Query 043480
Match_columns 493
No_of_seqs 628 out of 2902
Neff 12.1
Searched_HMMs 29240
Date Mon Mar 25 09:03:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 7.4E-42 2.5E-46 331.8 46.2 454 7-485 82-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5.2E-40 1.8E-44 318.8 39.3 446 19-492 63-567 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 5.1E-30 1.7E-34 234.6 46.0 383 15-455 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 9.8E-30 3.4E-34 232.7 47.0 354 125-489 33-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.3E-31 7.8E-36 246.7 25.1 187 302-488 28-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.8E-30 6.1E-35 240.7 25.3 215 213-453 8-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 2.2E-26 7.4E-31 219.0 39.4 441 8-469 5-478 (514)
8 3fp2_A TPR repeat-containing p 100.0 4.4E-25 1.5E-29 211.2 37.5 431 8-469 24-491 (537)
9 2y4t_A DNAJ homolog subfamily 100.0 8.7E-25 3E-29 204.2 38.2 308 2-329 19-358 (450)
10 2y4t_A DNAJ homolog subfamily 100.0 3.6E-24 1.2E-28 200.0 40.0 372 111-493 13-443 (450)
11 2gw1_A Mitochondrial precursor 99.9 5.2E-24 1.8E-28 202.6 36.3 409 7-434 37-478 (514)
12 3fp2_A TPR repeat-containing p 99.9 2.6E-22 8.8E-27 192.0 38.7 451 2-489 52-535 (537)
13 2ooe_A Cleavage stimulation fa 99.9 1.9E-20 6.4E-25 178.1 45.3 430 2-469 6-492 (530)
14 3ieg_A DNAJ homolog subfamily 99.9 6.8E-21 2.3E-25 172.1 38.3 330 8-380 2-350 (359)
15 3ieg_A DNAJ homolog subfamily 99.9 1.3E-20 4.5E-25 170.2 39.6 335 124-491 2-356 (359)
16 2ooe_A Cleavage stimulation fa 99.9 3.7E-19 1.3E-23 169.2 43.5 418 32-491 2-479 (530)
17 3hym_B Cell division cycle pro 99.9 1.5E-20 5.3E-25 167.7 30.1 289 4-345 17-314 (330)
18 2xm6_A Protein corresponding t 99.9 8.1E-18 2.8E-22 158.3 48.8 397 26-468 24-466 (490)
19 2xm6_A Protein corresponding t 99.9 7.9E-18 2.7E-22 158.4 48.2 355 6-401 36-434 (490)
20 3hym_B Cell division cycle pro 99.9 8.9E-20 3E-24 162.7 32.6 285 194-485 21-314 (330)
21 1fch_A Peroxisomal targeting s 99.9 7.6E-20 2.6E-24 165.9 26.7 267 196-467 65-357 (368)
22 1fch_A Peroxisomal targeting s 99.9 3.1E-19 1.1E-23 161.9 26.1 312 21-360 13-355 (368)
23 4eqf_A PEX5-related protein; a 99.8 1.3E-19 4.5E-24 164.0 21.8 269 194-466 64-353 (365)
24 4eqf_A PEX5-related protein; a 99.8 2.3E-19 8E-24 162.4 22.9 235 8-258 64-309 (365)
25 4g1t_A Interferon-induced prot 99.8 4.1E-17 1.4E-21 153.2 36.2 401 41-478 48-469 (472)
26 3cv0_A Peroxisome targeting si 99.8 2E-18 6.8E-23 153.7 25.4 234 7-257 19-267 (327)
27 1b89_A Protein (clathrin heavy 99.8 2.1E-18 7.1E-23 152.5 24.6 283 21-357 15-304 (449)
28 4g1t_A Interferon-induced prot 99.8 7.6E-17 2.6E-21 151.3 36.2 381 76-493 48-448 (472)
29 3cv0_A Peroxisome targeting si 99.8 3.5E-18 1.2E-22 152.1 25.7 266 197-468 23-314 (327)
30 1xi4_A Clathrin heavy chain; a 99.8 3.9E-15 1.3E-19 147.2 48.2 403 7-464 983-1440(1630)
31 1b89_A Protein (clathrin heavy 99.8 1.3E-17 4.4E-22 147.4 25.1 333 7-395 30-368 (449)
32 1xi4_A Clathrin heavy chain; a 99.8 3E-15 1E-19 148.0 43.5 377 44-491 985-1371(1630)
33 3mkr_A Coatomer subunit epsilo 99.8 3.4E-17 1.2E-21 142.0 26.1 253 17-294 7-264 (291)
34 3mkr_A Coatomer subunit epsilo 99.8 3.2E-17 1.1E-21 142.1 26.0 249 172-434 11-264 (291)
35 2pl2_A Hypothetical conserved 99.8 4.2E-17 1.4E-21 135.2 19.3 201 5-222 1-212 (217)
36 4e6h_A MRNA 3'-END-processing 99.7 4.8E-14 1.6E-18 134.7 39.8 145 2-154 59-223 (679)
37 3e4b_A ALGK; tetratricopeptide 99.7 1.2E-15 4.2E-20 141.1 27.6 347 14-400 8-388 (452)
38 3spa_A Mtrpol, DNA-directed RN 99.7 5.9E-18 2E-22 161.8 12.0 138 332-474 124-265 (1134)
39 3uq3_A Heat shock protein STI1 99.7 1.9E-15 6.4E-20 129.4 26.4 225 231-469 6-236 (258)
40 3spa_A Mtrpol, DNA-directed RN 99.7 5.5E-18 1.9E-22 162.0 10.1 151 299-454 126-286 (1134)
41 2pl2_A Hypothetical conserved 99.7 9.7E-16 3.3E-20 127.0 21.8 199 263-467 3-212 (217)
42 4e6h_A MRNA 3'-END-processing 99.7 2.9E-13 1E-17 129.3 41.5 443 24-485 47-584 (679)
43 3e4b_A ALGK; tetratricopeptide 99.7 3.2E-15 1.1E-19 138.4 25.5 379 49-469 8-421 (452)
44 2h6f_A Protein farnesyltransfe 99.7 2.1E-15 7.1E-20 135.1 22.7 252 3-273 91-361 (382)
45 3uq3_A Heat shock protein STI1 99.7 4.4E-15 1.5E-19 127.1 24.0 225 196-434 6-236 (258)
46 1ouv_A Conserved hypothetical 99.7 6.2E-14 2.1E-18 121.0 29.9 227 5-260 2-252 (273)
47 2vq2_A PILW, putative fimbrial 99.7 7.6E-15 2.6E-19 122.7 23.2 208 3-224 2-211 (225)
48 2ho1_A Type 4 fimbrial biogene 99.7 9.3E-15 3.2E-19 124.6 23.7 201 9-224 37-238 (252)
49 3u4t_A TPR repeat-containing p 99.7 1.4E-14 4.8E-19 125.0 25.0 229 237-469 10-250 (272)
50 3u4t_A TPR repeat-containing p 99.7 5.1E-15 1.7E-19 127.8 21.9 234 8-258 2-249 (272)
51 1ouv_A Conserved hypothetical 99.7 3.5E-13 1.2E-17 116.2 31.5 221 232-470 8-252 (273)
52 2q7f_A YRRB protein; TPR, prot 99.7 3.6E-15 1.2E-19 126.3 18.0 202 7-224 21-222 (243)
53 2ho1_A Type 4 fimbrial biogene 99.7 1E-13 3.5E-18 118.1 26.1 199 267-469 39-238 (252)
54 2vq2_A PILW, putative fimbrial 99.7 1.1E-13 3.7E-18 115.6 25.4 212 265-481 8-221 (225)
55 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.1E-14 3.9E-19 125.8 19.7 245 209-463 19-269 (275)
56 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.7E-15 2.3E-19 127.3 17.5 249 19-288 15-269 (275)
57 2h6f_A Protein farnesyltransfe 99.6 1.8E-13 6E-18 122.6 26.4 227 233-466 100-344 (382)
58 2q7f_A YRRB protein; TPR, prot 99.6 4.5E-14 1.6E-18 119.5 21.3 192 237-433 30-221 (243)
59 3sf4_A G-protein-signaling mod 99.6 1.2E-14 4E-19 133.5 18.4 246 5-257 5-294 (406)
60 4a1s_A PINS, partner of inscut 99.6 1.2E-14 4.2E-19 133.7 17.5 244 7-257 46-330 (411)
61 3sf4_A G-protein-signaling mod 99.6 5.8E-14 2E-18 128.8 20.0 121 159-280 8-142 (406)
62 3vtx_A MAMA; tetratricopeptide 99.6 1.2E-13 4E-18 111.4 19.0 169 6-189 2-170 (184)
63 3ro2_A PINS homolog, G-protein 99.6 4E-14 1.4E-18 126.2 16.8 207 8-222 4-250 (338)
64 4a1s_A PINS, partner of inscut 99.6 4.7E-14 1.6E-18 129.7 17.4 203 267-469 128-372 (411)
65 2ond_A Cleavage stimulation fa 99.6 1.6E-12 5.3E-17 114.2 26.0 237 6-258 5-269 (308)
66 2ond_A Cleavage stimulation fa 99.6 4.9E-12 1.7E-16 110.9 28.1 183 282-468 81-269 (308)
67 3nf1_A KLC 1, kinesin light ch 99.6 3.5E-14 1.2E-18 125.1 13.4 181 4-188 22-223 (311)
68 3ro2_A PINS homolog, G-protein 99.6 1.3E-13 4.5E-18 122.9 17.3 266 203-469 13-332 (338)
69 3vtx_A MAMA; tetratricopeptide 99.6 2.1E-12 7E-17 104.0 22.3 167 299-469 4-170 (184)
70 3ulq_A Response regulator aspa 99.5 1.3E-12 4.6E-17 118.6 23.1 230 237-469 110-368 (383)
71 3ulq_A Response regulator aspa 99.5 3.2E-12 1.1E-16 116.2 24.7 294 135-433 22-367 (383)
72 4abn_A Tetratricopeptide repea 99.5 1E-12 3.5E-17 122.4 20.1 214 246-466 84-318 (474)
73 4abn_A Tetratricopeptide repea 99.5 6E-13 2.1E-17 123.9 18.4 212 25-254 84-316 (474)
74 3nf1_A KLC 1, kinesin light ch 99.5 2.2E-13 7.7E-18 119.9 13.1 179 41-223 24-223 (311)
75 4gyw_A UDP-N-acetylglucosamine 99.5 3.5E-12 1.2E-16 123.5 19.3 170 4-188 4-173 (723)
76 1hz4_A MALT regulatory protein 99.4 7.7E-11 2.6E-15 106.6 26.4 276 10-292 15-320 (373)
77 3as5_A MAMA; tetratricopeptide 99.4 1.1E-11 3.7E-16 99.9 18.1 166 8-188 7-172 (186)
78 1hz4_A MALT regulatory protein 99.4 2.2E-10 7.5E-15 103.6 28.1 297 165-469 19-349 (373)
79 3q15_A PSP28, response regulat 99.4 1E-10 3.6E-15 105.9 25.5 163 302-468 184-364 (378)
80 4i17_A Hypothetical protein; T 99.4 2.3E-11 8E-16 101.6 19.1 208 5-236 3-220 (228)
81 3q15_A PSP28, response regulat 99.4 8.9E-11 3E-15 106.3 23.8 309 121-433 6-364 (378)
82 3as5_A MAMA; tetratricopeptide 99.4 4.9E-11 1.7E-15 95.9 19.8 164 302-469 10-173 (186)
83 4i17_A Hypothetical protein; T 99.4 1.3E-10 4.3E-15 97.1 21.9 207 263-483 5-221 (228)
84 4gyw_A UDP-N-acetylglucosamine 99.4 4.1E-11 1.4E-15 116.1 20.3 164 301-468 10-173 (723)
85 2uy1_A Cleavage stimulation fa 99.3 6E-09 2E-13 96.9 32.5 382 21-468 6-412 (493)
86 3edt_B KLC 2, kinesin light ch 99.3 2.1E-11 7.3E-16 105.5 14.9 234 20-258 12-280 (283)
87 3edt_B KLC 2, kinesin light ch 99.3 1.6E-11 5.4E-16 106.3 13.6 236 89-329 11-281 (283)
88 2uy1_A Cleavage stimulation fa 99.2 3.5E-08 1.2E-12 91.8 32.0 362 56-483 6-392 (493)
89 3qky_A Outer membrane assembly 99.2 3.6E-10 1.2E-14 96.5 17.4 172 5-189 11-224 (261)
90 3mv2_B Coatomer subunit epsilo 99.2 8.5E-09 2.9E-13 87.5 24.5 179 284-469 85-282 (310)
91 2fo7_A Synthetic consensus TPR 99.2 5.8E-10 2E-14 84.2 15.5 131 10-154 2-132 (136)
92 2r5s_A Uncharacterized protein 99.2 3.1E-10 1.1E-14 90.3 13.7 165 9-188 6-172 (176)
93 1qqe_A Vesicular transport pro 99.2 1.7E-09 5.7E-14 93.9 19.1 164 302-467 79-267 (292)
94 3urz_A Uncharacterized protein 99.2 6.4E-10 2.2E-14 91.1 15.4 86 8-95 3-104 (208)
95 1qqe_A Vesicular transport pro 99.2 9.3E-10 3.2E-14 95.5 17.1 205 11-222 39-267 (292)
96 2pzi_A Probable serine/threoni 99.2 3.6E-10 1.2E-14 110.1 15.8 171 20-207 402-580 (681)
97 3mv2_B Coatomer subunit epsilo 99.2 1.4E-08 4.6E-13 86.3 23.3 210 133-362 21-238 (310)
98 3urz_A Uncharacterized protein 99.2 2.5E-09 8.6E-14 87.5 18.0 138 341-484 60-199 (208)
99 2fo7_A Synthetic consensus TPR 99.2 3.9E-09 1.3E-13 79.6 17.3 129 338-469 4-132 (136)
100 3qou_A Protein YBBN; thioredox 99.1 1.3E-09 4.4E-14 94.2 16.1 167 6-187 114-282 (287)
101 3qky_A Outer membrane assembly 99.1 2.9E-09 1E-13 90.8 17.9 100 229-329 14-126 (261)
102 2yhc_A BAMD, UPF0169 lipoprote 99.1 5.8E-09 2E-13 86.6 18.1 188 7-225 2-214 (225)
103 3dra_A Protein farnesyltransfe 99.1 4.3E-08 1.5E-12 84.2 23.4 227 15-257 38-285 (306)
104 4ga2_A E3 SUMO-protein ligase 99.1 4E-10 1.4E-14 86.8 8.9 145 15-174 3-148 (150)
105 3rjv_A Putative SEL1 repeat pr 99.1 4.1E-08 1.4E-12 80.5 20.8 177 284-472 5-200 (212)
106 2pzi_A Probable serine/threoni 99.1 1E-08 3.4E-13 100.0 19.7 173 276-455 402-583 (681)
107 4ga2_A E3 SUMO-protein ligase 99.1 1.3E-09 4.4E-14 83.9 10.7 139 312-454 9-148 (150)
108 2yhc_A BAMD, UPF0169 lipoprote 99.0 3.6E-08 1.2E-12 81.8 19.8 187 264-469 3-213 (225)
109 3rjv_A Putative SEL1 repeat pr 99.0 6.3E-08 2.1E-12 79.4 20.8 141 108-258 4-157 (212)
110 3dra_A Protein farnesyltransfe 99.0 7.5E-07 2.6E-11 76.5 28.0 216 248-468 51-286 (306)
111 2r5s_A Uncharacterized protein 99.0 5.6E-09 1.9E-13 82.9 13.5 159 306-468 12-172 (176)
112 2vsy_A XCC0866; transferase, g 99.0 7.1E-09 2.4E-13 99.3 16.4 154 22-190 2-158 (568)
113 3qou_A Protein YBBN; thioredox 99.0 1.5E-08 5.2E-13 87.5 16.7 165 300-468 117-283 (287)
114 3gyz_A Chaperone protein IPGC; 99.0 5.6E-09 1.9E-13 79.8 12.3 105 2-119 29-133 (151)
115 2vsy_A XCC0866; transferase, g 99.0 2E-08 6.9E-13 96.1 18.4 155 278-436 2-159 (568)
116 4gco_A Protein STI-1; structur 99.0 8.8E-09 3E-13 76.3 12.5 114 5-132 9-122 (126)
117 2ifu_A Gamma-SNAP; membrane fu 98.9 3.8E-08 1.3E-12 86.0 17.0 130 302-432 78-222 (307)
118 2ifu_A Gamma-SNAP; membrane fu 98.9 9.3E-09 3.2E-13 89.9 12.1 193 22-222 4-222 (307)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.9 9.4E-08 3.2E-12 78.5 17.3 130 9-155 6-151 (213)
120 2c2l_A CHIP, carboxy terminus 98.9 5E-08 1.7E-12 83.9 15.9 198 6-224 1-199 (281)
121 3u3w_A Transcriptional activat 98.9 5.1E-07 1.8E-11 78.2 22.3 164 306-469 81-266 (293)
122 1a17_A Serine/threonine protei 98.9 5.3E-08 1.8E-12 76.3 13.9 131 8-152 12-144 (166)
123 3q7a_A Farnesyltransferase alp 98.9 9.4E-07 3.2E-11 76.7 22.4 182 12-209 57-256 (349)
124 2vyi_A SGTA protein; chaperone 98.9 3.3E-08 1.1E-12 73.8 12.0 123 4-140 7-129 (131)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2E-07 6.7E-12 76.6 17.1 127 302-434 8-150 (213)
126 1na0_A Designed protein CTPR3; 98.8 9.1E-08 3.1E-12 70.7 13.4 116 8-137 8-123 (125)
127 2lni_A Stress-induced-phosphop 98.8 6.3E-08 2.2E-12 72.6 12.6 89 5-95 12-100 (133)
128 1a17_A Serine/threonine protei 98.8 2.7E-07 9.2E-12 72.2 16.0 130 336-468 14-145 (166)
129 2qfc_A PLCR protein; TPR, HTH, 98.8 1.4E-06 4.7E-11 75.5 21.9 168 302-469 77-266 (293)
130 4gco_A Protein STI-1; structur 98.8 2.2E-07 7.5E-12 68.7 14.4 97 371-469 14-110 (126)
131 2vgx_A Chaperone SYCD; alterna 98.8 6.2E-08 2.1E-12 74.1 11.5 99 369-469 20-118 (148)
132 2qfc_A PLCR protein; TPR, HTH, 98.8 2.1E-07 7E-12 80.8 16.2 171 9-187 75-264 (293)
133 2xcb_A PCRH, regulatory protei 98.8 5.2E-08 1.8E-12 74.1 10.6 93 3-97 12-104 (142)
134 3u3w_A Transcriptional activat 98.8 5.2E-06 1.8E-10 71.8 24.7 162 272-433 82-265 (293)
135 2vgx_A Chaperone SYCD; alterna 98.8 6.7E-08 2.3E-12 73.9 11.1 105 2-119 14-118 (148)
136 3gyz_A Chaperone protein IPGC; 98.8 5.8E-08 2E-12 74.1 10.2 101 41-154 33-133 (151)
137 1p5q_A FKBP52, FK506-binding p 98.8 8E-08 2.7E-12 84.9 12.6 124 7-144 145-283 (336)
138 3q7a_A Farnesyltransferase alp 98.7 1.3E-05 4.3E-10 69.7 25.6 229 209-469 68-331 (349)
139 4f3v_A ESX-1 secretion system 98.7 1.4E-07 4.8E-12 79.0 12.8 191 16-224 14-237 (282)
140 3upv_A Heat shock protein STI1 98.7 1.6E-07 5.5E-12 69.7 11.9 95 6-102 1-95 (126)
141 1na0_A Designed protein CTPR3; 98.7 5.5E-07 1.9E-11 66.4 14.8 95 372-468 11-105 (125)
142 3gw4_A Uncharacterized protein 98.7 1.5E-07 5.2E-12 76.5 12.7 157 312-469 4-176 (203)
143 2lni_A Stress-induced-phosphop 98.7 4.1E-07 1.4E-11 68.1 14.0 95 372-468 18-112 (133)
144 2vyi_A SGTA protein; chaperone 98.7 3.3E-07 1.1E-11 68.3 13.2 115 372-489 14-128 (131)
145 2e2e_A Formate-dependent nitri 98.7 3.6E-07 1.2E-11 72.5 14.0 118 313-433 23-143 (177)
146 4f3v_A ESX-1 secretion system 98.7 1.1E-06 3.6E-11 73.7 17.2 196 277-480 18-246 (282)
147 2c2l_A CHIP, carboxy terminus 98.7 1.8E-07 6.2E-12 80.4 12.8 96 266-363 5-100 (281)
148 3upv_A Heat shock protein STI1 98.7 8.8E-07 3E-11 65.6 14.3 97 371-469 5-101 (126)
149 1elw_A TPR1-domain of HOP; HOP 98.7 8.8E-07 3E-11 64.5 13.8 112 8-133 3-114 (118)
150 3dss_A Geranylgeranyl transfer 98.7 2.5E-05 8.5E-10 67.5 24.6 133 20-167 40-186 (331)
151 2kck_A TPR repeat; tetratricop 98.7 2.5E-07 8.5E-12 66.8 10.6 101 6-119 3-106 (112)
152 1p5q_A FKBP52, FK506-binding p 98.7 6.8E-07 2.3E-11 79.0 15.2 96 370-467 196-292 (336)
153 2e2e_A Formate-dependent nitri 98.6 2.3E-07 7.7E-12 73.7 10.9 123 19-155 20-145 (177)
154 4gcn_A Protein STI-1; structur 98.6 2.1E-07 7.1E-12 69.0 9.8 110 6-129 5-120 (127)
155 3gw4_A Uncharacterized protein 98.6 4.1E-07 1.4E-11 73.9 12.5 161 19-187 2-174 (203)
156 3sz7_A HSC70 cochaperone (SGT) 98.6 5.4E-07 1.9E-11 70.4 12.3 104 3-119 5-108 (164)
157 4gcn_A Protein STI-1; structur 98.6 1.1E-06 3.9E-11 65.0 13.3 107 372-481 10-122 (127)
158 2xcb_A PCRH, regulatory protei 98.6 4.5E-07 1.6E-11 68.8 11.3 96 372-469 20-115 (142)
159 3sz7_A HSC70 cochaperone (SGT) 98.6 2.2E-06 7.5E-11 66.9 15.1 97 335-433 11-107 (164)
160 3q49_B STIP1 homology and U bo 98.6 2.3E-06 8E-11 64.3 14.8 100 368-469 7-106 (137)
161 1elr_A TPR2A-domain of HOP; HO 98.6 1.1E-06 3.7E-11 65.4 12.5 116 371-489 5-126 (131)
162 1elr_A TPR2A-domain of HOP; HO 98.6 2.9E-07 9.9E-12 68.6 9.3 88 7-95 2-95 (131)
163 3q49_B STIP1 homology and U bo 98.6 1.8E-06 6.1E-11 64.9 13.8 97 4-102 4-100 (137)
164 2dba_A Smooth muscle cell asso 98.6 1.6E-06 5.5E-11 66.1 13.4 117 4-134 23-142 (148)
165 2fbn_A 70 kDa peptidylprolyl i 98.6 1.3E-07 4.3E-12 76.7 7.3 131 336-469 39-186 (198)
166 2fbn_A 70 kDa peptidylprolyl i 98.5 6.7E-07 2.3E-11 72.4 11.4 158 15-187 10-184 (198)
167 1elw_A TPR1-domain of HOP; HOP 98.5 4.3E-06 1.5E-10 60.7 14.8 95 372-468 6-100 (118)
168 1hxi_A PEX5, peroxisome target 98.5 6.5E-07 2.2E-11 65.6 9.9 96 10-118 18-113 (121)
169 3dss_A Geranylgeranyl transfer 98.5 0.00023 7.8E-09 61.6 26.1 235 207-469 41-304 (331)
170 2dba_A Smooth muscle cell asso 98.5 9.5E-06 3.3E-10 61.7 16.0 99 368-469 26-128 (148)
171 4b4t_Q 26S proteasome regulato 98.4 8.6E-06 2.9E-10 75.0 17.5 169 12-187 7-202 (434)
172 2kck_A TPR repeat; tetratricop 98.4 4E-06 1.4E-10 60.2 12.0 95 372-468 8-105 (112)
173 2xev_A YBGF; tetratricopeptide 98.4 5.2E-06 1.8E-10 61.5 12.9 96 11-119 4-105 (129)
174 3ro3_A PINS homolog, G-protein 98.4 1.5E-06 5.1E-11 67.5 9.3 139 8-153 8-157 (164)
175 1wao_1 Serine/threonine protei 98.4 1.7E-07 5.8E-12 87.0 4.0 128 8-149 5-134 (477)
176 1hxi_A PEX5, peroxisome target 98.4 4.2E-06 1.4E-10 61.2 10.6 94 373-468 20-113 (121)
177 4b4t_Q 26S proteasome regulato 98.3 4.4E-05 1.5E-09 70.2 19.4 24 237-260 11-34 (434)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 3E-06 1E-10 78.3 11.2 88 80-180 318-405 (457)
179 3k9i_A BH0479 protein; putativ 98.3 1.5E-06 5.1E-11 63.3 7.4 86 383-469 3-90 (117)
180 2xev_A YBGF; tetratricopeptide 98.3 2.2E-05 7.4E-10 58.1 13.8 92 376-469 8-105 (129)
181 3n71_A Histone lysine methyltr 98.3 2.4E-06 8.1E-11 78.8 9.7 134 17-154 317-464 (490)
182 3rkv_A Putative peptidylprolyl 98.3 1.2E-05 4.2E-10 62.4 12.4 63 406-469 64-126 (162)
183 1ihg_A Cyclophilin 40; ppiase 98.3 6.9E-06 2.4E-10 73.3 11.7 85 10-95 224-323 (370)
184 3rkv_A Putative peptidylprolyl 98.2 9.1E-06 3.1E-10 63.1 10.6 100 8-119 10-126 (162)
185 3ro3_A PINS homolog, G-protein 98.2 9.1E-06 3.1E-10 62.9 10.6 133 337-469 11-158 (164)
186 2hr2_A Hypothetical protein; a 98.2 5.5E-05 1.9E-09 57.1 13.9 108 374-483 15-150 (159)
187 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.5E-05 5.3E-10 73.6 13.3 87 371-460 318-405 (457)
188 3k9i_A BH0479 protein; putativ 98.2 2.3E-06 7.8E-11 62.3 6.1 75 21-96 2-78 (117)
189 1na3_A Designed protein CTPR2; 98.2 1.1E-05 3.8E-10 55.3 9.1 84 6-91 6-89 (91)
190 3ma5_A Tetratricopeptide repea 98.2 4.4E-06 1.5E-10 58.7 7.0 69 4-73 2-70 (100)
191 1ihg_A Cyclophilin 40; ppiase 98.2 2.5E-05 8.4E-10 69.8 13.4 91 369-461 272-362 (370)
192 1wao_1 Serine/threonine protei 98.2 5.3E-06 1.8E-10 77.0 9.2 119 309-430 15-135 (477)
193 1klx_A Cysteine rich protein B 98.1 0.00011 3.7E-09 55.0 14.1 112 349-471 9-128 (138)
194 2l6j_A TPR repeat-containing p 98.1 1.2E-05 4E-10 57.7 8.2 86 7-95 2-94 (111)
195 2if4_A ATFKBP42; FKBP-like, al 98.1 3.4E-06 1.2E-10 74.5 5.9 149 8-189 178-328 (338)
196 2hr2_A Hypothetical protein; a 98.1 3.2E-05 1.1E-09 58.3 10.0 93 9-102 11-125 (159)
197 1dce_A Protein (RAB geranylger 98.1 0.00018 6.3E-09 68.0 17.5 130 26-170 46-188 (567)
198 1dce_A Protein (RAB geranylger 98.0 0.0005 1.7E-08 65.1 20.0 170 281-455 45-241 (567)
199 3n71_A Histone lysine methyltr 98.0 2E-05 6.8E-10 72.7 10.0 131 53-187 318-462 (490)
200 2kat_A Uncharacterized protein 98.0 8.2E-05 2.8E-09 53.7 10.3 78 389-468 4-81 (115)
201 2if4_A ATFKBP42; FKBP-like, al 97.9 3.6E-05 1.2E-09 67.9 9.2 149 126-295 180-329 (338)
202 1klx_A Cysteine rich protein B 97.9 0.00075 2.6E-08 50.4 14.3 110 140-260 10-127 (138)
203 3ma5_A Tetratricopeptide repea 97.9 0.00012 4.2E-09 51.1 9.3 63 405-468 7-69 (100)
204 2kat_A Uncharacterized protein 97.9 5.3E-05 1.8E-09 54.7 7.7 67 5-72 15-81 (115)
205 1zu2_A Mitochondrial import re 97.8 3.6E-05 1.2E-09 57.9 6.3 106 20-133 13-132 (158)
206 1zu2_A Mitochondrial import re 97.8 8E-05 2.8E-09 56.0 7.7 38 347-385 14-51 (158)
207 2l6j_A TPR repeat-containing p 97.8 0.00042 1.4E-08 49.3 11.5 88 369-459 3-97 (111)
208 3bee_A Putative YFRE protein; 97.8 0.0003 1E-08 48.1 9.6 69 5-74 2-73 (93)
209 1na3_A Designed protein CTPR2; 97.7 0.00035 1.2E-08 47.6 10.1 60 373-433 12-71 (91)
210 3lvg_A Clathrin heavy chain 1; 97.5 1.3E-05 4.4E-10 70.9 0.3 245 7-284 52-323 (624)
211 3ly7_A Transcriptional activat 97.5 0.0032 1.1E-07 54.8 13.9 72 402-477 274-345 (372)
212 3ly7_A Transcriptional activat 97.4 0.0027 9.1E-08 55.2 13.3 150 40-199 190-347 (372)
213 2kc7_A BFR218_protein; tetratr 97.4 0.00099 3.4E-08 46.2 8.3 60 14-74 5-65 (99)
214 3qwp_A SET and MYND domain-con 97.4 0.00065 2.2E-08 61.6 9.0 102 14-119 292-407 (429)
215 3qww_A SET and MYND domain-con 97.3 0.00042 1.4E-08 62.8 7.6 94 56-153 310-410 (433)
216 3qwp_A SET and MYND domain-con 97.3 0.00095 3.3E-08 60.6 9.2 99 51-153 294-399 (429)
217 3bee_A Putative YFRE protein; 97.2 0.0073 2.5E-07 41.1 11.2 67 402-469 3-72 (93)
218 3qww_A SET and MYND domain-con 97.2 0.00075 2.6E-08 61.1 7.6 94 21-118 310-417 (433)
219 1pc2_A Mitochondria fission pr 97.2 0.0039 1.3E-07 46.4 9.8 91 387-481 15-110 (152)
220 3u64_A Protein TP_0956; tetrat 97.1 0.021 7.2E-07 47.5 14.2 91 107-199 180-281 (301)
221 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0041 1.4E-07 43.5 8.3 69 6-74 2-76 (104)
222 1wy6_A Hypothetical protein ST 96.9 0.062 2.1E-06 38.5 13.8 140 311-472 18-157 (172)
223 4ady_A RPN2, 26S proteasome re 96.8 0.46 1.6E-05 47.0 34.3 272 170-451 384-672 (963)
224 3mkq_A Coatomer beta'-subunit; 96.8 0.085 2.9E-06 52.7 18.9 27 335-361 681-707 (814)
225 1wy6_A Hypothetical protein ST 96.8 0.085 2.9E-06 37.8 14.3 58 342-400 98-155 (172)
226 2kc7_A BFR218_protein; tetratr 96.7 0.022 7.4E-07 39.1 10.1 58 376-434 6-64 (99)
227 1pc2_A Mitochondria fission pr 96.6 0.032 1.1E-06 41.5 10.5 81 352-434 15-100 (152)
228 2v5f_A Prolyl 4-hydroxylase su 96.5 0.041 1.4E-06 38.3 10.3 62 372-433 7-74 (104)
229 3u64_A Protein TP_0956; tetrat 96.5 0.031 1.1E-06 46.6 10.7 94 386-481 179-283 (301)
230 4h7y_A Dual specificity protei 96.5 0.045 1.6E-06 40.1 10.2 116 367-485 10-138 (161)
231 4h7y_A Dual specificity protei 96.4 0.1 3.5E-06 38.3 11.8 51 314-365 74-124 (161)
232 3lvg_A Clathrin heavy chain 1; 96.3 0.0003 1E-08 62.5 -1.9 187 7-208 81-276 (624)
233 1nzn_A CGI-135 protein, fissio 96.1 0.049 1.7E-06 38.9 9.0 82 386-469 17-103 (126)
234 3mkq_B Coatomer subunit alpha; 96.1 0.23 8E-06 37.9 13.1 98 136-254 16-113 (177)
235 3mkq_A Coatomer beta'-subunit; 96.0 0.29 1E-05 48.8 17.7 98 136-257 610-708 (814)
236 3mkq_B Coatomer subunit alpha; 95.5 0.61 2.1E-05 35.7 16.5 99 311-430 16-114 (177)
237 1nzn_A CGI-135 protein, fissio 95.0 0.12 4.2E-06 36.8 7.5 93 14-119 6-103 (126)
238 4fhn_B Nucleoporin NUP120; pro 94.3 2.9 9.8E-05 43.5 18.8 85 126-212 900-988 (1139)
239 2ff4_A Probable regulatory pro 94.1 0.53 1.8E-05 42.0 11.5 56 375-431 176-231 (388)
240 2ff4_A Probable regulatory pro 94.0 0.15 5.2E-06 45.5 7.7 69 12-81 174-247 (388)
241 3o48_A Mitochondria fission 1 93.3 1.4 4.6E-05 31.7 10.0 77 402-480 37-116 (134)
242 4gns_B Protein CSD3, chitin bi 92.8 0.37 1.3E-05 46.7 8.7 128 13-152 252-398 (754)
243 1v54_E Cytochrome C oxidase po 92.0 1.9 6.6E-05 29.0 9.1 46 388-433 28-73 (109)
244 4b4t_P 26S proteasome regulato 91.8 7.4 0.00025 35.4 19.2 256 208-466 29-321 (445)
245 1v54_E Cytochrome C oxidase po 91.6 2.2 7.4E-05 28.8 9.6 65 420-485 25-89 (109)
246 4b4t_P 26S proteasome regulato 91.5 7.9 0.00027 35.2 18.7 244 243-487 29-305 (445)
247 3ffl_A Anaphase-promoting comp 91.4 1.2 4.2E-05 33.4 8.1 56 47-102 23-86 (167)
248 4gns_B Protein CSD3, chitin bi 91.2 1.6 5.5E-05 42.4 11.0 49 439-489 612-660 (754)
249 1y8m_A FIS1; mitochondria, unk 91.1 3.4 0.00012 30.1 13.2 74 402-477 36-112 (144)
250 3ffl_A Anaphase-promoting comp 90.7 0.9 3.1E-05 34.1 6.9 89 11-99 22-142 (167)
251 2y69_E Cytochrome C oxidase su 90.1 3.9 0.00013 29.3 9.1 59 388-447 71-129 (152)
252 2y69_E Cytochrome C oxidase su 89.7 4.3 0.00015 29.1 9.2 65 420-485 68-132 (152)
253 3o48_A Mitochondria fission 1 88.6 3.9 0.00013 29.4 8.5 68 6-73 37-107 (134)
254 1zbp_A Hypothetical protein VP 87.5 2.2 7.5E-05 35.1 7.6 54 379-433 6-59 (273)
255 4fhn_B Nucleoporin NUP120; pro 87.5 18 0.00061 37.7 16.2 148 304-458 816-989 (1139)
256 1y8m_A FIS1; mitochondria, unk 86.8 7.4 0.00025 28.4 11.5 67 367-433 36-105 (144)
257 4ady_A RPN2, 26S proteasome re 85.9 31 0.001 34.6 34.0 269 135-416 384-672 (963)
258 2wpv_A GET4, UPF0363 protein Y 85.2 17 0.00057 31.0 17.8 93 52-148 61-157 (312)
259 4b4t_R RPN7, 26S proteasome re 85.0 7.4 0.00025 35.2 10.6 62 11-72 133-196 (429)
260 3lpz_A GET4 (YOR164C homolog); 84.9 18 0.00061 31.1 21.2 173 12-222 38-214 (336)
261 4b4t_R RPN7, 26S proteasome re 84.8 8.4 0.00029 34.8 10.9 98 336-433 132-236 (429)
262 1zbp_A Hypothetical protein VP 83.6 2.1 7E-05 35.3 5.6 57 16-73 4-60 (273)
263 1qsa_A Protein (soluble lytic 82.2 35 0.0012 32.5 30.9 116 139-258 228-347 (618)
264 3esl_A Checkpoint serine/threo 80.3 19 0.00065 28.1 10.9 56 383-438 92-148 (202)
265 3lpz_A GET4 (YOR164C homolog); 77.8 33 0.0011 29.5 21.4 167 268-468 38-215 (336)
266 1qsa_A Protein (soluble lytic 75.3 58 0.002 31.0 37.3 310 18-363 15-347 (618)
267 2wpv_A GET4, UPF0363 protein Y 75.1 38 0.0013 28.8 19.9 115 47-183 36-157 (312)
268 3esl_A Checkpoint serine/threo 72.9 32 0.0011 26.9 9.7 56 348-403 92-148 (202)
269 1wdy_A 2-5A-dependent ribonucl 71.3 28 0.00097 28.7 9.8 23 242-264 191-213 (285)
270 2nsz_A Programmed cell death p 70.5 27 0.00091 25.0 8.1 66 372-438 9-76 (129)
271 2uwj_G Type III export protein 70.3 22 0.00075 23.9 8.1 79 174-260 20-98 (115)
272 2p58_C Putative type III secre 68.9 24 0.00081 23.8 8.9 79 174-260 21-99 (116)
273 4b4t_S RPN3, 26S proteasome re 68.8 42 0.0014 30.9 10.3 63 8-73 230-299 (523)
274 2ion_A PDCD4, programmed cell 64.3 24 0.00083 26.2 6.7 66 372-438 11-78 (152)
275 1wdy_A 2-5A-dependent ribonucl 63.9 45 0.0015 27.4 9.5 186 14-229 7-213 (285)
276 2nsz_A Programmed cell death p 62.2 40 0.0014 24.1 8.0 62 12-74 10-73 (129)
277 3eu9_A Huntingtin-interacting 61.5 58 0.002 25.8 9.5 49 18-70 15-65 (240)
278 3eiq_C Programmed cell death p 61.1 83 0.0028 27.4 11.5 66 198-264 220-287 (358)
279 4a1g_A Mitotic checkpoint seri 61.0 48 0.0016 24.5 9.3 50 389-438 84-134 (152)
280 2ion_A PDCD4, programmed cell 60.5 31 0.0011 25.6 6.7 62 12-74 12-75 (152)
281 3bu8_A Telomeric repeat-bindin 59.2 40 0.0014 26.5 7.0 67 25-94 88-162 (235)
282 4gq2_M Nucleoporin NUP120; bet 58.4 1.1E+02 0.0036 31.2 12.2 28 127-154 899-926 (950)
283 4aez_C MAD3, mitotic spindle c 58.1 39 0.0013 26.9 7.1 52 387-438 131-183 (223)
284 3ltm_A Alpha-REP4; protein eng 58.0 65 0.0022 25.1 18.8 109 368-488 93-201 (211)
285 3txn_A 26S proteasome regulato 57.4 1E+02 0.0035 27.3 22.7 28 195-222 19-46 (394)
286 3eiq_C Programmed cell death p 56.4 1E+02 0.0035 26.9 11.9 79 408-487 220-300 (358)
287 3ltj_A Alpharep-4; protein eng 55.6 69 0.0024 24.7 19.3 139 334-488 58-196 (201)
288 2ijq_A Hypothetical protein; s 55.3 50 0.0017 24.7 6.9 54 19-72 42-103 (161)
289 3kea_A K1L; tropism, ANK repea 54.5 69 0.0024 26.6 8.9 205 51-293 35-246 (285)
290 4a1g_A Mitotic checkpoint seri 54.3 63 0.0022 23.9 11.3 60 422-481 82-142 (152)
291 2f6m_A Suppressor protein STP2 51.5 21 0.00073 21.7 3.6 46 11-57 4-49 (65)
292 2wvi_A Mitotic checkpoint seri 49.2 82 0.0028 23.7 11.2 50 389-438 79-129 (164)
293 2wvi_A Mitotic checkpoint seri 48.9 83 0.0028 23.7 9.3 51 354-404 79-130 (164)
294 4ets_A Ferric uptake regulatio 48.4 53 0.0018 24.6 6.4 45 305-349 37-83 (162)
295 2d2s_A Exocyst complex compone 47.6 1.1E+02 0.0038 24.7 9.2 91 340-433 23-119 (235)
296 3jxi_A Vanilloid receptor-rela 46.8 22 0.00076 29.0 4.6 55 16-70 9-72 (260)
297 4aez_C MAD3, mitotic spindle c 46.5 90 0.0031 24.9 7.5 51 353-403 132-183 (223)
298 3kae_A CDC27, possible protein 45.7 96 0.0033 23.5 7.2 53 18-70 71-140 (242)
299 3hra_A Ankyrin repeat family p 45.0 61 0.0021 24.9 6.8 15 425-439 158-172 (201)
300 2xig_A Ferric uptake regulatio 44.2 93 0.0032 22.9 7.4 15 420-434 41-55 (150)
301 2zu6_B Programmed cell death p 44.0 1.5E+02 0.0051 25.2 11.8 78 408-486 169-248 (307)
302 1k1a_A B-cell lymphoma 3-encod 43.3 1.1E+02 0.0037 24.2 8.3 15 55-69 17-31 (241)
303 3bqo_A Telomeric repeat-bindin 42.6 25 0.00086 27.2 3.6 49 25-73 94-146 (211)
304 3kea_A K1L; tropism, ANK repea 42.1 1.4E+02 0.0047 24.8 8.8 15 322-336 210-224 (285)
305 3eyy_A Putative iron uptake re 41.9 84 0.0029 22.9 6.5 34 386-419 33-66 (145)
306 2r9g_A AAA ATPase, central reg 41.7 1.2E+02 0.0042 23.6 10.0 62 312-374 26-92 (204)
307 2fe3_A Peroxide operon regulat 41.5 1E+02 0.0034 22.5 8.0 35 418-452 34-68 (145)
308 3bge_A Predicted ATPase; struc 41.4 1.2E+02 0.0042 23.5 8.7 54 313-366 20-78 (201)
309 3eu9_A Huntingtin-interacting 40.9 81 0.0028 24.9 7.1 22 446-467 213-234 (240)
310 2w57_A Ferric uptake regulatio 40.8 1.1E+02 0.0036 22.6 7.0 59 361-420 8-67 (150)
311 1mzb_A Ferric uptake regulatio 40.5 1E+02 0.0034 22.2 7.2 60 361-421 9-69 (136)
312 3qil_A Clathrin heavy chain 1; 40.4 5.3 0.00018 27.9 -0.2 52 197-251 34-85 (125)
313 3ygs_P Procaspase 9; apoptosis 39.1 49 0.0017 22.1 4.4 62 31-100 26-89 (97)
314 3txn_A 26S proteasome regulato 37.5 2.2E+02 0.0075 25.2 29.2 296 126-435 20-344 (394)
315 2xig_A Ferric uptake regulatio 37.4 1.2E+02 0.0041 22.2 7.8 42 306-347 32-73 (150)
316 2fe3_A Peroxide operon regulat 37.3 1.2E+02 0.004 22.1 6.9 34 351-384 37-70 (145)
317 3ctd_A Putative ATPase, AAA fa 35.9 1.6E+02 0.0054 23.2 9.0 67 306-372 38-112 (213)
318 2uwj_G Type III export protein 35.7 1E+02 0.0035 20.9 8.0 11 348-358 81-91 (115)
319 2b7e_A PRE-mRNA processing pro 35.5 41 0.0014 20.0 3.0 29 26-54 3-31 (59)
320 3eyy_A Putative iron uptake re 35.2 1.2E+02 0.0041 22.1 6.5 12 353-364 35-46 (145)
321 2o03_A Probable zinc uptake re 35.2 71 0.0024 22.8 5.1 47 14-60 15-61 (131)
322 2fu4_A Ferric uptake regulatio 34.8 87 0.003 19.8 6.9 34 421-454 33-66 (83)
323 2p58_C Putative type III secre 34.5 1.1E+02 0.0037 20.8 9.0 9 313-321 53-61 (116)
324 2w57_A Ferric uptake regulatio 34.2 1.4E+02 0.0047 21.9 6.7 60 116-176 8-68 (150)
325 4g8k_A 2-5A-dependent ribonucl 33.3 2.2E+02 0.0076 24.1 10.2 16 54-69 32-47 (337)
326 1mzb_A Ferric uptake regulatio 33.2 1.3E+02 0.0046 21.5 6.6 60 116-176 9-69 (136)
327 3bqo_A Telomeric repeat-bindin 32.6 96 0.0033 24.1 5.4 28 12-39 120-147 (211)
328 4gq2_M Nucleoporin NUP120; bet 32.3 1.9E+02 0.0065 29.4 9.3 87 14-106 815-924 (950)
329 3kae_A CDC27, possible protein 32.1 1.7E+02 0.0057 22.3 8.3 22 379-400 71-92 (242)
330 1oyz_A Hypothetical protein YI 31.9 2.1E+02 0.0072 23.4 21.0 47 43-93 36-82 (280)
331 1bd8_A P19INK4D CDK4/6 inhibit 31.9 1E+02 0.0035 22.2 5.9 17 18-34 8-24 (156)
332 4ets_A Ferric uptake regulatio 31.9 75 0.0026 23.8 4.9 70 25-95 13-85 (162)
333 2yru_A Steroid receptor RNA ac 31.4 1.3E+02 0.0046 21.0 6.9 48 107-154 43-90 (118)
334 3mwm_A ZUR, putative metal upt 31.1 66 0.0023 23.3 4.4 45 15-59 19-63 (139)
335 3ltm_A Alpha-REP4; protein eng 30.0 1.9E+02 0.0065 22.3 18.5 8 51-58 40-47 (211)
336 2keb_A DNA polymerase subunit 29.9 1.3E+02 0.0043 20.2 7.1 58 423-482 27-89 (101)
337 3mwm_A ZUR, putative metal upt 29.3 82 0.0028 22.8 4.6 48 129-176 17-64 (139)
338 2crb_A Nuclear receptor bindin 29.0 71 0.0024 21.1 3.5 23 12-34 18-40 (97)
339 2o03_A Probable zinc uptake re 28.8 1.1E+02 0.0037 21.8 5.2 45 376-420 16-60 (131)
340 1bpo_A Protein (clathrin); cla 28.7 3.4E+02 0.011 24.7 10.3 141 23-187 343-483 (494)
341 3ltj_A Alpharep-4; protein eng 28.4 2E+02 0.0067 21.9 18.4 49 193-245 88-136 (201)
342 1n11_A Ankyrin; clathrin, BAND 28.2 3.1E+02 0.011 24.2 11.3 13 346-358 286-298 (437)
343 3pvs_A Replication-associated 27.8 3.4E+02 0.012 24.5 14.0 55 312-366 267-326 (447)
344 3bu8_A Telomeric repeat-bindin 27.3 1.2E+02 0.004 24.0 5.1 27 13-39 118-144 (235)
345 2ijq_A Hypothetical protein; s 27.3 2E+02 0.0067 21.5 8.0 53 417-469 44-104 (161)
346 2pnn_A Transient receptor pote 27.2 1.3E+02 0.0046 24.5 6.3 55 16-70 17-80 (273)
347 2d2s_A Exocyst complex compone 26.6 2.5E+02 0.0086 22.6 11.6 114 14-132 23-142 (235)
348 3ljn_A Hypothetical protein; a 26.3 3.1E+02 0.011 23.5 9.9 45 112-156 68-112 (364)
349 3mv2_A Coatomer subunit alpha; 25.9 3.1E+02 0.011 23.4 11.3 49 387-435 187-237 (325)
350 2r9g_A AAA ATPase, central reg 25.8 2.4E+02 0.0081 22.0 8.6 56 381-437 25-85 (204)
351 1k1a_A B-cell lymphoma 3-encod 25.7 2.4E+02 0.0082 22.1 9.8 24 202-225 13-36 (241)
352 1ya0_A SMG-7 transcript varian 25.7 3.9E+02 0.013 24.5 9.5 74 15-90 158-231 (497)
353 2qx5_A Nucleoporin NIC96; mRNA 25.5 4.6E+02 0.016 25.2 23.7 80 201-291 300-382 (661)
354 4b4t_S RPN3, 26S proteasome re 25.2 4.1E+02 0.014 24.6 11.3 64 301-364 232-299 (523)
355 3re2_A Predicted protein; meni 25.1 3.4E+02 0.012 23.6 8.3 27 44-70 296-322 (472)
356 1bd8_A P19INK4D CDK4/6 inhibit 24.8 1.6E+02 0.0054 21.1 5.8 19 51-69 6-24 (156)
357 2p1h_A APAF-1, apoptotic prote 23.8 1.6E+02 0.0054 19.3 5.0 63 28-98 24-86 (94)
358 2keb_A DNA polymerase subunit 23.7 1.7E+02 0.0058 19.6 6.2 32 143-174 27-58 (101)
359 2cwy_A Hypothetical protein TT 23.6 1.1E+02 0.0037 20.4 3.9 52 19-72 11-67 (94)
360 1oyz_A Hypothetical protein YI 23.3 3E+02 0.01 22.4 22.5 137 333-485 140-277 (280)
361 3jxi_A Vanilloid receptor-rela 23.2 2.5E+02 0.0084 22.5 7.2 55 133-187 10-73 (260)
362 2zu6_B Programmed cell death p 23.1 3.4E+02 0.012 22.9 11.6 24 199-222 170-193 (307)
363 1n11_A Ankyrin; clathrin, BAND 22.7 4E+02 0.014 23.5 12.7 202 16-253 18-232 (437)
364 3pvs_A Replication-associated 22.5 4.3E+02 0.015 23.8 12.0 47 315-363 166-220 (447)
365 3aji_A 26S proteasome non-ATPa 22.4 2.8E+02 0.0094 21.6 8.4 187 271-474 9-199 (231)
366 4b4t_O 26S proteasome regulato 22.1 3.8E+02 0.013 23.6 8.4 91 51-147 83-191 (393)
367 2rg8_A Programmed cell death p 22.1 1.2E+02 0.004 22.8 4.4 26 372-397 12-37 (165)
368 1ug3_A EIF4GI, eukaryotic prot 21.3 3.9E+02 0.013 22.9 9.4 25 198-222 14-38 (339)
369 2yru_A Steroid receptor RNA ac 21.2 1.3E+02 0.0045 21.0 4.1 42 31-72 48-89 (118)
370 3t5v_B Nuclear mRNA export pro 21.2 2.5E+02 0.0087 25.4 7.0 62 11-72 178-248 (455)
371 1ug3_A EIF4GI, eukaryotic prot 20.5 2.2E+02 0.0074 24.5 6.4 24 268-291 14-37 (339)
372 1oxz_A ADP-ribosylation factor 20.1 3E+02 0.01 21.1 7.8 97 374-482 35-141 (186)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.4e-42 Score=331.78 Aligned_cols=454 Identities=11% Similarity=0.028 Sum_probs=393.2
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
++...|+.++..|.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+|+++... ++++.+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 67788999999999999999999999999864 467789999999999999999999999998754 68899999999
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC---------------CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSK---------------GREPDVVTYTIVIDGLCKAKEFDKAVQAWEHM 151 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 151 (493)
.+|.+.|++ ++|+++|+++... |.+++..+|+.++.+|.+.|++++|++.|++|
T Consensus 158 ~~~~~~g~~-----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 158 FCLVKLYDW-----------QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp HHHHHTTCH-----------HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhH-----------HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999 5555666532111 23446889999999999999999999999999
Q ss_pred HHCCCCCCHHhHHHH--------------------------------------HHHHhccCchhHHHHHHHHHHhCCCCC
Q 043480 152 IENGIKPDNKACAAL--------------------------------------VVGLCGDGKVDLAYELTVGAMKGKVEF 193 (493)
Q Consensus 152 ~~~~~~~~~~~~~~l--------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 193 (493)
.+.+.. +...+..+ +..|.+.|++++|.++|+++.+. ++
T Consensus 227 ~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~ 303 (597)
T 2xpi_A 227 LMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EK 303 (597)
T ss_dssp HHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GG
T ss_pred HHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--Cc
Confidence 986421 33333322 44566789999999999998865 57
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 043480 194 GVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLK 273 (493)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 273 (493)
+..+++.++..|.+.|++++|.++|+++...+ +.+..++..++..+...|++++|..+++.+.+.. +.+..++..++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 89999999999999999999999999999775 5578889999999999999999999999998653 567889999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHH
Q 043480 274 GLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAM 353 (493)
Q Consensus 274 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 353 (493)
+|.+.|++++|...|.++....+. +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999886543 78899999999999999999999999999874 3478899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhC----CCCCC--HhhHHHHHHHHHhcCChhHHHHH
Q 043480 354 AEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQ----GITPD--VISYNALINGLCKSSRVSEAMHL 427 (493)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 427 (493)
|.++|+.+.+.. +.+..+|+.++..|.+.|++++|..+|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.
T Consensus 460 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 460 ANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999998865 568899999999999999999999999999875 66777 78999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 428 YEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAI 485 (493)
Q Consensus 428 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 485 (493)
++++.+.+ +.+..+|..++.+|.+.|++++|.+.++++++.. +.+...+..+...|
T Consensus 539 ~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 539 LNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 99998864 2389999999999999999999999999999862 33455665555444
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-40 Score=318.78 Aligned_cols=446 Identities=12% Similarity=0.017 Sum_probs=374.2
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhH
Q 043480 19 LVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLI 98 (493)
Q Consensus 19 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 98 (493)
+.+.|.+..+...+..+. .++...|+.++..+.+.|++++|+.+|+++... .|+..++..++.+|...|++
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~--- 133 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDY--- 133 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCH---
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcH---
Confidence 445566666766666542 356888999999999999999999999999854 67888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC---------------CCCCCHHhH
Q 043480 99 NILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN---------------GIKPDNKAC 163 (493)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~ 163 (493)
+.|+.+|+.+.. .+++..+++.++.+|.+.|++++|+++|+++... +.+++..++
T Consensus 134 --------~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (597)
T 2xpi_A 134 --------ARAKCLLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMC 203 (597)
T ss_dssp --------HHHHHHHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHH
T ss_pred --------HHHHHHHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHH
Confidence 666777777754 4678999999999999999999999999953321 223467899
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHH--------------------------------------HHHHH
Q 043480 164 AALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNA--------------------------------------LISGF 205 (493)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------------------------l~~~~ 205 (493)
..++.+|.+.|++++|.+.|+++.+.+ +.+...+.. ++..|
T Consensus 204 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 282 (597)
T 2xpi_A 204 YLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKT 282 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764 223333332 24556
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHH
Q 043480 206 CRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAY 285 (493)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 285 (493)
.+.|++++|.++|+++... +++..+++.++..|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|.
T Consensus 283 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
T 2xpi_A 283 SHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLY 359 (597)
T ss_dssp TTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHH
T ss_pred cCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHH
Confidence 6788999999999999865 6899999999999999999999999999998765 457889999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 043480 286 MFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN 365 (493)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 365 (493)
.++.++....+ .+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+.+.+.+
T Consensus 360 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 360 LISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999987654 478899999999999999999999999998863 3368899999999999999999999999999876
Q ss_pred CCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--
Q 043480 366 LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR----GAHPD-- 439 (493)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-- 439 (493)
+.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+
T Consensus 438 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 438 -QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp -TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred -ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 5688999999999999999999999999999863 457899999999999999999999999999775 66787
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhchhcc
Q 043480 440 EVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDAAN 492 (493)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 492 (493)
..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..+..+|...|+++
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPG 567 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHH
Confidence 8899999999999999999999999999874 557899999999999998764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5.1e-30 Score=234.62 Aligned_cols=383 Identities=14% Similarity=0.063 Sum_probs=236.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCC
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKN 94 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 94 (493)
++..+.+.|++++|++.++++.+.+ |.+...+..+...+...|++++|...++..++.. +.+..+|..+..++...|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4566777788888888887777765 5556666666777777777777777777776653 4456666777777777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccC
Q 043480 95 FTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDG 174 (493)
Q Consensus 95 ~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (493)
+ ++|++.|+++... .+.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|
T Consensus 83 ~-----------~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 149 (388)
T 1w3b_A 83 L-----------QEAIEHYRHALRL-KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALG 149 (388)
T ss_dssp H-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTS
T ss_pred H-----------HHHHHHHHHHHHc-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcc
Confidence 6 4445555555543 23344556666666666677777766666666542 112233444444444555
Q ss_pred chhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 043480 175 KVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVM 254 (493)
Q Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 254 (493)
++++|.+.|+++.... +.+..+|..+...+...|++++|...|+
T Consensus 150 ~~~~A~~~~~~al~~~------------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 193 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQ------------------------------------PNFAVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp CHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC------------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555444432 2234444445555555555555555555
Q ss_pred HHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC
Q 043480 255 EMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELD 334 (493)
Q Consensus 255 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 334 (493)
++.+.+ +.+...+..+...+...|++++|...+.+.....+. +..++..+...+...|++++|.+.|+++.+.++ .+
T Consensus 194 ~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~ 270 (388)
T 1w3b_A 194 KAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HF 270 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SC
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CC
Confidence 554432 223444555555555566666666666555554332 455566666666666666666666666666532 24
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 043480 335 VVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALING 414 (493)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 414 (493)
..++..+...+.+.|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+. .+.+..++..+..+
T Consensus 271 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~ 348 (388)
T 1w3b_A 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASV 348 (388)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHH
Confidence 5566677777777777777777777776654 556677777777777777777777777777764 23456677777777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 043480 415 LCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQEKK 455 (493)
Q Consensus 415 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 455 (493)
+.+.|++++|...++++.+. .| +...|..+...+...|+
T Consensus 349 ~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 349 LQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 77777777777777777764 34 56777777777666553
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=9.8e-30 Score=232.72 Aligned_cols=354 Identities=12% Similarity=0.012 Sum_probs=275.3
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 043480 125 VVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISG 204 (493)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (493)
...+..+...+...|++++|...++...+.. +.+..++..+...+...|++++|...|+++.... +.+...|..+..+
T Consensus 33 ~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 110 (388)
T 1w3b_A 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAA 110 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence 3344444445555555555555555554432 2344555555555555555555555555555432 3344556667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHH
Q 043480 205 FCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKA 284 (493)
Q Consensus 205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 284 (493)
+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 188 (388)
T 1w3b_A 111 LVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp HHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777776653 3345566777788888899999999999988753 44678899999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 043480 285 YMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM 364 (493)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 364 (493)
...|+++....+. +...+..+...+...|++++|...+++.....+ .+..++..+...+...|++++|...|+.+.+.
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 189 IHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999987654 677899999999999999999999999988743 36788999999999999999999999999987
Q ss_pred CCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 043480 365 NLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFK 444 (493)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 444 (493)
. +.+..+|..+...+.+.|++++|...++++++. .+.+..++..+...+...|++++|...++++.+.. +.+..++.
T Consensus 267 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 343 (388)
T 1w3b_A 267 Q-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHS 343 (388)
T ss_dssp C-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 5 567889999999999999999999999999986 35678899999999999999999999999998753 23688999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhch
Q 043480 445 LLIGGLVQEKKLELACRLWDQMMEKGFTL-DKTVSAALIEAIHLQD 489 (493)
Q Consensus 445 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ 489 (493)
.++.++.+.|++++|...++++.+. .| +...+..+-..+...|
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 344 NLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 9999999999999999999999974 44 4677777776665544
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.3e-31 Score=246.70 Aligned_cols=187 Identities=16% Similarity=0.253 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCC---------HHHHHHHHHHHHhCCCCCCHHh
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGS---------SAMAEKLLNQMRGMNLSPDRIL 372 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 372 (493)
.++.+|.+|++.|++++|+++|++|.+.|++||..||+.+|.+|++.+. .+.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3555566666666666666666666666666666666666666654432 4556666666666666666666
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043480 373 YTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQ 452 (493)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 452 (493)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 043480 453 EKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQ 488 (493)
Q Consensus 453 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 488 (493)
.|++++|.+++++|.+.|..|+..|++.++..++..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 666666666666666666666666666666665543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.8e-30 Score=240.73 Aligned_cols=215 Identities=17% Similarity=0.210 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 043480 213 RAMAIKSFMKWNGCEPDL-VTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKK 291 (493)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 291 (493)
.+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|.+.+....+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 344555666666555443 346777778888888888888888887777778888888887777765543211
Q ss_pred HHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 043480 292 MEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRI 371 (493)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 371 (493)
...+..++|.++|++|...|+.||..||+.++.+|++.|++++|.++|++|.+.|+.||..
T Consensus 81 -------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ 141 (501)
T 4g26_A 81 -------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR 141 (501)
T ss_dssp -------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred -------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Confidence 1123356777888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 451 (493)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|+.++|.+++++|.+.|..|+..||+.++..+.
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888877776
Q ss_pred hc
Q 043480 452 QE 453 (493)
Q Consensus 452 ~~ 453 (493)
..
T Consensus 222 s~ 223 (501)
T 4g26_A 222 SE 223 (501)
T ss_dssp SH
T ss_pred cC
Confidence 53
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-26 Score=219.00 Aligned_cols=441 Identities=11% Similarity=-0.008 Sum_probs=284.4
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
....+..++..+.+.|++++|+..|+++.+.+ |++..|..++.++...|++++|+..++++++.+ +.+..++..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 45678889999999999999999999999976 588999999999999999999999999998875 566788999999
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALV 167 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 167 (493)
++...|++ +.|+..|+++...+ +++......++..+........+.+.+..+...+..|+......-.
T Consensus 82 ~~~~~g~~-----------~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 149 (514)
T 2gw1_A 82 ANEGLGKF-----------ADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK 149 (514)
T ss_dssp HHHHTTCH-----------HHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------
T ss_pred HHHHHhhH-----------HHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh
Confidence 99999999 67778888888764 3455555555554444433333333333222221111111111000
Q ss_pred HHHhccCchhHHHHHHHHHHhCCC---------CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC----
Q 043480 168 VGLCGDGKVDLAYELTVGAMKGKV---------EFGVLIYNALISGFCR---TGRIRRAMAIKSFMKW-----NGC---- 226 (493)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~---- 226 (493)
..............+...+..... +.+...+......+.. .|++++|...++++.. ..-
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 229 (514)
T 2gw1_A 150 ERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNED 229 (514)
T ss_dssp -------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTC
T ss_pred HHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccc
Confidence 000011111111111111111000 1123333334444443 6777777777777766 210
Q ss_pred ----CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhh
Q 043480 227 ----EPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVS 302 (493)
Q Consensus 227 ----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 302 (493)
+.+...+..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...+.++....+. +...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 306 (514)
T 2gw1_A 230 EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSV 306 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHH
T ss_pred cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHH
Confidence 1224456666677777777777777777777654 33666777777777777777777777777765443 5566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 043480 303 YNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK 382 (493)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (493)
+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 307 YYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHH
Confidence 777777777778888888887777765332 55667777777777788888888777777643 4455677777777777
Q ss_pred cCCHhHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043480 383 SREIGTAYGVFLDMVEQGIT-PD----VISYNALINGLCK---SSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEK 454 (493)
Q Consensus 383 ~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 454 (493)
.|++++|...++++.+.... ++ ...+..+..++.. .|++++|...++++.+... .+..++..+..++.+.|
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhc
Confidence 78888888877777653111 11 2267777777777 7888888888877766532 25677777777888888
Q ss_pred CHHHHHHHHHHHHHc
Q 043480 455 KLELACRLWDQMMEK 469 (493)
Q Consensus 455 ~~~~a~~~~~~~~~~ 469 (493)
++++|...++++.+.
T Consensus 464 ~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 464 DIDEAITLFEESADL 478 (514)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888888877765
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=4.4e-25 Score=211.15 Aligned_cols=431 Identities=12% Similarity=0.057 Sum_probs=262.4
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
....+..++..+.+.|++++|++.|+++.+.+ |.++..|..++.++...|++++|++.|+++++.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 45678889999999999999999999999986 7788999999999999999999999999998875 567788999999
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC------CCCCCHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN------GIKPDNK 161 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~ 161 (493)
++...|++ +.|+..|+.+ .. .|+ .....+..+...+....|...++.+... ...|+..
T Consensus 102 ~~~~~g~~-----------~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 165 (537)
T 3fp2_A 102 ANESLGNF-----------TDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT 165 (537)
T ss_dssp HHHHHTCH-----------HHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH
T ss_pred HHHHcCCH-----------HHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh
Confidence 99999999 5566666522 21 222 1222234445556667888888887653 1223332
Q ss_pred hHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChh-hHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCH--
Q 043480 162 ACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVL-IYNALISGFCR--------TGRIRRAMAIKSFMKWNGCEPDL-- 230 (493)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-- 230 (493)
.. ..+....+.+.+...+...... .+... ....+...+.. .+++++|..+++++.+.. +.+.
T Consensus 166 ~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~ 238 (537)
T 3fp2_A 166 SL----ASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPL 238 (537)
T ss_dssp HH----HHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH
T ss_pred HH----HHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchh
Confidence 22 2223333333333222221111 11111 11222222111 135666666666666542 2222
Q ss_pred -----HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 043480 231 -----VTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNT 305 (493)
Q Consensus 231 -----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 305 (493)
.++..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...+.++....+. +..++..
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 315 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYH 315 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHH
Confidence 234445555666667777777777666543 44566666666666777777777777766665443 5556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 043480 306 VIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSRE 385 (493)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 385 (493)
+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|+
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGD 393 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCC
Confidence 66667777777777777776666532 244566666666677777777777777666543 4445566666666777777
Q ss_pred HhHHHHHHHHHHhCCC-----CCCHhhHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 386 IGTAYGVFLDMVEQGI-----TPDVISYNALINGLCKS----------SRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGL 450 (493)
Q Consensus 386 ~~~a~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 450 (493)
+++|...++++.+... ......+..+..++... |++++|...++++.+... .+..++..+..+|
T Consensus 394 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLK 472 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 7777777766654310 00111233334455555 777777777777665422 2566666677777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 043480 451 VQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~ 469 (493)
...|++++|.+.++++.+.
T Consensus 473 ~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 473 LQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh
Confidence 7777777777777776664
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=8.7e-25 Score=204.21 Aligned_cols=308 Identities=11% Similarity=0.008 Sum_probs=227.9
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
+...|.++..+..++..|.+.|++++|+.+|+++.+.+ |.+...|..++.++...|++++|+..|+++++.+ +.+..+
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 96 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAA 96 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 56678899999999999999999999999999999875 7788999999999999999999999999999875 556788
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCH---hhHHHH------------HHHHhccCCHHHHHH
Q 043480 82 YSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDV---VTYTIV------------IDGLCKAKEFDKAVQ 146 (493)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------~~~~~~~~~~~~a~~ 146 (493)
+..+..++...|++ +.|...|+++.... +.+. ..+..+ ...+...|++++|++
T Consensus 97 ~~~l~~~~~~~g~~-----------~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 97 RLQRGHLLLKQGKL-----------DEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHHHHHHHHTTCH-----------HHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHcCCH-----------HHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999 67778888887752 2234 555555 444888899999999
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043480 147 AWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGC 226 (493)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 226 (493)
.|+++.+.. +.+..++..+..++...|++++|...|+.+.+.. +.+..++..+...|...|++++|+..|+++....
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 241 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD- 241 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999988753 3467788888889999999999999998887654 4567888888888889999999999998887653
Q ss_pred CCCHHHHHHH------------HHHHHccCChHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHccCCHHHHHHHHH
Q 043480 227 EPDLVTYNAI------------LNYYCDEVMLDEAEKLVMEMESCGIEPD-----VYSYNQLLKGLCNSNQLDKAYMFMV 289 (493)
Q Consensus 227 ~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~ 289 (493)
+.+...+..+ ...+...|++++|...++.+.+.. |+ ...+..+..++.+.|++++|...+.
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344444433 555666666666666666665532 32 2245555566666666666666666
Q ss_pred HHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043480 290 KKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRR 329 (493)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (493)
++....+. +...|..+..+|...|++++|...++++.+.
T Consensus 320 ~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 320 EVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 65554322 4555666666666666666666666666553
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=3.6e-24 Score=200.02 Aligned_cols=372 Identities=10% Similarity=-0.018 Sum_probs=295.8
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCC
Q 043480 111 EVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGK 190 (493)
Q Consensus 111 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 190 (493)
..+...... .+.+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+.+.+..
T Consensus 13 ~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 13 LGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 344444443 35567889999999999999999999999998763 4478899999999999999999999999999875
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHccCChHHHHHHHHH
Q 043480 191 VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDL---VTYNAI------------LNYYCDEVMLDEAEKLVME 255 (493)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~ 255 (493)
+.+..++..+..+|.+.|++++|...|+++.... +.+. ..+..+ ...+...|++++|...++.
T Consensus 91 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 91 -MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4568889999999999999999999999999764 3334 555555 3448889999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH
Q 043480 256 MESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDV 335 (493)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 335 (493)
+.+.. +.+...+..+..+|.+.|++++|...|.++....+. +..++..+...+...|++++|...|+.+..... .+.
T Consensus 169 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~ 245 (450)
T 2y4t_A 169 ILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHK 245 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred HHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChH
Confidence 98754 457788999999999999999999999999887543 788899999999999999999999999987632 244
Q ss_pred hHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 043480 336 VTFTIL------------IKAFLREGSSAMAEKLLNQMRGMNLSPD----RILYTTIIDCLCKSREIGTAYGVFLDMVEQ 399 (493)
Q Consensus 336 ~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 399 (493)
..+..+ ...+...|++++|...|+.+.+.. +.+ ...+..+...+.+.|++++|...++++++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 444444 788999999999999999998753 223 457888999999999999999999999875
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHH------------HHHhcC-----CHHHHHH
Q 043480 400 GITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIG------------GLVQEK-----KLELACR 461 (493)
Q Consensus 400 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~------------~~~~~g-----~~~~a~~ 461 (493)
. +.+..+|..+..+|...|++++|...++++.+. .| +...+..+.. .|...| +.+++.+
T Consensus 325 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~ 401 (450)
T 2y4t_A 325 E-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIK 401 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHH
T ss_pred C-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHH
Confidence 2 446889999999999999999999999999885 45 5777777763 344445 5677888
Q ss_pred HHHH-HHHc--CCCCC-------HHHHHHHHHHHhhchhccC
Q 043480 462 LWDQ-MMEK--GFTLD-------KTVSAALIEAIHLQDAANK 493 (493)
Q Consensus 462 ~~~~-~~~~--~~~~~-------~~~~~~ll~~~~~~~~~~k 493 (493)
.+++ .++. ...|+ ...+..+..+|...++.+|
T Consensus 402 ~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 402 AYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 8887 4432 11122 2377788888887777653
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.2e-24 Score=202.58 Aligned_cols=409 Identities=10% Similarity=-0.054 Sum_probs=294.2
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
|++.+|..++.+|.+.|++++|+..|+++.+.+ |.+...|..++.++...|++++|...|+++...+ +++......++
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 114 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPML 114 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHH
Confidence 589999999999999999999999999999986 7778899999999999999999999999998876 44555555555
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC---------C
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGI---------K 157 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~ 157 (493)
..+...... ..+.+.+..+...+..|+...+..-...............+...+..... +
T Consensus 115 ~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (514)
T 2gw1_A 115 ERNLNKQAM-----------SKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDES 183 (514)
T ss_dssp HHHHHHHHH-----------HHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSS
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCC
Confidence 444332222 12222222221111111111111111111111111111111111111111 1
Q ss_pred CCHHhHHHHHHHHhc---cCchhHHHHHHHHHHh-----CCC--------CCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 158 PDNKACAALVVGLCG---DGKVDLAYELTVGAMK-----GKV--------EFGVLIYNALISGFCRTGRIRRAMAIKSFM 221 (493)
Q Consensus 158 ~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 221 (493)
.+...+......+.. .|++++|...|+++.+ ... +.+..++..+...+...|++++|...++++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 263 (514)
T 2gw1_A 184 NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKA 263 (514)
T ss_dssp CHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 123444444444443 7889999998888877 311 223567778888999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh
Q 043480 222 KWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKV 301 (493)
Q Consensus 222 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 301 (493)
.... |+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+.+.....+. +..
T Consensus 264 l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 339 (514)
T 2gw1_A 264 IELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIF 339 (514)
T ss_dssp HHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSH
T ss_pred HhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHH
Confidence 8764 337888888899999999999999999988754 456778888899999999999999999999887654 667
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHhHHHH
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNL-SPD----RILYTTI 376 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l 376 (493)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+... .++ ...+..+
T Consensus 340 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 418 (514)
T 2gw1_A 340 PYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK 418 (514)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 88888899999999999999999998763 33667888899999999999999999998876421 111 3378889
Q ss_pred HHHHHc---cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 377 IDCLCK---SREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 377 ~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
...+.. .|++++|...++++.+.. +.+..++..+..++...|++++|...|+++.+.
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999 999999999999998763 446778889999999999999999999999885
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=2.6e-22 Score=191.96 Aligned_cols=451 Identities=11% Similarity=0.022 Sum_probs=308.9
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
++..|.++.++..++.+|.+.|++++|++.|+++.+.+ |.+...+..++.++...|++++|+..|+.+ .. .|+..
T Consensus 52 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~--~~~~~- 126 (537)
T 3fp2_A 52 IELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVL-SL--NGDFD- 126 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C---------
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hc--CCCCC-
Confidence 34567899999999999999999999999999999987 778889999999999999999999999744 33 23221
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 043480 82 YSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKG--REPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD 159 (493)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 159 (493)
...+..+...+.. ..|...++.+.... ..+........+..+....+.+.+...+...... .+.
T Consensus 127 -~~~~~~~~~~~~~-----------~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 192 (537)
T 3fp2_A 127 -GASIEPMLERNLN-----------KQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTA 192 (537)
T ss_dssp ------CHHHHHHH-----------HHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSS
T ss_pred -hHHHHHHHHHHHH-----------HHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc--ccH
Confidence 1122223333333 55667777775431 0111112223344455566666665554443322 222
Q ss_pred HH-hHHHHHHHHhc--------cCchhHHHHHHHHHHhCCCCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 160 NK-ACAALVVGLCG--------DGKVDLAYELTVGAMKGKVEFG-------VLIYNALISGFCRTGRIRRAMAIKSFMKW 223 (493)
Q Consensus 160 ~~-~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 223 (493)
.. ....+...+.. .|++++|..+++.+.+.. +.+ ..++..+...+...|++++|...++++..
T Consensus 193 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~ 271 (537)
T 3fp2_A 193 YALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271 (537)
T ss_dssp HHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 22 22223322222 257889999999998764 222 23466777888899999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhH
Q 043480 224 NGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSY 303 (493)
Q Consensus 224 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 303 (493)
. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...+.++....+. +...+
T Consensus 272 ~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~ 347 (537)
T 3fp2_A 272 L--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPY 347 (537)
T ss_dssp H--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHH
T ss_pred c--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 6 5668888899999999999999999999998764 456788999999999999999999999999987654 66788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHhHHHHHH
Q 043480 304 NTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN-----LSPDRILYTTIID 378 (493)
Q Consensus 304 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~ 378 (493)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. .......+.....
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 899999999999999999999998874 3467788999999999999999999999987532 1112223445556
Q ss_pred HHHcc----------CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043480 379 CLCKS----------REIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIG 448 (493)
Q Consensus 379 ~~~~~----------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 448 (493)
.+... |++++|...++++.+.. +.+...+..+..+|...|++++|...|++..+.... +..... .+
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~-~~- 502 (537)
T 3fp2_A 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART-MDEKLQ-AT- 502 (537)
T ss_dssp HHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CHHHHH-HH-
T ss_pred HHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHH-HH-
Confidence 67777 99999999999999863 446788999999999999999999999999885322 222222 11
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhch
Q 043480 449 GLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQD 489 (493)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 489 (493)
.+.++...-..+. +.+.....+..++..++..|
T Consensus 503 ------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~~ 535 (537)
T 3fp2_A 503 ------TFAEAAKIQKRLR--ADPIISAKMELTLARYRAKG 535 (537)
T ss_dssp ------HHHHHHHHHHHHH--TC------------------
T ss_pred ------hHHHHHHHHHhcc--ccHHHHHHHhhHHHHHhhcc
Confidence 1233334434442 22334555666666666554
No 13
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=1.9e-20 Score=178.09 Aligned_cols=430 Identities=10% Similarity=0.031 Sum_probs=290.8
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
++..|.|..+|..++. +.+.|++++|+.+|+++.+.. |.+...|..++..+.+.|++++|..+|++++... |+...
T Consensus 6 l~~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~l 81 (530)
T 2ooe_A 6 LEENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDL 81 (530)
T ss_dssp HHHCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHH
T ss_pred hhhCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHH
Confidence 4567889999999998 588999999999999999985 7888899999999999999999999999999874 67777
Q ss_pred HHHHHHHH-hccCChhhHHHHHHHHHHHHHHHHHHHHhC-CCCC-CHhhHHHHHHHHhc---------cCCHHHHHHHHH
Q 043480 82 YSRFISGL-CEVKNFTLINILLDNMDKLALEVFHKMVSK-GREP-DVVTYTIVIDGLCK---------AKEFDKAVQAWE 149 (493)
Q Consensus 82 ~~~ll~~~-~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~-g~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~ 149 (493)
|..++... ...|+.+.|. +.+..+|+..... |..| +...|...+....+ .|+++.|..+|+
T Consensus 82 w~~~~~~~~~~~~~~~~a~-------~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~ 154 (530)
T 2ooe_A 82 WKCYLSYVRETKGKLPSYK-------EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ 154 (530)
T ss_dssp HHHHHHHHHHHTTTSTTHH-------HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchhhHH-------HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHH
Confidence 77777533 4567777766 3445566665543 4433 56678877776654 688999999999
Q ss_pred HHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------HH
Q 043480 150 HMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFM------KW 223 (493)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~ 223 (493)
+.++....+....|..........|. ..+.. ++. .+.+++..|..++... ..
T Consensus 155 ~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~ 212 (530)
T 2ooe_A 155 RGCVNPMINIEQLWRDYNKYEEGINI-HLAKK-------------------MIE--DRSRDYMNARRVAKEYETVMKGLD 212 (530)
T ss_dssp HHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHH-------------------HHH--TTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhchhhhHHHHHHHHHHHHHhhch-hHHHH-------------------HHH--HhhHHHHHHHHHHHHHHHHHHHhc
Confidence 99873111111222222111100010 00001 110 0123345555544442 11
Q ss_pred CC---CCCC--------HHHHHHHHHHHHcc----CCh----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-------
Q 043480 224 NG---CEPD--------LVTYNAILNYYCDE----VML----DEAEKLVMEMESCGIEPDVYSYNQLLKGLCN------- 277 (493)
Q Consensus 224 ~~---~~~~--------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 277 (493)
.. ++|+ ...|...+...... ++. ..+..+|+++.... +.++..|...+..+.+
T Consensus 213 ~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 213 RNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp SSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhh
Confidence 11 2333 23454444333221 222 36677787777642 4567777777777665
Q ss_pred cCCHH-------HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-H-hHHHHHHHHHHHc
Q 043480 278 SNQLD-------KAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELD-V-VTFTILIKAFLRE 348 (493)
Q Consensus 278 ~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~ 348 (493)
.|+++ +|..++++......+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHh
Confidence 67776 88888888876322336777888888888888999999999888875 333 2 4777888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 043480 349 GSSAMAEKLLNQMRGMNLSPDRILYTTIIDC-LCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHL 427 (493)
Q Consensus 349 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 427 (493)
|+.++|..+|+...+.. +.+...|...+.. +...|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|..+
T Consensus 370 ~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 88999999998888753 2233333332222 335788999999999888752 33577888888888888999999999
Q ss_pred HHHHHHcCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 428 YEEMQIRGA-HP--DEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 428 ~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
|++....+. .| ....|...+......|+.+.+..+.+++.+.
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999887532 22 2457888888888889999999988888765
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=6.8e-21 Score=172.12 Aligned_cols=330 Identities=11% Similarity=0.016 Sum_probs=216.5
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
|+..+..++..+.+.|++++|+..|+++.+.+ |.++..+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 56788899999999999999999999999886 6778899999999999999999999999998874 456788999999
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCC---CCHhhHHHH------------HHHHhccCCHHHHHHHHHHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGRE---PDVVTYTIV------------IDGLCKAKEFDKAVQAWEHMI 152 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~ 152 (493)
++...|++ +.|...+++..... + .+...+..+ ...+...|++++|++.++++.
T Consensus 80 ~~~~~~~~-----------~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 147 (359)
T 3ieg_A 80 LLLKQGKL-----------DEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL 147 (359)
T ss_dssp HHHHHTCH-----------HHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCh-----------HHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999 67778888887742 2 244445444 456667777777777777776
Q ss_pred HCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043480 153 ENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVT 232 (493)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 232 (493)
+.. +.+..++..+...+...|++++|...++.+.... +.+..++..+...+...|++++|...+++..+.. +.+...
T Consensus 148 ~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 224 (359)
T 3ieg_A 148 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRC 224 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHH
Confidence 543 2355666666666666777777777766666553 4455666666666666666666666666665542 222222
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHH
Q 043480 233 YNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDK----VSYNTVIE 308 (493)
Q Consensus 233 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~ 308 (493)
+..+... . .......+...+.+.|++++|...+.+.....+. +. ..+..+..
T Consensus 225 ~~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 225 FAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICH 280 (359)
T ss_dssp HHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHH
Confidence 2211000 0 0001112244455666666666666666554433 22 12334556
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 043480 309 AFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCL 380 (493)
Q Consensus 309 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (493)
++...|++++|...++...+.. +.+...+..+...+...|++++|...|+.+.+.. +.+...+..+..+.
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 6666666666666666666552 2255666666666666777777777777666654 34455555555444
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=1.3e-20 Score=170.21 Aligned_cols=335 Identities=12% Similarity=0.065 Sum_probs=230.5
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 043480 124 DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALIS 203 (493)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 203 (493)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45567777788888888888888888887753 3356777778888888888888888888877654 345667777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 043480 204 GFCRTGRIRRAMAIKSFMKWNGCE---PDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQ 280 (493)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 280 (493)
.+...|++++|...++++.+.. + .+...+..+..... ...+..+...+...|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 8888888888888888877652 2 23333333321100 0112233456666777
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043480 281 LDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQ 360 (493)
Q Consensus 281 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 360 (493)
+++|...+.++....+. +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.
T Consensus 136 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777777665443 55666677777777777777777777776653 33566677777777777777777777777
Q ss_pred HHhCCCCCCHHhHH------------HHHHHHHccCCHhHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCChhHH
Q 043480 361 MRGMNLSPDRILYT------------TIIDCLCKSREIGTAYGVFLDMVEQGITPDV----ISYNALINGLCKSSRVSEA 424 (493)
Q Consensus 361 ~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a 424 (493)
..+.. +.+...+. .+...+...|++++|...++++.+.. +.+. ..+..+..++...|++++|
T Consensus 214 a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 214 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 76643 33333332 23566788899999999999888753 2223 2344577888889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhchhc
Q 043480 425 MHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLD-KTVSAALIEAIHLQDAA 491 (493)
Q Consensus 425 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~ 491 (493)
...+++..+... .+..++..+..++...|++++|...++++.+. .|+ ...+..+..+....+..
T Consensus 292 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~ 356 (359)
T 3ieg_A 292 IRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLLKQS 356 (359)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHh
Confidence 999999887532 27888889999999999999999999999865 444 56667776666555443
No 16
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=3.7e-19 Score=169.19 Aligned_cols=418 Identities=9% Similarity=0.058 Sum_probs=289.3
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHH
Q 043480 32 FDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALE 111 (493)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~ 111 (493)
|++.++.+ |.+...|..++. +.+.|++++|..+|+++++.. +.+...|..++..+.+.|++ +.|..
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~-----------~~a~~ 67 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNY-----------DKVEK 67 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCH-----------HHHHH
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCH-----------HHHHH
Confidence 55666665 778889999998 478999999999999998864 56677899999999999999 67788
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHH-hccCCHHHHHH----HHHHHHHC-CCCC-CHHhHHHHHHHHhc---------cCc
Q 043480 112 VFHKMVSKGREPDVVTYTIVIDGL-CKAKEFDKAVQ----AWEHMIEN-GIKP-DNKACAALVVGLCG---------DGK 175 (493)
Q Consensus 112 ~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~ 175 (493)
+|++.+.. .|+...|..++... ...|+++.|.+ +|++.... |..| +...|...+..... .|+
T Consensus 68 ~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 145 (530)
T 2ooe_A 68 LFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR 145 (530)
T ss_dssp HHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred HHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH
Confidence 88888875 46777888777533 45677777665 77776543 4444 45566666655443 678
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 043480 176 VDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVME 255 (493)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 255 (493)
++.|..+|++.+..........|..........+. .+...++. ...+++..|..++..
T Consensus 146 ~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~ 203 (530)
T 2ooe_A 146 ITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKE 203 (530)
T ss_dssp HHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHH
Confidence 88888898888873111111222222111111110 01111111 123456666666655
Q ss_pred H------HHCC---CCCC--------hhhHHHHHHHHHcc----CCH----HHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 043480 256 M------ESCG---IEPD--------VYSYNQLLKGLCNS----NQL----DKAYMFMVKKMEAKGLRDKVSYNTVIEAF 310 (493)
Q Consensus 256 ~------~~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (493)
. .+.. ++|+ ...|...+...... ++. .++...|++++...+. ++..|..++..+
T Consensus 204 ~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~ 282 (530)
T 2ooe_A 204 YETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYL 282 (530)
T ss_dssp HHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 2 2221 2343 24555555433322 233 4778889999887554 778888888887
Q ss_pred HH-------cCCHH-------HHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HhHHH
Q 043480 311 CK-------GGQTR-------RAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDR-ILYTT 375 (493)
Q Consensus 311 ~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 375 (493)
.+ .|+++ +|..+|++..+.-.+.+...+..++..+.+.|++++|..+|+.+.+.. +.+. ..|..
T Consensus 283 ~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~ 361 (530)
T 2ooe_A 283 EQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQ 361 (530)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHH
T ss_pred HHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHH
Confidence 75 68887 899999999863234467888999999999999999999999999863 2333 58999
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043480 376 IIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALING-LCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEK 454 (493)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 454 (493)
++..+.+.|++++|..+|++.++.. +.+...|...+.. +...|++++|..+|++..+... .+...|..++..+.+.|
T Consensus 362 ~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g 439 (530)
T 2ooe_A 362 YMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLN 439 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999762 2233333332222 3468999999999999987532 26899999999999999
Q ss_pred CHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHhhchhc
Q 043480 455 KLELACRLWDQMMEKG-FTLD--KTVSAALIEAIHLQDAA 491 (493)
Q Consensus 455 ~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~ 491 (493)
+.++|..++++++..+ ..|+ ..+|...+......|+.
T Consensus 440 ~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 440 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp CHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred CHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999863 3332 45888777776666653
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.5e-20 Score=167.66 Aligned_cols=289 Identities=11% Similarity=-0.002 Sum_probs=154.1
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
..+.++.++..++..+...|++++|+++|+++.+.+ |.+...+..++.++...|++++|...++++.+.. +.++..+.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 345555556666666666666666666666666554 4445555555566666666666666666665543 33445555
Q ss_pred HHHHHHhccC-ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHh
Q 043480 84 RFISGLCEVK-NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKA 162 (493)
Q Consensus 84 ~ll~~~~~~~-~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 162 (493)
.+...+...| ++ +.|...|++.... .+.+...|..+...+...|++++|++.|+++.+.. +.+..+
T Consensus 95 ~l~~~~~~~~~~~-----------~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 161 (330)
T 3hym_B 95 AVGCYYLMVGHKN-----------EHARRYLSKATTL-EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLP 161 (330)
T ss_dssp HHHHHHHHSCSCH-----------HHHHHHHHHHHTT-CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHH
T ss_pred HHHHHHHHhhhhH-----------HHHHHHHHHHHHh-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHH
Confidence 5555555555 55 4444555555443 22234455555555666666666666665555432 112333
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 043480 163 CAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCD 242 (493)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 242 (493)
+..+...+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~al~~~------------------------------------~~~~~~~~~l~~~~~~ 205 (330)
T 3hym_B 162 MLYIGLEYGLTNNSKLAERFFSQALSIA------------------------------------PEDPFVMHEVGVVAFQ 205 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC------------------------------------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------------------------CCChHHHHHHHHHHHH
Confidence 4444444444555555555544444432 3334444445555555
Q ss_pred cCChHHHHHHHHHHHHCC--------CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC
Q 043480 243 EVMLDEAEKLVMEMESCG--------IEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGG 314 (493)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 314 (493)
.|++++|...++.+.+.. .+....++..+...+...|++++|...+.+.....+. +...+..+...+...|
T Consensus 206 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g 284 (330)
T 3hym_B 206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMG 284 (330)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhc
Confidence 555555555555443321 1223445566666666666666666666666655433 4555666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCcCHhHHHHHHHHH
Q 043480 315 QTRRAYKLFEGMRRRGIELDVVTFTILIKAF 345 (493)
Q Consensus 315 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (493)
++++|.+.+++..+.. +.+...+..+..++
T Consensus 285 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 285 NFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 6666666666665542 22445555555555
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=8.1e-18 Score=158.30 Aligned_cols=397 Identities=12% Similarity=0.022 Sum_probs=309.9
Q ss_pred hHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc----cCChhh
Q 043480 26 DQAVHVFDEMTQSNCRVFSIDYNRFIGVLIR----HSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE----VKNFTL 97 (493)
Q Consensus 26 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~ 97 (493)
..+++.++...+. .++..+..+...|.. .+++++|...|++..+.| ++..+..|...|.. .+++
T Consensus 24 ~~~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~-- 95 (490)
T 2xm6_A 24 NVNLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDY-- 95 (490)
T ss_dssp -CCHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH--
T ss_pred hHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH--
Confidence 3446666666554 357778888888888 899999999999998754 56677788888887 7888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc-
Q 043480 98 INILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCK----AKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCG- 172 (493)
Q Consensus 98 a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 172 (493)
++|.+.|++....| +...+..+...|.. .+++++|++.|++..+.| +..++..+...|..
T Consensus 96 ---------~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g 160 (490)
T 2xm6_A 96 ---------AQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEG 160 (490)
T ss_dssp ---------HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 56677777777654 66777778888887 789999999999998875 66778888888876
Q ss_pred ---cCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---
Q 043480 173 ---DGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCR----TGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCD--- 242 (493)
Q Consensus 173 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--- 242 (493)
.++.++|.+.|++..+.+ +...+..+...|.. .++.++|.++|++..+.+ +...+..+...|..
T Consensus 161 ~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g 234 (490)
T 2xm6_A 161 DGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIG 234 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 789999999999998864 67788888888888 899999999999998765 56677777777775
Q ss_pred -cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc----
Q 043480 243 -EVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCN----SNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKG---- 313 (493)
Q Consensus 243 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 313 (493)
.+++++|...|+...+.+ +...+..+..+|.. .++.++|...|++..+. .+...+..+...|...
T Consensus 235 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~~~~g~ 308 (490)
T 2xm6_A 235 VTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ---GNSDGQYYLAHLYDKGAEGV 308 (490)
T ss_dssp SCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHCBTTB
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCC
Confidence 789999999999988754 45566677777777 88999999999998865 3566777888888887
Q ss_pred -CCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCC
Q 043480 314 -GQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREG---SSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK----SRE 385 (493)
Q Consensus 314 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 385 (493)
+++++|...|++..+.+ +...+..+...|...| +.++|..+|+...+. .+...+..+...|.. .++
T Consensus 309 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 309 AKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCC
T ss_pred cCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCC
Confidence 89999999999998875 4566777777777756 789999999999875 356788888888888 789
Q ss_pred HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHH
Q 043480 386 IGTAYGVFLDMVEQGITPDVISYNALINGLCK----SSRVSEAMHLYEEMQIRGAH-P-DEVTFKLLIGGLVQEKKLELA 459 (493)
Q Consensus 386 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~a 459 (493)
+++|...|++..+.| +...+..|...|.. .+++++|...|++..+.+.. | +......+...+.. +.+.+
T Consensus 383 ~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a 457 (490)
T 2xm6_A 383 EQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQA 457 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHH
T ss_pred HHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHH
Confidence 999999999999875 56778888888887 89999999999999887643 2 34444444433332 33444
Q ss_pred HHHHHHHHH
Q 043480 460 CRLWDQMME 468 (493)
Q Consensus 460 ~~~~~~~~~ 468 (493)
.+...+..+
T Consensus 458 ~~~a~~~~~ 466 (490)
T 2xm6_A 458 ELLSQQYIE 466 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=7.9e-18 Score=158.38 Aligned_cols=355 Identities=11% Similarity=0.052 Sum_probs=299.0
Q ss_pred CcchhhHHHHHHHHHH----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHhccCCCCc
Q 043480 6 GAQRLIYRAQISNLVK----AGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIR----HSRFDLVQFYYQQMHPLGFSL 77 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 77 (493)
+.++..+..+...|.. .+++++|++.|++..+.| ++..+..+...|.. .+++++|...|++..+.+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 4578888899999998 899999999999998864 46778889999998 899999999999998864
Q ss_pred ChhhHHHHHHHHhc----cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHH
Q 043480 78 TPFTYSRFISGLCE----VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCK----AKEFDKAVQAWE 149 (493)
Q Consensus 78 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 149 (493)
++..+..|...|.. .+++ ++|+..|++....| +...+..+...|.. .+++++|++.|+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~-----------~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDK-----------AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCH-----------HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCH-----------HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 56677778888877 6788 66777777777654 56778888888887 789999999999
Q ss_pred HHHHCCCCCCHHhHHHHHHHHhc----cCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 043480 150 HMIENGIKPDNKACAALVVGLCG----DGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCR----TGRIRRAMAIKSFM 221 (493)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 221 (493)
+..+.| +..++..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++.
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 999874 67888888888887 899999999999999865 56677888888886 78999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc-----CCHHHHHHHHHHHH
Q 043480 222 KWNGCEPDLVTYNAILNYYCD----EVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNS-----NQLDKAYMFMVKKM 292 (493)
Q Consensus 222 ~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~ 292 (493)
.+.+ +...+..+...+.. .++.++|...|+...+.| ++..+..+...|... +++++|...+.+..
T Consensus 250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 8765 45666677777777 899999999999998754 456777788888877 89999999999998
Q ss_pred HcCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhCC
Q 043480 293 EAKGLRDKVSYNTVIEAFCKGG---QTRRAYKLFEGMRRRGIELDVVTFTILIKAFLR----EGSSAMAEKLLNQMRGMN 365 (493)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 365 (493)
+.+ +...+..+...|...| ++++|.+.|++..+.+ +...+..+...|.. .+++++|...|+...+.+
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 863 5677888888888766 7899999999998874 67788888888888 899999999999999865
Q ss_pred CCCCHHhHHHHHHHHHc----cCCHhHHHHHHHHHHhCCC
Q 043480 366 LSPDRILYTTIIDCLCK----SREIGTAYGVFLDMVEQGI 401 (493)
Q Consensus 366 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 401 (493)
+...+..+...|.. .+++++|...|++..+.+.
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 56778888888887 8999999999999998753
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=8.9e-20 Score=162.72 Aligned_cols=285 Identities=11% Similarity=0.002 Sum_probs=143.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 043480 194 GVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLK 273 (493)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 273 (493)
+...+..+...+...|++++|.++++++.... +.+...+..++..+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 33344444444555555555555555544432 2233334444444455555555555555554432 223444445555
Q ss_pred HHHccC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHH
Q 043480 274 GLCNSN-QLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSA 352 (493)
Q Consensus 274 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 352 (493)
.+...| ++++|...|.++....+. +...|..+...+...|++++|...++++.+.... +...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 555555 555555555555544322 3444555555555555555555555555544221 3344444555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCC--------CCCCHhhHHHHHHHHHhcCChhHH
Q 043480 353 MAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQG--------ITPDVISYNALINGLCKSSRVSEA 424 (493)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~a 424 (493)
+|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+..++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 5555555555443 3445555555555555566666655555555320 022234555555566666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 425 MHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAI 485 (493)
Q Consensus 425 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 485 (493)
...+++..+.... +...+..+..++...|++++|.+.++++.+.. +.+...+..+..++
T Consensus 256 ~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 6666665553211 45555556666666666666666666555431 22344444444444
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=7.6e-20 Score=165.88 Aligned_cols=267 Identities=10% Similarity=-0.047 Sum_probs=187.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 043480 196 LIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGL 275 (493)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (493)
..+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555555666666666666555543 3445555555555556666666666665555443 23455555555566
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHH-H--------------HHHHHHHcCCHHHHHHHHHHHHHcCCCc-CHhHHH
Q 043480 276 CNSNQLDKAYMFMVKKMEAKGLRDKVSYN-T--------------VIEAFCKGGQTRRAYKLFEGMRRRGIEL-DVVTFT 339 (493)
Q Consensus 276 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 339 (493)
...|++++|...+.++....+.. ...+. . .+..+...|++++|...++++.+..+.. +..++.
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 66666666666666555543321 11111 0 1233337889999999999998764332 577888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 043480 340 ILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSS 419 (493)
Q Consensus 340 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 419 (493)
.+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++++.. +.+..++..+..+|...|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCC
Confidence 99999999999999999999988764 5678899999999999999999999999998763 446788999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 420 RVSEAMHLYEEMQIRGAHP----------DEVTFKLLIGGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 467 (493)
++++|...++++.+..... ...+|..+..+|...|++++|..++++.+
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 9999999999986642221 27889999999999999999998887554
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=3.1e-19 Score=161.85 Aligned_cols=312 Identities=13% Similarity=0.002 Sum_probs=188.8
Q ss_pred HcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH-HHHHhccCCCC-c--ChhhHHHHHHHHhccCChh
Q 043480 21 KAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQF-YYQQMHPLGFS-L--TPFTYSRFISGLCEVKNFT 96 (493)
Q Consensus 21 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~-~--~~~~~~~ll~~~~~~~~~~ 96 (493)
..+.++.+...|+.+...+ |+ .+...|++++|+. .|++....... | +...+..+...+...|++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~- 80 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRD--AE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDL- 80 (368)
T ss_dssp --------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCH-
T ss_pred CcccHHHHHHHHHHHHcCC--ch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCH-
Confidence 3445555555555554433 11 2233456666666 66655543211 1 234455666666666766
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCch
Q 043480 97 LINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKV 176 (493)
Q Consensus 97 ~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (493)
+.|+..|+++... .+.+..++..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++
T Consensus 81 ----------~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 148 (368)
T 1fch_A 81 ----------PNAVLLFEAAVQQ-DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 148 (368)
T ss_dssp ----------HHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred ----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCH
Confidence 4555566666554 23455666666666777777777777777666543 23556666666667777777
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHH---------------HHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 043480 177 DLAYELTVGAMKGKVEFGVLIYNA---------------LISGFCRTGRIRRAMAIKSFMKWNGCEP--DLVTYNAILNY 239 (493)
Q Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~ 239 (493)
++|...++.+..... .+...+.. .+..+...|++++|...++++.... +. +..++..+...
T Consensus 149 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~ 226 (368)
T 1fch_A 149 RQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVL 226 (368)
T ss_dssp HHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHH
Confidence 777777776665431 12222211 1233337788888888888887763 22 47778888888
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHH
Q 043480 240 YCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRA 319 (493)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 319 (493)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+.++....+. +...+..+..++...|++++|
T Consensus 227 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 227 FNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHH
Confidence 888888888888888887653 345677888888888888888888888888876543 667788888888888888888
Q ss_pred HHHHHHHHHcCCCc----------CHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043480 320 YKLFEGMRRRGIEL----------DVVTFTILIKAFLREGSSAMAEKLLNQ 360 (493)
Q Consensus 320 ~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 360 (493)
...|+++.+..... ...++..+..++...|+.++|..++..
T Consensus 305 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 305 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 88888877642211 157788888888888998888887763
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=1.3e-19 Score=164.01 Aligned_cols=269 Identities=10% Similarity=-0.072 Sum_probs=201.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 043480 194 GVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLK 273 (493)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 273 (493)
+...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34456677777777777777777777777654 5566777777777777888888888887777653 345667777777
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCC---------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cCHhHHHHHHH
Q 043480 274 GLCNSNQLDKAYMFMVKKMEAKGLR---------DKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIE-LDVVTFTILIK 343 (493)
Q Consensus 274 ~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 343 (493)
+|...|++++|...+.++....+.. ....+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 7888888888888877777643220 1122344577888889999999999999887433 15788889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 043480 344 AFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSE 423 (493)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 423 (493)
.+...|++++|...++.+.+.. +.+..+|..+..+|...|++++|...++++++.. +.+..++..+..+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999988765 5678899999999999999999999999998763 3457889999999999999999
Q ss_pred HHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 424 AMHLYEEMQIRGAH-----------PDEVTFKLLIGGLVQEKKLELACRLWDQM 466 (493)
Q Consensus 424 a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 466 (493)
|...++++.+.... .+..+|..+..++...|+.+.+.++.++-
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 99999998664211 13678999999999999999988877653
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=2.3e-19 Score=162.38 Aligned_cols=235 Identities=8% Similarity=-0.079 Sum_probs=171.4
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
+...+..++..+.+.|++++|++.|+++.+.+ |.+..+|..++.++...|++++|+..|+++++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44558899999999999999999999999986 7788999999999999999999999999998875 556889999999
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCC----------HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPD----------VVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIK 157 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (493)
++...|+++. |+..++++.... +.+ ...+..+...+...|++++|++.|+++.+....
T Consensus 142 ~~~~~g~~~~-----------A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 209 (365)
T 4eqf_A 142 SYTNTSHQQD-----------ACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD 209 (365)
T ss_dssp HHHHTTCHHH-----------HHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCS
T ss_pred HHHccccHHH-----------HHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC
Confidence 9999999954 555555555431 111 223334577888888888888888888875321
Q ss_pred -CCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043480 158 -PDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAI 236 (493)
Q Consensus 158 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 236 (493)
++..++..+...+...|++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++.... +.+..++..+
T Consensus 210 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (365)
T 4eqf_A 210 MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNL 287 (365)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHH
Confidence 146677777777777788888888777777654 4456677777777777777777777777776653 4446667777
Q ss_pred HHHHHccCChHHHHHHHHHHHH
Q 043480 237 LNYYCDEVMLDEAEKLVMEMES 258 (493)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~ 258 (493)
...+...|++++|...++++.+
T Consensus 288 ~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 288 GISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777777654
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=4.1e-17 Score=153.16 Aligned_cols=401 Identities=11% Similarity=-0.039 Sum_probs=246.6
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhccC--------CCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHH
Q 043480 41 RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL--------GFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEV 112 (493)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~ 112 (493)
+.....||.+..++...|++++|++.|++.++. ..+....+|+.+..+|...|++++|...++ +++++
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~----ka~~i 123 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVD----KVKHV 123 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHH----HHHHH
Confidence 344667999999999999999999999987652 112345678899999999999987776663 34444
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH---HhccCchhHHHHHHHHHH
Q 043480 113 FHKMVSKGREPDVVTYTIVIDGLCK--AKEFDKAVQAWEHMIENGIKPDNKACAALVVG---LCGDGKVDLAYELTVGAM 187 (493)
Q Consensus 113 ~~~~~~~g~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~ 187 (493)
..............++.....++.. .+++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+++..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al 202 (472)
T 4g1t_A 124 CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI 202 (472)
T ss_dssp HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH
T ss_pred hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 4443322112234566666555544 457999999999998763 2234455554444 345677888999998888
Q ss_pred hCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 043480 188 KGKVEFGVLIYNALISGFCR----TGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEP 263 (493)
Q Consensus 188 ~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 263 (493)
+.. +.+..++..+...+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.. +.
T Consensus 203 ~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 279 (472)
T 4g1t_A 203 RLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PN 279 (472)
T ss_dssp HHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred hcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CC
Confidence 754 4455666666555544 456788999999887764 6677888889999999999999999999988753 34
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHH
Q 043480 264 DVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIK 343 (493)
Q Consensus 264 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 343 (493)
+..++..+..+|...+....+ .. ...........+..+.|...++....... .+..++..+..
T Consensus 280 ~~~~~~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~ 342 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILAS 342 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHH
Confidence 555666666555322111100 00 00000111112345778888888776643 35667788888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHH--hHHHHHH-HHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043480 344 AFLREGSSAMAEKLLNQMRGMNLSPDRI--LYTTIID-CLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR 420 (493)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (493)
.+...|++++|...|++..+....+... .+..+.. .....|++++|...|++.++. .|+...... .
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~ 411 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------M 411 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------H
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------H
Confidence 8889999999999998888765333221 2223322 234678899999999988875 454332222 2
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHH
Q 043480 421 VSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKG-FTLDKTVS 478 (493)
Q Consensus 421 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ 478 (493)
...+.+++++....++ .+..+|..+..+|...|++++|.+.++++++.+ ..|+...|
T Consensus 412 ~~~l~~~~~~~l~~~p-~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKNG-ADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 2345566666665432 267889999999999999999999999998863 33444433
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=2e-18 Score=153.71 Aligned_cols=234 Identities=12% Similarity=-0.007 Sum_probs=148.2
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
.+...+..++..+...|++++|+.+|+++.+.+ |.+...+..++.++...|++++|...++++.+.. +.+..++..+.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 355667889999999999999999999999876 6788889999999999999999999999998875 55778899999
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHH--------------HH-HHhccCCHHHHHHHHHHH
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIV--------------ID-GLCKAKEFDKAVQAWEHM 151 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~ 151 (493)
.++...|++ +.|++.++++.... +.+...+..+ .. .+...|++++|.+.++++
T Consensus 97 ~~~~~~~~~-----------~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 97 VSHTNEHNA-----------NAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164 (327)
T ss_dssp HHHHHTTCH-----------HHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCH-----------HHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH
Confidence 999999999 66667777777652 2233334333 11 245555666666666665
Q ss_pred HHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 043480 152 IENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLV 231 (493)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 231 (493)
.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+..
T Consensus 165 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 241 (327)
T 3cv0_A 165 LEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVR 241 (327)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHH
Confidence 5442 2234455555555555555555555555554432 2234444445555555555555555555544432 22344
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHH
Q 043480 232 TYNAILNYYCDEVMLDEAEKLVMEME 257 (493)
Q Consensus 232 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 257 (493)
.+..+...+...|++++|...++.+.
T Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 242 VMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=2.1e-18 Score=152.49 Aligned_cols=283 Identities=11% Similarity=0.078 Sum_probs=132.7
Q ss_pred HcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHH
Q 043480 21 KAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINI 100 (493)
Q Consensus 21 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 100 (493)
+.|++++|.+.++++.. +.+|..++.++.+.|++++|++.|.+ .+|+..|..++.++...|++
T Consensus 15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~----- 77 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNW----- 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCH-----
Confidence 66889999999999832 35899999999999999999999965 35777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHH
Q 043480 101 LLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAY 180 (493)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 180 (493)
++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..++..++..|...|.+++|.
T Consensus 78 ------EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~ 142 (449)
T 1b89_A 78 ------EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAK 142 (449)
T ss_dssp ---------------------------------------CHHHHTTTTT-------CC----------------CTTTHH
T ss_pred ------HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 5555655555442 4457788889999999999999988874 367789999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 043480 181 ELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCG 260 (493)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 260 (493)
..|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......
T Consensus 143 ~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~----- 202 (449)
T 1b89_A 143 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH----- 202 (449)
T ss_dssp HHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----
T ss_pred HHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----
Confidence 999976 47999999999999999999999988 2789999999999999999999554443
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCc------
Q 043480 261 IEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRR-GIEL------ 333 (493)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------ 333 (493)
+...+.-...++..|.+.|.+++|..+++..+... ..-...|+-+.-.|++- ++++.++.++...+. +++|
T Consensus 203 L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~ 280 (449)
T 1b89_A 203 IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAE 280 (449)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHH
T ss_pred HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 23444445678899999999999999999988765 33566777777777764 344444444443322 2222
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHH
Q 043480 334 DVVTFTILIKAFLREGSSAMAEKL 357 (493)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~a~~~ 357 (493)
+...|..+...|...++++.|...
T Consensus 281 ~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 281 QAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHH
Confidence 456788888889999999988764
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=7.6e-17 Score=151.34 Aligned_cols=381 Identities=10% Similarity=-0.094 Sum_probs=250.8
Q ss_pred CcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 76 SLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGRE-PDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 76 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
......|+.+...+...|++++|.+.+ ++|++++......... ....+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~----~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i 123 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECL----RKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV 123 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHH----HHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 344567899999999999998888777 4566666655432223 34578999999999999999999999887642
Q ss_pred -----C-CCC-CHHhHHHHHHHHhc--cCchhHHHHHHHHHHhCCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHH
Q 043480 155 -----G-IKP-DNKACAALVVGLCG--DGKVDLAYELTVGAMKGKVEFGVLIYNALISG---FCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 155 -----~-~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~ 222 (493)
+ ..+ ...++..+..++.. .+++++|...|++..+.. +.+...+..+..+ +...++.++|++.+++..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al 202 (472)
T 4g1t_A 124 CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI 202 (472)
T ss_dssp HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH
T ss_pred hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 1 111 24556555555544 457899999999988764 3345555555444 334567778888888877
Q ss_pred HCCCCCCHHHHHHHHHHHH----ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 043480 223 WNGCEPDLVTYNAILNYYC----DEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR 298 (493)
Q Consensus 223 ~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 298 (493)
+.. +.+...+..+...+. ..+++++|...+++..... +.+...+..+...|...|++++|...+.++....+.
T Consensus 203 ~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~- 279 (472)
T 4g1t_A 203 RLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN- 279 (472)
T ss_dssp HHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-
T ss_pred hcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-
Confidence 654 445666655554444 3467788888888887654 456777888888999999999999999998887654
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 043480 299 DKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIID 378 (493)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 378 (493)
+..++..+..+|...+... ... ............+..+.|...++...+.. +.+...+..+..
T Consensus 280 ~~~~~~~lg~~y~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~ 342 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQV---------MNL-------RENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILAS 342 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh---------hhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHH
Confidence 5566666655553221110 000 00001111112334678889998888765 566678889999
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCCHh--hHHHHHH-HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043480 379 CLCKSREIGTAYGVFLDMVEQGITPDVI--SYNALIN-GLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKK 455 (493)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 455 (493)
.+...|++++|...|++.++....|... .+..+.. .....|++++|+..+++..+. .|+...... .
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~ 411 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------M 411 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------H
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------H
Confidence 9999999999999999999864333221 2333332 335789999999999999884 454332222 2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhchhccC
Q 043480 456 LELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDAANK 493 (493)
Q Consensus 456 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~k 493 (493)
...+.+++++.++.+ +.+..++..+-..|...|+.++
T Consensus 412 ~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~ 448 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQ 448 (472)
T ss_dssp HHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 344556666666543 4567888999889988887653
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=3.5e-18 Score=152.11 Aligned_cols=266 Identities=9% Similarity=-0.047 Sum_probs=180.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 043480 197 IYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLC 276 (493)
Q Consensus 197 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 276 (493)
.+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 33444445555555555555555554432 3344455555555555555555555555554432 234445555555555
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHH
Q 043480 277 NSNQLDKAYMFMVKKMEAKGLRDKVSYNTV--------------IE-AFCKGGQTRRAYKLFEGMRRRGIELDVVTFTIL 341 (493)
Q Consensus 277 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 341 (493)
..|++++|...+.++....+. +...+..+ .. .+...|++++|.+.++++.+... .+...+..+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 178 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASL 178 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHH
Confidence 555555555555555544322 12222221 22 25667888899999988887643 367788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 043480 342 IKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRV 421 (493)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 421 (493)
...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 889999999999999999888765 5667888999999999999999999999988753 44677888999999999999
Q ss_pred hHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 422 SEAMHLYEEMQIRGAHP-----------DEVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 422 ~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
++|.+.++++.+....+ +..++..+..++...|++++|..++++.++
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999987653221 477888999999999999999998876543
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=3.9e-15 Score=147.17 Aligned_cols=403 Identities=13% Similarity=0.109 Sum_probs=285.7
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCR---VFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
.||.--...+++|+..|.+.+|+++++++.-.+ . .+....+.++..-.+. +..+..+..++.-.. ...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~-s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~ 1053 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDN-SVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAP 1053 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCC-CcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHH
Confidence 344455678899999999999999999998432 2 2345566666555555 444555554444211 123
Q ss_pred HHHHHHhccCChhhHHHHHHHHH----------------HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 043480 84 RFISGLCEVKNFTLINILLDNMD----------------KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQA 147 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~----------------~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 147 (493)
.+...+...|.+++|..++++.. ++|.++.++. -+..+|..+..++...|++++|++.
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 34555666666666666665543 3333333322 2467888899999999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043480 148 WEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCE 227 (493)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (493)
|.+. -|...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.+++++..... + .
T Consensus 1128 YiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1128 YIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred HHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence 8653 377788889999999999999999998877754 33344446888899998888544332 1 4
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 043480 228 PDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVI 307 (493)
Q Consensus 228 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 307 (493)
++...+..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+..+|..+.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence 56677778888999999999999999885 37888999999999999999988876 3668888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc--CC
Q 043480 308 EAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKS--RE 385 (493)
Q Consensus 308 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~ 385 (493)
.+|...|++..|......+ ..++..+..++..|.+.|.+++|+++++...... +-....|+.+...|++. ++
T Consensus 1258 ~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHH
Confidence 8898999988888766543 2366777889999999999999999998888665 55667787777777664 34
Q ss_pred HhHHHHHHHHHHhCCCCC------CHhhHHHHHHHHHhcCChhHHHHHH-------------HHHHHcCCCCCHHHHHHH
Q 043480 386 IGTAYGVFLDMVEQGITP------DVISYNALINGLCKSSRVSEAMHLY-------------EEMQIRGAHPDEVTFKLL 446 (493)
Q Consensus 386 ~~~a~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~-------------~~~~~~~~~p~~~~~~~l 446 (493)
..++.++|..-.. ++| +...|..+...|.+.|+++.|.... +..... ..|+..|...
T Consensus 1332 lmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyyka 1407 (1630)
T 1xi4_A 1332 MREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRA 1407 (1630)
T ss_pred HHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHH
Confidence 5556666554332 222 4677999999999999999988322 222211 2367777777
Q ss_pred HHHHHhcC---------------CHHHHHHHHH
Q 043480 447 IGGLVQEK---------------KLELACRLWD 464 (493)
Q Consensus 447 ~~~~~~~g---------------~~~~a~~~~~ 464 (493)
+.-|...+ |++.+.+++.
T Consensus 1408 i~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1408 IQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 77777666 6666666655
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.3e-17 Score=147.43 Aligned_cols=333 Identities=11% Similarity=0.115 Sum_probs=160.5
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
+++.+|..|+.++.+.|++++|++.|.+. +|...|..++..+...|++++|+..++..++. .+++.+.+.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 45679999999999999999999999653 56778999999999999999999988877764 56678899999
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAAL 166 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (493)
.+|.+.|++. .+.++++ .|+..+|+.+...|...|++++|...|..+ ..|..+
T Consensus 102 ~~Y~Klg~l~-----------e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~L 154 (449)
T 1b89_A 102 FALAKTNRLA-----------ELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 154 (449)
T ss_dssp -------CHH-----------HHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHH
T ss_pred HHHHHhCCHH-----------HHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHH
Confidence 9999999994 4444442 467789999999999999999999999976 479999
Q ss_pred HHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 043480 167 VVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVML 246 (493)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 246 (493)
+.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++.....++..|.+.|.+
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCH
Confidence 99999999999999999988 27889999999999999999996655442 33444456788999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc--CCHHHHHHHHHHHHHcCC----CCChhhHHHHHHHHHHcCCHHHHH
Q 043480 247 DEAEKLVMEMESCGIEPDVYSYNQLLKGLCNS--NQLDKAYMFMVKKMEAKG----LRDKVSYNTVIEAFCKGGQTRRAY 320 (493)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~ 320 (493)
+++..+++...... +-....|+-+.-+|++- +++.+.++.|...+...+ ..+...|..+...|...++++.|.
T Consensus 224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 224 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 99999999988654 44566777776666653 455555555543221100 014567889999999999999886
Q ss_pred HHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHH
Q 043480 321 KLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLD 395 (493)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 395 (493)
. .|.++ +++...-..+.....+..+.+--.+...-..+. .| ..++.++.++...=|..++..++++
T Consensus 303 ~---tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p--~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 303 I---TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp H---HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred H---HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CH--HHHHHHHHHHHhccCcHHHHHHHHH
Confidence 5 34443 233333334444445555555444433333321 22 2356666666555555555555543
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=3e-15 Score=148.00 Aligned_cols=377 Identities=12% Similarity=0.072 Sum_probs=210.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhccCC--CCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCC
Q 043480 44 SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG--FSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGR 121 (493)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~ 121 (493)
+.--...+++|...|.+.+|+++++++...+ ++.+...-+.++.+..+. +.. +..+...++.
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~-----------Rv~eyI~kLd---- 1048 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRT-----------RVMEYINRLD---- 1048 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-Chh-----------hHHHHHHHhh----
Confidence 3344567788889999999999999998442 113344555566665555 332 2222333221
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHH
Q 043480 122 EPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNAL 201 (493)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (493)
......+...+...|.+++|..+|++... .....+.++. ..+++++|.++.+++. +..+|..+
T Consensus 1049 ---~~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqL 1111 (1630)
T 1xi4_A 1049 ---NYDAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQL 1111 (1630)
T ss_pred ---hccHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHH
Confidence 11123355666667777777777776421 1122222222 4566666666666442 35566667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH
Q 043480 202 ISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQL 281 (493)
Q Consensus 202 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 281 (493)
..++...|++++|.+.|.+. .|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|.+.+++
T Consensus 1112 AKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1112 AKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRL 1183 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCH
Confidence 77777777777777766543 355666666777777777777777776655533 3333333466666666666
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043480 282 DKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQM 361 (493)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 361 (493)
++... | +. .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.++..
T Consensus 1184 eele~-f---I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1184 AELEE-F---IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHH-H---Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 64322 2 11 124445555666666677777777666663 25666666666677777766666654
Q ss_pred HhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 043480 362 RGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEV 441 (493)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 441 (493)
.+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-+..
T Consensus 1248 ------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~g 1315 (1630)
T 1xi4_A 1248 ------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMG 1315 (1630)
T ss_pred ------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhH
Confidence 23356666666666666666666554432 2244455566666666666666666666655432 11344
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHhhchhc
Q 043480 442 TFKLLIGGLVQE--KKLELACRLWDQMMEKGFTL------DKTVSAALIEAIHLQDAA 491 (493)
Q Consensus 442 ~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~~~~ 491 (493)
.|+-+...|.+. ++..++.+.|..-. ++++ +...|..++.-|.+.|++
T Consensus 1316 mftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~ 1371 (1630)
T 1xi4_A 1316 MFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEY 1371 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccH
Confidence 554454444443 33334443333221 2222 344555555555555544
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=3.4e-17 Score=142.01 Aligned_cols=253 Identities=11% Similarity=0.008 Sum_probs=124.8
Q ss_pred HHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChh
Q 043480 17 SNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFT 96 (493)
Q Consensus 17 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 96 (493)
+.....|++..|+..++.....++.+.......+.++|...|+++.|+..++.. -+|+..++..+...+...++.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~- 81 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR- 81 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH-
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH-
Confidence 344455666666666655544321111223344455666666666666544331 134445555555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCc
Q 043480 97 LINILLDNMDKLALEVFHKMVSKGREP-DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGK 175 (493)
Q Consensus 97 ~a~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (493)
+.|++.++++...+..| +...+..+...+...|++++|++.+++ +.+..++..++..+.+.|+
T Consensus 82 ----------~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~ 145 (291)
T 3mkr_A 82 ----------DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDR 145 (291)
T ss_dssp ----------HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTC
T ss_pred ----------HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCC
Confidence 44555555555543222 344444455556666666666666554 2344555555555555566
Q ss_pred hhHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 043480 176 VDLAYELTVGAMKGKVEFGVLIY---NALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKL 252 (493)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 252 (493)
+++|.+.++.+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...
T Consensus 146 ~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 146 LDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666655555555432 221111 111222223355555555555555442 44455555555555555555555555
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCCHHH-HHHHHHHHHHc
Q 043480 253 VMEMESCGIEPDVYSYNQLLKGLCNSNQLDK-AYMFMVKKMEA 294 (493)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 294 (493)
++++.+.. +.++.++..++..+...|+.++ +..+++++...
T Consensus 223 l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 223 LQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 55554432 2344455555555555555443 33444444444
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=3.2e-17 Score=142.13 Aligned_cols=249 Identities=11% Similarity=0.017 Sum_probs=143.8
Q ss_pred ccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 043480 172 GDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEK 251 (493)
Q Consensus 172 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 251 (493)
..|++..|+..++.+..............+..+|...|+++.|+..++.. -+|+..++..+...+...++.++|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 44555555555544433211111223334455666666666666544331 24555566666666666666666666
Q ss_pred HHHHHHHCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043480 252 LVMEMESCGIEP-DVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRG 330 (493)
Q Consensus 252 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 330 (493)
.++.+...+..| +...+..+...+...|++++|+..+.+ ..+...+..++..+.+.|++++|.+.|+.+.+..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 666666554323 344455555666666666666666655 2355566666666777777777777777766653
Q ss_pred CCcCHhHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhh
Q 043480 331 IELDVVTF---TILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVIS 407 (493)
Q Consensus 331 ~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 407 (493)
|+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++++.. +-+..+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 332111 112222233466777777777776653 5566677777777777777777777777766642 335566
Q ss_pred HHHHHHHHHhcCChhH-HHHHHHHHHHc
Q 043480 408 YNALINGLCKSSRVSE-AMHLYEEMQIR 434 (493)
Q Consensus 408 ~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 434 (493)
+..++..+...|+.++ +.++++++.+.
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 6777777777777654 45677776664
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=4.2e-17 Score=135.20 Aligned_cols=201 Identities=11% Similarity=-0.020 Sum_probs=139.7
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
+|+++..+..+...+.+.|++++|+..|+++++.+ |.++..+..+..++.+.|++++|+..|++.++.. +.+...+..
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 78 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV 78 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 58899999999999999999999999999999987 7888999999999999999999999999999875 556678888
Q ss_pred HHHHHhcc-----------CChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043480 85 FISGLCEV-----------KNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIE 153 (493)
Q Consensus 85 ll~~~~~~-----------~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (493)
+..++... |++ ++|+..+++.++. .+.+...+..+..++...|++++|++.|++..+
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~-----------~~A~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYL-----------EQALSVLKDAERV-NPRYAPLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHH-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCH-----------HHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 88888777 666 4555666666554 233556666677777777777777777777766
Q ss_pred CCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 154 NGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
.. .+...+..+..++...|++++|...|+...+.. +.+...+..+...+...|++++|...+++..
T Consensus 147 ~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 147 LE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred cc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 55 466666666666777777777777776666543 3345556666666666666666666665543
No 36
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.75 E-value=4.8e-14 Score=134.72 Aligned_cols=145 Identities=8% Similarity=0.115 Sum_probs=111.3
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC---hhHHHHHHHHhccCC-CCc
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSR---FDLVQFYYQQMHPLG-FSL 77 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~ 77 (493)
|...|.|...|..++..+.+.+.++.|+.+|+++... .|.+...|...+....+.|+ ++.+..+|++.+... .+|
T Consensus 59 l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~ 137 (679)
T 4e6h_A 59 IEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNN 137 (679)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCC
T ss_pred HHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCC
Confidence 4567899999999999999999999999999999988 48888899999999999999 999999999999874 138
Q ss_pred ChhhHHHHHHHHhccCCh----hhHHHHHHHHHHHHHHHHHHHHh-CCC-CC-CHhhHHHHHHHHhc---------cCCH
Q 043480 78 TPFTYSRFISGLCEVKNF----TLINILLDNMDKLALEVFHKMVS-KGR-EP-DVVTYTIVIDGLCK---------AKEF 141 (493)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~a~~~~~~~~~-~g~-~~-~~~~~~~l~~~~~~---------~~~~ 141 (493)
++..|...+......++. +.+. +...++|+..+. .|. .+ +...|...+..... ++++
T Consensus 138 sv~LW~~Yl~f~~~~~~~~~~~~~~r-------~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 138 DLSLWLSYITYVRKKNDIITGGEEAR-------NIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CHHHHHHHHHHHHHHSCSTTTHHHHH-------HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccchhH-------HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 888888888766665554 2333 445567776554 355 44 35688888765442 3457
Q ss_pred HHHHHHHHHHHHC
Q 043480 142 DKAVQAWEHMIEN 154 (493)
Q Consensus 142 ~~a~~~~~~~~~~ 154 (493)
+.+..+|++.+..
T Consensus 211 ~~~R~iy~raL~i 223 (679)
T 4e6h_A 211 QYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhC
Confidence 8889999998863
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.75 E-value=1.2e-15 Score=141.13 Aligned_cols=347 Identities=12% Similarity=0.023 Sum_probs=201.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh---hHHHHHHHHhccCCCCcChhhHHHHHHHHh
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRF---DLVQFYYQQMHPLGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (493)
.++..+.+.|++++|+++|+++.+.| ++..+..+...+...|+. ++|...|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 46788899999999999999998765 344566677777778888 8999999998753 5566677766454
Q ss_pred ccC-----ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHH---HHHHHHHHHHHCCCCCCHHh
Q 043480 91 EVK-----NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFD---KAVQAWEHMIENGIKPDNKA 162 (493)
Q Consensus 91 ~~~-----~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~ 162 (493)
..+ ++ ++|+..|++....|. ...+..|...|...+..+ .+.+.+......| +...
T Consensus 81 ~~~~~~~~~~-----------~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a 143 (452)
T 3e4b_A 81 AKPGATEAEH-----------HEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEA 143 (452)
T ss_dssp TC--CCHHHH-----------HHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTH
T ss_pred hCCCCCCcCH-----------HHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHH
Confidence 444 33 667788888877653 336777777777665443 3445555555443 3456
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043480 163 CAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTG---RIRRAMAIKSFMKWNGCEPDLVTYNAILNY 239 (493)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 239 (493)
...+...|...+.++.+........+.-...+...+..+...|...| +.++|++.|++....| +++...+..+...
T Consensus 144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~ 222 (452)
T 3e4b_A 144 GLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARV 222 (452)
T ss_dssp HHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
Confidence 66777777777755544443222222111223347777778888888 7888888888888777 5566655566666
Q ss_pred HHcc----CChHHHHHHHHHHHHCCCCCChhhHHHHHHH-H--HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHH
Q 043480 240 YCDE----VMLDEAEKLVMEMESCGIEPDVYSYNQLLKG-L--CNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCK 312 (493)
Q Consensus 240 ~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (493)
|... +++++|...|+... . -++..+..+... + ...+++++|...|.+..+.+ +...+..+...|.
T Consensus 223 y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 223 LGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY- 294 (452)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-
T ss_pred HhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-
Confidence 6544 67788888887776 2 344555555555 3 45677777777777777653 5556666666665
Q ss_pred cC-----CHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc-
Q 043480 313 GG-----QTRRAYKLFEGMRRRGIELDVVTFTILIKAFLR----EGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK- 382 (493)
Q Consensus 313 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 382 (493)
.| ++++|.+.|++.. .| +......+...|.. ..+.++|..+|+...+.|. + .....+...|..
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~G 367 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-N--SADFAIAQLFSQG 367 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-T--THHHHHHHHHHSC
T ss_pred cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-H--HHHHHHHHHHHhC
Confidence 34 7777777777666 32 44555555555544 3367777777777666542 2 233444444442
Q ss_pred ---cCCHhHHHHHHHHHHhCC
Q 043480 383 ---SREIGTAYGVFLDMVEQG 400 (493)
Q Consensus 383 ---~~~~~~a~~~~~~~~~~~ 400 (493)
..+..+|...|+...+.|
T Consensus 368 ~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 368 KGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTBCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHCC
Confidence 346667777776666655
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=5.9e-18 Score=161.82 Aligned_cols=138 Identities=15% Similarity=0.198 Sum_probs=114.7
Q ss_pred CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhH
Q 043480 332 ELDVVTFTILIKAFLREGSSAMAEKLLNQMRG---MNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISY 408 (493)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 408 (493)
..-..||+++|.+|++.|++++|.++|+.|.+ .|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34567899999999999999999999988764 477899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043480 409 NALINGLCKSSRV-SEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLD 474 (493)
Q Consensus 409 ~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 474 (493)
+++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++.++++ .-++.|+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 9999999999885 78889999999999999999999888766554 333444444 2255554
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.9e-15 Score=129.40 Aligned_cols=225 Identities=12% Similarity=0.045 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--C----hhhHH
Q 043480 231 VTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR--D----KVSYN 304 (493)
Q Consensus 231 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~ 304 (493)
..+..+...+...|++++|...++.+.+.. .+...+..+..++...|++++|...+.+.....+.. + ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344555555666666666666666665544 455566666666666666666666666655533221 1 45566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 043480 305 TVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSR 384 (493)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 384 (493)
.+...+...|++++|.+.|++..+.. |+. ..+...|++++|...++.+.+.. +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 67777777777777777777777652 332 34556677888888888877654 445667778888888888
Q ss_pred CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043480 385 EIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWD 464 (493)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 464 (493)
++++|...++++++.. +.+..++..+..++...|++++|...++++.+... .+...+..+..++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888888753 44677788888888888888888888888877532 257888888888888888888888888
Q ss_pred HHHHc
Q 043480 465 QMMEK 469 (493)
Q Consensus 465 ~~~~~ 469 (493)
++.+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88765
No 40
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=5.5e-18 Score=162.02 Aligned_cols=151 Identities=14% Similarity=0.173 Sum_probs=125.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 043480 299 DKVSYNTVIEAFCKGGQTRRAYKLFEGMRR---RGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTT 375 (493)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 375 (493)
-..+|+++|++|++.|++++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999988764 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCC-HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC------HHHHHHHHH
Q 043480 376 IIDCLCKSRE-IGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD------EVTFKLLIG 448 (493)
Q Consensus 376 l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~ 448 (493)
+|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. ..++.++++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999998 478999999999999999999999998765544 344444444 3344443 444455666
Q ss_pred HHHhcC
Q 043480 449 GLVQEK 454 (493)
Q Consensus 449 ~~~~~g 454 (493)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666654
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=9.7e-16 Score=126.95 Aligned_cols=199 Identities=15% Similarity=0.017 Sum_probs=130.5
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHH
Q 043480 263 PDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILI 342 (493)
Q Consensus 263 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 342 (493)
++...+..+...+.+.|++++|...|++.+...+. +...+..+...+...|++++|+..+++..+..+ .+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 44455555556666666666666666666555443 555566666666666666666666666665532 2455556666
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHH
Q 043480 343 KAFLRE-----------GSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNAL 411 (493)
Q Consensus 343 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 411 (493)
.++... |++++|...++...+.. +.+...+..+..++...|++++|...|++.++.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 88888888888888765 5567788888888888888888888888888765 577888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 412 INGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 467 (493)
..++...|++++|+..+++..+..+. +...+..+..++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888899998888888775322 67888888888888888888888887764
No 42
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.73 E-value=2.9e-13 Score=129.34 Aligned_cols=443 Identities=12% Similarity=0.066 Sum_probs=308.2
Q ss_pred ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCC---hhhHHH
Q 043480 24 LIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKN---FTLINI 100 (493)
Q Consensus 24 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~ 100 (493)
...+-+..|++.+..+ |.|...|..++..+...+.++.+..+|++++.. .+.....|...+..-.+.++ +
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~----- 119 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDA----- 119 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCH-----
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchH-----
Confidence 4556677788888877 789999999999999999999999999999886 36677788888888888877 7
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHhccCCH--------HHHHHHHHHHHH-CCC-CCC-HHhHHHHHH
Q 043480 101 LLDNMDKLALEVFHKMVSKG-REPDVVTYTIVIDGLCKAKEF--------DKAVQAWEHMIE-NGI-KPD-NKACAALVV 168 (493)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~ 168 (493)
+.+.++|++.+... .+|++..|...+....+.++. +.+.++|+..+. .|. .++ ...|...+.
T Consensus 120 ------~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~ 193 (679)
T 4e6h_A 120 ------AVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLH 193 (679)
T ss_dssp ------HHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 67788999998862 148888998888766655543 344578887664 365 554 456666655
Q ss_pred HHh---------ccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-------------cCCHHHHHHHHHHHHH--C
Q 043480 169 GLC---------GDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCR-------------TGRIRRAMAIKSFMKW--N 224 (493)
Q Consensus 169 ~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~--~ 224 (493)
... ..++++.+..+|..++......-..+|......-.. ..+++.|...+.++.. .
T Consensus 194 f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~ 273 (679)
T 4e6h_A 194 FLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITK 273 (679)
T ss_dssp HHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 433 234577889999999863222122333322111111 1223445555544322 1
Q ss_pred CC----C-----------C-----C---HHHHHHHHHHHHccC-------ChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 043480 225 GC----E-----------P-----D---LVTYNAILNYYCDEV-------MLDEAEKLVMEMESCGIEPDVYSYNQLLKG 274 (493)
Q Consensus 225 ~~----~-----------~-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (493)
++ + | + ...|...+..--..+ ..+.+..+|+++... ++..+..|...+..
T Consensus 274 ~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~ 352 (679)
T 4e6h_A 274 GLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANY 352 (679)
T ss_dssp TCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHH
T ss_pred hHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 11 1 1 0 133444444333222 123456678887764 35578888888888
Q ss_pred HHccCCHHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------CcC----------
Q 043480 275 LCNSNQLDKAY-MFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGI---------ELD---------- 334 (493)
Q Consensus 275 ~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~---------- 334 (493)
+...|+.+.|. .++.+.....+ .+...|-..+....+.|++++|.++|+.+..... .|+
T Consensus 353 ~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~ 431 (679)
T 4e6h_A 353 QGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431 (679)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence 88899998996 99999987654 3666677788888899999999999999886410 121
Q ss_pred --HhHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHcc-CCHhHHHHHHHHHHhCCCCCCHhhHHH
Q 043480 335 --VVTFTILIKAFLREGSSAMAEKLLNQMRGM-NLSPDRILYTTIIDCLCKS-REIGTAYGVFLDMVEQGITPDVISYNA 410 (493)
Q Consensus 335 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~ 410 (493)
...|...+....+.|+.+.|..+|....+. + ......|...+..-.+. ++.+.|..+|+..++. .+-+...|..
T Consensus 432 ~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~ 509 (679)
T 4e6h_A 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINK 509 (679)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHH
Confidence 235777777777889999999999999875 2 23344554444444444 4589999999999986 4556677788
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 411 LINGLCKSSRVSEAMHLYEEMQIRGAHP--DEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAI 485 (493)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 485 (493)
.+......|+.+.|..+|++.......+ ....|...++.-.+.|+.+.+.++.+++.+. .|+......+..-|
T Consensus 510 y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 510 YLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 8888888999999999999998864322 3578888888889999999999999999986 45555555555444
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=3.2e-15 Score=138.38 Aligned_cols=379 Identities=12% Similarity=0.034 Sum_probs=252.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhH
Q 043480 49 RFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTY 128 (493)
Q Consensus 49 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 128 (493)
.+...+.+.|++++|.++|++..+.| ++..+..|...+...|+.... ++|+..|++.... ++..+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~--------~~A~~~~~~A~~~----~~~A~ 72 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQI--------KQAEATYRAAADT----SPRAQ 72 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------------------CH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCH--------HHHHHHHHHHHhC----CHHHH
Confidence 36677889999999999999998765 333445555566666655211 3566677766542 56667
Q ss_pred HHHHHHHhccC-----CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhH---HHHHHHHHHhCCCCCChhhHHH
Q 043480 129 TIVIDGLCKAK-----EFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDL---AYELTVGAMKGKVEFGVLIYNA 200 (493)
Q Consensus 129 ~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~ 200 (493)
..+...+...+ ++++|+..|++..+.|. ...+..+...|...+..+. +.+.+......+ +......
T Consensus 73 ~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~ 146 (452)
T 3e4b_A 73 ARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLA 146 (452)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHH
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHH
Confidence 77777555554 78999999999998763 3377777877776665443 455555554433 4566777
Q ss_pred HHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 043480 201 LISGFCRTGRI----RRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEV---MLDEAEKLVMEMESCGIEPDVYSYNQLLK 273 (493)
Q Consensus 201 l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 273 (493)
+...|...+.+ +.+..+++... ..++..+..+...|...| +.++|...|+...+.| +++...+..+..
T Consensus 147 Lg~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~ 221 (452)
T 3e4b_A 147 QVLLYRTQGTYDQHLDDVERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVAR 221 (452)
T ss_dssp HHHHHHHHTCGGGGHHHHHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHH
Confidence 88888887754 44444554444 233347788888888899 9999999999999887 455555566777
Q ss_pred HHHcc----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHH
Q 043480 274 GLCNS----NQLDKAYMFMVKKMEAKGLRDKVSYNTVIEA-F--CKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFL 346 (493)
Q Consensus 274 ~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (493)
+|... +++++|...|.+.. . .++..+..+... + ...+++++|.+.|++..+.| +...+..+...|.
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY 294 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 77655 79999999999987 2 366677777776 4 45899999999999999876 6667777777776
Q ss_pred HcC-----CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 043480 347 REG-----SSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK----SREIGTAYGVFLDMVEQGITPDVISYNALINGLCK 417 (493)
Q Consensus 347 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 417 (493)
.| ++++|...|+... +-+...+..+...|.. ..++++|...|++..+.| +......|...|..
T Consensus 295 -~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 295 -EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQ 366 (452)
T ss_dssp -HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHS
T ss_pred -cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHh
Confidence 55 9999999999877 3456677777777766 348999999999999876 34456667776664
Q ss_pred ----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 418 ----SSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 418 ----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
..+.++|...|+...+.|.. +.......+......++..+|.++.++..+.
T Consensus 367 G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 367 GKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp CTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 46899999999999887632 2222222222233345677777777776654
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.71 E-value=2.1e-15 Score=135.10 Aligned_cols=252 Identities=10% Similarity=0.030 Sum_probs=192.5
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHHhccCCCCcChhh
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSR-FDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
...|.+..+|..+...+.+.|++++|++.|+++++.+ |.+...|+.+..++...|+ +++|+..|+++++.. +.+..+
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a 168 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQV 168 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHH
Confidence 3456677889999999999999999999999999987 7778899999999999996 999999999999875 556788
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 043480 82 YSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNK 161 (493)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (493)
|..+..++...|++ +.|+..|++++.. .+.+...|..+..++...|++++|++.|+++++... .+..
T Consensus 169 ~~~~g~~~~~~g~~-----------~eAl~~~~kal~l-dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~ 235 (382)
T 2h6f_A 169 WHHRRVLVEWLRDP-----------SQELEFIADILNQ-DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNS 235 (382)
T ss_dssp HHHHHHHHHHHTCC-----------TTHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHHHHHHccCH-----------HHHHHHHHHHHHh-CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHH
Confidence 99999999999999 5566777777775 355788899999999999999999999999998642 3678
Q ss_pred hHHHHHHHHhc-cCchhHH-----HHHHHHHHhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHH
Q 043480 162 ACAALVVGLCG-DGKVDLA-----YELTVGAMKGKVEFGVLIYNALISGFCRTG--RIRRAMAIKSFMKWNGCEPDLVTY 233 (493)
Q Consensus 162 ~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~ 233 (493)
+|..+..++.. .|..++| +..+++.+... +-+...|+.+...+...| ++++|++.+.++ +. .+.+...+
T Consensus 236 a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al 312 (382)
T 2h6f_A 236 VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLI 312 (382)
T ss_dssp HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHH
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHH
Confidence 88888888888 5665777 47777777654 445677777777777777 577888877777 33 25566677
Q ss_pred HHHHHHHHccC---------ChHHHHHHHHHH-HHCCCCCChhhHHHHHH
Q 043480 234 NAILNYYCDEV---------MLDEAEKLVMEM-ESCGIEPDVYSYNQLLK 273 (493)
Q Consensus 234 ~~ll~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~ 273 (493)
..+...|.+.| ..++|..+++.+ .+.. +.....|..+..
T Consensus 313 ~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~ 361 (382)
T 2h6f_A 313 AFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGR 361 (382)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 77777777653 247788888777 4432 222334444443
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.4e-15 Score=127.07 Aligned_cols=225 Identities=12% Similarity=0.038 Sum_probs=158.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC--CCC----hhhHH
Q 043480 196 LIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGI--EPD----VYSYN 269 (493)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 269 (493)
..+..+...+...|++++|...|+++.+.. .+...+..+...+...|++++|...++.+.+... .++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555666666666666666666666554 5555666666666666666666666666554320 111 35666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcC
Q 043480 270 QLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREG 349 (493)
Q Consensus 270 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 349 (493)
.+...+...|++++|...+.+.....+. ...+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch---------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 6777777777777777777777765332 234555677888888888877653 235566777888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 043480 350 SSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYE 429 (493)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (493)
++++|...++.+.+.. +.+...+..+...+...|++++|...++++++.. +.+...+..+..++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888887755 5567888888888888899999999888888753 4457778888888888999999998888
Q ss_pred HHHHc
Q 043480 430 EMQIR 434 (493)
Q Consensus 430 ~~~~~ 434 (493)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88664
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=6.2e-14 Score=120.97 Aligned_cols=227 Identities=11% Similarity=-0.047 Sum_probs=174.6
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHhccCCCCcChh
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIR----HSRFDLVQFYYQQMHPLGFSLTPF 80 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 80 (493)
.|.++.++..+...|...|++++|++.|+++.+. .+...+..+...+.. .+++++|...|++..+.+ ++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 75 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 75 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH
Confidence 4677888899999999999999999999999883 345678888888998 999999999999998864 667
Q ss_pred hHHHHHHHHhc----cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHH
Q 043480 81 TYSRFISGLCE----VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCK----AKEFDKAVQAWEHMI 152 (493)
Q Consensus 81 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 152 (493)
.+..+...+.. .+++ ++|+..|++....+ +..++..+...|.. .+++++|++.|++..
T Consensus 76 a~~~lg~~~~~g~~~~~~~-----------~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNT-----------NKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCH-----------HHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCH-----------HHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 78888888888 8888 56667777776653 67788888888888 888999999998888
Q ss_pred HCCCCCCHHhHHHHHHHHhc----cCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 043480 153 ENGIKPDNKACAALVVGLCG----DGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCR----TGRIRRAMAIKSFMKWN 224 (493)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 224 (493)
+.+ +..++..+...+.. .+++++|...|+...+.+ +...+..+...|.. .+++++|...|++..+.
T Consensus 142 ~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 142 DLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred hcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 765 55667777777776 788888888888877753 45666677777777 77888888888777766
Q ss_pred CCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHCC
Q 043480 225 GCEPDLVTYNAILNYYCD----EVMLDEAEKLVMEMESCG 260 (493)
Q Consensus 225 ~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 260 (493)
+ +...+..+...|.. .+++++|...++...+.+
T Consensus 216 ~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 216 E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 4 25556666666766 777777777777776654
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.69 E-value=7.6e-15 Score=122.70 Aligned_cols=208 Identities=11% Similarity=-0.054 Sum_probs=153.7
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhH
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTY 82 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (493)
+..|.++.++..++..+...|++++|++.|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 79 (225)
T 2vq2_A 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEIN 79 (225)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHH
Confidence 4567788899999999999999999999999998875 6677888888999999999999999999988764 4566778
Q ss_pred HHHHHHHhcc-CChhhHHHHHHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 043480 83 SRFISGLCEV-KNFTLINILLDNMDKLALEVFHKMVSKGREP-DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN 160 (493)
Q Consensus 83 ~~ll~~~~~~-~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 160 (493)
..+..++... |++ +.|...++++...+..| +...+..+...+...|++++|++.|+++.+.. +.+.
T Consensus 80 ~~l~~~~~~~~~~~-----------~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 147 (225)
T 2vq2_A 80 NNYGWFLCGRLNRP-----------AESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFP 147 (225)
T ss_dssp HHHHHHHHTTTCCH-----------HHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHHHhcCcH-----------HHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCc
Confidence 8888888888 888 55666666666532222 35677778888888888888888888887653 2246
Q ss_pred HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043480 161 KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWN 224 (493)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (493)
..+..+...+...|++++|...++.+.......+...+..+...+...|+.+.+..+++.+...
T Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 148 PAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 6667777777777777777777777665431145555666666666777777777777666543
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.69 E-value=9.3e-15 Score=124.58 Aligned_cols=201 Identities=11% Similarity=-0.051 Sum_probs=112.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISG 88 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 88 (493)
+.++..++..+...|++++|++.|+++.+.+ +.+...+..+..++...|++++|...++++.+.. +.+...+..+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556666666666666666666666666654 4455566666666666666666666666665543 3345555566666
Q ss_pred HhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 043480 89 LCEVKNFTLINILLDNMDKLALEVFHKMVSKGREP-DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALV 167 (493)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 167 (493)
+...|++ +.|++.++++...+..| +...+..+...+...|++++|.+.|++..+.. +.+..++..+.
T Consensus 115 ~~~~g~~-----------~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la 182 (252)
T 2ho1_A 115 LYEQKRY-----------EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMA 182 (252)
T ss_dssp HHHTTCH-----------HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred HHHHhHH-----------HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 6666666 44445555554421222 34455555566666666666666666655542 12344555555
Q ss_pred HHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043480 168 VGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWN 224 (493)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (493)
..+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 55555555555555555555432 233444445555555555555555555555443
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=1.4e-14 Score=125.01 Aligned_cols=229 Identities=12% Similarity=0.089 Sum_probs=113.5
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHHcC
Q 043480 237 LNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRD--KVSYNTVIEAFCKGG 314 (493)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~ 314 (493)
...+...|++++|...++.+.+.. +.+...+..+..++...|++++|+..+.+.......++ ...|..+...+...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 334444444555555444444432 12233444444455555555555555555444211111 112445555555555
Q ss_pred CHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHH
Q 043480 315 QTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFL 394 (493)
Q Consensus 315 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 394 (493)
++++|.+.|++..+... .+...+..+...+...|++++|...++...+.. +.+...+..+...+...+++++|...++
T Consensus 89 ~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554422 234455555555566666666666665555443 3444455555522222346666666666
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCC---hhHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 043480 395 DMVEQGITPDVISYNALINGLCKSSR---VSEAMHLYEEMQIRG-AHPD------EVTFKLLIGGLVQEKKLELACRLWD 464 (493)
Q Consensus 395 ~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~ 464 (493)
++++.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..+...|...|++++|.+.++
T Consensus 167 ~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 167 KVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 665542 2234455555555555555 555666665554321 0122 2455556666666666666666666
Q ss_pred HHHHc
Q 043480 465 QMMEK 469 (493)
Q Consensus 465 ~~~~~ 469 (493)
++++.
T Consensus 246 ~al~~ 250 (272)
T 3u4t_A 246 NILAL 250 (272)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=5.1e-15 Score=127.82 Aligned_cols=234 Identities=14% Similarity=0.018 Sum_probs=146.7
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChh----hHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPF----TYS 83 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~ 83 (493)
|+.++...+..+...|++++|++.|+++.+.+ |.+...+..+..++...|++++|+..++++.+.+ +++. +|.
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~ 78 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFE 78 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHH
Confidence 45566778888999999999999999998876 5667788888889999999999999999988742 3332 367
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhH
Q 043480 84 RFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKAC 163 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 163 (493)
.+..++...|++ +.|+..|++.... .+.+..++..+...|...|++++|++.|++..+.. +.+..++
T Consensus 79 ~lg~~~~~~~~~-----------~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~ 145 (272)
T 3u4t_A 79 YYGKILMKKGQD-----------SLAIQQYQAAVDR-DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVF 145 (272)
T ss_dssp HHHHHHHHTTCH-----------HHHHHHHHHHHHH-STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHH
T ss_pred HHHHHHHHcccH-----------HHHHHHHHHHHhc-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHH
Confidence 777888888888 5555666666554 23455677777778888888888888887777652 2244555
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHH
Q 043480 164 AALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGR---IRRAMAIKSFMKWNG-CEPD------LVTY 233 (493)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~ 233 (493)
..+...+...+++++|.+.|+.+.+.. +.+...+..+...+...++ +++|...+++..+.. -.|+ ...+
T Consensus 146 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 224 (272)
T 3u4t_A 146 YELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN 224 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 555523333346666666666666543 2234445555555555554 444555555444321 0111 1234
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHH
Q 043480 234 NAILNYYCDEVMLDEAEKLVMEMES 258 (493)
Q Consensus 234 ~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (493)
..+...|...|++++|...++++.+
T Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 225 EYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444455555555555555444
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=3.5e-13 Score=116.21 Aligned_cols=221 Identities=11% Similarity=-0.004 Sum_probs=111.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 043480 232 TYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCN----SNQLDKAYMFMVKKMEAKGLRDKVSYNTVI 307 (493)
Q Consensus 232 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 307 (493)
.+..+...+...|++++|...|+...+ +.+...+..+...|.. .+++++|...|.+....+ +...+..+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 333444444444444444444444444 1223334444444444 445555555554444432 344444444
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 043480 308 EAFCK----GGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLR----EGSSAMAEKLLNQMRGMNLSPDRILYTTIIDC 379 (493)
Q Consensus 308 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (493)
..|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 45554 555555555555555442 34445555555555 555555555555555433 33444445555
Q ss_pred HHc----cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043480 380 LCK----SREIGTAYGVFLDMVEQGITPDVISYNALINGLCK----SSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 380 ~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 451 (493)
|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+...|.
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 544 555666666666555542 33445555555555 566666666666655532 2445555555555
Q ss_pred h----cCCHHHHHHHHHHHHHcC
Q 043480 452 Q----EKKLELACRLWDQMMEKG 470 (493)
Q Consensus 452 ~----~g~~~~a~~~~~~~~~~~ 470 (493)
. .+++++|.+.+++..+.|
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHHcC
Confidence 5 566666666666665543
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=3.6e-15 Score=126.35 Aligned_cols=202 Identities=14% Similarity=0.100 Sum_probs=113.6
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
..+..|..++..+...|++++|+..|+++.+.+ +.+...+..++..+...|++++|+..++++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345566677777777777777777777777764 5566677777777777777777777777776653 34556666667
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAAL 166 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (493)
.++...|++ +.|++.++++.+. .+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+
T Consensus 99 ~~~~~~~~~-----------~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 165 (243)
T 2q7f_A 99 NVYVVKEMY-----------KEAKDMFEKALRA-GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQF 165 (243)
T ss_dssp HHHHHTTCH-----------HHHHHHHHHHHHH-TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHhccH-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 777777777 4445555555544 23355666666677777777777777777766542 2245555666
Q ss_pred HHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043480 167 VVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWN 224 (493)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (493)
...+...|++++|...++.+.... +.+..++..+...|...|++++|...++++.+.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666666666666666655543 234445555555666666666666666655544
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.66 E-value=1e-13 Score=118.10 Aligned_cols=199 Identities=12% Similarity=0.009 Sum_probs=120.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHH
Q 043480 267 SYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFL 346 (493)
Q Consensus 267 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (493)
.+..+...+...|++++|...+.++....+. +...+..+...+...|++++|.+.++++.+... .+...+..+...+.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHH
Confidence 3444444555555555555555555544322 444555555566666666666666666555432 24555666666666
Q ss_pred HcCCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 043480 347 REGSSAMAEKLLNQMRGMNL-SPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAM 425 (493)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 425 (493)
..|++++|...++.+.+.+. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666665211 2244556666666777777777777777766542 234566667777777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 426 HLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 426 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
..++++.+... .+...+..+...+...|++++|.+.++++.+.
T Consensus 196 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 196 QYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777765422 25666667777777777777777777777664
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=1.1e-13 Score=115.62 Aligned_cols=212 Identities=9% Similarity=-0.039 Sum_probs=142.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHH
Q 043480 265 VYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKA 344 (493)
Q Consensus 265 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (493)
...+..+...+...|++++|...+.++....+. +...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 445555666666666666666666666665432 45566666677777777777777777776653 2355666777777
Q ss_pred HHHc-CCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChh
Q 043480 345 FLRE-GSSAMAEKLLNQMRGMNLSP-DRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVS 422 (493)
Q Consensus 345 ~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 422 (493)
+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+..++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 7777 77777777777777622122 35667777777777888888888888777652 334667777777888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043480 423 EAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAAL 481 (493)
Q Consensus 423 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 481 (493)
+|...++++.+.....+...+..+...+...|+.+.|..+++.+.+. .|+......+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~ 221 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 88888888766533135666777777777888888888888877654 3544444333
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=1.1e-14 Score=125.81 Aligned_cols=245 Identities=10% Similarity=-0.064 Sum_probs=129.8
Q ss_pred CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHH
Q 043480 209 GRIRRAMAIKSFMKWNGC---EPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAY 285 (493)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 285 (493)
|++++|+..++++.+... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 445555555555554321 1123444555555555555555555555555432 234455555555666666666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 043480 286 MFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN 365 (493)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 365 (493)
..+.++....+. +...+..+...+...|++++|...++++.+.. |+.......+..+...|++++|...++......
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 666665554332 44555666666666666666666666666542 232233333334455566667766665555432
Q ss_pred CCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCC---CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 043480 366 LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGIT---PDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVT 442 (493)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 442 (493)
+++...+ .++..+...++.++|...+.+..+.... .+...+..+..+|...|++++|...|+++.+. .|+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN-- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--
Confidence 2333333 3455555666666666666666543110 01356666777777777777777777777664 2321
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 043480 443 FKLLIGGLVQEKKLELACRLW 463 (493)
Q Consensus 443 ~~~l~~~~~~~g~~~~a~~~~ 463 (493)
+.....++...|++++|.+.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 222344556666666666554
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=6.7e-15 Score=127.29 Aligned_cols=249 Identities=10% Similarity=-0.061 Sum_probs=157.9
Q ss_pred HHHcCChhHHHHHHHHHhhCCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCCh
Q 043480 19 LVKAGLIDQAVHVFDEMTQSNC---RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNF 95 (493)
Q Consensus 19 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 95 (493)
+...|++++|++.|+++.+... +.+..+|..++..+...|++++|...|+++.+.. +.+..++..+..++...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 3445788888888888887531 2345677778888888888888888888888764 45677788888888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCc
Q 043480 96 TLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGK 175 (493)
Q Consensus 96 ~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (493)
+.|+..|++.... .+.+..++..+...+...|++++|.+.|+++.+. .|+.......+..+...|+
T Consensus 94 -----------~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~ 159 (275)
T 1xnf_A 94 -----------DAAYEAFDSVLEL-DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLD 159 (275)
T ss_dssp -----------HHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHC
T ss_pred -----------HHHHHHHHHHHhc-CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcC
Confidence 5555666666654 3345677888888888888888888888888775 3444444444444456677
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCChHHHHHH
Q 043480 176 VDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCE---PDLVTYNAILNYYCDEVMLDEAEKL 252 (493)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~ 252 (493)
+++|...+....... +++...+ .++..+...++.++|...+++....... .+...+..+...+...|++++|...
T Consensus 160 ~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 237 (275)
T 1xnf_A 160 EKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237 (275)
T ss_dssp HHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777776666543 2233333 3555666666777777777766543210 0134555666666666666666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 043480 253 VMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFM 288 (493)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 288 (493)
++.+.+.. |+. +.....++...|++++|+..+
T Consensus 238 ~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 238 FKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 66666532 221 122233444455555554443
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=1.8e-13 Score=122.64 Aligned_cols=227 Identities=8% Similarity=0.027 Sum_probs=107.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 043480 233 YNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQ-LDKAYMFMVKKMEAKGLRDKVSYNTVIEAFC 311 (493)
Q Consensus 233 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (493)
|..+...+...|++++|+..++.+.+.. +.+...|..+..++...|+ +++|+..|.+++...+. +...|..+..++.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 3333344444444444444444444432 2233444444444444443 55555555555444332 4444555555555
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc-cCCHhHH-
Q 043480 312 KGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK-SREIGTA- 389 (493)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a- 389 (493)
..|++++|+..|+++.+.... +...|..+..++...|++++|+..++.+.+.. +.+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence 555555555555555544222 44445555555555555555555555555443 3344555555555554 3333444
Q ss_pred ----HHHHHHHHhCCCCCCHhhHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--------C
Q 043480 390 ----YGVFLDMVEQGITPDVISYNALINGLCKSS--RVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEK--------K 455 (493)
Q Consensus 390 ----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------~ 455 (493)
+..+++.++.. +-+...|..+...+...| ++++|++.++++ +. -..+...+..++.+|.+.| +
T Consensus 256 ~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 256 LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 34555555431 223445555555555544 455555555554 21 1114555555555555542 1
Q ss_pred -HHHHHHHHHHH
Q 043480 456 -LELACRLWDQM 466 (493)
Q Consensus 456 -~~~a~~~~~~~ 466 (493)
+++|.++++++
T Consensus 333 ~~~~A~~~~~~l 344 (382)
T 2h6f_A 333 ILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 35555555555
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=4.5e-14 Score=119.54 Aligned_cols=192 Identities=15% Similarity=0.146 Sum_probs=70.6
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH
Q 043480 237 LNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQT 316 (493)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 316 (493)
...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+.++....+. +...+..+...+...|++
T Consensus 30 a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 107 (243)
T 2q7f_A 30 MGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYVVKEMY 107 (243)
T ss_dssp ------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHhccH
Confidence 333334444444444444443321 122333333334444444444444444443333221 333333344444444444
Q ss_pred HHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHH
Q 043480 317 RRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDM 396 (493)
Q Consensus 317 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 396 (493)
++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++
T Consensus 108 ~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 108 KEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444443332 1133333344444444444444444444443322 223333444444444444444444444444
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 397 VEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 397 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
.+.. +.+..++..+..++...|++++|...++++.+
T Consensus 186 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 186 TEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 3321 12233344444444444444444444444433
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=1.2e-14 Score=133.51 Aligned_cols=246 Identities=13% Similarity=0.021 Sum_probs=158.2
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHhccC----CCC
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF----SIDYNRFIGVLIRHSRFDLVQFYYQQMHPL----GFS 76 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~ 76 (493)
.+.....+......+...|++++|+..|+++.+.+ +.+ ...|..+...+...|++++|...++++... +..
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 34556677888999999999999999999999875 444 356888889999999999999999987653 111
Q ss_pred -cChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC---------------
Q 043480 77 -LTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKE--------------- 140 (493)
Q Consensus 77 -~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~--------------- 140 (493)
....++..+...+...|+++.|...++ +++++...... ......++..+...|...|+
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~----~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 157 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQ----RHLDISRELND--KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE 157 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHHHHhccc--ccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence 224577888899999999987776663 33333333310 11124578888889999999
Q ss_pred -----HHHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHhccCchhHHHHHHHHHHhCCC-----CCChhhHHHHHHHH
Q 043480 141 -----FDKAVQAWEHMIEN----GIKP-DNKACAALVVGLCGDGKVDLAYELTVGAMKGKV-----EFGVLIYNALISGF 205 (493)
Q Consensus 141 -----~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~ 205 (493)
+++|++.+++.... +..| ...++..+...+...|++++|...+++..+... .....++..+...|
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 88888888776542 1111 124566666677777777777777766654210 00122555566666
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHHHHH
Q 043480 206 CRTGRIRRAMAIKSFMKWNGC-EPD----LVTYNAILNYYCDEVMLDEAEKLVMEME 257 (493)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 257 (493)
...|++++|...+++...... .++ ..++..+...+...|++++|...++...
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 666666666666665543210 001 2344445555555555555555555543
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=1.2e-14 Score=133.66 Aligned_cols=244 Identities=13% Similarity=0.027 Sum_probs=155.1
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHhccC----C-CCc
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS----IDYNRFIGVLIRHSRFDLVQFYYQQMHPL----G-FSL 77 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~ 77 (493)
.....+..+...+...|++++|+..|+++.+.+ +.+. ..|..+...+...|++++|...++++++. + .+.
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 344556678889999999999999999999875 4444 46888899999999999999999988764 1 123
Q ss_pred ChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC-----------------
Q 043480 78 TPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKE----------------- 140 (493)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----------------- 140 (493)
...++..+...+...|+++.|...+++ +++++..... .+....++..+...|...|+
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~----al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCER----HLTLARQLGD--RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH----HHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHH----HHHHHHHhhc--hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 456788888999999999888777643 3344433310 12235578888899999999
Q ss_pred HHHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCC-----CChhhHHHHHHHHHhcCC
Q 043480 141 FDKAVQAWEHMIEN----GIKP-DNKACAALVVGLCGDGKVDLAYELTVGAMKGKVE-----FGVLIYNALISGFCRTGR 210 (493)
Q Consensus 141 ~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~ 210 (493)
+++|++.+++..+. +..+ ...++..+...+...|++++|...+++..+.... ....++..+...|...|+
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 88888888776542 1111 1235566666667777777777776666542100 011245555556666666
Q ss_pred HHHHHHHHHHHHHCCC---C--CCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 043480 211 IRRAMAIKSFMKWNGC---E--PDLVTYNAILNYYCDEVMLDEAEKLVMEME 257 (493)
Q Consensus 211 ~~~a~~~~~~~~~~~~---~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 257 (493)
+++|...+++...... . ....++..+...+...|++++|...+++..
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666555543210 0 012334444444555555555555554443
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=5.8e-14 Score=128.84 Aligned_cols=121 Identities=13% Similarity=-0.018 Sum_probs=66.7
Q ss_pred CHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-C
Q 043480 159 DNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFG----VLIYNALISGFCRTGRIRRAMAIKSFMKWN----GCEP-D 229 (493)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 229 (493)
....+......+...|++++|...|+++.+.. +.+ ..++..+...+...|++++|...+++.... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 44455566666677777777777777766643 112 245566666677777777777776665432 1111 1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHccCC
Q 043480 230 LVTYNAILNYYCDEVMLDEAEKLVMEMESCGI-EPD----VYSYNQLLKGLCNSNQ 280 (493)
Q Consensus 230 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~ 280 (493)
...+..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 33455555666666666666666666543210 011 2244455555555555
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=1.2e-13 Score=111.40 Aligned_cols=169 Identities=14% Similarity=0.083 Sum_probs=137.2
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
+.++.+|..+...|.+.|++++|++.|+++++.+ |.++.+|..+..++.+.|++++|...+....... +.+...+..+
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 79 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYIL 79 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHH
Confidence 5678899999999999999999999999999987 7788889999999999999999999999987764 4556677777
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 043480 86 ISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAA 165 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (493)
...+...+++ +.+...+.+.... .+.+...+..+...+.+.|++++|++.|++..+.. +.+..++..
T Consensus 80 ~~~~~~~~~~-----------~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~ 146 (184)
T 3vtx_A 80 GSANFMIDEK-----------QAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQS 146 (184)
T ss_dssp HHHHHHTTCH-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHcCCH-----------HHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHH
Confidence 7888888888 5555666666654 34567788888888999999999999999888763 335677788
Q ss_pred HHHHHhccCchhHHHHHHHHHHhC
Q 043480 166 LVVGLCGDGKVDLAYELTVGAMKG 189 (493)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~ 189 (493)
+..++...|++++|.+.|++.++.
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhC
Confidence 888888888888888888887764
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.58 E-value=4e-14 Score=126.22 Aligned_cols=207 Identities=14% Similarity=0.035 Sum_probs=134.7
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHhccC----CC-CcC
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF----SIDYNRFIGVLIRHSRFDLVQFYYQQMHPL----GF-SLT 78 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~ 78 (493)
+...+......+...|++++|+..|+++.+.+ +.+ ...+..+...+...|++++|...+++.... +. +..
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 34456677889999999999999999999875 444 356788889999999999999999987653 11 123
Q ss_pred hhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHhccCC-----------------
Q 043480 79 PFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGRE-PDVVTYTIVIDGLCKAKE----------------- 140 (493)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~~~----------------- 140 (493)
..++..+...+...|+++.|...+++ ++++.... +.+ ....++..+...+...|+
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~----al~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQR----HLDISREL---NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH----HHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH----HHHHHHHh---cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 56778888999999999777765533 33333222 111 124477888888999999
Q ss_pred ---HHHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHhccCchhHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHh
Q 043480 141 ---FDKAVQAWEHMIEN----GIKP-DNKACAALVVGLCGDGKVDLAYELTVGAMKGKV-----EFGVLIYNALISGFCR 207 (493)
Q Consensus 141 ---~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~ 207 (493)
+++|.+.+++.... +..+ ...++..+...+...|++++|...+++..+... .....++..+...+..
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 235 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 88888888776532 1111 123455566666666777777666666553210 0011244455555555
Q ss_pred cCCHHHHHHHHHHHH
Q 043480 208 TGRIRRAMAIKSFMK 222 (493)
Q Consensus 208 ~~~~~~a~~~~~~~~ 222 (493)
.|++++|...+++..
T Consensus 236 ~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 236 LGEFETASEYYKKTL 250 (338)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555543
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=4.7e-14 Score=129.71 Aligned_cols=203 Identities=12% Similarity=0.029 Sum_probs=126.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHHcCC-----------------HHHHHHHHH
Q 043480 267 SYNQLLKGLCNSNQLDKAYMFMVKKMEAKG-----LRDKVSYNTVIEAFCKGGQ-----------------TRRAYKLFE 324 (493)
Q Consensus 267 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 324 (493)
.+..+...|...|++++|...+.+...... ......+..+...+...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 334444444455555555554444433210 0122345555555556666 666666665
Q ss_pred HHHHc----CC-CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHhHHHHHHHHHccCCHhHHHHHHH
Q 043480 325 GMRRR----GI-ELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNL-SPD----RILYTTIIDCLCKSREIGTAYGVFL 394 (493)
Q Consensus 325 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 394 (493)
+..+. +. ......+..+...+...|++++|...+++..+... .++ ...+..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 54331 11 11234666777778888888888888877764210 011 2367778888888899999988888
Q ss_pred HHHhCCC--C---CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043480 395 DMVEQGI--T---PDVISYNALINGLCKSSRVSEAMHLYEEMQIR----GAHP-DEVTFKLLIGGLVQEKKLELACRLWD 464 (493)
Q Consensus 395 ~~~~~~~--~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 464 (493)
+..+... . ....++..+...+...|++++|...+++.... +..+ ...++..+..+|...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8775310 0 11456777888888999999999998887542 1111 24577788889999999999999999
Q ss_pred HHHHc
Q 043480 465 QMMEK 469 (493)
Q Consensus 465 ~~~~~ 469 (493)
++.+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88865
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=1.6e-12 Score=114.15 Aligned_cols=237 Identities=8% Similarity=0.004 Sum_probs=127.8
Q ss_pred CcchhhHHHHHHHHHHc----CCh----hHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-------cCCh-------hHH
Q 043480 6 GAQRLIYRAQISNLVKA----GLI----DQAVHVFDEMTQSNCRVFSIDYNRFIGVLIR-------HSRF-------DLV 63 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a 63 (493)
+.+...|...+..-.+. ++. ++|+.+|++++... |.++..|..++..+.. .|++ ++|
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A 83 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 83 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHH
Confidence 34556677777765443 233 67788888888765 6777788887777653 4665 677
Q ss_pred HHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCC-Hh-hHHHHHHHHhccCCH
Q 043480 64 QFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPD-VV-TYTIVIDGLCKAKEF 141 (493)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~-~~-~~~~l~~~~~~~~~~ 141 (493)
..+|++.++.-.+.+...|..++..+...|++ +.|..+|++.++. +|+ .. .|..++..+.+.|++
T Consensus 84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~-----------~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~ 150 (308)
T 2ond_A 84 ANIYERAISTLLKKNMLLYFAYADYEESRMKY-----------EKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGI 150 (308)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH-----------HHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCH
Confidence 77777776621133445666666666666666 4555666666553 332 32 566666666666667
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHh-ccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043480 142 DKAVQAWEHMIENGIKPDNKACAALVVGLC-GDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSF 220 (493)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 220 (493)
++|..+|++..+.. +++...+........ ..|+.+.|..+|+..++.. +.+...|..++..+.+.|+.++|..+|++
T Consensus 151 ~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 151 KSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp HHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77766666666542 122223322222211 2355555555555554432 22344444445555555555555555555
Q ss_pred HHHCC-CCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 043480 221 MKWNG-CEP--DLVTYNAILNYYCDEVMLDEAEKLVMEMES 258 (493)
Q Consensus 221 ~~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (493)
..... ++| ....|..++......|+.+.|..+++++.+
T Consensus 229 al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 229 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54431 222 233444444444444555555555444443
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=4.9e-12 Score=110.95 Aligned_cols=183 Identities=11% Similarity=0.040 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-Hh-HHHHHHHHHHHcCCHHHHHHHHH
Q 043480 282 DKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELD-VV-TFTILIKAFLREGSSAMAEKLLN 359 (493)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~ 359 (493)
++|...|++.+..-.+.+...|..++..+...|++++|.++|++..+. .|+ .. .|..++..+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 444444444444211123334444444444445555555555554443 121 21 44444444444555555555555
Q ss_pred HHHhCCCCCCHHhHHHHHHHHH-ccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CC
Q 043480 360 QMRGMNLSPDRILYTTIIDCLC-KSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRG-AH 437 (493)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~ 437 (493)
+..+.. +++...|........ ..|++++|..+|++.++.. +-+...|..++..+...|++++|..+|++..... +.
T Consensus 159 ~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 554432 222233322222211 1355555555555554431 2234444555555555555555555555554431 22
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 438 P--DEVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 438 p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
| +...|..++..+.+.|+.+.|..+++++.+
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 244455555555555555555555555544
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=3.5e-14 Score=125.14 Aligned_cols=181 Identities=12% Similarity=0.061 Sum_probs=137.1
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhC-------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC---
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQS-------NCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL--- 73 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 73 (493)
..|.+..++..++..|...|++++|+.+|+++.+. +.+.....+..+...+...|++++|...+++++..
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35667788999999999999999999999998873 33555677888999999999999999999998764
Q ss_pred ---C-CCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 043480 74 ---G-FSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWE 149 (493)
Q Consensus 74 ---~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 149 (493)
+ .+....++..+...+...|+++.|...++ ++++..+.......+.....+..+...+...|++++|++.|+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~----~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK----RALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH----HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHH----HHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 13345678889999999999987776664 334444433222223345678888999999999999999999
Q ss_pred HHHHC------CCCC-CHHhHHHHHHHHhccCchhHHHHHHHHHHh
Q 043480 150 HMIEN------GIKP-DNKACAALVVGLCGDGKVDLAYELTVGAMK 188 (493)
Q Consensus 150 ~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (493)
+..+. +..| ...++..+...+...|++++|...++++.+
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 98764 1122 235667777788888888888888877764
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=1.3e-13 Score=122.87 Aligned_cols=266 Identities=14% Similarity=0.053 Sum_probs=156.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCC-CChhhHHHHHH
Q 043480 203 SGFCRTGRIRRAMAIKSFMKWNGCEPD----LVTYNAILNYYCDEVMLDEAEKLVMEMESC----GIE-PDVYSYNQLLK 273 (493)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~ 273 (493)
..+...|++++|...++++.+.. +.+ ...+..+...+...|++++|...++...+. +.. .....+..+..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 33444444444444444444332 111 123334444444455555555444443221 100 11233444555
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH
Q 043480 274 GLCNSNQLDKAYMFMVKKMEAKGL-RD----KVSYNTVIEAFCKGGQ--------------------TRRAYKLFEGMRR 328 (493)
Q Consensus 274 ~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~ 328 (493)
.+...|++++|...+.+....... .+ ..++..+...+...|+ +++|.+.+++...
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 555555555555555554432111 11 2245555566666666 6666666665543
Q ss_pred c----CC-CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----C-CCCHHhHHHHHHHHHccCCHhHHHHHHHHHHh
Q 043480 329 R----GI-ELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN----L-SPDRILYTTIIDCLCKSREIGTAYGVFLDMVE 398 (493)
Q Consensus 329 ~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 398 (493)
. +. ......+..+...+...|++++|...++...+.. . .....++..+...+...|++++|...+++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 11 1123456777778888889888888888776421 0 11123777888888899999999999988774
Q ss_pred C----CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 399 Q----GITP-DVISYNALINGLCKSSRVSEAMHLYEEMQIR----GAHP-DEVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 399 ~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
. +..+ ...++..+...+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...++++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3 1111 1456778888899999999999999887542 1111 255778889999999999999999999987
Q ss_pred c
Q 043480 469 K 469 (493)
Q Consensus 469 ~ 469 (493)
.
T Consensus 332 ~ 332 (338)
T 3ro2_A 332 I 332 (338)
T ss_dssp C
T ss_pred H
Confidence 5
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=2.1e-12 Score=104.03 Aligned_cols=167 Identities=13% Similarity=0.066 Sum_probs=110.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 043480 299 DKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIID 378 (493)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 378 (493)
+...|..+...+...|++++|++.|++..+..+. +...+..+..++...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4455666666666667777777777766665322 55666666667777777777777776666544 445556666666
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043480 379 CLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLEL 458 (493)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 458 (493)
.+...++++.|...+.+..+.. +.+...+..+..++...|++++|++.|++..+..+. +..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 6677777777777777766542 334566667777777777777777777777664322 56777777777777777777
Q ss_pred HHHHHHHHHHc
Q 043480 459 ACRLWDQMMEK 469 (493)
Q Consensus 459 a~~~~~~~~~~ 469 (493)
|.+.++++++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777777653
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.54 E-value=1.3e-12 Score=118.63 Aligned_cols=230 Identities=12% Similarity=-0.061 Sum_probs=149.4
Q ss_pred HHHHHccCChHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC------ChhhHHH
Q 043480 237 LNYYCDEVMLDEAEKLVMEMESC----GIEP-DVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR------DKVSYNT 305 (493)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~ 305 (493)
...+...|++++|...+++..+. +.++ ...++..+...|...|+++.|...+.+........ ...+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34455566666666666666542 1011 12455566666666777777777666665532111 1235666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC----C-cCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHhHHH
Q 043480 306 VIEAFCKGGQTRRAYKLFEGMRRRGI----E-LDVVTFTILIKAFLREGSSAMAEKLLNQMRGM----NL-SPDRILYTT 375 (493)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 375 (493)
+...|...|++++|.+.+++..+... . ....++..+...|...|++++|...+++..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 77777778888888887777654311 0 11236777888888888888888888877651 22 334567788
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhC----CCCCCHhhHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 043480 376 IIDCLCKSREIGTAYGVFLDMVEQ----GITPDVISYNALINGLCKSSR---VSEAMHLYEEMQIRGAHP-DEVTFKLLI 447 (493)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~~~l~ 447 (493)
+...+...|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++. +..| ....+..+.
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 888888888988888888887643 111112335667777788888 66777777665 2223 355677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 043480 448 GGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
..|...|++++|...++++.+.
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 8999999999999999888764
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=3.2e-12 Score=116.15 Aligned_cols=294 Identities=6% Similarity=-0.108 Sum_probs=206.5
Q ss_pred HhccCCHHHHHHHHHHHHHC--CCCCCH--HhHHHHHHH--HhccCchhHHH-----------HHHHHHHhCCCCCChhh
Q 043480 135 LCKAKEFDKAVQAWEHMIEN--GIKPDN--KACAALVVG--LCGDGKVDLAY-----------ELTVGAMKGKVEFGVLI 197 (493)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 197 (493)
+.+.+++++|..+++++.+. .+..|. ..|..++.. ....+.++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 45689999999999988653 232333 333333322 12233344444 6666654321 11111
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC--CC--
Q 043480 198 ------YNALISGFCRTGRIRRAMAIKSFMKWN----GCEP-DLVTYNAILNYYCDEVMLDEAEKLVMEMESCG--IE-- 262 (493)
Q Consensus 198 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~-- 262 (493)
+......+...|++++|...+++.... +-.+ ...++..+...+...|++++|...+++..+.. ..
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222556778899999999999998764 1111 24578888899999999999999999876431 11
Q ss_pred --CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-C----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC
Q 043480 263 --PDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR-D----KVSYNTVIEAFCKGGQTRRAYKLFEGMRRR----GI 331 (493)
Q Consensus 263 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 331 (493)
....++..+...|...|++++|...+.+........ + ..++..+...|...|++++|.+.+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 123467788899999999999999999887642211 1 236888999999999999999999998762 23
Q ss_pred -CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHhHHHHHHHHHccCC---HhHHHHHHHHHHhCCCCC
Q 043480 332 -ELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM----NLSPDRILYTTIIDCLCKSRE---IGTAYGVFLDMVEQGITP 403 (493)
Q Consensus 332 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p 403 (493)
+....++..+...+...|++++|...++...+. +-+.....+..+...+...|+ +++|..++++. +..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 334667888999999999999999999987653 112223345678888888998 77777777665 2233
Q ss_pred -CHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 404 -DVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 404 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
....+..+...|...|++++|...+++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345677889999999999999999999854
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=1e-12 Score=122.37 Aligned_cols=214 Identities=10% Similarity=-0.020 Sum_probs=151.9
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 043480 246 LDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQL-DKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFE 324 (493)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 324 (493)
++++...++...... +.+...+..+...+...|++ ++|+..|.++....+. +...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344455555444322 23556666666777777777 7777777777665443 56667777777777777777777777
Q ss_pred HHHHcCCCcCHhHHHHHHHHHHHc---------CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc--------CCHh
Q 043480 325 GMRRRGIELDVVTFTILIKAFLRE---------GSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKS--------REIG 387 (493)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 387 (493)
+..+.. |+...+..+...+... |++++|...+++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 777653 4556777777777777 88888888888877754 55677778888888777 8888
Q ss_pred HHHHHHHHHHhCCCC---CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043480 388 TAYGVFLDMVEQGIT---PDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWD 464 (493)
Q Consensus 388 ~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 464 (493)
+|...|++.++.. + .+...|..+..+|...|++++|...|++..+.... +...+..+..++...|++++|.+.+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888752 2 36777888888888888888888888888775322 57778888888888888888876554
Q ss_pred HH
Q 043480 465 QM 466 (493)
Q Consensus 465 ~~ 466 (493)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=6e-13 Score=123.92 Aligned_cols=212 Identities=8% Similarity=-0.110 Sum_probs=174.6
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHH
Q 043480 25 IDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRF-DLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLD 103 (493)
Q Consensus 25 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 103 (493)
+++|++.+++..... +.+...+..+..++...|++ ++|+..|++.++.. +.+..+|..+..++...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~-------- 153 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDV-------- 153 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH--------
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCH--------
Confidence 566777777776654 66788899999999999999 99999999998875 45678999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc---------CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcc-
Q 043480 104 NMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKA---------KEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGD- 173 (493)
Q Consensus 104 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 173 (493)
++|++.|++..+. .|+...+..+...+... |++++|++.|++..+.. +.+...+..+..++...
T Consensus 154 ---~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~ 227 (474)
T 4abn_A 154 ---TSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLY 227 (474)
T ss_dssp ---HHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 6777888888874 56678899999999999 99999999999998864 33578888888888888
Q ss_pred -------CchhHHHHHHHHHHhCCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 043480 174 -------GKVDLAYELTVGAMKGKVE---FGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDE 243 (493)
Q Consensus 174 -------~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 243 (493)
|++++|...|++..+.. + .+...|..+..+|...|++++|...|++..+.. +.+...+..+...+...
T Consensus 228 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 228 FNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFL 305 (474)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Confidence 88999999999888754 3 477788888888889999999999988887764 45666777777778777
Q ss_pred CChHHHHHHHH
Q 043480 244 VMLDEAEKLVM 254 (493)
Q Consensus 244 ~~~~~a~~~~~ 254 (493)
|++++|...+.
T Consensus 306 g~~~eAi~~~~ 316 (474)
T 4abn_A 306 SRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 87777776543
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=2.2e-13 Score=119.94 Aligned_cols=179 Identities=13% Similarity=0.031 Sum_probs=134.3
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhccC-------CCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHH
Q 043480 41 RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL-------GFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVF 113 (493)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~ 113 (493)
+....++..+...+...|++++|..+++++.+. ..+....++..+..++...|+++.|...++ .+++.+
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~----~al~~~ 99 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLN----DALAIR 99 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH----HHHHHH
Confidence 445667888999999999999999999999873 224456778889999999999988877763 444444
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC------CCCC-CHHhHHHHHHHHhccCchhHHHHHHHHH
Q 043480 114 HKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN------GIKP-DNKACAALVVGLCGDGKVDLAYELTVGA 186 (493)
Q Consensus 114 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 186 (493)
+.......+....++..+...|...|++++|.+.|++..+. +..| ...++..+...+...|++++|.+.++++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44432222334668888999999999999999999998764 2122 3456777888888899999999888887
Q ss_pred HhC------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 187 MKG------K-VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKW 223 (493)
Q Consensus 187 ~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 223 (493)
... + .+....++..+...|...|++++|...++++..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 763 1 122345677788888888888888888888764
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=3.5e-12 Score=123.52 Aligned_cols=170 Identities=11% Similarity=0.053 Sum_probs=148.9
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
..|.++.+|+.|...|.+.|++++|++.|+++++.+ |.+...|+.+..+|.+.|++++|+..|++.++.. +.+..+|.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~ 81 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYS 81 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 457889999999999999999999999999999986 7778899999999999999999999999999875 45678999
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhH
Q 043480 84 RFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKAC 163 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 163 (493)
.+..++...|++ ++|++.|++.++. .+-+..+|+.+..+|...|++++|++.|++.++.. +-+...+
T Consensus 82 nLg~~l~~~g~~-----------~~A~~~~~kAl~l-~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~ 148 (723)
T 4gyw_A 82 NMGNTLKEMQDV-----------QGALQCYTRAIQI-NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAY 148 (723)
T ss_dssp HHHHHHHHTTCH-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred HHHHHHHHcCCH-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 999999999999 5666777777765 34467899999999999999999999999999863 2357889
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHh
Q 043480 164 AALVVGLCGDGKVDLAYELTVGAMK 188 (493)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (493)
..+..++...|++++|.+.++++.+
T Consensus 149 ~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 149 CNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhhhhHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999998888764
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.44 E-value=7.7e-11 Score=106.61 Aligned_cols=276 Identities=12% Similarity=-0.035 Sum_probs=164.1
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChh----hHHHHHHHHHhcCChhHHHHHHHHhccCCC-CcC----hh
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSI----DYNRFIGVLIRHSRFDLVQFYYQQMHPLGF-SLT----PF 80 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~ 80 (493)
.+.......+...|++++|+..+++........+.. .++.+...+...|++++|...+++...... ..+ ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 345566778889999999999999988865223222 456677888899999999999999876421 112 23
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCC--C-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 043480 81 TYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGRE--P-DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIK 157 (493)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (493)
++..+...+...|+++.|...+++ +++.... .+.+ | ....+..+...+...|++++|.+.+++.......
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~----al~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEK----AFQLINE---QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH----HHHHHHH---TTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH----HHHHHHH---hccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 356677888899999877765532 3333332 2222 2 3446677888899999999999999998754211
Q ss_pred --C--CHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043480 158 --P--DNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGV-LIYN-----ALISGFCRTGRIRRAMAIKSFMKWNGCE 227 (493)
Q Consensus 158 --~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (493)
+ ...++..+...+...|++++|...++........++. ..+. ..+..+...|++++|...+++.......
T Consensus 168 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 247 (373)
T 1hz4_A 168 YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 247 (373)
T ss_dssp SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT
T ss_pred cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCC
Confidence 1 1245566667777777777777777776542111111 1111 1223355677777777777666543211
Q ss_pred C---CHHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHHH
Q 043480 228 P---DLVTYNAILNYYCDEVMLDEAEKLVMEMESC----GIEPDV-YSYNQLLKGLCNSNQLDKAYMFMVKKM 292 (493)
Q Consensus 228 ~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 292 (493)
+ ....+..+...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+.+..
T Consensus 248 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 248 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1 1123444555566666666666666655321 111111 133333444445555555555544443
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.43 E-value=1.1e-11 Score=99.87 Aligned_cols=166 Identities=13% Similarity=0.072 Sum_probs=111.9
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
....+..++..+...|++++|++.|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34566677777888888888888888777664 5566777777777788888888888887777653 445666677777
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALV 167 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 167 (493)
.+...|++ +.|.+.++++... .+.+...+..+...+...|++++|.+.+++..+.. +.+..++..+.
T Consensus 85 ~~~~~~~~-----------~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 151 (186)
T 3as5_A 85 TYVQVQKY-----------DLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIA 151 (186)
T ss_dssp HHHHHTCH-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHhcCH-----------HHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHH
Confidence 77777777 4455555555544 33456666667777777777777777777776543 22455666666
Q ss_pred HHHhccCchhHHHHHHHHHHh
Q 043480 168 VGLCGDGKVDLAYELTVGAMK 188 (493)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~ 188 (493)
..+...|++++|...++.+.+
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 152 FSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666554
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=2.2e-10 Score=103.64 Aligned_cols=297 Identities=14% Similarity=0.031 Sum_probs=167.4
Q ss_pred HHHHHHhccCchhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHH
Q 043480 165 ALVVGLCGDGKVDLAYELTVGAMKGKVEFGV----LIYNALISGFCRTGRIRRAMAIKSFMKWNGC-EPDL----VTYNA 235 (493)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ 235 (493)
.....+...|++++|...++.........+. .+++.+...+...|++++|...+++...... .++. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3444556678888888888877765422222 1445566677777888888887777654210 1121 22445
Q ss_pred HHHHHHccCChHHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----hhhHH
Q 043480 236 ILNYYCDEVMLDEAEKLVMEMESC----GIE--P-DVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRD----KVSYN 304 (493)
Q Consensus 236 ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~ 304 (493)
+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+.+......... ...+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 566677778888887777776532 211 1 123445566677777777777777777766433211 23455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH-hHHH-----HHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHhHHH
Q 043480 305 TVIEAFCKGGQTRRAYKLFEGMRRRGIELDV-VTFT-----ILIKAFLREGSSAMAEKLLNQMRGMNLSP---DRILYTT 375 (493)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ 375 (493)
.+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+ ....+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 6666677777777777777776543111111 1111 12233556777777777777666532111 1224455
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhC----CCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 376 IIDCLCKSREIGTAYGVFLDMVEQ----GITPDV-ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGL 450 (493)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 450 (493)
+...+...|++++|...+++..+. |..++. ..+..+..++...|+.++|...+++..... +. ......+
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~~~ 332 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFISHF 332 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHHHH
Confidence 666677777777777777766532 211122 244555666667777777777777765421 00 1122333
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 043480 451 VQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~ 469 (493)
...| +....+++.+...
T Consensus 333 ~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 333 VIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HTTH--HHHHHHHHHHHHT
T ss_pred HHcc--HHHHHHHHHHHhC
Confidence 4444 5556666666654
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.42 E-value=1e-10 Score=105.87 Aligned_cols=163 Identities=10% Similarity=0.095 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-cCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHH
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRR----GIE-LDVVTFTILIKAFLREGSSAMAEKLLNQMRG-----MNLSPDRI 371 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 371 (493)
+++.+...|...|++++|.+.+++..+. +.+ ....++..+...|...|++++|...++...+ .. +....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence 3444555555555555555555554431 111 1123455566666666666666666666554 22 23355
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCC----CCCCHhhHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCC-CHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQG----ITPDVISYNALINGLCKSSR---VSEAMHLYEEMQIRGAHP-DEVTF 443 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~ 443 (493)
++..+...+.+.|++++|...+++..+.. -+.....+..+...+...|+ +.+|+..+++. +..| ....+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHH
Confidence 66666666777777777777776666421 11112334444455555666 55565555552 1222 24455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 444 KLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 444 ~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
..+...|...|++++|...++++.+
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6677777777777777777777665
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.41 E-value=2.3e-11 Score=101.60 Aligned_cols=208 Identities=10% Similarity=-0.010 Sum_probs=157.0
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
.+.|+..+..+...+.+.|++++|+..|+++.+.+++++...+..+..++...|++++|+..|++.++.. +.+..++..
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 81 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIG 81 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHH
Confidence 4567889999999999999999999999999998743788888889999999999999999999999875 446678899
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDV-------VTYTIVIDGLCKAKEFDKAVQAWEHMIENGIK 157 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (493)
+..++...|++ +.|+..+++.... .+.+. ..|..+...+...|++++|++.|++..+. .
T Consensus 82 l~~~~~~~~~~-----------~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~ 147 (228)
T 4i17_A 82 KSAAYRDMKNN-----------QEYIATLTEGIKA-VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--T 147 (228)
T ss_dssp HHHHHHHTTCH-----------HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--S
T ss_pred HHHHHHHcccH-----------HHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--C
Confidence 99999999999 6667777777764 23344 45888888999999999999999999986 4
Q ss_pred CC---HHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043480 158 PD---NKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYN 234 (493)
Q Consensus 158 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (493)
|+ ..++..+..++...|+ ..++.+.... ..+...|.... ....+.+++|+..+++..+.. +.+..+..
T Consensus 148 p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~ 218 (228)
T 4i17_A 148 SKKWKTDALYSLGVLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQ 218 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 54 4677777777765543 3344444332 22333343332 334566899999999998764 33444444
Q ss_pred HH
Q 043480 235 AI 236 (493)
Q Consensus 235 ~l 236 (493)
.+
T Consensus 219 ~l 220 (228)
T 4i17_A 219 MQ 220 (228)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=8.9e-11 Score=106.33 Aligned_cols=309 Identities=9% Similarity=-0.039 Sum_probs=214.9
Q ss_pred CCCCHhhHHHHHHHH--hccCCHHHHHHHHHHHHHC--CCCCCH--HhHHHHHHH--HhccCchhHHH---------HHH
Q 043480 121 REPDVVTYTIVIDGL--CKAKEFDKAVQAWEHMIEN--GIKPDN--KACAALVVG--LCGDGKVDLAY---------ELT 183 (493)
Q Consensus 121 ~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~--~~~~~~~~~a~---------~~~ 183 (493)
.-|+..+-+.+-..| ...+++++|.++++++... .+..|. ..|..++.. ....+.+..+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 445666666677777 8899999999999988653 222233 333333322 12234444444 666
Q ss_pred HHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHH
Q 043480 184 VGAMKGKVEFGV----LIYNALISGFCRTGRIRRAMAIKSFMKWNGC-EPD----LVTYNAILNYYCDEVMLDEAEKLVM 254 (493)
Q Consensus 184 ~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~ 254 (493)
+.+.....+.+. ..+......+...|++++|+..|++...... .++ ..++..+...|...|+++.|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 665442211111 1222344566789999999999999876421 122 4567788889999999999999999
Q ss_pred HHHHCC--CC---C-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHHcCCHHHHHHHH
Q 043480 255 EMESCG--IE---P-DVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGL-R----DKVSYNTVIEAFCKGGQTRRAYKLF 323 (493)
Q Consensus 255 ~~~~~~--~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~ 323 (493)
+..+.. .. + ...++..+...|...|++++|...+.+....... + ...++..+..+|...|++++|.+.+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 876431 11 1 2446778889999999999999999998764211 1 2346778889999999999999999
Q ss_pred HHHHH-----cCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHhHHHHHHHHHccCC---HhHHHH
Q 043480 324 EGMRR-----RGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM----NLSPDRILYTTIIDCLCKSRE---IGTAYG 391 (493)
Q Consensus 324 ~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~ 391 (493)
++... .. +....++..+...+...|++++|...++...+. +-+.....+..+...+...++ +.+|..
T Consensus 246 ~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99886 42 334677888999999999999999999988763 112233456666677777888 777777
Q ss_pred HHHHHHhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 392 VFLDMVEQGITP-DVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 392 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
.+++. +..| ....+..+...|...|++++|...|++..+
T Consensus 325 ~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 325 YFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77662 2222 234667888999999999999999999865
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.40 E-value=4.9e-11 Score=95.93 Aligned_cols=164 Identities=15% Similarity=0.083 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLC 381 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (493)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 45556667777788888888887776553 2356677777778888888888888888877654 456777778888888
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043480 382 KSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACR 461 (493)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 461 (493)
..|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+... .+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888887652 44667777888888888888888888888877532 267788888888888888888888
Q ss_pred HHHHHHHc
Q 043480 462 LWDQMMEK 469 (493)
Q Consensus 462 ~~~~~~~~ 469 (493)
.++++.+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88888764
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.38 E-value=1.3e-10 Score=97.10 Aligned_cols=207 Identities=8% Similarity=-0.007 Sum_probs=158.3
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHH
Q 043480 263 PDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILI 342 (493)
Q Consensus 263 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 342 (493)
.++..+......+...|++++|...|.+.+...+.++...+..+..++...|++++|++.+++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4667888888899999999999999999998876557777777899999999999999999999887433 667888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC---HhhHHHHH
Q 043480 343 KAFLREGSSAMAEKLLNQMRGMNLSPDR-------ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD---VISYNALI 412 (493)
Q Consensus 343 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~ 412 (493)
..+...|++++|...++...+.. +.+. ..|..+...+...|++++|...|+++++. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998764 4455 45788888888999999999999999875 454 46677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043480 413 NGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIE 483 (493)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 483 (493)
.+|... +..+++++...+ ..+...+.... ....+.+++|...++++.+. .|+......++.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~ 221 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 777654 344556665543 22444554443 34456789999999999986 565544444443
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=4.1e-11 Score=116.06 Aligned_cols=164 Identities=11% Similarity=0.007 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 043480 301 VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCL 380 (493)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (493)
.+|+.+...+.+.|++++|++.|++..+... -+...+..+..++.+.|++++|+..|++..+.. +.+...|..+..+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3445555555555555555555555554421 134455555555555555555555555555443 33445555555555
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043480 381 CKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELAC 460 (493)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 460 (493)
...|++++|.+.|++.++.. +-+...|..+..+|...|++++|+..|++..+.... +...+..+..++...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHH
Confidence 55555555555555555432 223445555555555555555665555555553211 3555555555555555555555
Q ss_pred HHHHHHHH
Q 043480 461 RLWDQMME 468 (493)
Q Consensus 461 ~~~~~~~~ 468 (493)
+.++++++
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 85
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.34 E-value=6e-09 Score=96.88 Aligned_cols=382 Identities=9% Similarity=0.010 Sum_probs=182.7
Q ss_pred HcC-ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHH
Q 043480 21 KAG-LIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLIN 99 (493)
Q Consensus 21 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 99 (493)
+.| +++.|+.+|+.+...- |. |+++.+..+|++.+.. .|+...|...+....+.++. .
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~---~ 64 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQK---K 64 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC------
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCch---H
Confidence 456 4888888888887642 32 7899999999999885 57888888888777665531 1
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CC-CCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHhc
Q 043480 100 ILLDNMDKLALEVFHKMVSK-GR-EPDVVTYTIVIDGLCK----AKEFDKAVQAWEHMIENGIKPDN-KACAALVVGLCG 172 (493)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 172 (493)
+....+|+..+.. |. +.+...|...+..+.. +++.+.+..+|++.+.... .+. ..|..... +..
T Consensus 65 -------~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~-~~~~~lw~~Y~~-fE~ 135 (493)
T 2uy1_A 65 -------FKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPM-GSLSELWKDFEN-FEL 135 (493)
T ss_dssp --------CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCC-TTHHHHHHHHHH-HHH
T ss_pred -------HHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChh-hhHHHHHHHHHH-HHH
Confidence 3345566665543 43 3366788888876542 4678889999999987421 111 11211111 111
Q ss_pred cCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--C-----
Q 043480 173 DGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEV--M----- 245 (493)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~----- 245 (493)
......+..+..... +.+..|..+++.+...--..+...|...+..-...+ -
T Consensus 136 ~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~ 194 (493)
T 2uy1_A 136 ELNKITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPH 194 (493)
T ss_dssp HHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHH
T ss_pred HhccccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhh
Confidence 111111222211110 011122222222111000012223333332211110 0
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHH-HHHH
Q 043480 246 LDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAY-KLFE 324 (493)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~ 324 (493)
.+.+..+|+++... .+.++..|...+..+.+.|+.+.|..++.+.... +. +...|.. |......++.. .+.+
T Consensus 195 ~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~-~~~l~~~----y~~~~e~~~~~~~l~~ 267 (493)
T 2uy1_A 195 ESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD-GMFLSLY----YGLVMDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-SSHHHHH----HHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-cHHHHHH----HHhhcchhHHHHHHHH
Confidence 12344455554432 1333444555555555555555555555555554 21 2222211 11111111111 1111
Q ss_pred HHHHc-----C---CCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc-CCHhHHHHHHHH
Q 043480 325 GMRRR-----G---IELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKS-REIGTAYGVFLD 395 (493)
Q Consensus 325 ~~~~~-----~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~ 395 (493)
..... + .......|...+....+.++.+.|..+|+.. +.. ..+...|...+..-... ++.+.|..+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 10000 0 0001233444555555566677777777776 321 22334443322222222 357777777777
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 396 MVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 396 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
.++. .+-+...|...+......|+.+.|..+|+++. .....|...+.--...|+.+.+.++++++.+
T Consensus 346 al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7654 22234445555665666677777777777752 1466666666666666777777777776664
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.34 E-value=2.1e-11 Score=105.51 Aligned_cols=234 Identities=12% Similarity=-0.019 Sum_probs=160.6
Q ss_pred HHcCChhHHHHHHHHHhh-------CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC------C-CCcChhhHHHH
Q 043480 20 VKAGLIDQAVHVFDEMTQ-------SNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL------G-FSLTPFTYSRF 85 (493)
Q Consensus 20 ~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 85 (493)
...|++++|+..|+++.+ .+.+....++..+..++...|++++|+..++++++. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456788888888887665 233445677888999999999999999999998864 1 12345678889
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC------CCCC-
Q 043480 86 ISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN------GIKP- 158 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~- 158 (493)
..++...|+++.|...++ ++++.+++......+....++..+...|...|++++|.+.|++..+. +..|
T Consensus 92 ~~~~~~~g~~~~A~~~~~----~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCK----RALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHHTTTCHHHHHHHHH----HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHhccHHHHHHHHH----HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 999999999988877773 44445544433222334678889999999999999999999998764 1122
Q ss_pred CHHhHHHHHHHHhccCchhHHHHHHHHHHhC-------CCC-CChhhHHHHHHHHHhcCC------HHHHHHHHHHHHHC
Q 043480 159 DNKACAALVVGLCGDGKVDLAYELTVGAMKG-------KVE-FGVLIYNALISGFCRTGR------IRRAMAIKSFMKWN 224 (493)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~-~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~ 224 (493)
...++..+...+...|++++|...++++.+. ... .....+..+...+...+. +..+...++.....
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD 247 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC
Confidence 3567888999999999999999999988753 111 223334444333333332 22333333222211
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 043480 225 GCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMES 258 (493)
Q Consensus 225 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (493)
.+....++..+...+...|++++|...+++..+
T Consensus 248 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 248 -SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123345678889999999999999999998875
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.33 E-value=1.6e-11 Score=106.35 Aligned_cols=236 Identities=14% Similarity=-0.005 Sum_probs=165.6
Q ss_pred HhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC------CCCC-CHH
Q 043480 89 LCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN------GIKP-DNK 161 (493)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~ 161 (493)
....|+++.|...+ ++|++.+++......+....++..+...|...|++++|+..|++..+. +-.| ...
T Consensus 11 ~~~~~~~~~A~~~~----~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (283)
T 3edt_B 11 SSGLVPRGSAVPLC----KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAA 86 (283)
T ss_dssp --CCSCSSSHHHHH----HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred cCCCCCHHHHHHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHH
Confidence 34578888888877 567777777765433445678999999999999999999999998754 2222 356
Q ss_pred hHHHHHHHHhccCchhHHHHHHHHHHhC------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CC
Q 043480 162 ACAALVVGLCGDGKVDLAYELTVGAMKG------K-VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWN------G-CE 227 (493)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~ 227 (493)
++..+...+...|++++|.+.+.+.... . .+....++..+...|...|++++|...+++.... + .+
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 7888999999999999999999988764 1 1334667888999999999999999999998764 1 12
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHC-------CCCCC-hhhHHHHHHHHHccCCHH------HHHHHHHHHHH
Q 043480 228 PDLVTYNAILNYYCDEVMLDEAEKLVMEMESC-------GIEPD-VYSYNQLLKGLCNSNQLD------KAYMFMVKKME 293 (493)
Q Consensus 228 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~ 293 (493)
....++..+...+...|++++|...++++.+. ...+. ...+..+...+...+... .+...+.....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 23567888899999999999999999988753 11222 233333333333323222 22221111110
Q ss_pred cCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043480 294 AKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRR 329 (493)
Q Consensus 294 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (493)
.......++..+...|...|++++|...+++..+.
T Consensus 247 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 -DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11113456888999999999999999999988753
No 88
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.25 E-value=3.5e-08 Score=91.75 Aligned_cols=362 Identities=8% Similarity=-0.016 Sum_probs=210.0
Q ss_pred hcC-ChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 043480 56 RHS-RFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDG 134 (493)
Q Consensus 56 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 134 (493)
+.| +++.|..+|+.+... -|. +++ +.+..+|++.+.. .|+...|...+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~-----------e~~~~iferal~~--~ps~~LW~~Y~~f 56 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDY-----------RSLESLFGRCLKK--SYNLDLWMLYIEY 56 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCH-----------HHHHHHHHHHSTT--CCCHHHHHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCH-----------HHHHHHHHHHhcc--CCCHHHHHHHHHH
Confidence 456 377888888887664 233 556 6778889988874 5799999999887
Q ss_pred HhccCC-HHHHHHHHHHHHHC-CCCC-CHHhHHHHHHHHh----ccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 043480 135 LCKAKE-FDKAVQAWEHMIEN-GIKP-DNKACAALVVGLC----GDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCR 207 (493)
Q Consensus 135 ~~~~~~-~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (493)
..+.+. .+....+|+..+.. |..| +...|...+..+. ..++.+.+..+|+..+......-...|...... ..
T Consensus 57 ~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~ 135 (493)
T 2uy1_A 57 VRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-EL 135 (493)
T ss_dssp HHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HH
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HH
Confidence 777663 45677788887753 4333 5677777776654 346788899999999873211111122222111 11
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC--C-----
Q 043480 208 TGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSN--Q----- 280 (493)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~----- 280 (493)
..+...+.+++.+.. +.+..|..+++.+...--..+...|...+..-...+ -
T Consensus 136 ~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~ 194 (493)
T 2uy1_A 136 ELNKITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPH 194 (493)
T ss_dssp HHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHH
T ss_pred HhccccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhh
Confidence 112222333322211 123334444443332100013345555554432221 1
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHH-HHHHH
Q 043480 281 LDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMA-EKLLN 359 (493)
Q Consensus 281 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~ 359 (493)
.+.+..+|++++...+. .+..|...+..+.+.|+.+.|..+|++.... +.+...+. .|+.....++. ..+.+
T Consensus 195 ~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~ 267 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHH
Confidence 34567889998886554 6778888888888999999999999999987 33332222 22222111111 11221
Q ss_pred HHHhCC--------CCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-cCChhHHHHHHHH
Q 043480 360 QMRGMN--------LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCK-SSRVSEAMHLYEE 430 (493)
Q Consensus 360 ~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~ 430 (493)
...... ......+|...+....+.++.+.|..+|+++ .. ...+...|......-.. .++.+.|..+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 110000 0112356777788777788999999999999 32 12344455433322223 3479999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043480 431 MQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIE 483 (493)
Q Consensus 431 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 483 (493)
..+.- .-++..+...++.....|+.+.|..+++++. .....|...+.
T Consensus 346 al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~ 392 (493)
T 2uy1_A 346 GLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIE 392 (493)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHH
T ss_pred HHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 98753 2246667778888889999999998888862 23455555444
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.25 E-value=3.6e-10 Score=96.49 Aligned_cols=172 Identities=10% Similarity=0.051 Sum_probs=118.6
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhccCCC-C-cCh
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF---SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF-S-LTP 79 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~ 79 (493)
.+.++..+..++..+.+.|++++|+..|+++.+.. |.+ ...+..+..++.+.|++++|+..|++.++... . ..+
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 46677888899999999999999999999999875 444 67788899999999999999999999998632 1 224
Q ss_pred hhHHHHHHHHhc--------cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhH-----------------HHHHHH
Q 043480 80 FTYSRFISGLCE--------VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTY-----------------TIVIDG 134 (493)
Q Consensus 80 ~~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-----------------~~l~~~ 134 (493)
.++..+..++.. .|++ +.|+..|++++.. .+.+.... ..+...
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~-----------~~A~~~~~~~l~~-~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~ 157 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDT-----------RKAIEAFQLFIDR-YPNHELVDDATQKIRELRAKLARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHH-----------HHHHHHHHHHHHH-CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhH-----------HHHHHHHHHHHHH-CcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778877 8888 6667777777764 22233333 334556
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCC--CHHhHHHHHHHHhcc----------CchhHHHHHHHHHHhC
Q 043480 135 LCKAKEFDKAVQAWEHMIENGIKP--DNKACAALVVGLCGD----------GKVDLAYELTVGAMKG 189 (493)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 189 (493)
|.+.|++++|+..|+++++..... ....+..+..++... |++++|...|+.+.+.
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 666666666666666666542111 123455555555544 5555666666555543
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=8.5e-09 Score=87.52 Aligned_cols=179 Identities=9% Similarity=0.026 Sum_probs=93.3
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043480 284 AYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGI-ELDVVTFTILIKAFLREGSSAMAEKLLNQMR 362 (493)
Q Consensus 284 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 362 (493)
++..|++....+ .++...+..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444454444332 22344444555666666666666666666654432 1244455556666666666666666666665
Q ss_pred hCCCCC-----CHHhHHHHHHHH--HccC--CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 363 GMNLSP-----DRILYTTIIDCL--CKSR--EIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 363 ~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 33 234444444442 2223 566666666666544 33322223333356666666666666665443
Q ss_pred cC-----C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 434 RG-----A---HP-DEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 434 ~~-----~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.. . .| |+.++..+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 0 12 45555455555555555 566666666653
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.22 E-value=5.8e-10 Score=84.21 Aligned_cols=131 Identities=12% Similarity=0.199 Sum_probs=102.4
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGL 89 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 89 (493)
.+|..++..+...|++++|+++|+++.+.+ +.+...+..++..+...|++++|...++++...+ +.+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 356778888999999999999999988765 5667778888888888999999999999887764 44566777788888
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 90 CEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
...|++ +.|.+.++++... .+.+...+..+...+...|++++|...++++...
T Consensus 80 ~~~~~~-----------~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDY-----------DEAIEYYQKALEL-DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCH-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCH-----------HHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 888888 5555666666554 3445677777888888888888888888887764
No 92
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.20 E-value=3.1e-10 Score=90.30 Aligned_cols=165 Identities=10% Similarity=-0.004 Sum_probs=124.7
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISG 88 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 88 (493)
...+..++..+.+.|++++|+..|+++.+.+ |.+...+..+..++...|++++|+..++++.... |++..+..+...
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~ 82 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKL 82 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHH
Confidence 3456778899999999999999999998876 6778889999999999999999999999998764 355433322211
Q ss_pred H-hccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHhHHHH
Q 043480 89 L-CEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKP-DNKACAAL 166 (493)
Q Consensus 89 ~-~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 166 (493)
. ...++. ..|+..+++.... .+.+...+..+...+...|++++|...|+++.+....+ +...+..+
T Consensus 83 ~~~~~~~~-----------~~a~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l 150 (176)
T 2r5s_A 83 ELHQQAAE-----------SPELKRLEQELAA-NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTF 150 (176)
T ss_dssp HHHHHHTS-----------CHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred HHHhhccc-----------chHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHH
Confidence 1 111111 2356677777764 34467888889999999999999999999998764332 34578888
Q ss_pred HHHHhccCchhHHHHHHHHHHh
Q 043480 167 VVGLCGDGKVDLAYELTVGAMK 188 (493)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~ 188 (493)
...+...|+.++|...|++.+.
T Consensus 151 ~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHH
Confidence 8888888999988888877653
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.19 E-value=1.7e-09 Score=93.91 Aligned_cols=164 Identities=14% Similarity=0.109 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc-CHhHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCC-CC----H
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRR----GIEL-DVVTFTILIKAFLRE-GSSAMAEKLLNQMRGMNLS-PD----R 370 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~-~~----~ 370 (493)
+|+.+..+|...|++++|+..+++..+. |-.. -..++..+...|... |++++|...|++..+.... .+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 3444445555555555555555444332 1000 123556666677775 7777777777766542100 01 3
Q ss_pred HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCH------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----
Q 043480 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDV------ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD----- 439 (493)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----- 439 (493)
.++..+...+...|++++|...|++..+....... ..|..+..++...|++++|...+++..+. .|+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence 45677777778888888888888887765322111 14566677777788888888888877653 232
Q ss_pred -HHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 043480 440 -EVTFKLLIGGLV--QEKKLELACRLWDQMM 467 (493)
Q Consensus 440 -~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 467 (493)
...+..++.++. ..+++++|...++++.
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 113344555554 3466777777776654
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.19 E-value=6.4e-10 Score=91.11 Aligned_cols=86 Identities=13% Similarity=0.034 Sum_probs=49.4
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHH----------------HHHHHHhcCChhHHHHHHHHhc
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNR----------------FIGVLIRHSRFDLVQFYYQQMH 71 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~ 71 (493)
+...+...+..+.+.|++++|+..|+++.+.+ |.++..|.. +..++.+.|++++|+..|++.+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455567778889999999999999988865 444444544 4444444444444444444444
Q ss_pred cCCCCcChhhHHHHHHHHhccCCh
Q 043480 72 PLGFSLTPFTYSRFISGLCEVKNF 95 (493)
Q Consensus 72 ~~~~~~~~~~~~~ll~~~~~~~~~ 95 (493)
+.. +.++..+..+..++...|++
T Consensus 82 ~~~-p~~~~~~~~lg~~~~~~g~~ 104 (208)
T 3urz_A 82 QKA-PNNVDCLEACAEMQVCRGQE 104 (208)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHC-CCCHHHHHHHHHHHHHcCCH
Confidence 432 22334444444444444444
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.19 E-value=9.3e-10 Score=95.51 Aligned_cols=205 Identities=7% Similarity=-0.086 Sum_probs=137.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHhccCCC---Cc--Chh
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQS----NCRV-FSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF---SL--TPF 80 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~ 80 (493)
.|...+..|...|++++|+..|+++.+. +.++ ...+|+.+..+|...|++++|+..|++.++... .+ -..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5777888999999999999999987653 2122 256788899999999999999999998876421 11 135
Q ss_pred hHHHHHHHHhcc-CChhhHHHHHHHHHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 043480 81 TYSRFISGLCEV-KNFTLINILLDNMDKLALEVFHKMVSKGREPD-VVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKP 158 (493)
Q Consensus 81 ~~~~ll~~~~~~-~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 158 (493)
++..+...|... |+++.|...++ +|++++.. .+..+. ..+++.+...+.+.|++++|+..|++..+.....
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~----~Al~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYE----LAGEWYAQ---DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHH----HHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHH----HHHHHHHh---CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 788888889886 99976665553 33333321 111111 3568888899999999999999999988764322
Q ss_pred CH------HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCC-C---hhhHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 043480 159 DN------KACAALVVGLCGDGKVDLAYELTVGAMKGKVEF-G---VLIYNALISGFC--RTGRIRRAMAIKSFMK 222 (493)
Q Consensus 159 ~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 222 (493)
.. .++..+..++...|++++|...|++........ + ...+..++..+. ..+++++|+..|+.+.
T Consensus 192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 21 145667777888888888888888877642110 1 112333444443 3355667777666554
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.18 E-value=3.6e-10 Score=110.11 Aligned_cols=171 Identities=6% Similarity=-0.147 Sum_probs=89.0
Q ss_pred HHcCChhHHHHHHHHHh--------hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 20 VKAGLIDQAVHVFDEMT--------QSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 20 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
...|++++|++.|+++. +.+ +.+...+..+..++...|++++|+..|+++++.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45566666666666655 332 4444555555556666666666666666655543 3344555555555556
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLC 171 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (493)
.|++ ++|++.|++..+. .+.+...|..+..++.+.|++++ ++.|++..+.+ +.+...+..+..++.
T Consensus 480 ~g~~-----------~~A~~~~~~al~l-~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~ 545 (681)
T 2pzi_A 480 TGDY-----------DSATKHFTEVLDT-FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARS 545 (681)
T ss_dssp HTCH-----------HHHHHHHHHHHHH-STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cCCH-----------HHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHH
Confidence 6665 4444555554443 22244555555555666666666 66665555542 123445555555555
Q ss_pred ccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 043480 172 GDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCR 207 (493)
Q Consensus 172 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (493)
..|++++|...|+++.+.. +.+...+..+..++..
T Consensus 546 ~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 546 AEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLS 580 (681)
T ss_dssp HTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC-
T ss_pred HcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHc
Confidence 5556655555555555432 2223344444444433
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.18 E-value=1.4e-08 Score=86.30 Aligned_cols=210 Identities=11% Similarity=-0.006 Sum_probs=94.9
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 043480 133 DGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIR 212 (493)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 212 (493)
+-..-.|.+..++.-...+ ....+.....-+.+++...|+++... ...|....+..+. .|...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la-~~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYV-QFLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHH-HHHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHH-HHhccc---
Confidence 3344567777777633222 11222334444556666666655310 1122222222222 222221
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 043480 213 RAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGI-EPDVYSYNQLLKGLCNSNQLDKAYMFMVKK 291 (493)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 291 (493)
|+..+++....+ +++..++..+..++...|++++|++++......+- .-+...+...+..+.+.|+.+.|.+.++++
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455555554443 34444444555555666666666666665544331 123344445555555566666666655555
Q ss_pred HHcCC---CCChhhHHHHHHHHH--HcC--CHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043480 292 MEAKG---LRDKVSYNTVIEAFC--KGG--QTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMR 362 (493)
Q Consensus 292 ~~~~~---~~~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 362 (493)
.+..+ ..+..+...+..++. ..| +..+|..+|+++... .|+..+...++.++.+.|++++|.+.++.+.
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44321 001223333333321 112 555555555555443 2232222233334555555555555555443
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.17 E-value=2.5e-09 Score=87.52 Aligned_cols=138 Identities=7% Similarity=-0.050 Sum_probs=88.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043480 341 LIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR 420 (493)
Q Consensus 341 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (493)
+..++...|++++|...|+...+.. +.+...+..+..++...|++++|...|+++++.. +.+..++..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 6677777788888888887777655 5567777777777788888888888888877653 3356667777776655543
Q ss_pred --hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043480 421 --VSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEA 484 (493)
Q Consensus 421 --~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 484 (493)
.+.+...++.... ..|....+.....++...|++++|...++++++ +.|+......+.+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~i 199 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 3334444544432 222233344455666667788888888888774 46776655554443
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.15 E-value=3.9e-09 Score=79.56 Aligned_cols=129 Identities=12% Similarity=0.153 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 043480 338 FTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCK 417 (493)
Q Consensus 338 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 417 (493)
+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4445555555666666666666655433 3345555556666666666666666666665542 3345556666666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 418 SSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 418 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.|++++|.+.++++.+... .+...+..++..+...|++++|...++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6777777777766665422 24566666666777777777777777666653
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.15 E-value=1.3e-09 Score=94.23 Aligned_cols=167 Identities=10% Similarity=-0.006 Sum_probs=121.9
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
|.+...+..++..+.+.|++++|+..|+++.+.+ |.+...+..+..++.+.|++++|...++++.... |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 5566677788888889999999999999888876 6677888888888999999999999998887763 444322222
Q ss_pred H-HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHhH
Q 043480 86 I-SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIK-PDNKAC 163 (493)
Q Consensus 86 l-~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 163 (493)
. ..+...++. +.|+..+++.... .+.+...+..+...+...|++++|++.|.++.+.... .+...+
T Consensus 191 ~~~~l~~~~~~-----------~~a~~~l~~al~~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 191 AQIELLXQAAD-----------TPEIQQLQQQVAE-NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp HHHHHHHHHTS-----------CHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred HHHHHHhhccc-----------CccHHHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 2 224445555 3455666666665 3556778888888888889999999888888875322 125677
Q ss_pred HHHHHHHhccCchhHHHHHHHHHH
Q 043480 164 AALVVGLCGDGKVDLAYELTVGAM 187 (493)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~ 187 (493)
..++..+...|+.++|...+++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 778888888888888877776654
No 101
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=2.9e-09 Score=90.81 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--ChhhH
Q 043480 229 DLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPD---VYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR--DKVSY 303 (493)
Q Consensus 229 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~ 303 (493)
+...+-.....+...|++++|...|+.+.+.. +.+ ...+..+..++.+.|++++|...|.+.+...+.. ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44445555555566666666666666665532 112 3445555556666666666666666665543321 12334
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHHc
Q 043480 304 NTVIEAFCK--------GGQTRRAYKLFEGMRRR 329 (493)
Q Consensus 304 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~ 329 (493)
..+..++.. .|++++|...|+++.+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 444555555 55555565555555544
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.12 E-value=5.8e-09 Score=86.62 Aligned_cols=188 Identities=10% Similarity=-0.026 Sum_probs=121.4
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcCh--hh
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF---SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTP--FT 81 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 81 (493)
.++..+..++..+.+.|++++|+..|+++.+.. |.+ ...+..++.++.+.|++++|+..|+++++..+.... .+
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 356677788999999999999999999999864 222 356788889999999999999999999886422111 23
Q ss_pred HHHHHHHHhc------------------cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHH
Q 043480 82 YSRFISGLCE------------------VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDK 143 (493)
Q Consensus 82 ~~~ll~~~~~------------------~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 143 (493)
+..+..++.. .|++ ++|+..|+++++. .|-+...+.......
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~A~~~~~~~l~~-~P~~~~a~~a~~~l~-------- 140 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQA-----------RAAFSDFSKLVRG-YPNSQYTTDATKRLV-------- 140 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHH-----------HHHHHHHHHHHTT-CTTCTTHHHHHHHHH--------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHH-----------HHHHHHHHHHHHH-CcCChhHHHHHHHHH--------
Confidence 4444444443 2344 7788888888875 232333333221100
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 144 AVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEF--GVLIYNALISGFCRTGRIRRAMAIKSFM 221 (493)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 221 (493)
.+...+. .....+...+...|+++.|...|+.+++..... ....+..+..++.+.|++++|.+.++.+
T Consensus 141 --~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 141 --FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp --HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 0011110 112345566777778888888887777643111 1245667777888888888888888877
Q ss_pred HHCC
Q 043480 222 KWNG 225 (493)
Q Consensus 222 ~~~~ 225 (493)
...+
T Consensus 211 ~~~~ 214 (225)
T 2yhc_A 211 AANS 214 (225)
T ss_dssp HHCC
T ss_pred HhhC
Confidence 7663
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.11 E-value=4.3e-08 Score=84.21 Aligned_cols=227 Identities=9% Similarity=-0.011 Sum_probs=144.7
Q ss_pred HHHHHHHcCCh-hHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHhccCCCCcChhhHHHHHHHH--
Q 043480 15 QISNLVKAGLI-DQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHS--RFDLVQFYYQQMHPLGFSLTPFTYSRFISGL-- 89 (493)
Q Consensus 15 l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-- 89 (493)
.+.+..+.|.+ ++|+++++.++..+ |.+..+|+.-..++...| ++++++.+++.++..+ +.+..+|+.--..+
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHH
Confidence 34444556655 68999999999987 777888999999999988 9999999999999875 44555666655555
Q ss_pred --hcc---CChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHH--HHHHHHHHHHHCCCCCCHHh
Q 043480 90 --CEV---KNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFD--KAVQAWEHMIENGIKPDNKA 162 (493)
Q Consensus 90 --~~~---~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~ 162 (493)
... +++ +.++++++.+... .+.+..+|+.-..++.+.|.++ ++++.++++.+.... |..+
T Consensus 116 ~~~~l~~~~~~-----------~~EL~~~~~~l~~-~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sA 182 (306)
T 3dra_A 116 IMELNNNDFDP-----------YREFDILEAMLSS-DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSA 182 (306)
T ss_dssp HHHHTTTCCCT-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHhccccCCH-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHH
Confidence 444 555 5667777777775 4557778888877777788887 888888888876533 6667
Q ss_pred HHHHHHHHhccCc------hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHH
Q 043480 163 CAALVVGLCGDGK------VDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRR-AMAIKSFMKWNG--CEPDLVTY 233 (493)
Q Consensus 163 ~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~ 233 (493)
|+.....+...++ ++++++.+...+... +-|...|+-+-..+.+.|+... +....+++...+ -+.++..+
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH
Confidence 7766666555554 555555555555443 3355555555555544444222 223333332211 12234444
Q ss_pred HHHHHHHHccCChHHHHHHHHHHH
Q 043480 234 NAILNYYCDEVMLDEAEKLVMEME 257 (493)
Q Consensus 234 ~~ll~~~~~~~~~~~a~~~~~~~~ 257 (493)
..+...+.+.|+.++|.++++.+.
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHH
Confidence 444444445555555555555544
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.08 E-value=4e-10 Score=86.75 Aligned_cols=145 Identities=15% Similarity=0.015 Sum_probs=88.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCC
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKN 94 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 94 (493)
|..++...|++++|+..++...... |.++..+..+...|.+.|++++|++.|++.++.. +.++.+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 4455566677777777777776653 4445556667777777777777777777777664 4456677777777777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH-HHHHHHCCCCCCHHhHHHHHHHHhcc
Q 043480 95 FTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQA-WEHMIENGIKPDNKACAALVVGLCGD 173 (493)
Q Consensus 95 ~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 173 (493)
+ +.|+..|++.++. .+-+..+|..+...|.+.|++++|.+. +++..+.. +-+..++......+...
T Consensus 81 ~-----------~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 81 T-----------DKAVECYRRSVEL-NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp H-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTC
T ss_pred h-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 7 4555666666554 233566677777777777777665544 46665542 12344444444444444
Q ss_pred C
Q 043480 174 G 174 (493)
Q Consensus 174 ~ 174 (493)
|
T Consensus 148 G 148 (150)
T 4ga2_A 148 G 148 (150)
T ss_dssp C
T ss_pred C
Confidence 4
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.06 E-value=4.1e-08 Score=80.49 Aligned_cols=177 Identities=12% Similarity=0.059 Sum_probs=120.3
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcC----CHHHHHHHHH
Q 043480 284 AYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREG----SSAMAEKLLN 359 (493)
Q Consensus 284 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 359 (493)
|+..|.+..+. .++..+..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|..+|+
T Consensus 5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 44555555554 356666667777777777777777777777654 45556666666665 5 7778888887
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHc----cCCHhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHh----cCChhHHHHHHHH
Q 043480 360 QMRGMNLSPDRILYTTIIDCLCK----SREIGTAYGVFLDMVEQGIT-PDVISYNALINGLCK----SSRVSEAMHLYEE 430 (493)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 430 (493)
...+.+ +...+..+...|.. .+++++|...|++..+.|.. .+...+..|...|.. .+++++|+..|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 776643 45566667777765 67888888888888776421 015667777777777 7788888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCCC
Q 043480 431 MQIRGAHPDEVTFKLLIGGLVQE-K-----KLELACRLWDQMMEKGFT 472 (493)
Q Consensus 431 ~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~~ 472 (493)
..+. ..+...+..|...|... | ++++|..++++..+.|..
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 8765 23455667777777653 3 788888888888877643
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.06 E-value=1e-08 Score=99.96 Aligned_cols=173 Identities=8% Similarity=-0.073 Sum_probs=114.4
Q ss_pred HccCCHHHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHH
Q 043480 276 CNSNQLDKAYMFMVKKM--------EAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLR 347 (493)
Q Consensus 276 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (493)
...|++++|+..+.+.. ...+ .+...+..+...+...|++++|.+.|++..+.+. .+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 56677777777777776 3322 2555666677777777777777777777776532 255667777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 043480 348 EGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHL 427 (493)
Q Consensus 348 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 427 (493)
.|++++|...|++..+.. +.+...+..+..++...|++++ ...|+++++.. +.+...|..+..++...|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777654 4456667777777777777777 77777777652 33556677777777777777777777
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 043480 428 YEEMQIRGAHPD-EVTFKLLIGGLVQEKK 455 (493)
Q Consensus 428 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 455 (493)
|++..+. .|+ ...+..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 7777653 343 5566666666655444
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=1.3e-09 Score=83.90 Aligned_cols=139 Identities=12% Similarity=0.014 Sum_probs=70.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHH
Q 043480 312 KGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYG 391 (493)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 391 (493)
..|++++|+..+....... +.+...+..+...|...|++++|+..|+...+.. +.+...|..+..+|...|++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 3445555555555544321 1123334445555555566666666665555543 3455555555555666666666666
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043480 392 VFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHL-YEEMQIRGAHPDEVTFKLLIGGLVQEK 454 (493)
Q Consensus 392 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g 454 (493)
.|++.++.. +-+..++..+...|...|++++|.+. +++..+..+. ++.+|......+...|
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 666555532 22345555555555555555544433 3555443211 4555555555544444
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.04 E-value=3.6e-08 Score=81.80 Aligned_cols=187 Identities=9% Similarity=-0.026 Sum_probs=114.3
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH--hHHH
Q 043480 264 DVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRD--KVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDV--VTFT 339 (493)
Q Consensus 264 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 339 (493)
+...+..+...+.+.|++++|...|.++....+... ...+..+..++.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344555666778888888888888888887654322 345777778888888888888888888876433111 1344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCH-hh-----------
Q 043480 340 ILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDV-IS----------- 407 (493)
Q Consensus 340 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~----------- 407 (493)
.+..++...+.. .+ ..|..+...+...|++++|...|+++++. .|+. ..
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHH
Confidence 444444432100 00 00111111222334444555555544443 1221 11
Q ss_pred ------HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 408 ------YNALINGLCKSSRVSEAMHLYEEMQIRGAHP--DEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 408 ------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
...+...|...|++++|+..|+++.+..+.. ....+..+..++.+.|++++|.+.++.+...
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 1345667888999999999999998753221 1357888999999999999999999988875
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.04 E-value=6.3e-08 Score=79.38 Aligned_cols=141 Identities=13% Similarity=0.014 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccC----chhHHHHHH
Q 043480 108 LALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDG----KVDLAYELT 183 (493)
Q Consensus 108 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 183 (493)
+|++.|++..+.| +..++..+...|...+++++|++.|++..+.| +..++..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 45555556666666666666666666665543 44555555555554 4 555555555
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHc----cCChHHHHHHHH
Q 043480 184 VGAMKGKVEFGVLIYNALISGFCR----TGRIRRAMAIKSFMKWNGCE-PDLVTYNAILNYYCD----EVMLDEAEKLVM 254 (493)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~ 254 (493)
+...+.+ +...+..+...|.. .+++++|+.+|++..+.+.. .++..+..+...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 5555432 33444444444444 44555555555555444310 013344444444444 444444444444
Q ss_pred HHHH
Q 043480 255 EMES 258 (493)
Q Consensus 255 ~~~~ 258 (493)
...+
T Consensus 154 ~A~~ 157 (212)
T 3rjv_A 154 GSSS 157 (212)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.03 E-value=7.5e-07 Score=76.48 Aligned_cols=216 Identities=9% Similarity=-0.022 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHH----HHc---CCHHH
Q 043480 248 EAEKLVMEMESCGIEPDVYSYNQLLKGLCNSN--QLDKAYMFMVKKMEAKGLRDKVSYNTVIEAF----CKG---GQTRR 318 (493)
Q Consensus 248 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~ 318 (493)
+|+..++.+...+ +-+...|+.--..+...+ ++++++..+..++...+. +..+|+.-...+ ... +++++
T Consensus 51 ~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 51 RALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 4444444444322 122333344334444444 555555555555544332 333333333222 223 45566
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC------HhHHH
Q 043480 319 AYKLFEGMRRRGIELDVVTFTILIKAFLREGSSA--MAEKLLNQMRGMNLSPDRILYTTIIDCLCKSRE------IGTAY 390 (493)
Q Consensus 319 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~ 390 (493)
++++++.+.+...+ +...|+--...+.+.|.++ ++...++.+.+.+ +-|...|+.-...+...+. +++++
T Consensus 129 EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 129 EFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 66666666655332 5555555555555555555 6666666666544 4455555555555555554 66777
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH-HHHHHHHHHHcC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 391 GVFLDMVEQGITPDVISYNALINGLCKSSRVSE-AMHLYEEMQIRG-A-HPDEVTFKLLIGGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 391 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 467 (493)
+.+.+++... +-|...|+.+...+.+.|+..+ +..+.+++.+.+ . ..+...+..++++|.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7777776653 3466667766666666666443 444555554322 1 1266777777777777777777777777776
Q ss_pred H
Q 043480 468 E 468 (493)
Q Consensus 468 ~ 468 (493)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 5
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.02 E-value=5.6e-09 Score=82.93 Aligned_cols=159 Identities=11% Similarity=0.031 Sum_probs=77.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHccC
Q 043480 306 VIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDC-LCKSR 384 (493)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 384 (493)
....+...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+.. |+...+...... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 3344445555555555555544331 1134445555555555555555555555544332 132222211111 11112
Q ss_pred CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 043480 385 EIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQEKKLELACRLW 463 (493)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 463 (493)
....|...+++.++.. +.+...+..+..++...|++++|...|+++.+..+.+ +...+..+..++...|+.++|...+
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2233455565555531 2235555666666666666666666666665543322 2445566666666666666666666
Q ss_pred HHHHH
Q 043480 464 DQMME 468 (493)
Q Consensus 464 ~~~~~ 468 (493)
++.+.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.01 E-value=7.1e-09 Score=99.31 Aligned_cols=154 Identities=8% Similarity=-0.082 Sum_probs=101.2
Q ss_pred cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHH
Q 043480 22 AGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINIL 101 (493)
Q Consensus 22 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 101 (493)
.|++++|++.|+++.+.+ +.+...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~------ 73 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRH------ 73 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCH------
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH------
Confidence 467888888888887765 5667778888888888888888888888887764 44567777888888888888
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcc---CchhH
Q 043480 102 LDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGD---GKVDL 178 (493)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~ 178 (493)
++|.+.+++..+. .+.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+... |+.++
T Consensus 74 -----~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~ 146 (568)
T 2vsy_A 74 -----AEAAVLLQQASDA-APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDV 146 (568)
T ss_dssp -----HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred -----HHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHH
Confidence 5555666666554 34456778888888888888888888888887653 23566777788888887 88888
Q ss_pred HHHHHHHHHhCC
Q 043480 179 AYELTVGAMKGK 190 (493)
Q Consensus 179 a~~~~~~~~~~~ 190 (493)
|.+.+++..+.+
T Consensus 147 A~~~~~~al~~~ 158 (568)
T 2vsy_A 147 LSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC
Confidence 888888877654
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.01 E-value=1.5e-08 Score=87.46 Aligned_cols=165 Identities=12% Similarity=-0.005 Sum_probs=100.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHH-HHHH
Q 043480 300 KVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYT-TIID 378 (493)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~ 378 (493)
...+..+...+...|++++|...|++.....+. +...+..+...+...|++++|...++.+.... |+..... ....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 344455555666667777777777766665322 45566666666777777777777776665542 3333222 2222
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH
Q 043480 379 CLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQEKKLE 457 (493)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 457 (493)
.+...++.+.|...+++.++.. +.+...+..+...+...|++++|+..++++.+..... +...+..++..+...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 3445566666777777766542 3456666777777777777777777777776643221 2556777777777777777
Q ss_pred HHHHHHHHHHH
Q 043480 458 LACRLWDQMME 468 (493)
Q Consensus 458 ~a~~~~~~~~~ 468 (493)
+|...+++.+.
T Consensus 273 ~a~~~~r~al~ 283 (287)
T 3qou_A 273 ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 77776666543
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.01 E-value=5.6e-09 Score=79.84 Aligned_cols=105 Identities=11% Similarity=-0.045 Sum_probs=92.9
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
+...|.++..+..+...+.+.|++++|++.|+++.+.+ |.++..|..+..++...|++++|+..|+++++.. +.++..
T Consensus 29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~ 106 (151)
T 3gyz_A 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTP 106 (151)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHH
T ss_pred hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHH
Confidence 44567788899999999999999999999999999987 7889999999999999999999999999999876 556788
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 82 YSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
|..+..++...|++ +.|+..|++.++.
T Consensus 107 ~~~lg~~~~~lg~~-----------~eA~~~~~~al~l 133 (151)
T 3gyz_A 107 VFHTGQCQLRLKAP-----------LKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHTTCH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCH-----------HHHHHHHHHHHHh
Confidence 99999999999999 5666777777764
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.99 E-value=2e-08 Score=96.15 Aligned_cols=155 Identities=10% Similarity=-0.033 Sum_probs=111.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHH
Q 043480 278 SNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKL 357 (493)
Q Consensus 278 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 357 (493)
.|++++|...+++.....+. +...+..+...+...|++++|.+.+++..+... .+...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47788888888888776543 677788888888899999999999998887643 3677888888888899999999999
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---CChhHHHHHHHHHHHc
Q 043480 358 LNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKS---SRVSEAMHLYEEMQIR 434 (493)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 434 (493)
+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99888765 5667888888888999999999999999888763 33567788888888888 8999999999988876
Q ss_pred CC
Q 043480 435 GA 436 (493)
Q Consensus 435 ~~ 436 (493)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.99 E-value=8.8e-09 Score=76.34 Aligned_cols=114 Identities=13% Similarity=0.051 Sum_probs=96.2
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
.|.....+......|.+.|++++|++.|+++++.+ |.++..|..+..++.+.|++++|+..|++.++.+ +.+...|..
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~ 86 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIR 86 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHH
Confidence 45667788999999999999999999999999987 7789999999999999999999999999999875 566788999
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVI 132 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 132 (493)
+..++...|++ +.|++.|++.++. .|.+...+..+.
T Consensus 87 lg~~~~~~~~~-----------~~A~~~~~~al~l-~P~~~~a~~~l~ 122 (126)
T 4gco_A 87 KAACLVAMREW-----------SKAQRAYEDALQV-DPSNEEAREGVR 122 (126)
T ss_dssp HHHHHHHTTCH-----------HHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred HHHHHHHCCCH-----------HHHHHHHHHHHHH-CcCCHHHHHHHH
Confidence 99999999999 6667777777774 233455555444
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.95 E-value=3.8e-08 Score=86.01 Aligned_cols=130 Identities=11% Similarity=-0.051 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CC--CHH
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRR----GIEL-DVVTFTILIKAFLREGSSAMAEKLLNQMRGMNL---SP--DRI 371 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~ 371 (493)
.|+.+...|...|++++|+..|++.... |-.. ...++..+...|.. |++++|+..|++..+... .+ ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3444455555555555555555554322 1000 12345555555555 666666666665543210 00 134
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQ----GITPD-VISYNALINGLCKSSRVSEAMHLYEEMQ 432 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 432 (493)
++..+...|...|++++|...|++.++. +..+. ...+..+..++...|++++|...|++..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5666666667777777777777666542 11111 1244455555666677777777777766
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.92 E-value=9.3e-09 Score=89.89 Aligned_cols=193 Identities=10% Similarity=-0.066 Sum_probs=99.5
Q ss_pred cCChhHHHHHHHHHhhCCC------CCC----hhhHHHHHHHHHhcCChhHHHHHHHHhccCCC---Cc--ChhhHHHHH
Q 043480 22 AGLIDQAVHVFDEMTQSNC------RVF----SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF---SL--TPFTYSRFI 86 (493)
Q Consensus 22 ~g~~~~A~~~~~~~~~~~~------~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll 86 (493)
.|++++|.+++++..+... .++ ...|+..+..|...|++++|...|.+..+... .+ -..+|..+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5677788888877665321 111 11344555666667777777777766654310 00 123566666
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC---CC--CH
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREP-DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGI---KP--DN 160 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~ 160 (493)
.+|...|+++.|...++ +|++++... |.+. ...+++.+...|.. |++++|++.|++..+... .+ ..
T Consensus 84 ~~~~~~g~~~~A~~~~~----~Al~l~~~~---g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIE----KASVMYVEN---GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHTTCGGGGHHHHH----HHHHHHHTT---TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhCCCHHHHHHHHH----HHHHHHHHc---CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 66666677766665552 333333221 1111 13455666666666 777777777766554210 00 02
Q ss_pred HhHHHHHHHHhccCchhHHHHHHHHHHhCC----CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 161 KACAALVVGLCGDGKVDLAYELTVGAMKGK----VEFG-VLIYNALISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
.++..+...+...|++++|...|++..... ..+. ...+..+..++...|++++|...|++..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 345555556666666666666666555421 0000 1133444445555555555555555554
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.91 E-value=9.4e-08 Score=78.53 Aligned_cols=130 Identities=8% Similarity=-0.046 Sum_probs=109.6
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISG 88 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 88 (493)
...+..++..+...|++++|++.|+++. +++...|..+..++...|++++|+..|++.++.. +.+...+..+..+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 4456778899999999999999999884 4578899999999999999999999999998875 5567889999999
Q ss_pred HhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCC----------------HhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 043480 89 LCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPD----------------VVTYTIVIDGLCKAKEFDKAVQAWEHMI 152 (493)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (493)
+...|++ +.|++.|++..... +.+ ...+..+..++...|++++|.+.|++..
T Consensus 81 ~~~~~~~-----------~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 81 YYQTEKY-----------DLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHTTCH-----------HHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcccH-----------HHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999 56667777776642 222 2678888999999999999999999999
Q ss_pred HCC
Q 043480 153 ENG 155 (493)
Q Consensus 153 ~~~ 155 (493)
+..
T Consensus 149 ~~~ 151 (213)
T 1hh8_A 149 SMK 151 (213)
T ss_dssp TTC
T ss_pred HcC
Confidence 863
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.90 E-value=5e-08 Score=83.86 Aligned_cols=198 Identities=10% Similarity=0.013 Sum_probs=132.3
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
|.+...+..++..+.+.|++++|+..|+++.+.+ |.+...|..+..++...|++++|+..+++.++.. +.+...+..+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4567788999999999999999999999999876 6688899999999999999999999999999875 5567889999
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 043480 86 ISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAA 165 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (493)
..++...|++++|. ..|++....+. .+...+...+....+ ...+. .+..........+......
T Consensus 79 g~~~~~~g~~~~A~-----------~~~~~al~l~p-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~ 142 (281)
T 2c2l_A 79 GQCQLEMESYDEAI-----------ANLQRAYSLAK-EQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSY 142 (281)
T ss_dssp HHHHHHTTCHHHHH-----------HHHHHHHHHHH-HTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHH
T ss_pred HHHHHHcCCHHHHH-----------HHHHHHHHhCc-cchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHH
Confidence 99999999995555 44444433210 011111111111111 11112 2222333333444444333
Q ss_pred HHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 043480 166 LVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRT-GRIRRAMAIKSFMKWN 224 (493)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 224 (493)
+... ..|+.++|.+.++...+.. +.+......+...+.+. +.+++|.++|.++.+.
T Consensus 143 l~~l--~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 143 LTRL--IAAERERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHH--HHHHHHHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHH--HHHHHHHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3332 2688899999888887653 23334444444445554 6688899999887653
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=5.1e-07 Score=78.23 Aligned_cols=164 Identities=9% Similarity=-0.007 Sum_probs=120.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CcCHh----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHhHHH
Q 043480 306 VIEAFCKGGQTRRAYKLFEGMRRRGI-ELDVV----TFTILIKAFLREGSSAMAEKLLNQMRGMNLS-PD----RILYTT 375 (493)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 375 (493)
.+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...++.+.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788999999999988876422 12211 2334566666778999999999988873222 22 336888
Q ss_pred HHHHHHccCCHhHHHHHHHHHHh----C-CCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHH
Q 043480 376 IIDCLCKSREIGTAYGVFLDMVE----Q-GITPD-VISYNALINGLCKSSRVSEAMHLYEEMQIR----GAHPD-EVTFK 444 (493)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~ 444 (493)
+...|...|++++|...++++++ . +..+. ..++..+..+|...|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999884 1 11222 247788899999999999999999987542 22222 77889
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHc
Q 043480 445 LLIGGLVQEK-KLELACRLWDQMMEK 469 (493)
Q Consensus 445 ~l~~~~~~~g-~~~~a~~~~~~~~~~ 469 (493)
.+..++.+.| ++++|.+.+++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999 479999999988753
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.87 E-value=5.3e-08 Score=76.33 Aligned_cols=131 Identities=17% Similarity=0.152 Sum_probs=91.4
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
.+..+..++..+...|++++|...|+++.+.+ +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 34567778888888888888888888888765 5667778888888888888888888888887764 445667777777
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHH--HHHHHhccCCHHHHHHHHHHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTI--VIDGLCKAKEFDKAVQAWEHMI 152 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~ 152 (493)
++...|++ +.|...|++.... .+.+...+.. .+..+...|++++|++.+....
T Consensus 90 ~~~~~~~~-----------~~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKF-----------RAALRDYETVVKV-KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCH-----------HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccH-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77788887 4555666665554 2223444432 3333666777777777776654
No 123
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.86 E-value=9.4e-07 Score=76.68 Aligned_cols=182 Identities=8% Similarity=-0.052 Sum_probs=126.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHhccCCCCcChhhHHHHHHHHh
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHS-RFDLVQFYYQQMHPLGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (493)
++.+-....+.+..++|+++++.++..+ |.+..+|+.-..++...| .+++++.+++.++... +.+..+|+.-..++.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 4433344444455578999999999987 777888998888888888 5999999999998875 566677777766666
Q ss_pred cc-C-ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHH--------HHHHHHHHHHHCCCCCCH
Q 043480 91 EV-K-NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFD--------KAVQAWEHMIENGIKPDN 160 (493)
Q Consensus 91 ~~-~-~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~ 160 (493)
.. + ++ +.++++++.+.+. .+.|..+|+.-..++.+.|.++ ++++.++++.+..+ -|.
T Consensus 135 ~l~~~~~-----------~~EL~~~~k~L~~-dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~ 201 (349)
T 3q7a_A 135 RISPQDP-----------VSEIEYIHGSLLP-DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNN 201 (349)
T ss_dssp HHCCSCC-----------HHHHHHHHHHTSS-CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCH
T ss_pred HhcCCCh-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCH
Confidence 65 5 55 5677888888775 3457777877666666666666 88888888887643 367
Q ss_pred HhHHHHHHHHhccCc-------hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 043480 161 KACAALVVGLCGDGK-------VDLAYELTVGAMKGKVEFGVLIYNALISGFCRTG 209 (493)
Q Consensus 161 ~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 209 (493)
.+|+.....+...++ ++++++.+.+.+... +-|...|+-+-..+.+.|
T Consensus 202 SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 202 SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 777777777766665 456666666665543 445556655544444444
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.86 E-value=3.3e-08 Score=73.84 Aligned_cols=123 Identities=11% Similarity=0.067 Sum_probs=86.6
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
..+.+...+..++..+...|++++|+..|+++.... +.+...+..+..++...|++++|...+++..+.. +.+...+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 84 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYG 84 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHH
Confidence 445667778888888888888888888888887765 5567777788888888888888888888877653 34466677
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 043480 84 RFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKE 140 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 140 (493)
.+..++...|++ +.|...+++.... .+.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~-----------~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 85 RMGLALSSLNKH-----------VEAVAYYKKALEL-DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHTTCH-----------HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCH-----------HHHHHHHHHHHhc-CccchHHHHHHHHHHHHHhc
Confidence 777777777777 4555555555554 23345566666666655554
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.85 E-value=2e-07 Score=76.58 Aligned_cols=127 Identities=9% Similarity=-0.096 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLC 381 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (493)
.+..+...+...|++++|.+.|++.. .|+...+..+...+...|++++|...++...+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556666777788888888777663 4566777777777778888888888887777654 456677777777777
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCCH----------------hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 382 KSREIGTAYGVFLDMVEQGITPDV----------------ISYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
..|++++|...+++..+.. +.+. ..+..+..++...|++++|...|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8888888888888777652 2122 56667777777777777777777777764
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.83 E-value=9.1e-08 Score=70.70 Aligned_cols=116 Identities=11% Similarity=0.122 Sum_probs=94.6
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
+...+..++..+...|++++|++.|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 36788899999999999999999999999875 6678889999999999999999999999998765 556778889999
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCK 137 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 137 (493)
++...|++ +.|...++++... .+.+...+..+...+..
T Consensus 86 ~~~~~~~~-----------~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 86 AYYKQGDY-----------DEAIEYYQKALEL-DPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHTTCH-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCH-----------HHHHHHHHHHHHh-CCCcHHHHHHHHHHHHh
Confidence 99999999 5666777777664 23455566655555543
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.83 E-value=6.3e-08 Score=72.58 Aligned_cols=89 Identities=16% Similarity=0.121 Sum_probs=59.1
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
.+.++..+..++..+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|+..++++.+.. +.+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 45566667777777777777777777777777654 4556666666677777777777777777766643 334555666
Q ss_pred HHHHHhccCCh
Q 043480 85 FISGLCEVKNF 95 (493)
Q Consensus 85 ll~~~~~~~~~ 95 (493)
+..++...|++
T Consensus 90 la~~~~~~~~~ 100 (133)
T 2lni_A 90 KAAALEAMKDY 100 (133)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHHhhH
Confidence 66666666666
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.81 E-value=2.7e-07 Score=72.22 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 043480 336 VTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGL 415 (493)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 415 (493)
..+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++.++.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345556666677777777777777776644 4566777777777777788888888887777652 33566777777778
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 043480 416 CKSSRVSEAMHLYEEMQIRGAHPDEVTFKLL--IGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
...|++++|...++++.+.... +...+..+ +..+...|++++|.+.++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888888887765322 44444333 3336677888888877776643
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.81 E-value=1.4e-06 Score=75.54 Aligned_cols=168 Identities=10% Similarity=-0.003 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH-----hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCC--HH
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDV-----VTFTILIKAFLREGSSAMAEKLLNQMRGMNL---SPD--RI 371 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 371 (493)
.+...+..+...|++++|.+.+....+....... ..+..+...+...|++++|...++...+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566677788888888888877665322111 1233455566778899999999888775321 122 45
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHh---C-CCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCC-CH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVE---Q-GITP--DVISYNALINGLCKSSRVSEAMHLYEEMQIRG----AHP-DE 440 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p-~~ 440 (493)
+++.+...|...|++++|...++++.+ . +..+ ...++..+..+|...|++++|+..+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788888999999999999999998872 2 1111 12578888889999999999999999875421 111 16
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHHc
Q 043480 441 VTFKLLIGGLVQEKKLELA-CRLWDQMMEK 469 (493)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 469 (493)
.+|..+..+|.+.|++++| ...++++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7788899999999999999 7777777643
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.80 E-value=2.2e-07 Score=68.73 Aligned_cols=97 Identities=13% Similarity=0.055 Sum_probs=64.9
Q ss_pred HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGL 450 (493)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 450 (493)
..+......|.+.|++++|...|++.++.. +.+...|..+..+|...|++++|+..+++.++.+.. +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 345556666677777777777777766642 335666667777777777777777777777664322 566677777777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 043480 451 VQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~ 469 (493)
...|++++|.+.++++++.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 7777777777777777764
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.80 E-value=6.2e-08 Score=74.11 Aligned_cols=99 Identities=14% Similarity=-0.080 Sum_probs=57.0
Q ss_pred CHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043480 369 DRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIG 448 (493)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 448 (493)
+...+..+...+...|++++|...|+++++.. +.+...|..+..+|...|++++|+..|++....... +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 33445555555666666666666666665542 234555556666666666666666666666553221 4555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 043480 449 GLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~ 469 (493)
+|...|++++|...++++++.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666553
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.79 E-value=2.1e-07 Score=80.76 Aligned_cols=171 Identities=8% Similarity=-0.020 Sum_probs=120.1
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh------hhHHHHHHHHHhcCChhHHHHHHHHhccCCC---CcC-
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS------IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF---SLT- 78 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~- 78 (493)
...+...+..+...|++++|.+.+++..+.. +... ..+..+...+...|++++|+..+++...... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 3445567888999999999999999888764 2222 2234456677888999999999999875421 111
Q ss_pred -hhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 043480 79 -PFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREP--DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG 155 (493)
Q Consensus 79 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (493)
..+++.+...|...|+++.|...++ +|+++++.. +..+ ...++..+...|...|++++|++.+++..+..
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~----kal~~~~~~---~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFE----QILKQLEAL---HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHHHHhc---CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4578889999999999976665553 333333321 1111 22588889999999999999999999876531
Q ss_pred ----CCC-CHHhHHHHHHHHhccCchhHH-HHHHHHHH
Q 043480 156 ----IKP-DNKACAALVVGLCGDGKVDLA-YELTVGAM 187 (493)
Q Consensus 156 ----~~~-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 187 (493)
... -..++..+..++...|++++| ...+++..
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 111 146677788888888888888 66666554
No 133
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.78 E-value=5.2e-08 Score=74.10 Aligned_cols=93 Identities=10% Similarity=-0.082 Sum_probs=72.3
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhH
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTY 82 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (493)
...|.+...+..++..+.+.|++++|+..|+++...+ |.+...|..+..++...|++++|+..|++.+... +.++..+
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 89 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFP 89 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHH
Confidence 4455666777778888888888888888888888776 6677778888888888888888888888887765 4556677
Q ss_pred HHHHHHHhccCChhh
Q 043480 83 SRFISGLCEVKNFTL 97 (493)
Q Consensus 83 ~~ll~~~~~~~~~~~ 97 (493)
..+..++...|+++.
T Consensus 90 ~~lg~~~~~~g~~~~ 104 (142)
T 2xcb_A 90 FHAAECHLQLGDLDG 104 (142)
T ss_dssp HHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcCCHHH
Confidence 777788888888843
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.78 E-value=5.2e-06 Score=71.83 Aligned_cols=162 Identities=10% Similarity=0.049 Sum_probs=107.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cC----HhHHHHH
Q 043480 272 LKGLCNSNQLDKAYMFMVKKMEAKGLRDK-----VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIE-LD----VVTFTIL 341 (493)
Q Consensus 272 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 341 (493)
+..+...|++++|...+.+........+. ..+..+...+...+++++|...+++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 55666777777777777777664322111 12233555555667888888888887763222 12 2257778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh----C-CCCC-CHHhHHHHHHHHHccCCHhHHHHHHHHHHhC----CCCCC-HhhHHH
Q 043480 342 IKAFLREGSSAMAEKLLNQMRG----M-NLSP-DRILYTTIIDCLCKSREIGTAYGVFLDMVEQ----GITPD-VISYNA 410 (493)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~ 410 (493)
...|...|++++|...++.+.+ . +..+ ...++..+...|...|++++|...+++.++. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 8888888888888888887763 1 1112 2236778888888889999998888887642 22222 567888
Q ss_pred HHHHHHhcCC-hhHHHHHHHHHHH
Q 043480 411 LINGLCKSSR-VSEAMHLYEEMQI 433 (493)
Q Consensus 411 l~~~~~~~g~-~~~a~~~~~~~~~ 433 (493)
+..++...|+ +++|...+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888884 5888888888753
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.78 E-value=6.7e-08 Score=73.94 Aligned_cols=105 Identities=11% Similarity=-0.029 Sum_probs=90.3
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
+...|.+...+..+...+.+.|++++|+..|+++...+ |.+...|..+..++...|++++|+..|++++... +.++..
T Consensus 14 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~ 91 (148)
T 2vgx_A 14 NEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRF 91 (148)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHH
T ss_pred HcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchH
Confidence 34456778889999999999999999999999999886 7788999999999999999999999999998875 556788
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 82 YSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
+..+..++...|++ +.|+..|+.....
T Consensus 92 ~~~lg~~~~~~g~~-----------~~A~~~~~~al~~ 118 (148)
T 2vgx_A 92 PFHAAECLLQXGEL-----------AEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHTTCH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCH-----------HHHHHHHHHHHHH
Confidence 88999999999999 5566666666553
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.76 E-value=5.8e-08 Score=74.14 Aligned_cols=101 Identities=10% Similarity=0.034 Sum_probs=74.8
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCC
Q 043480 41 RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKG 120 (493)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g 120 (493)
|.+...+..+...+.+.|++++|+..|++++... +.++..|..+..++...|++ +.|+..|++....
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~-----------~~Ai~~~~~al~l- 99 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQF-----------QQAADLYAVAFAL- 99 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccH-----------HHHHHHHHHHHhh-
Confidence 4455667777778888888888888888887765 45677777788888888888 5666677776664
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 121 REPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
.|.+...|..+..+|...|++++|+..|++..+.
T Consensus 100 ~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 100 GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445667777888888888888888888887775
No 137
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.76 E-value=8e-08 Score=84.94 Aligned_cols=124 Identities=15% Similarity=0.035 Sum_probs=66.5
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC---------------hhhHHHHHHHHHhcCChhHHHHHHHHhc
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF---------------SIDYNRFIGVLIRHSRFDLVQFYYQQMH 71 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 71 (493)
.+...+..+...|.+.|++++|+..|+++.+.. +.+ ...|..+..++.+.|++++|+..|++++
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556666666666666666666666666654 222 3455555555555555555555555555
Q ss_pred cCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHH
Q 043480 72 PLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKA 144 (493)
Q Consensus 72 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 144 (493)
+.. +.+..++..+..++...|++ +.|+..|++..+. .+.+...+..+..++.+.|++++|
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~-----------~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDF-----------ELARADFQKVLQL-YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 543 33445555555555555555 3344444444443 222344555555555555555555
No 138
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.75 E-value=1.3e-05 Score=69.68 Aligned_cols=229 Identities=9% Similarity=0.063 Sum_probs=108.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc-C-CHHHHH
Q 043480 209 GRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEV-MLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNS-N-QLDKAY 285 (493)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~ 285 (493)
+..++|+++++++...+ +-+...|+.--..+...| .+++++.+++.+.... +-+..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 33455555555555543 334444444444444444 3555555555555432 23334444433333333 3 444444
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 043480 286 MFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN 365 (493)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 365 (493)
..+.+++...+. +..+|+.-.-.+.+.|.++. .+ ...+.++++.++.+.+..
T Consensus 146 ~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~--------------~~-------------~~~~~eELe~~~k~I~~d 197 (349)
T 3q7a_A 146 EYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGR--------------IS-------------EAQWGSELDWCNEMLRVD 197 (349)
T ss_dssp HHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTC--------------CC-------------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhccccc--------------cc-------------hhhHHHHHHHHHHHHHhC
Confidence 444444443322 33333333322222222220 00 000125555555555543
Q ss_pred CCCCHHhHHHHHHHHHccCC-------HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh-----------------
Q 043480 366 LSPDRILYTTIIDCLCKSRE-------IGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRV----------------- 421 (493)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------------- 421 (493)
+-|...|+.....+.+.++ ++++++.+.+++... +-|...|+.+-..+.+.|+.
T Consensus 198 -p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~ 275 (349)
T 3q7a_A 198 -GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLN 275 (349)
T ss_dssp -TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC----
T ss_pred -CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccccccccccccccc
Confidence 3455555555555555444 456666666666542 33555565555555544443
Q ss_pred ---hHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 422 ---SEAMHLYEEMQIRG-----AHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 422 ---~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
........++...+ -.++...+..+++.|...|+.++|.++++.+.+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 276 PDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp ----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 12222222222211 0246778888888888888888888888887653
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.74 E-value=1.4e-07 Score=78.99 Aligned_cols=191 Identities=11% Similarity=-0.049 Sum_probs=107.0
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHH-------HHHHHhcCChhHHHHHHHHhccCCCCcCh---------
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRF-------IGVLIRHSRFDLVQFYYQQMHPLGFSLTP--------- 79 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------- 79 (493)
...+ ..++...|++.|.++.+.+ |-....|+.+ ..++.+.++..+++..+...... .|+.
T Consensus 14 ~~~~-~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g 89 (282)
T 4f3v_A 14 AVSM-LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGG 89 (282)
T ss_dssp HHHH-TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCT
T ss_pred Hhcc-cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCC
Confidence 3344 6899999999999999987 7778889888 67777777777887777776552 2321
Q ss_pred -------------hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 043480 80 -------------FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQ 146 (493)
Q Consensus 80 -------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 146 (493)
.....+..++...|++ ++|.+.|+.+... .|+......+...+.+.+++++|+.
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y-----------~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~ 156 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNY-----------ADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVID 156 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCH-----------HHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 1122334445555666 4444555544432 1222233344445556666666666
Q ss_pred HHHHHHHCCCCCC--HHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 147 AWEHMIENGIKPD--NKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFG--VLIYNALISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 147 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
.|+...... .|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.
T Consensus 157 ~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 157 QVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 665433321 110 22445555555556666666666655553322121 2233344445555555555555555555
Q ss_pred HC
Q 043480 223 WN 224 (493)
Q Consensus 223 ~~ 224 (493)
..
T Consensus 236 a~ 237 (282)
T 4f3v_A 236 TT 237 (282)
T ss_dssp HH
T ss_pred hc
Confidence 44
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.6e-07 Score=69.65 Aligned_cols=95 Identities=14% Similarity=0.021 Sum_probs=82.8
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
|.+...+..+...+.+.|++++|+..|+++.+.+ |.+...|..+..++...|++++|+..+++.++.. +.+...+..+
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 78 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRK 78 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3466788899999999999999999999999986 7788999999999999999999999999999875 5567889999
Q ss_pred HHHHhccCChhhHHHHH
Q 043480 86 ISGLCEVKNFTLINILL 102 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~ 102 (493)
..++...|+++.|...+
T Consensus 79 g~~~~~~~~~~~A~~~~ 95 (126)
T 3upv_A 79 ATAQIAVKEYASALETL 95 (126)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHH
Confidence 99999999995554333
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.73 E-value=5.5e-07 Score=66.38 Aligned_cols=95 Identities=13% Similarity=0.174 Sum_probs=41.8
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 451 (493)
.+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|..+++++.+... .+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHH
Confidence 33444444444444444444444444321 22333444444444444444444444444443311 13444444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 043480 452 QEKKLELACRLWDQMME 468 (493)
Q Consensus 452 ~~g~~~~a~~~~~~~~~ 468 (493)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 44445555444444444
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.73 E-value=1.5e-07 Score=76.52 Aligned_cols=157 Identities=13% Similarity=0.004 Sum_probs=91.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCC-CCCHHhHHHHHHHHHccCCH
Q 043480 312 KGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRG----MNL-SPDRILYTTIIDCLCKSREI 386 (493)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~ 386 (493)
..|++++|.++++.+... .......+..+...+...|++++|...+++..+ .+. +.....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345666666644433321 222445566666666667777777666666553 111 12234566666777777777
Q ss_pred hHHHHHHHHHHhC----CCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--C-CC--CHHHHHHHHHHHHhcCC
Q 043480 387 GTAYGVFLDMVEQ----GITP--DVISYNALINGLCKSSRVSEAMHLYEEMQIRG--A-HP--DEVTFKLLIGGLVQEKK 455 (493)
Q Consensus 387 ~~a~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~p--~~~~~~~l~~~~~~~g~ 455 (493)
++|...+++..+. +-.| ....+..+...+...|++++|...+++..+.. . .+ ...++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777766542 1111 13346666777777788888877777764320 1 11 13345667777788888
Q ss_pred HHHHHHHHHHHHHc
Q 043480 456 LELACRLWDQMMEK 469 (493)
Q Consensus 456 ~~~a~~~~~~~~~~ 469 (493)
+++|.+.+++..+.
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877777654
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.72 E-value=4.1e-07 Score=68.06 Aligned_cols=95 Identities=11% Similarity=0.046 Sum_probs=39.5
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 451 (493)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHHH
Confidence 33444444444444444444444444321 12333444444444444444444444444443211 13444444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 043480 452 QEKKLELACRLWDQMME 468 (493)
Q Consensus 452 ~~g~~~~a~~~~~~~~~ 468 (493)
..|++++|.+.++++.+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444443
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.71 E-value=3.3e-07 Score=68.26 Aligned_cols=115 Identities=12% Similarity=0.007 Sum_probs=48.6
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 451 (493)
.+..+...+...|+++.|...+++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHHH
Confidence 33344444444444444444444444321 22333444444444444444444444444443211 13444444444444
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhch
Q 043480 452 QEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQD 489 (493)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 489 (493)
..|++++|...++++.+.. +.+...+..+..++...|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 4444444444444444431 123334444444444333
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.71 E-value=3.6e-07 Score=72.47 Aligned_cols=118 Identities=8% Similarity=0.128 Sum_probs=52.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHccCCH--hHH
Q 043480 313 GGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDC-LCKSREI--GTA 389 (493)
Q Consensus 313 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~a 389 (493)
.|++++|...++...+.. +.+...+..+...+...|++++|...|+...+.. +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 344455555555544432 1234444445555555555555555555444432 2334444444444 4444444 555
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 390 YGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 390 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
...++++++.. +.+...+..+..++...|++++|...++++.+
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555444431 22234444444444455555555555554444
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.71 E-value=1.1e-06 Score=73.74 Aligned_cols=196 Identities=10% Similarity=-0.051 Sum_probs=118.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHH-------HHHHHHcCCHHHHHHHHHHHHHcCCCcC---------------
Q 043480 277 NSNQLDKAYMFMVKKMEAKGLRDKVSYNTV-------IEAFCKGGQTRRAYKLFEGMRRRGIELD--------------- 334 (493)
Q Consensus 277 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 334 (493)
..++...|...|.++....+. ....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 456677777777776665443 44455544 2333333333344333333322 1111
Q ss_pred -------HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC--H
Q 043480 335 -------VVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD--V 405 (493)
Q Consensus 335 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~ 405 (493)
..........+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1122345556677888888888887776543 433355555557778888888888887665431 111 2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043480 406 ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD--EVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAA 480 (493)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 480 (493)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++... .|+...+..
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~a 246 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAA 246 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHH
Confidence 3566777788888888888888888775332243 346667777888888888888888888875 455443333
No 147
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=1.8e-07 Score=80.37 Aligned_cols=96 Identities=15% Similarity=-0.011 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHH
Q 043480 266 YSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAF 345 (493)
Q Consensus 266 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (493)
..+..+...+...|++++|...|.+.+...+. +...|..+..++...|++++|...+++..+... .+...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 34444555555555555555555555554332 445555555555566666666666665555422 2445555555566
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 043480 346 LREGSSAMAEKLLNQMRG 363 (493)
Q Consensus 346 ~~~~~~~~a~~~~~~~~~ 363 (493)
...|++++|...|+...+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666655543
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.67 E-value=8.8e-07 Score=65.58 Aligned_cols=97 Identities=12% Similarity=0.037 Sum_probs=66.4
Q ss_pred HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGL 450 (493)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 450 (493)
..+......+...|++++|...|++.++.. +.+...|..+..++...|++++|+..+++..+.+.. +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 445566666677777777777777776642 335666777777777777777777777777664322 566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 043480 451 VQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~ 469 (493)
...|++++|...++++++.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777777664
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.66 E-value=8.8e-07 Score=64.49 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=91.9
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
++..+..++..+...|++++|++.|+++.... |.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 45678889999999999999999999999876 6678889999999999999999999999998875 456778888999
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVID 133 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 133 (493)
++...|++ +.|...+++....+ +.+...+..+..
T Consensus 81 ~~~~~~~~-----------~~A~~~~~~~~~~~-~~~~~~~~~l~~ 114 (118)
T 1elw_A 81 ALEFLNRF-----------EEAKRTYEEGLKHE-ANNPQLKEGLQN 114 (118)
T ss_dssp HHHHTTCH-----------HHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HHHHHhhH-----------HHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 99999999 66778888877652 334445544433
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.66 E-value=2.5e-05 Score=67.52 Aligned_cols=133 Identities=11% Similarity=0.060 Sum_probs=64.5
Q ss_pred HHcCChh-HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC----------hhHHHHHHHHhccCCCCcChhhHHHHHHH
Q 043480 20 VKAGLID-QAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSR----------FDLVQFYYQQMHPLGFSLTPFTYSRFISG 88 (493)
Q Consensus 20 ~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 88 (493)
.+.|.++ +|+++++.++..+ |.+..+|+.--.++...+. +++++.+++.++... +.+..+|+.-.-+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445554 5666666666665 4455555554444433332 345555555555443 3344445444444
Q ss_pred HhccCC--hhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC-HHHHHHHHHHHHHCCCCCCHHhHHH
Q 043480 89 LCEVKN--FTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKE-FDKAVQAWEHMIENGIKPDNKACAA 165 (493)
Q Consensus 89 ~~~~~~--~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (493)
+...+. + +.++.+++.+.+. .+.|..+|+.-..++...|. ++++++.++++.+..+ -|..+|+.
T Consensus 118 L~~l~~~~~-----------~~EL~~~~k~l~~-dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~ 184 (331)
T 3dss_A 118 LSRLPEPNW-----------ARELELCARFLEA-DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHY 184 (331)
T ss_dssp HHHCSSCCH-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHH
T ss_pred HhccCcccH-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHH
Confidence 444442 3 3444455555443 23344555555444444554 3555555555554432 24444444
Q ss_pred HH
Q 043480 166 LV 167 (493)
Q Consensus 166 l~ 167 (493)
..
T Consensus 185 R~ 186 (331)
T 3dss_A 185 RS 186 (331)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 151
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.66 E-value=2.5e-07 Score=66.77 Aligned_cols=101 Identities=11% Similarity=-0.053 Sum_probs=88.9
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCc--ChhhHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSL--TPFTYS 83 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~ 83 (493)
|.++.++..++..+...|++++|+..|+++.+.+ +.+...|..+..++...|++++|...+++..+.. +. +...+.
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 80 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWA 80 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHH
Confidence 5677888999999999999999999999999876 6678889999999999999999999999998874 34 578889
Q ss_pred HHHHHHhcc-CChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 84 RFISGLCEV-KNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 84 ~ll~~~~~~-~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
.+..++... |++ ++|++.+++....
T Consensus 81 ~l~~~~~~~~~~~-----------~~A~~~~~~~~~~ 106 (112)
T 2kck_A 81 AKADALRYIEGKE-----------VEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHTTCSSCS-----------HHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCH-----------HHHHHHHHHHhhc
Confidence 999999999 999 6777888888775
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.65 E-value=6.8e-07 Score=78.96 Aligned_cols=96 Identities=8% Similarity=-0.016 Sum_probs=60.9
Q ss_pred HHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043480 370 RILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGG 449 (493)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 449 (493)
...|..+..+|.+.|++++|...++++++.. +.+...|..+..+|...|++++|+..|+++.+.... +...+..+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 3566666666667777777777777766642 335566666667777777777777777776664222 56666666677
Q ss_pred HHhcCCHHHH-HHHHHHHH
Q 043480 450 LVQEKKLELA-CRLWDQMM 467 (493)
Q Consensus 450 ~~~~g~~~~a-~~~~~~~~ 467 (493)
+...|++++| ...++.|.
T Consensus 274 ~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777776666 34555554
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.64 E-value=2.3e-07 Score=73.65 Aligned_cols=123 Identities=7% Similarity=0.171 Sum_probs=94.3
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHH-HhccCCh--
Q 043480 19 LVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISG-LCEVKNF-- 95 (493)
Q Consensus 19 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~-- 95 (493)
+...|++++|+..|++..+.+ |.+...|..+..++...|++++|...|+++.+.. +.++..+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 456789999999999988876 6778889999999999999999999999998765 4466777777777 7777886
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 043480 96 TLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG 155 (493)
Q Consensus 96 ~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (493)
+.| +..+++.... .+.+...+..+...+...|++++|...|++..+..
T Consensus 98 ~~A-----------~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQT-----------RAMIDKALAL-DSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHH-----------HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHH-----------HHHHHHHHHh-CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 544 4555555554 34467788888899999999999999999988763
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.64 E-value=2.1e-07 Score=69.01 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=86.5
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCC--CcC----h
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF--SLT----P 79 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~ 79 (493)
+.....+..+...+.+.|++++|++.|+++++.+ |.+...|+.+..+|...|++++|+..+++.++... .++ .
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 3456678899999999999999999999999986 77888999999999999999999999999987531 111 2
Q ss_pred hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHH
Q 043480 80 FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYT 129 (493)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 129 (493)
.+|..+..++...|++ +.|++.|++.+. ..|+.....
T Consensus 84 ~~~~~lg~~~~~~~~~-----------~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDL-----------SLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHHHHHHHHTTCH-----------HHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHHHHHHHHcCCH-----------HHHHHHHHHHHh--hCcCHHHHH
Confidence 3667777888888999 566677777665 345554443
No 155
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.63 E-value=4.1e-07 Score=73.93 Aligned_cols=161 Identities=13% Similarity=-0.075 Sum_probs=108.2
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC----CC-CcChhhHHHHHHHHhccC
Q 043480 19 LVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL----GF-SLTPFTYSRFISGLCEVK 93 (493)
Q Consensus 19 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~ 93 (493)
....|++++|.+.++.+.. ++......+..+...+...|++++|...+++.+.. +. +....++..+...+...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3568999999996665544 33455778888999999999999999999998762 11 223467788888999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC---CCCC--HHhHHHH
Q 043480 94 NFTLINILLDNMDKLALEVFHKMVSKGREP--DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG---IKPD--NKACAAL 166 (493)
Q Consensus 94 ~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l 166 (493)
+++.|...++ +++++++ ..+..+ ....+..+...+...|++++|.+.+++..... ..+. ..++..+
T Consensus 81 ~~~~A~~~~~----~al~~~~---~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 81 NWDAARRCFL----EERELLA---SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp CHHHHHHHHH----HHHHHHH---HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHH----HHHHHHH---HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 9987776553 3334433 222122 24567888889999999999999998876421 0111 2234566
Q ss_pred HHHHhccCchhHHHHHHHHHH
Q 043480 167 VVGLCGDGKVDLAYELTVGAM 187 (493)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~ 187 (493)
...+...|++++|.+.+++..
T Consensus 154 a~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 154 GDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHH
Confidence 666777777777777666554
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.62 E-value=5.4e-07 Score=70.37 Aligned_cols=104 Identities=8% Similarity=0.020 Sum_probs=90.4
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhH
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTY 82 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (493)
...+.+...+..+...+.+.|++++|++.|+++++.+ +.+...|..+..++...|++++|+..|++.++.. +.+...|
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 82 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAW 82 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3456678889999999999999999999999999986 6788899999999999999999999999999875 5568889
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 83 SRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
..+..++...|++ +.|+..|++.+..
T Consensus 83 ~~lg~~~~~~g~~-----------~~A~~~~~~al~~ 108 (164)
T 3sz7_A 83 SRLGLARFDMADY-----------KGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHTTCH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCH-----------HHHHHHHHHHHHh
Confidence 9999999999999 5666777766664
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.61 E-value=1.1e-06 Score=64.95 Aligned_cols=107 Identities=12% Similarity=0.173 Sum_probs=67.5
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGA--HPD----EVTFKL 445 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~~ 445 (493)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+++.++.+. .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556666667777777777777766642 33456666677777777777777777776654211 111 235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043480 446 LIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAAL 481 (493)
Q Consensus 446 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 481 (493)
+..++...|++++|.+.+++.++. .||+.+...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 677777777777777777777753 4666555443
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.61 E-value=4.5e-07 Score=68.80 Aligned_cols=96 Identities=9% Similarity=-0.105 Sum_probs=53.1
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 451 (493)
.+..+...+...|++++|...|+++++.. +.+...|..+..++...|++++|+..|++....+.. ++..+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 34444555555566666666666555442 234455555555666666666666666665554221 4455555566666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 043480 452 QEKKLELACRLWDQMMEK 469 (493)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~ 469 (493)
..|++++|.+.++++++.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666665543
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.59 E-value=2.2e-06 Score=66.86 Aligned_cols=97 Identities=11% Similarity=-0.064 Sum_probs=56.6
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 043480 335 VVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALING 414 (493)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 414 (493)
...+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|...+++.++.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4445555556666666666666666665543 3455556666666666666666666666665542 2235555566666
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 043480 415 LCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 415 ~~~~g~~~~a~~~~~~~~~ 433 (493)
|...|++++|...|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 6666666666666666554
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.59 E-value=2.3e-06 Score=64.30 Aligned_cols=100 Identities=9% Similarity=-0.027 Sum_probs=64.8
Q ss_pred CCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043480 368 PDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLI 447 (493)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 447 (493)
.+...+..+...+...|++++|...|++.++.. +.+...|..+..++...|++++|...+++..+.+.. +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 445566666666666777777777776666542 334566666666677777777777777776664322 566666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 043480 448 GGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.++...|++++|...++++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777777777766654
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.58 E-value=1.1e-06 Score=65.41 Aligned_cols=116 Identities=11% Similarity=0.098 Sum_probs=71.9
Q ss_pred HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHHH
Q 043480 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGA--HPD----EVTFK 444 (493)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~ 444 (493)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666666677777777777666542 33555666666677777777777777776654321 112 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhch
Q 043480 445 LLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQD 489 (493)
Q Consensus 445 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 489 (493)
.+..++...|++++|.+.++++.+. .|+...+..+.......+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHH
Confidence 7777777777777777777777764 345555555555544433
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.58 E-value=2.9e-07 Score=68.62 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=67.1
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCC--CcC----hh
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF--SLT----PF 80 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~ 80 (493)
..+..+..++..+...|++++|+..|+++.+.+ +.+...+..+...+...|++++|...++++..... .++ ..
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 345678888999999999999999999988875 66778888888899999999999999988876531 111 44
Q ss_pred hHHHHHHHHhccCCh
Q 043480 81 TYSRFISGLCEVKNF 95 (493)
Q Consensus 81 ~~~~ll~~~~~~~~~ 95 (493)
++..+..++...|++
T Consensus 81 ~~~~la~~~~~~~~~ 95 (131)
T 1elr_A 81 AYARIGNSYFKEEKY 95 (131)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccH
Confidence 555566666666666
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.58 E-value=1.8e-06 Score=64.94 Aligned_cols=97 Identities=8% Similarity=-0.020 Sum_probs=84.0
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
..+.++..+..++..+...|++++|+..|+++...+ +.+...|..+..++...|++++|...+++.++.. +.++..+.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 81 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHF 81 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHH
Confidence 456788899999999999999999999999999886 6778899999999999999999999999998875 55678899
Q ss_pred HHHHHHhccCChhhHHHHH
Q 043480 84 RFISGLCEVKNFTLINILL 102 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~ 102 (493)
.+..++...|+++.|...+
T Consensus 82 ~l~~~~~~~~~~~~A~~~~ 100 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANL 100 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHH
Confidence 9999999999995555433
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=1.6e-06 Score=66.15 Aligned_cols=117 Identities=10% Similarity=-0.005 Sum_probs=92.5
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChh
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF---SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPF 80 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (493)
..+.+...+..++..+...|++++|++.|+++.+.. +.+ ...|..+..++...|++++|+..+++..+.. +.+..
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 100 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVK 100 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHH
Confidence 346678889999999999999999999999999875 333 6778889999999999999999999998864 44677
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 043480 81 TYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDG 134 (493)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 134 (493)
.+..+..++...|++ +.|...|++.... .+.+...+..+...
T Consensus 101 ~~~~~a~~~~~~~~~-----------~~A~~~~~~al~~-~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 101 ALYRRSQALEKLGRL-----------DQAVLDLQRCVSL-EPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHHTCH-----------HHHHHHHHHHHHH-CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCH-----------HHHHHHHHHHHHc-CCCcHHHHHHHHHH
Confidence 888899999999999 5666777777664 23344455444443
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.56 E-value=1.3e-07 Score=76.72 Aligned_cols=131 Identities=9% Similarity=-0.049 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----------------HHhHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 043480 336 VTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPD----------------RILYTTIIDCLCKSREIGTAYGVFLDMVEQ 399 (493)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 399 (493)
..+..+...+...|++++|...|+...+.. +.+ ...+..+..+|...|++++|...+++.++.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344555556666666666666666666532 111 267777888888888888888888888875
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHc
Q 043480 400 GITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELAC-RLWDQMMEK 469 (493)
Q Consensus 400 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~ 469 (493)
. +.+...+..+..+|...|++++|...|++..+.... +...+..+..++...++.+++. ..+..+...
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC------------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 446677888888888888888888888888775322 6777777777777777776666 555555543
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.55 E-value=6.7e-07 Score=72.36 Aligned_cols=158 Identities=7% Similarity=-0.053 Sum_probs=83.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcCh---------------
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTP--------------- 79 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------- 79 (493)
.+......|++++|.+.|+...+.. +.....+..+...+...|++++|+..|++.++.. +.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHH
Confidence 3344445566666666655332221 2234455666666677777777777777766542 1121
Q ss_pred -hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 043480 80 -FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKP 158 (493)
Q Consensus 80 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 158 (493)
.++..+..++...|++ +.|+..+++.... .+.+...+..+..+|...|++++|++.|++..+.. +.
T Consensus 88 ~~~~~~la~~~~~~~~~-----------~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 154 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDY-----------PKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PN 154 (198)
T ss_dssp HHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHHHHHhcCH-----------HHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CC
Confidence 5666677777777777 4444555555543 33456677777777777777777777777776652 22
Q ss_pred CHHhHHHHHHHHhccCchhHHH-HHHHHHH
Q 043480 159 DNKACAALVVGLCGDGKVDLAY-ELTVGAM 187 (493)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~ 187 (493)
+...+..+..++...++.+++. ..+..+.
T Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 155 NLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHC----------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666555 4444443
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.55 E-value=4.3e-06 Score=60.72 Aligned_cols=95 Identities=9% Similarity=-0.001 Sum_probs=48.5
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 451 (493)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 34444445555555555555555554431 22344455555555555555555555555544321 13555555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 043480 452 QEKKLELACRLWDQMME 468 (493)
Q Consensus 452 ~~g~~~~a~~~~~~~~~ 468 (493)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555554
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.53 E-value=6.5e-07 Score=65.63 Aligned_cols=96 Identities=9% Similarity=-0.009 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGL 89 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 89 (493)
..+..++..+.+.|++++|+..|+++.+.+ |.+...|..+..++...|++++|+..|++.++.. +.+...+..+..++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 346678899999999999999999999986 7788999999999999999999999999999875 45677888999999
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHHHHHh
Q 043480 90 CEVKNFTLINILLDNMDKLALEVFHKMVS 118 (493)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~a~~~~~~~~~ 118 (493)
...|++ ++|+..+++.++
T Consensus 96 ~~~g~~-----------~~A~~~~~~al~ 113 (121)
T 1hxi_A 96 TNEHNA-----------NAALASLRAWLL 113 (121)
T ss_dssp HHHHHH-----------HHHHHHHHHHHC
T ss_pred HHcCCH-----------HHHHHHHHHHHH
Confidence 999999 566677777665
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.50 E-value=0.00023 Score=61.56 Aligned_cols=235 Identities=6% Similarity=-0.029 Sum_probs=101.7
Q ss_pred hcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 043480 207 RTGR-IRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVM----------LDEAEKLVMEMESCGIEPDVYSYNQLLKGL 275 (493)
Q Consensus 207 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (493)
+.|. .++|+.+++.+...+ +-+...|+.--..+...+. ++++..+++.+.... +-+..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444 346677777776553 3344444433322222221 344444444444332 23444444444444
Q ss_pred HccC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHH
Q 043480 276 CNSN--QLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQ-TRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSA 352 (493)
Q Consensus 276 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 352 (493)
...+ .+++++..+.++....+. |..+|+.-.-.+...|. ++++++.++.+.+..+. |...|+-....+...+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 4444 245555555555544332 44444444444444444 34555555555444322 4444443333333221000
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-----------CCh
Q 043480 353 MAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKS-----------SRV 421 (493)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~ 421 (493)
.+ ++ ..-...+.++++++.+.+.+... +-|...|+.+-..+... +.+
T Consensus 197 ~~-------------~~--------~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l 254 (331)
T 3dss_A 197 DS-------------GP--------QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVL 254 (331)
T ss_dssp ---------------------------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHH
T ss_pred cc-------------cc--------ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHH
Confidence 00 00 00000023455555555555432 23444444333333332 345
Q ss_pred hHHHHHHHHHHHcCCCCC-HHHHHHHH---HHHHhcCCHHHHHHHHHHHHHc
Q 043480 422 SEAMHLYEEMQIRGAHPD-EVTFKLLI---GGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 422 ~~a~~~~~~~~~~~~~p~-~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
+++++.++++.+. .|| .-++..++ .+....|..+++...+.++.+.
T Consensus 255 ~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 255 QSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 6677777777663 343 22222221 1222356667777777777654
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=9.5e-06 Score=61.75 Aligned_cols=99 Identities=10% Similarity=-0.030 Sum_probs=67.7
Q ss_pred CCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 043480 368 PDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD----VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTF 443 (493)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 443 (493)
.+...+..+...+...|++++|...|++.++. .|+ ...+..+..+|...|++++|+..+++..+.... +...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 34556666666777777777777777777664 344 456666777777777777777777777664222 56677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 444 KLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 444 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
..+..++...|++++|...++++++.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777777777777777764
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.45 E-value=8.6e-06 Score=75.01 Aligned_cols=169 Identities=7% Similarity=-0.033 Sum_probs=105.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh----------------hhHHHHHHHHHhcCChhHHHHHHHHhccCCC
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS----------------IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF 75 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 75 (493)
--.-++.+.+.|++++|++.|..+.+....... ..+..++..|...|++++|.+.+..+...-.
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 334567789999999999999999886522111 1367788999999999999999998865311
Q ss_pred C-cCh----hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHH
Q 043480 76 S-LTP----FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREP-DVVTYTIVIDGLCKAKEFDKAVQAWE 149 (493)
Q Consensus 76 ~-~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 149 (493)
. ++. .+.+.+-..+...|+++.+...+.. +..... ..+..+ -..++..+...|...|++++|..+++
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 159 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEK----SIEFAK---REKRVFLKHSLSIKLATLHYQKKQYKDSLALIN 159 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHH----HHHHHH---HSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHH----HHHHHH---HhCccHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 1 111 1223333444556777666544432 222222 222222 24567778888888899999988888
Q ss_pred HHHHC--CCC--C-CHHhHHHHHHHHhccCchhHHHHHHHHHH
Q 043480 150 HMIEN--GIK--P-DNKACAALVVGLCGDGKVDLAYELTVGAM 187 (493)
Q Consensus 150 ~~~~~--~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 187 (493)
.+... +.. + ...++..++..|...|++++|...++...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 77542 111 1 12455555666666666666666665544
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.44 E-value=4e-06 Score=60.20 Aligned_cols=95 Identities=11% Similarity=-0.072 Sum_probs=43.6
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP--DEVTFKLLIGG 449 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~ 449 (493)
.+..+...+...|++++|...+++.++.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 33444444444455555555554444431 2233444444444455555555555555544431 11 24444444555
Q ss_pred HHhc-CCHHHHHHHHHHHHH
Q 043480 450 LVQE-KKLELACRLWDQMME 468 (493)
Q Consensus 450 ~~~~-g~~~~a~~~~~~~~~ 468 (493)
+... |++++|.+.+++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 5555 555555555555443
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.43 E-value=5.2e-06 Score=61.55 Aligned_cols=96 Identities=8% Similarity=-0.024 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcC---hhhHHH
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS---IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLT---PFTYSR 84 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 84 (493)
.+..++..+.+.|++++|++.|+++.+.. |.+. ..+..+..++...|++++|...|+++.+.. +.+ +.++..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHH
Confidence 34557778888888888888888888765 3344 467777788888888888888888887754 222 455666
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
+..++...|++ +.|...|+.+...
T Consensus 82 la~~~~~~g~~-----------~~A~~~~~~~~~~ 105 (129)
T 2xev_A 82 LGLSQYGEGKN-----------TEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHTTCH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCH-----------HHHHHHHHHHHHH
Confidence 67777777777 4555566655553
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.39 E-value=1.5e-06 Score=67.49 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=97.7
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC-c----
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCR-VF----SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFS-L---- 77 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~---- 77 (493)
...++..+...|...|++++|++.++++.+.... ++ ..++..+...+...|++++|...+++..+.... +
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 3567888999999999999999999988764211 11 136778889999999999999999998764101 1
Q ss_pred ChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043480 78 TPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGRE-PDVVTYTIVIDGLCKAKEFDKAVQAWEHMIE 153 (493)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (493)
....+..+..++...|+++.|...+++ +++..... +.+ ....++..+...+...|++++|.+.+++..+
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~----a~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLK----HLAIAQEL---KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH----HHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHc---cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 134677778888889999777755532 22322221 111 1234677777888888889888888887764
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.37 E-value=1.7e-07 Score=87.04 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=94.5
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
+...+..++..+.+.|++++|++.|+++.+.. +.+...|..+..++.+.|++++|+..+++.++.. +.+..++..+..
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 82 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 82 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34445566677888899999999999998875 6678889999999999999999999999998875 456778888888
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHH--HhccCCHHHHHHHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDG--LCKAKEFDKAVQAWE 149 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 149 (493)
++...|++ ++|++.|++..+. .+.+...+..+..+ +.+.|++++|++.++
T Consensus 83 ~~~~~g~~-----------~eA~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 83 SNMALGKF-----------RAALRDYETVVKV-KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHTCH-----------HHHHHHHHHHHHH-STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHcCCH-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999 5556666666654 22344455555555 777888899988887
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.37 E-value=4.2e-06 Score=61.22 Aligned_cols=94 Identities=10% Similarity=-0.019 Sum_probs=62.4
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043480 373 YTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQ 452 (493)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 452 (493)
+..+...+.+.|++++|...+++.++.. +.+...|..+..++...|++++|+..+++..+.... +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3445556666777777777777776642 335666666777777777777777777777664322 56667777777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 043480 453 EKKLELACRLWDQMME 468 (493)
Q Consensus 453 ~g~~~~a~~~~~~~~~ 468 (493)
.|++++|...++++++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777764
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=4.4e-05 Score=70.23 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=15.7
Q ss_pred HHHHHccCChHHHHHHHHHHHHCC
Q 043480 237 LNYYCDEVMLDEAEKLVMEMESCG 260 (493)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~~~ 260 (493)
...+...|++++|++.|..+.+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~ 34 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKD 34 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC
Confidence 344566777777777777776543
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.33 E-value=3e-06 Score=78.32 Aligned_cols=88 Identities=10% Similarity=0.077 Sum_probs=39.5
Q ss_pred hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 043480 80 FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD 159 (493)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 159 (493)
.+|..+..++.+.+++ +.|+..+++.+.. .+.+...|..+..+|...|++++|+..|++..+.. +.+
T Consensus 318 ~~~~nla~~~~~~g~~-----------~~A~~~~~~al~~-~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~ 384 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREY-----------TKAVECCDKALGL-DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQN 384 (457)
T ss_dssp HHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHhcCH-----------HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC
Confidence 3444455555555555 3333344443332 12234445555555555555555555555555432 112
Q ss_pred HHhHHHHHHHHhccCchhHHH
Q 043480 160 NKACAALVVGLCGDGKVDLAY 180 (493)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~ 180 (493)
..++..+..++...++.+++.
T Consensus 385 ~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 385 KAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444454455444443
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.32 E-value=1.5e-06 Score=63.32 Aligned_cols=86 Identities=9% Similarity=-0.037 Sum_probs=51.0
Q ss_pred cCCHhHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043480 383 SREIGTAYGVFLDMVEQG--ITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELAC 460 (493)
Q Consensus 383 ~~~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 460 (493)
.|++++|...|++.++.+ -+.+...+..+..+|...|++++|+..|++..+..+. +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 456666666666666542 1223445666666666677777777777766664322 4666666666777777777777
Q ss_pred HHHHHHHHc
Q 043480 461 RLWDQMMEK 469 (493)
Q Consensus 461 ~~~~~~~~~ 469 (493)
..++++++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777666654
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.32 E-value=2.2e-05 Score=58.13 Aligned_cols=92 Identities=15% Similarity=0.010 Sum_probs=52.2
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 043480 376 IIDCLCKSREIGTAYGVFLDMVEQGITPDV---ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD---EVTFKLLIGG 449 (493)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~ 449 (493)
+...+...|++++|...|+++++.. +.+. ..+..+..++...|++++|...+++..+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3444555666666666666665531 1112 34555556666666666666666666554221 2 4555666666
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 043480 450 LVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~ 469 (493)
+...|++++|...++++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666654
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.30 E-value=2.4e-06 Score=78.79 Aligned_cols=134 Identities=10% Similarity=-0.015 Sum_probs=104.0
Q ss_pred HHHHHcCChhHHHHHHHHHhhC-----C--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC-----C--CCcChhhH
Q 043480 17 SNLVKAGLIDQAVHVFDEMTQS-----N--CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL-----G--FSLTPFTY 82 (493)
Q Consensus 17 ~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~ 82 (493)
..+..+|++++|+.++++.++. | .+....+++.++.+|..+|++++|..++++.++. | ++....++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4466889999999999887642 1 2233567888999999999999999999888653 2 22234678
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 83 SRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
+.|...|...|++++|..++ ++|+++++.....+.+....+.+.+-..+...+.+++|..+|.++++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~----~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMI----CKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHH----HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888 677888888765533333446677778888899999999999998763
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.29 E-value=1.2e-05 Score=62.36 Aligned_cols=63 Identities=14% Similarity=0.058 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 406 ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
..|..+..+|.+.|++++|+..+++.++.+.. +...|..+..+|...|++++|...++++++.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 45666667777777777777777777664322 5667777777777777777777777777764
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.27 E-value=6.9e-06 Score=73.35 Aligned_cols=85 Identities=8% Similarity=-0.037 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCC---------------CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSN---------------CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG 74 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (493)
..+..+...+.+.|++++|++.|+++++.. .+.+...|..+..++.+.|++++|+..++++++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346777888888888888888888877510 12233444445555555555555555555555432
Q ss_pred CCcChhhHHHHHHHHhccCCh
Q 043480 75 FSLTPFTYSRFISGLCEVKNF 95 (493)
Q Consensus 75 ~~~~~~~~~~ll~~~~~~~~~ 95 (493)
+.+..++..+..++...|++
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~ 323 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEY 323 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCH
T ss_pred -chhHHHHHHHHHHHHHccCH
Confidence 22344444445555555555
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.24 E-value=9.1e-06 Score=63.14 Aligned_cols=100 Identities=8% Similarity=-0.028 Sum_probs=83.1
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhC--------C---------CCCChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQS--------N---------CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQM 70 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 70 (493)
....+......+.+.|++++|+..|++++.. + .+.+...|..+..++.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3556788999999999999999999998875 1 0333467888999999999999999999999
Q ss_pred ccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 71 HPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 71 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
++.. +.++..|..+..++...|++ +.|+..|++....
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~-----------~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKL-----------DEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcH-----------HHHHHHHHHHHhc
Confidence 9875 56788899999999999999 5666777777664
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.24 E-value=9.1e-06 Score=62.92 Aligned_cols=133 Identities=14% Similarity=-0.015 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHhHHHHHHHHHccCCHhHHHHHHHHHHhC----CCCC-CHh
Q 043480 337 TFTILIKAFLREGSSAMAEKLLNQMRGMNL-SPD----RILYTTIIDCLCKSREIGTAYGVFLDMVEQ----GITP-DVI 406 (493)
Q Consensus 337 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~ 406 (493)
++..+...+...|++++|...++...+... .++ ..++..+...+...|++++|...+++..+. +.++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344455555556666666666555443210 011 135566666677777777777777766532 1111 134
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 407 SYNALINGLCKSSRVSEAMHLYEEMQIR----GAHP-DEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666777777888888888888776432 1111 2456777788888888888888888887653
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.22 E-value=5.5e-05 Score=57.07 Aligned_cols=108 Identities=13% Similarity=-0.012 Sum_probs=71.4
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhCCCCCC-------------HhhHHHHHHHHHhcCChhHHHHHHHHHHHc-----C
Q 043480 374 TTIIDCLCKSREIGTAYGVFLDMVEQGITPD-------------VISYNALINGLCKSSRVSEAMHLYEEMQIR-----G 435 (493)
Q Consensus 374 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~ 435 (493)
......+.+.|++++|...|++.++. .|+ ...|..+..++.+.|++++|+..+++.++. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34444455556666666666665543 222 227777788888888888888888887763 1
Q ss_pred CCC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHH
Q 043480 436 AHP-DEVTF----KLLIGGLVQEKKLELACRLWDQMMEK-----GFTLDKTVSAALIE 483 (493)
Q Consensus 436 ~~p-~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~ 483 (493)
+.| +...| .....++...|++++|+..|++.++. |+.+........+.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 145 46677 78888888888888888888888764 55555555444443
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.22 E-value=1.5e-05 Score=73.56 Aligned_cols=87 Identities=10% Similarity=0.001 Sum_probs=44.8
Q ss_pred HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 043480 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIGG 449 (493)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~ 449 (493)
..|..+..+|.+.|++++|...++++++.. +.+...|..+..+|...|++++|+..|+++.+. .| +...+..+..+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 445555555555555555555555555432 224455555555555555555555555555543 22 34455555555
Q ss_pred HHhcCCHHHHH
Q 043480 450 LVQEKKLELAC 460 (493)
Q Consensus 450 ~~~~g~~~~a~ 460 (493)
+.+.|+.+++.
T Consensus 395 ~~~~~~~~~a~ 405 (457)
T 1kt0_A 395 QKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.21 E-value=2.3e-06 Score=62.30 Aligned_cols=75 Identities=11% Similarity=0.012 Sum_probs=48.5
Q ss_pred HcCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChh
Q 043480 21 KAGLIDQAVHVFDEMTQSN--CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFT 96 (493)
Q Consensus 21 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 96 (493)
..|++++|+..|+++++.+ .|.+...+..+..++...|++++|+..|++.++.. +.++.++..+..++...|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHH
Confidence 3577777777777777753 24455667777777777777777777777777664 344666667777777777773
No 189
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.19 E-value=1.1e-05 Score=55.35 Aligned_cols=84 Identities=12% Similarity=0.113 Sum_probs=69.7
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
+.++..+..+...+.+.|++++|++.|+++.+.+ +.+...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l 83 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNL 83 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 4467789999999999999999999999999876 6678889999999999999999999999998864 3455566665
Q ss_pred HHHHhc
Q 043480 86 ISGLCE 91 (493)
Q Consensus 86 l~~~~~ 91 (493)
..++..
T Consensus 84 ~~~~~~ 89 (91)
T 1na3_A 84 GNAKQK 89 (91)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555543
No 190
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.19 E-value=4.4e-06 Score=58.70 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=61.4
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL 73 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (493)
..|.++.++..+...|.+.|++++|++.|+++.+.+ |.+...|..+..++...|++++|+..|++.++.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 467899999999999999999999999999999987 667888999999999999999999999998764
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.18 E-value=2.5e-05 Score=69.78 Aligned_cols=91 Identities=13% Similarity=0.018 Sum_probs=65.2
Q ss_pred CHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043480 369 DRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIG 448 (493)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 448 (493)
+...|..+..+|.+.|++++|...++++++.. +.+...+..+..+|...|++++|+..|+++.+.... +...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45667777777888888888888888887753 335667777778888888888888888887765322 5667777777
Q ss_pred HHHhcCCHHHHHH
Q 043480 449 GLVQEKKLELACR 461 (493)
Q Consensus 449 ~~~~~g~~~~a~~ 461 (493)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666544
No 192
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.17 E-value=5.3e-06 Score=76.99 Aligned_cols=119 Identities=12% Similarity=0.022 Sum_probs=59.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhH
Q 043480 309 AFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGT 388 (493)
Q Consensus 309 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 388 (493)
.+.+.|++++|.+.|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3445556666666666655542 2235555555555666666666666666555543 3445555555555555666666
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHH--HHhcCChhHHHHHHHH
Q 043480 389 AYGVFLDMVEQGITPDVISYNALING--LCKSSRVSEAMHLYEE 430 (493)
Q Consensus 389 a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 430 (493)
|...++++++.. +.+...+..+..+ +.+.|++++|++.+++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 666665555431 1122333333333 4455555555555543
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.13 E-value=0.00011 Score=55.03 Aligned_cols=112 Identities=10% Similarity=-0.058 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhHH
Q 043480 349 GSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCK----SSRVSEA 424 (493)
Q Consensus 349 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a 424 (493)
+++++|...|+...+.+ .+... +...|...+.+++|...|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45667777777777666 34433 5555666666777777777777764 55666677777766 6778888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 043480 425 MHLYEEMQIRGAHPDEVTFKLLIGGLVQ----EKKLELACRLWDQMMEKGF 471 (493)
Q Consensus 425 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 471 (493)
...|++..+.| ++..+..|...|.. .+++++|.+++++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88888777653 56677777777777 7788888888888877653
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=1.2e-05 Score=57.67 Aligned_cols=86 Identities=21% Similarity=0.167 Sum_probs=70.3
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcC-------h
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLT-------P 79 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~ 79 (493)
++...+..+...+.+.|++++|++.|+++.+.+ |.+...|..+..++...|++++|+..+++.++.. |+ .
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 78 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRS 78 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHH
Confidence 356788899999999999999999999999886 6788899999999999999999999999998864 33 3
Q ss_pred hhHHHHHHHHhccCCh
Q 043480 80 FTYSRFISGLCEVKNF 95 (493)
Q Consensus 80 ~~~~~ll~~~~~~~~~ 95 (493)
..+..+..++...|+.
T Consensus 79 ~~~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSV 94 (111)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhH
Confidence 4445555555555544
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.09 E-value=3.4e-06 Score=74.49 Aligned_cols=149 Identities=11% Similarity=0.057 Sum_probs=66.3
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
....+..+...+.+.|++++|+..|+++.... |+... +...++++++...+. ..+|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 44556777788888888888888888877653 22210 111222222222111 125566666
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHhHHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD-NKACAAL 166 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 166 (493)
++...|++ +.|+..+++.+.. .+.+...|..+..+|...|++++|+..|++..+. .|+ ...+..+
T Consensus 239 ~~~~~g~~-----------~~A~~~~~~al~~-~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L 304 (338)
T 2if4_A 239 CLIKLKRY-----------DEAIGHCNIVLTE-EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRREL 304 (338)
T ss_dssp HHHTTTCC-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred HHHHcCCH-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 66667776 4444555555443 2335566666667777777777777777766553 232 3333333
Q ss_pred HHH-HhccCchhHHHHHHHHHHhC
Q 043480 167 VVG-LCGDGKVDLAYELTVGAMKG 189 (493)
Q Consensus 167 ~~~-~~~~~~~~~a~~~~~~~~~~ 189 (493)
... ....+..+.+...|..+...
T Consensus 305 ~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 305 RALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC
Confidence 333 22334555666666666543
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.08 E-value=3.2e-05 Score=58.31 Aligned_cols=93 Identities=9% Similarity=-0.096 Sum_probs=75.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCC------Chh-----hHHHHHHHHHhcCChhHHHHHHHHhccC----
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRV------FSI-----DYNRFIGVLIRHSRFDLVQFYYQQMHPL---- 73 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 73 (493)
...+......+.+.|++++|+..|+++++.++.. +.. .|+.+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3456778889999999999999999999865221 222 8899999999999999999999999886
Q ss_pred ---CCCcChhhH----HHHHHHHhccCChhhHHHHH
Q 043480 74 ---GFSLTPFTY----SRFISGLCEVKNFTLINILL 102 (493)
Q Consensus 74 ---~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~ 102 (493)
. +.+...| .....++...|++++|...+
T Consensus 91 ~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y 125 (159)
T 2hr2_A 91 GELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEF 125 (159)
T ss_dssp CCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHH
Confidence 4 3455677 88899999999996555444
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.07 E-value=0.00018 Score=67.99 Aligned_cols=130 Identities=11% Similarity=0.046 Sum_probs=70.0
Q ss_pred hHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC----------hhHHHHHHHHhccCCCCcChhhHHHHHHHHhccC--
Q 043480 26 DQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSR----------FDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVK-- 93 (493)
Q Consensus 26 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-- 93 (493)
++|++.++.+++.+ |.+..+|+.-..++...|+ +++++..++.+++.. +.+..+|+.-.-++.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 45577777777665 5555666666655555555 566666666665543 344455555555555555
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC-CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 043480 94 NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAK-EFDKAVQAWEHMIENGIKPDNKACAALVVGL 170 (493)
Q Consensus 94 ~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 170 (493)
++ +.+++.++++.+. .+-+..+|+.-..++.+.| .++++++.++++.+..+ -+..+|+.....+
T Consensus 124 ~~-----------~~el~~~~k~l~~-d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll 188 (567)
T 1dce_A 124 NW-----------ARELELCARFLEA-DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLL 188 (567)
T ss_dssp CH-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHH
T ss_pred cH-----------HHHHHHHHHHHhh-ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHH
Confidence 44 3444555555554 2334555555555555555 55556666555555432 2444454444433
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.05 E-value=0.0005 Score=65.06 Aligned_cols=170 Identities=8% Similarity=-0.042 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcC-
Q 043480 281 LDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQ----------TRRAYKLFEGMRRRGIELDVVTFTILIKAFLREG- 349 (493)
Q Consensus 281 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 349 (493)
.++|++.+.+++...+. +..+|+.--.++...|+ ++++++.++.+.+..++ +...|.--..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34556666666665443 44455554444444444 66666777766665433 5556666566666666
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC-CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---------
Q 043480 350 -SSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSR-EIGTAYGVFLDMVEQGITPDVISYNALINGLCKS--------- 418 (493)
Q Consensus 350 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------- 418 (493)
+++++...++.+.+.. +-+...|+.-...+.+.| .++++.+.+.++++.. +-|...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 5577777777776655 456666666666666666 6667777777666653 33556666555555442
Q ss_pred -----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043480 419 -----SRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKK 455 (493)
Q Consensus 419 -----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 455 (493)
+.++++++.++++....+. |...|..+...+.+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 3456677777776664322 56666666666666555
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.04 E-value=2e-05 Score=72.68 Aligned_cols=131 Identities=6% Similarity=-0.160 Sum_probs=92.0
Q ss_pred HHHhcCChhHHHHHHHHhccC-----C--CCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Q 043480 53 VLIRHSRFDLVQFYYQQMHPL-----G--FSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDV 125 (493)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~ 125 (493)
.+..+|++++|+.++++.++. | .+....+++.|...|...|++++|..++ +++++++++......+...
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~----~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYA----RRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHSCTTCHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHH----HHHHHHHHHHcCCCCHHHH
Confidence 355789999999999888753 2 1123467899999999999999999888 5667777777655333335
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHC-----CCC-CC-HHhHHHHHHHHhccCchhHHHHHHHHHH
Q 043480 126 VTYTIVIDGLCKAKEFDKAVQAWEHMIEN-----GIK-PD-NKACAALVVGLCGDGKVDLAYELTVGAM 187 (493)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 187 (493)
.+++.|...|...|++++|..+|++..+. |.. |+ ..+...+..++...+.+++|..++..+.
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999887642 311 11 1233344445555566666666665554
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.96 E-value=8.2e-05 Score=53.66 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 389 AYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 389 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
|...|++.++.. +.+...+..+..++...|++++|+..+++..+.... +...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444431 223444555555555555555555555555443211 344555555555555555555555555544
No 201
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.92 E-value=3.6e-05 Score=67.91 Aligned_cols=149 Identities=12% Similarity=-0.023 Sum_probs=78.3
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 043480 126 VTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGF 205 (493)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (493)
..+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ..+|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 45666778888999999999999998764 344321 222333333332221 23667777788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHccCCHHHH
Q 043480 206 CRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKG-LCNSNQLDKA 284 (493)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a 284 (493)
.+.|++++|+..+++..... +.+...+..+..++...|++++|...|+...+.. +.+...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877654 4567777778888888888888888888876542 2233444444444 2334566677
Q ss_pred HHHHHHHHHcC
Q 043480 285 YMFMVKKMEAK 295 (493)
Q Consensus 285 ~~~~~~~~~~~ 295 (493)
...|.++....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 77777776653
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.86 E-value=0.00075 Score=50.37 Aligned_cols=110 Identities=13% Similarity=-0.099 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHH
Q 043480 140 EFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCR----TGRIRRAM 215 (493)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 215 (493)
++++|++.|++..+.| .|+.. +...|...+.++.|.+.|++..+.+ +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3445555555554443 11211 4444444444444555555544432 33444444444444 44555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHCC
Q 043480 216 AIKSFMKWNGCEPDLVTYNAILNYYCD----EVMLDEAEKLVMEMESCG 260 (493)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 260 (493)
++|++..+.| ++..+..+...|.. .+++++|...|+...+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555554433 33344444444444 445555555555544433
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.86 E-value=0.00012 Score=51.13 Aligned_cols=63 Identities=21% Similarity=0.117 Sum_probs=32.0
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 405 VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 405 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
...+..+..+|...|++++|+..|++..+.+.. +...|..+..+|...|++++|.+.+++.++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344445555555555555555555555443211 344555555555555555555555555544
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.85 E-value=5.3e-05 Score=54.67 Aligned_cols=67 Identities=7% Similarity=-0.018 Sum_probs=36.7
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhcc
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHP 72 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 72 (493)
.|.++.++..++..|...|++++|++.|+++.+.+ +.+...|..+..++...|++++|...|++..+
T Consensus 15 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 15 GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555543 34444555555555555555555555555543
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.83 E-value=3.6e-05 Score=57.91 Aligned_cols=106 Identities=17% Similarity=0.167 Sum_probs=81.1
Q ss_pred HHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh----------hHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 043480 20 VKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRF----------DLVQFYYQQMHPLGFSLTPFTYSRFISGL 89 (493)
Q Consensus 20 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 89 (493)
-+.+.+++|++.+++..+.+ |.++..|+.+..++...+++ ++|+..|++.++.. +.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 45678999999999999987 88899999999999988875 49999999999875 45677889999999
Q ss_pred hccC----ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 043480 90 CEVK----NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVID 133 (493)
Q Consensus 90 ~~~~----~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 133 (493)
...| ++..+..-+ ++|++.|++.++ +.|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~----~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNF----DLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHH----HHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccH----HHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 8775 222222111 778889999888 5676665555544
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.79 E-value=8e-05 Score=56.03 Aligned_cols=38 Identities=13% Similarity=-0.149 Sum_probs=19.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 043480 347 REGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSRE 385 (493)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 385 (493)
+.+.+++|...++...+.. +.+...|..+..++...++
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~ 51 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQ 51 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcc
Confidence 3344555555555555443 4455555555555555444
No 207
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00042 Score=49.28 Aligned_cols=88 Identities=9% Similarity=-0.005 Sum_probs=51.5
Q ss_pred CHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-------HH
Q 043480 369 DRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD-------EV 441 (493)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-------~~ 441 (493)
+...+..+...+...|++++|...|++.++.. +.+...+..+..++...|++++|+..+++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34455666666666777777777777666542 334556666666666777777777777766653 232 34
Q ss_pred HHHHHHHHHHhcCCHHHH
Q 043480 442 TFKLLIGGLVQEKKLELA 459 (493)
Q Consensus 442 ~~~~l~~~~~~~g~~~~a 459 (493)
.+..+..++...|+++.|
T Consensus 80 ~~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHhHhhh
Confidence 444444555544444433
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.76 E-value=0.0003 Score=48.06 Aligned_cols=69 Identities=9% Similarity=-0.044 Sum_probs=62.8
Q ss_pred cCcchhhHHHHHHHHHHcCC---hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 043480 5 LGAQRLIYRAQISNLVKAGL---IDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG 74 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (493)
.|.|+.++..++.++...++ .++|..+|+++++.+ |.++.....+...+.+.|++++|+..|+++++..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 57899999999999976665 799999999999987 8888889999999999999999999999999875
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.74 E-value=0.00035 Score=47.56 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=24.9
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 373 YTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
+..+...+...|++++|...+++.++.. +.+...+..+..++...|++++|...+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3334444444444444444444444321 12233344444444444444444444444433
No 210
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.55 E-value=1.3e-05 Score=70.92 Aligned_cols=245 Identities=9% Similarity=0.106 Sum_probs=155.2
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
..|.+|+.|+.++.+.|...+|++.|-+ ..|+..|.-++.+..+.|++++-+..+.-.++. ..++..=+.|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi 123 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 123 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHH
Confidence 4678899999999999999999887633 245677889999999999999999999887765 45566678899
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC------------
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN------------ 154 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------ 154 (493)
-+|++.++..+.. +.+ ..||..-...+.+-|...|.++.|.-+|..+...
T Consensus 124 ~ayAk~~rL~elE---------------efl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~ 185 (624)
T 3lvg_A 124 FALAKTNRLAELE---------------EFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE 185 (624)
T ss_dssp HHHHTSCSSSTTT---------------STT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSG
T ss_pred HHHHhhCcHHHHH---------------HHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 9999998874321 111 2355555566666666666666666655443211
Q ss_pred --------CCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043480 155 --------GIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGC 226 (493)
Q Consensus 155 --------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 226 (493)
.-..+..||-.+-.+|...+.+.-|.-.--.++-.. .-...++..|...|.+++-+.+++.-....
T Consensus 186 yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglE- 259 (624)
T 3lvg_A 186 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLE- 259 (624)
T ss_dssp GGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence 012356778888888888887777765544444321 112235566777777777777777765332
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHH-HCCCC------CChhhHHHHHHHHHccCCHHHH
Q 043480 227 EPDLVTYNAILNYYCDEVMLDEAEKLVMEME-SCGIE------PDVYSYNQLLKGLCNSNQLDKA 284 (493)
Q Consensus 227 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~------~~~~~~~~l~~~~~~~~~~~~a 284 (493)
......|+.|.-.|++- ++++..+-++..- +.+++ -....|.-++-.|.+-.+++.|
T Consensus 260 rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 34556666666666654 3333333332211 11221 1234566666666666666655
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.46 E-value=0.0032 Score=54.75 Aligned_cols=72 Identities=8% Similarity=-0.093 Sum_probs=44.3
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043480 402 TPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTV 477 (493)
Q Consensus 402 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 477 (493)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++.+. .|...+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 3455556655555555667777777776666643 56666666666666667777777766666654 444443
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.45 E-value=0.0027 Score=55.22 Aligned_cols=150 Identities=9% Similarity=-0.067 Sum_probs=96.0
Q ss_pred CCCChhhHHHHHHHH--HhcCC---hhHHHHHHHHhccCCCCcChhhHHHHHHHHhcc---CChhhHHHHHHHHHHHHHH
Q 043480 40 CRVFSIDYNRFIGVL--IRHSR---FDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEV---KNFTLINILLDNMDKLALE 111 (493)
Q Consensus 40 ~~~~~~~~~~l~~~~--~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~a~~ 111 (493)
.|.+...|...+++. ...++ ..+|+.+|++.++.. +.....+..+.-++... +..... ....+ ..+.+
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~--~~~~l-~~a~~ 265 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEK--QLAAL-NTEID 265 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHH--HHHHH-HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchh--hHHHH-HHHHH
Confidence 466777888777553 33333 478889999988764 22334444444333211 111111 00110 22222
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCC
Q 043480 112 VFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKV 191 (493)
Q Consensus 112 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 191 (493)
....+ . ..+.+..+|..+...+...|++++|...+++.+..+ |+...+..+...+.-.|++++|.+.+.+....
T Consensus 266 a~~a~-~-~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL-- 339 (372)
T 3ly7_A 266 NIVTL-P-ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL-- 339 (372)
T ss_dssp HHHTC-G-GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHhc-c-cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 11111 1 235677888888877777899999999999999875 78888888888999999999999999998876
Q ss_pred CCChhhHH
Q 043480 192 EFGVLIYN 199 (493)
Q Consensus 192 ~~~~~~~~ 199 (493)
.|...+|.
T Consensus 340 ~P~~~t~~ 347 (372)
T 3ly7_A 340 RPGANTLY 347 (372)
T ss_dssp SCSHHHHH
T ss_pred CCCcChHH
Confidence 45555554
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.36 E-value=0.00099 Score=46.18 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=54.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNCRVFSI-DYNRFIGVLIRHSRFDLVQFYYQQMHPLG 74 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (493)
..+..+.+.|++++|++.|+++.+.+ +.+.. .|..+..++...|++++|+..|++.++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 46778899999999999999999876 66777 89999999999999999999999998875
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.36 E-value=0.00065 Score=61.64 Aligned_cols=102 Identities=12% Similarity=0.036 Sum_probs=78.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCC-------CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC-----C--CCcCh
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSN-------CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL-----G--FSLTP 79 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~ 79 (493)
..+..+.++|++++|+.+++++++.. .+....+++.++.+|..+|++++|+.++++++.. | .+...
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 34566778899999999999987531 1223456888999999999999999999988753 2 12234
Q ss_pred hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 80 FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
.+++.|...|...|++++|..++ ++|+++++.....
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~----~~Al~i~~~~lG~ 407 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNL----RLAFDIMRVTHGR 407 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHH----HHHHHHHHHhcCC
Confidence 67889999999999999998888 6677888777543
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.35 E-value=0.00042 Score=62.81 Aligned_cols=94 Identities=3% Similarity=-0.177 Sum_probs=73.2
Q ss_pred hcCChhHHHHHHHHhccC-----C--CCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhH
Q 043480 56 RHSRFDLVQFYYQQMHPL-----G--FSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTY 128 (493)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 128 (493)
..|++++|+.++++.++. | .+....+++.|..+|...|++++|..++ +++++++++......+....++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~----~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYG----QKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHSCSSCHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHH----HHHHHHHHHHcCCCChHHHHHH
Confidence 357889999999887653 2 1122467889999999999999999888 5677778777654323234579
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHH
Q 043480 129 TIVIDGLCKAKEFDKAVQAWEHMIE 153 (493)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (493)
+.|...|..+|++++|+.+|++..+
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.28 E-value=0.00095 Score=60.57 Aligned_cols=99 Identities=10% Similarity=-0.002 Sum_probs=77.1
Q ss_pred HHHHHhcCChhHHHHHHHHhccCC---CCc----ChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 043480 51 IGVLIRHSRFDLVQFYYQQMHPLG---FSL----TPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREP 123 (493)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~ 123 (493)
+.-+..+|++++|+.++++.++.. +.| ...+++.+...|...|++++|..++ ++++++++.......+.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~----~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYG----TRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHH----HHHHHHHHHHSCSSCHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHH----HHHHHhHHHHcCCCChH
Confidence 445668899999999999987641 112 2467888999999999999999887 56677777775543233
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043480 124 DVVTYTIVIDGLCKAKEFDKAVQAWEHMIE 153 (493)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (493)
...+++.|...|...|++++|+.+|++..+
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345799999999999999999999988764
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.24 E-value=0.0073 Score=41.06 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=48.0
Q ss_pred CCCHhhHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 402 TPDVISYNALINGLCKSSR---VSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 402 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
+.+...+..+..++...++ .++|..++++..+.+.. +......+...+.+.|++++|...|+++++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4466667777777665544 67888888888775332 6777777778888888888888888888765
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.20 E-value=0.00075 Score=61.13 Aligned_cols=94 Identities=9% Similarity=-0.033 Sum_probs=72.5
Q ss_pred HcCChhHHHHHHHHHhhC-----C--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC-----C--CCcChhhHHHHH
Q 043480 21 KAGLIDQAVHVFDEMTQS-----N--CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL-----G--FSLTPFTYSRFI 86 (493)
Q Consensus 21 ~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll 86 (493)
..|++++|+.++++.++. | .+....+++.+..+|..+|++++|..++++.++. | ++....+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357899999999987652 2 1223467888999999999999999999998753 2 222346789999
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHh
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVS 118 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~ 118 (493)
..|...|++++|..++ ++|+++++....
T Consensus 390 ~~~~~qg~~~eA~~~~----~~Al~i~~~~lG 417 (433)
T 3qww_A 390 RLYMGLENKAAGEKAL----KKAIAIMEVAHG 417 (433)
T ss_dssp HHHHHTTCHHHHHHHH----HHHHHHHHHHTC
T ss_pred HHHHhccCHHHHHHHH----HHHHHHHHHHcC
Confidence 9999999999998888 567777777644
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.17 E-value=0.0039 Score=46.35 Aligned_cols=91 Identities=15% Similarity=0.085 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 043480 387 GTAYGVFLDMVEQGITPDVISYNALINGLCKSS---RVSEAMHLYEEMQIRGAHP--DEVTFKLLIGGLVQEKKLELACR 461 (493)
Q Consensus 387 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~ 461 (493)
..+.+-|.+..+.|. ++..+...+..++++++ +.++++.+++...+.+ .| +...+..|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344555555555442 45555556666666666 4446666666665543 23 34555556666666667777777
Q ss_pred HHHHHHHcCCCCCHHHHHHH
Q 043480 462 LWDQMMEKGFTLDKTVSAAL 481 (493)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~l 481 (493)
.++.+++. .|+..--..+
T Consensus 93 y~~~lL~i--eP~n~QA~~L 110 (152)
T 1pc2_A 93 YVRGLLQT--EPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHH
Confidence 66666653 5554444433
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.09 E-value=0.021 Score=47.54 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhCCCCCC---HhhHHHHHHHHhcc-----CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcc-Cchh
Q 043480 107 KLALEVFHKMVSKGREPD---VVTYTIVIDGLCKA-----KEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGD-GKVD 177 (493)
Q Consensus 107 ~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 177 (493)
..|...+++.++. .|+ -..|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 5777888888874 555 55888888889884 99999999999999864322467777888888884 9999
Q ss_pred HHHHHHHHHHhCCCC--CChhhHH
Q 043480 178 LAYELTVGAMKGKVE--FGVLIYN 199 (493)
Q Consensus 178 ~a~~~~~~~~~~~~~--~~~~~~~ 199 (493)
.+.+.+++.+..... |+....+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH
Confidence 999999999987655 5544444
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.00 E-value=0.0041 Score=43.52 Aligned_cols=69 Identities=3% Similarity=-0.191 Sum_probs=58.3
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCC------CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSN------CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG 74 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (493)
.-++..+..|+..+.+.|++..|...|+.+.+.- ..+...++..+..++.+.|+++.|+..++++.+..
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3567788899999999999999999999987641 13456778899999999999999999999998763
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.91 E-value=0.062 Score=38.45 Aligned_cols=140 Identities=11% Similarity=0.040 Sum_probs=93.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHH
Q 043480 311 CKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAY 390 (493)
Q Consensus 311 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 390 (493)
.-.|..++..++..+..+. .+..-++.++--....-+-+-..+.++.+-+. .| ...+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHH
Confidence 3457777777777776654 24444555554444444444444444444321 11 13456666666
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043480 391 GVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKG 470 (493)
Q Consensus 391 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 470 (493)
..+-.+- .+...+...+..+...|+-+.-.+++..+.. +-+|++.....+..+|.+.|+..+|.+++.++.+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 5554432 2445667778888999999999999998644 356789999999999999999999999999999998
Q ss_pred CC
Q 043480 471 FT 472 (493)
Q Consensus 471 ~~ 472 (493)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 75
No 223
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.81 E-value=0.46 Score=47.01 Aligned_cols=272 Identities=11% Similarity=-0.014 Sum_probs=134.9
Q ss_pred HhccCchhHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C-----CCHHHHHHHHHHH
Q 043480 170 LCGDGKVDLAYELTVGAMKGKVEFGVL--IYNALISGFCRTGRIRRAMAIKSFMKWNGC--E-----PDLVTYNAILNYY 240 (493)
Q Consensus 170 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~ll~~~ 240 (493)
....|+.+++...+...+......+.. .-..+.-+....|..+++..++.......- . +....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 345566666666665544311011211 222233344555655567776666553210 0 1111122222233
Q ss_pred HccCC-hHHHHHHHHHHHHCCCCCChhh--HH--HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC
Q 043480 241 CDEVM-LDEAEKLVMEMESCGIEPDVYS--YN--QLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQ 315 (493)
Q Consensus 241 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~--~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 315 (493)
+-.|. -+++...+..+.... +... .. ++...+.-.|+.+....++..+.+.. ..+..-...+.-++...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 33332 234555555554421 2111 11 23334456677766666666655432 1122222233334446788
Q ss_pred HHHHHHHHHHHHHcCCCcCHhHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHH
Q 043480 316 TRRAYKLFEGMRRRGIELDVVTF--TILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVF 393 (493)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 393 (493)
.+.+..+.+.+... ..|....- ..+.-+|+..|+.....+++..+.+.. ..+..-...+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888888887754 12222222 233446677888888877888887642 233443344444455567777777777
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043480 394 LDMVEQGITPDVISYNALINGLCKSSRV-SEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 394 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 451 (493)
+.+.+.+ .|....-..+.-+....|+. .+++.++..+.. .+|..+-..-+-++.
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 6666543 44444334444444555554 567788888864 345444443333333
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.77 E-value=0.085 Score=52.72 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=13.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043480 335 VVTFTILIKAFLREGSSAMAEKLLNQM 361 (493)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 361 (493)
...|..+...+.+.++++.|++.|..+
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344444455555555555555544444
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.76 E-value=0.085 Score=37.78 Aligned_cols=58 Identities=12% Similarity=0.231 Sum_probs=23.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCC
Q 043480 342 IKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQG 400 (493)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 400 (493)
+......|..++-.+++..+.... +|++...-.+..+|.+.|+..+|.+++.++-+.|
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 333344444444444444432211 3344444444444444444444444444444443
No 226
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.68 E-value=0.022 Score=39.11 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=37.5
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 376 IIDCLCKSREIGTAYGVFLDMVEQGITPDVI-SYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
....+...|++++|...++++++.. +.+.. .+..+..++...|++++|...|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445566677777777777776642 22445 6666667777777777777777777664
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.58 E-value=0.032 Score=41.46 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC---CHhHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCChhHHHH
Q 043480 352 AMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSR---EIGTAYGVFLDMVEQGITP--DVISYNALINGLCKSSRVSEAMH 426 (493)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~ 426 (493)
..+.+.|....+.+ +++..+...+..++++.+ +.+++..+++...+.. .| +...+-.|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34455555555544 366666666666777766 4557777777776653 23 24455556666777777777777
Q ss_pred HHHHHHHc
Q 043480 427 LYEEMQIR 434 (493)
Q Consensus 427 ~~~~~~~~ 434 (493)
.++.+.+.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777763
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.49 E-value=0.041 Score=38.32 Aligned_cols=62 Identities=8% Similarity=-0.043 Sum_probs=29.0
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCC------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQG------ITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
-+-.+...+...|++..|...|+...+.- -.+...++..|..++.+.|+++.|..+++++.+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33444455555555555555555544320 012233444455555555555555555555544
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.46 E-value=0.031 Score=46.59 Aligned_cols=94 Identities=11% Similarity=0.027 Sum_probs=53.5
Q ss_pred HhHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCH
Q 043480 386 IGTAYGVFLDMVEQGITPD---VISYNALINGLCKS-----SRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQE-KKL 456 (493)
Q Consensus 386 ~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~ 456 (493)
...|...+++.++. .|+ ...|..+...|... |+.++|.++|++.++.+..-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34555556666653 344 34556666666653 66667777776666642221355666666666663 666
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHH
Q 043480 457 ELACRLWDQMMEKGFT--LDKTVSAAL 481 (493)
Q Consensus 457 ~~a~~~~~~~~~~~~~--~~~~~~~~l 481 (493)
++|.+.+++.++.... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 6666666666665444 554444433
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.45 E-value=0.045 Score=40.10 Aligned_cols=116 Identities=9% Similarity=0.108 Sum_probs=67.5
Q ss_pred CCCHHhHHHHHHHHHccCCH------hHHHHHHHHHHhCCCCCCHh-hHHHHHH------HHHhcCChhHHHHHHHHHHH
Q 043480 367 SPDRILYTTIIDCLCKSREI------GTAYGVFLDMVEQGITPDVI-SYNALIN------GLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~a~~~~~~~~~ 433 (493)
+.|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|...+. .+...+|.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34555555555555555665 5666667766654 455421 1111111 11234778888888888765
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 434 RGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAI 485 (493)
Q Consensus 434 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 485 (493)
.+-+- ...|.....--.+.|+.+.|.+++.+.+..+-+ +...+...++-+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~nl 138 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRNL 138 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHhh
Confidence 42222 677777777777788888888888888876533 344444444433
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.41 E-value=0.1 Score=38.26 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 043480 314 GQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN 365 (493)
Q Consensus 314 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 365 (493)
+++++|.++|+.+.+.+-.- ...|......-.+.|+...|.+++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 45555555555554432121 3333333344445555555555555555444
No 232
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.33 E-value=0.0003 Score=62.49 Aligned_cols=187 Identities=14% Similarity=0.125 Sum_probs=89.6
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
.|+..|...+.+.-+.|.+++-++.+.-+++.. .++.+=+.++-+|++.++..+-.+++ . .||..-...+.
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl----~---~~N~A~iq~VG 151 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVG 151 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTT----S---CCSSSCTHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHH----c---CCCcccHHHHH
Confidence 466677788888888888888888887666543 33344456666777666654432221 1 23333334444
Q ss_pred HHHhccCChhhHHHHHHHHHH---HH-----HHHHHHHHhC-CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 043480 87 SGLCEVKNFTLINILLDNMDK---LA-----LEVFHKMVSK-GREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIK 157 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~---~a-----~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (493)
.-|...|.++.|.-++..+.. .| +.-|+..+.. .-..++.+|-.+-.+|...+.|.-|.-.=-.++-.
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh--- 228 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH--- 228 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---
Confidence 444444444333322222110 00 0000000000 01224556666666666666665554333333221
Q ss_pred CCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 043480 158 PDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRT 208 (493)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 208 (493)
|| -+..++..|-..|.+++-+.+++...... ......|+.|.-.|++-
T Consensus 229 ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 229 AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS
T ss_pred HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc
Confidence 11 12234444555566666666555554321 33445555555555543
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.15 E-value=0.049 Score=38.90 Aligned_cols=82 Identities=15% Similarity=0.071 Sum_probs=44.7
Q ss_pred HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 043480 386 IGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSE---AMHLYEEMQIRGAHP--DEVTFKLLIGGLVQEKKLELAC 460 (493)
Q Consensus 386 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~ 460 (493)
+..+.+-|.+....|. |+..+--.+..++.++.+... ++.+++...+.+ .| +......|.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444444444332 455555555666666655444 666666655532 12 3344455556666666666666
Q ss_pred HHHHHHHHc
Q 043480 461 RLWDQMMEK 469 (493)
Q Consensus 461 ~~~~~~~~~ 469 (493)
+.++.+++.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666654
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.23 Score=37.93 Aligned_cols=98 Identities=12% Similarity=0.163 Sum_probs=50.4
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 043480 136 CKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAM 215 (493)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 215 (493)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|....+ +..+.-.|...|+.+...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3456666666665544 1455666666666666666666666655442 334444455555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 043480 216 AIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVM 254 (493)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 254 (493)
++-+.....| . ++.....+.-.|+++++.++|.
T Consensus 81 kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 81 KMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444333 1 2222233334555555555553
No 235
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.03 E-value=0.29 Score=48.84 Aligned_cols=98 Identities=9% Similarity=0.069 Sum_probs=54.2
Q ss_pred hccCCHHHHHH-HHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 043480 136 CKAKEFDKAVQ-AWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRA 214 (493)
Q Consensus 136 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 214 (493)
...+++++|.+ ++.. + |+......++..+.+.|.++.|.++.+. . ..-.......|+++.|
T Consensus 610 ~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHH
Confidence 34667777655 3311 1 1122235556666666777766654321 1 1112334556777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 043480 215 MAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEME 257 (493)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 257 (493)
.++.+.+ .+...|..+...+.+.++++.|++.|..+.
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 7664332 355667777777777777777777776654
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.61 Score=35.66 Aligned_cols=99 Identities=12% Similarity=0.179 Sum_probs=53.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHH
Q 043480 311 CKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAY 390 (493)
Q Consensus 311 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 390 (493)
...|+++.|.++.+.+ .+...|..+.......|+++-|++.|..... +..+.-.|...|+.+.-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3456666666665544 1455666666666666666666666655542 334444445556655555
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 043480 391 GVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEE 430 (493)
Q Consensus 391 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (493)
.+-+.....| -++....++...|+++++.+++.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444332 133334445555666666666644
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.97 E-value=0.12 Score=36.84 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=67.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH---HHHHHHHhccCCCCc--ChhhHHHHHHH
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDL---VQFYYQQMHPLGFSL--TPFTYSRFISG 88 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~ll~~ 88 (493)
.++........+..+.+-|++....| .++..+-..+..+++++++... ++.+++...+.+ .| .......|.-+
T Consensus 6 ~~l~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 6 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHH
Confidence 34455555566777888888777766 5777777778889998887765 999999998864 23 34555667778
Q ss_pred HhccCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 89 LCEVKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
+.+.|++ ..|++.++.+++.
T Consensus 84 ~yklg~Y-----------~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 84 NYRLKEY-----------EKALKYVRGLLQT 103 (126)
T ss_dssp HHHTTCH-----------HHHHHHHHHHHHH
T ss_pred HHHhhhH-----------HHHHHHHHHHHHh
Confidence 9999999 5666777777663
No 238
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.29 E-value=2.9 Score=43.50 Aligned_cols=85 Identities=13% Similarity=0.103 Sum_probs=52.2
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHH
Q 043480 126 VTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN----KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNAL 201 (493)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (493)
.-|..++..+.+.+.++.+.++-....+...+.+. ..|..++..+...|++++|...+..+..... -..+...|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 45677777788888888888777666543211111 2456677777777888877777766655432 23455556
Q ss_pred HHHHHhcCCHH
Q 043480 202 ISGFCRTGRIR 212 (493)
Q Consensus 202 ~~~~~~~~~~~ 212 (493)
+...+..+..+
T Consensus 978 V~~lce~~~~~ 988 (1139)
T 4fhn_B 978 VNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHCCHH
T ss_pred HHHHHhCCChh
Confidence 55555555433
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.10 E-value=0.53 Score=41.98 Aligned_cols=56 Identities=13% Similarity=0.098 Sum_probs=27.8
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043480 375 TIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEM 431 (493)
Q Consensus 375 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 431 (493)
.++..+...|+++++...+..+... .+.+...|..+|.++.+.|+..+|++.|+++
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444455555555555554433 1334445555555555555555555555544
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.98 E-value=0.15 Score=45.52 Aligned_cols=69 Identities=12% Similarity=0.106 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC-----CCCcChhh
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL-----GFSLTPFT 81 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 81 (493)
...++..+.+.|++++|+..+..+...+ |.+...|..++.++.+.|+..+|++.|+++.+. |+.|.+.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4456677778888888888888887775 677778888888888888888888888887552 77777654
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.33 E-value=1.4 Score=31.70 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=47.4
Q ss_pred CCCHhhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043480 402 TPDVISYNALINGLCKSSRV---SEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVS 478 (493)
Q Consensus 402 ~p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 478 (493)
.|+..+--.+..++.++.+. .+++.+++.+.+.+..-....+..|.-++.+.|++++|.+..+.+++. .|+..-.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCHHH
Confidence 45555555566666666543 356777777765442113556666777777778888887777777753 5654443
Q ss_pred HH
Q 043480 479 AA 480 (493)
Q Consensus 479 ~~ 480 (493)
..
T Consensus 115 ~~ 116 (134)
T 3o48_A 115 GA 116 (134)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.84 E-value=0.37 Score=46.66 Aligned_cols=128 Identities=13% Similarity=-0.005 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCC-hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHHhccC------CCCc-Chh---
Q 043480 13 RAQISNLVKAGL-IDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSR-FDLVQFYYQQMHPL------GFSL-TPF--- 80 (493)
Q Consensus 13 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~~--- 80 (493)
..|+..+...|+ .+.|+.+|+++...++..+......++..+...++ --+|.+++.+.++. ...+ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 444554444555 47788888888776522221112223333322222 12445555444321 0111 110
Q ss_pred -------hHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 043480 81 -------TYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMI 152 (493)
Q Consensus 81 -------~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (493)
....=.+.+...|++ +.|+++-++.+.. .+-+..+|..|..+|...|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~-----------elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDY-----------ELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcH-----------HHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 111112334456666 4555555555554 34456778888888888888888887777764
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.98 E-value=1.9 Score=29.03 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 388 TAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 388 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555555555555555543
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.78 E-value=7.4 Score=35.35 Aligned_cols=256 Identities=9% Similarity=0.055 Sum_probs=136.5
Q ss_pred cCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH----Hcc
Q 043480 208 TGRIRRAMAIKSFMKWN-----GCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGL----CNS 278 (493)
Q Consensus 208 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 278 (493)
.++++.|++.+-.+.+. ...........++..|...++++...+.+..+.+..- ........+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~-qlk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHG-QLKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTT-TSHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhcC
Confidence 36788888776555432 2345567778888999999999988887766654321 1222333333322 222
Q ss_pred CCHHHHHHHHHHHHHcC-CCCC---------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-----HhHHHHHHH
Q 043480 279 NQLDKAYMFMVKKMEAK-GLRD---------KVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELD-----VVTFTILIK 343 (493)
Q Consensus 279 ~~~~~a~~~~~~~~~~~-~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~ 343 (493)
...+.... ......- .... ......|...+...|++.+|.+++..+...-...+ ...+...++
T Consensus 108 ~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 32222111 1111110 0001 11234567777888888888888888764311111 234566677
Q ss_pred HHHHcCCHHHHHHHHHHHHh----CCCCCC--HHhHHHHHHHHHccCCHhHHHHHHHHHHhC-CCCCCHhhHH----HHH
Q 043480 344 AFLREGSSAMAEKLLNQMRG----MNLSPD--RILYTTIIDCLCKSREIGTAYGVFLDMVEQ-GITPDVISYN----ALI 412 (493)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~----~l~ 412 (493)
.|...+++..|..++..+.. ...+|+ ...+...+..+...+++.+|...|.++.+. ...-+...+. .++
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v 265 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIV 265 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 78888888888888877642 221222 235566677777788888888877777542 0111222221 122
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHH
Q 043480 413 NGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQE--KKLELACRLWDQM 466 (493)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~ 466 (493)
.+..-.+....-..++.......--++...+..++.+|... .+++.+.+.++..
T Consensus 266 ~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 266 YFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 22222222222223333332221224567777777777653 4566655554433
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.59 E-value=2.2 Score=28.81 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=53.2
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 420 RVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAI 485 (493)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 485 (493)
|.=+..+-++.+...++-|++.+....+++|.+.+|+..|.++++-.+.+- .....+|..+++-+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHHH
Confidence 455677888888888899999999999999999999999999999998763 23345677776654
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.53 E-value=7.9 Score=35.18 Aligned_cols=244 Identities=12% Similarity=0.068 Sum_probs=126.7
Q ss_pred cCChHHHHHHHHHHHHC-----CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH----HHc
Q 043480 243 EVMLDEAEKLVMEMESC-----GIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAF----CKG 313 (493)
Q Consensus 243 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 313 (493)
.|+++.|.+.+..+.+. +...+......++..|...|+++...+.+..+....+. .......+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 36788888777666532 23445566777888888889888887766655543322 222223333322 222
Q ss_pred CCHHHHH--HHHHHHHH--cC-CCc---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCC---HHhHHHHHHHH
Q 043480 314 GQTRRAY--KLFEGMRR--RG-IEL---DVVTFTILIKAFLREGSSAMAEKLLNQMRG--MNLSPD---RILYTTIIDCL 380 (493)
Q Consensus 314 ~~~~~a~--~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~---~~~~~~l~~~~ 380 (493)
...+... .+.+.... .| +-. .......|...+...|++.+|..++..+.. .+..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2222111 11111110 00 111 111234566677778888888888887763 221111 23556667777
Q ss_pred HccCCHhHHHHHHHHHHh----CCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHH----HHHHHH
Q 043480 381 CKSREIGTAYGVFLDMVE----QGITPD--VISYNALINGLCKSSRVSEAMHLYEEMQIR-GAHPDEVTF----KLLIGG 449 (493)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~----~~l~~~ 449 (493)
...+++..|..+++++.. ....|+ ...+...+..+...+++.+|-+.|.++.+. ....|...+ ..++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 778888888888777642 211222 134556666667778888877777666431 111122222 222223
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 043480 450 LVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHL 487 (493)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 487 (493)
..-.+....-..++........-++...+..++++|..
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~ 305 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTT 305 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHh
Confidence 33333444444444444444333455666666666654
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.37 E-value=1.2 Score=33.40 Aligned_cols=56 Identities=7% Similarity=-0.079 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCC-CCcCh-------hhHHHHHHHHhccCChhhHHHHH
Q 043480 47 YNRFIGVLIRHSRFDLVQFYYQQMHPLG-FSLTP-------FTYSRFISGLCEVKNFTLINILL 102 (493)
Q Consensus 47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~ 102 (493)
+..-+..+...|.|+.|+-+..-+.... ..|+. .++..+.+++...+++..|...+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y 86 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKY 86 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3334555666667776666665544321 11221 24455566666777775555544
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.21 E-value=1.6 Score=42.36 Aligned_cols=49 Identities=12% Similarity=0.054 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhch
Q 043480 439 DEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQD 489 (493)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 489 (493)
+..-|..|.....+.+++++|.+.|+..+.. +-+...+..|++-|...+
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 5666889999999999999999999999975 568899999999997755
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.06 E-value=3.4 Score=30.11 Aligned_cols=74 Identities=18% Similarity=0.166 Sum_probs=44.4
Q ss_pred CCCHhhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043480 402 TPDVISYNALINGLCKSSRV---SEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTV 477 (493)
Q Consensus 402 ~p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 477 (493)
.|+..+--.+..++.++.+. .+++.+++.+...+..-.......|.-++.+.|++++|++..+.+++. .|+..-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHH
Confidence 45555555566666666543 356666766665432223455556666777777777777777777764 555433
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.73 E-value=0.9 Score=34.14 Aligned_cols=89 Identities=7% Similarity=-0.099 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCC-CCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHhccCC--------
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSN-CRVFS-------IDYNRFIGVLIRHSRFDLVQFYYQQMHPLG-------- 74 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------- 74 (493)
++..-++.+...|.++.|+-+.+.+.... ..++. .++..+..++...|+|..|...|++.++..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45566888999999999999988765432 12221 145667789999999999999999863310
Q ss_pred ----------------CCcChhhHHHHHHHHhccCChhhHH
Q 043480 75 ----------------FSLTPFTYSRFISGLCEVKNFTLIN 99 (493)
Q Consensus 75 ----------------~~~~~~~~~~ll~~~~~~~~~~~a~ 99 (493)
...+...--.+..||.+.++++.|+
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai 142 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI 142 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence 0111234445778889999994443
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.13 E-value=3.9 Score=29.32 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043480 388 TAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLI 447 (493)
Q Consensus 388 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 447 (493)
+..+-++.+....+.|++.+..+.+++|.+.+|+..|.++|+-...+ ..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34444555555556666666666666666666666666666666443 223344454444
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.67 E-value=4.3 Score=29.10 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=52.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 420 RVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAI 485 (493)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 485 (493)
|.=+..+-++.+...++-|++.+....+++|.+.+|+..|.++++-.+.+- .+...+|.-+++-+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqEl 132 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 132 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHHH
Confidence 334567777788888899999999999999999999999999999998862 33355677776654
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.62 E-value=3.9 Score=29.37 Aligned_cols=68 Identities=7% Similarity=-0.014 Sum_probs=37.3
Q ss_pred CcchhhHHHHHHHHHHcCCh---hHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 043480 6 GAQRLIYRAQISNLVKAGLI---DQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL 73 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (493)
.+++.+-..++-++++..+. .+++.+++.+.+.++......+..+.-++.+.|++++|++..+.+++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34445555555556665543 345666666665442122333444555666667777777666666654
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.55 E-value=2.2 Score=35.09 Aligned_cols=54 Identities=11% Similarity=0.146 Sum_probs=33.7
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 379 CLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
...+.|++++++.....-++.. +-|...=..|+..+|-.|+++.|.+-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3455666777766666666552 34555555666666777777777666666655
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.49 E-value=18 Score=37.71 Aligned_cols=148 Identities=11% Similarity=0.080 Sum_probs=97.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C--------------
Q 043480 304 NTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM----N-------------- 365 (493)
Q Consensus 304 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-------------- 365 (493)
..++..+...+..+.+.++..-. +.++...-.+..++...|++++|...|.+.... .
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34555666677777666544332 224444455667788889999998888764310 0
Q ss_pred ----CCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 043480 366 ----LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD----VISYNALINGLCKSSRVSEAMHLYEEMQIRGAH 437 (493)
Q Consensus 366 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 437 (493)
...-..-|..++..+.+.+.++.+.++-...++...+-+ ...|..+.+++...|++++|-..+-.+.+...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 011123567788888888888888888877775421112 12578888999999999999998888876533
Q ss_pred CCHHHHHHHHHHHHhcCCHHH
Q 043480 438 PDEVTFKLLIGGLVQEKKLEL 458 (493)
Q Consensus 438 p~~~~~~~l~~~~~~~g~~~~ 458 (493)
-...+..|+..++..|..+.
T Consensus 970 -r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHH
T ss_pred -HHHHHHHHHHHHHhCCChhh
Confidence 35667777777776665443
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.77 E-value=7.4 Score=28.37 Aligned_cols=67 Identities=13% Similarity=-0.013 Sum_probs=36.6
Q ss_pred CCCHHhHHHHHHHHHccCC---HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 367 SPDRILYTTIIDCLCKSRE---IGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
.|+..+--.+..++.+..+ ..++..+++.+...+..-.....-.|.-++.+.|++++|.++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3555555555555555543 334566666665532111233344455566677777777777777666
No 257
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=85.88 E-value=31 Score=34.62 Aligned_cols=269 Identities=10% Similarity=0.010 Sum_probs=144.5
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHhccCchhHHHHHHHHHHhCCC-------CCChhhHHHH--HH
Q 043480 135 LCKAKEFDKAVQAWEHMIENGIKPDN--KACAALVVGLCGDGKVDLAYELTVGAMKGKV-------EFGVLIYNAL--IS 203 (493)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l--~~ 203 (493)
....|+.++++.+++.....+...+. ..=..+.-+....|..+++...+...+...- .+....-..+ ..
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44566677777766665532101122 2223333444555555567777776664221 0111111222 22
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHH--HHHHccC
Q 043480 204 GFCRTGRIRRAMAIKSFMKWNGCEPDLVTYN--AILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLL--KGLCNSN 279 (493)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~ 279 (493)
+|.-.++ +++.+.+..+.... .+...... .+...+.-.|+.+....++..+.+.. +..+...+. -++...|
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 2333344 45566666655432 11111122 23334556788888888888777632 333333333 3444678
Q ss_pred CHHHHHHHHHHHHHcCCCCChhh-HH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHH
Q 043480 280 QLDKAYMFMVKKMEAKGLRDKVS-YN---TVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAE 355 (493)
Q Consensus 280 ~~~~a~~~~~~~~~~~~~~~~~~-~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 355 (493)
+.+.+..+.+.+... .++.. |. ++.-+|+..|+.....++++.+... ...+......+.-++...|+.+.+.
T Consensus 539 ~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 539 RQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp CGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred ChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 888887777776653 23332 32 3345667788988887799888865 2223333333444455577777778
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHccCCH-hHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 043480 356 KLLNQMRGMNLSPDRILYTTIIDCLCKSREI-GTAYGVFLDMVEQGITPDVISYNALINGLC 416 (493)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 416 (493)
++++.+.+.+ .|....-..+.-+....|.. .++.+++..+.. .++..+-...+.++.
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 8887776654 56665555555555555554 578888888875 345544433443443
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.23 E-value=17 Score=30.98 Aligned_cols=93 Identities=6% Similarity=-0.090 Sum_probs=46.7
Q ss_pred HHHHhcCChhHHHHH----HHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhh
Q 043480 52 GVLIRHSRFDLVQFY----YQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVT 127 (493)
Q Consensus 52 ~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 127 (493)
..+.+.|++..|-++ .+-..+.+.+++......++..+.....-+..+ ....+.|+..-.+.-.. ..-++..
T Consensus 61 ~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r---~~fi~~ai~WS~~~g~~-~~Gdp~L 136 (312)
T 2wpv_A 61 LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNL---KDVITGMNNWSIKFSEY-KFGDPYL 136 (312)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTH---HHHHHHHHHHHHHTSSC-TTCCHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchH---HHHHHHHHHHHhhcCCC-CCCCHHH
Confidence 345566666555443 333344466777777777777665543222111 00112222221111000 2235666
Q ss_pred HHHHHHHHhccCCHHHHHHHH
Q 043480 128 YTIVIDGLCKAKEFDKAVQAW 148 (493)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~ 148 (493)
...+...|.+.|++.+|..-|
T Consensus 137 H~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 137 HNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHH
Confidence 777777777777777776655
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.99 E-value=7.4 Score=35.19 Aligned_cols=62 Identities=6% Similarity=-0.132 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhcc
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSN--CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHP 72 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 72 (493)
+...++..|.+.|+++.|.+.|.++.... ...-...+-..++.+...+++..+...+.++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45678999999999999999999987642 233355677788889999999999988888754
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.94 E-value=18 Score=31.09 Aligned_cols=173 Identities=13% Similarity=0.077 Sum_probs=87.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH----HHhccCCCCcChhhHHHHHH
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYY----QQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~ll~ 87 (493)
|..+..-|.+++++++|++++-. -...+.+.|+...|-++- +-..+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~---------------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS---------------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH---------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34444445555555555554332 223445566665544443 33444566777777777777
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALV 167 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 167 (493)
.+.....-+-.+ ....+.|+..-.+. .....-|+.....+...|.+.+++.+|..-| +. |-.++...+..++
T Consensus 103 L~~~~~~~~p~r---~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~--il--g~~~s~~~~a~mL 174 (336)
T 3lpz_A 103 CLRLFQPGEPVR---KRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHL--VL--GTKESPEVLARME 174 (336)
T ss_dssp HHTTSCTTCHHH---HHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH--TT--SCTTHHHHHHHHH
T ss_pred HHHhCCCCCcHH---HHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHH--Hh--cCCchHHHHHHHH
Confidence 776655422111 11113333332221 1113346667777778888888888887766 22 3233345665555
Q ss_pred HHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 168 VGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
.-+...+...++- .. ....+-.|...++...|..+++...
T Consensus 175 ~ew~~~~~~~e~d--------------lf-iaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 175 YEWYKQDESHTAP--------------LY-CARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHTSCGGGHH--------------HH-HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCccHH--------------HH-HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4443333222111 11 1122334556777777777666554
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.80 E-value=8.4 Score=34.82 Aligned_cols=98 Identities=12% Similarity=-0.066 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHh---CCCCCCHhh--H
Q 043480 336 VTFTILIKAFLREGSSAMAEKLLNQMRGM--NLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVE---QGITPDVIS--Y 408 (493)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~--~ 408 (493)
.+...+...|.+.|+++.|.+.+.++... +...-...+-.+++.+...+++..+...+.++.. .+-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35677888888889999999888888763 2233456777788888888888888888887753 222222211 1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 409 NALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 409 ~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
..-...+...+++..|.+.|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1112223456788888887777654
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.62 E-value=2.1 Score=35.25 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=49.2
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL 73 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (493)
+....+.|++++|+.....-++.. |.|...-..++..++-.|+++.|.+-++...+.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345678899999999999988886 788888888999999999999999888887765
No 263
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=82.23 E-value=35 Score=32.46 Aligned_cols=116 Identities=9% Similarity=-0.002 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhH----HHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 043480 139 KEFDKAVQAWEHMIENGIKPDNKAC----AALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRA 214 (493)
Q Consensus 139 ~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 214 (493)
.+.+.|...+....... ..+.... ..+.......+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 47888988888876543 2233222 223333344453556666666655432 3333344455556678999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 043480 215 MAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMES 258 (493)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (493)
...|+.|.... .....-.--+.+++...|+.++|..+|+.+.+
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99998886532 11233233445667778999999999988864
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.26 E-value=19 Score=28.11 Aligned_cols=56 Identities=21% Similarity=0.200 Sum_probs=40.3
Q ss_pred cCCHhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 043480 383 SREIGTAYGVFLDMVEQGITPD-VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP 438 (493)
Q Consensus 383 ~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 438 (493)
.++..++.++|..|..+|+--. ...|......+...|++.+|..+|+..++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4446688888888877655433 4556777777778888888888888888776666
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.79 E-value=33 Score=29.46 Aligned_cols=167 Identities=10% Similarity=0.080 Sum_probs=88.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHH----HHHHHcCCCcCHhHHHHHHH
Q 043480 268 YNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLF----EGMRRRGIELDVVTFTILIK 343 (493)
Q Consensus 268 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~ 343 (493)
|.++..-|.+.+++++|++++..-.. .+.+.|+...+.++- +...+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34445557777888888776544322 234445554444333 44455667777777666766
Q ss_pred HHHHcCCHH-HHHHHHHHHH----hCC--CCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 043480 344 AFLREGSSA-MAEKLLNQMR----GMN--LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLC 416 (493)
Q Consensus 344 ~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 416 (493)
.+.....-+ .=.++.+.+. +.| ..-++..-..+...|.+.+++.+|...|- . |-.+....+..++.-+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHH
Confidence 665544311 1122222222 111 23456666778888888888888877762 2 32333456655555554
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 417 KSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
..+...++--+ .-..++ -|.-.++...|..+++...+
T Consensus 179 ~~~~~~e~dlf--------------iaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 179 KQDESHTAPLY--------------CARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTSCGGGHHHH--------------HHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCccHHHH--------------HHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 44432222211 222222 34556677777776666554
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=75.27 E-value=58 Score=31.01 Aligned_cols=310 Identities=12% Similarity=0.061 Sum_probs=143.4
Q ss_pred HHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh--cCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCCh
Q 043480 18 NLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIR--HSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNF 95 (493)
Q Consensus 18 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 95 (493)
...+.|+++.+..+...+.. .+. ..|-..-..-.. .....+...++.+-... +.....-...+..+.+.+++
T Consensus 15 ~a~~~~~~~~~~~l~~~l~~--~pL--~~yl~y~~l~~~l~~~~~~ev~~Fl~~~~~~--p~~~~Lr~~~l~~l~~~~~w 88 (618)
T 1qsa_A 15 QAWDNRQMDVVEQMMPGLKD--YPL--YPYLEYRQITDDLMNQPAVTVTNFVRANPTL--PPARTLQSRFVNELARREDW 88 (618)
T ss_dssp HHHHTTCHHHHHHHSGGGTT--STT--HHHHHHHHHHHTGGGCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHhhcC--CCc--HHHHHHHHHHhCcccCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHhCCCH
Confidence 35667888888877666532 122 222211111111 22455555555553221 22223334455566666666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCc
Q 043480 96 TLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGK 175 (493)
Q Consensus 96 ~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (493)
. ..+. .... .+.+...-.....+....|+..+|......+-..|. .....+..++..+.+.|.
T Consensus 89 ~-----------~~l~----~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 89 R-----------GLLA----FSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGK 151 (618)
T ss_dssp H-----------HHHH----HCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTC
T ss_pred H-----------HHHH----hccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCC
Confidence 2 2222 2111 234555555666777778887777777766655542 234456666666665554
Q ss_pred hhH--HHHHHHHHHhCC-----------CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHH
Q 043480 176 VDL--AYELTVGAMKGK-----------VEFGVL-IYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVT---YNAILN 238 (493)
Q Consensus 176 ~~~--a~~~~~~~~~~~-----------~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~ 238 (493)
+.. ...-++.+...+ ++++.. ....++..+.. ...+...... +.++... +...+.
T Consensus 152 lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~-----~~~~~~~~~~~~~~~~ 223 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART-----TGATDFTRQMAAVAFA 223 (618)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH-----SCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhc-----cCCChhhHHHHHHHHH
Confidence 432 222222222222 011110 01111111111 1111111110 1222221 111222
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCChhhHH----HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC
Q 043480 239 YYCDEVMLDEAEKLVMEMESCGIEPDVYSYN----QLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGG 314 (493)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 314 (493)
-+.+ .+.+.|...+....+.. ..+..... .+.......+...++...+....... .+.......+....+.|
T Consensus 224 rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 224 SVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTG 299 (618)
T ss_dssp HHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHT
T ss_pred HHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCC
Confidence 2233 36777888887775433 12322222 22223333442445555555544332 23323333344445668
Q ss_pred CHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 043480 315 QTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRG 363 (493)
Q Consensus 315 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 363 (493)
+++.|...|..|..... ......--+..++...|+.++|..+|..+.+
T Consensus 300 d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888888877765311 1233334455566777888888888887764
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=75.09 E-value=38 Score=28.81 Aligned_cols=115 Identities=9% Similarity=-0.058 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHh
Q 043480 47 YNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVV 126 (493)
Q Consensus 47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 126 (493)
|.++..-|.+++++++|++++..-. ..+.+.|+...|. +.|.-+.+-+.+.+.+++..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~-------DLa~llvev~~~~~~~~~~~ 93 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGT-------DLIFYLLEVYDLAEVKVDDI 93 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHH-------HHHHHHHHHHHHTTCCCSHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHH-------HHHHHHHHHHHHcCCCCCHH
Confidence 4445555666777777776654432 2344456666665 55666666777777888877
Q ss_pred hHHHHHHHHhccCCHH-HHHHHHHHHH----HCC--CCCCHHhHHHHHHHHhccCchhHHHHHH
Q 043480 127 TYTIVIDGLCKAKEFD-KAVQAWEHMI----ENG--IKPDNKACAALVVGLCGDGKVDLAYELT 183 (493)
Q Consensus 127 ~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 183 (493)
....++..+.....-+ .-.++.++++ +.| ..-+...+..+...|.+.|++.+|...|
T Consensus 94 ~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 94 SVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 7777777665533211 1122333332 221 1225556666666677777776666654
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=72.93 E-value=32 Score=26.91 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=41.2
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC
Q 043480 348 EGSSAMAEKLLNQMRGMNL-SPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITP 403 (493)
Q Consensus 348 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 403 (493)
.++...+..+|..|...++ .--...|......+...|++.+|..+|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4446778888888876554 3445667777777788888888888888888776666
No 269
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.32 E-value=28 Score=28.69 Aligned_cols=23 Identities=9% Similarity=0.024 Sum_probs=11.6
Q ss_pred ccCChHHHHHHHHHHHHCCCCCC
Q 043480 242 DEVMLDEAEKLVMEMESCGIEPD 264 (493)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~ 264 (493)
..+.......+++.+.+.|..++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HccccchHHHHHHHHHHcCCCCC
Confidence 34444444555555565554443
No 270
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=70.47 E-value=27 Score=25.03 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=35.7
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCC
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR--VSEAMHLYEEMQIRGAHP 438 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p 438 (493)
....++.-|...|+.++|...++++..-.+. ...+...+..++-+.++ .+....++..+...|+-+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3456777777788888888888776411000 11223333344444332 345566666666555443
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=70.27 E-value=22 Score=23.94 Aligned_cols=79 Identities=13% Similarity=0.006 Sum_probs=39.0
Q ss_pred CchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 043480 174 GKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLV 253 (493)
Q Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 253 (493)
...++|..+-+.+...+. ...+-..-+..+...|++++|..+.+.+. .||...|.++.. .+.|..+++..-+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 344555555555444331 12222222344555666666666554333 566666655443 2556666666655
Q ss_pred HHHHHCC
Q 043480 254 MEMESCG 260 (493)
Q Consensus 254 ~~~~~~~ 260 (493)
..+..+|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 5555544
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=68.95 E-value=24 Score=23.83 Aligned_cols=79 Identities=11% Similarity=-0.008 Sum_probs=39.1
Q ss_pred CchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 043480 174 GKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLV 253 (493)
Q Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 253 (493)
...++|..+-+.+...+. ...+-..-+..+...|++++|..+.+.+. .||...|.++.. .+.|..+++..-+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 344555555555444331 22222222344555666666666654443 566666655443 2455555555555
Q ss_pred HHHHHCC
Q 043480 254 MEMESCG 260 (493)
Q Consensus 254 ~~~~~~~ 260 (493)
..+..+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 5555444
No 273
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.78 E-value=42 Score=30.90 Aligned_cols=63 Identities=8% Similarity=0.117 Sum_probs=48.8
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh------hhHH-HHHHHHHhcCChhHHHHHHHHhccC
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS------IDYN-RFIGVLIRHSRFDLVQFYYQQMHPL 73 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (493)
-..++|.+++.|...+.++.|.++.....- |.+. ..|. .+++.+.-+++|.+|.+.+......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~f---P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEY---PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCS---CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcC---CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356789999999999999999999998752 2221 2233 3467788899999999999998765
No 274
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=64.33 E-value=24 Score=26.17 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=37.4
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCC
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR--VSEAMHLYEEMQIRGAHP 438 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p 438 (493)
....++.-|...|+.++|...++++..-.+. ...+...+..++-+.++ .+.+..++..+...++-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4566777888888888888888887421000 11223334444444322 344666777776655543
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=63.89 E-value=45 Score=27.43 Aligned_cols=186 Identities=12% Similarity=0.105 Sum_probs=84.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcC---hhhHHHHHHHHh
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLT---PFTYSRFISGLC 90 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~ 90 (493)
..+...++.|+++-...+++.-...+...+..-+ ..+...+..|+.+-+..+++. |..++ ..-.+. +...+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~-L~~A~ 80 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSREDIVELLLRH----GADPVLRKKNGATP-FLLAA 80 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCCH-HHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHHHHHHHHHc----CCCCcccCCCCCCH-HHHHH
Confidence 3455677888887666665542211111111112 344455667777666555544 33322 222222 22333
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHh-----
Q 043480 91 EVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVV---TYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKA----- 162 (493)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----- 162 (493)
..|+. ++++.+.+.|..++.. .++. +...+..|+.+ +.+.+.+.|..++...
T Consensus 81 ~~~~~---------------~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~ 140 (285)
T 1wdy_A 81 IAGSV---------------KLLKLFLSKGADVNECDFYGFTA-FMEAAVYGKVK----ALKFLYKRGANVNLRRKTKED 140 (285)
T ss_dssp HHTCH---------------HHHHHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHH
T ss_pred HcCCH---------------HHHHHHHHcCCCCCccCcccCCH-HHHHHHhCCHH----HHHHHHHhCCCcccccccHHH
Confidence 44554 4555566666555432 2222 33344556654 4445555554443210
Q ss_pred -------HHHHHHHHhccCchhHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043480 163 -------CAALVVGLCGDGKVDLAYELTVGAMKGKVEFG---VLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPD 229 (493)
Q Consensus 163 -------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 229 (493)
-...+...+..|+.+.+..+++.. +..++ ..-.+. +...+..+......++.+.+.+.|..++
T Consensus 141 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 141 QERLRKGGATALMDAAEKGHVEVLKILLDEM---GADVNACDNMGRNA-LIHALLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCH-HHHHHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHhhccCCCcHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCH-HHHHHHccccchHHHHHHHHHHcCCCCC
Confidence 012233344556655544444321 22222 222222 3334445554445566666666665444
No 276
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=62.21 E-value=40 Score=24.09 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC--hhHHHHHHHHhccCC
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSR--FDLVQFYYQQMHPLG 74 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~ 74 (493)
...++.-|...|+.++|.+.++++.... .....+...+..++-+.++ .+....++..+...|
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~ 73 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 73 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 4578899999999999999999985321 1112333334444444332 355667777776655
No 277
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=61.51 E-value=58 Score=25.79 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=24.7
Q ss_pred HHHHcCChhHHHHHHHHHhhCCCCCChh--hHHHHHHHHHhcCChhHHHHHHHHh
Q 043480 18 NLVKAGLIDQAVHVFDEMTQSNCRVFSI--DYNRFIGVLIRHSRFDLVQFYYQQM 70 (493)
Q Consensus 18 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~ 70 (493)
..++.|+++....+++. |..++.. .-...+...+..|+.+-+..+++.-
T Consensus 15 ~A~~~g~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 15 KATQYGIYERCRELVEA----GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHc----CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 35667777666555543 2222111 1112344556677776666555543
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=61.13 E-value=83 Score=27.38 Aligned_cols=66 Identities=12% Similarity=0.057 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--hHHHHHHHHHHHHCCCCCC
Q 043480 198 YNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVM--LDEAEKLVMEMESCGIEPD 264 (493)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 264 (493)
.+.++.-|...++.++|.+.++++...... ...+...+..++-+.++ .+...+++..+.+.|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 356777888888999999888888621111 12223333444443332 3456667777776665433
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=60.99 E-value=48 Score=24.54 Aligned_cols=50 Identities=18% Similarity=0.099 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 043480 389 AYGVFLDMVEQGITPD-VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP 438 (493)
Q Consensus 389 a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 438 (493)
+.++|..|..+|+--. ...|......+...|++.+|.++|+..++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555554433222 2334444444445555555555555555444444
No 280
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=60.54 E-value=31 Score=25.58 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC--hhHHHHHHHHhccCC
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSR--FDLVQFYYQQMHPLG 74 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~ 74 (493)
...++.-|...|+.++|.+.++++.... .....+...+..++-+.++ .+.+..++..+...+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~ 75 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 75 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 4678899999999999999999985321 1112233333444444222 345667777776555
No 281
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=59.16 E-value=40 Score=26.51 Aligned_cols=67 Identities=10% Similarity=0.118 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHhhCCCCCChhh--------HHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCC
Q 043480 25 IDQAVHVFDEMTQSNCRVFSID--------YNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKN 94 (493)
Q Consensus 25 ~~~A~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 94 (493)
++.|+-+|+.+.+.- +.+... -...+.+|.+.|.+++|.+++++.... .++..-...-+....+.++
T Consensus 88 LESAl~v~~~I~~e~-~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~--~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEF-TLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK--DPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--CGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC--CCCchHHHHHHHHHHhccC
Confidence 467888888887643 211111 123456789999999999999999775 3444333333333333333
No 282
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=58.43 E-value=1.1e+02 Score=31.21 Aligned_cols=28 Identities=11% Similarity=0.004 Sum_probs=19.8
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 127 TYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
-|..++..+-+.+.++.+.++-+..++.
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 5667777777777777777777666653
No 283
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=58.09 E-value=39 Score=26.94 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 043480 387 GTAYGVFLDMVEQGITPD-VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP 438 (493)
Q Consensus 387 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 438 (493)
+.+..+|..|..+|+--. ...|......+...|++.+|..+|+..++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345556666665544322 3345555555556666666666666665555554
No 284
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=57.96 E-value=65 Score=25.10 Aligned_cols=109 Identities=10% Similarity=-0.025 Sum_probs=51.8
Q ss_pred CCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043480 368 PDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLI 447 (493)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 447 (493)
++..+-...+.++...++.+ +...+..+.+ .++..+-...+.++...|+.+ +...+..+.+ .++..+-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 44444445555555555432 2233333332 244444445555555555532 3333434432 24555555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 043480 448 GGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQ 488 (493)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 488 (493)
.++.+.+. .++...+..+.+. ++..+-...+.++...
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred HHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 66666665 3444445555442 4555555555555443
No 285
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=57.38 E-value=1e+02 Score=27.27 Aligned_cols=28 Identities=4% Similarity=-0.070 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 195 VLIYNALISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
......|...|.+.|+.++...++....
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455567777777777777777776553
No 286
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=56.35 E-value=1e+02 Score=26.85 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 408 YNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKK--LELACRLWDQMMEKGFTLDKTVSAALIEAI 485 (493)
Q Consensus 408 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 485 (493)
...++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+...+++..+...|+-+.......+.+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 577888899999999999999998642122 24445555566665443 456888888888888777766666666555
Q ss_pred hh
Q 043480 486 HL 487 (493)
Q Consensus 486 ~~ 487 (493)
..
T Consensus 299 ~~ 300 (358)
T 3eiq_C 299 NE 300 (358)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 287
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=55.57 E-value=69 Score=24.68 Aligned_cols=139 Identities=12% Similarity=0.004 Sum_probs=75.2
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 043480 334 DVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALIN 413 (493)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 413 (493)
+...-...+.++...++.+....+. .+.. .++..+-...+.++...++.+ +...+..+.. .++..+-...+.
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 129 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERAVEPLI-KALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAF 129 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 4444444555555555543332332 2332 355556566666666666643 3333334443 345555556666
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 043480 414 GLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQ 488 (493)
Q Consensus 414 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 488 (493)
++...|+. ++...+..+.. .++..+-...+.++.+.|+ .++...+..+.+. ++..+-...+.++.+-
T Consensus 130 aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 130 ALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHHC
T ss_pred HHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHHH
Confidence 66666654 34444444443 3566677777777777776 4455555556543 4566666666665544
No 288
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=55.28 E-value=50 Score=24.72 Aligned_cols=54 Identities=11% Similarity=0.046 Sum_probs=34.5
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCC--ChhhHHHHHH------HHHhcCChhHHHHHHHHhcc
Q 043480 19 LVKAGLIDQAVHVFDEMTQSNCRV--FSIDYNRFIG------VLIRHSRFDLVQFYYQQMHP 72 (493)
Q Consensus 19 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~ 72 (493)
+...|++-+|-++|+.+......+ ....|..||+ ...+.|+...|..++.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444588888888888877664334 3444555555 12356777777777777654
No 289
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=54.46 E-value=69 Score=26.61 Aligned_cols=205 Identities=8% Similarity=0.001 Sum_probs=97.6
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHh---h
Q 043480 51 IGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVV---T 127 (493)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~ 127 (493)
+...+..|+.+-+..+++.-. .++..--.+.+...+..|+. ++++.+.+.|..++.. .
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~----~~~~~~g~t~L~~A~~~g~~---------------~~v~~Ll~~ga~~~~~d~~g 95 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGA----LKNLLENEFPLHQAATLEDT---------------KIVKILLFSGLDDSQFDDKG 95 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTG----GGSCCTTCCHHHHHTTSSSC---------------HHHHHHHHTTCCTTCCCTTS
T ss_pred HHHHHHcCCHHHHHHHHhCCC----CCCCCCCCCHHHHHHHcCCH---------------HHHHHHHHCCCCCCCcCCCC
Confidence 334456778777666665432 22221112234444556666 3445555556554432 2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH---HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCC-ChhhHHHHHH
Q 043480 128 YTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN---KACAALVVGLCGDGKVDLAYELTVGAMKGKVEF-GVLIYNALIS 203 (493)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 203 (493)
++. +...+..|+.+-+.-+++ .|..++. ..+...+...+..|+.+-+.-+ .+.+..+ +...-...+.
T Consensus 96 ~t~-L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~g~t~L~ 166 (285)
T 3kea_A 96 NTA-LYYAVDSGNMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF----LSEIPSTFDLAILLSCIH 166 (285)
T ss_dssp CCH-HHHHHHTTCHHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHH----HTTSCTTCCCSTHHHHHH
T ss_pred CcH-HHHHHHcCCHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCccccccCCccHHH
Confidence 222 334455666655444443 3433332 1212334444556665544433 3433222 2213345566
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH
Q 043480 204 GFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDK 283 (493)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 283 (493)
..+..|+.+-+.-+++.-..... .+....+..+...+..|+. ++.+.+.+.|..++.... .-...|+.+-
T Consensus 167 ~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~-----~a~~~~~~~i 236 (285)
T 3kea_A 167 ITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANL-----ENVLLDDAEI 236 (285)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTG-----GGGTTTCHHH
T ss_pred HHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCh-----hhhhcCCHHH
Confidence 66778888777766665443221 1111111112223344554 445556666766655442 1244667666
Q ss_pred HHHHHHHHHH
Q 043480 284 AYMFMVKKME 293 (493)
Q Consensus 284 a~~~~~~~~~ 293 (493)
+..+++.-.+
T Consensus 237 v~~Ll~~g~~ 246 (285)
T 3kea_A 237 AKMIIEKHVE 246 (285)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHcCCC
Confidence 6555554443
No 290
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.35 E-value=63 Score=23.89 Aligned_cols=60 Identities=12% Similarity=0.146 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043480 422 SEAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAAL 481 (493)
Q Consensus 422 ~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 481 (493)
+++..+|..|...|+-- -+..|......+...|++++|.++++.-++.+-.|-...-...
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 142 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQY 142 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 44899999998887765 4788899999999999999999999999999888866555443
No 291
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=51.50 E-value=21 Score=21.71 Aligned_cols=46 Identities=7% Similarity=0.018 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRH 57 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 57 (493)
.++.++..+.+..-+++++..++++.+.| ..+...|..-++.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 56778888888888999999999999988 77777787777776654
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.18 E-value=82 Score=23.67 Aligned_cols=50 Identities=16% Similarity=0.190 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 043480 389 AYGVFLDMVEQGITPD-VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP 438 (493)
Q Consensus 389 a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 438 (493)
+..+|..|..+|+--. ...|......+...|++.+|.++|+..++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4455555555544322 2344455555555566666666666655555554
No 293
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=48.95 E-value=83 Score=23.65 Aligned_cols=51 Identities=10% Similarity=0.142 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCC-CCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC
Q 043480 354 AEKLLNQMRGMNL-SPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD 404 (493)
Q Consensus 354 a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 404 (493)
+..+|..|...++ .--...|......+-..|++.+|.++|+.-++.+-.|.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5567777776654 33455677777777778888888888888887766664
No 294
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=48.42 E-value=53 Score=24.63 Aligned_cols=45 Identities=4% Similarity=0.179 Sum_probs=19.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcCHhHHHHHHHHHHHcC
Q 043480 305 TVIEAFCKGGQTRRAYKLFEGMRRR--GIELDVVTFTILIKAFLREG 349 (493)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 349 (493)
.++..+...+.+-.|.++++.+.+. +...+..|.-.-+..+...|
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444555555555444 33334444333334444433
No 295
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=47.63 E-value=1.1e+02 Score=24.69 Aligned_cols=91 Identities=12% Similarity=0.118 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC--CCCC----CHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 043480 340 ILIKAFLREGSSAMAEKLLNQMRGM--NLSP----DRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALIN 413 (493)
Q Consensus 340 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 413 (493)
--+..+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+.+ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3466777788888888888766541 2121 1111222222222222223333344444 22 344555566667
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 043480 414 GLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 414 ~~~~~g~~~~a~~~~~~~~~ 433 (493)
.+.+.|+.++|.++|=+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 77777777777777766543
No 296
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=46.80 E-value=22 Score=29.01 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=35.1
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChh-------hHHHHHHHHH--hcCChhHHHHHHHHh
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSI-------DYNRFIGVLI--RHSRFDLVQFYYQQM 70 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~ 70 (493)
+...++.|+.+....+++.+.+.+...+.. -++.+..+.. +.|+.+-+..+++..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 344667899999888888776655444422 2334443332 568887777777764
No 297
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=46.51 E-value=90 Score=24.87 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC
Q 043480 353 MAEKLLNQMRGMNL-SPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITP 403 (493)
Q Consensus 353 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 403 (493)
.+..+|..|...++ .--...|......+...|++.+|..+|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45566666665544 2334556666666666677777777777666655455
No 298
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=45.74 E-value=96 Score=23.51 Aligned_cols=53 Identities=6% Similarity=-0.122 Sum_probs=34.7
Q ss_pred HHHHcCChhHHHHHHHHHhhCCCCCC-----------------hhhHHHHHHHHHhcCChhHHHHHHHHh
Q 043480 18 NLVKAGLIDQAVHVFDEMTQSNCRVF-----------------SIDYNRFIGVLIRHSRFDLVQFYYQQM 70 (493)
Q Consensus 18 ~~~~~g~~~~A~~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 70 (493)
+|-+..++..|+..++.+++..+..| ..-++.+...|...|+.++|+..+..-
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 56778899999999999986543322 122455556666666777766666543
No 299
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=45.02 E-value=61 Score=24.86 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=8.2
Q ss_pred HHHHHHHHHcCCCCC
Q 043480 425 MHLYEEMQIRGAHPD 439 (493)
Q Consensus 425 ~~~~~~~~~~~~~p~ 439 (493)
.++++.+.+.|..|+
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 455555555555543
No 300
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=44.19 E-value=93 Score=22.86 Aligned_cols=15 Identities=0% Similarity=0.023 Sum_probs=6.3
Q ss_pred ChhHHHHHHHHHHHc
Q 043480 420 RVSEAMHLYEEMQIR 434 (493)
Q Consensus 420 ~~~~a~~~~~~~~~~ 434 (493)
..-.|.++++.+.+.
T Consensus 41 ~~~sa~ei~~~l~~~ 55 (150)
T 2xig_A 41 THLSPEEITHSIRQK 55 (150)
T ss_dssp SCBCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh
Confidence 333444444444333
No 301
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=43.97 E-value=1.5e+02 Score=25.15 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 408 YNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKK--LELACRLWDQMMEKGFTLDKTVSAALIEAI 485 (493)
Q Consensus 408 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 485 (493)
...++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+...+++..+.+.|+-+.......+-+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 457788888999999999999998532111 23444455555555433 456778888888777766666655554444
Q ss_pred h
Q 043480 486 H 486 (493)
Q Consensus 486 ~ 486 (493)
.
T Consensus 248 ~ 248 (307)
T 2zu6_B 248 N 248 (307)
T ss_dssp H
T ss_pred H
Confidence 3
No 302
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=43.28 E-value=1.1e+02 Score=24.21 Aligned_cols=15 Identities=7% Similarity=0.058 Sum_probs=7.2
Q ss_pred HhcCChhHHHHHHHH
Q 043480 55 IRHSRFDLVQFYYQQ 69 (493)
Q Consensus 55 ~~~~~~~~a~~~~~~ 69 (493)
+..|+.+.+..+++.
T Consensus 17 ~~~g~~~~v~~Ll~~ 31 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNL 31 (241)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 344555544444443
No 303
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=42.57 E-value=25 Score=27.16 Aligned_cols=49 Identities=8% Similarity=0.192 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHhhCCCCCChhh----HHHHHHHHHhcCChhHHHHHHHHhccC
Q 043480 25 IDQAVHVFDEMTQSNCRVFSID----YNRFIGVLIRHSRFDLVQFYYQQMHPL 73 (493)
Q Consensus 25 ~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (493)
++.|+-+|+.+.+.-..+.... -...+.+|.+.|.+++|.+++++....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 4567777766654321111111 122345788999999999999987654
No 304
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=42.12 E-value=1.4e+02 Score=24.75 Aligned_cols=15 Identities=7% Similarity=0.259 Sum_probs=7.2
Q ss_pred HHHHHHHcCCCcCHh
Q 043480 322 LFEGMRRRGIELDVV 336 (493)
Q Consensus 322 ~~~~~~~~~~~~~~~ 336 (493)
+.+.+.+.|..++..
T Consensus 210 ~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 210 MLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHTTSCBCSTTT
T ss_pred HHHHHHHcCCCCCCC
Confidence 444445555554443
No 305
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=41.91 E-value=84 Score=22.91 Aligned_cols=34 Identities=6% Similarity=-0.017 Sum_probs=15.5
Q ss_pred HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 043480 386 IGTAYGVFLDMVEQGITPDVISYNALINGLCKSS 419 (493)
Q Consensus 386 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 419 (493)
.-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4455555555554443334444333344444444
No 306
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=41.68 E-value=1.2e+02 Score=23.57 Aligned_cols=62 Identities=15% Similarity=0.257 Sum_probs=36.7
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCC-----HHHHHHHHHHHHhCCCCCCHHhHH
Q 043480 312 KGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGS-----SAMAEKLLNQMRGMNLSPDRILYT 374 (493)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~ 374 (493)
+..+++.|+-++-+|.+.| .|....-..++.+.---|. ...|...++.....|.+--.....
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~La 92 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLA 92 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHH
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3467888888888888887 5555554555555444332 234555666666667544444443
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=41.47 E-value=1e+02 Score=22.48 Aligned_cols=35 Identities=11% Similarity=0.003 Sum_probs=14.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043480 418 SSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQ 452 (493)
Q Consensus 418 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 452 (493)
.+..-.|.++++.+.+.+...+..|..--++.+..
T Consensus 34 ~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 34 SMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp CSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 33344444455544444333343333333333333
No 308
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=41.40 E-value=1.2e+02 Score=23.50 Aligned_cols=54 Identities=15% Similarity=0.073 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCC-----HHHHHHHHHHHHhCCC
Q 043480 313 GGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGS-----SAMAEKLLNQMRGMNL 366 (493)
Q Consensus 313 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 366 (493)
..+++.|+-.+-+|++.|..|....-..++.+.---|. ...|...++.....|.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 46777777777777777665555544444444433332 2345555555555663
No 309
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=40.91 E-value=81 Score=24.90 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=11.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 043480 446 LIGGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 446 l~~~~~~~g~~~~a~~~~~~~~ 467 (493)
.+....+.|+.+-+..+++...
T Consensus 213 ~l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 213 ALDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC-
T ss_pred HHHHHHHcCcHHHHHHHHHhhh
Confidence 3444556666666555554433
No 310
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=40.83 E-value=1.1e+02 Score=22.55 Aligned_cols=59 Identities=10% Similarity=0.162 Sum_probs=28.5
Q ss_pred HHhCCCCCCHHhHHHHHHHHHccC-CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043480 361 MRGMNLSPDRILYTTIIDCLCKSR-EIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR 420 (493)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (493)
+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 4445555544322 2333333333 445566666666655444444444444555555554
No 311
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=40.49 E-value=1e+02 Score=22.16 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=31.7
Q ss_pred HHhCCCCCCHHhHHHHHHHHHccC-CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 043480 361 MRGMNLSPDRILYTTIIDCLCKSR-EIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRV 421 (493)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 421 (493)
+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4455655554432 3344444444 5566777777776665455555554455555555543
No 312
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=40.37 E-value=5.3 Score=27.94 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 043480 197 IYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEK 251 (493)
Q Consensus 197 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 251 (493)
.|...|...+.+++.+-|.++++-....| +...|.+.+-.|...=+++-+.+
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 44555666666677777777777766554 55666666666666555555443
No 313
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=39.10 E-value=49 Score=22.12 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=36.0
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHh-c-CChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHH
Q 043480 31 VFDEMTQSNCRVFSIDYNRFIGVLIR-H-SRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINI 100 (493)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 100 (493)
+++.+.+.| +.+-...=.+... + .+.++|.+++..+..+| +.+|..++.++...++...|..
T Consensus 26 vld~L~~~~----vlt~~~~e~I~~~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 26 LWDVLLSRE----LFRPHMIEDIQRAGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp THHHHHHTT----SSCHHHHHHHHTSTTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHcC----CCCHHHHHHHHhccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHHH
Confidence 666666666 2222222222222 2 46788888888887654 3467777887776666655543
No 314
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=37.47 E-value=2.2e+02 Score=25.22 Aligned_cols=296 Identities=12% Similarity=0.018 Sum_probs=155.8
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCC---CHHhHHHHHHHHhcc-CchhHHHHH----HHHHHhCCCC-CCh
Q 043480 126 VTYTIVIDGLCKAKEFDKAVQAWEHMIEN-GIKP---DNKACAALVVGLCGD-GKVDLAYEL----TVGAMKGKVE-FGV 195 (493)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~----~~~~~~~~~~-~~~ 195 (493)
.+...|...|.+.|+.++..+++...... +.-| .......++..+... +..+.-.++ +++....... ...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556888899999999998888876532 1112 224455677776553 333333333 3333332100 001
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCChHHHHHHHHHHHHC--CCCCChhhH
Q 043480 196 LIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPD-----LVTYNAILNYYCDEVMLDEAEKLVMEMESC--GIEPDVYSY 268 (493)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 268 (493)
..=..++..|...|++.+|.+++..+.+.--..| ...+..-+..|...+++.++...+...... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 1122678899999999999999888876311111 234556667888999999999999887532 232444332
Q ss_pred HHH----HHHHH-ccCCHHHHHHHHHHHHHcCCCCChh------hHHHHHHHHHHcCCHHHHHHHHH-HHHHcCCCcCHh
Q 043480 269 NQL----LKGLC-NSNQLDKAYMFMVKKMEAKGLRDKV------SYNTVIEAFCKGGQTRRAYKLFE-GMRRRGIELDVV 336 (493)
Q Consensus 269 ~~l----~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~ 336 (493)
..+ ...+. ..+++..|...|-+........... .|..+ .+.. .++..+.-.++. .....-..|...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl-~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIM-LGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHH-TTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHH-cCCHHHHHHHhccccccccCCccHH
Confidence 221 23455 7899999999888876543222211 22222 2222 233222222221 111111234555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 043480 337 TFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLC 416 (493)
Q Consensus 337 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 416 (493)
.+..++.++ ..+++.....+++.... .+..|......+-..+- .--...+.++.+ +-+..++..+...+.
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~-----~Ir~~~L~~i~~---pYsrIsl~~iA~~l~ 327 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYD-----TMLEQNLCRIIE---PYSRVQVAHVAESIQ 327 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHH-----HHHHHHHHHHHT---TCSEEEHHHHHHHHT
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHH-----HHHHHHHHHHhH---hhceeeHHHHHHHHC
Confidence 555566554 45677777666665543 23344432111110000 000111222221 224455666665554
Q ss_pred hcCChhHHHHHHHHHHHcC
Q 043480 417 KSSRVSEAMHLYEEMQIRG 435 (493)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~~ 435 (493)
- ..+++...+-+|+..|
T Consensus 328 l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 328 L--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp C--CHHHHHHHHHHHHHTT
T ss_pred c--CHHHHHHHHHHHHHCC
Confidence 3 5678888888887654
No 315
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=37.44 E-value=1.2e+02 Score=22.24 Aligned_cols=42 Identities=7% Similarity=0.243 Sum_probs=17.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHH
Q 043480 306 VIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLR 347 (493)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (493)
++..+...+.+-.|.++++.+.+.+...+..|.-..+..+..
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 73 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEK 73 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 333333333444445555555444433344443333333333
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.31 E-value=1.2e+02 Score=22.10 Aligned_cols=34 Identities=9% Similarity=0.059 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 043480 351 SAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSR 384 (493)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 384 (493)
.-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 37 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 37 HPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3344444444444332333333333333443333
No 317
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=35.95 E-value=1.6e+02 Score=23.18 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=39.0
Q ss_pred HHHHHH---HcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCC-----HHHHHHHHHHHHhCCCCCCHHh
Q 043480 306 VIEAFC---KGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGS-----SAMAEKLLNQMRGMNLSPDRIL 372 (493)
Q Consensus 306 l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~ 372 (493)
+|+++. +..+++.|+-++-+|.+.|..|....-..++.+.---|. ...|...++.....|.+--...
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~ 112 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFF 112 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 444443 346788888888888887766655555555555443332 3345556666666665443333
No 318
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=35.72 E-value=1e+02 Score=20.86 Aligned_cols=11 Identities=27% Similarity=0.299 Sum_probs=4.1
Q ss_pred cCCHHHHHHHH
Q 043480 348 EGSSAMAEKLL 358 (493)
Q Consensus 348 ~~~~~~a~~~~ 358 (493)
.|-.+++...+
T Consensus 81 lGl~s~le~rL 91 (115)
T 2uwj_G 81 LGLGAALDRRL 91 (115)
T ss_dssp TTCHHHHHHHH
T ss_pred cccHHHHHHHH
Confidence 33333333333
No 319
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=35.53 E-value=41 Score=20.03 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 043480 26 DQAVHVFDEMTQSNCRVFSIDYNRFIGVL 54 (493)
Q Consensus 26 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 54 (493)
++|.+.|-+|++..--++..+|...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45555555555433233345565555555
No 320
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=35.21 E-value=1.2e+02 Score=22.05 Aligned_cols=12 Identities=17% Similarity=0.457 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhC
Q 043480 353 MAEKLLNQMRGM 364 (493)
Q Consensus 353 ~a~~~~~~~~~~ 364 (493)
.|.++++.+.+.
T Consensus 35 ta~ei~~~l~~~ 46 (145)
T 3eyy_A 35 TPDDILGEVRKT 46 (145)
T ss_dssp CHHHHHHHHHTT
T ss_pred CHHHHHHHHHhh
Confidence 344444444433
No 321
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=35.17 E-value=71 Score=22.77 Aligned_cols=47 Identities=13% Similarity=0.031 Sum_probs=28.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRF 60 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 60 (493)
.++..+...+..-.|.++++.+.+.++..+..|-...+..+...|-.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34555555566667777777776665555555655566666665543
No 322
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.83 E-value=87 Score=19.82 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043480 421 VSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEK 454 (493)
Q Consensus 421 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 454 (493)
.-.+.++++.+.+.+...+..|..-.++.+...|
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3344445555544433334444444444444333
No 323
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=34.49 E-value=1.1e+02 Score=20.78 Aligned_cols=9 Identities=22% Similarity=0.287 Sum_probs=3.6
Q ss_pred cCCHHHHHH
Q 043480 313 GGQTRRAYK 321 (493)
Q Consensus 313 ~~~~~~a~~ 321 (493)
.|++++|..
T Consensus 53 rG~Yq~Al~ 61 (116)
T 2p58_C 53 RGDYASALQ 61 (116)
T ss_dssp TTCHHHHHH
T ss_pred chhHHHHHH
Confidence 344444433
No 324
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.24 E-value=1.4e+02 Score=21.93 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=36.7
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccC-CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCch
Q 043480 116 MVSKGREPDVVTYTIVIDGLCKAK-EFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKV 176 (493)
Q Consensus 116 ~~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (493)
+.+.|..++..- ..++..+...+ .+-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 445566554433 33445555555 6677888888887776556666666666666665543
No 325
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=33.32 E-value=2.2e+02 Score=24.06 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=8.3
Q ss_pred HHhcCChhHHHHHHHH
Q 043480 54 LIRHSRFDLVQFYYQQ 69 (493)
Q Consensus 54 ~~~~~~~~~a~~~~~~ 69 (493)
-++.|+.+-+..+++.
T Consensus 32 Av~~g~~~~V~~LL~~ 47 (337)
T 4g8k_A 32 AVQNEDVDLVQQLLEG 47 (337)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHC
Confidence 3455665555555543
No 326
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.20 E-value=1.3e+02 Score=21.48 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=36.0
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccC-CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCch
Q 043480 116 MVSKGREPDVVTYTIVIDGLCKAK-EFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKV 176 (493)
Q Consensus 116 ~~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (493)
+.+.|..++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 445566554333 33455555555 6777888888888776556666666666666555543
No 327
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=32.64 E-value=96 Score=24.09 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=21.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCC
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSN 39 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 39 (493)
-...+..|++.|.+++|.++|++.-..+
T Consensus 120 k~qAV~VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 120 KIQAIAVCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcCC
Confidence 3456778999999999999999976543
No 328
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.26 E-value=1.9e+02 Score=29.41 Aligned_cols=87 Identities=8% Similarity=-0.037 Sum_probs=58.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCc----------------
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSL---------------- 77 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------- 77 (493)
.++..+...|.++-|.++..-. +.++..-..++.+|...|++++|...|+++- .|+..
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~ 888 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAE 888 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHH
T ss_pred HHHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccC
Confidence 3677778888888776544332 3344444556788889999999999998764 23211
Q ss_pred -------ChhhHHHHHHHHhccCChhhHHHHHHHHH
Q 043480 78 -------TPFTYSRFISGLCEVKNFTLINILLDNMD 106 (493)
Q Consensus 78 -------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 106 (493)
...-|..++..+-..+-++.+..+..-..
T Consensus 889 ~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI 924 (950)
T 4gq2_M 889 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLAD 924 (950)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11256778888888888887776665544
No 329
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=32.06 E-value=1.7e+02 Score=22.27 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=14.0
Q ss_pred HHHccCCHhHHHHHHHHHHhCC
Q 043480 379 CLCKSREIGTAYGVFLDMVEQG 400 (493)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~ 400 (493)
+|-+..++..|...++.+++..
T Consensus 71 Cy~klKdYkkA~~~le~il~~k 92 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGK 92 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3455667777777777776543
No 330
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=31.94 E-value=2.1e+02 Score=23.38 Aligned_cols=47 Identities=11% Similarity=-0.164 Sum_probs=22.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccC
Q 043480 43 FSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVK 93 (493)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 93 (493)
+...-...+.++.+.|. +.+...+..+.. .++...-...+.++...+
T Consensus 36 ~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGG-QDAVRLAIEFCS---DKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SHHHHHHHHHHHHHHCC-HHHHHHHHHHHT---CSSHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHccCC-chHHHHHHHHHc---CCCHHHHHHHHHHHHHhc
Confidence 34444445555555553 334444444444 344444444455555554
No 331
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=31.91 E-value=1e+02 Score=22.21 Aligned_cols=17 Identities=6% Similarity=0.196 Sum_probs=9.6
Q ss_pred HHHHcCChhHHHHHHHH
Q 043480 18 NLVKAGLIDQAVHVFDE 34 (493)
Q Consensus 18 ~~~~~g~~~~A~~~~~~ 34 (493)
..++.|+.+....+++.
T Consensus 8 ~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 8 GAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 34455666666666555
No 332
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=31.89 E-value=75 Score=23.78 Aligned_cols=70 Identities=13% Similarity=0.120 Sum_probs=47.2
Q ss_pred hhHHHHHHHH-HhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC--CCCcChhhHHHHHHHHhccCCh
Q 043480 25 IDQAVHVFDE-MTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL--GFSLTPFTYSRFISGLCEVKNF 95 (493)
Q Consensus 25 ~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~ 95 (493)
.+.+++-+.+ +.+.|.+.+ ..-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T-~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYT-KQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455555544 445565554 34566778888888888999999999876 5556666666666777766644
No 333
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.41 E-value=1.3e+02 Score=20.99 Aligned_cols=48 Identities=6% Similarity=-0.034 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 107 KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 107 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
+.-.-+|+.+....+.|++..-..-+......++|+.|.++...+...
T Consensus 43 KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 43 RRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 445566777766656555544444445566778888888888877764
No 334
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=31.07 E-value=66 Score=23.29 Aligned_cols=45 Identities=13% Similarity=0.034 Sum_probs=23.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSR 59 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 59 (493)
++..+...++.-.|.++++.+.+.++..+..|-...+..+...|-
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 344444444555566666665555444445554445555555443
No 335
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=30.04 E-value=1.9e+02 Score=22.28 Aligned_cols=8 Identities=13% Similarity=-0.176 Sum_probs=2.9
Q ss_pred HHHHHhcC
Q 043480 51 IGVLIRHS 58 (493)
Q Consensus 51 ~~~~~~~~ 58 (493)
+..+.+.|
T Consensus 40 ~~~L~~~~ 47 (211)
T 3ltm_A 40 AYALGKIG 47 (211)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 33333333
No 336
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=29.92 E-value=1.3e+02 Score=20.20 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-----HHcCCCCCHHHHHHHH
Q 043480 423 EAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQM-----MEKGFTLDKTVSAALI 482 (493)
Q Consensus 423 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~~~~~~ll 482 (493)
.|.++.+++...|+.|+..+..-++..|...+- + +.++.++. ...|..|+...++.+=
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 355566666666666666666666666665543 1 22211111 1226666666665543
No 337
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=29.25 E-value=82 Score=22.77 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=31.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCch
Q 043480 129 TIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKV 176 (493)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (493)
..++..+...+.+-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345556666666777888888887776666666666666666655543
No 338
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=28.97 E-value=71 Score=21.08 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=12.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHH
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDE 34 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~ 34 (493)
+...+..+.+.|++++|++..+.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHH
Confidence 44445555555555555554443
No 339
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.83 E-value=1.1e+02 Score=21.79 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=22.9
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043480 376 IIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR 420 (493)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (493)
++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 334444444555666666666655444444444444455555543
No 340
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=28.65 E-value=3.4e+02 Score=24.71 Aligned_cols=141 Identities=15% Similarity=0.069 Sum_probs=77.6
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHH
Q 043480 23 GLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILL 102 (493)
Q Consensus 23 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 102 (493)
++.+-|.++..+ .|+|--...|..-...+..+|+|++|.++-.... .|+-.++.+.+.+-+.=...|+..
T Consensus 343 ~n~~lA~~lA~R---~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP-~giLRt~~Ti~rFk~vp~~pgq~s------ 412 (494)
T 1bpo_A 343 QNPDLALRMAVR---NNLAGAEELFARKFNALFAQGNYSEAAKVAANAP-KGILRTPDTIRRFQSVPAQPGQTS------ 412 (494)
T ss_dssp CCHHHHHHHHHH---TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG-GGSSCSHHHHHHHTTSCCCTTSCC------
T ss_pred CCHHHHHHHHHh---cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc-cccccCHHHHHHHhcCCCCCCCCC------
Confidence 667766666544 3455555667767778889999999988877663 345566666666555444445542
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHH
Q 043480 103 DNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYEL 182 (493)
Q Consensus 103 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 182 (493)
--+.+|..+.+.| ..+..--.-+++.-..+|+.+-....+. +..+..+ +-+..++ +..+..-|..+
T Consensus 413 -----plL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~---e~KL~~S-EeLGDlv----k~~d~~LAl~I 478 (494)
T 1bpo_A 413 -----PLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK---EDKLECS-EELGDLV----KSVDPTLALSV 478 (494)
T ss_dssp -----HHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH---HTCSCCC-HHHHHHH----HHHCSHHHHHH
T ss_pred -----HHHHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHh---cCCcccc-HHhHhhh----hhcCHHHHHHH
Confidence 2345566665554 2333333334555555555544333332 2222322 2233333 33355666666
Q ss_pred HHHHH
Q 043480 183 TVGAM 187 (493)
Q Consensus 183 ~~~~~ 187 (493)
|.+..
T Consensus 479 Y~~a~ 483 (494)
T 1bpo_A 479 YLRAN 483 (494)
T ss_dssp HHHHC
T ss_pred HHHcC
Confidence 66654
No 341
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=28.41 E-value=2e+02 Score=21.95 Aligned_cols=49 Identities=10% Similarity=-0.144 Sum_probs=21.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 043480 193 FGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVM 245 (493)
Q Consensus 193 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 245 (493)
++..+-...+.++.+.++.+ +...+..+.. .++...-...+.++...++
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCC
Confidence 34444445555555555432 2222222221 3444444444555544444
No 342
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=28.23 E-value=3.1e+02 Score=24.23 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=6.2
Q ss_pred HHcCCHHHHHHHH
Q 043480 346 LREGSSAMAEKLL 358 (493)
Q Consensus 346 ~~~~~~~~a~~~~ 358 (493)
+..|+.+-+..++
T Consensus 286 ~~~~~~~~~~~Ll 298 (437)
T 1n11_A 286 AQEGHVPVADVLI 298 (437)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3455555444443
No 343
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.85 E-value=3.4e+02 Score=24.49 Aligned_cols=55 Identities=15% Similarity=0.058 Sum_probs=33.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCC-----HHHHHHHHHHHHhCCC
Q 043480 312 KGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGS-----SAMAEKLLNQMRGMNL 366 (493)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 366 (493)
+..+.+.|+.++..|.+.|..|....-..+..+.-.-|. ...|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 357888888888888888776665554555544443332 2345555566666664
No 344
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=27.27 E-value=1.2e+02 Score=24.02 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCC
Q 043480 13 RAQISNLVKAGLIDQAVHVFDEMTQSN 39 (493)
Q Consensus 13 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 39 (493)
...+..|++.|.+++|.++|++....+
T Consensus 118 ~qAV~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 118 EAAVIICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 355678999999999999999987753
No 345
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.25 E-value=2e+02 Score=21.55 Aligned_cols=53 Identities=8% Similarity=0.045 Sum_probs=34.7
Q ss_pred hcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHHc
Q 043480 417 KSSRVSEAMHLYEEMQIRGAHP--DEVTFKLLIG-G-----LVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~~ 469 (493)
..|++=+|-++|+..-.....+ ....|..||. . ..+.|+...|.+++.+....
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3478888888887775543344 4555666666 2 23468888888888887763
No 346
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=27.17 E-value=1.3e+02 Score=24.45 Aligned_cols=55 Identities=9% Similarity=0.123 Sum_probs=34.7
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCC-------ChhhHHHHHHHHH--hcCChhHHHHHHHHh
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRV-------FSIDYNRFIGVLI--RHSRFDLVQFYYQQM 70 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 70 (493)
+...++.|+.+....+++...+.+... +..-++.+..+.. +.|+.+-+..+++..
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 444567899999999998766554222 2333455555543 347777777777664
No 347
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=26.62 E-value=2.5e+02 Score=22.58 Aligned_cols=114 Identities=10% Similarity=0.005 Sum_probs=64.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhC--CCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQS--NCRV----FSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
.-+..+....++++|..++++..+. +.++ ........+..-...+.-.-+..+.+++ .. .+++......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 4578899999999999999876532 1121 1122233343334444444455555555 32 455666777778
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVI 132 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 132 (493)
.+.+.|+.+.|..+|-+.....++ ..+.+.+..-|+..|..-+
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs~~i~--~~~r~l~~~gd~~~Yi~~L 142 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRSNFIQ--DLILQIGSVDNPTNYLTQL 142 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH--HHHHCC--CCSHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHHHHHH--HHHHHhcccCCHHHHHHHH
Confidence 889999998888766554322222 2222233444555555433
No 348
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.27 E-value=3.1e+02 Score=23.48 Aligned_cols=45 Identities=20% Similarity=0.038 Sum_probs=20.3
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 043480 112 VFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGI 156 (493)
Q Consensus 112 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 156 (493)
+++.+++.|..++...-...+...+..|+.+-+..+++.....|.
T Consensus 68 ~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 68 TAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQ 112 (364)
T ss_dssp HHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCC
Confidence 334444444433332222233344455666666666555444343
No 349
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=25.93 E-value=3.1e+02 Score=23.39 Aligned_cols=49 Identities=8% Similarity=-0.057 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 043480 387 GTAYGVFLDMVEQGITPDV--ISYNALINGLCKSSRVSEAMHLYEEMQIRG 435 (493)
Q Consensus 387 ~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (493)
.+..++-..+..-.+.|.. -+....|....+.+++..|..+.+++++.+
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3444444444443444332 233444555556666666666666666543
No 350
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.76 E-value=2.4e+02 Score=22.02 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=34.9
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh-----hHHHHHHHHHHHcCCC
Q 043480 381 CKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRV-----SEAMHLYEEMQIRGAH 437 (493)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-----~~a~~~~~~~~~~~~~ 437 (493)
.+..+.+.|+-.+.+|++.| .|....=..++.+.-.-|.- ..|...++.....|++
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45678999999999999988 66544444445555555532 2344455555555654
No 351
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=25.72 E-value=2.4e+02 Score=22.07 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=12.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 043480 202 ISGFCRTGRIRRAMAIKSFMKWNG 225 (493)
Q Consensus 202 ~~~~~~~~~~~~a~~~~~~~~~~~ 225 (493)
+...+..|+.+.+..+++.+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 334445566665555555554444
No 352
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=25.68 E-value=3.9e+02 Score=24.53 Aligned_cols=74 Identities=14% Similarity=0.033 Sum_probs=53.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHh
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (493)
|.....-...++.|...|..+.... |.+...||.+.-.....|+.-+|.-.|-+.+... .|-+.+...|...+.
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHH
Confidence 3444444567788999999988875 7777889999988888888877777777766654 566666666665554
No 353
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=25.48 E-value=4.6e+02 Score=25.22 Aligned_cols=80 Identities=11% Similarity=0.046 Sum_probs=41.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc---
Q 043480 201 LISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCN--- 277 (493)
Q Consensus 201 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 277 (493)
....+.-.|++|.|.+.+-.. ...+.+++...+..+ |-+... +.+..........-+..|+..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~---gLL~~~----~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASL---KLFKID----SSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHT---TC---------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHc---CCccCC----CcccccCCCcccccHHHHHHHHHHHhh
Confidence 455666789999999877644 244555555555443 322221 111111000113346677777764
Q ss_pred cCCHHHHHHHHHHH
Q 043480 278 SNQLDKAYMFMVKK 291 (493)
Q Consensus 278 ~~~~~~a~~~~~~~ 291 (493)
..+...|.++|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 56888888877665
No 354
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.20 E-value=4.1e+02 Score=24.57 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcCH--hHH-HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 043480 301 VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGI-ELDV--VTF-TILIKAFLREGSSAMAEKLLNQMRGM 364 (493)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 364 (493)
..+|.+++.|...+.++.|..+..+..-... .++. .+| --+...+.-.+++.+|.+.+....+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4577777777777777777777776642100 0111 111 12233445567777777777666543
No 355
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=25.08 E-value=3.4e+02 Score=23.60 Aligned_cols=27 Identities=11% Similarity=0.125 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHh
Q 043480 44 SIDYNRFIGVLIRHSRFDLVQFYYQQM 70 (493)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 70 (493)
+..|+.+...+.+.+++.+|++.|.+.
T Consensus 296 vYPYtylgGy~yR~~~~reAl~~WA~A 322 (472)
T 3re2_A 296 IYPYTYLGGYYYRKKKYYEAIASWVDA 322 (472)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhcchHHHHHHHHHHH
Confidence 455666667777777777777777665
No 356
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=24.78 E-value=1.6e+02 Score=21.14 Aligned_cols=19 Identities=5% Similarity=0.013 Sum_probs=13.2
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 043480 51 IGVLIRHSRFDLVQFYYQQ 69 (493)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~ 69 (493)
+...+..|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344667888888877776
No 357
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=23.80 E-value=1.6e+02 Score=19.30 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=37.1
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhH
Q 043480 28 AVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLI 98 (493)
Q Consensus 28 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 98 (493)
...+++.+.+.+ -.+...+..+-. .....++|..+++.+...| +.+|..++.++...+....|
T Consensus 24 v~~lld~L~~~~-vlt~~~~e~I~~---~~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDG-FLTISEEEKVRN---EPTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHT-SSCHHHHHHHHT---SSSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCC-CCCHHHHHHHHc---CCChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHHHH
Confidence 345666666655 223333333322 3566778888888876543 56677777777776654433
No 358
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=23.75 E-value=1.7e+02 Score=19.61 Aligned_cols=32 Identities=22% Similarity=0.083 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHhccC
Q 043480 143 KAVQAWEHMIENGIKPDNKACAALVVGLCGDG 174 (493)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (493)
.|.++.+++...|+.|+..++..++..|...+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 34455555555666666666666555554444
No 359
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=23.59 E-value=1.1e+02 Score=20.36 Aligned_cols=52 Identities=13% Similarity=-0.055 Sum_probs=31.5
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH-----HhcCChhHHHHHHHHhcc
Q 043480 19 LVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVL-----IRHSRFDLVQFYYQQMHP 72 (493)
Q Consensus 19 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~ 72 (493)
+...|++-+|-++++........+....|..+|... .+.|+. |..++.+...
T Consensus 11 lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 11 LWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 445588888888888887765233344455555432 245666 6666666544
No 360
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=23.29 E-value=3e+02 Score=22.37 Aligned_cols=137 Identities=13% Similarity=0.075 Sum_probs=60.1
Q ss_pred cCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC-CHhHHHHHHHHHHhCCCCCCHhhHHHH
Q 043480 333 LDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSR-EIGTAYGVFLDMVEQGITPDVISYNAL 411 (493)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l 411 (493)
++...-...+.+....|+.+ +...+..+.+ .++..+-...+.++...| +...+...+..+.+ .++..+-...
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A 212 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEA 212 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHH
Confidence 34444444455555555432 2333333332 344444444444444433 12334444444443 2355555556
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 412 INGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAI 485 (493)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 485 (493)
+.++...|+....-.+.+.+.+ |+ .-...+.++.+.|+ ..+...+..+.+. .++.......+.++
T Consensus 213 ~~aL~~~~~~~~~~~L~~~l~d----~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~--~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 213 IIGLSYRKDKRVLSVLCDELKK----NT--VYDDIIEAAGELGD-KTLLPVLDTMLYK--FDDNEIITSAIDKL 277 (280)
T ss_dssp HHHHHHTTCGGGHHHHHHHHTS----SS--CCHHHHHHHHHHCC-GGGHHHHHHHHTT--SSCCHHHHHHHHHH
T ss_pred HHHHHHhCCHhhHHHHHHHhcC----cc--HHHHHHHHHHhcCc-hhhhHHHHHHHhc--CCCcHHHHHHHHHh
Confidence 6666666654433333333322 22 22334555666666 3455555555543 34444555544443
No 361
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.17 E-value=2.5e+02 Score=22.49 Aligned_cols=55 Identities=13% Similarity=0.004 Sum_probs=32.8
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHH-------hHHHHHHHHh--ccCchhHHHHHHHHHH
Q 043480 133 DGLCKAKEFDKAVQAWEHMIENGIKPDNK-------ACAALVVGLC--GDGKVDLAYELTVGAM 187 (493)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~~ 187 (493)
...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+.-+++...
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 34556788888777887777666555432 2233443332 5677777766666543
No 362
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.13 E-value=3.4e+02 Score=22.93 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 199 NALISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 199 ~~l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
..++.-|...|+.++|.+.++++.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC
Confidence 456777777888888888888775
No 363
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=22.65 E-value=4e+02 Score=23.52 Aligned_cols=202 Identities=9% Similarity=0.074 Sum_probs=90.8
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChhh--HHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccC
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSID--YNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVK 93 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 93 (493)
+...+..|+.+-...+++. |..++... ....+...+..|+.+-+..+++.-...+ ..+..-.+ .+...+..|
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~----g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t-~L~~A~~~g 91 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQR----GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN-AKAKDDQT-PLHCAARIG 91 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHT----TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTSCC-HHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCC-HHHHHHHCC
Confidence 4445667888766666553 33333211 1234445567788877777776532221 11222222 233344556
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC---HHhHHHHH
Q 043480 94 NFTLINILLDNMDKLALEVFHKMVSKGREPDVV---TYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD---NKACAALV 167 (493)
Q Consensus 94 ~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 167 (493)
+. ++++.+.+.|..++.. ..+ .+...+..|+.+-+..+++ .+..++ ....+ .+
T Consensus 92 ~~---------------~~v~~Ll~~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t-~L 150 (437)
T 1n11_A 92 HT---------------NMVKLLLENNANPNLATTAGHT-PLHIAAREGHVETVLALLE----KEASQACMTKKGFT-PL 150 (437)
T ss_dssp CH---------------HHHHHHHHHTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCC-HH
T ss_pred CH---------------HHHHHHHhCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCC-HH
Confidence 55 3444445555544322 222 3334455677665555443 332221 11122 23
Q ss_pred HHHhccCchhHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHc
Q 043480 168 VGLCGDGKVDLAYELTVGAMKGKVEFGVLI--YNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLV---TYNAILNYYCD 242 (493)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~ 242 (493)
...+..|+.+-+.-++ +.+..++... -...+...+..|+.+-+ +.+.+.|..++.. .++. +...+.
T Consensus 151 ~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~-L~~A~~ 221 (437)
T 1n11_A 151 HVAAKYGKVRVAELLL----ERDAHPNAAGKNGLTPLHVAVHHNNLDIV----KLLLPRGGSPHSPAWNGYTP-LHIAAK 221 (437)
T ss_dssp HHHHHTTCHHHHHHHH----HTTCCTTCCCSSCCCHHHHHHHTTCHHHH----HHHGGGTCCSCCCCTTCCCH-HHHHHH
T ss_pred HHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCCCCcCCCCCCH-HHHHHH
Confidence 3345566665444443 3333332211 11234455667776544 3344444333321 1222 334455
Q ss_pred cCChHHHHHHH
Q 043480 243 EVMLDEAEKLV 253 (493)
Q Consensus 243 ~~~~~~a~~~~ 253 (493)
.|+.+-+..++
T Consensus 222 ~~~~~~~~~Ll 232 (437)
T 1n11_A 222 QNQVEVARSLL 232 (437)
T ss_dssp TTCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 67765544444
No 364
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.51 E-value=4.3e+02 Score=23.82 Aligned_cols=47 Identities=17% Similarity=0.100 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHc--------CCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 043480 315 QTRRAYKLFEGMRRR--------GIELDVVTFTILIKAFLREGSSAMAEKLLNQMRG 363 (493)
Q Consensus 315 ~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 363 (493)
..++...+++..... ++..+......++.. ..|+...+..+++.+..
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 445666677666543 233455556666554 47888888888887764
No 365
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.40 E-value=2.8e+02 Score=21.57 Aligned_cols=187 Identities=14% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHH--HHHHHHHHc
Q 043480 271 LLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFT--ILIKAFLRE 348 (493)
Q Consensus 271 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~ 348 (493)
.+...++.|+.+....++..-.......+....+.+..+..... .++++.+.+.|..++..... ..+...+..
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGH-----TEIVEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCc-----HHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHhcCChhHHHH
Q 043480 349 GSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYN--ALINGLCKSSRVSEAMH 426 (493)
Q Consensus 349 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~ 426 (493)
|+.+-+..+++.-.... .++..-.+.+..+..... .++++.+.+.|..++..... ..+...+..|+.+-+..
T Consensus 84 ~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 157 (231)
T 3aji_A 84 GXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNR-----HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157 (231)
T ss_dssp TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043480 427 LYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLD 474 (493)
Q Consensus 427 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 474 (493)
+++.-...+.. |..-.+.+-.+..... .++.+.+++.|..++
T Consensus 158 Ll~~g~~~~~~-~~~g~t~L~~A~~~~~-----~~~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 158 LLFYKASTNIQ-DTEGNTPLHLACDEER-----VEEAKFLVTQGASIY 199 (231)
T ss_dssp HHHTTCCSCCC-CTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCSC
T ss_pred HHhcCCCcccc-CCCCCCHHHHHHHCCC-----HHHHHHHHHCCCCCC
No 366
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.11 E-value=3.8e+02 Score=23.61 Aligned_cols=91 Identities=12% Similarity=-0.013 Sum_probs=54.4
Q ss_pred HHHHHhcCChhHHHHHHHHhccCC----------------CCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHH
Q 043480 51 IGVLIRHSRFDLVQFYYQQMHPLG----------------FSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFH 114 (493)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~ 114 (493)
+.+.....+.+++.+.++.+...- ...-......+.+.+...++.+.|...++ .+...++
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~----~~~~~l~ 158 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLD----DLEKTLD 158 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHH----HHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHH----HHHHhhh
Confidence 445566778899999998774321 01123445566677888899987776663 3444444
Q ss_pred HHHhCCCCCC--HhhHHHHHHHHhccCCHHHHHHH
Q 043480 115 KMVSKGREPD--VVTYTIVIDGLCKAKEFDKAVQA 147 (493)
Q Consensus 115 ~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~ 147 (493)
.+. +.+|. ...|......|...+++..+...
T Consensus 159 ~~~--~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~ 191 (393)
T 4b4t_O 159 KKD--SIPLRITNSFYSTNSQYFKFKNDFNSFYYT 191 (393)
T ss_dssp HSC--CSSSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccC--CccHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 432 23332 33466666667777777665443
No 367
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=22.10 E-value=1.2e+02 Score=22.84 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=20.0
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMV 397 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 397 (493)
....++.-|...|+.++|...++++.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 34567777888888888888888865
No 368
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.35 E-value=3.9e+02 Score=22.92 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 198 YNALISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567777888888888888877775
No 369
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.18 E-value=1.3e+02 Score=21.03 Aligned_cols=42 Identities=5% Similarity=0.006 Sum_probs=25.6
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhcc
Q 043480 31 VFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHP 72 (493)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 72 (493)
+|+.+...++.+++..-..-+......++|+.|..+...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444455555544433333334455678889999888888765
No 370
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=21.16 E-value=2.5e+02 Score=25.40 Aligned_cols=62 Identities=6% Similarity=0.091 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC--------hhhHHH-HHHHHHhcCChhHHHHHHHHhcc
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF--------SIDYNR-FIGVLIRHSRFDLVQFYYQQMHP 72 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~ 72 (493)
+.+.|...|.+.|++.-+..++..+...+..|+ ..+|.. +++.+..++++.+|.+.+..+.+
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 466777888888888888888887766543222 233443 44566777888888777766654
No 371
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.49 E-value=2.2e+02 Score=24.53 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=15.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 043480 268 YNQLLKGLCNSNQLDKAYMFMVKK 291 (493)
Q Consensus 268 ~~~l~~~~~~~~~~~~a~~~~~~~ 291 (493)
...++.-|...|+.++|...++++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 345666677777777776666554
No 372
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=20.06 E-value=3e+02 Score=21.15 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=45.1
Q ss_pred HHHHHHHHccCCHh---HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-------CHHHH
Q 043480 374 TTIIDCLCKSREIG---TAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-------DEVTF 443 (493)
Q Consensus 374 ~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-------~~~~~ 443 (493)
...+.-+.+.|+++ +|-.+.+.|... +...-...-...........-.+++.+|+.. ..| +..++
T Consensus 35 Sa~L~eLirs~~PeDL~~AN~LiK~m~~~----d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~-~~pg~~~~~~d~Ell 109 (186)
T 1oxz_A 35 SKMLARLLKSSHPEDLRAANKLIKEMVQE----DQKRMEKISKRVNAIEEVNNNVKLLTEMVMS-HSQGGAAAGSSEDLM 109 (186)
T ss_dssp HHHHHHHHSCCSHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSSSCSCTTTTHHHH
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHhcc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCccCccccHHHH
Confidence 34444555555433 555555555543 2222222222222223344466777777653 111 44555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043480 444 KLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALI 482 (493)
Q Consensus 444 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 482 (493)
.-|...| +.+...+.++.... .-|......++
T Consensus 110 ~eL~~~C------k~~qp~i~~Li~e~-~ddee~L~elL 141 (186)
T 1oxz_A 110 KELYQRC------ERMRPTLFRLASDT-EDNDEALAEIL 141 (186)
T ss_dssp HHHHHHH------HHHHHHHHHHHHHC-CSCHHHHHHHH
T ss_pred HHHHHHH------HHHHHHHHHHHHHc-cCCHHHHHHHH
Confidence 5554444 34666666666532 33444444443
Done!