BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043481
         (351 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DI2|B Chain B, Crystal Structure Of The Complex Of Human Interleukin-7
           With Unglycosylated Human Interleukin-7 Receptor Alpha
           Ectodomain
 pdb|3DI2|D Chain D, Crystal Structure Of The Complex Of Human Interleukin-7
           With Unglycosylated Human Interleukin-7 Receptor Alpha
           Ectodomain
 pdb|3DI3|B Chain B, Crystal Structure Of The Complex Of Human Interleukin-7
           With Glycosylated Human Interleukin-7 Receptor Alpha
           Ectodomain
 pdb|3UP1|A Chain A, Crystal Structure Of The Unliganded Human Interleukin-7
           Receptor Extracellular Domain
 pdb|3UP1|B Chain B, Crystal Structure Of The Unliganded Human Interleukin-7
           Receptor Extracellular Domain
          Length = 223

 Score = 28.1 bits (61), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 16/94 (17%)

Query: 113 TTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIG--------AILSATDSV 164
           TT L F ICG      L+ V   +  K   +  +  + FL IG           S T   
Sbjct: 50  TTNLEFEICGA-----LVEVKCLNFRKLQEIYFIETKKFLLIGKSNICVKVGEKSLTCKK 104

Query: 165 CTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFN 198
             L  + + E PF  S+V+ EG  ND   +V FN
Sbjct: 105 IDLTTIVKPEAPFDLSVVYREG-ANDF--VVTFN 135


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.138    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,389,321
Number of Sequences: 62578
Number of extensions: 241047
Number of successful extensions: 533
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 5
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)