------QKALELLDYVSDIT-TVDGKILAIMG 345 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHH-------HHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 46778888888722 22343 34444444443322 1 222222 56777777777763 55777777777
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHhccCchhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCC
Q 043480 133 DGLCKAKEFDKAVQAWEHMIENGIKPD-NKACAALVVGLCGDGKVDLAYELTVGAMKGKV-EFGVLIYNALISGFCRTGR 210 (493)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 210 (493)
.+..-.++++.|..+|++....+ || ..++........-.|+.++|.+.++...+..+ .....+....+..|+.++
T Consensus 346 ~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~- 422 (458)
T PRK11906 346 LITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP- 422 (458)
T ss_pred HHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-
Confidence 77788888999999999988763 44 45666666667778999999999998776531 112233334444666554
Q ss_pred HHHHHHHHHHHH
Q 043480 211 IRRAMAIKSFMK 222 (493)
Q Consensus 211 ~~~a~~~~~~~~ 222 (493)
.++|.++|-+-.
T Consensus 423 ~~~~~~~~~~~~ 434 (458)
T PRK11906 423 LKNNIKLYYKET 434 (458)
T ss_pred hhhhHHHHhhcc
Confidence 577777665433
No 248
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.80 E-value=0.38 Score=44.48 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=28.4
Q ss_pred CHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043480 159 DNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWN 224 (493)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (493)
+...|..|......+|+++.|.+.|.+..+ +..|+-.|.-.|+.+...++.+.....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 444555555555555555555555554432 344444555555555555555544444
No 249
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.78 E-value=0.36 Score=44.69 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=37.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 043480 334 DVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALIN 413 (493)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 413 (493)
+...|..|.......|+++-|++.|.+... +..++-.|...|+.+.-.++.+.....| -++....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~ 410 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQ 410 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHH
Confidence 444555555555555555555555544432 3344444455555555544444444432 1233333
Q ss_pred HHHhcCChhHHHHHHHH
Q 043480 414 GLCKSSRVSEAMHLYEE 430 (493)
Q Consensus 414 ~~~~~g~~~~a~~~~~~ 430 (493)
++...|+.++..+++.+
T Consensus 411 ~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 411 AALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHT-HHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 44444555554444433
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.76 E-value=0.31 Score=36.45 Aligned_cols=83 Identities=8% Similarity=0.121 Sum_probs=60.1
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS---IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
++..+-.-+....+.|++++|++.|+.+..+- |.+. ..-..++.++.+.+++++|...+++.++..+.....-|..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 34444456777888999999999999998863 4433 3455677889999999999999999998864433445555
Q ss_pred HHHHHhc
Q 043480 85 FISGLCE 91 (493)
Q Consensus 85 ll~~~~~ 91 (493)
.+.+++.
T Consensus 88 Y~~gL~~ 94 (142)
T PF13512_consen 88 YMRGLSY 94 (142)
T ss_pred HHHHHHH
Confidence 5555544
No 251
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.76 E-value=0.098 Score=44.31 Aligned_cols=78 Identities=14% Similarity=0.188 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhcc-----CCCCcChhhHHH
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHP-----LGFSLTPFTYSR 84 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 84 (493)
.++..++..+...|+++.+...+++....+ |.+...|..++.+|.+.|+...|+..|+++.+ .|+.|.+.+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 357788999999999999999999999997 88899999999999999999999999998866 377787777666
Q ss_pred HHHH
Q 043480 85 FISG 88 (493)
Q Consensus 85 ll~~ 88 (493)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 252
>PRK11906 transcriptional regulator; Provisional
Probab=95.72 E-value=0.83 Score=41.62 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=108.4
Q ss_pred HHHHHHHHHc-----CCHHHHHHHHHHHHHc-CCCcC-HhHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCC
Q 043480 304 NTVIEAFCKG-----GQTRRAYKLFEGMRRR-GIELD-VVTFTILIKAFLR---------EGSSAMAEKLLNQMRGMNLS 367 (493)
Q Consensus 304 ~~l~~~~~~~-----~~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~ 367 (493)
..++.+.... ...+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.+.-+...+.+ +
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~ 335 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-T 335 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-C
Confidence 5555554432 2356788889888722 23444 4445555544432 123456777777788877 7
Q ss_pred CCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHH
Q 043480 368 PDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD-VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD---EVTF 443 (493)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~ 443 (493)
.|+.....+..+....++++.|...|++.... .|| ..+|......+..+|+.++|.+.+++..+. .|. ..+.
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~ 411 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVI 411 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHH
Confidence 88888888888888889999999999999986 455 456666666777899999999999998774 453 4445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 444 KLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 444 ~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
...++.|+..+ .++|.+++-+-.+
T Consensus 412 ~~~~~~~~~~~-~~~~~~~~~~~~~ 435 (458)
T PRK11906 412 KECVDMYVPNP-LKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHcCCc-hhhhHHHHhhccc
Confidence 55566777665 6778777765443
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=2.3 Score=41.62 Aligned_cols=180 Identities=13% Similarity=0.070 Sum_probs=105.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhcc
Q 043480 13 RAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEV 92 (493)
Q Consensus 13 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 92 (493)
..-+....+..-++-|+.+.+.-.... ..-.......+..+.+.|++++|...|-+.+..- .|. .++.-|...
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~-d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDE-DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHHHhcCH
Confidence 345667777788888887766532111 1112234445566778899999999888876531 222 223333322
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc
Q 043480 93 KNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCG 172 (493)
Q Consensus 93 ~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (493)
... ..-...++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|..- .-....+..+.+
T Consensus 411 q~I-----------knLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~ 475 (933)
T KOG2114|consen 411 QRI-----------KNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRK 475 (933)
T ss_pred HHH-----------HHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHH
Confidence 222 4455677778777655 55566678899999999888777665544 22211 113344555556
Q ss_pred cCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 173 DGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
.+-.++|.-+-..... +...... .+-..+++++|++.+..+.
T Consensus 476 snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 476 SNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred hChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 6666666655433322 2223222 3445678888888887764
No 254
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.69 E-value=0.024 Score=32.73 Aligned_cols=41 Identities=10% Similarity=0.073 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 45 IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
.+|..+..+|.+.|++++|.++|+++++.. +.|+..+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhh
Confidence 467889999999999999999999999875 45555555443
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.68 E-value=0.36 Score=35.13 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=23.6
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 381 CKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
+..|+++.|++.|.+.+.. .+-....||.-..++.-.|+.++|+.=+++..+
T Consensus 54 aE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3444445555444444433 122334444444444444555554444444433
No 256
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.67 E-value=1.3 Score=38.55 Aligned_cols=133 Identities=8% Similarity=0.152 Sum_probs=66.9
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHh--cC----ChhHHHHHHHHhccCCC---CcChhhHHHHHHHHhccCChhhH
Q 043480 28 AVHVFDEMTQSNCRVFSIDYNRFIGVLIR--HS----RFDLVQFYYQQMHPLGF---SLTPFTYSRFISGLCEVKNFTLI 98 (493)
Q Consensus 28 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a 98 (493)
.+.+++.+.+.|...+..+|.+....... .. ....+..+|+.|.+... .++...+..++.. ...+.+.-
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l 158 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEEL 158 (297)
T ss_pred HHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHH
Confidence 44566667777666665444443222222 12 23567777777766532 2333444444332 33333332
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHhccCC--HHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 043480 99 NILLDNMDKLALEVFHKMVSKGREPDVV--TYTIVIDGLCKAKE--FDKAVQAWEHMIENGIKPDNKACAALVVG 169 (493)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (493)
. +....+++.+...|+..+.. ....++........ ..++.++++.+.+.|+++....|..+.-.
T Consensus 159 ~-------~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 159 A-------ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred H-------HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 2 55666777777666554332 22233322222222 33666777777777766665555544433
No 257
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.66 E-value=0.2 Score=42.58 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=47.7
Q ss_pred HHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHHHH
Q 043480 370 RILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI-----RGAHPDEVTFK 444 (493)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~ 444 (493)
..++..++..+...|+.+.+...+++++... +-+...|..++.+|.+.|+...|+..++++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3455666666666666666666666666553 33556666666666666666666666666532 45566555555
Q ss_pred HHHHH
Q 043480 445 LLIGG 449 (493)
Q Consensus 445 ~l~~~ 449 (493)
.+..+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44444
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=1.3 Score=37.68 Aligned_cols=144 Identities=16% Similarity=0.098 Sum_probs=85.6
Q ss_pred HHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH
Q 043480 168 VGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLD 247 (493)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 247 (493)
......|++.+|...|....... +-+...--.+..+|...|+.+.|..++..+....-.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34456778888888888777654 33455566677888888888888888887764421222222223344444444444
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHHcC
Q 043480 248 EAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAK-GLRDKVSYNTVIEAFCKGG 314 (493)
Q Consensus 248 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 314 (493)
+...+-+..-.. +.|...-..+...+...|+.+.|.+.+-.++... ...|...-..+++.+.-.|
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444444432 2355666667777777888888877776666542 2234445555555555444
No 259
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.47 E-value=0.012 Score=31.68 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=21.3
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHH
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAV 29 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 29 (493)
|+..|.|+.+|+.+...|...|++++|+
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4566777888888888888888887775
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=0.68 Score=39.85 Aligned_cols=154 Identities=11% Similarity=0.030 Sum_probs=109.8
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHH----HHHHHHHHcCCH
Q 043480 276 CNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFT----ILIKAFLREGSS 351 (493)
Q Consensus 276 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~ 351 (493)
.-.|+..+|-..++++++..+. |..+++..-.++...|+.+.....++++... ..++...|+ ...-++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467778888888888887664 8888888888899999999888888888755 233443332 333345578999
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 043480 352 AMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQ---GITPDVISYNALINGLCKSSRVSEAMHLY 428 (493)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 428 (493)
++|++.-++..+.+ +.|...-.+..+.+-..|++.++.++..+-... +.-.-...|-...-.+...+.++.|+.+|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999988888876 677777788888888889999998877665432 11111223444445566678999999999
Q ss_pred HHHH
Q 043480 429 EEMQ 432 (493)
Q Consensus 429 ~~~~ 432 (493)
++-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7653
No 261
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.44 E-value=0.83 Score=34.73 Aligned_cols=124 Identities=15% Similarity=0.098 Sum_probs=55.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 043480 340 ILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSS 419 (493)
Q Consensus 340 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 419 (493)
.++..+...+.......+++.+.+.+ ..+....+.++..|++.. .......+.. .++......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444455555555555555444 244445555555555432 2222222221 112223334555555555
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043480 420 RVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQE-KKLELACRLWDQMMEKGFTLDKTVSAALIEAIH 486 (493)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 486 (493)
-++++..++.++.. .. ..+..+... ++++.|.++..+- .+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~-----~~----~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN-----FK----DAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC-----HH----HHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 55555555555422 11 122222222 5555555555542 24556665555543
No 262
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.34 E-value=2.6 Score=39.80 Aligned_cols=36 Identities=8% Similarity=0.038 Sum_probs=16.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 043480 340 ILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTI 376 (493)
Q Consensus 340 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 376 (493)
.+...+....++++|...|..+.+.+ ..+..+|..+
T Consensus 310 El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 310 ELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 33444444555555555555555433 2333344333
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.29 E-value=0.59 Score=35.03 Aligned_cols=83 Identities=6% Similarity=0.069 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCC--CcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 043480 45 IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF--SLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGRE 122 (493)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~ 122 (493)
..+..-.....+.|++++|.+.|+.+..+-. +-...+...++.++.+.+++ ..|...+++.++....
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y-----------~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDY-----------EEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCH-----------HHHHHHHHHHHHhCCC
Confidence 3344445566788999999999999877621 22335566788888899999 5666777777765332
Q ss_pred CCHhhHHHHHHHHhcc
Q 043480 123 PDVVTYTIVIDGLCKA 138 (493)
Q Consensus 123 ~~~~~~~~l~~~~~~~ 138 (493)
....-|...+.+++.-
T Consensus 80 hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYY 95 (142)
T ss_pred CCCccHHHHHHHHHHH
Confidence 2234555555555443
No 264
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.13 E-value=0.022 Score=30.57 Aligned_cols=32 Identities=9% Similarity=0.249 Sum_probs=26.4
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 043480 32 FDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQ 64 (493)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 64 (493)
|+++++.+ |.++..|+.+..+|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56667766 788889999999999999998886
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.13 E-value=2 Score=37.32 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=13.5
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 043480 448 GGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~ 467 (493)
..+.+.+++++|..+++-..
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34556777888877777554
No 266
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=1.9 Score=36.72 Aligned_cols=141 Identities=16% Similarity=0.087 Sum_probs=76.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHH
Q 043480 310 FCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTA 389 (493)
Q Consensus 310 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 389 (493)
....|++.+|..+|......... +......+..+|...|+.+.|..++..+...--.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34556666777767666655322 34455566666777777777777776654321111122222334444444444444
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC
Q 043480 390 YGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR--GAHPDEVTFKLLIGGLVQEK 454 (493)
Q Consensus 390 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g 454 (493)
..+-++.-.. +-|...-..+...+...|+.++|.+.+-.+.+. |.. |...-..++..+.-.|
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 4444444432 225555556666777777777777766555443 222 4555555555555555
No 267
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.05 E-value=0.057 Score=29.47 Aligned_cols=26 Identities=8% Similarity=0.102 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHh
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMT 36 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 36 (493)
+|..|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777743
No 268
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=3.9 Score=40.19 Aligned_cols=145 Identities=14% Similarity=0.073 Sum_probs=87.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
....+..+.+.|++++|..-|-+.+..- .|+ .++.-|....+..+.-.+++.+.+.|. .+...-..|+.+|.+
T Consensus 371 ~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiK 443 (933)
T KOG2114|consen 371 HRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIK 443 (933)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHH
Confidence 3344556678899999999887776542 332 356666777778888888999988884 445556788999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVV--TYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVG 169 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (493)
.++.+.. ++.++.+. ...+ -....+..+.+.+-.++|.-+-.+... ....... .
T Consensus 444 lkd~~kL---------------~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---l 499 (933)
T KOG2114|consen 444 LKDVEKL---------------TEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---L 499 (933)
T ss_pred hcchHHH---------------HHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---H
Confidence 9998433 23333211 1111 244455566666666666554433322 1222222 2
Q ss_pred HhccCchhHHHHHHHHHH
Q 043480 170 LCGDGKVDLAYELTVGAM 187 (493)
Q Consensus 170 ~~~~~~~~~a~~~~~~~~ 187 (493)
+-..|++++|.+.+..+.
T Consensus 500 le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 500 LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHhcCHHHHHHHHhcCC
Confidence 334567777777766653
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.90 E-value=1.9 Score=35.92 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=33.8
Q ss_pred ccCChHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 043480 242 DEVMLDEAEKLVMEMESCGI--EPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFC 311 (493)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (493)
+.|++++|.+.|+.+.+... +-...+.-.++-++.+.++++.|+..+++.+...+......|-..|.+++
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 45555666665555553320 11223333444455556666666666655555544444344444444433
No 270
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.87 E-value=1.4 Score=38.45 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 443 FKLLIGGLVQEKKLELACRLWDQM 466 (493)
Q Consensus 443 ~~~l~~~~~~~g~~~~a~~~~~~~ 466 (493)
...+.+.|...|+.+.|+.-|+.+
T Consensus 249 ~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 249 LLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHhcccHhHHHHHHHHH
Confidence 334445555555555555555444
No 271
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.79 E-value=0.73 Score=35.95 Aligned_cols=116 Identities=13% Similarity=0.144 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh----------hHHHHHHHHhccCCCCcC-hhhHHHHHHHHhccC
Q 043480 25 IDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRF----------DLVQFYYQQMHPLGFSLT-PFTYSRFISGLCEVK 93 (493)
Q Consensus 25 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~ 93 (493)
++.|++.++.....+ |.|...++.-..++....++ ++|+.-|++.+.. .|+ ..++..+..++...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 567788887766666 77787777766666554332 3444445555443 454 356677777776554
Q ss_pred ----ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 043480 94 ----NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG 155 (493)
Q Consensus 94 ----~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (493)
+..+|...+ ++|.+.|+.... .+|+...|+.-+... ++|-+++.++.+.+
T Consensus 84 ~l~~d~~~A~~~F----~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 84 FLTPDTAEAEEYF----EKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HH---HHHHHHHH----HHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred hhcCChHHHHHHH----HHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 334444444 778888988888 588889999888765 34667777776654
No 272
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.78 E-value=1.4 Score=33.81 Aligned_cols=52 Identities=19% Similarity=0.068 Sum_probs=24.6
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 043480 347 REGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQ 399 (493)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 399 (493)
..++.+.+..+++.+.-.. |-....-..-...+...|++.+|..+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4455666666665555432 111111122222344556666666666665543
No 273
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.76 E-value=4.6 Score=39.67 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=43.2
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-------hhHHHHHHHHhccCCCCcChh
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSR-------FDLVQFYYQQMHPLGFSLTPF 80 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~ 80 (493)
+..+| ++|--+.|+|++++|.++..+.... .......+-..+..+....+ -+....-|++..+.....|++
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 34456 5777899999999999999555443 24445667777777766533 235666677666553323553
No 274
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.71 E-value=0.39 Score=40.16 Aligned_cols=103 Identities=19% Similarity=0.303 Sum_probs=52.3
Q ss_pred ChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhH
Q 043480 299 DKVSYNTVIEAFCKG-----GQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILY 373 (493)
Q Consensus 299 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 373 (493)
|-.+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|+..+-+-. +.|.. ++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n-vf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN-VF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-HH
Confidence 455555555555432 344444445555666666666666666655442211 01110 11
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043480 374 TTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR 420 (493)
Q Consensus 374 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (493)
..+.--|- .+-+-+.+++++|...|+-||..+-..|+.++.+.+-
T Consensus 129 Q~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11111111 1223466777777777777777777777777765553
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.69 E-value=1.5 Score=33.68 Aligned_cols=86 Identities=12% Similarity=-0.064 Sum_probs=55.6
Q ss_pred cchhhHHHHH---HHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 7 AQRLIYRAQI---SNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 7 ~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
.+..+.+.|+ ..-.+.++.+++..+++.+.-.. |..+..-..-...++.+|+|.+|+.+|+++.... |....-.
T Consensus 5 C~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~k 81 (160)
T PF09613_consen 5 CSDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAK 81 (160)
T ss_pred CcHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHH
Confidence 3444555554 44567799999999999988754 3333333444567889999999999999987653 3333333
Q ss_pred HHHHHH-hccCCh
Q 043480 84 RFISGL-CEVKNF 95 (493)
Q Consensus 84 ~ll~~~-~~~~~~ 95 (493)
.|+..| ...++.
T Consensus 82 ALlA~CL~~~~D~ 94 (160)
T PF09613_consen 82 ALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHHHcCCh
Confidence 444333 344443
No 276
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.45 E-value=1.6 Score=33.11 Aligned_cols=125 Identities=12% Similarity=0.116 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc
Q 043480 304 NTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKS 383 (493)
Q Consensus 304 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (493)
..++..+...+.+......++.+...+. .+....+.++..|++.. ..+....+.. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3445555555566666666666655542 35555666666665442 2222233221 11222233455555556
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043480 384 REIGTAYGVFLDMVEQGITPDVISYNALINGLCKS-SRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 384 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 451 (493)
+-++++..++.++-. +...+..+... ++++.|.+++.+- .++..|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 666666666655421 12222223323 5666666655541 14556666655554
No 277
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.45 E-value=0.89 Score=38.16 Aligned_cols=106 Identities=20% Similarity=0.190 Sum_probs=62.2
Q ss_pred CCHHhHHHHHHHHhc-----cCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043480 158 PDNKACAALVVGLCG-----DGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVT 232 (493)
Q Consensus 158 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 232 (493)
.|..+|...+..+.. .+.++-....+..|.+.|+..|..+|+.|+..+-+..- .|.. .
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n-v 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN-V 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-H
Confidence 355666666555532 34455555556666666666666666666655433211 1111 1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHH
Q 043480 233 YNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLD 282 (493)
Q Consensus 233 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 282 (493)
+....-.|-+ +-+-++.++++|...|+-||..+-..+++++.+.+-.-
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccH
Confidence 1111112221 23457888999999999999999999999988877543
No 278
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.33 E-value=2.6 Score=37.50 Aligned_cols=88 Identities=3% Similarity=-0.077 Sum_probs=68.2
Q ss_pred ccccCcchhhHHHHHHHHHHcCC------------hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGL------------IDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQ 69 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 69 (493)
++..|.|..+|..++..--..-. .+.-+.+++++++.+ +.+...+..++..+.+..+.++..+.+++
T Consensus 12 v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~ 90 (321)
T PF08424_consen 12 VRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEE 90 (321)
T ss_pred HHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 45678899999998865544322 456678899999886 67888888899999999899999999999
Q ss_pred hccCCCCcChhhHHHHHHHHhc
Q 043480 70 MHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 70 ~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
++... +-+...|...+.....
T Consensus 91 ~l~~~-~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 91 LLFKN-PGSPELWREYLDFRQS 111 (321)
T ss_pred HHHHC-CCChHHHHHHHHHHHH
Confidence 98874 4467778777766554
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.26 E-value=0.13 Score=27.98 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 442 TFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 442 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
+|..|...|.+.|++++|.+++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888553
No 280
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.94 E-value=2.1 Score=32.34 Aligned_cols=67 Identities=9% Similarity=-0.032 Sum_probs=48.3
Q ss_pred cchhhHHHHHHH---HHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 043480 7 AQRLIYRAQISN---LVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG 74 (493)
Q Consensus 7 ~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (493)
.+..+.+.|+.. -...++++++..+++.+.-.. |.....-..-...+...|+|.+|..+|++..+.+
T Consensus 5 Cs~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 5 CSNRLLGGLIEVLMYALRSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 344555555544 456799999999999988754 3333333444567889999999999999998764
No 281
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.93 E-value=0.9 Score=36.12 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF--SIDYNRFIGVLIRHSRFDLVQFYYQQMHPL 73 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (493)
..+..++..|.+.|+.+.|++.|.++.+....+. ...+..++++....+++..+.....+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4577899999999999999999999887643322 445677888889999999998888887654
No 282
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.81 E-value=0.17 Score=26.96 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCC
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSN 39 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 39 (493)
.++..+...|...|++++|++.|+++.+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 456667777777777777777777776643
No 283
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.66 E-value=2.7 Score=32.77 Aligned_cols=134 Identities=15% Similarity=0.156 Sum_probs=81.1
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccC--chhHHHHHHHHH
Q 043480 109 ALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDG--KVDLAYELTVGA 186 (493)
Q Consensus 109 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~ 186 (493)
-.+..+.+...+++|+...+..++..+.+.|++... ..++..++-+|.......+-.+.... -..-+.+++.++
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 346666777778899999999999999999987654 44555566677666665554333221 122333333333
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 043480 187 MKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMES 258 (493)
Q Consensus 187 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (493)
. ..+..+++.+...|++-+|+++.+...... ......++.+....+|...-..+++-...
T Consensus 89 ~--------~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 G--------TAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h--------hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 135566778888888888888877653221 12223455555566665555555555443
No 284
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.64 E-value=0.18 Score=26.89 Aligned_cols=30 Identities=10% Similarity=0.146 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCC
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSN 39 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 39 (493)
.+|..++..|...|++++|+..|+++++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 456777777777788888888777777654
No 285
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.57 E-value=6.1 Score=36.55 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHccCCHhHHHHHHHHHHh
Q 043480 340 ILIKAFLREGSSAMAEKLLNQMRGMNLS-PDRILYTTIIDCLCKSREIGTAYGVFLDMVE 398 (493)
Q Consensus 340 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 398 (493)
.+..++-+.|+.++|.+.++++.+.... ....+...|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3444445566666666666666543211 1223445566666666666666666665543
No 286
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.56 E-value=3.8 Score=34.20 Aligned_cols=199 Identities=16% Similarity=0.042 Sum_probs=90.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHH-H
Q 043480 267 SYNQLLKGLCNSNQLDKAYMFMVKKMEA-KGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIK-A 344 (493)
Q Consensus 267 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 344 (493)
.+......+...+.+..+...+...... ........+......+...+++..+.+.+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3334444444444455444444444331 111123333334444444444555555555554432221 111111111 4
Q ss_pred HHHcCCHHHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCh
Q 043480 345 FLREGSSAMAEKLLNQMRGMNL--SPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITP-DVISYNALINGLCKSSRV 421 (493)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 421 (493)
+...|+++.+...+........ ......+......+...++.+.+...+....+.. +. ....+..+...+...+++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccH
Confidence 5555566666665555543110 0122222333333445556666666666665541 22 244455555556666666
Q ss_pred hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 422 SEAMHLYEEMQIRGAHPD-EVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 422 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
+.|...+...... .|+ ...+..+...+...+..+.+...+.+..+.
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666553 222 333444444444555566666666655543
No 287
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.50 E-value=2.9 Score=32.61 Aligned_cols=133 Identities=14% Similarity=0.172 Sum_probs=58.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 043480 216 AIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAK 295 (493)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 295 (493)
++++.+.+.+++|+...+..+++.+.+.|.+..... +...++-+|.......+-.+.. ....+.++--+|...-
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHh
Confidence 444455555666666666666666666666544333 2333333444333333222211 1222222222222210
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043480 296 GLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMR 362 (493)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 362 (493)
...+..+++.+...|++-+|.++.+..... +......++.+..+.+|...-..+++-..
T Consensus 89 ----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 89 ----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 012344455555566666666555544221 11222344455455555544444444443
No 288
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.25 E-value=0.26 Score=42.37 Aligned_cols=57 Identities=9% Similarity=0.041 Sum_probs=47.8
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL 73 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (493)
..-|.++|.+++|+.+|....... |.+++.+..-..+|.+...+..|..-.+..+..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL 160 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 456889999999999999988865 668899998999999999998888777766543
No 289
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.17 E-value=12 Score=38.73 Aligned_cols=104 Identities=16% Similarity=0.148 Sum_probs=53.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCC
Q 043480 343 KAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVI--SYNALINGLCKSSR 420 (493)
Q Consensus 343 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~ 420 (493)
..+...+.+++|--.|+..-+ ....+.+|..+|++.+|..+..++... -+.. +-..|+.-+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHccc
Confidence 333445556665555543322 123455666677777777776665431 1111 22456666667777
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 421 VSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQM 466 (493)
Q Consensus 421 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 466 (493)
+-+|-++..+..+. |. -.+..|++...|++|.++....
T Consensus 1015 h~eAa~il~e~~sd---~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD---PE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred chhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 77777777666542 11 1223344444555555554433
No 290
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.06 E-value=1.3 Score=30.32 Aligned_cols=45 Identities=9% Similarity=0.146 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043480 388 TAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQ 432 (493)
Q Consensus 388 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 432 (493)
+..+-++.+....+.|++.+..+.+++|.+.+|+..|.++|+-..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444455544555555555555555555555555555555544
No 291
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.73 E-value=8.3 Score=35.74 Aligned_cols=83 Identities=11% Similarity=0.085 Sum_probs=58.6
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGIT-PDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD-EVTFKLLIGG 449 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~ 449 (493)
+=..+..++.+.|+.++|.+.++++.+.... .+..+...|+.++...+.+.++..++.+..+...+.+ ..+|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 3345777778899999999999999864211 2345677899999999999999999999865433222 4456655433
Q ss_pred HHhcC
Q 043480 450 LVQEK 454 (493)
Q Consensus 450 ~~~~g 454 (493)
....+
T Consensus 341 aRav~ 345 (539)
T PF04184_consen 341 ARAVG 345 (539)
T ss_pred HHhhc
Confidence 33333
No 292
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.71 E-value=11 Score=36.90 Aligned_cols=319 Identities=12% Similarity=0.063 Sum_probs=169.6
Q ss_pred HhccCCHHHHHHHHHHHH--------HCCCCCCHHhHHH-----HHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHH
Q 043480 135 LCKAKEFDKAVQAWEHMI--------ENGIKPDNKACAA-----LVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNAL 201 (493)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (493)
+.+..++++-..+...+. ..|++.+..-|.. ++.-+...+.+..|+++-..+...-.. ...+|...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHH
Confidence 344555665555444432 3466666655543 466677778888888887666532111 15566667
Q ss_pred HHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC----CChhhHHHHHHH
Q 043480 202 ISGFCRTGR---IRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIE----PDVYSYNQLLKG 274 (493)
Q Consensus 202 ~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~ 274 (493)
..-+.+..+ -+.+..+-+++... . -+..+|..+.+.....|+.+-|..+++.=...+.. .+..-+...+.-
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~k 555 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKK 555 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHH
Confidence 777776632 22233333333322 2 34456777777777888988888877653222100 112223334444
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCC-----------ChhhHHHHHH---------HHHHcCCHHHHHHHHH--HHHH-cCC
Q 043480 275 LCNSNQLDKAYMFMVKKMEAKGLR-----------DKVSYNTVIE---------AFCKGGQTRRAYKLFE--GMRR-RGI 331 (493)
Q Consensus 275 ~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~---------~~~~~~~~~~a~~~~~--~~~~-~~~ 331 (493)
....|+.+-...++..+.+.-... ....|.-+++ .|....+. .+..-|. .... .-+
T Consensus 556 aies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~ 634 (829)
T KOG2280|consen 556 AIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNH-QALASFHLQASYAAETI 634 (829)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccch-hhhhhhhhhhhhhhhhh
Confidence 555666655555544443321100 0001111111 01111111 1111110 0000 001
Q ss_pred CcCHhHHHHHHHHHHHcCCHH----------HHHHHHHHHHh-CCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCC
Q 043480 332 ELDVVTFTILIKAFLREGSSA----------MAEKLLNQMRG-MNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQG 400 (493)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 400 (493)
.+-.........++.+..... +-+.+.+.+.. .+..-...+.+--+.-+...|+..+|.++-.+..
T Consensus 635 ~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--- 711 (829)
T KOG2280|consen 635 EGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--- 711 (829)
T ss_pred cccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC---
Confidence 111222333444444433311 11222222222 2323344455666667777899999988887765
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 401 ITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 401 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 467 (493)
-||-..|..=+.+++..+++++-+++-+... ++.-|.....+|.+.|+.++|.+++.+..
T Consensus 712 -ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 712 -IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred -CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 5688888888999999999998877666543 24556778899999999999999988773
No 293
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.67 E-value=1.6 Score=30.32 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 388 TAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 388 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444445555555556666666666666666666666666665543
No 294
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.66 E-value=14 Score=38.24 Aligned_cols=131 Identities=11% Similarity=0.174 Sum_probs=58.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhh-CC--CCCChhhHHHHHHHHHhcCC-hhHHHHHHHHhccCCCCcChh--hHHHHHH
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQ-SN--CRVFSIDYNRFIGVLIRHSR-FDLVQFYYQQMHPLGFSLTPF--TYSRFIS 87 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~ll~ 87 (493)
+.+.-+++++++.+|.++..+-+- .+ ...++..+..-+.++.++-+ .+-...++-.+...++..+.. ++.+-.+
T Consensus 682 a~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k~ 761 (1265)
T KOG1920|consen 682 AKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGKQ 761 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhccccccccce
Confidence 456777888888888776654321 11 11223334444445555433 333333344443222211110 1111111
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC--CHHHHHHHHHHHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAK--EFDKAVQAWEHMIE 153 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 153 (493)
.|......+ +-.....+.......+ ..|+ .-...+|..|.+.+ .++.++....+...
T Consensus 762 ~~~~r~~~d-------~kv~~vc~~vr~~l~~-~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 762 VYMSRDPYD-------NKVNSVCDAVRNALER-RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred eEEeccchh-------hHHHHHHHHHHHHHhh-cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 222222221 1112223333333333 3455 45556778888877 66777777666664
No 295
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.61 E-value=6.6 Score=34.34 Aligned_cols=128 Identities=10% Similarity=0.218 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCCCcCHhHHHHHHHHHHH--c----CCHHHHHHHHHHHHhCCC---CCCHHhHHHHHHHHHccCC---
Q 043480 318 RAYKLFEGMRRRGIELDVVTFTILIKAFLR--E----GSSAMAEKLLNQMRGMNL---SPDRILYTTIIDCLCKSRE--- 385 (493)
Q Consensus 318 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~--- 385 (493)
+...+++.|.+.|..-+..++.+....... . ....++..+++.|++... .++...+..++.. ...+
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344555666666655555444332222211 1 123455666666665321 1223333333322 2222
Q ss_pred -HhHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043480 386 -IGTAYGVFLDMVEQGITPDVI--SYNALINGLCKSSR--VSEAMHLYEEMQIRGAHPDEVTFKLLI 447 (493)
Q Consensus 386 -~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~ 447 (493)
.+.++.+|+.+.+.|+..+-. ....++..+..... ...+.++++.+.+.|+++....|..+.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 234555566665555543322 12222221111111 234555666666666666555555444
No 296
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.54 E-value=0.27 Score=28.17 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=21.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCC
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSN 39 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 39 (493)
.|+.+|...|+.+.|+++++++...+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47888888888888888888888654
No 297
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.47 E-value=3.6 Score=35.33 Aligned_cols=104 Identities=12% Similarity=0.107 Sum_probs=62.9
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhh
Q 043480 191 VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNG---CEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYS 267 (493)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 267 (493)
.+.+..+...++..-....+++.+..++-++.... ..|+...+ .+++.+ ..-++++++.++..=...|+-||.++
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 34444444555555555666777777666665321 11221111 222222 22356677777777777888888888
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 043480 268 YNQLLKGLCNSNQLDKAYMFMVKKMEAKG 296 (493)
Q Consensus 268 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 296 (493)
++.+++.+.+.+++.+|..+...++.+..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 88888888888888888777766665433
No 298
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.06 E-value=0.25 Score=24.47 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHH
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFD 33 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~ 33 (493)
....+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44556677777777777776664
No 299
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.91 E-value=9.4 Score=34.55 Aligned_cols=192 Identities=10% Similarity=0.030 Sum_probs=102.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCC--------CcChhhHHHHH
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF--------SLTPFTYSRFI 86 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~ll 86 (493)
.+.+..+.|+++...+......... ++...+..+... ..++++++....+.+...-. ......|..++
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~--~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDS--PEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCC--hhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4677889999999666665554322 334444444433 78999998888888765310 01111222222
Q ss_pred HHHhccCChhhHHHHHHHH---H---HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 043480 87 SGLCEVKNFTLINILLDNM---D---KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN 160 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~---~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 160 (493)
.. ....+.+++..+.... . ....+.++.-... ..++...|..++..-. -++..+ .......
T Consensus 80 ~l-q~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~-~~~~~~~~~~il~~R~---------~~l~~~--~~~~~~~ 146 (352)
T PF02259_consen 80 KL-QQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPN-MQDDFSVWEPILSLRR---------LVLSLI--LLPEELA 146 (352)
T ss_pred HH-hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHH---------HHHhcc--cchhHHH
Confidence 21 1222333333332111 1 1222222222221 3445555555543210 011101 1122345
Q ss_pred HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 161 KACAALVVGLCGDGKVDLAYELTVGAMKGKVEF---GVLIYNALISGFCRTGRIRRAMAIKSFMKW 223 (493)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 223 (493)
.++..+...+.+.|.++.|...+..+....... .+.+.-.-+...-..|+..+|+..++....
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677888888888999999998888887643111 334444556667778888888888877776
No 300
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.85 E-value=1.6 Score=29.88 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043480 422 SEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEA 484 (493)
Q Consensus 422 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 484 (493)
=++.+-++.+...++.|++.+..+.+++|.+.+|+..|.++++-.+.+. ..+..+|..+++-
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lqe 85 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQE 85 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHHH
Confidence 3455555566666666677777777777777777777777776665331 1133345544443
No 301
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.80 E-value=2 Score=34.23 Aligned_cols=96 Identities=11% Similarity=0.059 Sum_probs=68.7
Q ss_pred HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHH--H
Q 043480 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD--VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFK--L 445 (493)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~--~ 445 (493)
..+..+...|.+.|+.+.|.+.|.++.+....|. ...+-.+++.....|++..+...+.+....--.+ |...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5788999999999999999999999988644433 3456778888889999999999988875431122 222222 2
Q ss_pred HH--HHHHhcCCHHHHHHHHHHH
Q 043480 446 LI--GGLVQEKKLELACRLWDQM 466 (493)
Q Consensus 446 l~--~~~~~~g~~~~a~~~~~~~ 466 (493)
.. -.+...|++..|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 22 3345678888888877665
No 302
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.69 E-value=5.2 Score=31.13 Aligned_cols=133 Identities=11% Similarity=0.066 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH-H--
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSID-YNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR-F-- 85 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l-- 85 (493)
..|..-++ ..+.|..++|+.-|..+.+.|...=++. ...........|+-..|...|.++-.....|.+.--.. |
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 33443333 4566788888888888877663322221 12233456677888888888888766543343321111 1
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 86 ISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
.-.+...|.+ ++...-.+.+...|.+--...-..|.-+-.+.|++..|...|..+...
T Consensus 139 a~lLvD~gsy-----------~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 139 AYLLVDNGSY-----------DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHhccccH-----------HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1123345555 333344444444333333445556666667777777777777777654
No 303
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.66 E-value=14 Score=35.97 Aligned_cols=152 Identities=16% Similarity=0.088 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHH--HH-HHccCCHHHHHHHHHHHHHc----CCCCChhhHHHHHHHHHHcC----
Q 043480 246 LDEAEKLVMEMESCGIEPDVYSYNQLL--KG-LCNSNQLDKAYMFMVKKMEA----KGLRDKVSYNTVIEAFCKGG---- 314 (493)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~---- 314 (493)
...+.+.++...+.|.. ........+ .+ +....+.+.|+..|..+... .....+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 34566666666655421 111111111 11 33455666666666666541 00012333444445554432
Q ss_pred -CHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH--ccCCHhHHH
Q 043480 315 -QTRRAYKLFEGMRRRGIELDVVTFTILIKAFLR-EGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLC--KSREIGTAY 390 (493)
Q Consensus 315 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~ 390 (493)
+...|..++......|.+ +....-..+..... ..+...|..+|...-+.| .+....+..++.... ...+...|.
T Consensus 307 ~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred ccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 344455555555554422 22222221111111 134455555555555544 222222222211111 122455555
Q ss_pred HHHHHHHhCC
Q 043480 391 GVFLDMVEQG 400 (493)
Q Consensus 391 ~~~~~~~~~~ 400 (493)
.++.+..+.|
T Consensus 385 ~~~k~aA~~g 394 (552)
T KOG1550|consen 385 AYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHcc
Confidence 5555555554
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.66 E-value=0.71 Score=24.40 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 442 TFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 442 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
.+..+...+...|++++|.+.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445555566666666666666666554
No 305
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.58 E-value=5.4 Score=31.06 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=22.5
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043480 242 DEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKME 293 (493)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 293 (493)
..|.++......+.+...+-+.-...-..|.-+-.+.|++..|...|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4444444444444443333222222333344444455555555555554444
No 306
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.51 E-value=5.6 Score=34.27 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=49.5
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHH
Q 043480 334 DVVTFTILIKAFLREGSSAMAEKLLNQMRGMN---LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNA 410 (493)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 410 (493)
...+...++..-.....++.++..+-.++... ..|+... ..+++.+. .-+.++++.++..=+..|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 34444444444444455566655555544310 0111111 11222222 2345566666666666666666666666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 043480 411 LINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
+|+.+.+.+++.+|.++...|..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 66666666666666666655544
No 307
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.45 E-value=7.4 Score=32.40 Aligned_cols=86 Identities=20% Similarity=0.107 Sum_probs=39.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChh
Q 043480 345 FLREGSSAMAEKLLNQMRGMNLSP-DRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD-VISYNALINGLCKSSRVS 422 (493)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 422 (493)
+...++.+.+...+....+.. +. ....+..+...+...++++.+...+...... .|+ ...+..+...+...+..+
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 253 (291)
T COG0457 177 LEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYE 253 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHH
Confidence 334445555555554444432 12 2344444445555555555555555555543 222 223333333333444556
Q ss_pred HHHHHHHHHHH
Q 043480 423 EAMHLYEEMQI 433 (493)
Q Consensus 423 ~a~~~~~~~~~ 433 (493)
.+...+.+...
T Consensus 254 ~~~~~~~~~~~ 264 (291)
T COG0457 254 EALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHH
Confidence 66665555554
No 308
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.32 E-value=0.82 Score=24.23 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 442 TFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 442 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
+|..+..++...|++++|...++++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 444555555555555555555555554
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.07 E-value=0.56 Score=26.30 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhh
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQ 37 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 37 (493)
.+++.|...|...|++++|+++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566777777777777777777776653
No 310
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.04 E-value=3.9 Score=28.47 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 423 EAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 423 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
+..+-++.+...++.|++.+..+.+++|.+..++..|.++++..+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555555666666666666666666666666666665554
No 311
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.01 E-value=3.7 Score=37.48 Aligned_cols=124 Identities=10% Similarity=0.052 Sum_probs=77.4
Q ss_pred HHHHHHcCCHHHHHHHHHHH-HHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 043480 307 IEAFCKGGQTRRAYKLFEGM-RRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSRE 385 (493)
Q Consensus 307 ~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 385 (493)
|.--...|+...|.+-+... ....-.|+.. ......+...|+++.+...+....+. +.....+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 34444567776665544444 4332233333 33334456788888888887766542 23455677788888888888
Q ss_pred HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 386 IGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 386 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
++.|..+-..|+...+. +...........-..|-++++.-.|++....
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 88888888888866544 3343333333344567788888888887664
No 312
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.99 E-value=2.3 Score=34.39 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=51.8
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRG--AHPDEVTFKLLIGG 449 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~ 449 (493)
+.+..+..+.+.+.+.+++...+.-++.. +-|...-..++..++-.|++++|..-++-.-... ..+-..+|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455667777888888888888777653 3355566677888888899998887777664421 22345666666654
No 313
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.75 E-value=18 Score=35.76 Aligned_cols=118 Identities=9% Similarity=0.023 Sum_probs=71.5
Q ss_pred ccCCHHHHHHHHHHHHHCC-CCCCH--HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 043480 137 KAKEFDKAVQAWEHMIENG-IKPDN--KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRR 213 (493)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 213 (493)
...+.+.|..++....... ..+.. .....+.......+..+++...+...... ..+......-+......++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHH
Confidence 3456788888888875432 22222 22333333333333356666666665433 2244555556666678899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 043480 214 AMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEME 257 (493)
Q Consensus 214 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 257 (493)
+...+..|.... .-...-.-=+.+++...|+.++|...|+.+.
T Consensus 331 ~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 988888886542 2222333345566666899999999998874
No 314
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.46 E-value=10 Score=32.37 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHH
Q 043480 408 YNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK-----GFTLDKTVS 478 (493)
Q Consensus 408 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~ 478 (493)
++...+.|..+|.+.+|.++.++....+ +.+...+..|+..+...||--.|.+-++++.+. |+..|..+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 4555678889999999999999998753 228888999999999999977777777766543 777666554
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.37 E-value=0.88 Score=25.48 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 440 EVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
..+++.|...|...|++++|..++++..+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356777888888888888888888887653
No 316
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.08 E-value=14 Score=33.39 Aligned_cols=63 Identities=13% Similarity=0.056 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 043480 301 VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIEL---DVVTFTILIKAFLREGSSAMAEKLLNQMRG 363 (493)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 363 (493)
.+|..+...+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|...++...+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666666666666665533111 223333334444556666666666665554
No 317
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.91 E-value=0.69 Score=26.52 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=12.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 043480 446 LIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 446 l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555554
No 318
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.90 E-value=3.9 Score=32.12 Aligned_cols=115 Identities=14% Similarity=0.163 Sum_probs=61.2
Q ss_pred hhHHHHHHHHhccCCCCcChhhHHHHHHHH---hccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHH
Q 043480 60 FDLVQFYYQQMHPLGFSLTPFTYSRFISGL---CEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDV-VTYTIVIDGL 135 (493)
Q Consensus 60 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~ 135 (493)
++.|.+.++.....+ +.|...++.-..++ +...+..++..++ ++|+.-|++.+. +.|+. .++..+..+|
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~mi----edAisK~eeAL~--I~P~~hdAlw~lGnA~ 79 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMI----EDAISKFEEALK--INPNKHDALWCLGNAY 79 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHH----HHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHH----HHHHHHHHHHHh--cCCchHHHHHHHHHHH
Confidence 455666666644444 45555444444444 3444445555555 677888888877 45543 4555566665
Q ss_pred hccC----C-------HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhC
Q 043480 136 CKAK----E-------FDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKG 189 (493)
Q Consensus 136 ~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (493)
...+ + |++|.+.|++.... .|+...|..-+.... .|-+++.++.+.
T Consensus 80 ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 80 TSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 5433 2 45555555555554 678888877776653 344555555544
No 319
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.62 E-value=9.5 Score=30.72 Aligned_cols=73 Identities=14% Similarity=0.093 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCCHHHHH
Q 043480 142 DKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKG---KVEFGVLIYNALISGFCRTGRIRRAM 215 (493)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~ 215 (493)
+.|.+.|-.+...+.--++.....+...|. ..+.+++..++..+++. +-.+|+..+..|++.+.+.++++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 556666666655544434444444444443 45666666666666542 22556777777777777777776663
No 320
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.53 E-value=10 Score=30.88 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 441 VTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.||-.|.+-+...|+.++|..+|+-+...
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 44555566666666666666666666543
No 321
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.33 E-value=1 Score=23.77 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhC
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQS 38 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 38 (493)
.+|..+...|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677788888888888888888887764
No 322
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.88 E-value=8.6 Score=29.18 Aligned_cols=19 Identities=5% Similarity=0.130 Sum_probs=9.6
Q ss_pred HccCCHhHHHHHHHHHHhC
Q 043480 381 CKSREIGTAYGVFLDMVEQ 399 (493)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~ 399 (493)
...|++++|..+|+++.+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 4445555555555555443
No 323
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.50 E-value=26 Score=34.19 Aligned_cols=274 Identities=15% Similarity=0.081 Sum_probs=155.9
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHH----H-HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHcc
Q 043480 176 VDLAYELTVGAMKGKVEFGVLIYNALIS----G-FCRTGRIRRAMAIKSFMKW-------NGCEPDLVTYNAILNYYCDE 243 (493)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~ 243 (493)
...+...++...+.+ +...-..+.. + +....+.+.|+.+|+.+.. .+ .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456788888877765 2222222222 2 3356789999999988876 44 233455566666654
Q ss_pred C-----ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHH----c
Q 043480 244 V-----MLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCN-SNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCK----G 313 (493)
Q Consensus 244 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 313 (493)
. +.+.|..++....+.|. |+.......+..... ..+...|.++|..+-..+. ...+-.+..+|.. .
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcC
Confidence 3 56778888888888774 444443333332222 2467889999988887653 2333333333322 2
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH-HHH---Hc----cCC
Q 043480 314 GQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTII-DCL---CK----SRE 385 (493)
Q Consensus 314 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~----~~~ 385 (493)
.+...|..++.+....|. |...--...+..+.. +.++.+...+..+...+.. ...+-...+ ... .. ..+
T Consensus 378 r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccc
Confidence 467889999998888873 232222222333333 6777777666666665532 222222111 111 11 124
Q ss_pred HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHH
Q 043480 386 IGTAYGVFLDMVEQGITPDVISYNALINGLCKS----SRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQ----EKKLE 457 (493)
Q Consensus 386 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 457 (493)
...+...+.+....| +......+...|..- .+++.|...+......+ ......+...+.. .. +.
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LH 526 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hH
Confidence 566777777777655 444555555544432 35778888888877654 3333344433332 23 68
Q ss_pred HHHHHHHHHHHcC
Q 043480 458 LACRLWDQMMEKG 470 (493)
Q Consensus 458 ~a~~~~~~~~~~~ 470 (493)
.|.+++++..+.+
T Consensus 527 ~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 527 LAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHhcC
Confidence 8888888887653
No 324
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.33 E-value=4.1 Score=27.98 Aligned_cols=34 Identities=18% Similarity=0.086 Sum_probs=16.1
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhC
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQS 38 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 38 (493)
.|.|...-..++..+...|++++|++.+-++.+.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3444444445555555555555555555544443
No 325
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.11 E-value=12 Score=30.05 Aligned_cols=90 Identities=18% Similarity=0.181 Sum_probs=60.9
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChh-----hHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHh
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSI-----DYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (493)
..-+.++|++++|..-|.++++.- |+... .|..-..++.+.+.++.|+.-..+.++.+ +....+...-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHH
Confidence 345778999999999999998874 33222 24444567889999999999998888765 223334444455677
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHh
Q 043480 91 EVKNFTLINILLDNMDKLALEVFHKMVS 118 (493)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~a~~~~~~~~~ 118 (493)
+...+ +.|++-+..+..
T Consensus 180 k~ek~-----------eealeDyKki~E 196 (271)
T KOG4234|consen 180 KMEKY-----------EEALEDYKKILE 196 (271)
T ss_pred hhhhH-----------HHHHHHHHHHHH
Confidence 77777 445555555555
No 326
>PRK09687 putative lyase; Provisional
Probab=87.96 E-value=17 Score=31.58 Aligned_cols=137 Identities=12% Similarity=0.047 Sum_probs=77.7
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC-CHhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043480 334 DVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSR-EIGTAYGVFLDMVEQGITPDVISYNALI 412 (493)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 412 (493)
+...-...+.++.+.++. .+...+-.+.+ .++..+-...+.++...+ +...+...+..++. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 444445556666666653 44444444443 344444444455555442 23355555555553 34556666677
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043480 413 NGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIH 486 (493)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 486 (493)
.++.+.|+ ..++..+-+..+. ++ .....+.++...|+. +|...+..+.+. .||..+...-+.+|.
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~---~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKK---GT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcC---Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 77777777 4455555555443 22 234567777777774 577777777753 457777777666664
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.96 E-value=1.8 Score=22.77 Aligned_cols=29 Identities=17% Similarity=0.043 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 441 VTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.+|..+...|...|++++|.+.+++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677778888888888888888887753
No 328
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.78 E-value=12 Score=30.16 Aligned_cols=73 Identities=15% Similarity=0.003 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043480 387 GTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR---GAHPDEVTFKLLIGGLVQEKKLELAC 460 (493)
Q Consensus 387 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~ 460 (493)
+.|...|-.+...+.--++.....|...| ...|.+++++++-+..+. +-.+|+..+..|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44444444444443332333333333322 244555555555554331 12345556666666666666655553
No 329
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.61 E-value=25 Score=33.62 Aligned_cols=148 Identities=13% Similarity=0.125 Sum_probs=80.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 043480 208 TGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMF 287 (493)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 287 (493)
.|+++.|..++..+. ....+.++..+-+.|..++|+++- +|+.. -.....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHH
Confidence 455665555433322 223344455555566655554432 22211 12233456777777655
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 043480 288 MVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLS 367 (493)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 367 (493)
..+. .+..-|..|.++....+++..|.+.|..... |..|+-.+...|+.+....+-....+.| .
T Consensus 660 a~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~ 723 (794)
T KOG0276|consen 660 AVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-K 723 (794)
T ss_pred HHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-c
Confidence 4332 2555677777777777777777777665442 3455556666677666666655555555 3
Q ss_pred CCHHhHHHHHHHHHccCCHhHHHHHHHH
Q 043480 368 PDRILYTTIIDCLCKSREIGTAYGVFLD 395 (493)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 395 (493)
.|... .+|...|+++++.+++..
T Consensus 724 ~N~AF-----~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 NNLAF-----LAYFLSGDYEECLELLIS 746 (794)
T ss_pred cchHH-----HHHHHcCCHHHHHHHHHh
Confidence 33222 234456777777766644
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.60 E-value=0.98 Score=23.59 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=12.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 043480 446 LIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 446 l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
+..++.+.|++++|.+.++++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44445555555555555555554
No 331
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.56 E-value=3.7 Score=33.24 Aligned_cols=78 Identities=12% Similarity=0.108 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCC--CCcChhhHHHHHHHH
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG--FSLTPFTYSRFISGL 89 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~ 89 (493)
.+..++.+.+.+.+.+|+...+.-.+.. |.+...-..++..++-.|+|++|..-++-.-+.. ..+...+|..++.+-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 4456788899999999999999888775 6677777888899999999999987777665432 234456777777654
Q ss_pred h
Q 043480 90 C 90 (493)
Q Consensus 90 ~ 90 (493)
.
T Consensus 83 a 83 (273)
T COG4455 83 A 83 (273)
T ss_pred H
Confidence 3
No 332
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.04 E-value=1.1 Score=23.35 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhC
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQS 38 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 38 (493)
+-.++.++.+.|++++|.+.|+++.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345667777777777777777777664
No 333
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.97 E-value=5.7 Score=34.62 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=59.8
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHH
Q 043480 51 IGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTI 130 (493)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 130 (493)
..-|.++|.|++|+..|...+... +.|+.++..-..+|.+...+..| ..-....+..+ ..-+..|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~A-----------E~DC~~AiaLd-~~Y~KAYSR 170 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQA-----------EEDCEAAIALD-KLYVKAYSR 170 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHH-----------HHhHHHHHHhh-HHHHHHHHH
Confidence 345778999999999999988763 34888888888899998888433 33333332220 111334444
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 043480 131 VIDGLCKAKEFDKAVQAWEHMIENGIKPD 159 (493)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 159 (493)
-+.+-...|...+|.+=++..++. .|+
T Consensus 171 R~~AR~~Lg~~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 171 RMQARESLGNNMEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHhh--Ccc
Confidence 444445556666676666666654 455
No 334
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.68 E-value=20 Score=34.17 Aligned_cols=134 Identities=17% Similarity=0.070 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHH
Q 043480 266 YSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAF 345 (493)
Q Consensus 266 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (493)
...+.+.+.+.+.|-.++|+++- +|+.. -.....+.|+++.|.++..+.. +..-|..|..+.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 34556677777777777776542 12211 1223456788888888776553 667799999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 043480 346 LREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAM 425 (493)
Q Consensus 346 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 425 (493)
...+++..|.+.|..... |..|+-.+...|+-+....+-....+.|. . |....+|...|+++++.
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-N-----NLAFLAYFLSGDYEECL 741 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHH
Confidence 999999999999987764 45677777778887766666666666552 2 33344677889999999
Q ss_pred HHHHHHH
Q 043480 426 HLYEEMQ 432 (493)
Q Consensus 426 ~~~~~~~ 432 (493)
+++..-.
T Consensus 742 ~lLi~t~ 748 (794)
T KOG0276|consen 742 ELLISTQ 748 (794)
T ss_pred HHHHhcC
Confidence 8887653
No 335
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.65 E-value=17 Score=29.22 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=51.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC-----HHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHh
Q 043480 344 AFLREGSSAMAEKLLNQMRGMNLSPD-----RILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD-VISYNALINGLCK 417 (493)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 417 (493)
-+...|++++|..-|......- ++. ...|..-..++.+.+.++.|..--.+.++.+ |+ ......-..+|.+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 3556777777777777776542 222 1234444455666677777777666666643 22 2222233445666
Q ss_pred cCChhHHHHHHHHHHHc
Q 043480 418 SSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 418 ~g~~~~a~~~~~~~~~~ 434 (493)
...+++|+.=++++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 67777777777777664
No 336
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=85.52 E-value=9.6 Score=27.80 Aligned_cols=46 Identities=9% Similarity=0.153 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 388 TAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 388 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
+..+-++.+....+.|++.....-+++|.+.+|+..|.++|+-+..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4445555555666667777777777777777777777777776654
No 337
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.11 E-value=42 Score=33.28 Aligned_cols=189 Identities=14% Similarity=0.106 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhh-CCCCCC--hhhHHHHHHHHH-hcCChhHHHHHHHHhccCCCCcChh-----hHHHHHHHHhccCChh
Q 043480 26 DQAVHVFDEMTQ-SNCRVF--SIDYNRFIGVLI-RHSRFDLVQFYYQQMHPLGFSLTPF-----TYSRFISGLCEVKNFT 96 (493)
Q Consensus 26 ~~A~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~ 96 (493)
..|++.++.+.+ ..++|. ..++..++..+. ...+++.|...+++.+...-.++.. +...+++.+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 346777777763 333332 334555666665 6789999999999886543233221 2233445555555442
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHH-HHHHhccCCHHHHHHHHHHHHHCC---CCCCHHhHHHHHHHHh-
Q 043480 97 LINILLDNMDKLALEVFHKMVSKGREPDVVTYTIV-IDGLCKAKEFDKAVQAWEHMIENG---IKPDNKACAALVVGLC- 171 (493)
Q Consensus 97 ~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~- 171 (493)
|...+++. ++.++. .+..+-...|..+ +..+...+++..|++.++.+.... ..|-..++..++.+..
T Consensus 118 -a~~~l~~~----I~~~~~---~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~ 189 (608)
T PF10345_consen 118 -ALKNLDKA----IEDSET---YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLH 189 (608)
T ss_pred -HHHHHHHH----HHHHhc---cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence 44333221 111211 2222233344444 333334489999999998887532 2333444555554443
Q ss_pred -ccCchhHHHHHHHHHHhCC---------CCCChhhHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 043480 172 -GDGKVDLAYELTVGAMKGK---------VEFGVLIYNALISGFC--RTGRIRRAMAIKSFMK 222 (493)
Q Consensus 172 -~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 222 (493)
..+..+++.+..+.+.... ..|...+|..+++.++ ..|+++.+...++++.
T Consensus 190 l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 190 LRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455666766666653311 1334556666666544 5677767766655553
No 338
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.03 E-value=46 Score=33.62 Aligned_cols=195 Identities=16% Similarity=0.094 Sum_probs=106.4
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChh-------hHHHHHH-HHHHcCCHHHHHHHHHHHHHc----CCCcCHhHHHHHH
Q 043480 275 LCNSNQLDKAYMFMVKKMEAKGLRDKV-------SYNTVIE-AFCKGGQTRRAYKLFEGMRRR----GIELDVVTFTILI 342 (493)
Q Consensus 275 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 342 (493)
.....++++|..++.+....-+.++.. .++.+-. .....|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888877776654443222 2333322 233468888888888877654 2234556677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH---HhHHHHHH--HHHccCCH--hHHHHHHHHHHhCC--CCC----CHhhHH
Q 043480 343 KAFLREGSSAMAEKLLNQMRGMNLSPDR---ILYTTIID--CLCKSREI--GTAYGVFLDMVEQG--ITP----DVISYN 409 (493)
Q Consensus 343 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~--~~~~~~~~--~~a~~~~~~~~~~~--~~p----~~~~~~ 409 (493)
.+..-.|++++|..+.+...+..-.-+. ..|..+.. .+...|.. .+.+..+....... -.| -..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7888899999999888776653112222 23333322 23455632 23333333333210 011 123444
Q ss_pred HHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 410 ALINGLCKS-SRVSEAMHLYEEMQIRGAHPDEVTF--KLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 410 ~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.+..++.+. +...++..-++-.......|-...+ ..|+......|+.+.|...+.++...
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 455555442 2223333333333333233322222 36778888899999999998888776
No 339
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.81 E-value=25 Score=30.32 Aligned_cols=115 Identities=16% Similarity=0.267 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHH-cCCCcCHhHHHHHHHHHHH-cC-CHHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHHccCCHhHHHH
Q 043480 316 TRRAYKLFEGMRR-RGIELDVVTFTILIKAFLR-EG-SSAMAEKLLNQMRG-MNLSPDRILYTTIIDCLCKSREIGTAYG 391 (493)
Q Consensus 316 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 391 (493)
.-+|+++|+.... ..+-.|......+++.... .+ ....-.++.+-+.. .+-.++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3445555542211 1233355555555555444 11 22222233333332 2235666666677777777777777777
Q ss_pred HHHHHHhC-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 043480 392 VFLDMVEQ-GITPDVISYNALINGLCKSSRVSEAMHLYEE 430 (493)
Q Consensus 392 ~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (493)
++...... +..-|...|..+++.-...||..-...+.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 77666544 4445666677777777777776665555554
No 340
>PRK09687 putative lyase; Provisional
Probab=84.74 E-value=26 Score=30.51 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=12.2
Q ss_pred CHhhHHHHHHHHhccCCH----HHHHHHHHHH
Q 043480 124 DVVTYTIVIDGLCKAKEF----DKAVQAWEHM 151 (493)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~----~~a~~~~~~~ 151 (493)
|...-...+.+++..|+. +++...+..+
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 333334444444444442 3444445444
No 341
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.67 E-value=0.37 Score=36.82 Aligned_cols=129 Identities=15% Similarity=0.068 Sum_probs=75.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043480 341 LIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR 420 (493)
Q Consensus 341 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (493)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++.. +..-...++..|.+.|-
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555666777777777777776554566777777888887777667766666511 11223455666777777
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhchhc
Q 043480 421 VSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDAA 491 (493)
Q Consensus 421 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 491 (493)
++++.-++.++-...- .+..+...++++.|.++..+ .++..+|..+++.|...++.
T Consensus 86 ~~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCcc
Confidence 7777776666432110 11123444555555533322 24578888888888776653
No 342
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.51 E-value=51 Score=33.74 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=21.0
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh
Q 043480 135 LCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLC 171 (493)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (493)
|......+-+...++.+....-.++....+.++..|+
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 4445566666666666665444445555555555554
No 343
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.08 E-value=2.7 Score=21.15 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhC
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQS 38 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 38 (493)
+|..+...+...|+++.|...|++..+.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4555666666667777777766666543
No 344
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.65 E-value=21 Score=30.46 Aligned_cols=86 Identities=8% Similarity=-0.003 Sum_probs=46.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH--
Q 043480 201 LISGFCRTGRIRRAMAIKSFMKWN--GCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLC-- 276 (493)
Q Consensus 201 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 276 (493)
-|.+++..++|.+++...-+--+. .++|. ....-|-.|.+.+.+..+.++-.......-..+...|..++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 467777777777776654333221 22333 333334446677777777776666665432233334555555443
Q ss_pred ---ccCCHHHHHHHH
Q 043480 277 ---NSNQLDKAYMFM 288 (493)
Q Consensus 277 ---~~~~~~~a~~~~ 288 (493)
-.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 356666665544
No 345
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.61 E-value=19 Score=29.89 Aligned_cols=118 Identities=13% Similarity=0.046 Sum_probs=70.8
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHhcCChh
Q 043480 345 FLREGSSAMAEKLLNQMRGMNLSPDR-ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVIS-YNALINGLCKSSRVS 422 (493)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~ 422 (493)
|.....++.|...+.+.+.. .|+. .-|+.=+.++.+..+++.+..--.+.++. .||..- .-.+..++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 44455677777776666654 3554 44556666677777777777666666653 455432 333445556677788
Q ss_pred HHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 423 EAMHLYEEMQI----RGAHPDEVTFKLLIGGLVQEKKLELACRLWDQM 466 (493)
Q Consensus 423 ~a~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 466 (493)
+|+..+.+..+ ..+.|-......|..+=...=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 88888877632 334444555666665555555556666666655
No 346
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.50 E-value=0.97 Score=34.50 Aligned_cols=84 Identities=10% Similarity=0.051 Sum_probs=53.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 043480 131 VIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGR 210 (493)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 210 (493)
++..+.+.+.+....++++.+...+...+....+.++..|++.++.+...++++... ..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence 566677778888888888888866555567777888888888877777776655211 1222345666666666
Q ss_pred HHHHHHHHHHH
Q 043480 211 IRRAMAIKSFM 221 (493)
Q Consensus 211 ~~~a~~~~~~~ 221 (493)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666665554
No 347
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=82.05 E-value=12 Score=27.36 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 424 AMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 424 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
..+-+..+...++.|++.+...-+++|.+.+|+..|.++++-++.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344444555555666666666666666666666666666655543
No 348
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.04 E-value=32 Score=29.60 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=56.9
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH-----HcCCCCCHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQ-----IRGAHPDEVTF 443 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~ 443 (493)
+++.....|..+|.+.+|.++.++.+... +.+...+-.|+..+...||--.+.+.++++. +.|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 45667778899999999999999999863 5677888899999999999888988888873 34666654443
No 349
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=81.98 E-value=7.2 Score=22.90 Aligned_cols=34 Identities=12% Similarity=0.268 Sum_probs=22.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043480 450 LVQEKKLELACRLWDQMMEKGFTLDKTVSAALIE 483 (493)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 483 (493)
..+.|-.+++..++++|.+.|+..+...+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666677777777777777777776666654
No 350
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.74 E-value=5.2 Score=26.37 Aligned_cols=46 Identities=9% Similarity=0.064 Sum_probs=27.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 043480 417 KSSRVSEAMHLYEEMQIRGAHPD--EVTFKLLIGGLVQEKKLELACRL 462 (493)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 462 (493)
...+.+.|+..|+...+.-..|. -.++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777766655433321 34455566667777776665554
No 351
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.56 E-value=59 Score=32.27 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=40.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHc---
Q 043480 202 ISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCG-IEPDVYSYNQLLKGLCN--- 277 (493)
Q Consensus 202 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 277 (493)
...+.-.|++|.|.+.+-.. .+...+.+++...+..|.-.+-.+... ..+.... -.|.+.-+..++..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 45566789999999987762 222556666665555443222211111 2222111 01222556777777765
Q ss_pred cCCHHHHHHHHHHHHHc
Q 043480 278 SNQLDKAYMFMVKKMEA 294 (493)
Q Consensus 278 ~~~~~~a~~~~~~~~~~ 294 (493)
..+...|.+++--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 45777887777655543
No 352
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.49 E-value=1.1e+02 Score=35.22 Aligned_cols=317 Identities=11% Similarity=0.035 Sum_probs=154.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNC--RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
.+..+-.+++.+.+|+-.+++-..... ......+-.+...|...++++...-+...-.. .|+ .+.. +.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~~q-il~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LYQQ-ILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HHHH-HHHHHh
Confidence 566778888889999888887311100 11122233344478888888887777764111 232 2332 334556
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHH-HHHHH
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAA-LVVGL 170 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 170 (493)
.|++ +.|...|+.+.+. .++...+++-++......|.++.++-..+-.... ..+....++. =+.+-
T Consensus 1462 ~g~~-----------~da~~Cye~~~q~-~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaa 1528 (2382)
T KOG0890|consen 1462 SGNW-----------ADAAACYERLIQK-DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAA 1528 (2382)
T ss_pred hccH-----------HHHHHHHHHhhcC-CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHH
Confidence 6777 6777888888875 2334667777777777777787777755555443 1222233332 23344
Q ss_pred hccCchhHHHHHHHHHHhCCCCCChhhHHH--HHHHHHhc--CCHHHHHHHHHHHHHCC--------CCC-CHHHHHHHH
Q 043480 171 CGDGKVDLAYELTVGAMKGKVEFGVLIYNA--LISGFCRT--GRIRRAMAIKSFMKWNG--------CEP-DLVTYNAIL 237 (493)
Q Consensus 171 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~--~~~~~a~~~~~~~~~~~--------~~~-~~~~~~~ll 237 (493)
.+.++++....... .. +...|.. +.....+. .+.-.-.+..+.+.+.- ..- -...|..++
T Consensus 1529 W~l~qwD~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~ 1601 (2382)
T KOG0890|consen 1529 WRLSQWDLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILM 1601 (2382)
T ss_pred hhhcchhhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHH
Confidence 66777777666544 11 2222222 22222222 11111112222222111 010 012233333
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCC------hhhHHHHHHHHHccCCHHHHHHHHHHHHHcC------CCCChhhHHH
Q 043480 238 NYYCDEVMLDEAEKLVMEMESCGIEPD------VYSYNQLLKGLCNSNQLDKAYMFMVKKMEAK------GLRDKVSYNT 305 (493)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ 305 (493)
....-. +.....+... +..++ ..-|..-+..-....+..+-+-.+++..-.. ...-...|-.
T Consensus 1602 kLH~l~----el~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLq 1675 (2382)
T KOG0890|consen 1602 KLHLLL----ELENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQ 1675 (2382)
T ss_pred HHHHHH----HHHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHH
Confidence 222111 1111111111 11121 1222222221111111222222222221111 1112345667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 043480 306 VIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN 365 (493)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 365 (493)
..+.....|+++.|...+-...+.+ -+..+-..+...-..|+...|..+++...+..
T Consensus 1676 sAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1676 SARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 7777777899998887776666654 22445556666777899999999988887543
No 353
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.31 E-value=65 Score=32.64 Aligned_cols=222 Identities=14% Similarity=0.067 Sum_probs=115.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHH-HHHccCChHHHHHHHHHHHHC----CCCCChhhHHHHHH
Q 043480 206 CRTGRIRRAMAIKSFMKWNGCEPDLV-------TYNAILN-YYCDEVMLDEAEKLVMEMESC----GIEPDVYSYNQLLK 273 (493)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 273 (493)
....++.+|..+..++...-..|+.. .++.+-. .....|+++++.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 35678889988888876542222221 2333221 223578889999888887643 12234455666677
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHH-----HHHHHcCCHH--HHHHHHHHHHHcC---CC---cCHhHHHH
Q 043480 274 GLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVI-----EAFCKGGQTR--RAYKLFEGMRRRG---IE---LDVVTFTI 340 (493)
Q Consensus 274 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~--~a~~~~~~~~~~~---~~---~~~~~~~~ 340 (493)
+..-.|++++|..+.....+....-+...+.... ..+...|+.. +.+..+....... .+ +-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7778899999988887776643333443332222 2234456322 2233333332221 11 12233444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC--CCCCH--H--hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC----CHhhHHH
Q 043480 341 LIKAFLREGSSAMAEKLLNQMRGMN--LSPDR--I--LYTTIIDCLCKSREIGTAYGVFLDMVEQGITP----DVISYNA 410 (493)
Q Consensus 341 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~--~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~ 410 (493)
+..++.+ .+.+..-...-.+.+ ..|.. . .+..++......|+++.|...+.++......+ +..+-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555544 333222222111111 12222 2 22366777788999999999988887543222 2222222
Q ss_pred HHH--HHHhcCChhHHHHHHHH
Q 043480 411 LIN--GLCKSSRVSEAMHLYEE 430 (493)
Q Consensus 411 l~~--~~~~~g~~~~a~~~~~~ 430 (493)
.+. .....|+.+.+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 222 23356787777776665
No 354
>PRK10941 hypothetical protein; Provisional
Probab=81.08 E-value=31 Score=29.72 Aligned_cols=78 Identities=15% Similarity=0.028 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHh
Q 043480 409 NALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQEKKLELACRLWDQMMEK-GFTLDKTVSAALIEAIH 486 (493)
Q Consensus 409 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~ 486 (493)
+.+-.+|.+.++++.|+++.+.+... .| ++.-+.--.-.|.+.|.+..|..=++..++. .-.|+.......+..+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 44555667777777777777777764 34 4555666666777777777777777777655 44566666666666655
Q ss_pred hc
Q 043480 487 LQ 488 (493)
Q Consensus 487 ~~ 488 (493)
..
T Consensus 263 ~~ 264 (269)
T PRK10941 263 QK 264 (269)
T ss_pred hc
Confidence 43
No 355
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.67 E-value=49 Score=30.77 Aligned_cols=126 Identities=14% Similarity=0.110 Sum_probs=75.8
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCCh
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNF 95 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 95 (493)
|.--...|++-.|-+-+..++.. .+.++..-..........|+|+.+.+.+...-.. +.....+...+++.....+++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 44556667777775544444433 2445554444555677789999998888766432 344556777888888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 043480 96 TLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG 155 (493)
Q Consensus 96 ~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (493)
+.|...-.-|....++ +...........-..|-++++.-.|+++...+
T Consensus 374 -----------~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 374 -----------REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred -----------HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 4455555555544332 22332222333344567888888888876543
No 356
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.30 E-value=66 Score=32.05 Aligned_cols=103 Identities=11% Similarity=0.149 Sum_probs=59.5
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccC
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRV--FSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVK 93 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 93 (493)
+.-+.+.+.+++|+++.+.....- +. ....+..++..+...|++++|-...-.|.. .+...|..-+..+...+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~-~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNE-ERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCc-cccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcccc
Confidence 455677788888888776554421 11 234566777777778888888777777753 34445555555555555
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 043480 94 NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCK 137 (493)
Q Consensus 94 ~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 137 (493)
+.. .++.-+.......+...|..++..+..
T Consensus 438 ~l~--------------~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLT--------------DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccc--------------hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 442 222222221122355677777776665
No 357
>PRK10941 hypothetical protein; Provisional
Probab=79.89 E-value=23 Score=30.53 Aligned_cols=61 Identities=5% Similarity=-0.089 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL 73 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (493)
.+.|-.+|.+.++++.|+++.+.+...+ |.++.-+.--.-.|.+.|.+..|..=++..++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4556677788888888888888888775 666666777777788888888887777777654
No 358
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.70 E-value=11 Score=22.74 Aligned_cols=36 Identities=28% Similarity=0.252 Sum_probs=18.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043480 446 LIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIE 483 (493)
Q Consensus 446 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 483 (493)
+.-++.+.|++++|.+..+.+++. .|+..-...|-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHHH
Confidence 444555666666666666666643 555544444433
No 359
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=79.57 E-value=6.8 Score=33.68 Aligned_cols=82 Identities=10% Similarity=0.104 Sum_probs=66.6
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHH-HHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNR-FIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
.+++.|+..|...+.-..+.|.+.+.-.+|.+..+.. |.|+..|-. -..-+...++++.+..+|...++-+ +.++..
T Consensus 101 nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~i 178 (435)
T COG5191 101 NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-SRSPRI 178 (435)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccC-CCCchH
Confidence 3678899999999998888899999999999999986 888888875 3344677899999999999998876 555666
Q ss_pred HHHHH
Q 043480 82 YSRFI 86 (493)
Q Consensus 82 ~~~ll 86 (493)
|....
T Consensus 179 w~eyf 183 (435)
T COG5191 179 WIEYF 183 (435)
T ss_pred HHHHH
Confidence 65544
No 360
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.20 E-value=31 Score=27.70 Aligned_cols=90 Identities=9% Similarity=0.077 Sum_probs=62.0
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhH-----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 376 IIDCLCKSREIGTAYGVFLDMVEQGITPDVISY-----NALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGL 450 (493)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 450 (493)
+...+...++++.|..-++..+.. |....+ -.|.+.....|.+++|+..++...+.+. .......-.+++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence 344566788888888888877753 122222 2345566778888888888887665422 233445566888
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 043480 451 VQEKKLELACRLWDQMMEKG 470 (493)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~ 470 (493)
...|+-++|+.-|++.++.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 88889899999888888874
No 361
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.97 E-value=57 Score=30.52 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=26.6
Q ss_pred hcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCCh
Q 043480 56 RHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNF 95 (493)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 95 (493)
.++.++...++++.+...|....++.++.-...|.+.|..
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~t 68 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCT 68 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccc
Confidence 3566777777777777776666666666666666666654
No 362
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.80 E-value=44 Score=28.64 Aligned_cols=126 Identities=17% Similarity=0.037 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCC-----C-CCC-------hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcC
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSN-----C-RVF-------SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLT 78 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 78 (493)
...-++...-..|+..|++.-++-.+.= . .+. ......-|+++++.++|.+++...-+--+..-...
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 3334444555566666666665543320 0 011 11123335566666666666554444333211222
Q ss_pred hhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc-----cCCHHHHHHHH
Q 043480 79 PFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCK-----AKEFDKAVQAW 148 (493)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~ 148 (493)
+.....=|-.|++.+++ ...+++-.......-..+...|..++..|.. .|.+++|.++.
T Consensus 118 pkIleLCILLysKv~Ep-----------~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 118 PKILELCILLYSKVQEP-----------AAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHHhcCH-----------HHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 22233333345555555 3334444444433222233335544444332 35555555544
No 363
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=77.46 E-value=15 Score=29.05 Aligned_cols=67 Identities=7% Similarity=0.070 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHhhCCCCCC--hh-----hHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCC
Q 043480 25 IDQAVHVFDEMTQSNCRVF--SI-----DYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKN 94 (493)
Q Consensus 25 ~~~A~~~~~~~~~~~~~~~--~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 94 (493)
++.|+-+|+.+.+.-..|. .. .-...+.+|.+.|.+++|.+++++... .|+......-+....+.++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 5678999988876542221 11 122345679999999999999999977 3444444555555555544
No 364
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=76.92 E-value=21 Score=29.47 Aligned_cols=57 Identities=14% Similarity=0.231 Sum_probs=48.9
Q ss_pred HHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 043480 17 SNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG 74 (493)
Q Consensus 17 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (493)
.+..+.++.+.|.+++.++.+.- |.....|-.+...-.+.|+++.|.+.|++.++..
T Consensus 3 ~~~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 34567899999999999999874 6667788888888899999999999999998875
No 365
>PRK11619 lytic murein transglycosylase; Provisional
Probab=76.57 E-value=86 Score=31.32 Aligned_cols=145 Identities=12% Similarity=0.007 Sum_probs=67.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 043480 303 YNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK 382 (493)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (493)
...-+..-...++++.+...+..|.... .-...-.--+..++...|+.++|...|+.+... .+ .|..+... +
T Consensus 315 ~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~--fYG~LAa~--~ 386 (644)
T PRK11619 315 LERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RG--FYPMVAAQ--R 386 (644)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--cHHHHHHH--H
Confidence 3333444446667777666666664431 112233334455555567777777777766421 11 22221111 1
Q ss_pred cCCHhHH-HH---HHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043480 383 SREIGTA-YG---VFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLEL 458 (493)
Q Consensus 383 ~~~~~~a-~~---~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 458 (493)
.|..-.- .. .-... +. . ..-..-+..+...|+...|...+..+... .+......+.....+.|.++.
T Consensus 387 Lg~~~~~~~~~~~~~~~~----~~-~-~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ 457 (644)
T PRK11619 387 LGEEYPLKIDKAPKPDSA----LT-Q-GPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDL 457 (644)
T ss_pred cCCCCCCCCCCCCchhhh----hc-c-ChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHH
Confidence 1111000 00 00000 00 0 00112234455667777887777777653 344455556666666677666
Q ss_pred HHHHHH
Q 043480 459 ACRLWD 464 (493)
Q Consensus 459 a~~~~~ 464 (493)
+.....
T Consensus 458 ai~~~~ 463 (644)
T PRK11619 458 SVQATI 463 (644)
T ss_pred HHHHHh
Confidence 655543
No 366
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=75.81 E-value=85 Score=30.88 Aligned_cols=75 Identities=11% Similarity=0.153 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043480 286 MFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMR 362 (493)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 362 (493)
...+..+..-+..+...-.-++..|.+.|-.+.+.++.+.+-..-. ...-|..-+..+.+.|+...+..+-+.+.
T Consensus 391 ~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 391 ERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444444555556666666677766666666665554311 22334444445555555554444444333
No 367
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.47 E-value=31 Score=25.77 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=10.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 043480 412 INGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
.-++.+.++++.++++.+.+.+
T Consensus 78 Avg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 78 AVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh
Confidence 3344444555555554444444
No 368
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.44 E-value=53 Score=28.39 Aligned_cols=63 Identities=5% Similarity=-0.023 Sum_probs=34.7
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 043480 192 EFGVLIYNALISGFCRTGRIRRAMAIKSFMKWN-GCEPDLVTYNAILNYYCDEVMLDEAEKLVM 254 (493)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 254 (493)
.++..+....+..+++.++|.+-.+.++..... +...|...|..+|......|+..-...+.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 444555555566666666666666665555443 334455556666666666666554444443
No 369
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.25 E-value=15 Score=34.82 Aligned_cols=98 Identities=12% Similarity=0.083 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 043480 348 EGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHL 427 (493)
Q Consensus 348 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 427 (493)
.|+...|...+............+....+.+...+.|....|-.++.+.+... ...+.++-.+.+++....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 56666666666555432211122233444555555566666666666655442 22344555666666667777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHH
Q 043480 428 YEEMQIRGAHPDEVTFKLLI 447 (493)
Q Consensus 428 ~~~~~~~~~~p~~~~~~~l~ 447 (493)
|++..+...+ +.++-+.|.
T Consensus 699 ~~~a~~~~~~-~~~~~~~l~ 717 (886)
T KOG4507|consen 699 FRQALKLTTK-CPECENSLK 717 (886)
T ss_pred HHHHHhcCCC-ChhhHHHHH
Confidence 7776654322 344444443
No 370
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=73.34 E-value=8.3 Score=19.68 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=18.7
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 043480 23 GLIDQAVHVFDEMTQSNCRVFSIDYNRFIG 52 (493)
Q Consensus 23 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 52 (493)
|+.+.|..+|+++.... +.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHHH
Confidence 45677777777777653 456666665554
No 371
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=73.06 E-value=85 Score=29.66 Aligned_cols=181 Identities=14% Similarity=0.095 Sum_probs=115.8
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 043480 192 EFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQL 271 (493)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 271 (493)
+.|..+..+++..+..+..+.-+..+..+|..-| .+-..+..++..|... ..+.-..+++++.+..+ .|...-..+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 4466677778888888888888888888888764 4566777888888777 56777888888877653 333344444
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCC--Ch---hhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcCHhHHHHHHHHH
Q 043480 272 LKGLCNSNQLDKAYMFMVKKMEAKGLR--DK---VSYNTVIEAFCKGGQTRRAYKLFEGMRRR-GIELDVVTFTILIKAF 345 (493)
Q Consensus 272 ~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 345 (493)
...|.+ ++...+...|.++...-.+. +. ..|.-+.... ..+.+..+.+...+... |...-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444444 77788888888877653321 11 1344333211 34566666666666543 3333444555555667
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 043480 346 LREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCL 380 (493)
Q Consensus 346 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (493)
....++.+|++++..+.++. ..|...-..++..+
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 77888888888888888765 45555555555544
No 372
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=71.70 E-value=11 Score=34.69 Aligned_cols=106 Identities=17% Similarity=0.128 Sum_probs=71.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCC
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKN 94 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 94 (493)
-+.-+.+.++++.|+.++.++++.+ +..+..|..-..++.+.+++..|+.=+..+++.. +-....|..-..++.+.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 3556778899999999999999975 4444444445578899999999998888887764 2222334333444445555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 043480 95 FTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGL 135 (493)
Q Consensus 95 ~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 135 (493)
+ .+|+..|+.... ..|+..-....+.-|
T Consensus 88 ~-----------~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 F-----------KKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred H-----------HHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 5 566677777766 566666665555544
No 373
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.65 E-value=1.2e+02 Score=30.25 Aligned_cols=184 Identities=10% Similarity=-0.008 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHh-CCCCCC--HhhHHHHHHHHh-ccCCHHHHHHHHHHHHHCCCCCCH-----HhHHHHHHHHhccCchh
Q 043480 107 KLALEVFHKMVS-KGREPD--VVTYTIVIDGLC-KAKEFDKAVQAWEHMIENGIKPDN-----KACAALVVGLCGDGKVD 177 (493)
Q Consensus 107 ~~a~~~~~~~~~-~g~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~ 177 (493)
..|+..++.+.+ ...+|. ..++..+...+. ...+++.|...+++....--.++- .+...++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 566777777763 223333 235555666555 678999999999987543222222 12334566666666665
Q ss_pred HHHHHHHHHHhCCCC----CChhhHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--ccCChH
Q 043480 178 LAYELTVGAMKGKVE----FGVLIYNAL-ISGFCRTGRIRRAMAIKSFMKWNG---CEPDLVTYNAILNYYC--DEVMLD 247 (493)
Q Consensus 178 ~a~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~--~~~~~~ 247 (493)
|...+++.++.--. +-...|.-+ +..+...++...|.+.++.+.... ..|....+..++.+.. ..+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888876653211 122233333 233333479999999988876532 2444444555554443 456667
Q ss_pred HHHHHHHHHHHCC---------CCCChhhHHHHHHHH--HccCCHHHHHHHHHHH
Q 043480 248 EAEKLVMEMESCG---------IEPDVYSYNQLLKGL--CNSNQLDKAYMFMVKK 291 (493)
Q Consensus 248 ~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 291 (493)
++.+.++.+.... ..|...+|..+++.+ ...|+++.+...++.+
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777663211 123455666666544 4567766655544433
No 374
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.64 E-value=1.1e+02 Score=30.03 Aligned_cols=28 Identities=21% Similarity=0.073 Sum_probs=13.1
Q ss_pred CHHhHHHHHHHHhccCchhHHHHHHHHH
Q 043480 159 DNKACAALVVGLCGDGKVDLAYELTVGA 186 (493)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 186 (493)
+......++..|.+.|-.+.+.++.+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~ 431 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKIL 431 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344445555555555555555544433
No 375
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.61 E-value=29 Score=28.14 Aligned_cols=32 Identities=16% Similarity=0.075 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 437 HPDEVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 437 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
.|++.+|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666666666666666666666665554
No 376
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.05 E-value=69 Score=27.30 Aligned_cols=183 Identities=13% Similarity=0.081 Sum_probs=94.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHHcC
Q 043480 243 EVMLDEAEKLVMEMESCGIEPDV---YSYNQLLKGLCNSNQLDKAYMFMVKKMEA-----KGLRDKVSYNTVIEAFCKGG 314 (493)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~ 314 (493)
..++++|+.-|+...+..-+... .....++..+.+.+++++....+.+++.- ...-+..+.|.++...+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 44677777777777654322222 23345566777777777777777666531 11123445566666555555
Q ss_pred CHHHHHHHHHHHHHc-----CCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CCC-------HHhHHHHHH
Q 043480 315 QTRRAYKLFEGMRRR-----GIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNL----SPD-------RILYTTIID 378 (493)
Q Consensus 315 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~-------~~~~~~l~~ 378 (493)
+.+-..+.|+.-... +-+.-..|-..+...|...+.+.+..+++.++...-- ..| ...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 555444444432211 1222223445566666666667776666666643210 111 235555566
Q ss_pred HHHccCCHhHHHHHHHHHHhCC-CCCCHhhHHHHHHHH-----HhcCChhHHHH
Q 043480 379 CLCKSREIGTAYGVFLDMVEQG-ITPDVISYNALINGL-----CKSSRVSEAMH 426 (493)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~-----~~~g~~~~a~~ 426 (493)
.|....+-..-..+|++.+... --|.+... ..|+-| .+.|++++|-.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHh
Confidence 6666666666666666655321 12333322 233332 34566666644
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.95 E-value=20 Score=23.75 Aligned_cols=47 Identities=13% Similarity=0.096 Sum_probs=30.3
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCChhHHHHHH
Q 043480 382 KSREIGTAYGVFLDMVEQGITPD--VISYNALINGLCKSSRVSEAMHLY 428 (493)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~ 428 (493)
...+.++|+..|...++.-..|. ..++..++.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888877776522222 235666777777888877776653
No 378
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=68.56 E-value=1.4e+02 Score=30.23 Aligned_cols=203 Identities=12% Similarity=0.083 Sum_probs=97.7
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCC
Q 043480 41 RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKG 120 (493)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g 120 (493)
..+...+..||..+.+.|+.++....-..|.+.- +.++..|...+........- ... ..+...|++.+..
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s-~~~-------~~v~~~~ekal~d- 179 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQS-EER-------KEVEELFEKALGD- 179 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccC-cch-------hHHHHHHHHHhcc-
Confidence 3445556677777788888777666666665442 45555565555443332221 111 3444555555432
Q ss_pred CCCCHhhHHHHHHHHh-------ccCCHHHHHHHHHHHHHC-CCCCC-----HHhHHHHHHHHhccCchhHHHHHHHHHH
Q 043480 121 REPDVVTYTIVIDGLC-------KAKEFDKAVQAWEHMIEN-GIKPD-----NKACAALVVGLCGDGKVDLAYELTVGAM 187 (493)
Q Consensus 121 ~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 187 (493)
..++..|.-.+.... +.++++....+|.+.... |...+ ...|..+-..|..+-..++...+|..-+
T Consensus 180 -y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el 258 (881)
T KOG0128|consen 180 -YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVREL 258 (881)
T ss_pred -cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 223444444443322 235566666667666542 22221 2223333333444444456666666655
Q ss_pred hCCCCCChhhHHHHHHHHH-------hcCCHHHHHH-------HHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 043480 188 KGKVEFGVLIYNALISGFC-------RTGRIRRAMA-------IKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLV 253 (493)
Q Consensus 188 ~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 253 (493)
..+. |..+-+.-..--. ...+.+.+.+ .+++..+. .++-...|...+..+...|++......+
T Consensus 259 ~~~~--D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~ 335 (881)
T KOG0128|consen 259 KQPL--DEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIE 335 (881)
T ss_pred hccc--hhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 5432 2222111111111 1122233322 22222222 1333445677777788888887777777
Q ss_pred HHHH
Q 043480 254 MEME 257 (493)
Q Consensus 254 ~~~~ 257 (493)
+++.
T Consensus 336 eR~~ 339 (881)
T KOG0128|consen 336 ERAV 339 (881)
T ss_pred HHHH
Confidence 7665
No 379
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=67.17 E-value=75 Score=26.65 Aligned_cols=118 Identities=16% Similarity=0.023 Sum_probs=77.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHccCCHh
Q 043480 310 FCKGGQTRRAYKLFEGMRRRGIELDV-VTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRI-LYTTIIDCLCKSREIG 387 (493)
Q Consensus 310 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 387 (493)
|.....++.|...|.+.+.. .|+. .-|+.-+.++.+..+++.+..--....+. .|+.. .--.+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 45556788888888777765 4555 44566677778888888887766666654 45544 3334555567778899
Q ss_pred HHHHHHHHHHh----CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043480 388 TAYGVFLDMVE----QGITPDVISYNALINGLCKSSRVSEAMHLYEEM 431 (493)
Q Consensus 388 ~a~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 431 (493)
.|...+.+... ..++|-......|..+=-..=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 99999988853 334455556666666544444555666666654
No 380
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=66.86 E-value=1.1e+02 Score=28.27 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=33.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCHh--HHHHHHHHHH--HcCCHHHHHHHHHHHHhC
Q 043480 309 AFCKGGQTRRAYKLFEGMRRRGIELDVV--TFTILIKAFL--REGSSAMAEKLLNQMRGM 364 (493)
Q Consensus 309 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 364 (493)
.+...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344677888888888887775 444443 3334444443 255677777777766643
No 381
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=66.64 E-value=6.6 Score=29.04 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=14.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043480 453 EKKLELACRLWDQMMEKGFTLDKTVSAALIEA 484 (493)
Q Consensus 453 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 484 (493)
.|.-.+|.++|++|++.|-+||. |..|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34444455555555555555442 4444443
No 382
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=66.58 E-value=48 Score=25.36 Aligned_cols=60 Identities=10% Similarity=0.124 Sum_probs=26.2
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 043480 359 NQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSS 419 (493)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 419 (493)
..+.+.|++++..= ..++..+...++.-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444444444331 2334444444444556666666555544333333333333333333
No 383
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.43 E-value=55 Score=31.36 Aligned_cols=86 Identities=16% Similarity=0.093 Sum_probs=44.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHH
Q 043480 278 SNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKL 357 (493)
Q Consensus 278 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 357 (493)
.|+...|...+..+....+....+..-.+.+...+.|..-.|-.++.+..... ...+-++-.+..++....++++|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45555555555555444333333334444445555555555555555544432 22344555555566666666666666
Q ss_pred HHHHHhC
Q 043480 358 LNQMRGM 364 (493)
Q Consensus 358 ~~~~~~~ 364 (493)
|+...+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 6655544
No 384
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=66.24 E-value=1.4e+02 Score=29.43 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=56.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCChh------HHHHHHHHhccCCCCcChhhHHHH
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSN--CRVFSIDYNRFIGVLIRHSRFD------LVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
+|..+|..+|++-.+.++++.+...+ .+.-...+|..++...++|+++ .|.+++++.. +.-|..+|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78999999999999999999987653 2333556888999999999874 5566666654 35677778777
Q ss_pred HHHHhc
Q 043480 86 ISGLCE 91 (493)
Q Consensus 86 l~~~~~ 91 (493)
+++-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766544
No 385
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=66.20 E-value=1.2e+02 Score=28.73 Aligned_cols=181 Identities=11% Similarity=0.042 Sum_probs=125.0
Q ss_pred CCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043480 157 KPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAI 236 (493)
Q Consensus 157 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 236 (493)
..|...+..++..+..+..+.-...+..++...+ -+-..|..++.+|..+ ..++-..+++++.+.. -+......-
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHH
Confidence 3467778889999999999999999999998865 3667888999999998 5577888888888764 233334433
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCC-----ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHH
Q 043480 237 LNYYCDEVMLDEAEKLVMEMESCGIEP-----DVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGL-RDKVSYNTVIEAF 310 (493)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 310 (493)
+..+...++...+..+|..+...-++. -...|..+.... ..+.+..+.+..++....+. .-.+.+.-+-.-|
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444445588899999998887543321 123454444321 45667777766666554332 2344566666778
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHH
Q 043480 311 CKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAF 345 (493)
Q Consensus 311 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (493)
....++.+|++++..+.+..-+ |...-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 8899999999999999887533 666655666544
No 386
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=65.91 E-value=20 Score=31.05 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043480 444 KLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVS 478 (493)
Q Consensus 444 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 478 (493)
+.-|....+.||+++|+++++++.+.|+.--..++
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 35555555555555555555555555554444443
No 387
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=65.91 E-value=20 Score=22.53 Aligned_cols=30 Identities=27% Similarity=0.216 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 439 DEVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
|..-.-.++.+|...|++++|.++++.+.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444556666666666666666665543
No 388
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=65.88 E-value=23 Score=22.53 Aligned_cols=49 Identities=12% Similarity=0.120 Sum_probs=35.0
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIR 56 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 56 (493)
+....++.++..+++..-+++++..++++.+.| ..+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 455667788888888888888888888888877 4566667666666654
No 389
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=64.70 E-value=1.1e+02 Score=27.49 Aligned_cols=118 Identities=12% Similarity=0.031 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc---cCCHhHHHHHH
Q 043480 317 RRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK---SREIGTAYGVF 393 (493)
Q Consensus 317 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~ 393 (493)
+.-+.++++..+.++ .+.......+..+.+..+.+...+.|+.+.... +-+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 445566777666633 455666667777777777777777787777654 4466777777766543 22455666666
Q ss_pred HHHHhC------CC----CCCH-------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 043480 394 LDMVEQ------GI----TPDV-------ISYNALINGLCKSSRVSEAMHLYEEMQIRGA 436 (493)
Q Consensus 394 ~~~~~~------~~----~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 436 (493)
.+.+.. +. .+.. .++..+...+..+|-.+.|..+++-+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 555421 11 0111 1222333334567888888888888877654
No 390
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=64.50 E-value=45 Score=23.10 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=37.0
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043480 90 CEVKNFTLINILLDNMDKLALEVFHKMVSKGREPD----VVTYTIVIDGLCKAKEFDKAVQAWEHMIE 153 (493)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (493)
.+.+++..|. +...+.|+.....+.... ......+.......|++++|.+.+++.+.
T Consensus 9 ~~~~dy~~A~-------d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEAL-------DALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHH-------HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678887777 555566666655543331 22333455667788999999999988764
No 391
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.43 E-value=23 Score=25.40 Aligned_cols=27 Identities=4% Similarity=0.109 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhcc
Q 043480 46 DYNRFIGVLIRHSRFDLVQFYYQQMHP 72 (493)
Q Consensus 46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 72 (493)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488888888888999999999888876
No 392
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=64.22 E-value=83 Score=26.09 Aligned_cols=30 Identities=10% Similarity=0.008 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043480 441 VTFKLLIGGLVQEKKLELACRLWDQMMEKG 470 (493)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 470 (493)
.....+.....+.|+.++|.+.+.++...+
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 444455666777788888888888887763
No 393
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=63.96 E-value=84 Score=26.06 Aligned_cols=71 Identities=13% Similarity=0.092 Sum_probs=44.9
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 043480 81 TYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPD-----VVTYTIVIDGLCKAKEFDKAVQAWEHMIENG 155 (493)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (493)
.+..+.-.|...++.+.....+ ..|++.|.+.......|. ....-.+.....+.|++++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl----~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFL----RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHH----HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3344444555666654444444 677888888776533221 2233345567778899999999999998764
No 394
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.91 E-value=43 Score=22.76 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=42.6
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhh
Q 043480 28 AVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTL 97 (493)
Q Consensus 28 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 97 (493)
+.++++...++| -.+......+-.+--..|+.+.|.+++..+. +| | .+|..++.++...|...-
T Consensus 21 ~~~v~d~ll~~~-ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 21 TRDVCDKCLEQG-LLTEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHEL 84 (88)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhh
Confidence 556777887777 2223333333332236689999999999997 53 4 357888998888887643
No 395
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=63.48 E-value=88 Score=26.17 Aligned_cols=102 Identities=16% Similarity=0.251 Sum_probs=57.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh-CC-----------CCCCHHhHHHHH
Q 043480 310 FCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRG-MN-----------LSPDRILYTTII 377 (493)
Q Consensus 310 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-----------~~~~~~~~~~l~ 377 (493)
|.+..+..---++.+-....+++-+...+.+++ +...||...|...++.-.. .| -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 333333333334444444445554555555544 3457777777777665432 11 146666677777
Q ss_pred HHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 043480 378 DCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGL 415 (493)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 415 (493)
..|. .+++++|.+++.++-+.|+.|.. ..+.+.+.+
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 6654 46788888888888888877643 334444443
No 396
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=63.19 E-value=1.1e+02 Score=26.99 Aligned_cols=21 Identities=19% Similarity=0.053 Sum_probs=10.5
Q ss_pred CHHhHHHHHHHHhccCchhHH
Q 043480 159 DNKACAALVVGLCGDGKVDLA 179 (493)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a 179 (493)
|...|..+..+|...|+...+
T Consensus 196 d~~~Y~~v~~AY~lLgk~~~~ 216 (291)
T PF10475_consen 196 DPDKYSKVQEAYQLLGKTQSA 216 (291)
T ss_pred CHHHHHHHHHHHHHHhhhHHH
Confidence 444555555555555544433
No 397
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=63.01 E-value=49 Score=30.45 Aligned_cols=69 Identities=14% Similarity=0.283 Sum_probs=45.3
Q ss_pred hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 043480 80 FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMI 152 (493)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (493)
++...|++.++-.||+..|.++++.+.-.-..+|.+. ..-.+.++-.+.-+|.-.+++.+|.+.|....
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V----~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKV----PACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccC----cchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888899999777666655431111233222 23345667777778888888999998888765
No 398
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=62.82 E-value=32 Score=20.80 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=16.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 043480 411 LINGLCKSSRVSEAMHLYEEMQIRGAHPD 439 (493)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 439 (493)
+.-++.+.|++++|.+..+.+.+. .|+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~ 33 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPD 33 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 445566777777777777777663 454
No 399
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.62 E-value=48 Score=25.36 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=43.7
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCC
Q 043480 31 VFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKN 94 (493)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 94 (493)
+.+.+.+.|.+.++ .-..++..+.+.++.-.|.++|+++.+.++..+..|...-+..+...|=
T Consensus 8 ~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 33445556655543 3566788888888889999999999988766666666555666666553
No 400
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.20 E-value=1.4e+02 Score=27.91 Aligned_cols=17 Identities=0% Similarity=0.063 Sum_probs=8.4
Q ss_pred HHHHhccCCHHHHHHHH
Q 043480 132 IDGLCKAKEFDKAVQAW 148 (493)
Q Consensus 132 ~~~~~~~~~~~~a~~~~ 148 (493)
+...+..|+.+.+..++
T Consensus 72 L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 72 LHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 33444556665544443
No 401
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=62.09 E-value=23 Score=32.78 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=42.1
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChhH
Q 043480 346 LREGSSAMAEKLLNQMRGMNLSPDRI-LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD-VISYNALINGLCKSSRVSE 423 (493)
Q Consensus 346 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 423 (493)
...+.++.|..++..+++. .||.. .|..=..++.+.+++..|+.=...+++.. |+ ...|-.=..++.+.+.+.+
T Consensus 15 l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred cccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHH
Confidence 3344555555555555543 23322 22222244555555555555555555432 22 1122222233333444444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 424 AMHLYEEMQIRGAHPDEVTFKLLIGGL 450 (493)
Q Consensus 424 a~~~~~~~~~~~~~p~~~~~~~l~~~~ 450 (493)
|...|+.... +.|+..-....+.-|
T Consensus 91 A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 91 ALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 4444444433 344444444444333
No 402
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=61.11 E-value=74 Score=25.40 Aligned_cols=67 Identities=10% Similarity=0.170 Sum_probs=37.8
Q ss_pred HhHHHHHHHHHHhCCCCCC--HhhH-----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043480 386 IGTAYGVFLDMVEQGITPD--VISY-----NALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKK 455 (493)
Q Consensus 386 ~~~a~~~~~~~~~~~~~p~--~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 455 (493)
++.|+.+|+.+.+.--.|+ .... ...+-.|.+.|.+++|.+++++..+ .|+......-+....+..|
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 5678888877776522221 1111 2234467777888888888877765 3444444554544444443
No 403
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.08 E-value=1.3e+02 Score=27.47 Aligned_cols=62 Identities=16% Similarity=-0.047 Sum_probs=34.1
Q ss_pred hHHHHHHHHhccCchhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 162 ACAALVVGLCGDGKVDLAYELTVGAMKGK--VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKW 223 (493)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 223 (493)
.+..+...|..+|+++.|.+.+.+..+.- ....+..|..+|..-.-.|+|.....+..+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 44556666666666666666666643310 112334455555556666666666665555543
No 404
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=60.87 E-value=75 Score=27.04 Aligned_cols=93 Identities=17% Similarity=0.211 Sum_probs=53.2
Q ss_pred HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc-----C--------CC---------C---CH
Q 043480 386 IGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR-----G--------AH---------P---DE 440 (493)
Q Consensus 386 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--------~~---------p---~~ 440 (493)
.++|..+++.-... ..+..+...+..++...|+...+..+++.+... + .. + ++
T Consensus 115 i~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~v 192 (246)
T PF07678_consen 115 INKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDV 192 (246)
T ss_dssp HHHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHH
T ss_pred HHHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHH
Confidence 34455555554332 345555555556666677777777777776432 0 00 0 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHH
Q 043480 441 VTFKLLIGGLVQEKKLELACRLWDQMMEK-----GFTLDKTVSAA 480 (493)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~ 480 (493)
++-...+-++.+.++.+.+..+.+.+.+. |+..+..|.-+
T Consensus 193 EtTaYaLLa~l~~~~~~~~~~iv~WL~~qr~~~Ggf~STQdTvva 237 (246)
T PF07678_consen 193 ETTAYALLALLKRGDLEEASPIVRWLISQRNSGGGFGSTQDTVVA 237 (246)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHCTTTTSSTSSHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCCCccCcHHHHHHH
Confidence 33333344566669999999999888875 45544444433
No 405
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.60 E-value=8.3 Score=33.76 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=64.6
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcCh-hhHHHHHHHHhccCChhh
Q 043480 19 LVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTP-FTYSRFISGLCEVKNFTL 97 (493)
Q Consensus 19 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~ 97 (493)
....|.++.|++.|...++.+ ++....|..-.+++++.++...|++=+...+..+ ||. .-|-.--.+....|+|
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~-- 198 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNW-- 198 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhch--
Confidence 455689999999999999886 7777777778888999999999998888887754 332 3333333444556777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCHh
Q 043480 98 INILLDNMDKLALEVFHKMVSKGREPDVV 126 (493)
Q Consensus 98 a~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 126 (493)
..|...|....+.+..+...
T Consensus 199 ---------e~aa~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 199 ---------EEAAHDLALACKLDYDEANS 218 (377)
T ss_pred ---------HHHHHHHHHHHhccccHHHH
Confidence 44445555555554444333
No 406
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.51 E-value=1e+02 Score=25.86 Aligned_cols=14 Identities=7% Similarity=0.351 Sum_probs=8.0
Q ss_pred cCChhHHHHHHHHh
Q 043480 57 HSRFDLVQFYYQQM 70 (493)
Q Consensus 57 ~~~~~~a~~~~~~~ 70 (493)
.+++++|.++|.+.
T Consensus 27 ~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 27 SNKYEEAAELYERA 40 (288)
T ss_pred CcchHHHHHHHHHH
Confidence 34566666666554
No 407
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.43 E-value=27 Score=21.89 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=8.6
Q ss_pred HHHHHHccCChHHHHHHHHHH
Q 043480 236 ILNYYCDEVMLDEAEKLVMEM 256 (493)
Q Consensus 236 ll~~~~~~~~~~~a~~~~~~~ 256 (493)
+|.++...|++++|.++++.+
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444433
No 408
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=59.56 E-value=25 Score=18.54 Aligned_cols=26 Identities=8% Similarity=0.222 Sum_probs=16.1
Q ss_pred ChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 043480 24 LIDQAVHVFDEMTQSNCRVFSIDYNRFI 51 (493)
Q Consensus 24 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 51 (493)
.++.|+.+|++.... .|++.+|....
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHHHH
Confidence 456777777777664 36666665443
No 409
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=58.62 E-value=3.6e+02 Score=31.56 Aligned_cols=151 Identities=11% Similarity=-0.010 Sum_probs=91.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 043480 130 IVIDGLCKAKEFDKAVQAWEHMIENGI--KPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCR 207 (493)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (493)
.+..+=.+++.+.+|+-.++.-..... .....-+..+...|...+++|...-+...... +...+. -+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHh
Confidence 445566678889999988888421111 11223344445588888998888777664221 222333 3445667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHH-HHHHHHHccCCHHHHHH
Q 043480 208 TGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYN-QLLKGLCNSNQLDKAYM 286 (493)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~ 286 (493)
.|++..|...|+.+.+.+ ++...+++-++......|.++......+-..... .+....++ .-+.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999875 4557777777777667777777666544443221 22222222 22344456677766655
Q ss_pred HH
Q 043480 287 FM 288 (493)
Q Consensus 287 ~~ 288 (493)
..
T Consensus 1540 ~l 1541 (2382)
T KOG0890|consen 1540 YL 1541 (2382)
T ss_pred hh
Confidence 43
No 410
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=58.59 E-value=12 Score=27.73 Aligned_cols=32 Identities=6% Similarity=0.010 Sum_probs=24.2
Q ss_pred hcCChhHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 043480 56 RHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGL 89 (493)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 89 (493)
.-|.-..|..+|++|+.+|.+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667899999999999977775 67777543
No 411
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.48 E-value=1.1e+02 Score=25.65 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=27.3
Q ss_pred HHccCCHhHHHHHHHHHHhCCCCCCHhhHHH---H---HHHHHhcCChhHHHHHHHHHHHc
Q 043480 380 LCKSREIGTAYGVFLDMVEQGITPDVISYNA---L---INGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~---l---~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
-+..+++..|.++|+++....+..+..-|.. + .-++.-..|.-.+.+.+++..+.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 3456677777777777765533333222211 1 11222235555555666665553
No 412
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.43 E-value=1.5e+02 Score=27.19 Aligned_cols=100 Identities=7% Similarity=0.007 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccC--CCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 043480 46 DYNRFIGVLIRHSRFDLVQFYYQQMHPL--GFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREP 123 (493)
Q Consensus 46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~ 123 (493)
.+.-+...|...|+++.|++.|.+.+.. ........+..++..-.-.++|........+.....-. +...... +++
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~-~~~~~q~-v~~ 229 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDA-NENLAQE-VPA 229 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh-hhhHHHh-cCc
Confidence 3455666777777777777777775432 11222334444555555556665444333322211100 1222221 444
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHH
Q 043480 124 DVVTYTIVIDGLCKAKEFDKAVQAWE 149 (493)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~ 149 (493)
....+..+.....+ ++..|...|-
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL 253 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFL 253 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHH
Confidence 45555555554443 6666655553
No 413
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.07 E-value=36 Score=19.96 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=18.1
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043480 416 CKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLI 447 (493)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 447 (493)
.+.|-.+++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555666666666666655555555544
No 414
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.96 E-value=57 Score=26.43 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=13.2
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043480 403 PDVISYNALINGLCKSSRVSEAMHLYEEMQ 432 (493)
Q Consensus 403 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 432 (493)
|+..+|..++.++...|+.++|.+..+++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 415
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=57.06 E-value=66 Score=22.64 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=31.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 043480 202 ISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCG 260 (493)
Q Consensus 202 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 260 (493)
+..+...|++++|..+.+.+ ..||...|.++.. .+.|..+.+..-+..+..+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34555667777777666555 2666666655543 25555565666565665554
No 416
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=56.91 E-value=1.8e+02 Score=27.60 Aligned_cols=228 Identities=13% Similarity=0.117 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc------CCHHHHHHHHHHHHHcCCC-C-ChhhHHHHHHHHHHcCCHHH
Q 043480 247 DEAEKLVMEMESCGIEPDVYSYNQLLKGLCNS------NQLDKAYMFMVKKMEAKGL-R-DKVSYNTVIEAFCKGGQTRR 318 (493)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~ 318 (493)
+....+|++..+. -|+...|...|..|... ........+++.....+.. + ....|..+.-.++......+
T Consensus 299 s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 299 SRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Confidence 3344666666542 35556666666655432 1334445555555543222 1 23345555555554443322
Q ss_pred -HHHHHHHHHHcCCCcCHhHHHHHHHHHHHc-CCHHH-HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC-HhH--HHHH
Q 043480 319 -AYKLFEGMRRRGIELDVVTFTILIKAFLRE-GSSAM-AEKLLNQMRGMNLSPDRILYTTIIDCLCKSRE-IGT--AYGV 392 (493)
Q Consensus 319 -a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~--a~~~ 392 (493)
|+.+..+. ...+...|..-+....+. .+.+- ...++..+...-..+....|+... .|+ ++. -..+
T Consensus 377 ~a~~l~~e~----f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~I 447 (568)
T KOG2396|consen 377 VAVKLTTEL----FRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLI 447 (568)
T ss_pred HHHHhhHHH----hcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHH
Confidence 33333222 333555555444444422 12221 223344444432233344444443 222 211 1222
Q ss_pred HHHHHhCCCCCCHhhH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHc
Q 043480 393 FLDMVEQGITPDVISY-NALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQ--EKKLELACRLWDQMMEK 469 (493)
Q Consensus 393 ~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~ 469 (493)
+...... ..|+..++ +.++.-+...|-..+|...+..+... ++|+...|..++..-.. .-+...+.+.++.|...
T Consensus 448 i~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~ 525 (568)
T KOG2396|consen 448 ISALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE 525 (568)
T ss_pred HHHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH
Confidence 3333333 34555544 56778888899999999999999875 45588888888754332 22388899999999886
Q ss_pred -CCCCCHHHHHHHHHHHhhch
Q 043480 470 -GFTLDKTVSAALIEAIHLQD 489 (493)
Q Consensus 470 -~~~~~~~~~~~ll~~~~~~~ 489 (493)
| .|+..|-..+.-=...|
T Consensus 526 fg--~d~~lw~~y~~~e~~~g 544 (568)
T KOG2396|consen 526 FG--ADSDLWMDYMKEELPLG 544 (568)
T ss_pred hC--CChHHHHHHHHhhccCC
Confidence 5 78888887766544444
No 417
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.55 E-value=1.3e+02 Score=25.79 Aligned_cols=205 Identities=11% Similarity=0.108 Sum_probs=129.3
Q ss_pred CCCCChhhHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHH---CCC-
Q 043480 190 KVEFGVLIYNALISGF-CRTGRIRRAMAIKSFMKWNGCEPDL---VTYNAILNYYCDEVMLDEAEKLVMEMES---CGI- 261 (493)
Q Consensus 190 ~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~- 261 (493)
+..|++..=|..-.+- .+...+++|+.-|.+..+..-.... .....++....+.+++++....+.++.. +.+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3456665544332221 2345799999999998875323333 3445678888999999999999998753 111
Q ss_pred -CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCChhh----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---
Q 043480 262 -EPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAK-GLRDKVS----YNTVIEAFCKGGQTRRAYKLFEGMRRRGIE--- 332 (493)
Q Consensus 262 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 332 (493)
.-+..+.+.++.....+.+.+.-..+++..+..- ...+... -.-+...|...+.+.+..+++.++....-.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 1345667888887777777777777666554421 1123322 245677788888899999999888654111
Q ss_pred --------cCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHH-----HccCCHhHHHHHHHH
Q 043480 333 --------LDVVTFTILIKAFLREGSSAMAEKLLNQMRGM-NLSPDRILYTTIIDCL-----CKSREIGTAYGVFLD 395 (493)
Q Consensus 333 --------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~ 395 (493)
.-...|..-+..|....+-.+...+++..... .--|.+... .+|+-| .+.|++++|..-|-+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHH
Confidence 11345667777888888888888888876542 223555544 344444 456788877544433
No 418
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.21 E-value=10 Score=33.28 Aligned_cols=80 Identities=11% Similarity=-0.022 Sum_probs=65.2
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
|+..|++..+|..-.+.+++.+++..|++=++..++.+ +-+...|-.-..+..-.|+|++|...++...+.+..+....
T Consensus 141 i~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 141 IELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANSA 219 (377)
T ss_pred cccCCchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHHH
Confidence 67788999999999999999999999999999998875 44455566666677778999999999999988876655543
Q ss_pred H
Q 043480 82 Y 82 (493)
Q Consensus 82 ~ 82 (493)
+
T Consensus 220 ~ 220 (377)
T KOG1308|consen 220 T 220 (377)
T ss_pred H
Confidence 3
No 419
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=55.40 E-value=92 Score=23.81 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCcCHhHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHhHHHH
Q 043480 303 YNTVIEAFCKGGQTRRAYKLFEGMRRRG-----IELDVVTFTILIKAFLREGS-SAMAEKLLNQMRGMNLSPDRILYTTI 376 (493)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 376 (493)
.+.++......+++...+.+++.+..-. -..+..+|.+++.+.++... .-.+..+|.-+++.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444444444555555555555542210 01244556666666654444 33445566666665556666666666
Q ss_pred HHHHHc
Q 043480 377 IDCLCK 382 (493)
Q Consensus 377 ~~~~~~ 382 (493)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 666544
No 420
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.98 E-value=68 Score=22.17 Aligned_cols=18 Identities=22% Similarity=0.128 Sum_probs=9.1
Q ss_pred HHHhcCChhHHHHHHHHH
Q 043480 414 GLCKSSRVSEAMHLYEEM 431 (493)
Q Consensus 414 ~~~~~g~~~~a~~~~~~~ 431 (493)
.+...|++++|...+++.
T Consensus 50 ~~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 334445555555555554
No 421
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=54.71 E-value=67 Score=29.29 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=32.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHhHHHHHHHHhccCchhHHHHHHHHHH
Q 043480 130 IVIDGLCKAKEFDKAVQAWEHMIEN--GIKPDNKACAALVVGLCGDGKVDLAYELTVGAM 187 (493)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 187 (493)
-|++.+.-.|+++...+.++.|... |-.|....-..+.-+|.-.+++.+|.+.|..++
T Consensus 240 GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 240 GLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 3455556667766666666666543 223332222344555666667777777666554
No 422
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.11 E-value=2e+02 Score=27.25 Aligned_cols=42 Identities=10% Similarity=0.088 Sum_probs=34.6
Q ss_pred HHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 043480 20 VKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFD 61 (493)
Q Consensus 20 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 61 (493)
...+.++.-+++++.+...|....++.+|.-...|.+.|...
T Consensus 28 f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 28 FNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred cCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 456899999999999999887777777888888888888764
No 423
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.01 E-value=34 Score=29.72 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043480 197 IYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTY 233 (493)
Q Consensus 197 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 233 (493)
-|+..|....+.|++++|++++++..+.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3456666666666666666666666666644333333
No 424
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=53.50 E-value=54 Score=20.60 Aligned_cols=49 Identities=16% Similarity=0.057 Sum_probs=26.0
Q ss_pred HHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH-----HHhcCChhHHHHH
Q 043480 18 NLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGV-----LIRHSRFDLVQFY 66 (493)
Q Consensus 18 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~ 66 (493)
.+...|++=+|-++++.+......+....+..+|.+ ..+.|+...|..+
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 345567777777777777654323334444444433 2355666666554
No 425
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.35 E-value=1e+02 Score=26.24 Aligned_cols=56 Identities=11% Similarity=-0.038 Sum_probs=27.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043480 410 ALINGLCKSSRVSEAMHLYEEMQI----RGAH-PDEVTFKLLIGGLVQEKKLELACRLWDQ 465 (493)
Q Consensus 410 ~l~~~~~~~g~~~~a~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 465 (493)
.+..-|...|++++|.++|+.+.. .|.. +...+...+..++.+.|+.+....+.=+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344555556666666666665521 1211 1234444455555556666555554433
No 426
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=53.11 E-value=1.2e+02 Score=25.74 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043480 104 NMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIE 153 (493)
Q Consensus 104 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (493)
...++|...++.-.. ...++.+...+.-++...|+...+.++++.+..
T Consensus 113 ~~i~kA~~~L~~~~~--~~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~ 160 (246)
T PF07678_consen 113 NAINKALNYLERHLD--NIQDPYTLALVAYALALAGDSPQASKLLNKLNS 160 (246)
T ss_dssp HHHHHHHHHHHHHHG--CTSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcc--ccCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 333778888876643 233555555555566666777777777777754
No 427
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.92 E-value=2.9e+02 Score=28.78 Aligned_cols=116 Identities=10% Similarity=0.102 Sum_probs=62.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHHccCCh--HHHHHHHHHHHHCCCCCChhhHH--
Q 043480 197 IYNALISGFCRTGRIRRAMAIKSFMKWNGC--EP-DLVTYNAILNYYCDEVML--DEAEKLVMEMESCGIEPDVYSYN-- 269 (493)
Q Consensus 197 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 269 (493)
-|..|+..|...|+.++|++++.+.....- .+ -...+..++..+.+.+.. +-+.+.-+...+.........+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 477888899999999999999988876320 00 111222344444444333 33333333322221100011111
Q ss_pred ----------HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHH
Q 043480 270 ----------QLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCK 312 (493)
Q Consensus 270 ----------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (493)
..+-.|......+.+..+++.++......+....+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1122345566677777777777776666666667777766654
No 428
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=52.81 E-value=1.6e+02 Score=25.82 Aligned_cols=18 Identities=33% Similarity=0.767 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHcCCHHHH
Q 043480 302 SYNTVIEAFCKGGQTRRA 319 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a 319 (493)
.|..|+.+++..|+.+-.
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 467777777777776543
No 429
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=52.74 E-value=1.5e+02 Score=25.61 Aligned_cols=55 Identities=9% Similarity=0.076 Sum_probs=38.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhH-------HHHHHHHHhcCChhHHHHHHH
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDY-------NRFIGVLIRHSRFDLVQFYYQ 68 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~~~~ 68 (493)
.+++-..+.+++++|+..+.++...|...+..+. .-+...|...|++....+...
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~ 69 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTIT 69 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 4677788889999999999999988766554443 345567777777655544443
No 430
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.23 E-value=95 Score=23.04 Aligned_cols=45 Identities=9% Similarity=0.108 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 422 SEAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQEKKLELACRLWDQM 466 (493)
Q Consensus 422 ~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 466 (493)
+.+..+|+.|...|+-- -+..|......+...|++++|.++++..
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 37888888887766654 4777777888888888888888887653
No 431
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.96 E-value=3.3e+02 Score=29.17 Aligned_cols=87 Identities=18% Similarity=0.225 Sum_probs=50.4
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHhccCchhH------------HHH-HHHHHH
Q 043480 125 VVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN----KACAALVVGLCGDGKVDL------------AYE-LTVGAM 187 (493)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~------------a~~-~~~~~~ 187 (493)
..+++.+.......|.+.+|...+ .. .||. .+...++..++.+|.++. ... +++..-
T Consensus 1021 a~~~t~vFnhhldlgh~~qAy~ai---~~---npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaa 1094 (1480)
T KOG4521|consen 1021 ALISTTVFNHHLDLGHWFQAYKAI---LR---NPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAA 1094 (1480)
T ss_pred HHHHHHHHHhhhchhhHHHHHHHH---Hc---CCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHh
Confidence 345677777777778777776544 32 2443 345666666777776543 233 233333
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043480 188 KGKVEFGVLIYNALISGFCRTGRIRRAMAI 217 (493)
Q Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 217 (493)
..........|+.|-..+...+++.+|-.+
T Consensus 1095 Rs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1095 RSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred hcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 332233345566666666778888877654
No 432
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=51.95 E-value=85 Score=22.55 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=22.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 446 LIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAI 485 (493)
Q Consensus 446 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 485 (493)
+++-+.++...++|+++++.|.+.| ..+....+.|-.-+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4555666666677777777776665 34444444444333
No 433
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=51.87 E-value=1.1e+02 Score=32.57 Aligned_cols=133 Identities=11% Similarity=0.042 Sum_probs=76.3
Q ss_pred HHHHhcCChhHHHH------HHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Q 043480 52 GVLIRHSRFDLVQF------YYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDV 125 (493)
Q Consensus 52 ~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~ 125 (493)
......|.+.+|.+ ++......-.++....|..+...+-+.++.+.|...- .+|.-+-+++.....+-+.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~----~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQ----RKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhc----ccceeeechhccCCCHHHH
Confidence 34445566666666 5553333333556677888888888888886665332 2334444455444333445
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHC-----C--CCCCHHhHHHHHHHHhccCchhHHHHHHHHHHh
Q 043480 126 VTYTIVIDGLCKAKEFDKAVQAWEHMIEN-----G--IKPDNKACAALVVGLCGDGKVDLAYELTVGAMK 188 (493)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (493)
..|..+.......+....|...+.+.... | -+|...++..+-..+...++++.|.+..+.+..
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 56766766666677777777777665542 1 122333444444444455666666666666554
No 434
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=51.22 E-value=1.2e+02 Score=27.04 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=42.1
Q ss_pred HhHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043480 386 IGTAYGVFLDMVEQGITPDV----ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 386 ~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 451 (493)
.++...+++.+++. -|+. ..|.++++.....|.++..+.+|++++..|..|-...-..+++.+.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 35677777777764 4453 3466666666777777777777777777777776666555655544
No 435
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=50.83 E-value=1.6e+02 Score=25.32 Aligned_cols=25 Identities=20% Similarity=0.041 Sum_probs=14.1
Q ss_pred CHHhHHHHHHHHhccCchhHHHHHH
Q 043480 159 DNKACAALVVGLCGDGKVDLAYELT 183 (493)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~ 183 (493)
+......+...+.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4455566666666666666666544
No 436
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=50.15 E-value=1.1e+02 Score=23.33 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CCCHHhHHHHHHHHHccCC-HhHHHHHHHHHHhCCCCCCHhhHHHH
Q 043480 338 FTILIKAFLREGSSAMAEKLLNQMRGMNL-----SPDRILYTTIIDCLCKSRE-IGTAYGVFLDMVEQGITPDVISYNAL 411 (493)
Q Consensus 338 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l 411 (493)
.+.++......++......+++.+..... ..+...|..++.+.+.... --.+..+|+-+.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 46666666677777777777776632110 1233445555555544433 23345555555554555555556666
Q ss_pred HHHHHh
Q 043480 412 INGLCK 417 (493)
Q Consensus 412 ~~~~~~ 417 (493)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 655443
No 437
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=50.06 E-value=38 Score=31.15 Aligned_cols=60 Identities=12% Similarity=0.007 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhC-------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHhc
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQS-------NCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMH 71 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 71 (493)
...|++..+-.||+..|+++++.+.-. -++-...++..++-+|...++|.+|.+.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888889999999998865321 123345667778888889999999999988775
No 438
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.89 E-value=2.1e+02 Score=26.37 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=40.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHHH--HcCCHHHHHHHHHHHHHc
Q 043480 272 LKGLCNSNQLDKAYMFMVKKMEAKGLRDKV--SYNTVIEAFC--KGGQTRRAYKLFEGMRRR 329 (493)
Q Consensus 272 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 329 (493)
+......+++..|..++..+... ..++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556889999999999999886 333332 4455555554 367788999999988765
No 439
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=49.74 E-value=1.3e+02 Score=29.65 Aligned_cols=74 Identities=11% Similarity=0.161 Sum_probs=50.3
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHhccCCHH------HHHHHHHHHHHCC
Q 043480 84 RFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSK--GREPDVVTYTIVIDGLCKAKEFD------KAVQAWEHMIENG 155 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~ 155 (493)
+|+.+|...|++ ..+.++++.+... |.+.-...+|..++...++|.|+ .|.+.++...
T Consensus 33 sl~eacv~n~~~-----------~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~--- 98 (1117)
T COG5108 33 SLFEACVYNGDF-----------LRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR--- 98 (1117)
T ss_pred HHHHHHHhcchH-----------HHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---
Confidence 789999999999 5556666666543 33334567899999999999865 3444444443
Q ss_pred CCCCHHhHHHHHHHHh
Q 043480 156 IKPDNKACAALVVGLC 171 (493)
Q Consensus 156 ~~~~~~~~~~l~~~~~ 171 (493)
+.-|..||..++.+..
T Consensus 99 ln~d~~t~all~~~sl 114 (1117)
T COG5108 99 LNGDSLTYALLCQASL 114 (1117)
T ss_pred cCCcchHHHHHHHhhc
Confidence 4457778877766544
No 440
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=49.60 E-value=1.3e+02 Score=26.35 Aligned_cols=71 Identities=13% Similarity=0.234 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----------cCChhHH
Q 043480 355 EKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCK----------SSRVSEA 424 (493)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~a 424 (493)
.++|+.+.+.++.|.-..+..+.-.+.+.=.+.+...+|+.+... ..-|..|+..|+. .||+..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 356666666666777666666666666666677777777776642 2225555555542 4666666
Q ss_pred HHHHHH
Q 043480 425 MHLYEE 430 (493)
Q Consensus 425 ~~~~~~ 430 (493)
+++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 655554
No 441
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=49.45 E-value=84 Score=21.61 Aligned_cols=63 Identities=5% Similarity=-0.071 Sum_probs=40.3
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCc-ChhhHHHHHHHHhccCC
Q 043480 31 VFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSL-TPFTYSRFISGLCEVKN 94 (493)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~ 94 (493)
-++.....+ |.|...-..+...+...|++++|++.+-.+.+..... +...-..++..+...|.
T Consensus 10 al~~~~a~~-P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 10 ALEAALAAN-PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344444544 6778888889999999999999999999988764222 23344555555554444
No 442
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.27 E-value=1.5e+02 Score=24.11 Aligned_cols=90 Identities=10% Similarity=-0.079 Sum_probs=42.1
Q ss_pred HHHhccCchhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 043480 168 VGLCGDGKVDLAYELTVGAMKGKVEFG--VLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVM 245 (493)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 245 (493)
..+...|+++.|...++..+.....-+ ..+--.|.+.....|.+++|+.+++.....+. .......-.+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 445556666666666665554211000 11112334455555666666666655443211 11112223344555566
Q ss_pred hHHHHHHHHHHHHC
Q 043480 246 LDEAEKLVMEMESC 259 (493)
Q Consensus 246 ~~~a~~~~~~~~~~ 259 (493)
-++|..-|+.....
T Consensus 175 k~~Ar~ay~kAl~~ 188 (207)
T COG2976 175 KQEARAAYEKALES 188 (207)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666655554
No 443
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=48.22 E-value=1.7e+02 Score=24.76 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=12.9
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 043480 450 LVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~ 469 (493)
|-..|+.++|.++.+.+.+.
T Consensus 179 yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 179 YEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHTSS-HHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHH
Confidence 34578888887777766654
No 444
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=46.98 E-value=91 Score=21.29 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=18.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043480 417 KSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELA 459 (493)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 459 (493)
..|+.+.|.+++..+. .| +..|...+.++...|..+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 3455555666655555 32 12344555555555544433
No 445
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=46.98 E-value=64 Score=20.54 Aligned_cols=48 Identities=15% Similarity=0.014 Sum_probs=24.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043480 193 FGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYC 241 (493)
Q Consensus 193 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 241 (493)
|....++.++..+++-.-.++++..+.+....| .-+..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 344455555555555555666666666666555 234444444444433
No 446
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=46.08 E-value=2.2e+02 Score=25.54 Aligned_cols=64 Identities=13% Similarity=0.136 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 043480 350 SSAMAEKLLNQMRGMNLSPDR----ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGL 415 (493)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 415 (493)
..+++..++..+.+. -|+. ..|..++......|.++..+.+|++++..|-.|-...-..++..+
T Consensus 118 p~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 118 PKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 345777888888764 3554 467777888888888889999999999888887666555555544
No 447
>PHA02875 ankyrin repeat protein; Provisional
Probab=46.02 E-value=2.5e+02 Score=26.13 Aligned_cols=75 Identities=17% Similarity=0.101 Sum_probs=31.3
Q ss_pred hccCchhHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCCh
Q 043480 171 CGDGKVDLAYELTVGAMKGKVEFGVLI--YNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLV--TYNAILNYYCDEVML 246 (493)
Q Consensus 171 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~ 246 (493)
+..|+.+.+..++ +.|..++... ..+.+...+..|+.+-+ +.+.+.|..|+.. .....+...+..|+.
T Consensus 10 ~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 3445554443333 3444443322 22344455556665433 3333444333321 111223344455666
Q ss_pred HHHHHHH
Q 043480 247 DEAEKLV 253 (493)
Q Consensus 247 ~~a~~~~ 253 (493)
+.+..++
T Consensus 82 ~~v~~Ll 88 (413)
T PHA02875 82 KAVEELL 88 (413)
T ss_pred HHHHHHH
Confidence 5544444
No 448
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.01 E-value=1.3e+02 Score=25.63 Aligned_cols=58 Identities=9% Similarity=0.034 Sum_probs=33.6
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHh----CC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043480 374 TTIIDCLCKSREIGTAYGVFLDMVE----QG-ITPDVISYNALINGLCKSSRVSEAMHLYEEM 431 (493)
Q Consensus 374 ~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 431 (493)
..+...|...|++++|.++|+.+.. .| ..+...+...+..++...|+.+..+.+.=++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556666777777777777776642 12 1223344555566666677776666554433
No 449
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.88 E-value=3.6e+02 Score=27.83 Aligned_cols=310 Identities=10% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChh
Q 043480 17 SNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFT 96 (493)
Q Consensus 17 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 96 (493)
..|...|++++|+++-..-.+.- ..++..-...+.+.++|..|-++|.++ ...+..+.--+....+.+
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~l----e~Vl~~qAdf~f~~k~y~~AA~~yA~t--------~~~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDAL----ETVLLKQADFLFQDKEYLRAAEIYAET--------LSSFEEVALKFLEINQER 433 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHh--------hhhHHHHHHHHHhcCCHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC-CHHHHHHHHHH---------HHHCCCCCCHHhHHHH
Q 043480 97 LINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAK-EFDKAVQAWEH---------MIENGIKPDNKACAAL 166 (493)
Q Consensus 97 ~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~---------~~~~~~~~~~~~~~~l 166 (493)
.-..++.+-.+.-- -.++... .-...+..+..+.-+.... .-+++.+-++. +......-+.......
T Consensus 434 ~L~~~L~KKL~~lt-~~dk~q~--~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv 510 (911)
T KOG2034|consen 434 ALRTFLDKKLDRLT-PEDKTQR--DALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETV 510 (911)
T ss_pred HHHHHHHHHHhhCC-hHHHHHH--HHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHH
Q ss_pred HHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 043480 167 VVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVML 246 (493)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 246 (493)
...+...|+.+....+-.-+.+ |..++..+.+.+.+++|++++..-. ++..+-...-.+...
T Consensus 511 ~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~------~~el~yk~ap~Li~~--- 572 (911)
T KOG2034|consen 511 YQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQR------NPELFYKYAPELITH--- 572 (911)
T ss_pred HHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhcc------chhhHHHhhhHHHhc---
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc---CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 043480 247 DEAEKLVMEMESCGIEPDVYSYNQLLKGLCNS---NQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLF 323 (493)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 323 (493)
......+.....+-..+......++..+.+. .....+...++-........++..+|.++..|++..+-+.-..+-
T Consensus 573 -~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le 651 (911)
T KOG2034|consen 573 -SPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLE 651 (911)
T ss_pred -CcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHH
Q ss_pred HHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043480 324 EGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMR 362 (493)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 362 (493)
..+...+- ...-....++.|.+.+....+..++..+.
T Consensus 652 ~~~~~~~~--~~YDl~~alRlc~~~~~~ra~V~l~~~l~ 688 (911)
T KOG2034|consen 652 IIKFMKSR--VHYDLDYALRLCLKFKKTRACVFLLCMLN 688 (911)
T ss_pred HHhhcccc--ceecHHHHHHHHHHhCccceeeeHHHHHH
No 450
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.86 E-value=2.2e+02 Score=25.35 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 043480 338 FTILIKAFLREGSSAMAEKLLNQ 360 (493)
Q Consensus 338 ~~~l~~~~~~~~~~~~a~~~~~~ 360 (493)
+......|++.||.+.|.+.+..
T Consensus 107 ~~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHH
Confidence 33444455555555555555543
No 451
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=45.79 E-value=1.2e+02 Score=24.69 Aligned_cols=60 Identities=10% Similarity=0.055 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQM 70 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 70 (493)
..+.++..+.-.|+++.|-++|--++....-.-...|..-+..+.+.+.-....+.++.+
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHH
No 452
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.66 E-value=3e+02 Score=26.81 Aligned_cols=162 Identities=12% Similarity=0.019 Sum_probs=93.6
Q ss_pred cCChhHHHHHHHHhccCC--------CCcChhh---HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCC-
Q 043480 57 HSRFDLVQFYYQQMHPLG--------FSLTPFT---YSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPD- 124 (493)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~--------~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~- 124 (493)
+..|++|...|.-....- +..+++. ...+...+...|+.+.+..++ +.++-+|+......+.|.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLi----eR~Ly~~d~a~hp~F~~~s 326 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLI----ERGLYVFDRALHPNFIPFS 326 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHH----HHHHHHHHHHhcccccccc
Confidence 445677777777665532 1122333 444456678889998888777 567777777754323222
Q ss_pred ------------HhhHHH---HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh-ccCchhHHHHHHHHHHh
Q 043480 125 ------------VVTYTI---VIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLC-GDGKVDLAYELTVGAMK 188 (493)
Q Consensus 125 ------------~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 188 (493)
...|.+ -|..+.+.|-+..|+++.+-+.+....-|......+|..|+ +..++.--+++++....
T Consensus 327 g~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 327 GNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred ccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 122222 24456677888888888888877654445666666777664 55667766777666643
Q ss_pred CC---CCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 043480 189 GK---VEFGVLIYNALISGFCRTGR---IRRAMAIKSFMK 222 (493)
Q Consensus 189 ~~---~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~ 222 (493)
.+ .-|+...-..+...|..... -+.|...+.+..
T Consensus 407 ~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 407 MNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred hccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 22 23343333345555554443 344444444444
No 453
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.00 E-value=4.3e+02 Score=28.45 Aligned_cols=127 Identities=13% Similarity=0.071 Sum_probs=77.1
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHH
Q 043480 127 TYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN----KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALI 202 (493)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 202 (493)
-|..+++.+-+.+-.+.+.++-...++. ++++. .+++.+.+.....|.+-+|...+-..... ..-..+...++
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlv 1061 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHH
Confidence 4777888888889999998888777764 23332 34566777777888888887765443321 11233555667
Q ss_pred HHHHhcCCHH------------HHHH-HHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH-HHHH
Q 043480 203 SGFCRTGRIR------------RAMA-IKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKL-VMEM 256 (493)
Q Consensus 203 ~~~~~~~~~~------------~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~ 256 (493)
..+..+|.++ +... +++..-+.........|+.|-..+...+++.+|-.+ |+..
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEya 1129 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYA 1129 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 7777777654 3333 333333222222334566666667778888776654 4433
No 454
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.63 E-value=1.2e+02 Score=21.85 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=14.2
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHh
Q 043480 373 YTTIIDCLCKSREIGTAYGVFLDMVE 398 (493)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 398 (493)
|..++..|...|..++|.+++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555555555555555544
No 455
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=44.19 E-value=2.5e+02 Score=25.64 Aligned_cols=58 Identities=7% Similarity=0.069 Sum_probs=41.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh-ccCchhHHHHHHHHHHh
Q 043480 131 VIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLC-GDGKVDLAYELTVGAMK 188 (493)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 188 (493)
.|..+.+.|-+..|+++.+-+......-|......+|..|+ +.++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 35677889999999999999988765446666666666664 66777777777666543
No 456
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=43.87 E-value=2.8e+02 Score=25.97 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=17.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHh
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMT 36 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~ 36 (493)
.++.-++.+|.++.|.+++++-.
T Consensus 123 ~laadhvAAGsFetAm~LLnrQi 145 (422)
T PF06957_consen 123 SLAADHVAAGSFETAMQLLNRQI 145 (422)
T ss_dssp -SHHHHHHCT-HHHHHHHHHHHC
T ss_pred CcHHHHHHhCCHHHHHHHHHHHh
Confidence 45667888999999999998744
No 457
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=43.52 E-value=75 Score=22.95 Aligned_cols=47 Identities=9% Similarity=0.074 Sum_probs=30.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFD 61 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 61 (493)
++......+..-.|.++++.+.+.++..+..|-...+..+.+.|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 45555556666777777777777665566666666666676666543
No 458
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=43.23 E-value=81 Score=22.62 Aligned_cols=62 Identities=8% Similarity=0.005 Sum_probs=31.1
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCC
Q 043480 374 TTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSS--RVSEAMHLYEEMQIRGAH 437 (493)
Q Consensus 374 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~ 437 (493)
..++.-|...|+.++|...+.++.-. .-.......++..+...+ .-+....++..+.+.+.-
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 45566677778888888888775311 011223333444443332 223345556666655443
No 459
>PRK09857 putative transposase; Provisional
Probab=42.17 E-value=2.4e+02 Score=24.83 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=34.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043480 410 ALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLD 474 (493)
Q Consensus 410 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 474 (493)
.++.-....++.++-.++++.+.+. .........++..-+.+.|.-+++.++..+|+..|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333334445555555555555443 222333344555555555655667777777777776554
No 460
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=40.97 E-value=72 Score=23.31 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 043480 13 RAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRF 60 (493)
Q Consensus 13 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 60 (493)
..++......+..-.|.++++.+.+.++..+..|-..-+..+.+.|-.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 345666666666777777777777776666666666666666666654
No 461
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=40.49 E-value=2e+02 Score=23.33 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=35.7
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhC--------------CCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 043480 375 TIIDCLCKSREIGTAYGVFLDMVEQ--------------GITPDVISYNALINGLCKSSRVSEAMHLYEE 430 (493)
Q Consensus 375 ~l~~~~~~~~~~~~a~~~~~~~~~~--------------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (493)
.++..|-+..++.+...+++.+.+. +..+--...|.....+.++|..+.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 4455566666666666666666542 1233445566777778888888888888774
No 462
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=40.40 E-value=63 Score=17.55 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=11.2
Q ss_pred HHHHHHHHcCChhHHHHHHH
Q 043480 14 AQISNLVKAGLIDQAVHVFD 33 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~ 33 (493)
.++-.+-..|++++|+++|+
T Consensus 6 ~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 44555566666666666633
No 463
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=40.38 E-value=3.2e+02 Score=29.59 Aligned_cols=141 Identities=11% Similarity=0.047 Sum_probs=84.8
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHH-------HhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC----
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDE-------MTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL---- 73 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 73 (493)
++....-|..|...+-+.|+.++|+..-.. +...+.+.+.-.|..+........+...|...+.+.+..
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 455666788899999999999999886543 333343444455666666666677888888777776553
Q ss_pred -C--CCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 043480 74 -G--FSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWE 149 (493)
Q Consensus 74 -~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 149 (493)
| .+|...+++.+-..+...++.+.|.+.++.+.. .-+.......-....+++.+.+.+...+++..|+...+
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a----~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALA----KNKKVLGPKELETALSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH----HHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHh
Confidence 2 233334444444444455677666666644333 22222211122355677777777777777777665443
No 464
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=40.16 E-value=1.4e+02 Score=26.16 Aligned_cols=58 Identities=14% Similarity=0.256 Sum_probs=47.8
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043480 390 YGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQ 452 (493)
Q Consensus 390 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 452 (493)
.++|+.+.+.++.|....+.-+.-.+.+.=.+.+.+.+|+.+.. |+.-|..|+..|+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 56788888899999999998888888888899999999999875 44447777777764
No 465
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=40.11 E-value=92 Score=22.51 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=31.7
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChh
Q 043480 376 IIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVS 422 (493)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 422 (493)
++..+...+..-.|.++++.+.+.+..++..|.-..+..+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 45555555666678888888887766666666666667777777544
No 466
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=39.71 E-value=1.6e+02 Score=21.92 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHCCCCCC-HHhHHHHHHHHhccCchhHHHHHHHH
Q 043480 143 KAVQAWEHMIENGIKPD-NKACAALVVGLCGDGKVDLAYELTVG 185 (493)
Q Consensus 143 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 185 (493)
.+.++|..|...|+-.. +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777776655432 44555566666666777777766654
No 467
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=39.39 E-value=1.9e+02 Score=22.85 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=16.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcC
Q 043480 313 GGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREG 349 (493)
Q Consensus 313 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 349 (493)
.+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3334444555555554444444444333333443333
No 468
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.59 E-value=1.8e+02 Score=22.30 Aligned_cols=62 Identities=11% Similarity=0.174 Sum_probs=38.2
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHcc-CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChh
Q 043480 360 QMRGMNLSPDRILYTTIIDCLCKS-REIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVS 422 (493)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 422 (493)
.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-..
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 44556666555432 334444433 457788888888887766666666666666777776543
No 469
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.46 E-value=2e+02 Score=22.77 Aligned_cols=64 Identities=9% Similarity=-0.006 Sum_probs=42.9
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 043480 359 NQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSE 423 (493)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 423 (493)
+.+.+.|+..+..-. .++..+...++.-.|.++++.+.+.+..++..|.-.-+..+...|-..+
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 334556766665543 4444455556677899999999888777777776667777887775543
No 470
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=37.53 E-value=3.1e+02 Score=24.64 Aligned_cols=64 Identities=13% Similarity=0.209 Sum_probs=38.0
Q ss_pred HHHHHccCCHhHHHHHHHHHHhC---CCCCCHhhH--HHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCH
Q 043480 377 IDCLCKSREIGTAYGVFLDMVEQ---GITPDVISY--NALINGLCKSSRVSEAMHLYEEMQI-----RGAHPDE 440 (493)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~ 440 (493)
+...-+.++.++|.+.++++.+. --.|+...| ....+++...||..++.+++++..+ -+++|+.
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 33444556777777777777643 123454444 3444556667777777777777655 4555543
No 471
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=37.25 E-value=52 Score=21.68 Aligned_cols=17 Identities=6% Similarity=0.001 Sum_probs=11.1
Q ss_pred hcCChhHHHHHHHHhcc
Q 043480 56 RHSRFDLVQFYYQQMHP 72 (493)
Q Consensus 56 ~~~~~~~a~~~~~~~~~ 72 (493)
..|++++|+.+|...++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 45677777777766654
No 472
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=36.97 E-value=1.8e+02 Score=25.00 Aligned_cols=59 Identities=7% Similarity=-0.060 Sum_probs=45.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL 73 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (493)
.+=+.+.++++++.|....++....+ |.++..+.--..+|.+.|.+..|+.-++...+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~-P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLN-PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhC-CCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 34467788888888888888888875 667777777778888888888888877775553
No 473
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=36.94 E-value=1.8e+02 Score=21.86 Aligned_cols=26 Identities=15% Similarity=-0.010 Sum_probs=17.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCC
Q 043480 49 RFIGVLIRHSRFDLVQFYYQQMHPLG 74 (493)
Q Consensus 49 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (493)
.++--+...|+++.|+.+.+.+++.|
T Consensus 53 ~~mvW~~D~Gd~~~AL~~a~yAi~~~ 78 (132)
T PF05944_consen 53 TVMVWLFDVGDFDGALDIAEYAIEHG 78 (132)
T ss_pred hhHhhhhcccCHHHHHHHHHHHHHcC
Confidence 34444566777777777777777766
No 474
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=36.94 E-value=2.9e+02 Score=24.15 Aligned_cols=85 Identities=15% Similarity=0.062 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---------
Q 043480 388 TAYGVFLDMVEQGITPDVISYNALINGLCK----SSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEK--------- 454 (493)
Q Consensus 388 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------- 454 (493)
.|...+.++...+ +......+...|.. ..+..+|...|++..+.|. ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhc
Confidence 5666666666554 23333333333322 2356666666666666543 22222222 333333
Q ss_pred ------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 043480 455 ------KLELACRLWDQMMEKGFTLDKTVSA 479 (493)
Q Consensus 455 ------~~~~a~~~~~~~~~~~~~~~~~~~~ 479 (493)
+...|...+......+.........
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 6777777777777776665555555
No 475
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=35.83 E-value=93 Score=21.64 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=33.7
Q ss_pred HHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcCh
Q 043480 20 VKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTP 79 (493)
Q Consensus 20 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 79 (493)
.+..++.+|..+|..+.+.| ..+...+..+...+..-++.+-- ..+..-.+..+.|++
T Consensus 35 ~~~e~i~s~~~Lf~~Lee~g-ll~e~~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~~~~ 92 (97)
T cd08790 35 YERGLIRSGRDFLLALERQG-RCDETNFRQVLQLLRIITRHDLL-PYVTLKRRRAVCPDL 92 (97)
T ss_pred hhccCcCcHHHHHHHHHHcC-CCccchHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCch
Confidence 34467777888888887777 44444434555555555555544 444444444555554
No 476
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=35.77 E-value=1.5e+02 Score=24.38 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHhcC---------ChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 406 ISYNALINGLCKSS---------RVSEAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 406 ~~~~~l~~~~~~~g---------~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 467 (493)
.-|..+..+|.+.| +.+.-..+++..++.|++- =++.|..+|+--.-.-+.++..+++..+.
T Consensus 164 eE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 164 EEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred HHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 34555555555554 3455566666666766653 36677777776666667777777776653
No 477
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=35.59 E-value=88 Score=22.85 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=16.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043480 412 INGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQ 452 (493)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 452 (493)
+..+...+..-.|.++++.+.+.+...+..|..--++.+..
T Consensus 14 l~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 54 (120)
T PF01475_consen 14 LELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEE 54 (120)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHH
Confidence 33333334444455555555544444444433333333333
No 478
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=34.30 E-value=89 Score=21.19 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=29.8
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043480 403 PDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQE 453 (493)
Q Consensus 403 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 453 (493)
|.+.....++..+.. ++++++...+.++...|+.+ ......+...+...
T Consensus 3 p~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~-~~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 3 PPPEVIEEILESCLN-GDFKEARKKLYELLVEGYSA-SDILKQLHEVLVES 51 (89)
T ss_dssp --HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--H-HHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHh
Confidence 344455566665544 58899998888888777653 44555566666665
No 479
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=34.20 E-value=3.7e+02 Score=24.63 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=35.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 043480 272 LKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFC-KGGQTRRAYKLFEGMRR 328 (493)
Q Consensus 272 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 328 (493)
+..+.+.|-+..|+++.+-+..-.+..|+.....+|+.|+ +.++++-.+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3455667777777777766666666556666666666554 45566656666655443
No 480
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=33.93 E-value=1.5e+02 Score=20.15 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 426 HLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 426 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
++|+-....|+..|+.+|..+++.+.-.--.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666654
No 481
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.58 E-value=4.1e+02 Score=24.92 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=23.4
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043480 200 ALISGFCR---TGRIRRAMAIKSFMKWNGCEPDLVTYNAILNY 239 (493)
Q Consensus 200 ~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 239 (493)
.+++++.+ .++.+.|+.++..|...|..|....-..+..+
T Consensus 232 ~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 232 DLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34444443 46777788888888777755554444333333
No 482
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=33.05 E-value=2.2e+02 Score=21.61 Aligned_cols=71 Identities=8% Similarity=0.170 Sum_probs=40.8
Q ss_pred CcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 76 SLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREP-DVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 76 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
.++..+--.+.-++.+..+.+.. ++.+.+++++.+...+. .......|.-++.+.++++.++++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv--------~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDV--------QEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHH--------HHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34444444455555555544332 56677777777522221 2223333455677888888888888887765
No 483
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=32.71 E-value=1.9e+02 Score=20.80 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 043480 175 KVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVM 254 (493)
Q Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 254 (493)
..++|..+.+.+...+. ....+--.-+..+...|++++|+.. - .....||...|.++.. .+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~---~-~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLL---P-QCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHH---H-TTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHh---c-ccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 34455555544444321 1122222233344455555555111 1 1112455555444332 24555555555555
Q ss_pred HHHHC
Q 043480 255 EMESC 259 (493)
Q Consensus 255 ~~~~~ 259 (493)
++...
T Consensus 94 rla~~ 98 (116)
T PF09477_consen 94 RLASS 98 (116)
T ss_dssp HHCT-
T ss_pred HHHhC
Confidence 44443
No 484
>PRK09462 fur ferric uptake regulator; Provisional
Probab=32.52 E-value=2.3e+02 Score=21.72 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=34.3
Q ss_pred HHhCCCCCCHhhHHHHHHHHhcc-CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCch
Q 043480 116 MVSKGREPDVVTYTIVIDGLCKA-KEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKV 176 (493)
Q Consensus 116 ~~~~g~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (493)
+.+.|..++.. -..++..+... +..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 33445554332 33344444443 45677888888887776555666666666666555543
No 485
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=32.25 E-value=2e+02 Score=20.84 Aligned_cols=39 Identities=21% Similarity=0.095 Sum_probs=27.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 043480 50 FIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGL 89 (493)
Q Consensus 50 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 89 (493)
++..+.+....++|+++.+.|.+.| ..+...-+.|-..+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 5666777888888888888888887 66665555544443
No 486
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=31.65 E-value=4.4e+02 Score=24.76 Aligned_cols=373 Identities=10% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhh
Q 043480 48 NRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVT 127 (493)
Q Consensus 48 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 127 (493)
|-.+.-|...|+..+|-+..+++ ..+.+.....-+++...+.- ..|....-.+...+...+..+
T Consensus 218 n~~l~eyv~~getrea~rciR~L-----~vsffhhe~vkralv~ame~-----------~~ae~l~l~llke~~e~glis 281 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIREL-----GVSFFHHEGVKRALVDAMED-----------ALAEGLTLKLLKEGREEGLIS 281 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHh-----CCCchhhHHHHHHHHHHHhh-----------hhcccceeccchhhhhhcchh
Q ss_pred HHHHHHHHhccCC--------HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHH
Q 043480 128 YTIVIDGLCKAKE--------FDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYN 199 (493)
Q Consensus 128 ~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 199 (493)
-..+..++.+.+. ...|...|+......+.-+...-+.+-..-...|+.+....+-+.+..
T Consensus 282 sSq~~kGfsr~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~----------- 350 (645)
T KOG0403|consen 282 SSQMGKGFSRKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTP----------- 350 (645)
T ss_pred hhccccCchhhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHH-----------
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 043480 200 ALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSN 279 (493)
Q Consensus 200 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 279 (493)
+|+-|...|+..+..+.++.+-.-...|-...+..-+..=.+...-+.|-.++..+.-. +-++...-+.....+-...
T Consensus 351 -IIqEYFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e-~fsteDv~~~F~mLLesae 428 (645)
T KOG0403|consen 351 -IIQEYFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGE-VFSTEDVEKGFDMLLESAE 428 (645)
T ss_pred -HHHHHHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcc-cCCHHHHHHHHHHHHhcch
Q ss_pred ----CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCcCHhHH------------
Q 043480 280 ----QLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMR-----RRGIELDVVTF------------ 338 (493)
Q Consensus 280 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~------------ 338 (493)
+...|-+.+...+......+...-..+=....+......+.+.++... +.+-+.-...|
T Consensus 429 dtALD~p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~ 508 (645)
T KOG0403|consen 429 DTALDIPRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDA 508 (645)
T ss_pred hhhccccccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHH
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 043480 339 ----TILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALING 414 (493)
Q Consensus 339 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 414 (493)
..|+.-|...|+..+|...+.++- ..+-.....+.+++.+.-+.|+-...+.+++..-.. ...|-+.+-.+
T Consensus 509 kdkI~~LLeEY~~~GdisEA~~CikeLg-mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkG 583 (645)
T KOG0403|consen 509 KDKIDMLLEEYELSGDISEACHCIKELG-MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKG 583 (645)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhC-CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhh
Q ss_pred HHhcC--------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043480 415 LCKSS--------RVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKK 455 (493)
Q Consensus 415 ~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 455 (493)
|.+.. +...|.+.|+...+.+.. +...|..|-..|-.-++
T Consensus 584 f~RV~dsl~DlsLDvPna~ekf~~~Ve~~~~-~G~i~~~l~~~~~s~l~ 631 (645)
T KOG0403|consen 584 FERVYDSLPDLSLDVPNAYEKFERYVEECFQ-NGIISKQLRDLCPSRLR 631 (645)
T ss_pred hhhhhccCcccccCCCcHHHHHHHHHHHHHH-cCchhHHhhhcchhhhc
No 487
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=31.44 E-value=1.3e+02 Score=22.68 Aligned_cols=36 Identities=14% Similarity=0.400 Sum_probs=21.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 450 LVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAI 485 (493)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 485 (493)
+.+.|-..+...++++|.+.|+..+..+++..++..
T Consensus 119 ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 119 AKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred HHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 344455555666666666666666666666655543
No 488
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.76 E-value=1.7e+02 Score=19.58 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=12.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 043480 447 IGGLVQEKKLELACRLWDQMMEKG 470 (493)
Q Consensus 447 ~~~~~~~g~~~~a~~~~~~~~~~~ 470 (493)
++-+.++.-.++|+++++.|.+.|
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344444555555555555555543
No 489
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=30.66 E-value=6.8e+02 Score=26.62 Aligned_cols=263 Identities=11% Similarity=0.008 Sum_probs=138.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 043480 192 EFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQL 271 (493)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 271 (493)
.++..+-...+..+.+.+..+ +...+..+.. .++...-...+.++...+........+..+.+. +++.+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 445556666666666666533 4444444442 334444444444444332211122233333332 455555555
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCH
Q 043480 272 LKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSS 351 (493)
Q Consensus 272 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 351 (493)
+.++...+..+ . ..+...+. .+|...-...+.++.+.+..+. +..... .++...-.....++...+..
T Consensus 705 ~~aL~~~~~~~-~-~~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-A-ALFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-H-HHHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccc
Confidence 55554433111 1 12222222 2455555555666655544322 122221 33555555666666666654
Q ss_pred HH-HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 043480 352 AM-AEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEE 430 (493)
Q Consensus 352 ~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (493)
+. +...+..+.+ .++...-...+.++...|....+...+..+++. ++..+=...+.++...+. +++...+..
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 32 3344444443 466777778888888888766554555555543 355555566777777765 445566666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043480 431 MQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIH 486 (493)
Q Consensus 431 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 486 (493)
+.+ .|+..+-...+.++.+.+....+...+..+++ .+|..+-..-..++.
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~---D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT---DSDADVRAYARRALA 895 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHh
Confidence 554 46777777778888776434567777777765 456666555555543
No 490
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=30.51 E-value=2.3e+02 Score=21.11 Aligned_cols=51 Identities=10% Similarity=0.084 Sum_probs=28.6
Q ss_pred ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChh
Q 043480 24 LIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPF 80 (493)
Q Consensus 24 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (493)
++.-|.+++.+....+ .+...++.+....-.-.+.++..++......|..+
T Consensus 4 Np~IA~~~l~~l~~s~------~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~ef 54 (126)
T PF10155_consen 4 NPNIAIEILVKLINSP------NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEF 54 (126)
T ss_pred cHHHHHHHHHHHcCCc------hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHH
Confidence 4455555555544321 25555666666666666777777776665344443
No 491
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=30.42 E-value=1.8e+02 Score=25.56 Aligned_cols=65 Identities=9% Similarity=0.070 Sum_probs=29.7
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHH-HHHHHHccCCHhHHHHHHHHHHhC
Q 043480 334 DVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTT-IIDCLCKSREIGTAYGVFLDMVEQ 399 (493)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~ 399 (493)
|+..|...+....+.|.+.+.-.++.+..+.. |.++..|-. .-.-+...++++.+..+|.+.+..
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 44444444443344455555555555555433 334444422 222233445555555555555443
No 492
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=30.16 E-value=2.3e+02 Score=20.94 Aligned_cols=90 Identities=9% Similarity=0.088 Sum_probs=49.0
Q ss_pred hcCChhHHHHHHHHhccC--CCCc---------ChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 043480 56 RHSRFDLVQFYYQQMHPL--GFSL---------TPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPD 124 (493)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~--~~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~ 124 (493)
..|-+++|..-++...+. .+++ |..++..|-.++...|+++++..-. +.|+..|.+--+. +.|
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA----~~aL~YFNRRGEL--~qd 94 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSA----DRALRYFNRRGEL--HQD 94 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHH----HHHHHHHHHH--T--TST
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHH----HHHHHHHhhcccc--ccc
Confidence 345666655555444331 2222 3467777888889999998877433 4556666655332 222
Q ss_pred -HhhHHHHH----HHHhccCCHHHHHHHHHHH
Q 043480 125 -VVTYTIVI----DGLCKAKEFDKAVQAWEHM 151 (493)
Q Consensus 125 -~~~~~~l~----~~~~~~~~~~~a~~~~~~~ 151 (493)
-..|-..+ .++-..|+.++|+..|+..
T Consensus 95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 22343332 3455678999998888653
No 493
>PRK13342 recombination factor protein RarA; Reviewed
Probab=29.67 E-value=4.8e+02 Score=24.48 Aligned_cols=82 Identities=17% Similarity=0.174 Sum_probs=46.4
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCC-----HHHHHHHHHHHHhCCCCCCHHhHHH
Q 043480 304 NTVIEAFCK---GGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGS-----SAMAEKLLNQMRGMNLSPDRILYTT 375 (493)
Q Consensus 304 ~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~ 375 (493)
..+++++.+ ..+++.|+.++..|.+.|..|....-..+..++-..|. ..-|...++.....|++.-......
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~~l~~ 310 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALAQ 310 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 334444444 47888899999999988877775555555555444332 2344555666666775444333333
Q ss_pred HHHHHHccCC
Q 043480 376 IIDCLCKSRE 385 (493)
Q Consensus 376 l~~~~~~~~~ 385 (493)
.+-.++.+-.
T Consensus 311 ~~~~l~~~pk 320 (413)
T PRK13342 311 AVIYLALAPK 320 (413)
T ss_pred HHHHHHcCCC
Confidence 3333343333
No 494
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=29.30 E-value=4.2e+02 Score=23.80 Aligned_cols=95 Identities=15% Similarity=0.082 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC-HhhHHHH
Q 043480 336 VTFTILIKAFLREGSSAMAEKLLNQMRGMNL---SPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD-VISYNAL 411 (493)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l 411 (493)
..|.-=.+-|.+.+++..|...|..-++... ..+.+.|+.=..+-...|++..|+.--...+.. .|+ ...|..=
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRG 159 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhhh
Confidence 3455556667777778888887776665321 223455655555555667777777766666654 343 2333333
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 043480 412 INGLCKSSRVSEAMHLYEEMQ 432 (493)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~~~ 432 (493)
..++....++++|.+..++..
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhh
Confidence 445556666677766666653
No 495
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=29.13 E-value=1.3e+02 Score=19.74 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=28.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043480 416 CKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKK 455 (493)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 455 (493)
...|+.+.+.+++++..+.|..|.......+..+..+.|+
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4467888888888888877777766666666666665553
No 496
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=28.43 E-value=6.5e+02 Score=25.65 Aligned_cols=86 Identities=9% Similarity=0.072 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHH-hCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCC-CC------------CHhhHHHHHHHH
Q 043480 350 SSAMAEKLLNQMR-GMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGI-TP------------DVISYNALINGL 415 (493)
Q Consensus 350 ~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p------------~~~~~~~l~~~~ 415 (493)
..++....+..+. +.|+..+......++... .|+...+..+++++...|- .. +......++.++
T Consensus 179 s~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 179 TAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH
Confidence 3455555555544 467777777777777654 6999999999988775321 11 112233344433
Q ss_pred HhcCChhHHHHHHHHHHHcCCCC
Q 043480 416 CKSSRVSEAMHLYEEMQIRGAHP 438 (493)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~p 438 (493)
. .++...++.+++++...|..+
T Consensus 257 ~-~~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 257 I-NQDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred H-cCCHHHHHHHHHHHHHhCCCH
Confidence 3 477788888888887776654
No 497
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.84 E-value=5.5e+02 Score=24.66 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=16.6
Q ss_pred cCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043480 329 RGIELDVVTFTILIKAFLREGSSAMAEKLLNQMR 362 (493)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 362 (493)
.|+..+......++.. ..|+...+...++.+.
T Consensus 192 egi~i~~eal~~Ia~~--s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 192 EGIEIDREALSFIAKR--ASGGLRDALTMLEQVW 223 (472)
T ss_pred cCCCCCHHHHHHHHHH--hCCCHHHHHHHHHHHH
Confidence 3444455555444442 2466666666665543
No 498
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.72 E-value=2.2e+02 Score=20.04 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=8.7
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 043480 412 INGLCKSSRVSEAMHLYEE 430 (493)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~ 430 (493)
.-.|...|+.+.|.+-|+.
T Consensus 79 GlLys~~G~~e~a~~eFet 97 (121)
T COG4259 79 GLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHhhcCChHHHHHHHHH
Confidence 3334444554444444443
No 499
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=27.58 E-value=2.3e+02 Score=20.14 Aligned_cols=29 Identities=3% Similarity=-0.002 Sum_probs=14.0
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 53 VLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
.+..+|+|++|..+.+.. ..||...|..|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~AL 76 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLAL 76 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHH
Confidence 344555555555555443 14554444443
No 500
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=27.39 E-value=2.4e+02 Score=20.22 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=36.2
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC--ChhHHHHHHHHHHHcCC
Q 043480 373 YTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSS--RVSEAMHLYEEMQIRGA 436 (493)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~ 436 (493)
...++.-|...+++++|...+.++.... -.......++..+...+ .-+....++..+.+.+.
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 3456677788889999988887765321 12233444555555443 23345556666665544
Done!