Query 043481
Match_columns 351
No_of_seqs 151 out of 1429
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 09:04:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.1 8.8E-10 3E-14 104.8 15.0 207 85-329 61-278 (388)
2 2l0e_A Sodium/hydrogen exchang 98.3 4.1E-08 1.4E-12 59.1 -1.8 31 147-177 2-32 (33)
3 2htg_A NHE-1, NHE1 isoform of 97.7 2.8E-06 9.5E-11 48.6 -1.2 22 177-198 5-26 (28)
4 2k3c_A TMIX peptide; membrane 97.1 3.5E-06 1.2E-10 50.7 -5.8 31 262-292 2-32 (33)
5 3zux_A Transporter, ASBTNM; tr 95.9 0.69 2.4E-05 42.8 18.8 146 87-242 44-189 (332)
6 1y4e_A Sodium/hydrogen exchang 93.4 0.0077 2.6E-07 34.0 -1.1 25 82-106 2-26 (27)
7 2q67_A Potassium channel prote 24.5 1.8E+02 0.0061 21.6 6.1 27 127-158 34-60 (114)
8 3vou_A ION transport 2 domain 17.9 2.4E+02 0.0082 21.9 5.9 15 145-159 50-64 (148)
9 2zy9_A Mg2+ transporter MGTE; 16.6 2.5E+02 0.0085 26.6 6.6 15 186-200 451-465 (473)
10 2l8s_A Integrin alpha-1; trans 12.4 3.1E+02 0.011 17.7 5.0 24 224-247 12-35 (54)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.12 E-value=8.8e-10 Score=104.80 Aligned_cols=207 Identities=14% Similarity=0.115 Sum_probs=140.8
Q ss_pred hHHHHhhhHHHhhHhhhcCCHHHH----HHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhc
Q 043481 85 DLFFLYLLPPIIFNAGFQVKKKQF----FKNFT--TMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAIL 158 (351)
Q Consensus 85 ~~~~~i~L~~ilF~~gl~l~~~~l----~~~~~--~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGail 158 (351)
+.+-+-.+.+.+|..|+|+|.+.+ |+.++ .....+..|+++++.+ |+.+ +.+.+.+.--+++.
T Consensus 61 ~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y~~~------~~~~~~~~~gw~ip 129 (388)
T 1zcd_A 61 LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----YLAF------NYADPITREGWAIP 129 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG------CCSSTTHHHHTSSS
T ss_pred HHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----HHHH------hcCChhhhhhhHHH
Confidence 456667888899999999998877 55544 3566788888877644 4444 45555677888999
Q ss_pred ccccHHHHHHHhccCC--Cc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 159 SATDSVCTLQVLSQDE--TP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLG 235 (351)
Q Consensus 159 saTdp~~v~~il~~~~--~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G 235 (351)
++||.+.+..++...+ .| .++..+.+.+.+||..++++..++.. ++.+. ..... .+..
T Consensus 130 ~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~~~---~~l~~-------------~~~~ 190 (388)
T 1zcd_A 130 AATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---NDLSM---ASLGV-------------AAVA 190 (388)
T ss_dssp SCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCCCH---HHHHH-------------HHHH
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CCccH---HHHHH-------------HHHH
Confidence 9999999999998865 45 58899999999999999999988854 22221 11110 0111
Q ss_pred HHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHH-HH
Q 043481 236 LLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATIS-FI 314 (351)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 314 (351)
....+..+| ++.+...... ......++.+|..|.++.+|.+++|+++.+..+++ ++..++.++-.+.+. ++
T Consensus 191 ~~~~~~l~r----~~v~~~~~y~--~lgl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~--~~~~~~le~~l~p~v~~~ 262 (388)
T 1zcd_A 191 IAVLAVLNL----CGARRTGVYI--LVGVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHG--RSPAKRLEHVLHPWVAYL 262 (388)
T ss_dssp HHHHHHHHH----TTCCCTHHHH--HHHHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGS--SCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH----hcchhHHHHH--HHHHHHHHHHHHhCccHHHHHHHHHHhccCCCccC--CCHHHHHHHHHHHHHHHH
Confidence 111122332 2222222233 22346678889999999999999999999753322 122445556566554 58
Q ss_pred HHHHH-HHHhhhhccc
Q 043481 315 AETFI-FLYVFMDALD 329 (351)
Q Consensus 315 ~~~~~-Fv~vG~~~~~ 329 (351)
+.|+| |...|..+..
T Consensus 263 ilPlFaFanaGv~l~~ 278 (388)
T 1zcd_A 263 ILPLFAFANAGVSLQG 278 (388)
T ss_dssp HHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHhcCeeecc
Confidence 89999 9999999854
No 2
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=98.27 E-value=4.1e-08 Score=59.09 Aligned_cols=31 Identities=32% Similarity=0.426 Sum_probs=27.7
Q ss_pred CHHHHHHhhhhcccccHHHHHHHhccCCCcc
Q 043481 147 RIQDFLAIGAILSATDSVCTLQVLSQDETPF 177 (351)
Q Consensus 147 ~~~~alllGailsaTdp~~v~~il~~~~~~~ 177 (351)
+|..++++|+++|+|||+++.+++|+.+.|+
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~vp~ 32 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHKKK 32 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCCCC
Confidence 4556899999999999999999999998775
No 3
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=97.68 E-value=2.8e-06 Score=48.61 Aligned_cols=22 Identities=45% Similarity=0.881 Sum_probs=20.5
Q ss_pred chhHhhhhhhhhhhHHHHHHHH
Q 043481 177 FLYSIVFGEGVVNDATSIVLFN 198 (351)
Q Consensus 177 ~l~~ll~ges~~nD~~~iil~~ 198 (351)
|+..+++|||++||++++++|.
T Consensus 5 ~L~~lvfGESllNDavaiVlf~ 26 (28)
T 2htg_A 5 LLHILVFGESLLNDAVTVVLYK 26 (28)
T ss_dssp TTHHHHTTTTTTTTTTTTTTTT
T ss_pred eEEEEEEeeeeecccEEEEEEe
Confidence 7999999999999999998875
No 4
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=97.11 E-value=3.5e-06 Score=50.72 Aligned_cols=31 Identities=32% Similarity=0.650 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHhhhcc
Q 043481 262 MAYLSCILAELLNLSGILTIFFCGIIMSHYT 292 (351)
Q Consensus 262 ~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~ 292 (351)
.+|.+|..||.+|+||++|+++||+.++++.
T Consensus 2 ~~y~~Yl~AE~~~lSGIlavv~~Gi~~~~y~ 32 (33)
T 2k3c_A 2 KSYMAYLSAELFHLSGIMALIASGVVMRPKK 32 (33)
T ss_dssp CCSTTTGGGSSSTTTTTTTTTTTTSCCCCCC
T ss_pred hhHHHHHHHHHhCcChHHHHHHHHHHHhhcc
Confidence 3678899999999999999999999998763
No 5
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=95.94 E-value=0.69 Score=42.78 Aligned_cols=146 Identities=20% Similarity=0.222 Sum_probs=67.1
Q ss_pred HHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHH
Q 043481 87 FFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCT 166 (351)
Q Consensus 87 ~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v 166 (351)
.....++.++|..|.++|.+++++..++.-... .+......+.-..++.+...++. +-+...++++-++.-+++-+.+
T Consensus 44 ~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~-~~l~~~~vi~Pll~~~l~~~~~l-~~~~~~Glil~~~~P~~~~s~v 121 (332)
T 3zux_A 44 YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVI-IGVIAQFAIMPATAWCLSKLLNL-PAEIAVGVILVGCCPGGTASNV 121 (332)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHH-HHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHSCCCTHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHHHHHHHhCC-ChHHHHHHHHHhcCCchhHHHH
Confidence 456788999999999999999995443322111 12233343333333333322332 1123333444344433333333
Q ss_pred HHHhccCCCcchhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 167 LQVLSQDETPFLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYII 242 (351)
Q Consensus 167 ~~il~~~~~~~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~ 242 (351)
..-+-+ |.... -.....+|+..+++..=....+..++....+......+ +..-+++=.+.|.+.++..
T Consensus 122 ~t~~a~-Gd~~l---a~~~~~~stll~~~~~Pl~~~l~~g~~~~v~~~~~~~~----l~~~vllP~~lG~l~r~~~ 189 (332)
T 3zux_A 122 MTYLAR-GNVAL---SVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMS----IVKMVLLPIVLGLIVHKVL 189 (332)
T ss_dssp HHHHTT-CCHHH---HHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH----HHHHTHHHHHHHHHHHHHH
T ss_pred HHHHhC-CCHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCccCCCHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 222222 23222 22345677777776655444333222122233333333 3333344445555554443
No 6
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=93.38 E-value=0.0077 Score=33.98 Aligned_cols=25 Identities=48% Similarity=1.081 Sum_probs=21.4
Q ss_pred cChhHHHHhhhHHHhhHhhhcCCHH
Q 043481 82 FNEDLFFLYLLPPIIFNAGFQVKKK 106 (351)
Q Consensus 82 ~~~~~~~~i~L~~ilF~~gl~l~~~ 106 (351)
++++.+....||+|+|++|+.++.+
T Consensus 2 ~~~~~FF~~LLPPII~~aGy~l~~r 26 (27)
T 1y4e_A 2 LQSDVFFLFLLPPIILDAGYFLPLR 26 (27)
T ss_dssp CCSCSSHHHHSCCSSHHHHTTGGGG
T ss_pred CccceeeeeccCccEeeccccccCC
Confidence 4677899999999999999998754
No 7
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=24.52 E-value=1.8e+02 Score=21.63 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhc
Q 043481 127 FYLISVGAFSIFKKMGMTSLRIQDFLAIGAIL 158 (351)
Q Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~alllGail 158 (351)
....+...+...+ ++++.+|+-+..+-
T Consensus 34 ~~~~g~~~~~~~e-----~~~~~~a~y~~~~T 60 (114)
T 2q67_A 34 TLISGTIFYSTVE-----GLRPIDALYFSVVT 60 (114)
T ss_dssp HHHHHHHHHHHHS-----CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CCCHHHHHHHHHHH
Confidence 3444444454432 78999998887643
No 8
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=17.94 E-value=2.4e+02 Score=21.86 Aligned_cols=15 Identities=27% Similarity=0.231 Sum_probs=11.6
Q ss_pred CCCHHHHHHhhhhcc
Q 043481 145 SLRIQDFLAIGAILS 159 (351)
Q Consensus 145 ~~~~~~alllGails 159 (351)
++++.+|+.+..+..
T Consensus 50 ~~~~~~a~y~~~~t~ 64 (148)
T 3vou_A 50 GLRPLDALYFSVVTL 64 (148)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 789999988876543
No 9
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=16.58 E-value=2.5e+02 Score=26.63 Aligned_cols=15 Identities=13% Similarity=0.547 Sum_probs=11.1
Q ss_pred hhhhhHHHHHHHHHH
Q 043481 186 GVVNDATSIVLFNAI 200 (351)
Q Consensus 186 s~~nD~~~iil~~~~ 200 (351)
+-++|.+++..|..+
T Consensus 451 tt~~D~~g~~~~~~~ 465 (473)
T 2zy9_A 451 ATLSDVTGLLIYLSV 465 (473)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 458999998877543
No 10
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=12.42 E-value=3.1e+02 Score=17.74 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 224 YFTSTALGIVLGLLSAYIIKTLYF 247 (351)
Q Consensus 224 ~~~~i~~G~~~G~~~~~~~~~~~~ 247 (351)
++.|++.|+++=.+..+.+.++.+
T Consensus 12 Ii~svl~GLLLL~Lii~~LwK~GF 35 (54)
T 2l8s_A 12 ILLSAFAGLLLLMLLILALWKIGF 35 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCc
Confidence 445555665555555555555443
Done!