Query 043481
Match_columns 351
No_of_seqs 151 out of 1429
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:30:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1965 Sodium/hydrogen exchan 100.0 3.1E-50 6.7E-55 389.6 28.2 320 17-337 26-351 (575)
2 TIGR00840 b_cpa1 sodium/hydrog 100.0 1.5E-44 3.3E-49 362.0 37.3 303 27-335 10-320 (559)
3 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 7.1E-41 1.5E-45 335.3 31.7 274 39-329 10-285 (525)
4 COG0025 NhaP NhaP-type Na+/H+ 100.0 2.4E-40 5.2E-45 323.1 34.5 307 31-348 11-320 (429)
5 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 3.6E-38 7.7E-43 318.8 33.8 304 15-329 3-314 (810)
6 KOG1966 Sodium/hydrogen exchan 100.0 1.3E-39 2.8E-44 314.3 12.5 318 12-338 30-355 (670)
7 PRK05326 potassium/proton anti 100.0 1.1E-35 2.4E-40 301.2 31.0 290 32-340 12-304 (562)
8 COG3263 NhaP-type Na+/H+ and K 100.0 1.8E-32 3.8E-37 255.9 25.6 301 31-350 11-312 (574)
9 TIGR00932 2a37 transporter, mo 100.0 5.1E-29 1.1E-33 231.0 28.2 267 38-327 4-272 (273)
10 KOG4505 Na+/H+ antiporter [Ino 100.0 9.5E-29 2.1E-33 223.9 25.4 305 14-331 2-316 (467)
11 PF00999 Na_H_Exchanger: Sodiu 100.0 2.5E-30 5.5E-35 250.5 -0.8 271 38-328 8-281 (380)
12 COG0475 KefB Kef-type K+ trans 99.9 1.5E-24 3.2E-29 210.5 29.4 281 28-330 8-293 (397)
13 PRK03562 glutathione-regulated 99.9 3E-24 6.4E-29 219.3 31.1 274 30-329 9-287 (621)
14 PRK03659 glutathione-regulated 99.9 1.5E-23 3.2E-28 213.7 31.4 270 33-329 12-284 (601)
15 PLN03159 cation/H(+) antiporte 99.9 5E-23 1.1E-27 215.8 32.6 287 32-329 49-341 (832)
16 PRK10669 putative cation:proto 99.9 3.7E-22 7.9E-27 202.6 30.6 277 32-330 12-296 (558)
17 COG4651 RosB Kef-type K+ trans 99.6 1E-13 2.2E-18 125.1 20.7 278 28-330 8-296 (408)
18 KOG1650 Predicted K+/H+-antipo 99.3 2.7E-11 5.9E-16 126.2 14.8 280 41-328 37-328 (769)
19 PRK14853 nhaA pH-dependent sod 98.8 2.1E-06 4.6E-11 83.1 22.4 207 86-329 65-288 (423)
20 TIGR00773 NhaA Na+/H+ antiport 98.0 0.00027 6E-09 67.5 15.5 204 87-329 56-271 (373)
21 PF13593 DUF4137: SBF-like CPA 97.0 0.26 5.7E-06 46.6 21.8 33 83-115 28-60 (313)
22 PF06965 Na_H_antiport_1: Na+/ 96.6 0.055 1.2E-06 51.9 13.6 206 86-328 58-277 (378)
23 PF03601 Cons_hypoth698: Conse 96.3 1 2.3E-05 42.4 24.3 112 49-172 24-139 (305)
24 PRK09560 nhaA pH-dependent sod 96.1 0.28 6.2E-06 47.3 15.1 203 86-327 62-278 (389)
25 PRK09561 nhaA pH-dependent sod 95.7 0.32 6.9E-06 46.9 13.6 202 87-327 63-276 (388)
26 PRK14855 nhaA pH-dependent sod 95.6 0.49 1.1E-05 46.2 14.8 167 87-291 67-243 (423)
27 PRK14854 nhaA pH-dependent sod 95.5 0.57 1.2E-05 45.1 14.6 203 86-327 59-273 (383)
28 COG0385 Predicted Na+-dependen 95.3 2.7 5.8E-05 39.7 20.1 152 87-245 39-191 (319)
29 PF03616 Glt_symporter: Sodium 95.3 3.1 6.7E-05 40.3 24.7 79 38-121 15-99 (368)
30 COG2855 Predicted membrane pro 95.2 0.4 8.6E-06 45.3 12.3 123 36-171 21-147 (334)
31 PF01758 SBF: Sodium Bile acid 95.0 0.53 1.1E-05 40.9 12.2 145 90-243 2-149 (187)
32 PRK14856 nhaA pH-dependent sod 94.8 0.89 1.9E-05 44.6 14.1 168 86-291 71-248 (438)
33 PRK03659 glutathione-regulated 94.8 1.2 2.5E-05 46.2 15.8 101 87-194 266-370 (601)
34 PF05684 DUF819: Protein of un 94.7 4.6 9.9E-05 39.3 22.5 86 49-140 23-108 (378)
35 COG0786 GltS Na+/glutamate sym 94.6 4.6 0.0001 39.0 20.4 79 38-122 17-102 (404)
36 PRK03562 glutathione-regulated 94.5 1.3 2.9E-05 46.0 15.5 92 87-185 269-364 (621)
37 PF03956 DUF340: Membrane prot 93.8 0.36 7.8E-06 42.3 8.2 88 56-159 3-95 (191)
38 TIGR00808 malonate_madM malona 93.7 2.3 5E-05 37.2 12.7 94 38-136 24-129 (254)
39 PF06826 Asp-Al_Ex: Predicted 93.7 1.4 3E-05 37.8 11.4 111 49-171 21-135 (169)
40 PRK10669 putative cation:proto 93.0 4.4 9.5E-05 41.5 16.1 105 87-198 277-385 (558)
41 COG2431 Predicted membrane pro 92.7 1 2.2E-05 41.2 9.5 90 53-158 108-201 (297)
42 PLN03159 cation/H(+) antiporte 92.4 2.1 4.6E-05 46.0 13.2 72 87-165 323-396 (832)
43 TIGR00841 bass bile acid trans 91.4 12 0.00026 34.8 16.2 69 92-168 14-84 (286)
44 COG0475 KefB Kef-type K+ trans 91.1 3.1 6.6E-05 40.8 11.7 99 49-160 241-340 (397)
45 COG3493 CitS Na+/citrate sympo 90.8 5.9 0.00013 38.1 12.6 138 31-174 269-410 (438)
46 PRK12460 2-keto-3-deoxyglucona 90.6 1.5 3.2E-05 41.2 8.5 88 56-155 167-254 (312)
47 COG3004 NhaA Na+/H+ antiporter 90.4 16 0.00036 34.5 15.5 197 94-329 73-281 (390)
48 PF05145 AmoA: Putative ammoni 90.3 9.9 0.00021 36.0 14.1 64 84-153 202-267 (318)
49 TIGR00832 acr3 arsenical-resis 90.2 17 0.00038 34.5 20.0 99 90-197 47-149 (328)
50 COG0798 ACR3 Arsenite efflux p 90.2 17 0.00038 34.5 18.3 178 52-244 18-201 (342)
51 PF03616 Glt_symporter: Sodium 90.1 15 0.00034 35.5 15.4 92 35-129 230-322 (368)
52 KOG3826 Na+/H+ antiporter [Ino 89.8 0.61 1.3E-05 41.6 5.0 83 86-174 158-240 (252)
53 PF03390 2HCT: 2-hydroxycarbox 88.7 11 0.00024 36.9 13.1 141 27-174 247-391 (414)
54 TIGR03082 Gneg_AbrB_dup membra 88.6 13 0.00029 31.1 13.6 64 84-153 45-110 (156)
55 TIGR00210 gltS sodium--glutama 88.2 27 0.00059 34.2 25.6 21 273-293 243-263 (398)
56 COG0786 GltS Na+/glutamate sym 87.9 27 0.00059 33.9 14.9 151 37-197 233-393 (404)
57 PF05982 DUF897: Domain of unk 87.6 6.9 0.00015 37.0 10.6 139 52-201 177-322 (327)
58 TIGR00659 conserved hypothetic 87.6 18 0.0004 32.4 12.9 98 29-129 5-104 (226)
59 TIGR03802 Asp_Ala_antiprt aspa 86.9 5.7 0.00012 40.8 10.6 108 50-174 34-144 (562)
60 TIGR00698 conserved hypothetic 86.7 30 0.00065 33.1 28.1 112 50-172 30-145 (335)
61 TIGR00210 gltS sodium--glutama 86.7 34 0.00073 33.6 16.7 158 36-200 229-393 (398)
62 PRK03818 putative transporter; 85.6 7.3 0.00016 39.9 10.6 80 54-138 33-115 (552)
63 TIGR03802 Asp_Ala_antiprt aspa 85.0 26 0.00056 36.1 14.2 108 53-173 417-531 (562)
64 TIGR00783 ccs citrate carrier 84.9 21 0.00045 34.3 12.5 139 28-174 181-324 (347)
65 TIGR00698 conserved hypothetic 84.6 7.9 0.00017 37.0 9.7 41 86-126 280-320 (335)
66 PRK04288 antiholin-like protei 84.2 27 0.00059 31.5 12.3 33 97-129 78-110 (232)
67 PRK04972 putative transporter; 82.9 19 0.00041 37.0 12.3 110 52-174 411-527 (558)
68 COG1346 LrgB Putative effector 82.3 37 0.0008 30.5 16.6 73 95-178 73-148 (230)
69 PRK04972 putative transporter; 81.6 21 0.00046 36.6 12.0 67 50-128 36-105 (558)
70 COG3180 AbrB Putative ammonia 80.6 48 0.001 31.8 13.0 106 35-153 193-300 (352)
71 TIGR01625 YidE_YbjL_dupl AspT/ 80.1 30 0.00065 29.1 10.5 109 54-172 24-137 (154)
72 COG2855 Predicted membrane pro 78.4 22 0.00048 33.8 10.0 41 86-126 282-322 (334)
73 PRK05326 potassium/proton anti 77.3 17 0.00036 37.3 9.8 33 86-118 274-306 (562)
74 PF04172 LrgB: LrgB-like famil 74.0 48 0.001 29.6 10.5 91 38-131 4-96 (215)
75 COG2985 Predicted permease [Ge 73.4 30 0.00065 34.6 9.7 85 87-176 60-147 (544)
76 PF03812 KdgT: 2-keto-3-deoxyg 71.4 93 0.002 29.4 14.0 102 90-194 49-153 (314)
77 TIGR00946 2a69 he Auxin Efflux 69.3 86 0.0019 29.4 12.0 39 85-123 210-248 (321)
78 PRK03818 putative transporter; 68.1 58 0.0013 33.4 11.1 108 54-171 403-515 (552)
79 PRK04125 murein hydrolase regu 68.0 69 0.0015 26.5 11.0 40 99-138 78-117 (141)
80 PF05982 DUF897: Domain of unk 65.2 1.3E+02 0.0028 28.6 13.3 83 86-176 28-114 (327)
81 PRK10711 hypothetical protein; 64.0 1E+02 0.0022 27.9 10.4 32 97-128 73-104 (231)
82 PF03818 MadM: Malonate/sodium 59.6 41 0.00089 23.4 5.5 35 34-68 19-56 (60)
83 TIGR00400 mgtE Mg2+ transporte 56.5 1.3E+02 0.0029 29.8 11.1 20 50-69 284-303 (449)
84 PRK01658 holin-like protein; V 54.9 1.1E+02 0.0024 24.6 10.9 40 99-138 75-114 (122)
85 PF00999 Na_H_Exchanger: Sodiu 51.6 8 0.00017 37.2 1.5 104 46-163 229-336 (380)
86 COG2985 Predicted permease [Ge 51.2 1.5E+02 0.0034 29.8 10.1 100 54-168 398-506 (544)
87 COG3329 Predicted permease [Ge 50.7 79 0.0017 29.7 7.6 147 42-198 208-363 (372)
88 KOG1650 Predicted K+/H+-antipo 50.1 37 0.00079 36.4 6.2 74 85-166 309-382 (769)
89 KOG2718 Na+-bile acid cotransp 49.4 42 0.00091 32.5 5.9 106 90-201 117-223 (371)
90 PF13194 DUF4010: Domain of un 48.1 2E+02 0.0043 25.5 13.9 63 131-195 7-69 (211)
91 PF06963 FPN1: Ferroportin1 (F 47.3 2.9E+02 0.0064 27.4 11.7 105 229-335 300-423 (432)
92 TIGR00932 2a37 transporter, mo 47.1 1E+02 0.0023 28.0 8.1 56 267-328 8-63 (273)
93 PF06912 DUF1275: Protein of u 46.6 1.6E+02 0.0034 25.7 8.9 27 178-204 3-30 (209)
94 PRK01821 hypothetical protein; 46.0 1.7E+02 0.0036 24.0 10.8 39 99-137 80-118 (133)
95 TIGR00844 c_cpa1 na(+)/h(+) an 43.2 1.3E+02 0.0028 32.3 8.8 26 265-290 28-53 (810)
96 TIGR00783 ccs citrate carrier 42.3 3.2E+02 0.007 26.3 19.1 61 87-154 26-86 (347)
97 COG3493 CitS Na+/citrate sympo 39.7 3.7E+02 0.0081 26.3 22.5 62 86-154 111-172 (438)
98 COG3329 Predicted permease [Ge 39.3 2.5E+02 0.0053 26.6 8.9 112 51-175 16-130 (372)
99 PF09946 DUF2178: Predicted me 38.7 2E+02 0.0042 22.7 8.6 11 281-291 33-43 (111)
100 PF03390 2HCT: 2-hydroxycarbox 37.9 4.1E+02 0.0089 26.2 25.2 62 86-154 94-155 (414)
101 PF03812 KdgT: 2-keto-3-deoxyg 37.8 1.7E+02 0.0036 27.7 7.8 39 89-127 200-238 (314)
102 PF15179 Myc_target_1: Myc tar 36.9 68 0.0015 27.7 4.6 28 219-246 20-47 (197)
103 TIGR00946 2a69 he Auxin Efflux 36.6 3E+02 0.0065 25.7 9.7 22 85-106 40-61 (321)
104 PRK14855 nhaA pH-dependent sod 36.1 1.4E+02 0.0031 29.5 7.3 42 307-348 63-110 (423)
105 PF03788 LrgA: LrgA family; I 35.8 2E+02 0.0043 22.0 7.2 45 88-132 49-93 (96)
106 COG0679 Predicted permeases [G 35.6 3.7E+02 0.0081 25.1 14.6 37 85-121 196-232 (311)
107 KOG2290 Rhomboid family protei 34.8 1.2E+02 0.0027 30.1 6.6 48 277-336 523-570 (652)
108 PRK14854 nhaA pH-dependent sod 34.6 1.3E+02 0.0027 29.4 6.6 43 306-348 55-103 (383)
109 PRK09561 nhaA pH-dependent sod 34.0 1.6E+02 0.0034 28.8 7.2 42 307-348 59-106 (388)
110 PRK14856 nhaA pH-dependent sod 30.6 1.4E+02 0.003 29.6 6.3 80 269-348 19-115 (438)
111 PF11286 DUF3087: Protein of u 30.6 1.6E+02 0.0036 25.0 5.9 95 102-199 5-116 (165)
112 PF06610 DUF1144: Protein of u 30.1 1.4E+02 0.003 24.5 5.1 57 186-245 81-140 (143)
113 TIGR03136 malonate_biotin Na+- 29.7 3.5E+02 0.0075 26.3 8.5 99 128-243 237-335 (399)
114 PRK09560 nhaA pH-dependent sod 28.9 1.6E+02 0.0035 28.8 6.3 43 306-348 58-106 (389)
115 PRK09903 putative transporter 28.8 4.8E+02 0.01 24.3 11.0 27 85-111 201-227 (314)
116 TIGR00773 NhaA Na+/H+ antiport 26.1 2E+02 0.0043 28.0 6.4 43 306-348 51-99 (373)
117 COG4651 RosB Kef-type K+ trans 23.5 2.2E+02 0.0047 27.1 5.8 91 259-349 14-131 (408)
118 PRK01844 hypothetical protein; 23.3 3E+02 0.0065 20.0 5.8 16 224-239 10-25 (72)
119 PRK14853 nhaA pH-dependent sod 23.2 2.8E+02 0.006 27.5 6.9 43 306-348 61-109 (423)
120 PF06965 Na_H_antiport_1: Na+/ 23.0 61 0.0013 31.5 2.3 42 307-348 55-102 (378)
121 PF12911 OppC_N: N-terminal TM 22.9 1.6E+02 0.0035 19.5 3.9 16 105-120 9-24 (56)
122 PF06295 DUF1043: Protein of u 21.9 80 0.0017 25.6 2.5 18 226-243 4-21 (128)
123 PRK12460 2-keto-3-deoxyglucona 21.7 6.9E+02 0.015 23.7 12.2 102 91-198 50-152 (312)
124 cd03381 PAP2_glucose_6_phospha 21.6 1.7E+02 0.0037 26.4 4.8 63 219-281 131-193 (235)
125 PRK10711 hypothetical protein; 21.1 6.2E+02 0.013 22.8 10.0 104 166-282 41-149 (231)
126 PF03601 Cons_hypoth698: Conse 20.6 4.6E+02 0.01 24.7 7.7 34 257-290 4-41 (305)
127 PRK15081 glutathione ABC trans 20.6 7E+02 0.015 23.3 9.4 18 178-195 47-64 (306)
128 COG5505 Predicted integral mem 20.5 7.5E+02 0.016 23.6 11.1 54 85-139 59-112 (384)
129 PF03672 UPF0154: Uncharacteri 20.3 2.9E+02 0.0063 19.6 4.7 14 225-238 4-17 (64)
130 COG4589 Predicted CDP-diglycer 20.3 3.2E+02 0.007 25.1 6.1 74 119-198 214-290 (303)
131 TIGR02454 CbiQ_TIGR cobalt ABC 20.1 5.5E+02 0.012 21.8 9.0 19 158-176 111-129 (198)
No 1
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-50 Score=389.63 Aligned_cols=320 Identities=49% Similarity=0.834 Sum_probs=291.9
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhhcC--ccchHHHHHHHHHHHHHHHHhhccCCCc---cccccChhHHHHhh
Q 043481 17 ASFLNTSTIIALSVFFTLLCACIIIGHLIEENR--WANESITALLLGLCAGGVVLLASKDRSS---HLLVFNEDLFFLYL 91 (351)
Q Consensus 17 ~~~~~~~~~~~l~i~~~ll~~~~~~~~~l~~~~--~iP~~~~~ll~GillG~~~~~~~~~~~~---~~~~~~~~~~~~i~ 91 (351)
++++|+++...+..++.+++.+++++|+++++| ++|+.+..+++|+++|.+..+..+.... .+..++||.+..+.
T Consensus 26 ~~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vL 105 (575)
T KOG1965|consen 26 ASEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVL 105 (575)
T ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHh
Confidence 456788888899999999999999999998755 7999999999999999988877665555 56789999999999
Q ss_pred hHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhc
Q 043481 92 LPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLS 171 (351)
Q Consensus 92 L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~ 171 (351)
+|+|+|++|++++.+.++||..++..++++|+.+++.+++..+|++.......+++|.+++.+|+++|||||+.++++++
T Consensus 106 LPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfn 185 (575)
T KOG1965|consen 106 LPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFN 185 (575)
T ss_pred hchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHH
Confidence 99999999999999999999999999999999999999999998874433334899999999999999999999999999
Q ss_pred cCCC-cchhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 043481 172 QDET-PFLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRH 250 (351)
Q Consensus 172 ~~~~-~~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~~~ 250 (351)
|.++ |++..+++|||++||++++++++.+......+.+.....+.++.++..++++..+|++.|.+.++++|+.+. ||
T Consensus 186 el~vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l-~~ 264 (575)
T KOG1965|consen 186 ELGVDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYL-RR 264 (575)
T ss_pred HhCCCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence 9997 589999999999999999999999998876544443444789999999999999999999999999999976 47
Q ss_pred CCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 043481 251 STDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDI 330 (351)
Q Consensus 251 ~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~~ 330 (351)
.+..|..+.+.++|.+|++||.+|+||++++++||++++.|.++|.+++++...+++|+.+++++|+++|.|+|+.+.+.
T Consensus 265 ~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~ 344 (575)
T KOG1965|consen 265 TPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDF 344 (575)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccchhhH
Q 043481 331 DKWKASN 337 (351)
Q Consensus 331 ~~~~~~~ 337 (351)
++|.+..
T Consensus 345 ~k~~~~~ 351 (575)
T KOG1965|consen 345 QKHVYKS 351 (575)
T ss_pred cceeeec
Confidence 8887773
No 2
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=100.00 E-value=1.5e-44 Score=362.01 Aligned_cols=303 Identities=30% Similarity=0.543 Sum_probs=256.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCH
Q 043481 27 ALSVFFTLLCACIIIGHLIEENR-WANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKK 105 (351)
Q Consensus 27 ~l~i~~~ll~~~~~~~~~l~~~~-~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~ 105 (351)
...+++.+...+.+..++..|+. ++|+++.++++|+++|+........ +..+++|+++..++||+|+|++|+++|+
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~~---~~~~l~~~lf~~~~LPpIlFe~g~~l~~ 86 (559)
T TIGR00840 10 EFILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPHI---DPPTLDSSYFFLYLLPPIVLDAGYFMPQ 86 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCCC---ccCCcCHHHHHHHHHHHHHHHHHhcCCH
Confidence 34555566666777778776644 6999999999999999976543322 2356789999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCHHHHHHhhhhcccccHHHHHHHhccCCCc-chhHhh
Q 043481 106 KQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGM--TSLRIQDFLAIGAILSATDSVCTLQVLSQDETP-FLYSIV 182 (351)
Q Consensus 106 ~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~--~~~~~~~alllGailsaTdp~~v~~il~~~~~~-~l~~ll 182 (351)
+++||++++++.+|++|++++++++|..+|++.+..+. .++||..|+++||++|||||+++.+++|+.+.| |+.+++
T Consensus 87 ~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v~~~L~~ll 166 (559)
T TIGR00840 87 RNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKLYIII 166 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCCCcchhhhe
Confidence 99999999999999999999999999999977653332 267999999999999999999999999999987 799999
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcc---CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHH
Q 043481 183 FGEGVVNDATSIVLFNAIQSFDFN---NIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPM 259 (351)
Q Consensus 183 ~ges~~nD~~~iil~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~ 259 (351)
+|||++||++++++|..+..+... +.+..++......++...++|+++|+++|++..++.|+.. +.+..+..++
T Consensus 167 ~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~---~~~~~e~~l~ 243 (559)
T TIGR00840 167 FGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTH---HIRQIEPLFV 243 (559)
T ss_pred ehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccchhHHHHH
Confidence 999999999999999988877542 2233344445566677778899999999999999998763 3346788999
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-ccchh
Q 043481 260 MLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDI-DKWKA 335 (351)
Q Consensus 260 l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~~-~~~~~ 335 (351)
+.++|++|++||.+|.||++|+++||++++++.+++.++++++..+++|+.+++++|+++|+++|+++... ..|++
T Consensus 244 l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~~ 320 (559)
T TIGR00840 244 FLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNW 320 (559)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHH
Confidence 99999999999999999999999999999998888888999999999999999999999999999987544 34554
No 3
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=100.00 E-value=7.1e-41 Score=335.30 Aligned_cols=274 Identities=21% Similarity=0.348 Sum_probs=235.7
Q ss_pred HHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHH
Q 043481 39 IIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLF 118 (351)
Q Consensus 39 ~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~l 118 (351)
......+.|+.++|+++++++.|+++||..... ..++||+.+..+++|+++|++|+++|++++||+++++..+
T Consensus 10 ~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~-------~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~l 82 (525)
T TIGR00831 10 ATAVAVTVKFIRLPYPIALILAGLLLGLAGLLP-------EVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALI 82 (525)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHhccccC-------CCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 333455566678999999999999999864321 1346788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCCCc-chhHhhhhhhhhhhHHHHHHH
Q 043481 119 GICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETP-FLYSIVFGEGVVNDATSIVLF 197 (351)
Q Consensus 119 a~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~~~-~l~~ll~ges~~nD~~~iil~ 197 (351)
++++++++++.++..+|++. ++||..|+++|++++||||+++.+++|+.+.| |+.++++|||++||++++++|
T Consensus 83 a~~~vlit~~~v~~~~~~~~------~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~gESllND~~alvlf 156 (525)
T TIGR00831 83 AFLLVVVTTVVVGFSLNWIL------GIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGAALVVF 156 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhhhhhhcchHHHHHH
Confidence 99999999999998888754 88999999999999999999999999999988 799999999999999999999
Q ss_pred HHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcch
Q 043481 198 NAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSG 277 (351)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sg 277 (351)
.+...+..++. ..+.......+++...+|+++|+++|++..++.|+. .+++..+..+++..+|.+|++||.+|.||
T Consensus 157 ~~~~~~~~~~~-~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~---~~~~~~~~~l~l~~~~~~y~lAe~lg~Sg 232 (525)
T TIGR00831 157 AIAVAVALGKG-VFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAK---IDDPLVEIALTILAPFAGFLLAERFHFSG 232 (525)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 98887764311 122334566778888889999999998888877543 34455678899999999999999999999
Q ss_pred HHHHHHHHHHhhhcccc-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 043481 278 ILTIFFCGIIMSHYTWH-NVTESSRITTKHAFATISFIAETFIFLYVFMDALD 329 (351)
Q Consensus 278 ila~~v~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~ 329 (351)
++|++++|++++|+.++ +.+++.+...+++|+.+++++|+++|+++|++++.
T Consensus 233 ilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~ 285 (525)
T TIGR00831 233 VIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPG 285 (525)
T ss_pred HHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998766 67788888899999999999999999999999865
No 4
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-40 Score=323.15 Aligned_cols=307 Identities=21% Similarity=0.296 Sum_probs=252.3
Q ss_pred HHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHH
Q 043481 31 FFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFK 110 (351)
Q Consensus 31 ~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~ 110 (351)
...++......+.+.+| .++|+...+++.|++.|+........ ..+.++|.+..+++|+++|++|+|+|++++||
T Consensus 11 ~~lil~l~~~~~~~~~~-l~~~~i~~~ll~g~i~g~~~l~~~~~----~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~ 85 (429)
T COG0025 11 LLLILLLGLLVSVLAGR-LLLPEIPLLLLLGLLGGPPGLNLISP----DLELDPELFLVLFLAILLFAGGLELDLRELRR 85 (429)
T ss_pred HHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHhhhhhccccc----cccCChHHHHHHHHHHHHHHhHhcCCHHHHHH
Confidence 33434444444444444 56899999999999999865433221 23557888899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCCCc-chhHhhhhhhhhh
Q 043481 111 NFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETP-FLYSIVFGEGVVN 189 (351)
Q Consensus 111 ~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~~~-~l~~ll~ges~~n 189 (351)
+++++..++++++++++...+...|++++ ++|+..|+++||+++||||+++.+++|+.+.| |++++++|||++|
T Consensus 86 ~~~~I~~La~~~v~it~~~~g~~~~~l~~-----~i~~~~a~l~gAilspTDPv~v~~i~~~~~vp~ri~~iL~gESl~N 160 (429)
T COG0025 86 VWRSILVLALPLVLITALGIGLLAHWLLP-----GIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTILEGESLLN 160 (429)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----ChhHHHHHHHhHHhcCCCchhhHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999864 78999999999999999999999999999988 7999999999999
Q ss_pred hHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcchHHHHHHHHHHHH
Q 043481 190 DATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRH-STDREGAPMMLMAYLSCI 268 (351)
Q Consensus 190 D~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~~~-~~~~~~~l~l~~~~~~~~ 268 (351)
|++++++|.+......++.+. +..+....+++...+|+++|.+.|++..++.|++.+++. ++..+..+++..++.+|.
T Consensus 161 D~~giv~f~~~l~~~~~~~~~-~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~~~ 239 (429)
T COG0025 161 DGVGIVLFKVALAALLGTGAF-SLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYL 239 (429)
T ss_pred hHHHHHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHH
Confidence 999999999988876543221 144578889999999999999999999999999864321 245578999999999999
Q ss_pred HHHhcCcchHHHHHHHHHHhhhccccCCCh-hHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHH
Q 043481 269 LAELLNLSGILTIFFCGIIMSHYTWHNVTE-SSRITTKHAFATISFIAETFIFLYVFMDALDIDKWKASNARNIFAVSST 347 (351)
Q Consensus 269 ~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~~~~~~~~~~~~~~~~~~~ 347 (351)
.||.+|.||++|++++|++.+++.+.+.++ +.|.+.+++||.+++++|.++|+++|.+++....+...+.+++++...+
T Consensus 240 ~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l~~~~~~ 319 (429)
T COG0025 240 LAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAV 319 (429)
T ss_pred HHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999997333333333 5578889999999999999999999999977655555455555554444
Q ss_pred H
Q 043481 348 M 348 (351)
Q Consensus 348 ~ 348 (351)
+
T Consensus 320 ~ 320 (429)
T COG0025 320 L 320 (429)
T ss_pred H
Confidence 3
No 5
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=100.00 E-value=3.6e-38 Score=318.76 Aligned_cols=304 Identities=16% Similarity=0.181 Sum_probs=239.6
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHh-hccCCCccccccChhHHHHhhhH
Q 043481 15 VSASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLL-ASKDRSSHLLVFNEDLFFLYLLP 93 (351)
Q Consensus 15 ~~~~~~~~~~~~~l~i~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~-~~~~~~~~~~~~~~~~~~~i~L~ 93 (351)
|+.-+....+.. +.++...+++..+++.+++++.++|+++.++++|+++||.... +++....+.-.+..+ +.++.++
T Consensus 3 w~~l~~~~~~l~-~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~le-IteIvL~ 80 (810)
T TIGR00844 3 WEQLEVTKAHVA-YSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLE-ISRILLC 80 (810)
T ss_pred cccccccchhhH-HHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHH-HHHHHHH
Confidence 555556666654 4444555666777799999888999999999999999997653 332211100011112 7789999
Q ss_pred HHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhcc-
Q 043481 94 PIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQ- 172 (351)
Q Consensus 94 ~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~- 172 (351)
+++|.+|+++|++++||+|+.+..++++++.++++++++++|++++ +++|..|+++||+++||||+.+.++++.
T Consensus 81 I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~-----GL~~~~ALLLGAILAPTDPVLAssV~kg~ 155 (810)
T TIGR00844 81 LQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVP-----GLNFPASLLMGACITATDPVLAQSVVSGT 155 (810)
T ss_pred HHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHhhhcCCcHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999998753 8899999999999999999999999983
Q ss_pred --CCCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhcc-C-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 173 --DETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFN-N-IDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYF 247 (351)
Q Consensus 173 --~~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~ 247 (351)
.+.| |+++++++||++||+++++++.+.+.+... + .......+.+..+++.+++|+++|+++|++.+++.++..+
T Consensus 156 ~~~rvP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~r 235 (810)
T TIGR00844 156 FAQKVPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEG 235 (810)
T ss_pred ccccCChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566 799999999999999999988876655432 1 1111112346788999999999999999999999998853
Q ss_pred hcc-CCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 043481 248 LRH-STDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMD 326 (351)
Q Consensus 248 ~~~-~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~ 326 (351)
++. .++....+.+.+++++|..++.+|+||++|+|+||++++|..+. .+ +.+...+|+.++.+++..+|+++|+.
T Consensus 236 r~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~--~~--~~~~~~f~e~ie~LLn~~lFVlLGa~ 311 (810)
T TIGR00844 236 KNIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWF--AQ--KTHESNVSNVIDVLLNYAYFVYLGSI 311 (810)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccch--hh--hHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 222 22344566788899999999999999999999999999986542 11 22345699999999999999999999
Q ss_pred ccc
Q 043481 327 ALD 329 (351)
Q Consensus 327 ~~~ 329 (351)
+++
T Consensus 312 L~~ 314 (810)
T TIGR00844 312 LPW 314 (810)
T ss_pred hCH
Confidence 864
No 6
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=314.27 Aligned_cols=318 Identities=31% Similarity=0.546 Sum_probs=266.9
Q ss_pred hccccccccccchhHHHHHHHHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHh
Q 043481 12 ALKVSASFLNTSTIIALSVFFTLLCACIIIGHLIEENR-WANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLY 90 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~l~i~~~ll~~~~~~~~~l~~~~-~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i 90 (351)
++-|++.....+....+ ++.+...+.+..|+..+.+ .+|+++.++++|+++|.+........ ...++++.++.+
T Consensus 30 ~~~~~w~~V~~p~vi~l--wil~asLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~---~~~L~s~vFFly 104 (670)
T KOG1966|consen 30 VVTWDWEHVHIPYVITL--WILVASLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIA---PFFLESDVFFLY 104 (670)
T ss_pred ceEEehhhccCchhhHH--HHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccc---cccccccchhhh
Confidence 34455555555554444 4445555777788886644 48999999999999999876554332 245678999999
Q ss_pred hhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCCCHHHHHHhhhhcccccHHHHHH
Q 043481 91 LLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFK--KMGMTSLRIQDFLAIGAILSATDSVCTLQ 168 (351)
Q Consensus 91 ~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~--~~g~~~~~~~~alllGailsaTdp~~v~~ 168 (351)
.||+|++++|+-++.|.|..|..+++.+|++|++..++..|..+|.+.. .+|. ..++.+-+++|+++|+.||++|++
T Consensus 105 LLPPIvlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~-~~glld~LlFgSLIsAVDPVAVLa 183 (670)
T KOG1966|consen 105 LLPPIVLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGM-SIGLLDILLFGSLISAVDPVAVLA 183 (670)
T ss_pred hcCHHHhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CchHHHHHHHHHHHHhcCchhhhh
Confidence 9999999999999999999999999999999999999999888776543 2332 267999999999999999999999
Q ss_pred HhccCCCcc-hhHhhhhhhhhhhHHHHHHHHHHHhhhc---cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 169 VLSQDETPF-LYSIVFGEGVVNDATSIVLFNAIQSFDF---NNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKT 244 (351)
Q Consensus 169 il~~~~~~~-l~~ll~ges~~nD~~~iil~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~ 244 (351)
+++|.++.+ +..++.|||++||++.+++|+.+.++.. ++..+.+......+|+...+||+++|+++|++.+..+|.
T Consensus 184 VFEEihVNe~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkf 263 (670)
T KOG1966|consen 184 VFEEIHVNEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKF 263 (670)
T ss_pred hhhhhccccEEEeeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHh
Confidence 999999875 8999999999999999999998887753 244444444556777788899999999999999999997
Q ss_pred HHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043481 245 LYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVF 324 (351)
Q Consensus 245 ~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG 324 (351)
. ++.+..|+.+.+.++|++|+.||.+|+||++|..+||+.+++|.+.|++++++..++.+.+++++..|+++|+++|
T Consensus 264 t---~~vrviePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLG 340 (670)
T KOG1966|consen 264 T---KHVRVLEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLG 340 (670)
T ss_pred h---cceeeecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeeh
Confidence 7 5677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccc-cchhhHH
Q 043481 325 MDALDID-KWKASNA 338 (351)
Q Consensus 325 ~~~~~~~-~~~~~~~ 338 (351)
.+..+.. .|++..+
T Consensus 341 vs~v~~~h~wd~~Fi 355 (670)
T KOG1966|consen 341 VSTVSSNHHWDFAFI 355 (670)
T ss_pred hhhcCCcceeehhhh
Confidence 9987653 4555433
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1.1e-35 Score=301.25 Aligned_cols=290 Identities=18% Similarity=0.171 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHh
Q 043481 32 FTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKN 111 (351)
Q Consensus 32 ~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~ 111 (351)
..+++.+.+.+.+.+| .++|.+++++++|+++||......+..+. + ..+.+.++++++++|++|+|+|++.+||+
T Consensus 12 ~~ll~l~~~~~~l~~r-~~~P~ll~~il~GillGp~~lg~i~~~~~---~-~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~ 86 (562)
T PRK05326 12 ALLLLLSILASRLSSR-LGIPSLLLFLAIGMLAGEDGLGGIQFDNY---P-LAYLVGNLALAVILFDGGLRTRWSSFRPA 86 (562)
T ss_pred HHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhCccccCCcccCcH---H-HHHHHHHHHHHHHHHcCccCCCHHHHHHH
Confidence 3444445555555444 67999999999999999976542211111 1 12568899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCC--Cc-chhHhhhhhhhh
Q 043481 112 FTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDE--TP-FLYSIVFGEGVV 188 (351)
Q Consensus 112 ~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~--~~-~l~~ll~ges~~ 188 (351)
+++++.+++.++++++..++..+++++ +++|..|+++|+++++|||+++.++++|.+ .+ |+++++++||++
T Consensus 87 ~~~~~~la~~gv~~t~~~~g~~~~~l~------g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~ 160 (562)
T PRK05326 87 LGPALSLATLGVLITAGLTGLFAHWLL------GLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGS 160 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhc
Confidence 999999999999999988888888876 889999999999999999999999999988 66 799999999999
Q ss_pred hhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHH
Q 043481 189 NDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCI 268 (351)
Q Consensus 189 nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 268 (351)
||+.+++++.+...+..++.+..++ ..+..++.++.+++++|+++|+...++.++.+ ++.+..+..+.++.++++|+
T Consensus 161 nD~~ai~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~--~~~~~~~~i~~l~~~l~~~~ 237 (562)
T PRK05326 161 NDPMAVFLTITLIELITGGETGLSW-GFLLLFLQQFGLGALIGLLGGWLLVQLLNRIA--LPAEGLYPILVLAGALLIFA 237 (562)
T ss_pred ccHHHHHHHHHHHHHHhCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHHHH
Confidence 9999999999887765433221122 23556777888888888888888888887652 12234567788999999999
Q ss_pred HHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHH
Q 043481 269 LAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDIDKWKASNARN 340 (351)
Q Consensus 269 ~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~~~~~~~~~~~~ 340 (351)
+||.+|.||++|++++|++++|.+. +.+++.+++++.+++++++++|+++|+.+......+..+.++
T Consensus 238 ~a~~lg~Sg~la~~iaGl~l~n~~~-----~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l 304 (562)
T PRK05326 238 LTAALGGSGFLAVYLAGLVLGNRPI-----RHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPAL 304 (562)
T ss_pred HHHHHCCcHHHHHHHHHHHHhCCcc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999998542 334567899999999999999999999985543333333333
No 8
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-32 Score=255.95 Aligned_cols=301 Identities=19% Similarity=0.166 Sum_probs=252.3
Q ss_pred HHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHH
Q 043481 31 FFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFK 110 (351)
Q Consensus 31 ~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~ 110 (351)
...+++...++...+..|..+|-.+..+..|++.|.-.....+..+.+ + ...+.+++|..|+|++|++.+++.+|.
T Consensus 11 ~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~---~-Ay~vg~lALaiILfdgG~~T~lss~r~ 86 (574)
T COG3263 11 LGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYP---F-AYMVGNLALAIILFDGGFGTQLSSFRV 86 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccccCccH---H-HHHHHHHHHHHHhhcCccCCcHHHHHH
Confidence 333444444444444444679999999999999997443322222211 1 245678999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCCCc-chhHhhhhhhhhh
Q 043481 111 NFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETP-FLYSIVFGEGVVN 189 (351)
Q Consensus 111 ~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~~~-~l~~ll~ges~~n 189 (351)
..++.+.++++|+++|....+..++|++ +.+|.+++++||++.+||.++|.+++++.+.+ |+++++|-||+-|
T Consensus 87 a~~palsLATlGVl~Ts~Ltg~aA~~ll------~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl~erv~stLEiESGtN 160 (574)
T COG3263 87 AAGPALSLATLGVLITSGLTGVAAAYLL------NLDWLEGLLIGAIVGSTDAAAVFSLLGGKNLNERVASTLEIESGSN 160 (574)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHhhccccHHHHHHHHccCChhhhhhhhEEeecCCC
Confidence 9999999999999999999999999998 89999999999999999999999999998876 8999999999999
Q ss_pred hHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHH
Q 043481 190 DATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCIL 269 (351)
Q Consensus 190 D~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 269 (351)
|+.++.+.-.+..+..++.+..++.. +..+++++..|.++|+..|++..++.+|. +-+.-..+.+.++..++.|.+
T Consensus 161 DPmAvfLTitlieli~~get~l~~~~-ll~f~~q~glG~l~G~~gg~l~~~~Inr~---nLd~GL~pil~la~~Ll~fs~ 236 (574)
T COG3263 161 DPMAVFLTITLIELIAGGETNLSWGF-LLGFLQQFGLGLLLGLGGGKLLLQLINRI---NLDSGLYPILALAGGLLIFSL 236 (574)
T ss_pred CceeeehhHHHHHHHhccccccCHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHhh---ccccchhHHHHHHHHHHHHHH
Confidence 99999998888777655433233333 44488999999999999999999999876 234556789999999999999
Q ss_pred HHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHh
Q 043481 270 AELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDIDKWKASNARNIFAVSSTMF 349 (351)
Q Consensus 270 ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~~~~~~~~~~~~~~~~~~~~i 349 (351)
++.+|+||++|+++||+..+|.. -+.|+.+.+++|-+++++....|...|..+...+.|.....++.+++..+++
T Consensus 237 t~aiGGsG~LaVYl~Gll~GN~~-----i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mifv 311 (574)
T COG3263 237 TGAIGGSGILAVYLAGLLLGNRP-----IRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIFV 311 (574)
T ss_pred HHHhcCcccHHHHHHHHHhCCCc-----chhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHHH
Confidence 99999999999999999999864 4677888999999999999999999999998888999999999999888776
Q ss_pred c
Q 043481 350 S 350 (351)
Q Consensus 350 ~ 350 (351)
+
T Consensus 312 a 312 (574)
T COG3263 312 A 312 (574)
T ss_pred H
Confidence 4
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.97 E-value=5.1e-29 Score=231.01 Aligned_cols=267 Identities=16% Similarity=0.191 Sum_probs=204.0
Q ss_pred HHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHH
Q 043481 38 CIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLL 117 (351)
Q Consensus 38 ~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~ 117 (351)
+.+.+.+.+| .++|+++++++.|+++||......++. + .-+.+.++++.+++|.+|+|+|++++||++++...
T Consensus 4 a~~~~~l~~~-l~lP~~v~~il~GillGp~~lg~i~~~--~----~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~ 76 (273)
T TIGR00932 4 AVLAVPLSRR-LGIPSVLGYLLAGVLIGPSGLGLISNV--E----GVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFG 76 (273)
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHHhCcccccCCCCh--H----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3344555555 679999999999999999754432211 1 12457889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCCC-c-chhHhhhhhhhhhhHHHHH
Q 043481 118 FGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDET-P-FLYSIVFGEGVVNDATSIV 195 (351)
Q Consensus 118 la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~~-~-~l~~ll~ges~~nD~~~ii 195 (351)
++..++++++..++...++.+ ++++..++++|+++++|||+++.++++|.+. + +.++++.+|+.+||..+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~ 150 (273)
T TIGR00932 77 VGVLQVLVPGVLLGLLLGHLL------GLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVP 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHH
Confidence 999999999777776556555 7899999999999999999999999999984 4 7999999999999999999
Q ss_pred HHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCc
Q 043481 196 LFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNL 275 (351)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~ 275 (351)
++.+.....++.... ...............++.+.+.++...|..|+..+ +++++.+...++..++..+.++|.+|.
T Consensus 151 ~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~la~~~g~ 227 (273)
T TIGR00932 151 LLALLPLLATSASTE--HVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAE-LRPSELFTAGSLLLMFGSAYFADLLGL 227 (273)
T ss_pred HHHHHHHHhcCCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHhCC
Confidence 998887665432111 11122223333444455566666777777776543 233455677788888999999999999
Q ss_pred chHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 043481 276 SGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDA 327 (351)
Q Consensus 276 Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~ 327 (351)
|+.++++++|++++|..+ +++.++..+.+..++.|++|+.+|+++
T Consensus 228 s~~lgaf~aGl~~~~~~~-------~~~l~~~l~~~~~~f~plFF~~~G~~~ 272 (273)
T TIGR00932 228 SMALGAFLAGVVLSESEY-------RHKLESDLEPIGGVLLPLFFISVGMSV 272 (273)
T ss_pred cHHHHHHHHHHHHcCCch-------HHHHHHHHHhHHHHHHHHHHHHhCccC
Confidence 999999999999997421 223445555566899999999999874
No 10
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.97 E-value=9.5e-29 Score=223.85 Aligned_cols=305 Identities=16% Similarity=0.189 Sum_probs=243.8
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHH-hhccCCCccccccChhHHHHhhh
Q 043481 14 KVSASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVL-LASKDRSSHLLVFNEDLFFLYLL 92 (351)
Q Consensus 14 ~~~~~~~~~~~~~~l~i~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~-~~~~~~~~~~~~~~~~~~~~i~L 92 (351)
+|++-+.+..+......... .....+++..++++..+.++....+.|+++||... ..++..+.+- +.-...+..+.|
T Consensus 2 aw~qleidkvh~al~~~g~F-~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~wgn~-d~it~ei~RvvL 79 (467)
T KOG4505|consen 2 AWRQLEIDKVHLALAASGGF-VSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSWGNK-DYITYEISRVVL 79 (467)
T ss_pred CchhhcccHHHHHHHHHhhH-HHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccccCc-chhhhhhhhhhH
Confidence 48888888887654433333 33344568899998889999999999999999765 4555443221 112234788999
Q ss_pred HHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhcc
Q 043481 93 PPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQ 172 (351)
Q Consensus 93 ~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~ 172 (351)
.+..|..+.|++.+++.++|++++.+..+.+...+++.+..+|.+.| ++++.++++++++++||||+...++..+
T Consensus 80 cvqvfava~eLPr~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p-----~lnf~~Sl~iaaCiTaTDPiLsssIV~~ 154 (467)
T KOG4505|consen 80 CVQVFAVAMELPRAYMLEHWRSIFVLLLPVMIIGWLVSFGFVYALIP-----NLNFLTSLLIAACITATDPILSSSIVGG 154 (467)
T ss_pred hHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHccCCchhHHHHHhcC
Confidence 99999999999999999999999999999888898888888887764 8899999999999999999999999986
Q ss_pred C----CCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 173 D----ETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNID---GTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKT 244 (351)
Q Consensus 173 ~----~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~ 244 (351)
. ++| |+|+++.+||+-||+.+++++.....+..++.. ..+ +.....++....|+++|.++|++.+...|+
T Consensus 155 g~~akrvPeriR~lL~AESGcNDGMaipflflai~Ll~h~~~r~~~rd--wv~~~iLyec~fg~llG~vIG~l~r~~lk~ 232 (467)
T KOG4505|consen 155 GKFAKRVPERIRNLLAAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRD--WVCDNILYECFFGCLLGCVIGYLSRQGLKF 232 (467)
T ss_pred chHhhhChHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCchhccCCc--eehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 367 899999999999999999998877766543221 223 366778899999999999999999999999
Q ss_pred HHHhccC-CCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 043481 245 LYFLRHS-TDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYV 323 (351)
Q Consensus 245 ~~~~~~~-~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~v 323 (351)
.+++|-. +++...+-+.+++.+.++.+.+|.+.++..|++|..+++.++.. ++++ ..+..+.++.+++..+|++.
T Consensus 233 aekkrlid~eSfl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFs--k~t~--~s~v~~viD~lls~sfF~yf 308 (467)
T KOG4505|consen 233 AEKKRLIDRESFLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFS--KKTK--ESRVSEVIDLLLSLSFFLYF 308 (467)
T ss_pred HHHhccccHHHHHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhh--hhhh--hccHHHHHHHHHHHHHHHHh
Confidence 8753322 33445566777888999999999999999999999999877642 2322 24677888899999999999
Q ss_pred hhhccccc
Q 043481 324 FMDALDID 331 (351)
Q Consensus 324 G~~~~~~~ 331 (351)
|..+++.+
T Consensus 309 Gaiipwsq 316 (467)
T KOG4505|consen 309 GAIIPWSQ 316 (467)
T ss_pred ccccchhh
Confidence 99997643
No 11
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=99.95 E-value=2.5e-30 Score=250.53 Aligned_cols=271 Identities=25% Similarity=0.327 Sum_probs=57.3
Q ss_pred HHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHH
Q 043481 38 CIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLL 117 (351)
Q Consensus 38 ~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~ 117 (351)
+.+.+.. .||.++|+++++++.|+++||......++. +.+.+.+.++++++++|++|+|+|.+++||++++...
T Consensus 8 ~~~~~~l-~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~-----~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~ 81 (380)
T PF00999_consen 8 AFVAGIL-FRRLGIPSIIGYILVGIVLGPSGLGLLEPD-----NPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALA 81 (380)
T ss_dssp ----------------------------------------------S-SSHHHHS--SSHHHHTTGGGG-----------
T ss_pred HHHHHHH-HHHhCCCHHHHHHHheeehhhhhhhhccch-----hhHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 3343444 455679999999999999999876532221 1133568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccC-CCc-chhHhhhhhhhhhhHHHHH
Q 043481 118 FGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQD-ETP-FLYSIVFGEGVVNDATSIV 195 (351)
Q Consensus 118 la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~-~~~-~l~~ll~ges~~nD~~~ii 195 (351)
.+..++.+++...+...++.+ ...++++.+++++|+++++|||+.+.++++|. +.+ |.++++.+|+.+||..+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~ 158 (380)
T PF00999_consen 82 LGLVGFLLPFILVGFLLSFFL---FILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAII 158 (380)
T ss_dssp -----------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTT
T ss_pred cccceeeehhhHHHHHHHHhh---ccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhh
Confidence 999999999887676666311 00188999999999999999999999999664 455 7999999999999999999
Q ss_pred HHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCcchHHHHHHHHHHHHHHHhcC
Q 043481 196 LFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFL-RHSTDREGAPMMLMAYLSCILAELLN 274 (351)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~-~~~~~~~~~l~l~~~~~~~~~ae~~g 274 (351)
++.+.....+++ ...+.......++.. +..|.+.|+...|+.++..++ +++++.+...++..++..|+++|.+|
T Consensus 159 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g 233 (380)
T PF00999_consen 159 LLSILISLAQAS-GQSSLGQLLLSFLWI----ILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLAEILG 233 (380)
T ss_dssp TT------------------------------------------------------------------------------
T ss_pred hhhhhhhhhccc-ccccccchhcchhhh----hhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhcccccccc
Confidence 999887776221 122223334444444 444555555555555554432 24566788889999999999999999
Q ss_pred cchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 043481 275 LSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDAL 328 (351)
Q Consensus 275 ~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~ 328 (351)
.|++++++++|+.+++.+.+ ++.+++.+++++ .++++++|+.+|++++
T Consensus 234 ~s~~l~af~~Gl~~~~~~~~---~~~~~~l~~~~~---~~~~~lfF~~iG~~~~ 281 (380)
T PF00999_consen 234 LSGILGAFIAGLILSNSPFA---ERLEEKLESFWY---GFFIPLFFVFIGMSLD 281 (380)
T ss_dssp ------------------------------------------------------
T ss_pred ccccceeeeeehcccccccc---chhhhcccchhh---HHHhhHHhhhhccccc
Confidence 99999999999999954332 234444555554 7999999999999986
No 12
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.5e-24 Score=210.49 Aligned_cols=281 Identities=20% Similarity=0.208 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHH
Q 043481 28 LSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQ 107 (351)
Q Consensus 28 l~i~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~ 107 (351)
+.....++..+.+.+.+++| .++|+++++++.|+++||.......+.+ + .-+.+.++++.+++|.+|+|.|.++
T Consensus 8 l~~~~iiL~~a~i~~~l~~r-l~lp~vlg~llaGiilGp~~~~~~~~~~-~----~i~~laelGvi~LlF~~GLE~~~~~ 81 (397)
T COG0475 8 LLQLLILLLVAVILGPLFKR-LGLPPVLGYLLAGIILGPWGLLLIIESS-E----IIELLAELGVVFLLFLIGLEFDLER 81 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHhcCcccccccCCch-H----HHHHHHHHhHHHHHHHHHHCcCHHH
Confidence 44455666777777766666 5699999999999999993222221111 1 1145889999999999999999999
Q ss_pred HHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCC-Cc-chhHhhhh
Q 043481 108 FFKNFTT-MLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDE-TP-FLYSIVFG 184 (351)
Q Consensus 108 l~~~~~~-i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~-~~-~l~~ll~g 184 (351)
+||++++ ....+..+............+..+ ++++..++++|++++.||.+.+.++++|.| .+ |..+.+.+
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~ 155 (397)
T COG0475 82 LKKVGRSVGLGVAQVGLTAPFLLGLLLLLGIL------GLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILG 155 (397)
T ss_pred HHHhchhhhhhHHHHHHHHHHHHHHHHHHHHh------ccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 9999999 555565555444332221222123 789999999999999999999999999987 44 79999999
Q ss_pred hhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCCcchHHHHHHH
Q 043481 185 EGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLG-LLSAYIIKTLYFLRHSTDREGAPMMLMA 263 (351)
Q Consensus 185 es~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G-~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 263 (351)
...++|..+++++.++.....++...... ..........-.++-...| ++..++.|+..+ .+.++.....++.++
T Consensus 156 ~~i~~Di~~i~lLai~~~l~~~g~~~~~~---~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~-~~~~e~~~~~~l~i~ 231 (397)
T COG0475 156 ALVFDDIAAILLLAIVPALAGGGSGSVGF---ILGLLLAILAFLALLLLLGRYLLPPLFRRVAK-TESSELFILFVLLLV 231 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCccHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHH
Confidence 99999999999999988886543222111 1111111111112222223 445555555532 244555677888899
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHH-HHHHHHHHHhhhhcccc
Q 043481 264 YLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISF-IAETFIFLYVFMDALDI 330 (351)
Q Consensus 264 ~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Fv~vG~~~~~~ 330 (351)
+...+++|..|.|.++++|.+|+.+++...+ +++.++-.+.+.+ ++-|+||+.+|+.++..
T Consensus 232 l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~------~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~ 293 (397)
T COG0475 232 LGAAYLAELLGLSMILGAFLAGLLLSESEYR------KHELEEKIEPFGDGLFIPLFFISVGMSLDLG 293 (397)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHhcccccc------hHHHHHHHHhHHhHHHHHHHHHHhhHHcCHH
Confidence 9999999999999999999999999975322 1455666777777 99999999999998543
No 13
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.94 E-value=3e-24 Score=219.31 Aligned_cols=274 Identities=16% Similarity=0.098 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHH
Q 043481 30 VFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFF 109 (351)
Q Consensus 30 i~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~ 109 (351)
....++..+.+...+.+| .++|.+++++++|+++||......+.. . +-+.+.++++.+++|..|+|+|++++|
T Consensus 9 ~~~~~l~~a~i~~~l~~r-l~lp~vlgyilaGillGP~~lg~i~~~--~----~i~~laelGvv~LlF~iGLEl~~~~l~ 81 (621)
T PRK03562 9 QALIYLGAAVLIVPIAVR-LGLGSVLGYLIAGCIIGPWGLRLVTDV--E----SILHFAEFGVVLMLFVIGLELDPQRLW 81 (621)
T ss_pred HHHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHHhCcccccCCCCH--H----HHHHHHHHHHHHHHHHHHhCcCHHHHH
Confidence 334445555555565555 679999999999999999765433211 1 124588999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCCC-c-chhHhhhhhhh
Q 043481 110 KNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDET-P-FLYSIVFGEGV 187 (351)
Q Consensus 110 ~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~~-~-~l~~ll~ges~ 187 (351)
+.+++++.++..++.+++...+...++ + +++|..|+++|.+++.||++.+.++++|.+. + +.++...+..+
T Consensus 82 ~~~~~~~~~g~~qv~~~~~~~~~~~~~-~------g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll 154 (621)
T PRK03562 82 KLRRSIFGGGALQMVACGGLLGLFCML-L------GLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILL 154 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-h------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHH
Confidence 999999999999998888766555444 3 7899999999999999999999999999873 3 78999999999
Q ss_pred hhhHHHHHHHHHHHhhhccCCc--hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCCCcchHHHHHHHH
Q 043481 188 VNDATSIVLFNAIQSFDFNNID--GTVALNLLGTFLYLYFTSTALGIVLGL-LSAYIIKTLYFLRHSTDREGAPMMLMAY 264 (351)
Q Consensus 188 ~nD~~~iil~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~i~~G~~~G~-~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 264 (351)
+||..+++++.++..+...+.+ ....+.... ..++.++..++.|. +..++.++..+ ++.++.....++.+++
T Consensus 155 ~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~l~~~~~~-~~~~e~~~~~~l~lv~ 229 (621)
T PRK03562 155 FQDIAAIPLVAMIPLLAASGASTTLGAFALSAL----KVAGALALVVLGGRYVTRPALRFVAR-SGLREVFTAVALFLVF 229 (621)
T ss_pred HHHHHHHHHHHHHHHHccCCCccchhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHH
Confidence 9999999998876555432111 111111111 11222222233332 34455555432 2334445566777788
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 043481 265 LSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALD 329 (351)
Q Consensus 265 ~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~ 329 (351)
++.+++|.+|+|..+++|++|+++++. +.+++.++-.+.+..++.++||+.+|+.+..
T Consensus 230 ~~a~la~~~Gls~~lGAFlAGl~l~~~-------~~~~~le~~i~pf~~lll~lFFi~vG~~id~ 287 (621)
T PRK03562 230 GFGLLMEEVGLSMALGAFLAGVLLASS-------EYRHALESDIEPFKGLLLGLFFIAVGMSIDF 287 (621)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHhcCC-------ccHHHHHHHHHHHHHHHHHHHHHHhhhhccH
Confidence 899999999999999999999999963 2344455556666678899999999999753
No 14
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.93 E-value=1.5e-23 Score=213.74 Aligned_cols=270 Identities=14% Similarity=0.091 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhh
Q 043481 33 TLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNF 112 (351)
Q Consensus 33 ~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~ 112 (351)
.++..+.+...+.+| .++|.+++++++|+++||......+... +-+.+.++++.+++|..|+|+|++++|+.+
T Consensus 12 ~~l~~a~~~~~l~~r-l~~p~ilg~ilaGillGP~~lg~i~~~~------~i~~laelGvv~LLF~iGLel~~~~l~~~~ 84 (601)
T PRK03659 12 LFLFAAVVAVPLAQR-LGIGAVLGYLLAGIAIGPWGLGFISDVD------EILHFSELGVVFLMFIIGLELNPSKLWQLR 84 (601)
T ss_pred HHHHHHHHHHHHHHH-hCCChHHHHHHHHHHhccccccCCCcHH------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 344444454555555 6799999999999999997654332110 124578999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCCCc--chhHhhhhhhhhhh
Q 043481 113 TTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETP--FLYSIVFGEGVVND 190 (351)
Q Consensus 113 ~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~~~--~l~~ll~ges~~nD 190 (351)
+.++.++..++++++.+.+...++ + +++|..++++|..++.||++.+.++++|.+.. +.+++..+..++||
T Consensus 85 ~~~~~~g~~~v~~t~~~~~~~~~~-~------g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~D 157 (601)
T PRK03659 85 RSIFGVGAAQVLLSAAVLAGLLML-T------DFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQD 157 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-H------ccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHH
Confidence 999999999999998776655443 3 78999999999999999999999999998843 68889999999999
Q ss_pred HHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHH
Q 043481 191 ATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLG-LLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCIL 269 (351)
Q Consensus 191 ~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G-~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 269 (351)
..+++++.+...+...+.+...+..... . ...++..++.| ++..++.++..+ .+.++.....++.+++++.++
T Consensus 158 i~~i~ll~l~~~l~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~l~~vl~~a~l 231 (601)
T PRK03659 158 LAVIPALALVPLLAGSADEHFDWMKIGM----K-VLAFAGMLIGGRYLLRPLFRFIAA-SGVREVFTAAALLLVLGSALF 231 (601)
T ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHH
Confidence 9999888876555432221111211111 1 11111112223 233444444422 233444556666677888889
Q ss_pred HHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 043481 270 AELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALD 329 (351)
Q Consensus 270 ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~ 329 (351)
+|.+|+|+.+++|++|+++++. +.+++.++-.+.+..++.++||+.+|+.+..
T Consensus 232 ~~~~Gls~~LGAFlaGl~l~~s-------~~~~~l~~~i~pf~~lll~lFFi~vGm~id~ 284 (601)
T PRK03659 232 MDALGLSMALGTFIAGVLLAES-------EYRHELEIAIEPFKGLLLGLFFISVGMALNL 284 (601)
T ss_pred HHHhCccHHHHHHHHHHHhcCC-------chHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Confidence 9999999999999999999973 2233344444555568899999999999754
No 15
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=99.93 E-value=5e-23 Score=215.83 Aligned_cols=287 Identities=13% Similarity=0.081 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCcccccc----ChhHHHHhhhHHHhhHhhhcCCHHH
Q 043481 32 FTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVF----NEDLFFLYLLPPIIFNAGFQVKKKQ 107 (351)
Q Consensus 32 ~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~----~~~~~~~i~L~~ilF~~gl~l~~~~ 107 (351)
.++++.+.+++.+++| .++|.+++++++|+++||......+......+.. .-+.+.++++.+++|.+|+|+|.+.
T Consensus 49 ~lil~~a~l~~~ll~r-l~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~ 127 (832)
T PLN03159 49 TLVVVTTRLLVFILKP-FRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISV 127 (832)
T ss_pred HHHHHHHHHHHHHHHh-cCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 3444555555555554 6799999999999999998765432211111111 1256889999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCCC--cchhHhhhhh
Q 043481 108 FFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDET--PFLYSIVFGE 185 (351)
Q Consensus 108 l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~~--~~l~~ll~ge 185 (351)
+||+.++.+..+..++++++.+.....+++ ...+........++++|.++|.|+..++.++++|.|. ++..++..+.
T Consensus 128 lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l-~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsa 206 (832)
T PLN03159 128 IRRTGKKALAIAIAGMALPFCIGLAFSFIF-HQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSA 206 (832)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHH
Confidence 999999999999999988876544444433 2211101123456889999999999999999999884 3799999999
Q ss_pred hhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHH
Q 043481 186 GVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYL 265 (351)
Q Consensus 186 s~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 265 (351)
+.+||..+++++.++..+...+...... +...+..+...++..++...+..|+.|+....++.++....+.+.++++
T Consensus 207 avv~Dl~~~ilLav~~~l~~~~~~~~~~---l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~ 283 (832)
T PLN03159 207 ALVNDMCAWILLALAIALAENDSTSLAS---LWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMI 283 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHH
Confidence 9999999999998776665432211111 1111111111122222333344455544321112233445567777788
Q ss_pred HHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 043481 266 SCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALD 329 (351)
Q Consensus 266 ~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~ 329 (351)
+.+++|.+|.|.++++|++|+++.+. +..+...+++-.....++.++||+.+|+.+..
T Consensus 284 ~a~lae~~Gl~~ilGAFlaGl~lp~~------~~~~~l~ekle~~~~~lflPlFFv~vGl~idl 341 (832)
T PLN03159 284 SGFITDAIGTHSVFGAFVFGLVIPNG------PLGVTLIEKLEDFVSGLLLPLFFAISGLKTNV 341 (832)
T ss_pred HHHHHHHhCccHHHHHHHHhhccCCc------chHHHHHHHHHHHHHHHHHHHHHHHhhheeeH
Confidence 88999999999999999999999852 11122233444444569999999999999743
No 16
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.91 E-value=3.7e-22 Score=202.60 Aligned_cols=277 Identities=15% Similarity=0.100 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHh
Q 043481 32 FTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKN 111 (351)
Q Consensus 32 ~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~ 111 (351)
..++..+.+++.+.+| .++|..++++++|+++||......+.. + ..+.+.++++.+++|.+|+|+|++++||.
T Consensus 12 ~~~l~~a~~~~~l~~r-l~~P~ivg~IlaGillGp~~lg~~~~~-----~-~~~~la~lGli~llF~~Gle~d~~~l~~~ 84 (558)
T PRK10669 12 VGGLVLAFILGMLANR-LRISPLVGYLLAGVLAGPFTPGFVADT-----K-LAPELAELGVILLMFGVGLHFSLKDLMAV 84 (558)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhCccccccccch-----H-HHHHHHHHHHHHHHHHhHhcCCHHHHHHH
Confidence 3444555555665555 679999999999999999765432211 1 13568999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCC-Cc-chhHhhhhhhhhh
Q 043481 112 FTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDE-TP-FLYSIVFGEGVVN 189 (351)
Q Consensus 112 ~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~-~~-~l~~ll~ges~~n 189 (351)
++.....+..+++.+.. .+...++.+ ++++..++++|++++.|+++++.++++|.+ .+ +..++..+.+.+|
T Consensus 85 ~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~ 157 (558)
T PRK10669 85 KSIAIPGAIAQIAVATL-LGMALSAVL------GWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVE 157 (558)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHH
Confidence 87766666666665554 333444444 789999999999999999999999999988 34 7999999999999
Q ss_pred hHHHHHHHHHHHhhhcc-CCchhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHH
Q 043481 190 DATSIVLFNAIQSFDFN-NIDGTVALNLLGTFLYLYFTS----TALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAY 264 (351)
Q Consensus 190 D~~~iil~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~----i~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 264 (351)
|..+++++.+...+... ..+..+.........+.+... ....++..+...|+.++..+ ++.++......+..++
T Consensus 158 Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~e~~~l~~l~~~l 236 (558)
T PRK10669 158 DLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAA-TGSRELFTLSVLALAL 236 (558)
T ss_pred HHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHH
Confidence 99998888766544321 000111111111111111211 22233333444555555432 2222333333444455
Q ss_pred HHH-HHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 043481 265 LSC-ILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDI 330 (351)
Q Consensus 265 ~~~-~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~~ 330 (351)
+.. ..+|.+|+|+.+++|++|+++++.. .+++..+-...+..++.++||+.+|+++...
T Consensus 237 ~~a~~~~~~lGls~~lGAflaGl~l~~~~-------~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~ 296 (558)
T PRK10669 237 GIAFGAVELFDVSFALGAFFAGMVLNESE-------LSHRAAHDTLPLRDAFAVLFFVSVGMLFDPM 296 (558)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHhCCh-------hHHHHHHHHhhHHHHHHHHHHHHhhhhcCHH
Confidence 443 4579999999999999999998632 1222222222345678999999999997543
No 17
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.61 E-value=1e-13 Score=125.08 Aligned_cols=278 Identities=17% Similarity=0.188 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHH
Q 043481 28 LSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQ 107 (351)
Q Consensus 28 l~i~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~ 107 (351)
+...+..+..+.++|.+-.| .|+|+.++++++|++.||+.......+ ++. +.+.++.+..++|..|++.+.++
T Consensus 8 i~tiv~gl~lAFl~G~lA~r-lrlsPLVGyL~AGv~~gpftpGFvad~-----~La-~~LAelGViLLmFgvGLhfslkd 80 (408)
T COG4651 8 ITTIVGGLVLAFLLGALANR-LRLSPLVGYLLAGVLAGPFTPGFVADQ-----TLA-PELAELGVILLMFGVGLHFSLKD 80 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHhcCCCCCCcccch-----hHH-HHHHHhhHHHHHHhcchheeHHH
Confidence 33444556667776665555 679999999999999999875543222 112 35799999999999999999998
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCCC--cchhHhh
Q 043481 108 FFKNFTTMLLFGICGTVISFYLI---SVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDET--PFLYSIV 182 (351)
Q Consensus 108 l~~~~~~i~~la~~g~~~~~~~~---~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~~--~~l~~ll 182 (351)
+...+. ++++|.+...... +...-+.. ||++...+.+|-.+|-.|.++..+-++|.+. ++-+++-
T Consensus 81 LLavk~----iAipgAl~qia~at~lg~gL~~~l------gws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iA 150 (408)
T COG4651 81 LLAVKA----IAIPGALAQIALATLLGMGLSSLL------GWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIA 150 (408)
T ss_pred HhhHHH----HhcchHHHHHHHHHHHHhHHHHHc------CCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEE
Confidence 876543 3344444443332 23333333 8999999999999999999999999998772 2456666
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhc----cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCCcchH
Q 043481 183 FGEGVVNDATSIVLFNAIQSFDF----NNIDGTVALNLLGTFLYLYFTSTALGIVLGLLS-AYIIKTLYFLRHSTDREGA 257 (351)
Q Consensus 183 ~ges~~nD~~~iil~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~-~~~~~~~~~~~~~~~~~~~ 257 (351)
.|==+..|...+......-+++. ++....+....+...+.+...-+.++.++|.-. -|+..+.-. ..+++....
T Consensus 151 iGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~-tGsrElf~L 229 (408)
T COG4651 151 IGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAA-TGSRELFTL 229 (408)
T ss_pred EeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHH
Confidence 77778888887766654433321 122222222233333334444556677777643 344444321 222333344
Q ss_pred HHHHHHH-HHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 043481 258 PMMLMAY-LSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDI 330 (351)
Q Consensus 258 l~l~~~~-~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~~ 330 (351)
..+..++ .+|+.+|.+|.|.-+++|++|+++++.+ .+++..+..- .+...+..+||+-+||....+
T Consensus 230 ~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~ese---lshraa~~sl----pLrdaFaVlFFvsVGmlf~P~ 296 (408)
T COG4651 230 AVLAIALGVAFGAAELFGVSFALGAFFAGMVLAESE---LSHRAAEDSL----PLRDAFAVLFFVSVGMLFDPM 296 (408)
T ss_pred HHHHHHHHHhhccceeeccchhHHHHHHHHHhcchh---hhHHHHHhcc----CHHHHHHHHHHHHhhhhcCcH
Confidence 4444444 3456778999999999999999998532 2222222222 234478889999999998654
No 18
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=99.31 E-value=2.7e-11 Score=126.18 Aligned_cols=280 Identities=16% Similarity=0.100 Sum_probs=180.6
Q ss_pred HHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccCh----hHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHH
Q 043481 41 IGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNE----DLFFLYLLPPIIFNAGFQVKKKQFFKNFTTML 116 (351)
Q Consensus 41 ~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~----~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~ 116 (351)
+.+++-|+.++|..+-.++.|+++||..+...+......++.+. +.+..++.-+.+|..|+++|.+.+||+.++..
T Consensus 37 ~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~ 116 (769)
T KOG1650|consen 37 LLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAI 116 (769)
T ss_pred HHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeE
Confidence 34555566779999999999999999876443222111222111 44667778889999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC----HHHHHHhhhhcccccHHHHHHHhccCCC--cchhHhhhhhhhhhh
Q 043481 117 LFGICGTVISFYLISVGAFSIFKKMGMTSLR----IQDFLAIGAILSATDSVCTLQVLSQDET--PFLYSIVFGEGVVND 190 (351)
Q Consensus 117 ~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~----~~~alllGailsaTdp~~v~~il~~~~~--~~l~~ll~ges~~nD 190 (351)
.++..++++++...................+ ...=...+...+.|+-....+++.|.+. ++++++...++.+||
T Consensus 117 ~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~d 196 (769)
T KOG1650|consen 117 VIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLNSELGRLALSAAVVND 196 (769)
T ss_pred EEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhh
Confidence 8888888777543222222221011000111 1134567788899999999999999883 479999999999999
Q ss_pred HHHHHHHHHHHhhhccCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHH
Q 043481 191 ATSIVLFNAIQSFDFNNID-GTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCIL 269 (351)
Q Consensus 191 ~~~iil~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 269 (351)
..++.++.......+.... +. .....+...+...+..=.++-....|+.|+....++..+......+...+.+...
T Consensus 197 v~~~~ll~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~ 273 (769)
T KOG1650|consen 197 VAGWILLALALAFSSELKLSPL---RSVWDLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPVSDAYICVTLLGVLASAFL 273 (769)
T ss_pred HHHHHHHHHHHHHhccCCCcch---HHHHHHHHHHHHHHheeeehhhhHHHHhhcCCCCCccccceehhhHHHHHHHHHH
Confidence 9999988877766554321 11 1122222222222222223334555555553222223344566677778888888
Q ss_pred HHhcC-cchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 043481 270 AELLN-LSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDAL 328 (351)
Q Consensus 270 ae~~g-~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~ 328 (351)
.+.++ .+++.++|+.|+.+-+..+ -.....+++-.....++.++.|...|....
T Consensus 274 ~~~~~~i~~~~Gaf~~Gl~iP~~~p-----~g~~L~ekle~~~~~~llPl~~~~~G~k~d 328 (769)
T KOG1650|consen 274 TDLIGGIHSIFGAFILGLAIPHGPP-----LGSALIEKLEDLVSGLLLPLYFAISGLKTD 328 (769)
T ss_pred HHHhccccccchhheEEEecCCCCc-----hhHHHHHHHHHHHHHHHHHHHHHhhcccee
Confidence 88887 7889999999999986432 111222333334456889999999998864
No 19
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.77 E-value=2.1e-06 Score=83.15 Aligned_cols=207 Identities=15% Similarity=0.126 Sum_probs=124.4
Q ss_pred HHHHhhhHHHhhHhhhcCCHH-------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhc
Q 043481 86 LFFLYLLPPIIFNAGFQVKKK-------QFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAIL 158 (351)
Q Consensus 86 ~~~~i~L~~ilF~~gl~l~~~-------~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGail 158 (351)
.+-+....+--|..|+|++.+ ..||...+ ..-++.|++.++. .|+.+. ..-..+.-=-++-
T Consensus 65 wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPal-----iy~~~n------~~~~~~~~GW~Ip 132 (423)
T PRK14853 65 WAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPAL-----IYVAVN------LAGGGALRGWAIP 132 (423)
T ss_pred HHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHH-----HHHHHh------CCchhhhhhhhhh
Confidence 344455566668899999654 33333333 2336667666653 344442 2112222222567
Q ss_pred ccccHHHHHHHhccCC--Cc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 159 SATDSVCTLQVLSQDE--TP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLG 235 (351)
Q Consensus 159 saTdp~~v~~il~~~~--~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G 235 (351)
++||.+.+..++...| .| +++..+.+-+++||..++++-.++. .++.+.. .... ....
T Consensus 133 ~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~~i~~~---~L~~-------------a~~~ 193 (423)
T PRK14853 133 TATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TSELNLE---ALLL-------------ALVP 193 (423)
T ss_pred hhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CCCCCHH---HHHH-------------HHHH
Confidence 8999999999998865 46 7999999999999999999877665 2222211 1110 0011
Q ss_pred HHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCC-C----hhHHHHHHHHHH-
Q 043481 236 LLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNV-T----ESSRITTKHAFA- 309 (351)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~-~----~~~~~~~~~~~~- 309 (351)
...-+..++ ++.++. ...+.+....++..+..|.++.+|.++.|+.+....+.+. + ++..++.++..+
T Consensus 194 ~~~l~~l~~----~~V~~~--~~Y~ilg~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p 267 (423)
T PRK14853 194 LALFWLLVQ----KRVRKW--WLLLPLGVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRP 267 (423)
T ss_pred HHHHHHHHH----cCCchh--hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHH
Confidence 111223332 233332 2333335577889999999999999999999964222110 0 122344444444
Q ss_pred HHHHHHHHHH-HHHhhhhccc
Q 043481 310 TISFIAETFI-FLYVFMDALD 329 (351)
Q Consensus 310 ~~~~~~~~~~-Fv~vG~~~~~ 329 (351)
.+.+++-|+| |.-.|..+..
T Consensus 268 ~V~~~ILPLFAFANaGV~l~~ 288 (423)
T PRK14853 268 LSAGVAVPVFAFFSAGVAIGG 288 (423)
T ss_pred HHHHHHHHHHHHHHhhheecC
Confidence 4467999999 9999999854
No 20
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=97.98 E-value=0.00027 Score=67.46 Aligned_cols=204 Identities=15% Similarity=0.180 Sum_probs=119.5
Q ss_pred HHHhhhHHHhhHhhhcCCHHHHHHh---hhHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhh-hhcc
Q 043481 87 FFLYLLPPIIFNAGFQVKKKQFFKN---FTTM---LLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIG-AILS 159 (351)
Q Consensus 87 ~~~i~L~~ilF~~gl~l~~~~l~~~---~~~i---~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllG-ails 159 (351)
+-+....+--|..|+|+|.+-+... .|+. ..-+..|++.++. .|..+.. |-+ ...=| ++=+
T Consensus 56 iNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~-----iy~~~n~-~~~------~~~~GW~IP~ 123 (373)
T TIGR00773 56 INDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPAL-----IYLAFNA-NDP------ITREGWAIPA 123 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHhheec-CCC------cccCcccccc
Confidence 3445555666788999987755422 2221 2225555555543 3444421 100 00112 4558
Q ss_pred cccHHHHHHHhccC--CCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 160 ATDSVCTLQVLSQD--ETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGL 236 (351)
Q Consensus 160 aTdp~~v~~il~~~--~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~ 236 (351)
+||.+-...++.-. |.| .+|.-+.+-++.||.-+++.-.++.. ++.+.. ... ..+.+.
T Consensus 124 ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt---~~i~~~---~L~-------------~a~~~~ 184 (373)
T TIGR00773 124 ATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT---NDLSMA---ALL-------------VAAVAI 184 (373)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC---CCCCHH---HHH-------------HHHHHH
Confidence 89999999988654 466 69999999999999999887665542 122211 111 111122
Q ss_pred HHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHH-HHHH
Q 043481 237 LSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATI-SFIA 315 (351)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 315 (351)
..-+..+|. +.++.... .......++..+..|.++.+|.++.|+++.++.+.+ ++..++.++..+.. .++.
T Consensus 185 ~~l~~~~~~----~v~~~~~y--~~lgvllW~~~~~sGVHatiaGvllGl~iP~~~~~~--~~pl~rleh~L~p~v~~li 256 (373)
T TIGR00773 185 AVLAVLNRC----GVRRLGPY--MLVGVILWFAVLKSGVHATLAGVIIGFFIPLKGKKG--ESPLKRLEHVLHPWVAYLI 256 (373)
T ss_pred HHHHHHHHc----CCchhhHH--HHHHHHHHHHHHHcCCcHHHHHHHHeeeecccccCC--CCHHHHHHHHHHHHHHHHH
Confidence 223344432 33332222 223334444448999999999999999998743322 23345666666655 4678
Q ss_pred HHHH-HHHhhhhccc
Q 043481 316 ETFI-FLYVFMDALD 329 (351)
Q Consensus 316 ~~~~-Fv~vG~~~~~ 329 (351)
.|+| |.-.|..+..
T Consensus 257 lPlFAFanAGv~l~~ 271 (373)
T TIGR00773 257 LPLFAFANAGVSLQG 271 (373)
T ss_pred HHHHHHHhcCeeeec
Confidence 8999 9999999844
No 21
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=97.02 E-value=0.26 Score=46.63 Aligned_cols=33 Identities=12% Similarity=0.282 Sum_probs=26.2
Q ss_pred ChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHH
Q 043481 83 NEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTM 115 (351)
Q Consensus 83 ~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i 115 (351)
++|....+.+..+.|..|+++|.+++++..++.
T Consensus 28 ~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~ 60 (313)
T PF13593_consen 28 KPEYVIKYGVALIFFISGLSLPTEELKAALRNW 60 (313)
T ss_pred chhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcc
Confidence 445667778888899999999999998765553
No 22
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=96.60 E-value=0.055 Score=51.94 Aligned_cols=206 Identities=17% Similarity=0.199 Sum_probs=106.0
Q ss_pred HHHHhhhHHHhhHhhhcCCHHHHH----HhhhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhh-hhc
Q 043481 86 LFFLYLLPPIIFNAGFQVKKKQFF----KNFTTM--LLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIG-AIL 158 (351)
Q Consensus 86 ~~~~i~L~~ilF~~gl~l~~~~l~----~~~~~i--~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllG-ail 158 (351)
.+-+....+--|..|+|++.+-.. +.++.. ..-++.|++.++. .|..+.. +-+ . -.=| ++=
T Consensus 58 wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPal-----Iyl~~n~----~~~--~-~~~GW~IP 125 (378)
T PF06965_consen 58 WINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPAL-----IYLAFNA----GGP--E-AAHGWAIP 125 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHH-----HHGGG------SST--T-HHHHTSSS
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHH-----HHheeec----CCC--C-cCceEEec
Confidence 444566666778899999877543 222221 2235555554432 2444421 111 0 1222 567
Q ss_pred ccccHHHHHHHhccC--CCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 159 SATDSVCTLQVLSQD--ETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLG 235 (351)
Q Consensus 159 saTdp~~v~~il~~~--~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G 235 (351)
++||.+-...++.-. +.| .+|..+.+-++.||..++..-.++.+ ++.+ +.... ....+
T Consensus 126 ~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~~i~---~~~L~-------------~a~~~ 186 (378)
T PF06965_consen 126 MATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---DGIS---LLWLL-------------LAAAA 186 (378)
T ss_dssp S---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS-----------HHHHH-------------HHHHH
T ss_pred ccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---CCCC---HHHHH-------------HHHHH
Confidence 899999999998754 466 59999999999999999988776652 1221 11111 11111
Q ss_pred HHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccC--CChhHHHHHHHHHHHHHH
Q 043481 236 LLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHN--VTESSRITTKHAFATISF 313 (351)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 313 (351)
...-+..+|. +.++. ..........++.-..-|.++-+|-++.|+.+..+.+.+ ..++.-++.++..+....
T Consensus 187 ~~~l~~l~r~----~v~~~--~~Y~~~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~ 260 (378)
T PF06965_consen 187 LLLLFVLNRL----GVRSL--WPYLLLGILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVA 260 (378)
T ss_dssp HHHHHHHHHT----T---T--HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC----CCcee--hHHHHHHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhh
Confidence 1222334432 22222 223344456777777889999999999999998765542 112233455555555544
Q ss_pred HHHHHHHH--Hhhhhcc
Q 043481 314 IAETFIFL--YVFMDAL 328 (351)
Q Consensus 314 ~~~~~~Fv--~vG~~~~ 328 (351)
..-.-+|. =.|..+.
T Consensus 261 ~~IlPlFAlaNAGV~l~ 277 (378)
T PF06965_consen 261 FVILPLFALANAGVSLS 277 (378)
T ss_dssp HTHHHHHHHHHS----S
T ss_pred hhhHHhHhheeCceEEe
Confidence 33333444 4455543
No 23
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.27 E-value=1 Score=42.36 Aligned_cols=112 Identities=19% Similarity=0.191 Sum_probs=68.8
Q ss_pred CccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHH
Q 043481 49 RWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFY 128 (351)
Q Consensus 49 ~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~ 128 (351)
..+++....++.|++++......++ ...+-.++..+.+.+++ +-.-|.+++.+++.+..++.+......+..+..
T Consensus 24 ~~l~~~~~AillG~~i~n~~~~~~~-~~~~Gi~~~~k~~Lr~g----IVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~ 98 (305)
T PF03601_consen 24 PGLGALLIAILLGMLIGNLFFGLPA-RFKPGIKFSSKKLLRLG----IVLLGFRLSFSDILALGWKGLLIIIIVVILTFL 98 (305)
T ss_pred cCccHHHHHHHHHHHHhhhccCCcH-HHHhHHHHHHHHHHHHH----HHHHCccccHHHHHHhCccHHHHHHHHHHHHHH
Confidence 4578888889999999861111111 11111222233344444 456699999999999999877777666655554
Q ss_pred HHHHHHHHHH-hhcCCCCCCHHHHHHhh---hhcccccHHHHHHHhcc
Q 043481 129 LISVGAFSIF-KKMGMTSLRIQDFLAIG---AILSATDSVCTLQVLSQ 172 (351)
Q Consensus 129 ~~~~~~~~~~-~~~g~~~~~~~~alllG---ailsaTdp~~v~~il~~ 172 (351)
.. +++. +.+ +.|...+.++| ++..++..+++.++.|.
T Consensus 99 ~~----~~lg~r~~---~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a 139 (305)
T PF03601_consen 99 LT----YWLGRRLF---GLDRKLAILIAAGTSICGASAIAATAPVIKA 139 (305)
T ss_pred HH----HHHHHHHh---CCCHHHHHHHHhhcccchHHHHHHHcccccC
Confidence 33 3333 333 66888888888 45555555666666654
No 24
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=96.06 E-value=0.28 Score=47.29 Aligned_cols=203 Identities=15% Similarity=0.176 Sum_probs=114.5
Q ss_pred HHHHhhhHHHhhHhhhcCCHHHHHHhh---hH---HHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCCCHHHHHHhhh
Q 043481 86 LFFLYLLPPIIFNAGFQVKKKQFFKNF---TT---MLLFGICGTVISFYLISVGAFSIFKKMG---MTSLRIQDFLAIGA 156 (351)
Q Consensus 86 ~~~~i~L~~ilF~~gl~l~~~~l~~~~---~~---i~~la~~g~~~~~~~~~~~~~~~~~~~g---~~~~~~~~alllGa 156 (351)
.+-+....+--|..|+|++.+-..... |+ ...-|+.|++.++. .|+.+..-+ ..|| +
T Consensus 62 wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAl-----Iy~~~n~g~~~~~~GW---------g 127 (389)
T PRK09560 62 WINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPAL-----IYAAFNYNNPETLRGW---------A 127 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHheeecCCCcccCcc---------c
Confidence 344455666678889999877554222 22 12225555555543 244432100 0123 3
Q ss_pred hcccccHHHHHHHhccC--CCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 043481 157 ILSATDSVCTLQVLSQD--ETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIV 233 (351)
Q Consensus 157 ilsaTdp~~v~~il~~~--~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~ 233 (351)
+=++||.+-...++.-. +.| .++.-+.+-++.||..+++.-.++.. ++.+. .... ..+
T Consensus 128 IPmATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt---~~i~~---~~L~-------------~a~ 188 (389)
T PRK09560 128 IPAATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT---SDLSL---PALA-------------LAA 188 (389)
T ss_pred cccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CCCCH---HHHH-------------HHH
Confidence 55789999999998754 466 68999999999999999887665542 12221 1111 111
Q ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHH
Q 043481 234 LGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISF 313 (351)
Q Consensus 234 ~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (351)
.+...-+..+|. +.+. ...........++.-..-|.++-+|.++.|+++..+.+.+..++.-++.+|..+....
T Consensus 189 ~~~~~l~~ln~~----~v~~--~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~ 262 (389)
T PRK09560 189 IAIAVLFLLNRL----GVTK--LTPYLIVGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVA 262 (389)
T ss_pred HHHHHHHHHHHc----CCcc--chHHHHHHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhh
Confidence 112222334432 2222 2333445567778888899999999999999998643322111223455565665554
Q ss_pred HHHHHHHHHh--hhhc
Q 043481 314 IAETFIFLYV--FMDA 327 (351)
Q Consensus 314 ~~~~~~Fv~v--G~~~ 327 (351)
..-.-+|.+. |..+
T Consensus 263 ~~IlPlFAlaNAGV~l 278 (389)
T PRK09560 263 FAILPLFAFANAGVSL 278 (389)
T ss_pred hhhHHHHHhhcCCeee
Confidence 4444445443 4444
No 25
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=95.66 E-value=0.32 Score=46.89 Aligned_cols=202 Identities=14% Similarity=0.168 Sum_probs=112.1
Q ss_pred HHHhhhHHHhhHhhhcCCHHHHHHh---hhH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhh-hhcc
Q 043481 87 FFLYLLPPIIFNAGFQVKKKQFFKN---FTT---MLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIG-AILS 159 (351)
Q Consensus 87 ~~~i~L~~ilF~~gl~l~~~~l~~~---~~~---i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllG-ails 159 (351)
+-+....+--|..|+|++.+-.... +|+ ...-|..|++.++. .|+.+.. |-+ ...=| ++=+
T Consensus 63 iNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAl-----iy~~~n~-~~~------~~~~GWaIP~ 130 (388)
T PRK09561 63 INDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPAL-----IYLLFNY-ADP------VTREGWAIPA 130 (388)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHH-----HHhheec-CCC------cccCcccccc
Confidence 4445556666888999987765422 222 12235555555543 3444421 100 00112 4558
Q ss_pred cccHHHHHHHhccC--CCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 160 ATDSVCTLQVLSQD--ETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGL 236 (351)
Q Consensus 160 aTdp~~v~~il~~~--~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~ 236 (351)
+||.+-+..++.-. |.| .++.-+.+-++.||..+++.-.++.. ++.++. ... . .....
T Consensus 131 ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~~---~L~-------~------a~~~~ 191 (388)
T PRK09561 131 ATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT---SDLSMV---SLG-------V------AAVAI 191 (388)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CCccHH---HHH-------H------HHHHH
Confidence 89999999998644 466 68999999999999999987665542 222211 110 1 11111
Q ss_pred HHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHH
Q 043481 237 LSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAE 316 (351)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (351)
..-+..+|. +.+. ...........++.-..-|.++-+|-++.|+.+..+.+++ ++.-++.+|..+......-
T Consensus 192 ~~l~~ln~~----~v~~--~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~--~~pl~rleh~L~p~v~~~I 263 (388)
T PRK09561 192 AVLAVLNLC----GVRR--TSVYILVGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHG--RSPAERLEHGLHPWVAFLI 263 (388)
T ss_pred HHHHHHHHc----CCcc--chHHHHHHHHHHHHHHHccccHHHHHHHHHhhccccCCCC--CCHHHHHHHHhhhhhhhee
Confidence 222333432 2222 2333445567788888899999999999999998643322 1223445555554444433
Q ss_pred HHHHHHh--hhhc
Q 043481 317 TFIFLYV--FMDA 327 (351)
Q Consensus 317 ~~~Fv~v--G~~~ 327 (351)
.-+|.+. |..+
T Consensus 264 lPlFAfaNAGV~l 276 (388)
T PRK09561 264 LPLFAFANAGVSL 276 (388)
T ss_pred HHHHHhhcCCeee
Confidence 3444443 5444
No 26
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=95.58 E-value=0.49 Score=46.20 Aligned_cols=167 Identities=16% Similarity=0.186 Sum_probs=98.1
Q ss_pred HHHhhhHHHhhHhhhcCCHHHHHHhh---hHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhh-hhcc
Q 043481 87 FFLYLLPPIIFNAGFQVKKKQFFKNF---TTM---LLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIG-AILS 159 (351)
Q Consensus 87 ~~~i~L~~ilF~~gl~l~~~~l~~~~---~~i---~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllG-ails 159 (351)
+-+....+--|..|+|++.+-+.-.. |+. ..-|+.|++.+++ .|+.+.. |- + . .=| ++=+
T Consensus 67 INDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAl-----Iy~~~n~-~~---~--~--~~GWgIPm 133 (423)
T PRK14855 67 VNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAA-----LYTALNA-GG---P--G--ASGWGVPM 133 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHH-----HHheeec-CC---C--c--cCcccccc
Confidence 44455566667889999877654222 221 2225555555543 3444421 10 1 0 122 4668
Q ss_pred cccHHHHHHHhccC--CCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 160 ATDSVCTLQVLSQD--ETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGL 236 (351)
Q Consensus 160 aTdp~~v~~il~~~--~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~ 236 (351)
+||.+-+..++.-. +.| .++.-+.+-++.||..+++.-.++.. ++.+ +.... ..+.+.
T Consensus 134 ATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~---~~~L~-------------~a~~~~ 194 (423)
T PRK14855 134 ATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT---SGLN---LLALL-------------LAALTW 194 (423)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC---CCCC---HHHHH-------------HHHHHH
Confidence 99999999998754 467 69999999999999999876555442 1222 11111 111111
Q ss_pred HHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhc
Q 043481 237 LSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHY 291 (351)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~ 291 (351)
..-+..+|. +.+.. ...+......++.-..-|.++-+|-++.|+++..+
T Consensus 195 ~~l~~ln~~----~v~~~--~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~ 243 (423)
T PRK14855 195 ALALLAGRL----GVTSL--KIYAVLGALLWFFVLKSGLHPTVAGVLLALAVPIR 243 (423)
T ss_pred HHHHHHHHc----CCccc--cHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccc
Confidence 222333432 22222 33334556778888889999999999999999753
No 27
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=95.48 E-value=0.57 Score=45.05 Aligned_cols=203 Identities=13% Similarity=0.143 Sum_probs=110.7
Q ss_pred HHHHhhhHHHhhHhhhcCCHHHHHHh---hhH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhh-hhc
Q 043481 86 LFFLYLLPPIIFNAGFQVKKKQFFKN---FTT---MLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIG-AIL 158 (351)
Q Consensus 86 ~~~~i~L~~ilF~~gl~l~~~~l~~~---~~~---i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllG-ail 158 (351)
.+-+....+--|..|+|+|.+-.... +|+ ...-|+.|++.++. .|..+. .+ ....=| ++=
T Consensus 59 WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAl-----Iy~~~n------~~--~~~~~GW~IP 125 (383)
T PRK14854 59 WINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSL-----IYLSIN------HD--IKVINGWAIP 125 (383)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHHhhc------cC--CcccCccccc
Confidence 34445555566788999887654322 222 12235556555543 344442 11 111122 456
Q ss_pred ccccHHHHHHHhccC--CCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 159 SATDSVCTLQVLSQD--ETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLG 235 (351)
Q Consensus 159 saTdp~~v~~il~~~--~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G 235 (351)
++||.+-...++.-. +.| .++..+.+-++.||..+++.-.++.. ++.+. .... .... .
T Consensus 126 ~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~---~~L~-------~A~~------~ 186 (383)
T PRK14854 126 SATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFYT---KSLSL---LSLS-------LGTL------F 186 (383)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CCccH---HHHH-------HHHH------H
Confidence 889999999988754 466 68999999999999999887655542 22221 1110 0000 1
Q ss_pred HHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHH
Q 043481 236 LLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIA 315 (351)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (351)
...-+..+|. ++.+.. ...+......++.-..-|.++-+|-++.|+.+..+.++. ++..++.++..+.....+
T Consensus 187 ~~~l~~~nr~---~~v~~~--~~Y~~~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~--~~pl~rleh~L~p~v~~~ 259 (383)
T PRK14854 187 ILAMIICNRI---FKINRS--SVYVVLGFFAWFCTIKSGVHATLAGFTTALCIPFRENDK--DSPANFMEDSLHPWIIYF 259 (383)
T ss_pred HHHHHHHHHh---cCCcee--hHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCC--CCHHHHHHHHhhchHHHh
Confidence 1111223322 133332 223445567788888899999999999999998643322 122244444444443334
Q ss_pred HHHHHHH--hhhhc
Q 043481 316 ETFIFLY--VFMDA 327 (351)
Q Consensus 316 ~~~~Fv~--vG~~~ 327 (351)
-.-+|.+ .|..+
T Consensus 260 IlPlFA~aNAGV~l 273 (383)
T PRK14854 260 ILPVFAFANAGISF 273 (383)
T ss_pred hHHHHHhhcCCeee
Confidence 4444444 35444
No 28
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=95.29 E-value=2.7 Score=39.68 Aligned_cols=152 Identities=15% Similarity=0.106 Sum_probs=85.6
Q ss_pred HHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHH
Q 043481 87 FFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCT 166 (351)
Q Consensus 87 ~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v 166 (351)
....++..++|.-|++++.+++++..+.-... ..+...++.+.-..++.+... .+.+.-+..|-++-++-|..+
T Consensus 39 ~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~v-ligl~~qfvlmPlla~~~~~~-----~~l~~~l~~Gl~ll~~~Pggv 112 (319)
T COG0385 39 AIPIALALIMFGMGLTLSREDFLAGLKHPRLV-LIGLAAQFVLMPLLALLLAKL-----FPLPPELAVGLLLLGCCPGGV 112 (319)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHhHHheeeCCCch
Confidence 45788999999999999999998776554432 224555665555555544322 235566777877777777666
Q ss_pred HHHhccCCCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 167 LQVLSQDETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTL 245 (351)
Q Consensus 167 ~~il~~~~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~ 245 (351)
.+..-..-.+ ++.- -.++...+..++....=....+..++....+.++...+.+.+.+.-+.+|.++-.......++.
T Consensus 113 ~S~~~t~lAkGnVal-sV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~~~ 191 (319)
T COG0385 113 ASNAMTYLAKGNVAL-SVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWVERL 191 (319)
T ss_pred hHHHHHHHhcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6633211111 1111 1123445555665544333333222222223445566666666666666666665555444443
No 29
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=95.27 E-value=3.1 Score=40.30 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=41.1
Q ss_pred HHHHHHHHhh------cCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHh
Q 043481 38 CIIIGHLIEE------NRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKN 111 (351)
Q Consensus 38 ~~~~~~~l~~------~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~ 111 (351)
..++|+++|+ |..+|+++.-=+.+.++.+........ ..++|.+ +.+..+....-..|+.-+.+.+||-
T Consensus 15 lLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~~~~~----~~~f~~~-l~~~lm~~fF~~igL~~~~~~lkkg 89 (368)
T PF03616_consen 15 LLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLILGGFGGI----SISFDTS-LQDFLMIIFFTTIGLGASLKLLKKG 89 (368)
T ss_pred HHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHHHHhcCce----EEEechh-HHHHHHHHHHHHHhhccchhhHHhh
Confidence 3344555653 345899864444444444443322111 1334433 3333222222235888899999998
Q ss_pred hhHHHHHHHH
Q 043481 112 FTTMLLFGIC 121 (351)
Q Consensus 112 ~~~i~~la~~ 121 (351)
++++......
T Consensus 90 g~~~~~~~~~ 99 (368)
T PF03616_consen 90 GKAVLIFLLI 99 (368)
T ss_pred HHHHHHHHHH
Confidence 8877664443
No 30
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.18 E-value=0.4 Score=45.26 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhh-cCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhH
Q 043481 36 CACIIIGHLIEE-NRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTT 114 (351)
Q Consensus 36 ~~~~~~~~~l~~-~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~ 114 (351)
+.+..+++.... ...+|+.+..++.|+++|.... .+++...-.++..+.+.++++ -.-|++++++++.+...+
T Consensus 21 ~~a~~l~~~~~~~~~~l~al~lAIllGi~l~~l~~--~~~~~~~GI~fs~k~LLr~gI----vLlG~~ltl~~i~~~G~~ 94 (334)
T COG2855 21 GLAMLLGAFFFSIHLGLSALTLAILLGILLGILPQ--IPAQTSAGITFSSKKLLRLGI----VLLGFRLTLSDIADVGGS 94 (334)
T ss_pred HHHHHHhchHHhhhcCchHHHHHHHHHHHHhcccc--chhhhccchhhhHHHHHHHHH----HHHcceeeHHHHHHcCcc
Confidence 334444444432 3348899999999999994322 122222335556666666665 445899999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhh---hhcccccHHHHHHHhc
Q 043481 115 MLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIG---AILSATDSVCTLQVLS 171 (351)
Q Consensus 115 i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllG---ailsaTdp~~v~~il~ 171 (351)
.+......+..+....-++.. .+ +.|+..+++.| ++..+...+++.++.|
T Consensus 95 ~v~~~~~~l~~t~~~~~~lg~-~l------gld~~~a~Lia~GssICGasAiaA~~pvik 147 (334)
T COG2855 95 GVLIIAITLSSTFLFAYFLGK-LL------GLDKKLALLIAAGSSICGASAIAATAPVIK 147 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-Hh------CCCHHHHHHHHccchhhHHHHHHHhCCcCC
Confidence 777555443333322222223 23 78999999998 4555555566656665
No 31
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=95.04 E-value=0.53 Score=40.92 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=63.6
Q ss_pred hhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHH
Q 043481 90 YLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQV 169 (351)
Q Consensus 90 i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~i 169 (351)
+.+..++|..|+++|.+++|+..|+.-. -..+.+......-..++.+... -++.......|.++.+..|....+-
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~-l~~~l~~~~~i~Plla~~l~~~----~~~~~~~~~~Gl~l~~~~P~~~~s~ 76 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKL-LLIGLLAQFLIMPLLAFGLAWL----LLPLSPALALGLLLVAACPGGPASN 76 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHH-HHHHHHHHHHHHHHHHHHHH-H----HTT--HHHHHHHHHHHHS-B-THHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHHH----HhcCCHHHHHHHHHHhcCCcHHHHH
Confidence 3467789999999999999977665333 2223444555554444443211 1244445666655555555433332
Q ss_pred hc-c--CCCcchhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 170 LS-Q--DETPFLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIK 243 (351)
Q Consensus 170 l~-~--~~~~~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~ 243 (351)
.. + .|...+. .+-..+|...+....=....+..+.....+ .....+...+....+++=.+.|...++..+
T Consensus 77 ~~t~l~~Gd~~ls---~~lt~istll~~~~~P~~~~l~~~~~~~~~-~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p 149 (187)
T PF01758_consen 77 VFTYLAGGDVALS---VSLTLISTLLAPFLMPLLLYLLSGGSVDVD-SISPWDIIKSLLLIVILPLLLGMLLRKYLP 149 (187)
T ss_dssp HHHHHTT--HHHH---HHHHHHHHHHHHHHHHHHHHHHH-GGGHHH----HHHHHHHHHHHTHHHHHHHHHHHHHHG
T ss_pred HHHHHhCCCcccc---cceeeHHHHHHHHHHHHHHHHHhccccCCc-hhhHHHHHHHHHheehHHHhHHHHHHHHhh
Confidence 22 2 2222222 223455555555544333333222211222 111223333344444445555555555444
No 32
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=94.82 E-value=0.89 Score=44.64 Aligned_cols=168 Identities=16% Similarity=0.216 Sum_probs=98.6
Q ss_pred HHHHhhhHHHhhHhhhcCCHHHHHHhh---hH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhh-hhc
Q 043481 86 LFFLYLLPPIIFNAGFQVKKKQFFKNF---TT---MLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIG-AIL 158 (351)
Q Consensus 86 ~~~~i~L~~ilF~~gl~l~~~~l~~~~---~~---i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllG-ail 158 (351)
.+-+....+--|..|+|++.+-..-.. |+ ...-|+.|++.++. .|+.+.. +- + . .=| ++=
T Consensus 71 wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAl-----IY~~~n~-~~---~---~-~~GWgIP 137 (438)
T PRK14856 71 WIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGL-----IYFFLNA-DT---P---S-QHGFGIP 137 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHH-----HHhheec-CC---C---c-cCccccc
Confidence 344455666668889999877553221 11 12225555555542 3444421 10 0 0 112 456
Q ss_pred ccccHHHHHHHhccC--CCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 159 SATDSVCTLQVLSQD--ETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLG 235 (351)
Q Consensus 159 saTdp~~v~~il~~~--~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G 235 (351)
++||.+-+..++.-. +.| .++.-+.+-++.||.-++++-.++.. ++.+. .... ..+.+
T Consensus 138 mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~---~~L~-------------~a~~~ 198 (438)
T PRK14856 138 MATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT---TNLKF---AWLL-------------GALGV 198 (438)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CCCcH---HHHH-------------HHHHH
Confidence 899999999988644 467 69999999999999999987665542 12221 1111 11111
Q ss_pred HHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhc
Q 043481 236 LLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHY 291 (351)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~ 291 (351)
...-+..+|. +.+.. ...+......++.-..-|.++-+|.++.|+.+..+
T Consensus 199 ~~~l~~ln~~----~v~~~--~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~ 248 (438)
T PRK14856 199 VLVLAVLNRL----NVRSL--IPYLLLGVLLWFCVHQSGIHATIAAVVLAFMIPVK 248 (438)
T ss_pred HHHHHHHHHc----CCccc--cHHHHHHHHHHHHHHHccCcHHHHHHHHHheeecc
Confidence 2223344433 22222 23333556777888889999999999999999753
No 33
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.76 E-value=1.2 Score=46.16 Aligned_cols=101 Identities=12% Similarity=0.118 Sum_probs=62.0
Q ss_pred HHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHH
Q 043481 87 FFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCT 166 (351)
Q Consensus 87 ~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v 166 (351)
+..+++|+.-...|+++|++.+.++++.++.+.....+.-.......+.+ + ++++.+++.+|..+++......
T Consensus 266 f~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~~-~------g~~~~~al~~g~~L~~~Gef~~ 338 (601)
T PRK03659 266 FKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARL-Y------GLRSSERMQFAGVLSQGGEFAF 338 (601)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-h------CCCHHHHHHHHHHHhccccHHH
Confidence 66788888888889999999998887766554444444444333333322 2 7899999999999988776443
Q ss_pred H--HHhccCC-Cc-chhHhhhhhhhhhhHHHH
Q 043481 167 L--QVLSQDE-TP-FLYSIVFGEGVVNDATSI 194 (351)
Q Consensus 167 ~--~il~~~~-~~-~l~~ll~ges~~nD~~~i 194 (351)
+ +.-.+.+ .+ +..+.+.....+.-.++-
T Consensus 339 vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP 370 (601)
T PRK03659 339 VLFSAASSQRLLQGDQMALLLVVVTLSMMTTP 370 (601)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2 2223344 23 454444444444433333
No 34
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=94.69 E-value=4.6 Score=39.30 Aligned_cols=86 Identities=20% Similarity=0.282 Sum_probs=58.1
Q ss_pred CccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHH
Q 043481 49 RWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFY 128 (351)
Q Consensus 49 ~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~ 128 (351)
+++|.++...+.|+++...... +++..++.. +.+.+..+|.-++.-=++.|.|+++|..++.+. ++....++.+
T Consensus 23 ~~l~~~vl~~~~~~~lsnlgli-~~p~~s~~y----~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~-~F~~~~~g~v 96 (378)
T PF05684_consen 23 KYLPGAVLCYLLGMLLSNLGLI-DSPASSPVY----DFVWTYLVPLAIPLLLLSADLRRILRLGGRLLL-AFLIGAVGTV 96 (378)
T ss_pred hhcCHHHHHHHHHHHHHHCCCc-CCCCcchHH----HHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHH-HHHHHHHHHH
Confidence 4689999999999999875432 222222222 457778888888888889999999999888665 3333344445
Q ss_pred HHHHHHHHHHhh
Q 043481 129 LISVGAFSIFKK 140 (351)
Q Consensus 129 ~~~~~~~~~~~~ 140 (351)
+.+.+.+++++.
T Consensus 97 iG~~va~~l~~~ 108 (378)
T PF05684_consen 97 IGAVVAFLLFGG 108 (378)
T ss_pred HHHHHHHHHHhh
Confidence 555566666653
No 35
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=94.62 E-value=4.6 Score=39.03 Aligned_cols=79 Identities=14% Similarity=0.088 Sum_probs=44.2
Q ss_pred HHHHHHHHhhc------CccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhH-hhhcCCHHHHHH
Q 043481 38 CIIIGHLIEEN------RWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFN-AGFQVKKKQFFK 110 (351)
Q Consensus 38 ~~~~~~~l~~~------~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~-~gl~l~~~~l~~ 110 (351)
..++|+.++|| ..+|+++.-=+...++++..+.....+ .++|. .+-+. +..+.|. .|+.-|.+.+||
T Consensus 17 llllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~----~~fd~-~l~~~-fmliFFttiglsa~~~~lkk 90 (404)
T COG0786 17 LLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVS----LNFDT-SLQDV-FMLIFFATIGLSASFKLLKK 90 (404)
T ss_pred HHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEE----EeCCc-ccccH-HHHHHHHHhccccchhHHHh
Confidence 34456666542 348999766555566666554322111 12221 01112 2223344 599999999999
Q ss_pred hhhHHHHHHHHH
Q 043481 111 NFTTMLLFGICG 122 (351)
Q Consensus 111 ~~~~i~~la~~g 122 (351)
-+++........
T Consensus 91 gGk~l~if~~~a 102 (404)
T COG0786 91 GGKKLAIFLATA 102 (404)
T ss_pred cChhHHHHHHHH
Confidence 999877754443
No 36
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.50 E-value=1.3 Score=45.97 Aligned_cols=92 Identities=10% Similarity=0.049 Sum_probs=57.6
Q ss_pred HHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHH-
Q 043481 87 FFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVC- 165 (351)
Q Consensus 87 ~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~- 165 (351)
+..+++|+.-...|+++|++.+.++++.++.+....++.-.+.....+.+ + ++++.+++.+|..+++-....
T Consensus 269 f~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~-~------g~~~~~a~~~gl~L~~~Gef~~ 341 (621)
T PRK03562 269 FKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARP-L------GVPRKQRRWFAVLLGQGGEFAF 341 (621)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h------CCCHhHHHHHHHHHhccccHHH
Confidence 56677877777789999999998887766554444444444333333332 2 789999999999998765532
Q ss_pred -HHHHhccCC-Cc-chhHhhhhh
Q 043481 166 -TLQVLSQDE-TP-FLYSIVFGE 185 (351)
Q Consensus 166 -v~~il~~~~-~~-~l~~ll~ge 185 (351)
+..+-.+.+ .+ +..+.+...
T Consensus 342 vl~~~a~~~~~i~~~~~~~lv~~ 364 (621)
T PRK03562 342 VVFGAAQMANVLEPEWAKLLTLA 364 (621)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHH
Confidence 223334444 23 454444433
No 37
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=93.78 E-value=0.36 Score=42.26 Aligned_cols=88 Identities=20% Similarity=0.255 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCC-----HHHHHHhhhHHHHHHHHHHHHHHHHH
Q 043481 56 TALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVK-----KKQFFKNFTTMLLFGICGTVISFYLI 130 (351)
Q Consensus 56 ~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~-----~~~l~~~~~~i~~la~~g~~~~~~~~ 130 (351)
..++.|+++|.....- .+. ++...+..|-.++|..|.++. ++++|+..++.+.+.+.. ++..+..
T Consensus 3 ~~li~Gi~lG~~~~~~--------~~~-~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~t-IlGSllg 72 (191)
T PF03956_consen 3 IALILGILLGYFLRPP--------FSL-IDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLAT-ILGSLLG 72 (191)
T ss_pred eeHHHHHHHHHHhccc--------ccc-cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHH-HHHHHHH
Confidence 4567888888764321 111 134788889999999999874 345666667877766654 4555566
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHhhhhcc
Q 043481 131 SVGAFSIFKKMGMTSLRIQDFLAIGAILS 159 (351)
Q Consensus 131 ~~~~~~~~~~~g~~~~~~~~alllGails 159 (351)
+.....++ ++|+.+++.+|+=..
T Consensus 73 g~l~~~ll------~~~~~~~lav~sG~G 95 (191)
T PF03956_consen 73 GLLASLLL------GLSLKESLAVASGFG 95 (191)
T ss_pred HHHHHHHh------cCCHHHHHHHHccCc
Confidence 66666665 789999998886553
No 38
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=93.74 E-value=2.3 Score=37.23 Aligned_cols=94 Identities=19% Similarity=0.195 Sum_probs=60.3
Q ss_pred HHHHHHHHhh---cCccchHHHHHHHHHHHHHHHHhhccCCCcccccc---------ChhHHHHhhhHHHhhHhhhcCCH
Q 043481 38 CIIIGHLIEE---NRWANESITALLLGLCAGGVVLLASKDRSSHLLVF---------NEDLFFLYLLPPIIFNAGFQVKK 105 (351)
Q Consensus 38 ~~~~~~~l~~---~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~---------~~~~~~~i~L~~ilF~~gl~l~~ 105 (351)
....++++.| +.|+|.+...++.|+++..........+- .+.++ ....+++++ +...+++.|.
T Consensus 24 ~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~gG~~TgG~k-GlaDi~lfsGiglmGGaMlRDfA----IvaTAf~v~~ 98 (254)
T TIGR00808 24 MMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVGGVYTGGEK-GLADIAIFGGFGLMGGAMLRDLA----IVATAFEVDV 98 (254)
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHcccccCCcc-ccchhhhhcchhhhhhHHHHHHH----HHHHhhcCcH
Confidence 3334555543 35799999999999999987543222111 11111 112233333 3677999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 106 KQFFKNFTTMLLFGICGTVISFYLISVGAFS 136 (351)
Q Consensus 106 ~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~ 136 (351)
++.||....-..-.+.|+++++...+.+++.
T Consensus 99 ~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~a 129 (254)
T TIGR00808 99 KEVKKAGKVGMVALLLGCVIPFVIGAMVAWA 129 (254)
T ss_pred HHHHHcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887777778888887665555543
No 39
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=93.67 E-value=1.4 Score=37.78 Aligned_cols=111 Identities=15% Similarity=0.126 Sum_probs=69.5
Q ss_pred CccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHH---HHHHhhhHHHHHHHHHHHH
Q 043481 49 RWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKK---QFFKNFTTMLLFGICGTVI 125 (351)
Q Consensus 49 ~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~---~l~~~~~~i~~la~~g~~~ 125 (351)
.++-...+.++.|+++|......+...+ .. -++.+.++.+.+-++..|++--.+ .+||+..+...+++.-+.+
T Consensus 21 ~~LG~a~G~L~vgL~~G~~~~~~~~~~~---~~-~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~ 96 (169)
T PF06826_consen 21 FSLGAAGGVLFVGLILGALGRTGPIFLP---IS-APSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLV 96 (169)
T ss_pred eeccccHHHHHHHHHHHHhhhccCCCCC---cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456667889999999986532111111 11 235688899999999999987754 5667777777777777777
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhccc-ccHHHHHHHhc
Q 043481 126 SFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSA-TDSVCTLQVLS 171 (351)
Q Consensus 126 ~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsa-Tdp~~v~~il~ 171 (351)
+..+.....++++ ++|. ....|.+-.+ |+|.......+
T Consensus 97 ~~~~~~~~~~~~~------~l~~--~~~~G~~aGa~T~tp~L~~A~~ 135 (169)
T PF06826_consen 97 PLLIALVIGRYLF------KLNP--GIAAGILAGALTSTPALAAAQE 135 (169)
T ss_pred HHHHHHHHHHHHc------CCCH--HHHHHHHHccccCcHHHHHHHH
Confidence 7665555555554 4553 3555655533 55555444433
No 40
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.03 E-value=4.4 Score=41.53 Aligned_cols=105 Identities=11% Similarity=0.006 Sum_probs=59.3
Q ss_pred HHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHH
Q 043481 87 FFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCT 166 (351)
Q Consensus 87 ~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v 166 (351)
+..+++|+.-...|+++|++.+.+++..+..+.....+.-......... .+ +.++.+++..|..+++......
T Consensus 277 ~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~~~-~~------g~~~~~a~~~gl~l~~~Gef~l 349 (558)
T PRK10669 277 LRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFLVR-LF------GHSRRTALTIAASLAQIGEFAF 349 (558)
T ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCChhhHHHHHHHHhcccchHH
Confidence 4567777777778999999999877654433322222222222222222 22 7799999999999987666333
Q ss_pred H--HHhccCC-Cc-chhHhhhhhhhhhhHHHHHHHH
Q 043481 167 L--QVLSQDE-TP-FLYSIVFGEGVVNDATSIVLFN 198 (351)
Q Consensus 167 ~--~il~~~~-~~-~l~~ll~ges~~nD~~~iil~~ 198 (351)
. .+-.+.+ .+ +....+...+.+.-.++=.++.
T Consensus 350 ii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~ 385 (558)
T PRK10669 350 ILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFT 385 (558)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2223444 23 4554554444444444444433
No 41
>COG2431 Predicted membrane protein [Function unknown]
Probab=92.69 E-value=1 Score=41.22 Aligned_cols=90 Identities=20% Similarity=0.121 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCC---HHHHHHh-hhHHHHHHHHHHHHHHH
Q 043481 53 ESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVK---KKQFFKN-FTTMLLFGICGTVISFY 128 (351)
Q Consensus 53 ~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~---~~~l~~~-~~~i~~la~~g~~~~~~ 128 (351)
..++..+.|+++|....... + +++.-.+..|-.++|..|.++. ....++. -|+.+.+++. ++++..
T Consensus 108 k~~~~vl~g~~~G~l~~~~~--------~-~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i-~ilssl 177 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSFL--------N-FPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFI-TLLSSL 177 (297)
T ss_pred HHHHHHHHHHHHHHHhcccc--------c-CchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHH-HHHHHH
Confidence 45667788888887654221 1 2345678888999999999887 2222221 1344454554 566777
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHhhhhc
Q 043481 129 LISVGAFSIFKKMGMTSLRIQDFLAIGAIL 158 (351)
Q Consensus 129 ~~~~~~~~~~~~~g~~~~~~~~alllGail 158 (351)
..|....+++ ++|+.+++.+++=.
T Consensus 178 iGG~iaa~~l------~lpl~~~lAmasG~ 201 (297)
T COG2431 178 IGGLIAAFLL------DLPLTTGLAMASGF 201 (297)
T ss_pred HHHHHHHHHH------hccHHHHHHHHhcc
Confidence 7777777776 78988888776544
No 42
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=92.44 E-value=2.1 Score=46.02 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=42.7
Q ss_pred HHHhhhHHHhhHhhhcCCHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHH
Q 043481 87 FFLYLLPPIIFNAGFQVKKKQFFKNF--TTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSV 164 (351)
Q Consensus 87 ~~~i~L~~ilF~~gl~l~~~~l~~~~--~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~ 164 (351)
...+++|+.....|+++|.+.+.... .....+.+...+.-.......+. .+ ++|+.+++.+|.++++-.-.
T Consensus 323 ~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~-~~------g~~~~eal~lG~lm~~kG~~ 395 (832)
T PLN03159 323 VSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAF-FY------TMPFREGITLGFLMNTKGLV 395 (832)
T ss_pred HHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHHHHHHHHHHHhcccHH
Confidence 35677888888899999998885432 11122222222222222222222 22 78999999999999886643
Q ss_pred H
Q 043481 165 C 165 (351)
Q Consensus 165 ~ 165 (351)
.
T Consensus 396 ~ 396 (832)
T PLN03159 396 E 396 (832)
T ss_pred H
Confidence 3
No 43
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=91.37 E-value=12 Score=34.78 Aligned_cols=69 Identities=19% Similarity=0.322 Sum_probs=38.8
Q ss_pred hHHHhhHhhhcCCHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHH
Q 043481 92 LPPIIFNAGFQVKKKQFFKNFTT--MLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQ 168 (351)
Q Consensus 92 L~~ilF~~gl~l~~~~l~~~~~~--i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~ 168 (351)
+..++|..|.+++.+++++..++ ....++ +......-..++.+...++ . ......|.++.+.-|..+.+
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~---~~~~vi~Plla~~l~~~~~---l--~~~~~~glvL~~~~P~~~~s 84 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGL---LAQYGIMPLTGFLLAKVFK---L--PPELAVGVLIVGCCPGGTAS 84 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHH---HHHHHHHHHHHHHHHHHhC---C--CHHHHHHHHheeeCCCchHH
Confidence 78889999999999999887663 222222 2233333333333322222 2 24456666665555544444
No 44
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=91.06 E-value=3.1 Score=40.78 Aligned_cols=99 Identities=17% Similarity=0.168 Sum_probs=56.7
Q ss_pred CccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHH-hhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHH
Q 043481 49 RWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFL-YLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISF 127 (351)
Q Consensus 49 ~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~-i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~ 127 (351)
.+++..++..++|+++.-.-. ..+..+-+-+.+.+ +++|+--...|+++|++.+.+++..+..+....+..-.
T Consensus 241 ~gls~ilGAFlaGl~ls~~~~------~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~ 314 (397)
T COG0475 241 LGLSMILGAFLAGLLLSESEY------RKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGKI 314 (397)
T ss_pred hChhHHHHHHHHHHHhccccc------chHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHH
Confidence 345666666666665543211 00011112245778 88888888899999999999998885554444333333
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHhhhhccc
Q 043481 128 YLISVGAFSIFKKMGMTSLRIQDFLAIGAILSA 160 (351)
Q Consensus 128 ~~~~~~~~~~~~~~g~~~~~~~~alllGailsa 160 (351)
......+. .. +++...+...|...++
T Consensus 315 ~~~~~~~~-~~------g~~~~~~~~~g~~~~~ 340 (397)
T COG0475 315 LGAYLAAR-LL------GFSKRLALGIGLLLRQ 340 (397)
T ss_pred HHHHHHHH-HH------cCcHHHHHHHHhhhhh
Confidence 22222222 22 5666777777666554
No 45
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=90.78 E-value=5.9 Score=38.07 Aligned_cols=138 Identities=13% Similarity=0.121 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhc-CCHHHHH
Q 043481 31 FFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQ-VKKKQFF 109 (351)
Q Consensus 31 ~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~-l~~~~l~ 109 (351)
-..+-+.....++++.|...+|.+...++.=..+=-..+..+++..+...+++ +.+..=..=++++..|.. .|+++.-
T Consensus 269 G~llA~~lf~~g~il~kf~~~P~~va~MIil~a~lk~~nlvp~~i~~GA~~l~-~F~sk~~t~~Lm~giGv~ytdl~ev~ 347 (438)
T COG3493 269 GMLLACTLFMAGGILGKFIGLPGPVAFMIILVAILKAANLVPKEIEEGAKQLS-QFFSKNLTWPLMAGIGVAYTDLNEVA 347 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhCcCCHHHHHHHHHHH-HHHHHhhHHHHHHhhhhccccHHHHH
Confidence 34445556667888888777887773333222221122222222111112221 344555566788999997 9999998
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhccc---ccHHHHHHHhccCC
Q 043481 110 KNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSA---TDSVCTLQVLSQDE 174 (351)
Q Consensus 110 ~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsa---Tdp~~v~~il~~~~ 174 (351)
+.......+-...+++.....+...-.++ | -+|...|..=|.+.+. |--+++.+--++++
T Consensus 348 ~alt~~~vii~~~vVl~~i~~~~f~grl~---~--~YPVEaAI~aglC~a~~GGtGDvaVLsAa~RM~ 410 (438)
T COG3493 348 AALTWQNVIIALSVVLGAILGGAFVGRLM---G--FYPVEAAITAGLCMANMGGTGDVAVLSAADRME 410 (438)
T ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHh---c--CCchHHHHHHhHHhcCCCCCCchHHhhhcchhc
Confidence 87655455444455555555544433333 2 3577777777777754 55566666666665
No 46
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=90.61 E-value=1.5 Score=41.19 Aligned_cols=88 Identities=17% Similarity=0.115 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043481 56 TALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAF 135 (351)
Q Consensus 56 ~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~ 135 (351)
.-++..+++|....+.+++.. +.. .+ =..+.+|+..|.-|.++|++++.+...+.+.+++..+..+... .+
T Consensus 167 v~lilpILiGmilGNld~~~~-~~l--~~--Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~----~~ 237 (312)
T PRK12460 167 VAALLPLVLGMILGNLDPDMR-KFL--TK--GGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF----NI 237 (312)
T ss_pred HHHHHHHHHHHHHhccchhhH-HHH--hc--cceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH----HH
Confidence 335566666665544443111 000 11 1223778888999999999999999999888888766555433 23
Q ss_pred HHHhhcCCCCCCHHHHHHhh
Q 043481 136 SIFKKMGMTSLRIQDFLAIG 155 (351)
Q Consensus 136 ~~~~~~g~~~~~~~~alllG 155 (351)
++-+.+ +.+-..+.+.|
T Consensus 238 ~i~rll---g~~~~~g~li~ 254 (312)
T PRK12460 238 FADRLV---GGTGIAGAAAS 254 (312)
T ss_pred HHHHHh---CCChhHHHHHH
Confidence 333333 45666677777
No 47
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=90.35 E-value=16 Score=34.50 Aligned_cols=197 Identities=17% Similarity=0.203 Sum_probs=104.2
Q ss_pred HHhhHhhhcCCHHHHHHhhhHHH------HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhh-hhcccccHHHH
Q 043481 94 PIIFNAGFQVKKKQFFKNFTTML------LFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIG-AILSATDSVCT 166 (351)
Q Consensus 94 ~ilF~~gl~l~~~~l~~~~~~i~------~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllG-ailsaTdp~~v 166 (351)
+--+..|+|++++.+....++.- .-|..|++.++. .|..+. .+-+. -.=| ++=++||.+-.
T Consensus 73 vFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAl-----iy~~~n------~~~p~-~~~GWaIP~ATDiAFA 140 (390)
T COG3004 73 VFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPAL-----IYLALN------AGDPA-TLEGWAIPMATDIAFA 140 (390)
T ss_pred HHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhh-----Hhheee------cCChh-hhcCcCcccHHHHHHH
Confidence 33456799999887764333222 223444444432 233331 11111 1112 56689999999
Q ss_pred HHHhccC--CCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 167 LQVLSQD--ETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIK 243 (351)
Q Consensus 167 ~~il~~~--~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~ 243 (351)
..++.-. ++| .++.-+.+-+++||.-+++.-.++.. ++.+.. .. ... +.+.. .-..++
T Consensus 141 lGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~~Ls~~---al-------~~a----~~~i~--vL~~lN 201 (390)
T COG3004 141 LGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT---TDLSMA---AL-------GIA----ALAIA--VLAVLN 201 (390)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc---CCccHH---HH-------HHH----HHHHH--HHHHHH
Confidence 9998754 467 68989999999999999887766542 122211 10 011 11111 111223
Q ss_pred HHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHH-HHHHHH-HHHH
Q 043481 244 TLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATI-SFIAET-FIFL 321 (351)
Q Consensus 244 ~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~Fv 321 (351)
++ +.+.. ...+.+....+..-..-|.+.-+|.++.|++..-...+. ++.-++.+|..+.. .++..| +-|.
T Consensus 202 ~~----~v~~l--~~Y~~~gviLW~~vlkSGVHATLAGVi~~f~IPl~~k~~--~spl~~leh~L~pwvaf~IlPlFaFa 273 (390)
T COG3004 202 RL----GVRRL--SPYLLVGVILWIAVLKSGVHATLAGVILAFFIPLKTKEG--ESPLERLEHALHPWVAFFILPLFAFA 273 (390)
T ss_pred Hh----Cchhh--hHHHHHHHHHHHHHHHhhhHHHHHHHHHHeeeeccCCCC--CCcHHHHHHHhhhhHHHHHHHHHHHc
Confidence 22 22222 223344445555556778888899999888877543322 23334445544443 443333 3345
Q ss_pred Hhhhhccc
Q 043481 322 YVFMDALD 329 (351)
Q Consensus 322 ~vG~~~~~ 329 (351)
=-|..+..
T Consensus 274 NAGvsl~g 281 (390)
T COG3004 274 NAGVSLQG 281 (390)
T ss_pred cCCccccc
Confidence 55666543
No 48
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=90.30 E-value=9.9 Score=36.04 Aligned_cols=64 Identities=6% Similarity=-0.132 Sum_probs=39.5
Q ss_pred hhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 043481 84 EDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLL--FGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLA 153 (351)
Q Consensus 84 ~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~--la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~all 153 (351)
|+.+...+-..+=...|.++|.+.+|+..+.... ......+......+...+.+. ++|+.++++
T Consensus 202 P~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~------~~~~~t~~L 267 (318)
T PF05145_consen 202 PPWLVNAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLT------GIDFLTALL 267 (318)
T ss_pred CHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHH
Confidence 4567888888888889999998887776654332 122223333334444444433 778877665
No 49
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=90.18 E-value=17 Score=34.54 Aligned_cols=99 Identities=14% Similarity=0.066 Sum_probs=51.4
Q ss_pred hhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHH
Q 043481 90 YLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQV 169 (351)
Q Consensus 90 i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~i 169 (351)
+.+.+++|.-|++++.+++||..++.-. -..+........-..++.+...+ ++....+..|-++-+.-|..+.+.
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~-~~~~~~~qfvi~Plla~~l~~l~----~~~~p~l~~GliLv~~~Pgg~~S~ 121 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKG-LILSLFINWIIGPFLMFLLAWLF----LRDLFEYIAGLILLGLARCIAMVF 121 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchH-HHHHHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHhcchHHHHH
Confidence 3455789999999999999887665333 22244445555544444332211 022233556655555555444443
Q ss_pred h----ccCCCcchhHhhhhhhhhhhHHHHHHH
Q 043481 170 L----SQDETPFLYSIVFGEGVVNDATSIVLF 197 (351)
Q Consensus 170 l----~~~~~~~l~~ll~ges~~nD~~~iil~ 197 (351)
. .+.+.+ +...+ ...|...+.++.
T Consensus 122 v~T~lAkGnva-lsv~l---t~~stLl~~~~~ 149 (328)
T TIGR00832 122 VWNQLAKGDPE-YTLVL---VAVNSLFQVFLY 149 (328)
T ss_pred HHHHHcCCCHH-HHHHH---HHHHHHHHHHHH
Confidence 3 222222 22222 356666665554
No 50
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=90.16 E-value=17 Score=34.48 Aligned_cols=178 Identities=13% Similarity=0.091 Sum_probs=91.1
Q ss_pred chHHHHHHHHHHHHHHHHhhccCCCc-cccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhh---hHHHHHHHHHHHHHH
Q 043481 52 NESITALLLGLCAGGVVLLASKDRSS-HLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNF---TTMLLFGICGTVISF 127 (351)
Q Consensus 52 P~~~~~ll~GillG~~~~~~~~~~~~-~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~---~~i~~la~~g~~~~~ 127 (351)
+-+...+..|+.+|.......+..+. +... -+.-..+.+...++--=.++|++++++.. |.....-+...++..
T Consensus 18 ~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~--~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P 95 (342)
T COG0798 18 LWVFLAIAIGILLGVHFPGLAQLLGKLEFGG--VSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGP 95 (342)
T ss_pred HHHHHHHHHHHHHHhcccchhhhcccceeCc--eehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 34666777888888754432211110 1111 13345566777777777899999887554 444444455555555
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHh-ccCCCcchhHhhhhhhhhhhHHHHHHHHHHHhhhcc
Q 043481 128 YLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVL-SQDETPFLYSIVFGEGVVNDATSIVLFNAIQSFDFN 206 (351)
Q Consensus 128 ~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il-~~~~~~~l~~ll~ges~~nD~~~iil~~~~~~~~~~ 206 (351)
+.....++..++ +.| .+..|.++-.-.|-..+.+. .+. ++--++.-..--.+||...+++|.....+.-+
T Consensus 96 ~lm~~la~~fl~-----~~p---ey~~GlILlglApC~aMVivw~~L-a~Gd~~~tlv~Va~n~l~qiv~y~~~~~~~l~ 166 (342)
T COG0798 96 LLMFALAWFFLP-----DEP---EYRAGLILLGLAPCIAMVIVWSGL-AKGDRELTLVLVAFNSLLQIVLYAPLGKFFLG 166 (342)
T ss_pred HHHHHHHHHHhC-----CCH---HHHHHHHHHHhhhhHHHHHHHHhh-ccCcHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 554444444431 334 55666666555554443333 221 11011222234569999999998755443222
Q ss_pred -CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 207 -NIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKT 244 (351)
Q Consensus 207 -~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~ 244 (351)
.....++...+.+.+.. +.+=...|.+.++...|
T Consensus 167 v~~~~v~~~~i~~Sv~ly----l~iPli~G~lTR~i~~k 201 (342)
T COG0798 167 VISISVPFWTIAKSVLLY----LGIPLIAGVLTRYILIK 201 (342)
T ss_pred hccccccHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 11122344444443333 33344555666665554
No 51
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=90.05 E-value=15 Score=35.50 Aligned_cols=92 Identities=13% Similarity=0.056 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhh-cCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhh
Q 043481 35 LCACIIIGHLIEE-NRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFT 113 (351)
Q Consensus 35 l~~~~~~~~~l~~-~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~ 113 (351)
+..+..+++++++ ...+|.-+..++.|+++-.........+ +-+-.-+.+..+++-+.+..+=..+|...+.++..
T Consensus 230 ~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~~~---id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~ 306 (368)
T PF03616_consen 230 IGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGKYK---IDRKTIDRISGISLDLFLAMALMSLKLWVLADYAL 306 (368)
T ss_pred HHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCccc---CCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3344444555554 3357988888888888877654332221 10001145777888888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 043481 114 TMLLFGICGTVISFYL 129 (351)
Q Consensus 114 ~i~~la~~g~~~~~~~ 129 (351)
+.+.+...+++++.+.
T Consensus 307 Plliil~~q~i~~~~f 322 (368)
T PF03616_consen 307 PLLIILAVQTILMVLF 322 (368)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988777777766543
No 52
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=89.84 E-value=0.61 Score=41.61 Aligned_cols=83 Identities=10% Similarity=0.006 Sum_probs=67.2
Q ss_pred HHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHH
Q 043481 86 LFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVC 165 (351)
Q Consensus 86 ~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~ 165 (351)
.+..+.+-++.-+.|++++.|.+++.......+.+......+-..+...++.. +.+|.++++.|.+..+..+..
T Consensus 158 ~l~t~a~~I~~ik~gLgt~~r~~~nv~~vc~~~~v~~~~~~a~a~~~~S~~~l------~~~ii~~~l~g~v~~~i~~~~ 231 (252)
T KOG3826|consen 158 PLRTVALTIIKIKAGLGTLPRAPENVLAVCCVLMVLPSIIEASAPAVTSHFLL------AGPIIWAFLLGIVIGSILWRF 231 (252)
T ss_pred hhhhccchHHHHHhhhcccccchhhhhHHHhhhhhhhhhhccccHHHHHHHHh------ccchHHHhccccceeeeecCC
Confidence 46778888899999999999999999998888888777777766666667665 789999999999999988876
Q ss_pred HHHHhccCC
Q 043481 166 TLQVLSQDE 174 (351)
Q Consensus 166 v~~il~~~~ 174 (351)
.-+-....+
T Consensus 232 ~r~~~~h~~ 240 (252)
T KOG3826|consen 232 PRPDYQHTQ 240 (252)
T ss_pred ccccchhhc
Confidence 655544333
No 53
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=88.73 E-value=11 Score=36.93 Aligned_cols=141 Identities=15% Similarity=0.160 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhc-CCH
Q 043481 27 ALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQ-VKK 105 (351)
Q Consensus 27 ~l~i~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~-l~~ 105 (351)
++-.-..+.+....++.++++...+|+...+++.-+++=.. ...+++..+...+ -.+.+..-..+++++..|.. +|+
T Consensus 247 ~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~~-~lvP~~~e~~a~~-~~~f~~~~lt~~lLvgiGv~~~~l 324 (414)
T PF03390_consen 247 DMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKAF-GLVPESLEEGAKQ-WYKFFSKNLTWPLLVGIGVAYTDL 324 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh-CcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhCcH
Confidence 34444455556666788888877899998877655544322 2222211111111 12456677899999999998 999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcc---cccHHHHHHHhccCC
Q 043481 106 KQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILS---ATDSVCTLQVLSQDE 174 (351)
Q Consensus 106 ~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGails---aTdp~~v~~il~~~~ 174 (351)
+++-+.......+-...+++.....+...-.++ | =+|...|+.-|-+.+ .|-=+++.+.-++++
T Consensus 325 ~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~---g--~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~ 391 (414)
T PF03390_consen 325 NDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLV---G--FYPVESAITAGLCMANMGGTGDVAVLSAANRME 391 (414)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh---C--CChHHHHHHhhhcccCCCCCCcchheehhhhcc
Confidence 999998876665555555555555444333333 2 245555555552333 244445555556655
No 54
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=88.63 E-value=13 Score=31.14 Aligned_cols=64 Identities=5% Similarity=-0.144 Sum_probs=39.3
Q ss_pred hhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 043481 84 EDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLL--FGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLA 153 (351)
Q Consensus 84 ~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~--la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~all 153 (351)
|+.+...+..++-...|.+++.+.+++..+.... .....++......+...+... ++|+.++++
T Consensus 45 P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~------~~~~~ta~L 110 (156)
T TIGR03082 45 PPWLLALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLT------GVDPLTAFL 110 (156)
T ss_pred CHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHH
Confidence 4567888888888899999998877766554332 222222333333333333332 788888864
No 55
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=88.22 E-value=27 Score=34.19 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=17.8
Q ss_pred cCcchHHHHHHHHHHhhhccc
Q 043481 273 LNLSGILTIFFCGIIMSHYTW 293 (351)
Q Consensus 273 ~g~Sgila~~v~Gl~~~~~~~ 293 (351)
......+.+++.|+.++|..+
T Consensus 243 ~~lP~fv~am~~giiirni~~ 263 (398)
T TIGR00210 243 LMLPTFVWCLFVGVILRNPLS 263 (398)
T ss_pred CCCCchHHHHHHHHHHHHHHH
Confidence 458889999999999998654
No 56
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=87.85 E-value=27 Score=33.88 Aligned_cols=151 Identities=15% Similarity=0.098 Sum_probs=90.1
Q ss_pred HHHHHHHHHhh-cCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHH
Q 043481 37 ACIIIGHLIEE-NRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTM 115 (351)
Q Consensus 37 ~~~~~~~~l~~-~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i 115 (351)
.+..+.+++++ ...+|.-+..++.|+++-.........+ ..+-.-|.+.++.|-..+=.+=.++++-++-+..-+.
T Consensus 233 vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~---v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl 309 (404)
T COG0786 233 VGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYR---VFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPL 309 (404)
T ss_pred HHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhcccc---ccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccH
Confidence 33344444443 3358999999999999887665433222 1111225678888888888888899999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH----hh--hhcccccHHHHHHHhccCCCc-c--hhHhhhhhh
Q 043481 116 LLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLA----IG--AILSATDSVCTLQVLSQDETP-F--LYSIVFGEG 186 (351)
Q Consensus 116 ~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~all----lG--ailsaTdp~~v~~il~~~~~~-~--l~~ll~ges 186 (351)
+.+-.++++...+..-+ ..++.+|. ++..+.+ .| .=.+||.-+-..++-++.|.+ | +-.=+.| +
T Consensus 310 ~viL~vQ~i~m~lfa~f---vtfr~mG~---~YdAaV~~~G~~G~gLGATPtAianM~av~~k~g~S~kAf~ivPiVG-A 382 (404)
T COG0786 310 LVILAVQTIVMALFAIF---VTFRLMGK---NYDAAVLAAGHCGFGLGATPTAIANMQAVTEKFGPSHKAFIVVPIVG-A 382 (404)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHhCc---chhHHHHhcccccCccCCcHHHHHhhhcchhhcCCCceeeEEeehHH-H
Confidence 88777776555432222 23444443 4444444 22 333455555555565666765 3 2222455 7
Q ss_pred hhhhHHHHHHH
Q 043481 187 VVNDATSIVLF 197 (351)
Q Consensus 187 ~~nD~~~iil~ 197 (351)
.+-|.+....-
T Consensus 383 ffid~ina~ii 393 (404)
T COG0786 383 FFIDIINALII 393 (404)
T ss_pred HHHHHHHHHHH
Confidence 77777774443
No 57
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=87.58 E-value=6.9 Score=36.95 Aligned_cols=139 Identities=18% Similarity=0.173 Sum_probs=83.3
Q ss_pred chHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcC--CHHHHHHhhhHHHHHHHHHHHHHHHH
Q 043481 52 NESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQV--KKKQFFKNFTTMLLFGICGTVISFYL 129 (351)
Q Consensus 52 P~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l--~~~~l~~~~~~i~~la~~g~~~~~~~ 129 (351)
...+.+++-|+++|..... +....+-.+- +..+.-.|++.+.+-|+.- +.+++||..+....+++..-++...+
T Consensus 177 ~~sv~LLlGgliIG~~~g~---~g~~~i~pf~-~~lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~li~Fgi~~Pli~a~i 252 (327)
T PF05982_consen 177 NKSVVLLLGGLIIGFLAGP---EGVESIKPFF-VDLFKGVLCLFLLEMGLVAARRLRDLRKVGWFLIAFGILMPLINALI 252 (327)
T ss_pred CchHHHHHHHHHHhheeCc---cchhhccchh-hccHHHHHHHHHHHhhHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4567778888898875431 1111111111 1245566777888888754 46688999888888888777776655
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCC---CcchhHh-hhhh-hhhhhHHHHHHHHHHH
Q 043481 130 ISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDE---TPFLYSI-VFGE-GVVNDATSIVLFNAIQ 201 (351)
Q Consensus 130 ~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~---~~~l~~l-l~ge-s~~nD~~~iil~~~~~ 201 (351)
.....+++ +++.-.+.+++.+.++-|=.++-+.+|..- .|.+.-. -.|- ==+|=.+++++|.-..
T Consensus 253 g~~lg~~~-------gls~Gg~~llavLaASASYIAvPAAmR~AiPeAnpslyl~~SLgiTFPfNi~iGIPLY~~la 322 (327)
T PF05982_consen 253 GIGLGWLL-------GLSPGGAVLLAVLAASASYIAVPAAMRAAIPEANPSLYLTASLGITFPFNILIGIPLYYALA 322 (327)
T ss_pred HHHHHHHh-------CCCCccHHHHHHHHhhHhhhhhhHHHHhhCcccCchHHHHHHHhcccchhHhhccHHHHHHH
Confidence 44444443 778888999998887766666656665421 1112111 0111 1367777777776443
No 58
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=87.56 E-value=18 Score=32.44 Aligned_cols=98 Identities=17% Similarity=0.110 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHH--hhHhhhcCCHH
Q 043481 29 SVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPI--IFNAGFQVKKK 106 (351)
Q Consensus 29 ~i~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~i--lF~~gl~l~~~ 106 (351)
++.+.+-+.+...++.+.||.+-|-.-..++.=+++-..+...+- +.+..+-..+.+ ...|.+- -+..-+.-+++
T Consensus 5 ~~~l~lTl~~y~~~~~l~~r~~~~~lnPvl~~~~~ii~~L~~~~i--~Y~~Y~~g~~~l-~~lLgPAtVALAvPLY~~~~ 81 (226)
T TIGR00659 5 IVSLFLTLLVFFGAKKLYQRFKRPYLNPLLLTPLVLVGILLLVGI--PYESYMLGGGVI-NDLLGPAVVALAIPLYKQLP 81 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhCC--CHHHHHHhhHHH-HHhhHHHHHHHHHHHHHhHH
Confidence 344455555666777777655443322222222222222222111 111122123333 3333333 23334456789
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHH
Q 043481 107 QFFKNFTTMLLFGICGTVISFYL 129 (351)
Q Consensus 107 ~l~~~~~~i~~la~~g~~~~~~~ 129 (351)
.+||++++++.-...|...+...
T Consensus 82 ~lk~~~~~Il~~~~~G~~~~~~s 104 (226)
T TIGR00659 82 QIKKYWKEIILNVAVGSVIAIIS 104 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888666666655433
No 59
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=86.87 E-value=5.7 Score=40.78 Aligned_cols=108 Identities=13% Similarity=0.147 Sum_probs=65.5
Q ss_pred ccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHH---HHHHhhhHHHHHHHHHHHHH
Q 043481 50 WANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKK---QFFKNFTTMLLFGICGTVIS 126 (351)
Q Consensus 50 ~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~---~l~~~~~~i~~la~~g~~~~ 126 (351)
++-.+.+.+++|+++|.... +++ +.+.++++.+-+|..|++.-++ .+||+..+...++++.++..
T Consensus 34 ~LG~~~gvLfvgl~~G~~g~-----------~i~-~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~~~~~ 101 (562)
T TIGR03802 34 QLGGVAGSLIVAVLIGQLGI-----------QID-PGVKAVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVFAVSG 101 (562)
T ss_pred ecchHHHHHHHHHHHHhcCC-----------CCC-hHHHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45556788999999996421 122 3477899999999999999965 45555555566665544433
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCC
Q 043481 127 FYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDE 174 (351)
Q Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~ 174 (351)
+.+++.+.+++ |+ +.+....++=|+.-+...-++....+++.+
T Consensus 102 -~~~~~~~~~~~---g~-~~~~~~Gl~aGalT~tp~l~aA~~a~~~~~ 144 (562)
T TIGR03802 102 -LITVYALAKIF---GL-DKGTAAGLAAGGLTQSAVIGTAGDAIEKLG 144 (562)
T ss_pred -HHHHHHHHHHh---CC-CHHHHHHHHhchhhccHHHHHHHHHHHhcC
Confidence 34444445444 33 334555566666654444444444445444
No 60
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=86.73 E-value=30 Score=33.07 Aligned_cols=112 Identities=15% Similarity=0.185 Sum_probs=64.9
Q ss_pred ccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHH
Q 043481 50 WANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYL 129 (351)
Q Consensus 50 ~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~ 129 (351)
.+++.+..++.|++++.......++....-.++..+.+.++++ -.-|.+++++++.+..++.+......+..+...
T Consensus 30 ~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gI----VLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~ 105 (335)
T TIGR00698 30 ALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGI----TLYGFRLTFPYIADVGPNEIVADTLILTSTFFL 105 (335)
T ss_pred CCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHH----HHHCccccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4777777777777777632100111111112233334455544 456899999999999988877666554444332
Q ss_pred HHHHHHHHH-hhcCCCCCCHHHHHHhh---hhcccccHHHHHHHhcc
Q 043481 130 ISVGAFSIF-KKMGMTSLRIQDFLAIG---AILSATDSVCTLQVLSQ 172 (351)
Q Consensus 130 ~~~~~~~~~-~~~g~~~~~~~~alllG---ailsaTdp~~v~~il~~ 172 (351)
. +++. +++ +.+...+.++| ++..++..+++.++.|.
T Consensus 106 ~----~~~g~k~l---~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A 145 (335)
T TIGR00698 106 T----VFLGSSRL---KLDKQMSILLGAGSSICGAAAVAAIEPVIKA 145 (335)
T ss_pred H----HHHHHHHh---CCChhHHHHHHcchhHHHHHHHHHhccccCC
Confidence 2 3333 233 66788888887 55566666666666654
No 61
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=86.67 E-value=34 Score=33.57 Aligned_cols=158 Identities=10% Similarity=-0.010 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhh-cCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhH
Q 043481 36 CACIIIGHLIEE-NRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTT 114 (351)
Q Consensus 36 ~~~~~~~~~l~~-~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~ 114 (351)
..+..+.+.+++ ...+|.-+..++.|+++-.........+. .+-.-+.+..+.+-+.+-.+=..+|..++.+++.+
T Consensus 229 ~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~~~~~---~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~P 305 (398)
T TIGR00210 229 LVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKKFPWV---AERAVSVIGNVSLSLFLAIALMSLQLWELADLAGP 305 (398)
T ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhCcccc---chHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 334444444443 23589999999999999887654332221 11022457778888888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCH--HHHHHhhhhccc--ccHHHHHHHhccCCCc-chhHhh-hhhhhh
Q 043481 115 MLLFGICGTVISFYLISVGAFSIFKKMGMTSLRI--QDFLAIGAILSA--TDSVCTLQVLSQDETP-FLYSIV-FGEGVV 188 (351)
Q Consensus 115 i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~--~~alllGailsa--Tdp~~v~~il~~~~~~-~l~~ll-~ges~~ 188 (351)
.+.+.+.+++++.+..-++.+ +.+|. +++- ..|-..|--+.+ |.-+-.-++-++.|.+ |-.-++ .--+.+
T Consensus 306 lliil~~q~i~~~l~~~fv~f---r~mg~-~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~ivPlvgaf~ 381 (398)
T TIGR00210 306 IALILLVQVMFMALYAIFVTF---RLMGK-DYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFIVVPLVGAFF 381 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhH---Hhccc-hHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCcceehhhhHHHHH
Confidence 999999999888754443333 33432 3221 112234545544 4445555677788854 411111 223556
Q ss_pred hhHHHHHHHHHH
Q 043481 189 NDATSIVLFNAI 200 (351)
Q Consensus 189 nD~~~iil~~~~ 200 (351)
-|..-.+.-+.+
T Consensus 382 id~~n~~~i~~f 393 (398)
T TIGR00210 382 IDIINALVIKQF 393 (398)
T ss_pred HHHhhHHHHHHH
Confidence 666665554444
No 62
>PRK03818 putative transporter; Validated
Probab=85.57 E-value=7.3 Score=39.93 Aligned_cols=80 Identities=16% Similarity=0.102 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHH---HHHHhhhHHHHHHHHHHHHHHHHH
Q 043481 54 SITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKK---QFFKNFTTMLLFGICGTVISFYLI 130 (351)
Q Consensus 54 ~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~---~l~~~~~~i~~la~~g~~~~~~~~ 130 (351)
..+.++.|+++|...... ..++.+--.+.+.++++.+-+|..|++.-++ .+||+..+...++++.++...++
T Consensus 33 ~~g~L~~gl~~G~~~~~~----~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~- 107 (552)
T PRK03818 33 IGGVLFGGIIVGHFVSQF----GLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLV- 107 (552)
T ss_pred cHHHHHHHHHHhcccccc----CcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHH-
Confidence 467788888888643211 1001000113477899999999999998855 55666666666676655555443
Q ss_pred HHHHHHHH
Q 043481 131 SVGAFSIF 138 (351)
Q Consensus 131 ~~~~~~~~ 138 (351)
++..++++
T Consensus 108 ~~~~~~~~ 115 (552)
T PRK03818 108 TAILHKLF 115 (552)
T ss_pred HHHHHHHh
Confidence 55556655
No 63
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=84.99 E-value=26 Score=36.06 Aligned_cols=108 Identities=19% Similarity=0.136 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCccccccCh---hHHHHhhhHHHhhHhhhcCCHH---HHHHhhhHHHHHHHHHHHHH
Q 043481 53 ESITALLLGLCAGGVVLLASKDRSSHLLVFNE---DLFFLYLLPPIIFNAGFQVKKK---QFFKNFTTMLLFGICGTVIS 126 (351)
Q Consensus 53 ~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~---~~~~~i~L~~ilF~~gl~l~~~---~l~~~~~~i~~la~~g~~~~ 126 (351)
...+.++.|+++|...... +. ..++++ ..+.+++|.+-++..|++--.+ .+|++..+.+.++..-++++
T Consensus 417 ~~~g~l~~gl~~g~~~~~~-~~----~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~ 491 (562)
T TIGR03802 417 TGGGALISGLVFGWLRSKH-PT----FGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILP 491 (562)
T ss_pred hhHHHHHHHHHHHHhcccC-Cc----ceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3456778888888753211 11 111222 2577888988888889887754 55677777777777777666
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhccc-ccHHHHHHHhccC
Q 043481 127 FYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSA-TDSVCTLQVLSQD 173 (351)
Q Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~alllGailsa-Tdp~~v~~il~~~ 173 (351)
.++.....++++ +++.. ...|.+-.+ |+|++.....+..
T Consensus 492 ~~~~~~~~~~~~------~~~~~--~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 492 LIITMLIGKYVL------KYDPA--LLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHHHHh------CCCHH--HHHHHhhccCCCcHHHHHHHHhc
Confidence 666666666665 55544 667776644 7777765555433
No 64
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=84.86 E-value=21 Score=34.26 Aligned_cols=139 Identities=12% Similarity=0.119 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhc-CCHH
Q 043481 28 LSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQ-VKKK 106 (351)
Q Consensus 28 l~i~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~-l~~~ 106 (351)
+-.-+.+.+....++.+++...++|+...+++.|+++-... .++++..+...+ -.+.+..-...+++...|+. .|++
T Consensus 181 ~g~Gl~~a~~~y~~g~l~~~~~~Ih~~v~mII~~vi~k~~g-llp~~i~~~a~~-~~~F~~~~lt~~ll~giGla~t~l~ 258 (347)
T TIGR00783 181 MGSGVLFAVALFMAGGLLKSFPGIPAYAFMILIAAALKAFG-LVPKEIEEGAKM-LSQFISKNLTWPLMVGVGVSYIDLD 258 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhC-CCCHHHHHHHHH-HHHHHHHHHHHHHHHHcccccCCHH
Confidence 33333444445555666664446899999998888876432 122111111111 11345556677888888986 8999
Q ss_pred HHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcc---cccHHHHHHHhccCC
Q 043481 107 QFFKNF-TTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILS---ATDSVCTLQVLSQDE 174 (351)
Q Consensus 107 ~l~~~~-~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGails---aTdp~~v~~il~~~~ 174 (351)
++-+.. ++.+.+.+.++ +...+.+...-.++ | -+|...|+.-|-+.+ .|-=+++.+.-++++
T Consensus 259 ~L~~a~t~~~vviiv~~V-lg~ii~s~lvGKll---G--~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~ 324 (347)
T TIGR00783 259 DLVAALSWQFVVICLSVV-VAMILGGAFLGKLM---G--MYPVESAITAGLCNSGMGGTGDVAVLSASNRMN 324 (347)
T ss_pred HHHHHhchhHhhhHHHHH-HHHHHHHHHHHHHh---C--CChHHHHHHHhhhccCCCCCCceeeeehhhhcc
Confidence 999988 55444444333 33333333322223 2 346666666563433 244444555555555
No 65
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=84.63 E-value=7.9 Score=36.97 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=34.2
Q ss_pred HHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHH
Q 043481 86 LFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVIS 126 (351)
Q Consensus 86 ~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~ 126 (351)
.+....+.+=++..|++.|++++||..++.+.++....+.-
T Consensus 280 ~~~~~ll~~AmaaiGl~t~~~~l~~~G~kp~~~g~i~~~~l 320 (335)
T TIGR00698 280 PLDTFLLATAMAALGLTTNVSAVKKAGVKPLFASYAGYLWL 320 (335)
T ss_pred HHHHHHHHHHHHHHhhcCcHHHHHHcCchHHHHHHHHHHHH
Confidence 46777888889999999999999999999998887765433
No 66
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=84.24 E-value=27 Score=31.48 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=23.2
Q ss_pred hHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHH
Q 043481 97 FNAGFQVKKKQFFKNFTTMLLFGICGTVISFYL 129 (351)
Q Consensus 97 F~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~ 129 (351)
+..-+.-+++.+||++++++.=.+.|...+.+.
T Consensus 78 LAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s 110 (232)
T PRK04288 78 FAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLI 110 (232)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456678999999999888666666655433
No 67
>PRK04972 putative transporter; Provisional
Probab=82.95 E-value=19 Score=36.99 Aligned_cols=110 Identities=12% Similarity=0.107 Sum_probs=73.1
Q ss_pred chHHHHHHHHHHHHHHHHhhccCCCccccccCh---hHHHHhhhHHHhhHhhhcCCH---HHHHHhhhHHHHHHHHHHHH
Q 043481 52 NESITALLLGLCAGGVVLLASKDRSSHLLVFNE---DLFFLYLLPPIIFNAGFQVKK---KQFFKNFTTMLLFGICGTVI 125 (351)
Q Consensus 52 P~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~---~~~~~i~L~~ilF~~gl~l~~---~~l~~~~~~i~~la~~g~~~ 125 (351)
-...+.++.|+++|..-..-+ . ...+++ ..+.++.|.+-+...|++--. +.++++.++.+..+...+++
T Consensus 411 G~agG~L~~gl~~g~~~~~~~-~----~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~ 485 (558)
T PRK04972 411 GNAAGLLFAGIMLGFLRANHP-T----FGYIPQGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLV 485 (558)
T ss_pred cccHHHHHHHHHHHhccccCC-C----ceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 335677888999987532111 1 111221 357788888888888887664 45677777888888877777
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcc-cccHHHHHHHhccCC
Q 043481 126 SFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILS-ATDSVCTLQVLSQDE 174 (351)
Q Consensus 126 ~~~~~~~~~~~~~~~~g~~~~~~~~alllGails-aTdp~~v~~il~~~~ 174 (351)
+.++..+..++++ ++++. .+.|++-. -|+|++.....+..+
T Consensus 486 ~~~~~~~~~~~~~------k~~~~--~~~G~~aG~~t~~~~l~~~~~~~~ 527 (558)
T PRK04972 486 PVVICFLFGAYVL------RMNRA--LLFGAIMGARTCAPAMEIISDTAR 527 (558)
T ss_pred HHHHHHHHHHHHH------cCCHH--HHHHHHhCCCCCcHHHHHHHhhcC
Confidence 7777777777776 66665 67787764 488877766655544
No 68
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=82.28 E-value=37 Score=30.45 Aligned_cols=73 Identities=18% Similarity=0.178 Sum_probs=41.8
Q ss_pred HhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhc--ccccHHHHHHHhcc
Q 043481 95 IIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAIL--SATDSVCTLQVLSQ 172 (351)
Q Consensus 95 ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGail--saTdp~~v~~il~~ 172 (351)
.-|..-+.=+++.+||+|++++.-...|...........+.+ + +.+- .+ .-+++ |.|.|.+. .+-++
T Consensus 73 VAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~----~---g~~~--~~-~~Sl~PkSvTTpiAm-~vs~~ 141 (230)
T COG1346 73 VALAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKL----F---GLSP--EL-ILSLLPKSVTTPIAM-EVSES 141 (230)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h---CCCH--HH-HHHhcccccccHHHH-HHHHh
Confidence 345556667899999999999886666665554433333332 2 3331 12 22222 55667665 55566
Q ss_pred CC-Ccch
Q 043481 173 DE-TPFL 178 (351)
Q Consensus 173 ~~-~~~l 178 (351)
.| .|.+
T Consensus 142 iGGip~l 148 (230)
T COG1346 142 IGGIPAL 148 (230)
T ss_pred cCCchHH
Confidence 54 5554
No 69
>PRK04972 putative transporter; Provisional
Probab=81.56 E-value=21 Score=36.62 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=45.1
Q ss_pred ccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHH---HHHHhhhHHHHHHHHHHHHH
Q 043481 50 WANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKK---QFFKNFTTMLLFGICGTVIS 126 (351)
Q Consensus 50 ~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~---~l~~~~~~i~~la~~g~~~~ 126 (351)
++-...+.++.|+++|.... +.+ +...++++.+-+|..|++.-.+ .+||+..+...++++.++..
T Consensus 36 ~LG~~~g~L~vgl~~g~~~~-----------~~~-~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~~~ 103 (558)
T PRK04972 36 QLGNSIGVLVVSLLLGQQHF-----------SIN-TDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSA 103 (558)
T ss_pred ecCcchHHHHHHHHHHhCCC-----------CCC-hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45666788999999996421 112 2356788888899999998855 55666566666666655554
Q ss_pred HH
Q 043481 127 FY 128 (351)
Q Consensus 127 ~~ 128 (351)
.+
T Consensus 104 ~~ 105 (558)
T PRK04972 104 LV 105 (558)
T ss_pred HH
Confidence 43
No 70
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=80.56 E-value=48 Score=31.84 Aligned_cols=106 Identities=10% Similarity=-0.012 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhH
Q 043481 35 LCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTT 114 (351)
Q Consensus 35 l~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~ 114 (351)
+....+.+..+.|+.|+|.+. ++..++++...+.... ...+ -|+.+..++-.++--..|.++|...+++..|.
T Consensus 193 l~~~~~~~g~l~~~lr~Pa~~--ll~~l~l~a~v~~~~~----~~~~-lP~wl~~va~~~iG~~IG~~f~~~~l~~~~r~ 265 (352)
T COG3180 193 LILAALLGGLLGKLLRFPAPT--LLGPLLLGAIVHFGGG----ITIQ-LPAWLLAVAQALIGALIGSRFDRSILREAKRL 265 (352)
T ss_pred HHHHHHHHHHHHHHHcCCcHH--HHHHHHHHHHhhcccc----eeee-CCHHHHHHHHHHHHHHHcccccHHHHHHhHhh
Confidence 333444455555556687765 4455555554443210 0122 24556666666677778999998887766555
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 043481 115 MLL--FGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLA 153 (351)
Q Consensus 115 i~~--la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~all 153 (351)
... +..++..+-+...+...++.. +.|+.++++
T Consensus 266 ~~~~~v~ii~l~~~~~~~a~ll~~~~------~i~~~ta~L 300 (352)
T COG3180 266 LPAILVSIIALMAIAAGMAGLLSWLT------GIDLNTAYL 300 (352)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHHHH
Confidence 332 233333333333333333332 778887765
No 71
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=80.14 E-value=30 Score=29.11 Aligned_cols=109 Identities=13% Similarity=0.087 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHH---HHHHhh-hHHHHHHHHHHHHHHHH
Q 043481 54 SITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKK---QFFKNF-TTMLLFGICGTVISFYL 129 (351)
Q Consensus 54 ~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~---~l~~~~-~~i~~la~~g~~~~~~~ 129 (351)
..+.++.|+++|..... .+... ++..--++.+.++.|.+-++..|++--.+ .+||.. ...+.++...+++....
T Consensus 24 ~~G~L~vgL~~G~~~~~-~p~~~-~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~ 101 (154)
T TIGR01625 24 AGGVLFVGLLLGHFGAT-GPLTW-YIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLL 101 (154)
T ss_pred cHHHHHHHHHHHhcccc-CCcce-ecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 56788889888875321 00000 00000124677899988899999988755 444543 23333444445555555
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHhhhhcc-cccHHHHHHHhcc
Q 043481 130 ISVGAFSIFKKMGMTSLRIQDFLAIGAILS-ATDSVCTLQVLSQ 172 (351)
Q Consensus 130 ~~~~~~~~~~~~g~~~~~~~~alllGails-aTdp~~v~~il~~ 172 (351)
..+..++++ +++.. ...|.+-. -|+|.+.....+.
T Consensus 102 ~~~~~~~~~------~~~~~--~~~G~~aGa~T~tpaL~aa~~~ 137 (154)
T TIGR01625 102 VAVALIKLL------RINYA--LTAGMLAGATTNTPALDAANDT 137 (154)
T ss_pred HHHHHHHHh------CCCHH--HHHHHHhccccChHHHHHHHHH
Confidence 555666655 55643 66676653 3777666555443
No 72
>COG2855 Predicted membrane protein [Function unknown]
Probab=78.37 E-value=22 Score=33.79 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=33.7
Q ss_pred HHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHH
Q 043481 86 LFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVIS 126 (351)
Q Consensus 86 ~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~ 126 (351)
.+..+.+..=+...|++.|.++++|...+.+.++....+.-
T Consensus 282 ~lst~ll~~aMaAlGL~t~i~~l~~~G~kpl~la~~~~~~l 322 (334)
T COG2855 282 TLSTFLLAMAMAALGLTTHIKALKKAGGKPLLLALLLWVFL 322 (334)
T ss_pred HHHHHHHHHHHHHhccccCHHHHHHcCccHHHHHHHHHHHH
Confidence 35567777888999999999999999999999887765433
No 73
>PRK05326 potassium/proton antiporter; Reviewed
Probab=77.32 E-value=17 Score=37.34 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=21.6
Q ss_pred HHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHH
Q 043481 86 LFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLF 118 (351)
Q Consensus 86 ~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~l 118 (351)
.+..++.++.-+..|+.+|++.+.+.....+.+
T Consensus 274 ~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i 306 (562)
T PRK05326 274 GLAWLAQIGMFLVLGLLVTPSRLLDIALPALLL 306 (562)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345566666666678888888887665544443
No 74
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=73.98 E-value=48 Score=29.59 Aligned_cols=91 Identities=14% Similarity=0.174 Sum_probs=44.1
Q ss_pred HHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhH--hhhcCCHHHHHHhhhHH
Q 043481 38 CIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFN--AGFQVKKKQFFKNFTTM 115 (351)
Q Consensus 38 ~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~--~gl~l~~~~l~~~~~~i 115 (351)
+...++.+.||.+.|..-..++.-+++-..+...+. +.+..+-..|.+ ...|.+-... .-+.=+++.+||+++++
T Consensus 4 ~y~~~~~l~~r~~~~~l~P~l~a~~~ii~~L~~~~i--~y~~Y~~gg~~l-~~lLgPatVALAvPLY~~~~~l~~~~~~i 80 (215)
T PF04172_consen 4 AYLIAKWLYKRFKSPFLNPLLIAIVLIIAFLLLTGI--PYEDYMQGGDIL-SFLLGPATVALAVPLYRQRRLLKKNWIPI 80 (215)
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666655544433333333333222222211 111122123333 3333333333 33344678999999998
Q ss_pred HHHHHHHHHHHHHHHH
Q 043481 116 LLFGICGTVISFYLIS 131 (351)
Q Consensus 116 ~~la~~g~~~~~~~~~ 131 (351)
+.-...|.+.+.....
T Consensus 81 l~~~~~g~~~~~~~~~ 96 (215)
T PF04172_consen 81 LVGVLVGSLVSIFSAV 96 (215)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8877777666554433
No 75
>COG2985 Predicted permease [General function prediction only]
Probab=73.36 E-value=30 Score=34.58 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=57.0
Q ss_pred HHHhhhHHHhhHhhhcCCH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccH
Q 043481 87 FFLYLLPPIIFNAGFQVKK---KQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDS 163 (351)
Q Consensus 87 ~~~i~L~~ilF~~gl~l~~---~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp 163 (351)
-+++.+.+-++..|++--+ ..+||..++-..++++- +++....++..+.++ ++ +.+.....+=||+-+...-
T Consensus 60 ~f~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli-vi~~~~~a~~l~k~~---~~-~~~~~~Gm~sGAlTsTP~L 134 (544)
T COG2985 60 HFELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI-VIAALLLAWVLHKLF---GI-DLGLIAGMFSGALTSTPGL 134 (544)
T ss_pred hhhhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHhhc---CC-CHHHhhhhhcccccCCchh
Confidence 3478888888889998874 57788888877777765 445555555555544 22 3344555666676666666
Q ss_pred HHHHHHhccCCCc
Q 043481 164 VCTLQVLSQDETP 176 (351)
Q Consensus 164 ~~v~~il~~~~~~ 176 (351)
+++..++++.+.+
T Consensus 135 ~aa~~~L~~lg~~ 147 (544)
T COG2985 135 GAAQDILRELGAP 147 (544)
T ss_pred HHHHHHHHhhccc
Confidence 7777788888765
No 76
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=71.35 E-value=93 Score=29.36 Aligned_cols=102 Identities=17% Similarity=0.099 Sum_probs=64.8
Q ss_pred hhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-C-CCHHHHHHhhhhcccccHHHHH
Q 043481 90 YLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMT-S-LRIQDFLAIGAILSATDSVCTL 167 (351)
Q Consensus 90 i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~-~-~~~~~alllGailsaTdp~~v~ 167 (351)
-.+...+|-.|-++|.|...+..|+-..+-..=+.+. ..+++....+++..|++ + +-=..++.+=+.++.+++..-.
T Consensus 49 ~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~-~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~ 127 (314)
T PF03812_consen 49 PIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIG-ALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYL 127 (314)
T ss_pred HHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHH-HHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHH
Confidence 3456678999999999999888888776655554444 34455544444332210 0 1123456667888999999999
Q ss_pred HHhccCCCc-chhHhhhhhhhhhhHHHH
Q 043481 168 QVLSQDETP-FLYSIVFGEGVVNDATSI 194 (351)
Q Consensus 168 ~il~~~~~~-~l~~ll~ges~~nD~~~i 194 (351)
++.+|.|.+ +.... +-..+||+=.+
T Consensus 128 aL~~~yGd~~D~gA~--~i~sl~~GPf~ 153 (314)
T PF03812_consen 128 ALMGQYGDEEDVGAF--SILSLNDGPFF 153 (314)
T ss_pred HHHHHhCCHHHhHHH--HHHHhhhhHHH
Confidence 999999976 33221 22346665443
No 77
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=69.27 E-value=86 Score=29.45 Aligned_cols=39 Identities=13% Similarity=0.149 Sum_probs=30.4
Q ss_pred hHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHH
Q 043481 85 DLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGT 123 (351)
Q Consensus 85 ~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~ 123 (351)
+.+.+...|..++..|..++.+..+++++......+.=.
T Consensus 210 ~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kl 248 (321)
T TIGR00946 210 SILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRF 248 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHH
Confidence 568889999999999999999888877666655444433
No 78
>PRK03818 putative transporter; Validated
Probab=68.09 E-value=58 Score=33.44 Aligned_cols=108 Identities=9% Similarity=0.018 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHH---H-hhhHHHHHHHHHHHHHHHH
Q 043481 54 SITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFF---K-NFTTMLLFGICGTVISFYL 129 (351)
Q Consensus 54 ~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~---~-~~~~i~~la~~g~~~~~~~ 129 (351)
..+.++.|+++|......+. .+ .+.+--+..+.++.|.+-+...|++--..-+. + .+...+.++...+.++.++
T Consensus 403 ~~G~L~~gl~~g~~~~~~~~-~~-~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~~~~ 480 (552)
T PRK03818 403 AGGPLIVALILGRIGSIGKL-YW-FMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLI 480 (552)
T ss_pred chHHHHHHHHHHhccCCCCc-ee-ecCHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 45678889998875431110 00 00000124577788888888888877754433 3 3556666666666666655
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHhhhhccc-ccHHHHHHHhc
Q 043481 130 ISVGAFSIFKKMGMTSLRIQDFLAIGAILSA-TDSVCTLQVLS 171 (351)
Q Consensus 130 ~~~~~~~~~~~~g~~~~~~~~alllGailsa-Tdp~~v~~il~ 171 (351)
.....++++ ++++. ...|++-.+ |+|++.....+
T Consensus 481 ~~~~~~~~~------~~~~~--~~~G~~aG~~t~tp~l~~a~~ 515 (552)
T PRK03818 481 VGILARMLA------KMNYL--TLCGMLAGSMTDPPALAFANN 515 (552)
T ss_pred HHHHHHHHH------cCCHH--HHHHHHhccCCCcHHHHHHhc
Confidence 555556666 66655 667776644 77777655543
No 79
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=67.96 E-value=69 Score=26.54 Aligned_cols=40 Identities=8% Similarity=-0.082 Sum_probs=30.6
Q ss_pred hhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 99 AGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIF 138 (351)
Q Consensus 99 ~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~ 138 (351)
.|.=-.++.+++++.+++..-+++++++..+.|....++.
T Consensus 78 VGim~~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l~ 117 (141)
T PRK04125 78 ISVINSLGVMSQYPVQIIGVIIVATILLLACTGLFSQFIL 117 (141)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667889999999998888888888777776665543
No 80
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=65.23 E-value=1.3e+02 Score=28.64 Aligned_cols=83 Identities=25% Similarity=0.383 Sum_probs=44.9
Q ss_pred HHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHh----hhhcccc
Q 043481 86 LFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAI----GAILSAT 161 (351)
Q Consensus 86 ~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alll----GailsaT 161 (351)
.+..+.+.-|=+.+|.|+..+.+.....+... ++...+++.+.+|.++.+++ +++..+|.-+ ||+-+.|
T Consensus 28 ~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~-----~~~lg~liPl~~~~iLr~~~--~l~~~daaAiAAhYGSVSavT 100 (327)
T PF05982_consen 28 FLSIYLLLAIGLKGGVELAHSGLTALLLPLLA-----AVLLGILIPLIAFPILRRLG--KLDRADAAAIAAHYGSVSAVT 100 (327)
T ss_pred HHHHHHHHHHhcccHHHHHcCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcc--CCChhhHHHHHHHcCchHHHH
Confidence 34445555566677777766555554333333 23333445566677776543 5666555554 4544444
Q ss_pred cHHHHHHHhccCCCc
Q 043481 162 DSVCTLQVLSQDETP 176 (351)
Q Consensus 162 dp~~v~~il~~~~~~ 176 (351)
=. +..+.+++.+.+
T Consensus 101 F~-~a~~~L~~~gi~ 114 (327)
T PF05982_consen 101 FA-AALAFLESQGIS 114 (327)
T ss_pred HH-HHHHHHHHCCCC
Confidence 33 344677777654
No 81
>PRK10711 hypothetical protein; Provisional
Probab=63.96 E-value=1e+02 Score=27.88 Aligned_cols=32 Identities=9% Similarity=0.211 Sum_probs=22.4
Q ss_pred hHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHH
Q 043481 97 FNAGFQVKKKQFFKNFTTMLLFGICGTVISFY 128 (351)
Q Consensus 97 F~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~ 128 (351)
+..-+.=+++.+||+++++..--.+|.+++..
T Consensus 73 LAvPLY~q~~~lk~~~~~I~~~~~vG~~v~i~ 104 (231)
T PRK10711 73 LAFPLYEQLHQIRARWKSIISICFIGSVVAMV 104 (231)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667899999999988866666655543
No 82
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=59.59 E-value=41 Score=23.38 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhh---cCccchHHHHHHHHHHHHHHH
Q 043481 34 LLCACIIIGHLIEE---NRWANESITALLLGLCAGGVV 68 (351)
Q Consensus 34 ll~~~~~~~~~l~~---~~~iP~~~~~ll~GillG~~~ 68 (351)
++.....+++++.| +.|+|.+...++.|+++..+.
T Consensus 19 ~vG~~m~~S~~lS~~LT~GrihGSAIAI~lGLvLAy~G 56 (60)
T PF03818_consen 19 VVGIIMWVSYWLSKKLTRGRIHGSAIAIVLGLVLAYIG 56 (60)
T ss_pred HHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHc
Confidence 33334444555543 357999999999999998764
No 83
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=56.46 E-value=1.3e+02 Score=29.83 Aligned_cols=20 Identities=5% Similarity=-0.062 Sum_probs=13.5
Q ss_pred ccchHHHHHHHHHHHHHHHH
Q 043481 50 WANESITALLLGLCAGGVVL 69 (351)
Q Consensus 50 ~iP~~~~~ll~GillG~~~~ 69 (351)
|+|-.....+.|++-|.+..
T Consensus 284 R~~wL~v~~~~~~~t~~ii~ 303 (449)
T TIGR00400 284 RIIWLLVLLVSSTFTATIIS 303 (449)
T ss_pred ccchHHHHHHHHHHHHHHHH
Confidence 46777777777777766544
No 84
>PRK01658 holin-like protein; Validated
Probab=54.89 E-value=1.1e+02 Score=24.60 Aligned_cols=40 Identities=8% Similarity=0.004 Sum_probs=31.6
Q ss_pred hhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 99 AGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIF 138 (351)
Q Consensus 99 ~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~ 138 (351)
.|.=-..+.+++++.+++..-+++++++..+.|....++.
T Consensus 75 VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~l~ 114 (122)
T PRK01658 75 VGVMNYGDFLSSKGISLFLVVVISTFVVMIVTGYLTQLLA 114 (122)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555567899999999999888888888887777666544
No 85
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=51.65 E-value=8 Score=37.21 Aligned_cols=104 Identities=16% Similarity=0.202 Sum_probs=9.1
Q ss_pred hhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHH-HhhhHHHhhHhhhcCCHHHHH---HhhhHHHHHHHH
Q 043481 46 EENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFF-LYLLPPIIFNAGFQVKKKQFF---KNFTTMLLFGIC 121 (351)
Q Consensus 46 ~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~-~i~L~~ilF~~gl~l~~~~l~---~~~~~i~~la~~ 121 (351)
.+..+.+..++.+++|+++...-. .++..+ .-+.+. .++.|+.....|.++|.+.+. +.+.....+...
T Consensus 229 a~~~g~s~~l~af~~Gl~~~~~~~------~~~~~~-~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~ 301 (380)
T PF00999_consen 229 AEILGLSGILGAFIAGLILSNSPF------AERLEE-KLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIA 301 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccceeeeeehccccccc------cchhhh-cccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHH
Confidence 333467888888888888872111 111111 112244 677788888899999998884 444433333322
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccH
Q 043481 122 GTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDS 163 (351)
Q Consensus 122 g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp 163 (351)
..+.-........++ . +.++.+++.+|....+-..
T Consensus 302 ~~~~k~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~g~ 336 (380)
T PF00999_consen 302 ILLGKFIGVYLASRL-F------GIPWKEALFIGLGMLPRGE 336 (380)
T ss_dssp ----------------------------HHHHTTTTSS--HH
T ss_pred HHHhhhceeehhhhh-c------ccccchhHHHHHhhcCccH
Confidence 222222221111111 1 6788999999877764433
No 86
>COG2985 Predicted permease [General function prediction only]
Probab=51.24 E-value=1.5e+02 Score=29.75 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCccccccCh---hHHHHhhhHHHhhHhhhcCCH-----HHHHHhhhHHHHHHHHHHHH
Q 043481 54 SITALLLGLCAGGVVLLASKDRSSHLLVFNE---DLFFLYLLPPIIFNAGFQVKK-----KQFFKNFTTMLLFGICGTVI 125 (351)
Q Consensus 54 ~~~~ll~GillG~~~~~~~~~~~~~~~~~~~---~~~~~i~L~~ilF~~gl~l~~-----~~l~~~~~~i~~la~~g~~~ 125 (351)
..+.++.|+++|..... .+. .+.+++ ..+.++.+ .+|.+|..+|- +.+-...-+++..+.+-+++
T Consensus 398 aGGpLivaLiLG~ig~i-Gpl----~w~mP~~An~~lrelGl--~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~v 470 (544)
T COG2985 398 AGGPLIVALILGFIGAI-GPL----TWFMPPGALLALRELGL--ALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLV 470 (544)
T ss_pred cccHHHHHHHHHHhccc-Cce----EEEcChhHHHHHHHHHH--HHHHHhhccccccchHhhhcccchhhhhHHHHHHHH
Confidence 35668888888875431 111 122222 23455554 55666655552 23334455667777777888
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcc-cccHHHHHH
Q 043481 126 SFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILS-ATDSVCTLQ 168 (351)
Q Consensus 126 ~~~~~~~~~~~~~~~~g~~~~~~~~alllGails-aTdp~~v~~ 168 (351)
+.+.++++.+|++ +++|. .+.|++.. -|||.+...
T Consensus 471 p~i~~~llg~~v~------kmn~~--~l~G~laGs~T~ppaLa~ 506 (544)
T COG2985 471 PVIIVFLLGRYVL------KMNWL--LLCGALAGSMTDPPALAF 506 (544)
T ss_pred HHHHHHHHHHHHH------hccHH--HHhhHHhcCCCChHHHHH
Confidence 8888888888887 55654 67787774 499977643
No 87
>COG3329 Predicted permease [General function prediction only]
Probab=50.69 E-value=79 Score=29.75 Aligned_cols=147 Identities=17% Similarity=0.201 Sum_probs=73.2
Q ss_pred HHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCC--HHHHHHhhhHHHHHH
Q 043481 42 GHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVK--KKQFFKNFTTMLLFG 119 (351)
Q Consensus 42 ~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~--~~~l~~~~~~i~~la 119 (351)
-+++++. .+.+.+..++.|+++|.+...-.. +-.+. -++| +++-.|++.+.+-|++-. .+++||.....+.++
T Consensus 208 ~ell~Es-flnpal~lllggl~iGlitGe~g~-~vl~~-F~~~--lFqGvL~lflL~MGm~A~rrl~elrk~g~~~v~fg 282 (372)
T COG3329 208 WELLQES-FLNPALVLLLGGLAIGLITGEQGE-SVLKP-FFDP--LFQGVLCLFLLDMGMTAGRRLKELRKVGQGLVLFG 282 (372)
T ss_pred HHHHHHH-HcCchHHHHHHHHHHhheeccCch-hhhhh-hhHH--HHHHHHHHHHHHHhHHHHHHHHHHHhcCcceehHH
Confidence 4555553 366667888899999876431111 10111 1122 566667778888887643 457777765555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHhhhhcccccHHHHHHHhccCCCc----c--hhHhhhhhhhhhhHH
Q 043481 120 ICGTVISFYLISVGAFSIFKKMGM-TSLRIQDFLAIGAILSATDSVCTLQVLSQDETP----F--LYSIVFGEGVVNDAT 192 (351)
Q Consensus 120 ~~g~~~~~~~~~~~~~~~~~~~g~-~~~~~~~alllGailsaTdp~~v~~il~~~~~~----~--l~~ll~ges~~nD~~ 192 (351)
++.-++...+.-.+.+.. |. .|++.....+++.+.++.|=.++-+.+|- ..| . +..-+-----+|=.+
T Consensus 283 llaPil~g~ig~~lg~~a----~y~tgfs~g~~vllAVlaaSaSyIa~PaalR~-~iPeAnPs~yl~~Slgvtfpfni~i 357 (372)
T COG3329 283 LLAPILHGFIGLLLGMIA----GYPTGFSDGGVVLLAVLAASASYIAVPAALRL-AIPEANPSLYLGASLGVTFPFNITI 357 (372)
T ss_pred HHHHHHHHHHHHHHHHHh----cccccCCCcchHHHHHHhcchhhccccHHHhc-cCCCCCCcceeehhhccccceeeee
Confidence 544333322211111111 11 03334346666666655554444455542 222 1 222111112377778
Q ss_pred HHHHHH
Q 043481 193 SIVLFN 198 (351)
Q Consensus 193 ~iil~~ 198 (351)
++++|.
T Consensus 358 gIPLyi 363 (372)
T COG3329 358 GIPLYI 363 (372)
T ss_pred chHHHH
Confidence 888874
No 88
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=50.12 E-value=37 Score=36.37 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=46.9
Q ss_pred hHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHH
Q 043481 85 DLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSV 164 (351)
Q Consensus 85 ~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~ 164 (351)
+....+++|+-.-..|++.|...+.+ +............... +.+...-+.+ +.|+.+++.+|.+++.-.-.
T Consensus 309 ~~~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~-l~t~~~sl~~------k~p~~~~l~l~~lm~~kgl~ 380 (769)
T KOG1650|consen 309 DLVSGLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKL-LSTLGTSLYC------KLPLRDSLALGLLMSTKGLV 380 (769)
T ss_pred HHHHHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHh------cCchhHHHHHHHHHHhhhHH
Confidence 34556889999999999999999999 3333322222222222 2222222233 78999999999988876554
Q ss_pred HH
Q 043481 165 CT 166 (351)
Q Consensus 165 ~v 166 (351)
..
T Consensus 381 el 382 (769)
T KOG1650|consen 381 EL 382 (769)
T ss_pred HH
Confidence 44
No 89
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=49.40 E-value=42 Score=32.50 Aligned_cols=106 Identities=10% Similarity=0.074 Sum_probs=65.1
Q ss_pred hhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHH-HhhhhcccccHHHHHH
Q 043481 90 YLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFL-AIGAILSATDSVCTLQ 168 (351)
Q Consensus 90 i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~al-llGailsaTdp~~v~~ 168 (351)
..+...++.-|.+.|.+.+++..+....+++. .+.-..+.....++....+ .++.+. ..+.+.++..|.-..+
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG-~v~q~~i~pl~~f~~~~~~-----~lP~~~~ag~~Lvtc~~p~g~~~ 190 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALG-FVPQYLIMPLLGFLLSKVL-----LLPAALAAGLLLVTCVSPGGGGN 190 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeeh-HHHHHHHHHHHHHhhhhHh-----hCCccccceeEEEEeccCCcchh
Confidence 45566678889999999999887775554432 2223333333333322222 233334 5677889999988888
Q ss_pred HhccCCCcchhHhhhhhhhhhhHHHHHHHHHHH
Q 043481 169 VLSQDETPFLYSIVFGEGVVNDATSIVLFNAIQ 201 (351)
Q Consensus 169 il~~~~~~~l~~ll~ges~~nD~~~iil~~~~~ 201 (351)
.+..+..+.-.++...+...+...++++.-...
T Consensus 191 ~~~~~~~~g~v~lsilmT~~stv~avi~~pl~s 223 (371)
T KOG2718|consen 191 YLTSKRLPGDVTLSILMTTISTVLAVILTPLLS 223 (371)
T ss_pred hheeecCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 776665554455556667777777776655443
No 90
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=48.12 E-value=2e+02 Score=25.51 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=36.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCCCcchhHhhhhhhhhhhHHHHH
Q 043481 131 SVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIV 195 (351)
Q Consensus 131 ~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~~~~l~~ll~ges~~nD~~~ii 195 (351)
++..|...+.+|- +......-++|.+.|+|......+-..+. .|+..+...+...+.+.+-.+
T Consensus 7 sf~gYia~r~~G~-r~Gl~ltg~~GGlvSSTA~t~~la~~~r~-~p~~~~~~~~~i~lA~~~m~~ 69 (211)
T PF13194_consen 7 SFAGYIAVRLLGP-RRGLLLTGLLGGLVSSTATTVSLARRSRE-NPELSRLLAAGILLASAVMFV 69 (211)
T ss_pred hHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHHHHHHHHHhh-CcchhHHHHHHHHHHHHHHHH
Confidence 3444555555553 55677788899999998776665543222 334444444455555554433
No 91
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=47.34 E-value=2.9e+02 Score=27.37 Aligned_cols=105 Identities=20% Similarity=0.167 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcc--hHHHHHHHHHHHHHHH-hcCcch----HHHHHHHHHHhhhccc--------
Q 043481 229 ALGIVLGLLSAYIIKTLYFLRHSTDRE--GAPMMLMAYLSCILAE-LLNLSG----ILTIFFCGIIMSHYTW-------- 293 (351)
Q Consensus 229 ~~G~~~G~~~~~~~~~~~~~~~~~~~~--~~l~l~~~~~~~~~ae-~~g~Sg----ila~~v~Gl~~~~~~~-------- 293 (351)
.+|.+.|....+...++.+ |-..... ..+..-...+.-.++. ....|+ -...++.|++++|.+-
T Consensus 300 ~~gav~Gl~gT~~~p~l~~-riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~ 378 (432)
T PF06963_consen 300 GLGAVFGLLGTWVYPWLMK-RIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVT 378 (432)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3466677777776666643 1111111 1111111222222222 445543 6778888999998542
Q ss_pred ----cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchh
Q 043481 294 ----HNVTESSRITTKHAFATISFIAETFIFLYVFMDALDIDKWKA 335 (351)
Q Consensus 294 ----~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~~~~~~~ 335 (351)
++.+++.|..+......+.++++.+-|+. ++..++.++.++
T Consensus 379 qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~-~ii~~~P~~F~~ 423 (432)
T PF06963_consen 379 QIMQENVPESERGAVSGVQNSLQSLFELLSFVL-TIIFPRPSQFGW 423 (432)
T ss_pred HhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH-HhccCChHhcCh
Confidence 34567777777777888888999888876 555555555443
No 92
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=47.11 E-value=1e+02 Score=28.01 Aligned_cols=56 Identities=7% Similarity=0.211 Sum_probs=30.7
Q ss_pred HHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 043481 267 CILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDAL 328 (351)
Q Consensus 267 ~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~ 328 (351)
-.+++.++.+.+++-..+|+.+++......+++ +..+.++.+.-.++....|++++
T Consensus 8 ~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~------~~~~~l~~igl~~llF~~Gl~~d 63 (273)
T TIGR00932 8 VPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNV------EGVNHLAEFGVILLMFLIGLELD 63 (273)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhCcccccCCCCh------HHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666677777777777777775422111111 22444455555556666666654
No 93
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=46.62 E-value=1.6e+02 Score=25.68 Aligned_cols=27 Identities=22% Similarity=0.075 Sum_probs=20.0
Q ss_pred hhHhhhhhhhhhhHHHHHHH-HHHHhhh
Q 043481 178 LYSIVFGEGVVNDATSIVLF-NAIQSFD 204 (351)
Q Consensus 178 l~~ll~ges~~nD~~~iil~-~~~~~~~ 204 (351)
+..++.-.+++-|+.+...+ ..+.+..
T Consensus 3 l~~lLtf~aG~iDa~~fl~~~~~F~s~~ 30 (209)
T PF06912_consen 3 LALLLTFIAGFIDAYSFLALGGVFVSFM 30 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHh
Confidence 45566778899999999888 5665543
No 94
>PRK01821 hypothetical protein; Provisional
Probab=45.97 E-value=1.7e+02 Score=24.02 Aligned_cols=39 Identities=10% Similarity=0.203 Sum_probs=29.1
Q ss_pred hhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 99 AGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSI 137 (351)
Q Consensus 99 ~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~ 137 (351)
.|.=-..+.+++++.++...-+++++++..+.+....++
T Consensus 80 VGim~~~~ll~~~~~~il~~ivvST~lvl~vtg~~~~~l 118 (133)
T PRK01821 80 VGVMQYYDLLRAQFGPIVVSCIVSTLVVLLVVGWSSHYV 118 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555778999999988888888888777777665554
No 95
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=43.18 E-value=1.3e+02 Score=32.30 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=11.3
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHhhh
Q 043481 265 LSCILAELLNLSGILTIFFCGIIMSH 290 (351)
Q Consensus 265 ~~~~~ae~~g~Sgila~~v~Gl~~~~ 290 (351)
++.+++|.+.++..+-.+++|+.++.
T Consensus 28 ~s~~lkeRl~Ls~~~v~Ll~GiilGP 53 (810)
T TIGR00844 28 VSLFVKEKLYIGESMVASIFGLIVGP 53 (810)
T ss_pred HHHHHHhhcCCcHHHHHHHHHHHhhh
Confidence 33334444444444444444444443
No 96
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=42.30 E-value=3.2e+02 Score=26.28 Aligned_cols=61 Identities=15% Similarity=0.272 Sum_probs=45.8
Q ss_pred HHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHh
Q 043481 87 FFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAI 154 (351)
Q Consensus 87 ~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alll 154 (351)
+.++++..++-.+=+.+|++.+.|...+.+-..+.+++......+.+.. ++ |+++.+++++
T Consensus 26 Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~-l~------G~~~~~~~~~ 86 (347)
T TIGR00783 26 FLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGT-LF------GLGFDHSLMY 86 (347)
T ss_pred hHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hc------CCCHhHhhhe
Confidence 7888888888888899999999999888777677676655544444433 34 7788877765
No 97
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=39.66 E-value=3.7e+02 Score=26.26 Aligned_cols=62 Identities=16% Similarity=0.241 Sum_probs=44.4
Q ss_pred HHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHh
Q 043481 86 LFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAI 154 (351)
Q Consensus 86 ~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alll 154 (351)
-+.+++.+.++-.+=+.+|++.+-|...+.+...+.+++.... .+...-.++ |.++...+++
T Consensus 111 nFL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~~-~g~lVG~~~------G~~~~d~~m~ 172 (438)
T COG3493 111 NFLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAAA-VGILVGLLF------GLSFQDTMMY 172 (438)
T ss_pred ChHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHh------CCChHHeeee
Confidence 4788999999999999999999988888777666666544433 333333344 7788776654
No 98
>COG3329 Predicted permease [General function prediction only]
Probab=39.34 E-value=2.5e+02 Score=26.61 Aligned_cols=112 Identities=17% Similarity=0.245 Sum_probs=63.0
Q ss_pred cchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 043481 51 ANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLI 130 (351)
Q Consensus 51 iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~ 130 (351)
+.+.+..++.|+++..+-..+.. + +--.+.+....+.-|=|.+|.|++.+.+-.. +.-...++.+..+ +
T Consensus 16 ~sP~llFf~~Gmlia~~ksdl~i--P----~~i~~~lslyLL~aIG~kGGveir~snl~a~----v~~~~~~~aL~~l-i 84 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKSDLEI--P----EAIYQALSLYLLLAIGFKGGVEIRNSNLTAM----VLPVALGVALGFL-I 84 (372)
T ss_pred ccchHHHHHHHHHHHHHhccccC--c----hHHHHHHHHHHHHHHhcccceeeecCCcchh----HHHHHHHHHHHHH-H
Confidence 56667888889988765321110 1 1112445566666777778877776655554 3333445555543 3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHH---HHHHHhccCCC
Q 043481 131 SVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSV---CTLQVLSQDET 175 (351)
Q Consensus 131 ~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~---~v~~il~~~~~ 175 (351)
...+++++.++ ++.+..++.-.|+.-.++|.+ +.++.++|.|.
T Consensus 85 ~~ia~f~l~kl--~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~gi 130 (372)
T COG3329 85 VFIAYFLLRKL--PKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGI 130 (372)
T ss_pred HHHHHHHHHHc--cccchHHHHHHHhhccchhHHHHHHHHHHHHHcCc
Confidence 35566666554 355666666665555555443 33366777764
No 99
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=38.69 E-value=2e+02 Score=22.73 Aligned_cols=11 Identities=27% Similarity=0.775 Sum_probs=5.0
Q ss_pred HHHHHHHhhhc
Q 043481 281 IFFCGIIMSHY 291 (351)
Q Consensus 281 ~~v~Gl~~~~~ 291 (351)
++.+|+.+.+.
T Consensus 33 ~~~~g~~~~~~ 43 (111)
T PF09946_consen 33 VFLAGILLVYL 43 (111)
T ss_pred HHHHHHHHHHH
Confidence 44445544443
No 100
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=37.93 E-value=4.1e+02 Score=26.24 Aligned_cols=62 Identities=16% Similarity=0.322 Sum_probs=48.3
Q ss_pred HHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHh
Q 043481 86 LFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAI 154 (351)
Q Consensus 86 ~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alll 154 (351)
-+.+++...++-.+=+.+|++.+.|...+.+-..+.+++.+....+.+... + |.++.+++++
T Consensus 94 ~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l-~------G~~~~~~i~~ 155 (414)
T PF03390_consen 94 NFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGML-F------GYSFKDAIFY 155 (414)
T ss_pred ChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h------CCCHHHHHHH
Confidence 478888999999999999999999999888887777776666555554443 3 7888887765
No 101
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=37.81 E-value=1.7e+02 Score=27.69 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=32.2
Q ss_pred HhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHH
Q 043481 89 LYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISF 127 (351)
Q Consensus 89 ~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~ 127 (351)
...+|+.-|.-|-.+|++.+.|..-+-..+++..++++.
T Consensus 200 ~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg 238 (314)
T PF03812_consen 200 PILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTG 238 (314)
T ss_pred CeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHh
Confidence 356888899999999999999999888888877655554
No 102
>PF15179 Myc_target_1: Myc target protein 1
Probab=36.94 E-value=68 Score=27.69 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 219 TFLYLYFTSTALGIVLGLLSAYIIKTLY 246 (351)
Q Consensus 219 ~~l~~~~~~i~~G~~~G~~~~~~~~~~~ 246 (351)
+.+..|..++++|+++|.++..++.++.
T Consensus 20 ~lIlaF~vSm~iGLviG~li~~LltwlS 47 (197)
T PF15179_consen 20 DLILAFCVSMAIGLVIGALIWALLTWLS 47 (197)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777766555555544
No 103
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=36.60 E-value=3e+02 Score=25.70 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=17.7
Q ss_pred hHHHHhhhHHHhhHhhhcCCHH
Q 043481 85 DLFFLYLLPPIIFNAGFQVKKK 106 (351)
Q Consensus 85 ~~~~~i~L~~ilF~~gl~l~~~ 106 (351)
+...++.+|.++|..-.+.+.+
T Consensus 40 ~~v~~i~lP~lif~~~~~~~~~ 61 (321)
T TIGR00946 40 RFVINFALPLTIFHSISTTLAD 61 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999988776654
No 104
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=36.05 E-value=1.4e+02 Score=29.47 Aligned_cols=42 Identities=10% Similarity=0.036 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc------ccccchhhHHHHHHHHHHHH
Q 043481 307 AFATISFIAETFIFLYVFMDAL------DIDKWKASNARNIFAVSSTM 348 (351)
Q Consensus 307 ~~~~~~~~~~~~~Fv~vG~~~~------~~~~~~~~~~~~~~~~~~~~ 348 (351)
..+-+..-+..+||..+|+++. ...+++....-++.++.+.+
T Consensus 63 l~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmi 110 (423)
T PRK14855 63 LEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGML 110 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchH
Confidence 3445667888999999999993 23456666666666666554
No 105
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=35.76 E-value=2e+02 Score=22.00 Aligned_cols=45 Identities=9% Similarity=-0.045 Sum_probs=30.0
Q ss_pred HHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 043481 88 FLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISV 132 (351)
Q Consensus 88 ~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~ 132 (351)
.+..+-++=-..|.=-..+.+++++.+++..-+++++++....+.
T Consensus 49 ~~m~lfFvPa~VGi~~~~~~l~~~~~~i~~~i~vsT~l~~~~tg~ 93 (96)
T PF03788_consen 49 KNMALFFVPAGVGIMEYFDLLAQEGLPILVVIVVSTLLVLAVTGW 93 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333345666667889999999998888887777655543
No 106
>COG0679 Predicted permeases [General function prediction only]
Probab=35.64 E-value=3.7e+02 Score=25.12 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=30.3
Q ss_pred hHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHH
Q 043481 85 DLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGIC 121 (351)
Q Consensus 85 ~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~ 121 (351)
+.+.+...|..++..|..++.+..++..++....+..
T Consensus 196 ~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~ 232 (311)
T COG0679 196 DLLASAASPLALIALGLSLAFLKLKGSKPPIILIALS 232 (311)
T ss_pred HHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHH
Confidence 6688899999999999999997777777766665544
No 107
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=34.82 E-value=1.2e+02 Score=30.07 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhh
Q 043481 277 GILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDIDKWKAS 336 (351)
Q Consensus 277 gila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~~~~~~~~ 336 (351)
|++|+++.-+.-+ ++.+++-|..+..+...++|+++|.. ++.++|.-.
T Consensus 523 Gila~l~vEl~qs-----------~~il~~~w~a~~~Lia~~L~L~iGli-PWiDN~aHl 570 (652)
T KOG2290|consen 523 GILACLFVELFQS-----------WQILERPWRAFFHLIATLLVLCIGLI-PWIDNWAHL 570 (652)
T ss_pred chHHHHHHHHHhh-----------hHhhhhHHHHHHHHHHHHHHHHhccc-cchhhHHHH
Confidence 5555555554433 33345568888889999999999865 888888654
No 108
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=34.57 E-value=1.3e+02 Score=29.37 Aligned_cols=43 Identities=16% Similarity=0.080 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc------ccccchhhHHHHHHHHHHHH
Q 043481 306 HAFATISFIAETFIFLYVFMDAL------DIDKWKASNARNIFAVSSTM 348 (351)
Q Consensus 306 ~~~~~~~~~~~~~~Fv~vG~~~~------~~~~~~~~~~~~~~~~~~~~ 348 (351)
...+-+..-+..+||..+|+++. ...+++....-.+.++.+.+
T Consensus 55 ~l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi 103 (383)
T PRK14854 55 NLMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLA 103 (383)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchH
Confidence 34445667888999999999993 23466666666666666554
No 109
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=33.99 E-value=1.6e+02 Score=28.77 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc------ccccchhhHHHHHHHHHHHH
Q 043481 307 AFATISFIAETFIFLYVFMDAL------DIDKWKASNARNIFAVSSTM 348 (351)
Q Consensus 307 ~~~~~~~~~~~~~Fv~vG~~~~------~~~~~~~~~~~~~~~~~~~~ 348 (351)
..+-+...+..+||..+|+++. ...+++....-++.++.+.+
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmi 106 (388)
T PRK09561 59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGML 106 (388)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchH
Confidence 4455677888999999999993 23456666666666666554
No 110
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=30.58 E-value=1.4e+02 Score=29.65 Aligned_cols=80 Identities=9% Similarity=0.040 Sum_probs=45.9
Q ss_pred HHHhcCcchHHHHHHHHHHhhhccccCCChhHH-----------HHHHHHHHHHHHHHHHHHHHHhhhhcc------ccc
Q 043481 269 LAELLNLSGILTIFFCGIIMSHYTWHNVTESSR-----------ITTKHAFATISFIAETFIFLYVFMDAL------DID 331 (351)
Q Consensus 269 ~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~Fv~vG~~~~------~~~ 331 (351)
=.|..++--.+.+.+..+..+|..+++..++.. +..+...+-+...+..+||..+|+++. ...
T Consensus 19 ~~e~~~GilLl~a~~~Ali~ANsp~~~~Y~~~~~~~~~~~~~~~~l~~sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs 98 (438)
T PRK14856 19 KSESFGGIFLFLNAVLAMVVANSFLKESYFALWHTPFGFQIGDFFIGFSLHNWIDDVLMALFFLMIGLEIKRELLFGELS 98 (438)
T ss_pred hcccHHHHHHHHHHHHHHHHHhCCcHHHHHHHHcCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 334445555566667777777754321000000 011234455677889999999999993 234
Q ss_pred cchhhHHHHHHHHHHHH
Q 043481 332 KWKASNARNIFAVSSTM 348 (351)
Q Consensus 332 ~~~~~~~~~~~~~~~~~ 348 (351)
+++....-++.++.+.+
T Consensus 99 ~~rka~lPi~AAlGGmi 115 (438)
T PRK14856 99 SFKKASFPVIAALGGMI 115 (438)
T ss_pred ChHHHHHHHHHHHhccH
Confidence 55666666666666554
No 111
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=30.58 E-value=1.6e+02 Score=25.01 Aligned_cols=95 Identities=12% Similarity=0.144 Sum_probs=46.2
Q ss_pred cCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccC--------
Q 043481 102 QVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQD-------- 173 (351)
Q Consensus 102 ~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~-------- 173 (351)
++|+..-||+.+.+....+....+..+..+.....+|+.-+=.++.|. ++|.+++.---++...-+|+.
T Consensus 5 ~idk~~YRk~~n~v~~~~v~~lai~sl~~s~llI~lFg~~~~~nf~~N---llGVil~~~~~~~~l~~~k~~p~m~Ev~Y 81 (165)
T PF11286_consen 5 EIDKERYRKHLNRVIVACVASLAILSLAFSQLLIALFGGESGGNFHWN---LLGVILGLLLTSALLRQLKTHPFMTEVYY 81 (165)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeee---HHHHHHHHHHHHHHHHHHccChHHHHHHH
Confidence 678888888877766544444444444444444444432111122232 334444443334444444422
Q ss_pred ----C-----CcchhHhhhhhhhhhhHHHHHHHHH
Q 043481 174 ----E-----TPFLYSIVFGEGVVNDATSIVLFNA 199 (351)
Q Consensus 174 ----~-----~~~l~~ll~ges~~nD~~~iil~~~ 199 (351)
+ ..|--+-+..++--||.-|..+...
T Consensus 82 vW~LKq~ln~I~rkl~~ik~aa~~~d~~Al~iL~F 116 (165)
T PF11286_consen 82 VWQLKQLLNKIYRKLHKIKAAAEQGDPDALKILRF 116 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 1122223455566788877766554
No 112
>PF06610 DUF1144: Protein of unknown function (DUF1144); InterPro: IPR010574 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.07 E-value=1.4e+02 Score=24.54 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=36.1
Q ss_pred hhhhhHHHHHHHHHHHh--hh-ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 186 GVVNDATSIVLFNAIQS--FD-FNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTL 245 (351)
Q Consensus 186 s~~nD~~~iil~~~~~~--~~-~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~ 245 (351)
..+-|.++.+.|+.=.. +. ..+.+.. +++.......+.+.+.|...|++..++.|..
T Consensus 81 ~~l~D~lAyvsFQsPVYaaIL~~vGA~~~---qivtav~snavvs~~mG~~YG~FLd~cRrlF 140 (143)
T PF06610_consen 81 KNLADLLAYVSFQSPVYAAILWFVGADGD---QIVTAVSSNAVVSMVMGRPYGYFLDYCRRLF 140 (143)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45789999988873221 11 1122332 3444555667778888889888888876654
No 113
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=29.72 E-value=3.5e+02 Score=26.32 Aligned_cols=99 Identities=8% Similarity=-0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCCCcchhHhhhhhhhhhhHHHHHHHHHHHhhhccC
Q 043481 128 YLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNAIQSFDFNN 207 (351)
Q Consensus 128 ~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~~~~l~~ll~ges~~nD~~~iil~~~~~~~~~~~ 207 (351)
.++...+..+.|. ..|+..++.+| ..+||.|.+|+.+..+.|= .|-.+-..-..+-.....+.
T Consensus 237 ivv~i~~~ll~P~----a~pLig~Lm~G------------NllrEsGv~rLs~taqn~l-~nivTifLGl~vG~t~~A~~ 299 (399)
T TIGR03136 237 IVAAMLLCLLLPV----ASPLILSFFLG------------VAIKEAQIEPYQNLLEKTL-TYGSTLFLGLVLGVLCEAST 299 (399)
T ss_pred HHHHHHHHHHccc----HHHHHHHHHHH------------HHHHHhCcHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHh
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 208 IDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIK 243 (351)
Q Consensus 208 ~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~ 243 (351)
+-..+-..++.--+..+..+.+.|+..|++..+..+
T Consensus 300 FL~~~tl~Il~LGlvAF~~~tagGvl~aK~mn~fs~ 335 (399)
T TIGR03136 300 LLDPRVSILLVLGITALLISGIGGVLGGWFVYWFSK 335 (399)
T ss_pred hCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
No 114
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=28.89 E-value=1.6e+02 Score=28.77 Aligned_cols=43 Identities=19% Similarity=0.205 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc------ccccchhhHHHHHHHHHHHH
Q 043481 306 HAFATISFIAETFIFLYVFMDAL------DIDKWKASNARNIFAVSSTM 348 (351)
Q Consensus 306 ~~~~~~~~~~~~~~Fv~vG~~~~------~~~~~~~~~~~~~~~~~~~~ 348 (351)
...+-+...+..+||..+|+++. ...+++....-++.++.+.+
T Consensus 58 sl~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmi 106 (389)
T PRK09560 58 SLLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMV 106 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchH
Confidence 34455667888999999999993 23456666666666666554
No 115
>PRK09903 putative transporter YfdV; Provisional
Probab=28.83 E-value=4.8e+02 Score=24.29 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=21.2
Q ss_pred hHHHHhhhHHHhhHhhhcCCHHHHHHh
Q 043481 85 DLFFLYLLPPIIFNAGFQVKKKQFFKN 111 (351)
Q Consensus 85 ~~~~~i~L~~ilF~~gl~l~~~~l~~~ 111 (351)
+.+.+...|.-++..|..++.+.++++
T Consensus 201 ~~lg~~~~PlaL~~iG~~L~~~~~~~~ 227 (314)
T PRK09903 201 NLIAKANSGVAVFAAGLTLAAHKFEFS 227 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 467788999999999998876665544
No 116
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=26.10 E-value=2e+02 Score=27.97 Aligned_cols=43 Identities=12% Similarity=0.086 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc------ccccchhhHHHHHHHHHHHH
Q 043481 306 HAFATISFIAETFIFLYVFMDAL------DIDKWKASNARNIFAVSSTM 348 (351)
Q Consensus 306 ~~~~~~~~~~~~~~Fv~vG~~~~------~~~~~~~~~~~~~~~~~~~~ 348 (351)
...+-+...+..+||..+|+++. ...+++....-++.++.+.+
T Consensus 51 ~l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~ 99 (373)
T TIGR00773 51 SLLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMI 99 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchH
Confidence 34445667888999999999993 23456666666666665543
No 117
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=23.49 E-value=2.2e+02 Score=27.07 Aligned_cols=91 Identities=20% Similarity=0.230 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHH-------------------HH-----HHHHHHHHHH
Q 043481 259 MMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRI-------------------TT-----KHAFATISFI 314 (351)
Q Consensus 259 ~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~-------------------~~-----~~~~~~~~~~ 314 (351)
-+..++..-.+|+.++.|+.++=.++|+..+.....-..+++-. +. .+.|..=.-+
T Consensus 14 gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk~iAipgAl 93 (408)
T COG4651 14 GLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPGAL 93 (408)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHhcchHH
Confidence 44556666778888889999999999998885433211111100 01 1122222334
Q ss_pred HHHHHHHHhhhhccccccchhh---HHHHHHHHHHHHh
Q 043481 315 AETFIFLYVFMDALDIDKWKAS---NARNIFAVSSTMF 349 (351)
Q Consensus 315 ~~~~~Fv~vG~~~~~~~~~~~~---~~~~~~~~~~~~i 349 (351)
.....=.+.|+-+.+...|++. ..|+.+++++.++
T Consensus 94 ~qia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTVv 131 (408)
T COG4651 94 AQIALATLLGMGLSSLLGWSFGTGIVFGLALSVASTVV 131 (408)
T ss_pred HHHHHHHHHHhHHHHHcCCCcccceeeeehhhhHHHHH
Confidence 4445555666666565566665 6777777776654
No 118
>PRK01844 hypothetical protein; Provisional
Probab=23.25 E-value=3e+02 Score=19.99 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 043481 224 YFTSTALGIVLGLLSA 239 (351)
Q Consensus 224 ~~~~i~~G~~~G~~~~ 239 (351)
.+.++++|.+.|++.+
T Consensus 10 ~I~~li~G~~~Gff~a 25 (72)
T PRK01844 10 GVVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456677777777553
No 119
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=23.16 E-value=2.8e+02 Score=27.53 Aligned_cols=43 Identities=9% Similarity=-0.065 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc------ccccchhhHHHHHHHHHHHH
Q 043481 306 HAFATISFIAETFIFLYVFMDAL------DIDKWKASNARNIFAVSSTM 348 (351)
Q Consensus 306 ~~~~~~~~~~~~~~Fv~vG~~~~------~~~~~~~~~~~~~~~~~~~~ 348 (351)
...+-+..-+..+||..+|+++. ...+++....-.+.++.+.+
T Consensus 61 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~ 109 (423)
T PRK14853 61 SLGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMI 109 (423)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHH
Confidence 34455677889999999999983 23455555565666666554
No 120
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=22.95 E-value=61 Score=31.45 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc------ccccchhhHHHHHHHHHHHH
Q 043481 307 AFATISFIAETFIFLYVFMDAL------DIDKWKASNARNIFAVSSTM 348 (351)
Q Consensus 307 ~~~~~~~~~~~~~Fv~vG~~~~------~~~~~~~~~~~~~~~~~~~~ 348 (351)
..+-+..-+..+||..+|.++. +..+++......+.++.+.+
T Consensus 55 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~ 102 (378)
T PF06965_consen 55 LHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGML 102 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcch
Confidence 3455677889999999999993 23456656666666666654
No 121
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=22.89 E-value=1.6e+02 Score=19.55 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=9.4
Q ss_pred HHHHHHhhhHHHHHHH
Q 043481 105 KKQFFKNFTTMLLFGI 120 (351)
Q Consensus 105 ~~~l~~~~~~i~~la~ 120 (351)
+++++||+..++.+.+
T Consensus 9 ~~~f~~nk~a~~gl~i 24 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLII 24 (56)
T ss_pred HHHHHhCchHHHHHHH
Confidence 5677777665544443
No 122
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.88 E-value=80 Score=25.59 Aligned_cols=18 Identities=17% Similarity=0.510 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043481 226 TSTALGIVLGLLSAYIIK 243 (351)
Q Consensus 226 ~~i~~G~~~G~~~~~~~~ 243 (351)
.++++|+++|+++.+...
T Consensus 4 i~lvvG~iiG~~~~r~~~ 21 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTS 21 (128)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 445666666666555544
No 123
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=21.72 E-value=6.9e+02 Score=23.65 Aligned_cols=102 Identities=16% Similarity=0.073 Sum_probs=60.7
Q ss_pred hhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHh
Q 043481 91 LLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVL 170 (351)
Q Consensus 91 ~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il 170 (351)
.+...+|-.|-++|.|.-.+..++-..+-..=+.+. ..+++....+++ .+++-=...+.+=+.++.|+...-.++.
T Consensus 50 il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~-~~~g~~~~~~~g---~~g~~Gls~laiiaa~~~~Ng~ly~al~ 125 (312)
T PRK12460 50 LLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVA-IVIGLLVGKFFG---AEGIFGLSGLAIVAAMSNSNGGLYAALM 125 (312)
T ss_pred HHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHH-HHHHHHHHHHcC---cccccchHHHHHHHHHhcCcHHHHHHHH
Confidence 355568889999999887777666555443333333 233343333332 2222223455666778889999999999
Q ss_pred ccCCCc-chhHhhhhhhhhhhHHHHHHHH
Q 043481 171 SQDETP-FLYSIVFGEGVVNDATSIVLFN 198 (351)
Q Consensus 171 ~~~~~~-~l~~ll~ges~~nD~~~iil~~ 198 (351)
.|.|.+ +.... +-..+||+=-+.+..
T Consensus 126 ~~yG~~~d~gA~--~~~sl~~GPf~tm~a 152 (312)
T PRK12460 126 GEFGDERDVGAI--SILSLNDGPFFTMLA 152 (312)
T ss_pred HHcCCHhhhhHH--hhhhhccCcHHHHHH
Confidence 999876 33221 124577764444333
No 124
>cd03381 PAP2_glucose_6_phosphatase PAP2_like proteins, glucose-6-phosphatase subfamily. Glucose-6-phosphatase converts glucose-6-phosphate into free glucose and is active in the lumen of the endoplasmic reticulum, where it is bound to the membrane. The generation of free glucose is an important control point in metabolism, and stands at the end of gluconeogenesis and the release of glucose from glycogen. Deficiency of glucose-6-phosphatase leads to von Gierke's disease.
Probab=21.56 E-value=1.7e+02 Score=26.41 Aligned_cols=63 Identities=11% Similarity=-0.058 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHH
Q 043481 219 TFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTI 281 (351)
Q Consensus 219 ~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~ 281 (351)
++..++++|..+|++++............+++.......+....+...|.+=..+|.+..=++
T Consensus 131 HfpsDVlaG~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~y~~~~~~gvd~~ws~ 193 (235)
T cd03381 131 HFPHQVIAGVISGIAVAETFSHIRYIYSASLKRYVLITFFLFGFALGFYLLLKWLGVDLLWSL 193 (235)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhH
Confidence 344566667777777666554432111111111112334444566777777777887765554
No 125
>PRK10711 hypothetical protein; Provisional
Probab=21.09 E-value=6.2e+02 Score=22.84 Aligned_cols=104 Identities=11% Similarity=0.076 Sum_probs=53.9
Q ss_pred HHHHhccCCCcchhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 166 TLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTL 245 (351)
Q Consensus 166 v~~il~~~~~~~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~ 245 (351)
...++.-.+.| -.+--+|.+.+|.-++-........+.++ .+.+.+-...+..++.+|.+++....+...+.
T Consensus 41 ii~~L~~~~i~-Y~~Y~~g~~~l~~lLgPAtVALAvPLY~q-------~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~ 112 (231)
T PRK10711 41 IIPFLLLTGIP-YEHYFKGSEVLNDLLQPAVVALAFPLYEQ-------LHQIRARWKSIISICFIGSVVAMVTGTAVALW 112 (231)
T ss_pred HHHHHHHhCCC-HHHHHhccHHHHhhhhHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443 12224456666665555444444433221 12455556667777788888888777777655
Q ss_pred HHhccCCCcchHHH-----HHHHHHHHHHHHhcCcchHHHHH
Q 043481 246 YFLRHSTDREGAPM-----MLMAYLSCILAELLNLSGILTIF 282 (351)
Q Consensus 246 ~~~~~~~~~~~~l~-----l~~~~~~~~~ae~~g~Sgila~~ 282 (351)
. .-++ +...+ ...+ .+-.++|.+|+.+-++++
T Consensus 113 l--g~~~--~~~~Sl~pkSVTtP-IAm~is~~iGG~~sLta~ 149 (231)
T PRK10711 113 M--GATP--EIAASILPKSVTTP-IAMAVGGSIGGIPAISAV 149 (231)
T ss_pred H--CcCH--HHHHHHhhhhhhHH-HHHHHHHHhCCcHHHHHH
Confidence 3 1111 22221 1222 333577888877666544
No 126
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=20.64 E-value=4.6e+02 Score=24.65 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHH----hcCcchHHHHHHHHHHhhh
Q 043481 257 APMMLMAYLSCILAE----LLNLSGILTIFFCGIIMSH 290 (351)
Q Consensus 257 ~l~l~~~~~~~~~ae----~~g~Sgila~~v~Gl~~~~ 290 (351)
.+++.++..++++++ ..+.++.+-+.+.|+.++|
T Consensus 4 ~l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n 41 (305)
T PF03601_consen 4 LLCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGN 41 (305)
T ss_pred HHHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhh
Confidence 456777888888887 3688999999999999998
No 127
>PRK15081 glutathione ABC transporter permease GsiC; Provisional
Probab=20.64 E-value=7e+02 Score=23.30 Aligned_cols=18 Identities=6% Similarity=-0.027 Sum_probs=9.9
Q ss_pred hhHhhhhhhhhhhHHHHH
Q 043481 178 LYSIVFGEGVVNDATSIV 195 (351)
Q Consensus 178 l~~ll~ges~~nD~~~ii 195 (351)
..+-+..|-++||..-.=
T Consensus 47 ~~~~~~~~~Gld~p~~~q 64 (306)
T PRK15081 47 VVALVRQQLGLDQPLPHQ 64 (306)
T ss_pred HHHHHHHHhCCCCCHHHH
Confidence 334455566677765543
No 128
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=20.54 E-value=7.5e+02 Score=23.56 Aligned_cols=54 Identities=24% Similarity=0.295 Sum_probs=34.9
Q ss_pred hHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043481 85 DLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFK 139 (351)
Q Consensus 85 ~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~ 139 (351)
+.+.+..+|..++.-=++.|.|++.|..++.+..=+ -..++.++...+.|..++
T Consensus 59 ~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifl-i~sv~~vlGfIl~yp~~k 112 (384)
T COG5505 59 DTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFL-ISSVGTVLGFILAYPLLK 112 (384)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHH-HHHHHHHHHHHHHHHHHh
Confidence 457777888888888899999999999888654322 223333333344454443
No 129
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=20.33 E-value=2.9e+02 Score=19.56 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH
Q 043481 225 FTSTALGIVLGLLS 238 (351)
Q Consensus 225 ~~~i~~G~~~G~~~ 238 (351)
+.++++|.+.|++.
T Consensus 4 ilali~G~~~Gff~ 17 (64)
T PF03672_consen 4 ILALIVGAVIGFFI 17 (64)
T ss_pred HHHHHHHHHHHHHH
Confidence 34556677777654
No 130
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=20.28 E-value=3.2e+02 Score=25.05 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccc---cHHHHHHHhccCCCcchhHhhhhhhhhhhHHHHH
Q 043481 119 GICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSAT---DSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIV 195 (351)
Q Consensus 119 a~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaT---dp~~v~~il~~~~~~~l~~ll~ges~~nD~~~ii 195 (351)
++.|-.+++...+...+++- .+++.++++.|-++... .-.+.+++-|+.|+|+-++++.|-.++=|=+--.
T Consensus 214 Gl~GGilt~~~~~~~l~~lT------p~~~lqa~~~~~~I~l~GF~GdlvmSaiKRd~gvKD~G~li~GHGGiLDR~DSL 287 (303)
T COG4589 214 GLIGGILTTMIASAILGLLT------PLNTLQALLAGLLIGLSGFCGDLVMSAIKRDVGVKDSGKLLPGHGGILDRVDSL 287 (303)
T ss_pred HHhhhHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccCCCCccHHHHHHHH
Confidence 56666677776766666553 67888888887555432 2234446666788988999999999888776655
Q ss_pred HHH
Q 043481 196 LFN 198 (351)
Q Consensus 196 l~~ 198 (351)
.|.
T Consensus 288 ~Ft 290 (303)
T COG4589 288 IFT 290 (303)
T ss_pred HHh
Confidence 554
No 131
>TIGR02454 CbiQ_TIGR cobalt ABC transporter, permease protein CbiQ. This model represents the permease component of the cobalt-specific ABC transporter. This model finds permeases which are generally next to the other subunits of the complex (CbiN and CbiO) or the cobalamin biosynthesis protein CbiM which is a transmembrane protein which likely interacts with the complex in some manner. In genomes which possess all of these subunits the ATPase is most likely running in the direction of import (for the biosynthesis of coenzyme B12). In other genomes, this subunit may be involved in the export of cobalt and/or other closely related heavy metals.
Probab=20.11 E-value=5.5e+02 Score=21.82 Aligned_cols=19 Identities=21% Similarity=0.048 Sum_probs=14.8
Q ss_pred cccccHHHHHHHhccCCCc
Q 043481 158 LSATDSVCTLQVLSQDETP 176 (351)
Q Consensus 158 lsaTdp~~v~~il~~~~~~ 176 (351)
...|+|.-....+++.|.|
T Consensus 111 ~~TT~~~~l~~~l~~l~~P 129 (198)
T TIGR02454 111 ALTTPFPELLSALRRLGVP 129 (198)
T ss_pred HHcCCHHHHHHHHHHcCCC
Confidence 3568888888888888877
Done!