Query 043481
Match_columns 351
No_of_seqs 151 out of 1429
Neff 8.3
Searched_HMMs 13730
Date Mon Mar 25 09:04:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043481.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043481hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 57.4 28 0.002 26.7 8.8 22 50-71 10-31 (173)
2 d2nwwa1 f.49.1.1 (A:12-416) Pr 20.6 1.3E+02 0.0098 25.5 8.0 77 52-128 3-87 (405)
3 d2e74e1 f.23.24.1 (E:1-32) Pet 13.7 89 0.0065 15.9 4.1 19 220-238 6-24 (32)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 13.1 3.6E+02 0.026 22.6 9.0 51 228-290 283-333 (383)
5 d1q90r_ f.23.12.1 (R:) ISP sub 7.6 2E+02 0.014 15.9 4.2 23 109-131 9-31 (39)
6 d2nr9a1 f.51.1.1 (A:4-192) Glp 6.6 1.5E+02 0.011 21.9 3.1 16 231-246 169-184 (189)
7 d1r3jc_ f.14.1.1 (C:) Potassiu 5.4 4E+02 0.029 17.2 6.5 29 218-246 70-98 (103)
8 d2e74g1 f.23.26.1 (G:9-35) Pet 5.2 1.6E+02 0.011 14.5 1.4 17 277-293 4-20 (27)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 5.0 1.9E+02 0.014 15.5 1.8 14 277-290 20-33 (37)
10 d3d31c1 f.58.1.1 (C:13-260) Su 2.9 4.2E+02 0.03 19.8 3.2 40 211-250 43-82 (248)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=57.44 E-value=28 Score=26.67 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=14.9
Q ss_pred ccchHHHHHHHHHHHHHHHHhh
Q 043481 50 WANESITALLLGLCAGGVVLLA 71 (351)
Q Consensus 50 ~iP~~~~~ll~GillG~~~~~~ 71 (351)
|+|=....++.|.+-+......
T Consensus 10 RlpWL~i~l~~~~~~a~ii~~F 31 (173)
T d2yvxa3 10 RVRWLVILILTGMVTSSILQGF 31 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777777777777655443
No 2
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.64 E-value=1.3e+02 Score=25.52 Aligned_cols=77 Identities=12% Similarity=0.186 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHHHHHHHhhccCCC-ccccccChhHHHH----hhhHHHhhHh--hh-cCCHHHHHHhhhHHHHHHHHHH
Q 043481 52 NESITALLLGLCAGGVVLLASKDRS-SHLLVFNEDLFFL----YLLPPIIFNA--GF-QVKKKQFFKNFTTMLLFGICGT 123 (351)
Q Consensus 52 P~~~~~ll~GillG~~~~~~~~~~~-~~~~~~~~~~~~~----i~L~~ilF~~--gl-~l~~~~l~~~~~~i~~la~~g~ 123 (351)
.+.+.-++.|+++|.......+.+. ....+.-.|.+.+ +.+|++.+.. |. +++.++.+|...+.+.+-...+
T Consensus 3 ~rili~lv~Gi~~G~~~~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt 82 (405)
T d2nwwa1 3 QKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTS 82 (405)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHH
Confidence 4466677888888876543211100 0112212233332 4455554443 33 5555567777666666555555
Q ss_pred HHHHH
Q 043481 124 VISFY 128 (351)
Q Consensus 124 ~~~~~ 128 (351)
.++..
T Consensus 83 ~iA~~ 87 (405)
T d2nwwa1 83 AFAVT 87 (405)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 3
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.68 E-value=89 Score=15.90 Aligned_cols=19 Identities=26% Similarity=0.691 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043481 220 FLYLYFTSTALGIVLGLLS 238 (351)
Q Consensus 220 ~l~~~~~~i~~G~~~G~~~ 238 (351)
..+..+.+...|+.+|.+.
T Consensus 6 vfyivfialffgiavgiif 24 (32)
T d2e74e1 6 VFYIVFIALFFGIAVGIIF 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHhhhee
Confidence 3344455556666666553
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=13.08 E-value=3.6e+02 Score=22.60 Aligned_cols=51 Identities=22% Similarity=0.286 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhh
Q 043481 228 TALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSH 290 (351)
Q Consensus 228 i~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~ 290 (351)
+++|.+.|.+..+..+.++++.|.+|.--.+. .=+..|+++....|+.-++
T Consensus 283 ~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~------------vHg~~Gi~G~l~~glfa~~ 333 (383)
T d1u7ga_ 283 LIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFG------------VHGVCGIVGCIMTGIFAAS 333 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHH------------HHHHHHHHHHHHHHHHTSG
T ss_pred HHHHhhccHHHHHHHHHHHhhcccccccceEe------------ehhhhHHHHHHHHHHhcCc
Confidence 45566666655555444432224444322111 1235688999999988654
No 5
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.62 E-value=2e+02 Score=15.89 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=12.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHH
Q 043481 109 FKNFTTMLLFGICGTVISFYLIS 131 (351)
Q Consensus 109 ~~~~~~i~~la~~g~~~~~~~~~ 131 (351)
||+....+.++........+...
T Consensus 9 rR~~MNLll~G~~~~~~~g~l~p 31 (39)
T d1q90r_ 9 KRNIMNLILAGGAGLPITTLALG 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhhhhhccc
Confidence 56666666666555444444333
No 6
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=6.60 E-value=1.5e+02 Score=21.92 Aligned_cols=16 Identities=31% Similarity=0.679 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 043481 231 GIVLGLLSAYIIKTLY 246 (351)
Q Consensus 231 G~~~G~~~~~~~~~~~ 246 (351)
|.+.|.+.+++.++.+
T Consensus 169 G~l~G~~~g~~~~~~~ 184 (189)
T d2nr9a1 169 GLIVGLIWGFIDSKLR 184 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccc
Confidence 4555555555555543
No 7
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.43 E-value=4e+02 Score=17.23 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481 218 GTFLYLYFTSTALGIVLGLLSAYIIKTLY 246 (351)
Q Consensus 218 ~~~l~~~~~~i~~G~~~G~~~~~~~~~~~ 246 (351)
...+..+.+-...+...+.+..+..++-.
T Consensus 70 ~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 98 (103)
T d1r3jc_ 70 VAVVVMVAGITSFGLVTAALATWFVGREQ 98 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666777888888777766543
No 8
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.15 E-value=1.6e+02 Score=14.50 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHhhhccc
Q 043481 277 GILTIFFCGIIMSHYTW 293 (351)
Q Consensus 277 gila~~v~Gl~~~~~~~ 293 (351)
|++-+..+|+..+.|..
T Consensus 4 gli~~tl~glf~aayqq 20 (27)
T d2e74g1 4 GLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHH
Confidence 45566677888776654
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.95 E-value=1.9e+02 Score=15.45 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHhhh
Q 043481 277 GILTIFFCGIIMSH 290 (351)
Q Consensus 277 gila~~v~Gl~~~~ 290 (351)
|++-+|+.|+.+++
T Consensus 20 GlLlifvl~vLFss 33 (37)
T d2axtl1 20 GLLLILVLALLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555554
No 10
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=2.88 E-value=4.2e+02 Score=19.81 Aligned_cols=40 Identities=25% Similarity=0.371 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 043481 211 TVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRH 250 (351)
Q Consensus 211 ~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~~~ 250 (351)
.+..+.+...+...+.+..++.++|...++...+.+++.+
T Consensus 43 ~~~~~~l~~Sl~~a~~s~~i~~~lg~~~a~~~~~~~~~~~ 82 (248)
T d3d31c1 43 RSVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGK 82 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Done!