BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043483
         (140 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PL5|A Chain A, Crystal Structure Of Homoserine O-acetyltransferase From
           Leptospira Interrogans
          Length = 366

 Score = 29.3 bits (64), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 19  ALTLLIVHVASATNISIHVAASEIERQALLNSGWWKDRIPHNTSDHCGWVGITCDYEGRI 78
           +L+  IV  ++A + ++ +A +E+ RQA+L+   WK+ +    S   G         G I
Sbjct: 169 SLSNCIVMASTAEHSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLA--LARMVGHI 226

Query: 79  TDIGLAESKIKGELGR 94
           T   L++ K++ + GR
Sbjct: 227 TY--LSDDKMREKFGR 240


>pdb|4H9D|A Chain A, Crystal Structure Of Mn-Dependent Gme Hnh Nicking
          Endonuclease From Geobacter Metallireducens Gs-15,
          Northeast Structural Genomics Consortium (Nesg) Target
          Gmr87
 pdb|4H9D|B Chain B, Crystal Structure Of Mn-Dependent Gme Hnh Nicking
          Endonuclease From Geobacter Metallireducens Gs-15,
          Northeast Structural Genomics Consortium (Nesg) Target
          Gmr87
 pdb|4H9D|C Chain C, Crystal Structure Of Mn-Dependent Gme Hnh Nicking
          Endonuclease From Geobacter Metallireducens Gs-15,
          Northeast Structural Genomics Consortium (Nesg) Target
          Gmr87
          Length = 112

 Score = 26.9 bits (58), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 5/37 (13%)

Query: 35 IHVAASEIERQA-----LLNSGWWKDRIPHNTSDHCG 66
          + V+  E++R+      L  S WWK+RI      +CG
Sbjct: 6  VEVSEQEVKREKEKARELRRSQWWKNRIARGICHYCG 42


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,344,031
Number of Sequences: 62578
Number of extensions: 102751
Number of successful extensions: 194
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 4
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)