Query 043483
Match_columns 140
No_of_seqs 173 out of 1636
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:32:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043483.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043483hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.7 4.5E-16 9.7E-21 135.1 10.2 105 33-139 27-132 (968)
2 PLN03150 hypothetical protein; 99.5 2E-13 4.4E-18 114.4 9.1 103 31-139 368-480 (623)
3 PF13855 LRR_8: Leucine rich r 98.9 2E-09 4.2E-14 64.0 4.4 60 77-137 2-61 (61)
4 PLN03150 hypothetical protein; 98.9 2.8E-09 6.1E-14 89.6 5.2 64 76-140 442-505 (623)
5 PF08263 LRRNT_2: Leucine rich 98.6 2.3E-08 4.9E-13 55.5 2.2 39 35-73 3-43 (43)
6 PF12799 LRR_4: Leucine Rich r 98.6 1E-07 2.2E-12 53.2 3.7 37 101-138 1-37 (44)
7 PLN00113 leucine-rich repeat r 98.5 1.6E-07 3.4E-12 82.1 4.8 61 78-139 501-561 (968)
8 KOG4237 Extracellular matrix p 97.8 1.2E-05 2.6E-10 64.1 2.2 62 76-138 67-129 (498)
9 PF13855 LRR_8: Leucine rich r 97.7 1.8E-05 4E-10 46.6 1.9 38 101-138 1-38 (61)
10 PF14580 LRR_9: Leucine-rich r 97.7 3.2E-05 6.9E-10 55.5 3.3 59 76-138 42-101 (175)
11 KOG0617 Ras suppressor protein 97.6 8.9E-06 1.9E-10 58.7 -0.5 57 79-138 59-115 (264)
12 PF12799 LRR_4: Leucine Rich r 97.5 9.7E-05 2.1E-09 41.0 3.0 40 77-119 2-41 (44)
13 KOG0617 Ras suppressor protein 97.5 1.1E-05 2.4E-10 58.3 -1.3 61 75-138 32-92 (264)
14 PRK15387 E3 ubiquitin-protein 97.4 0.00015 3.2E-09 62.8 3.2 39 101-140 422-460 (788)
15 PF14580 LRR_9: Leucine-rich r 97.3 0.00016 3.5E-09 51.9 2.8 58 76-138 19-77 (175)
16 KOG0472 Leucine-rich repeat pr 97.3 7.6E-05 1.7E-09 59.9 1.1 80 57-139 425-542 (565)
17 KOG4194 Membrane glycoprotein 97.2 0.00015 3.3E-09 60.7 1.8 61 77-138 270-330 (873)
18 PF00560 LRR_1: Leucine Rich R 97.2 0.00019 4.1E-09 33.9 1.3 22 102-124 1-22 (22)
19 KOG0444 Cytoskeletal regulator 97.2 7.8E-05 1.7E-09 63.0 -0.3 60 77-138 127-186 (1255)
20 KOG4579 Leucine-rich repeat (L 97.1 9.5E-05 2.1E-09 51.5 -0.4 62 75-138 52-113 (177)
21 KOG0472 Leucine-rich repeat pr 97.0 0.0003 6.6E-09 56.6 1.2 62 72-137 248-309 (565)
22 KOG1259 Nischarin, modulator o 96.9 0.00038 8.2E-09 54.3 1.0 57 78-138 286-342 (490)
23 KOG0444 Cytoskeletal regulator 96.8 8E-05 1.7E-09 63.0 -3.5 60 77-138 269-329 (1255)
24 cd00116 LRR_RI Leucine-rich re 96.7 0.0011 2.4E-08 50.6 2.3 38 101-138 193-234 (319)
25 PRK15370 E3 ubiquitin-protein 96.6 0.02 4.4E-07 49.7 9.3 42 27-68 55-98 (754)
26 cd00116 LRR_RI Leucine-rich re 96.5 0.0012 2.6E-08 50.4 1.6 62 77-139 109-179 (319)
27 KOG4237 Extracellular matrix p 96.5 0.00099 2.1E-08 53.5 0.9 61 76-137 274-334 (498)
28 KOG0618 Serine/threonine phosp 96.5 0.0003 6.4E-09 61.3 -2.1 37 77-114 384-420 (1081)
29 KOG4194 Membrane glycoprotein 96.4 0.0022 4.7E-08 54.0 2.5 60 77-138 174-234 (873)
30 COG4886 Leucine-rich repeat (L 96.4 0.0013 2.8E-08 52.2 1.1 58 77-137 117-175 (394)
31 PLN03210 Resistant to P. syrin 96.4 0.0067 1.4E-07 54.9 5.6 58 76-135 634-691 (1153)
32 KOG0618 Serine/threonine phosp 96.1 0.00055 1.2E-08 59.7 -2.4 56 78-137 409-464 (1081)
33 KOG4658 Apoptotic ATPase [Sign 96.1 0.0023 5E-08 56.4 1.3 57 77-135 572-628 (889)
34 PRK15387 E3 ubiquitin-protein 96.0 0.0098 2.1E-07 51.8 4.7 15 101-115 302-316 (788)
35 COG4886 Leucine-rich repeat (L 96.0 0.0054 1.2E-07 48.6 2.6 59 77-138 141-199 (394)
36 PRK15370 E3 ubiquitin-protein 95.9 0.012 2.6E-07 51.1 4.5 36 101-139 262-297 (754)
37 PLN03210 Resistant to P. syrin 95.8 0.012 2.7E-07 53.2 4.5 57 77-135 779-835 (1153)
38 KOG4579 Leucine-rich repeat (L 95.1 0.0014 3.1E-08 45.7 -3.1 58 77-137 78-135 (177)
39 KOG0532 Leucine-rich repeat (L 95.1 0.0067 1.4E-07 50.9 0.2 43 96-140 207-249 (722)
40 KOG0532 Leucine-rich repeat (L 94.8 0.0062 1.3E-07 51.0 -0.7 57 77-137 122-178 (722)
41 KOG1644 U2-associated snRNP A' 94.7 0.042 9.2E-07 40.6 3.6 56 78-137 44-100 (233)
42 PF13504 LRR_7: Leucine rich r 94.6 0.024 5.2E-07 24.9 1.4 13 102-114 2-14 (17)
43 KOG2982 Uncharacterized conser 94.5 0.018 3.8E-07 45.1 1.3 73 64-137 83-158 (418)
44 KOG2982 Uncharacterized conser 94.4 0.022 4.8E-07 44.6 1.7 63 76-139 71-135 (418)
45 KOG1259 Nischarin, modulator o 94.2 0.024 5.3E-07 44.5 1.5 36 76-114 307-342 (490)
46 KOG1859 Leucine-rich repeat pr 94.0 0.013 2.8E-07 50.7 -0.4 35 103-139 234-268 (1096)
47 smart00370 LRR Leucine-rich re 93.9 0.053 1.2E-06 26.1 2.0 20 100-120 1-20 (26)
48 smart00369 LRR_TYP Leucine-ric 93.9 0.053 1.2E-06 26.1 2.0 20 100-120 1-20 (26)
49 KOG0531 Protein phosphatase 1, 93.6 0.042 9.2E-07 44.2 1.9 59 76-138 95-153 (414)
50 KOG2739 Leucine-rich acidic nu 93.0 0.064 1.4E-06 40.7 2.0 35 100-136 90-127 (260)
51 KOG4658 Apoptotic ATPase [Sign 92.9 0.054 1.2E-06 47.9 1.6 62 77-138 546-608 (889)
52 KOG0531 Protein phosphatase 1, 92.1 0.067 1.5E-06 43.0 1.1 58 76-138 118-175 (414)
53 PF13516 LRR_6: Leucine Rich r 91.8 0.046 9.9E-07 25.8 -0.1 19 101-119 2-20 (24)
54 KOG1644 U2-associated snRNP A' 91.4 0.25 5.4E-06 36.6 3.3 60 76-137 64-125 (233)
55 KOG1859 Leucine-rich repeat pr 90.9 0.041 8.9E-07 47.7 -1.3 40 97-138 183-222 (1096)
56 KOG2739 Leucine-rich acidic nu 90.7 0.17 3.6E-06 38.5 1.9 42 97-138 61-104 (260)
57 smart00365 LRR_SD22 Leucine-ri 88.9 0.39 8.5E-06 23.4 1.8 13 125-137 2-14 (26)
58 KOG3207 Beta-tubulin folding c 87.4 0.34 7.5E-06 39.7 1.6 61 77-137 247-313 (505)
59 smart00368 LRR_RI Leucine rich 87.1 0.55 1.2E-05 23.1 1.8 14 125-138 2-15 (28)
60 KOG1909 Ran GTPase-activating 87.0 0.19 4.1E-06 39.9 -0.0 40 98-137 89-132 (382)
61 KOG3665 ZYG-1-like serine/thre 86.6 0.33 7.1E-06 42.0 1.2 23 67-89 164-186 (699)
62 COG5238 RNA1 Ran GTPase-activa 85.2 0.86 1.9E-05 35.5 2.8 41 97-137 88-132 (388)
63 KOG3207 Beta-tubulin folding c 83.7 0.36 7.7E-06 39.6 0.1 62 77-138 147-210 (505)
64 KOG0473 Leucine-rich repeat pr 80.6 0.029 6.4E-07 42.5 -6.6 42 96-138 83-124 (326)
65 smart00364 LRR_BAC Leucine-ric 80.5 1.1 2.3E-05 21.9 1.1 13 126-138 3-15 (26)
66 KOG1909 Ran GTPase-activating 79.1 0.77 1.7E-05 36.6 0.5 63 76-138 92-170 (382)
67 KOG0473 Leucine-rich repeat pr 75.3 0.11 2.4E-06 39.5 -4.8 60 76-138 42-101 (326)
68 COG5238 RNA1 Ran GTPase-activa 73.2 5.5 0.00012 31.2 3.7 63 76-138 92-170 (388)
69 KOG2123 Uncharacterized conser 66.2 0.56 1.2E-05 36.6 -2.9 63 72-138 37-101 (388)
70 KOG2120 SCF ubiquitin ligase, 65.8 0.45 9.7E-06 37.5 -3.5 58 77-134 186-243 (419)
71 PF13306 LRR_5: Leucine rich r 61.9 17 0.00037 23.5 4.0 35 96-133 76-111 (129)
72 KOG3665 ZYG-1-like serine/thre 56.0 9.9 0.00021 33.2 2.5 34 97-132 169-202 (699)
73 PF01456 Mucin: Mucin-like gly 51.9 9.8 0.00021 25.9 1.6 22 6-27 1-22 (143)
74 PRK15386 type III secretion pr 51.9 24 0.00052 29.0 3.9 10 102-111 95-104 (426)
75 KOG2120 SCF ubiquitin ligase, 46.9 9.3 0.0002 30.4 0.9 34 97-132 334-370 (419)
76 PF15240 Pro-rich: Proline-ric 45.6 14 0.0003 26.7 1.6 16 19-34 5-20 (179)
77 KOG2123 Uncharacterized conser 45.1 1.2 2.5E-05 34.9 -4.2 57 76-138 19-76 (388)
78 PRK15386 type III secretion pr 43.6 28 0.0006 28.6 3.2 35 102-136 113-167 (426)
79 PF02950 Conotoxin: Conotoxin; 42.7 12 0.00027 22.4 0.8 6 62-67 62-67 (75)
80 smart00367 LRR_CC Leucine-rich 40.6 23 0.00049 16.6 1.4 11 125-135 2-12 (26)
81 COG3915 Uncharacterized protei 37.1 1.1E+02 0.0024 21.3 4.8 71 39-113 38-116 (155)
82 TIGR00864 PCC polycystin catio 36.8 24 0.00052 35.5 2.1 32 82-114 1-32 (2740)
83 PF06716 DUF1201: Protein of u 34.8 59 0.0013 18.1 2.6 6 1-7 1-6 (54)
84 PTZ00459 mucin-associated surf 32.6 33 0.00071 26.6 1.9 19 5-23 3-21 (291)
85 KOG3763 mRNA export factor TAP 31.5 25 0.00055 29.9 1.2 60 76-138 218-283 (585)
86 KOG3763 mRNA export factor TAP 30.0 31 0.00067 29.4 1.5 38 98-135 215-254 (585)
87 PF08116 Toxin_29: PhTx neurot 24.9 44 0.00095 16.7 0.9 12 64-75 2-13 (31)
88 PF06692 MNSV_P7B: Melon necro 22.3 1.7E+02 0.0038 16.9 3.4 17 13-29 17-33 (61)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.66 E-value=4.5e-16 Score=135.11 Aligned_cols=105 Identities=30% Similarity=0.465 Sum_probs=90.7
Q ss_pred cchhhhhhHHHHHHHhcCCCCCCCCCCCCCCCCCccccccCCCCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCc
Q 043483 33 ISIHVAASEIERQALLNSGWWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNN 112 (140)
Q Consensus 33 ~~~~~~~l~~~~~~l~~~~~~~~~~w~~~~~~C~w~gv~C~~~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~ 112 (140)
++.|..++.++++.+.+ +.....+|....++|.|.||+|+..++|+.|+|+++++.|.++. .+..+++|++|++++|.
T Consensus 27 ~~~~~~~l~~~~~~~~~-~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~ 104 (968)
T PLN00113 27 HAEELELLLSFKSSIND-PLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQ 104 (968)
T ss_pred CHHHHHHHHHHHHhCCC-CcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCc
Confidence 33568899999999854 33446789877899999999999888999999999999998866 78999999999999999
Q ss_pred cccccchhhc-CCCCCCEEeCcCCcCcC
Q 043483 113 LSGSILSQIG-SLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 113 l~G~iP~~~~-~l~~L~~L~ls~N~lsG 139 (140)
+.|.+|..+. ++++|++|++++|+++|
T Consensus 105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~ 132 (968)
T PLN00113 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTG 132 (968)
T ss_pred cCCcCChHHhccCCCCCEEECcCCcccc
Confidence 9999998765 89999999999998876
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.47 E-value=2e-13 Score=114.43 Aligned_cols=103 Identities=27% Similarity=0.459 Sum_probs=65.1
Q ss_pred cccchhhhhhHHHHHHHhcCCCCCCCCCCCCCCCC-----CccccccCC---C--CCeeEEecCCCCCccccCCccCCCC
Q 043483 31 TNISIHVAASEIERQALLNSGWWKDRIPHNTSDHC-----GWVGITCDY---E--GRITDIGLAESKIKGELGRLNFSCF 100 (140)
Q Consensus 31 ~~~~~~~~~l~~~~~~l~~~~~~~~~~w~~~~~~C-----~w~gv~C~~---~--~~v~~L~L~~~~l~g~l~~~~l~~l 100 (140)
+..+.|+.++...|+.+.... ..+|. + ++| .|.||.|.. . ..|+.|+|+++.+.|.+|. .+..+
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~---~~~W~-g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~-~i~~L 441 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPL---RFGWN-G-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN-DISKL 441 (623)
T ss_pred ccCchHHHHHHHHHHhcCCcc---cCCCC-C-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH-HHhCC
Confidence 445567888888888875432 13675 3 455 799999952 1 2477777777777776665 45555
Q ss_pred CCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 101 ~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
++|+.|+|++|.+.|.+|+.++++++|+.|+|++|+++|
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg 480 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC
Confidence 556666665555555555555555555555555555554
No 3
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=2e-09 Score=64.00 Aligned_cols=60 Identities=43% Similarity=0.671 Sum_probs=53.1
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l 137 (140)
+++.|++++|.+. .+++..|..+++|++|++++|.+...-|..|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999998 56655799999999999999999966666899999999999999986
No 4
>PLN03150 hypothetical protein; Provisional
Probab=98.86 E-value=2.8e-09 Score=89.64 Aligned_cols=64 Identities=34% Similarity=0.627 Sum_probs=60.6
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcCC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG~ 140 (140)
.+++.|+|++|.+.|.+|. .++.+++|+.|+|++|+++|.+|..++++++|++|+|++|+|+|.
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~ 505 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505 (623)
T ss_pred CCCCEEECCCCcccCcCCh-HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccccc
Confidence 5789999999999999987 799999999999999999999999999999999999999999874
No 5
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.62 E-value=2.3e-08 Score=55.54 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=28.8
Q ss_pred hhhhhhHHHHHHHhcCCCCCCCCCCCC--CCCCCccccccC
Q 043483 35 IHVAASEIERQALLNSGWWKDRIPHNT--SDHCGWVGITCD 73 (140)
Q Consensus 35 ~~~~~l~~~~~~l~~~~~~~~~~w~~~--~~~C~w~gv~C~ 73 (140)
.|..+|.++|+++..++...+.+|... .++|+|.||+|+
T Consensus 3 ~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 3 QDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred HHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 578899999999987666778899865 799999999995
No 6
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.55 E-value=1e-07 Score=53.21 Aligned_cols=37 Identities=41% Similarity=0.643 Sum_probs=31.0
Q ss_pred CCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 101 ~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
++|++|++++|+++ .+|+.++++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 47899999999999 68888999999999999999876
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.48 E-value=1.6e-07 Score=82.15 Aligned_cols=61 Identities=39% Similarity=0.604 Sum_probs=30.0
Q ss_pred eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
++.|+|++|.+.|.+|. .+..+++|++|++++|.++|.+|..+..+++|+.||+++|+++|
T Consensus 501 L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 501 LMQLKLSENKLSGEIPD-ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred cCEEECcCCcceeeCCh-HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence 33444444444444433 34445555555555555555555555555555555555555543
No 8
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.79 E-value=1.2e-05 Score=64.12 Aligned_cols=62 Identities=27% Similarity=0.336 Sum_probs=53.4
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeC-cCCcCc
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDL-DRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~l-s~N~ls 138 (140)
...++|+|..|.|+ .||+-.|..+++|+.|||++|+++-.-|.+|..+.+|..|-+ ++|+++
T Consensus 67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 36899999999999 677768999999999999999999888999999999877655 558764
No 9
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.74 E-value=1.8e-05 Score=46.64 Aligned_cols=38 Identities=50% Similarity=0.681 Sum_probs=33.0
Q ss_pred CCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 101 ~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
|+|++|++++|++...-+..|.++++|++|++++|.++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~ 38 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT 38 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC
Confidence 57899999999999544457899999999999999886
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.72 E-value=3.2e-05 Score=55.55 Aligned_cols=59 Identities=36% Similarity=0.549 Sum_probs=18.9
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhh-cCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~-~~l~~L~~L~ls~N~ls 138 (140)
.+++.|+|++|.+. .+. .+..+++|+.|++++|.++ .+++.+ ..+++|++|++++|++.
T Consensus 42 ~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 42 DKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp TT--EEE-TTS--S---T--T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---
T ss_pred cCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCC
Confidence 35666677777666 232 2555666666666666666 343333 24666666666666653
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.64 E-value=8.9e-06 Score=58.72 Aligned_cols=57 Identities=33% Similarity=0.533 Sum_probs=37.9
Q ss_pred eEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 79 TDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 79 ~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
..+++.+|.+. .+|. .+..++.|+.|+++-|++. ..|..||.++.|++|||++|+++
T Consensus 59 evln~~nnqie-~lp~-~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 59 EVLNLSNNQIE-ELPT-SISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLN 115 (264)
T ss_pred hhhhcccchhh-hcCh-hhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccc
Confidence 33444444444 2333 4666777777777777776 67777888888888888888775
No 12
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.55 E-value=9.7e-05 Score=41.04 Aligned_cols=40 Identities=35% Similarity=0.606 Sum_probs=32.2
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccch
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILS 119 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~ 119 (140)
.++.|++++|++. .+|+ .+.++++|+.|++++|.++ .+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~-~l~~l~~L~~L~l~~N~i~-~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPP-ELSNLPNLETLNLSNNPIS-DISP 41 (44)
T ss_dssp T-SEEEETSSS-S-SHGG-HGTTCTTSSEEEETSSCCS-BEGG
T ss_pred cceEEEccCCCCc-ccCc-hHhCCCCCCEEEecCCCCC-CCcC
Confidence 5788999999999 5665 5999999999999999998 4543
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.53 E-value=1.1e-05 Score=58.27 Aligned_cols=61 Identities=31% Similarity=0.484 Sum_probs=54.5
Q ss_pred CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
..+++.+.|+.|.++ .+|+ .+..+.+|+.|++.+|++. .+|..++.+++|+.|+++-|++.
T Consensus 32 ~s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~ 92 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN 92 (264)
T ss_pred hhhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh
Confidence 357899999999998 4555 6999999999999999999 79999999999999999988874
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.36 E-value=0.00015 Score=62.81 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=33.3
Q ss_pred CCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcCC
Q 043483 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140 (140)
Q Consensus 101 ~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG~ 140 (140)
.+|+.|++++|+++ .+|..+.++++|+.|+|++|.|+|.
T Consensus 422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 35677788888887 7899999999999999999999873
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.34 E-value=0.00016 Score=51.88 Aligned_cols=58 Identities=31% Similarity=0.530 Sum_probs=17.4
Q ss_pred CCeeEEecCCCCCccccCCccCC-CCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGELGRLNFS-CFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~-~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.+.+.|+|.++.++ .+. .++ .+.+|+.|++++|.+. .++ .+..+++|++|++++|+++
T Consensus 19 ~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 19 VKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---
T ss_pred cccccccccccccc-ccc--chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC
Confidence 35788999999888 333 355 5789999999999999 454 4788999999999999986
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.34 E-value=7.6e-05 Score=59.95 Aligned_cols=80 Identities=25% Similarity=0.290 Sum_probs=60.9
Q ss_pred CCCCCCCCCCccccccCC---------------CCCeeEEecCCCCCccccC-----------------------CccCC
Q 043483 57 IPHNTSDHCGWVGITCDY---------------EGRITDIGLAESKIKGELG-----------------------RLNFS 98 (140)
Q Consensus 57 ~w~~~~~~C~w~gv~C~~---------------~~~v~~L~L~~~~l~g~l~-----------------------~~~l~ 98 (140)
+|. +...|.+...+|-. ..+++.++++.|.+.- +| +--+.
T Consensus 425 sfv-~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~ 502 (565)
T KOG0472|consen 425 SFV-PLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLK 502 (565)
T ss_pred ccc-hHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccccccccChHHhh
Confidence 455 55667666666621 1246778888887652 22 11177
Q ss_pred CCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 99 CFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 99 ~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
++.+|..|||.+|.+. +||+.+++|++|++|++++|.|+-
T Consensus 503 nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 503 NMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred hhhhcceeccCCCchh-hCChhhccccceeEEEecCCccCC
Confidence 8999999999999999 899999999999999999999873
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.22 E-value=0.00015 Score=60.68 Aligned_cols=61 Identities=21% Similarity=0.308 Sum_probs=50.6
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.+..|+|..|+++.. ..-.+.+|+.|+.|++++|.+....+..|...++|++|||++|+++
T Consensus 270 kme~l~L~~N~l~~v-n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAV-NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred ccceeecccchhhhh-hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 567788888887732 2225888999999999999999888899999999999999999875
No 18
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.21 E-value=0.00019 Score=33.88 Aligned_cols=22 Identities=64% Similarity=0.883 Sum_probs=18.3
Q ss_pred CCcEEEccCCccccccchhhcCC
Q 043483 102 NLQYLDLSNNNLSGSILSQIGSL 124 (140)
Q Consensus 102 ~L~~L~l~~n~l~G~iP~~~~~l 124 (140)
+|++||+++|+++ .||+.|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 5889999999999 899887654
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.18 E-value=7.8e-05 Score=63.04 Aligned_cols=60 Identities=33% Similarity=0.422 Sum_probs=46.7
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
....|+|++|++. +||..-+.+|+.|-+|||++|++. .+|+.+..+..|++|+|++|.|.
T Consensus 127 n~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred CcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh
Confidence 3455667777665 455544778888889999999998 78888899999999999998763
No 20
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.12 E-value=9.5e-05 Score=51.51 Aligned_cols=62 Identities=26% Similarity=0.400 Sum_probs=48.3
Q ss_pred CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.-+++.++|++|.+.. +|+---..++.++.|++.+|.++ .+|.++..++.|+.|+++.|.|.
T Consensus 52 ~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred CceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence 4578889999998873 34312334557888999999998 78999999999999999998875
No 21
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.97 E-value=0.0003 Score=56.60 Aligned_cols=62 Identities=32% Similarity=0.510 Sum_probs=47.0
Q ss_pred cCCCCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483 72 CDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 72 C~~~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l 137 (140)
|..-.++-.+||..|.+. .+|. ++..+++|.+||+++|.+++ +|.++|++ .|+.|.+.+|.+
T Consensus 248 ~~~L~~l~vLDLRdNklk-e~Pd-e~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNKLK-EVPD-EICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred hcccccceeeeccccccc-cCch-HHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCch
Confidence 334457777888888877 5565 68888888888888888884 77778888 788888887765
No 22
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.88 E-value=0.00038 Score=54.35 Aligned_cols=57 Identities=28% Similarity=0.483 Sum_probs=37.2
Q ss_pred eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
++.+||++|.++ .+-. ...-+|.++.|++++|.+. .+-. +..+.+|+.||||+|.++
T Consensus 286 LtelDLS~N~I~-~iDE-SvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDE-SVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hhhccccccchh-hhhh-hhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH
Confidence 466777777766 2222 3555677777777777776 2322 666777777777777664
No 23
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.79 E-value=8e-05 Score=63.00 Aligned_cols=60 Identities=25% Similarity=0.357 Sum_probs=42.8
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccc-cccchhhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLS-GSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~-G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
++..|+|+.|.|+ .+|. .+++|+.|+.|++.+|+++ .-||+.||++.+|+++..++|.|.
T Consensus 269 ~lEtLNlSrNQLt-~LP~-avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE 329 (1255)
T KOG0444|consen 269 NLETLNLSRNQLT-VLPD-AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE 329 (1255)
T ss_pred hhhhhccccchhc-cchH-HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence 3444555555555 3454 5788888888888888875 348888888888888888888764
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.69 E-value=0.0011 Score=50.55 Aligned_cols=38 Identities=42% Similarity=0.634 Sum_probs=17.8
Q ss_pred CCCcEEEccCCccccc----cchhhcCCCCCCEEeCcCCcCc
Q 043483 101 PNLQYLDLSNNNLSGS----ILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 101 ~~L~~L~l~~n~l~G~----iP~~~~~l~~L~~L~ls~N~ls 138 (140)
++|++|++++|.+.+. ++..+..+++|++|++++|.++
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 3555555555554422 2223344455555555555443
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.55 E-value=0.02 Score=49.71 Aligned_cols=42 Identities=7% Similarity=-0.059 Sum_probs=25.0
Q ss_pred hhhccccchhhhhhHHHHHHHhcCCCCC--CCCCCCCCCCCCcc
Q 043483 27 VASATNISIHVAASEIERQALLNSGWWK--DRIPHNTSDHCGWV 68 (140)
Q Consensus 27 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~--~~~w~~~~~~C~w~ 68 (140)
..+......++..+.+..+.|..+++.. -..|....++|.-.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~ 98 (754)
T PRK15370 55 HPPETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILS 98 (754)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccC
Confidence 3344555666777777777776555421 23477677788543
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.54 E-value=0.0012 Score=50.36 Aligned_cols=62 Identities=23% Similarity=0.433 Sum_probs=37.8
Q ss_pred CeeEEecCCCCCccc----cCCccCCCC-CCCcEEEccCCccccc----cchhhcCCCCCCEEeCcCCcCcC
Q 043483 77 RITDIGLAESKIKGE----LGRLNFSCF-PNLQYLDLSNNNLSGS----ILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~----l~~~~l~~l-~~L~~L~l~~n~l~G~----iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
+++.|+++++.+.+. +.. .+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+++
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred cccEEEeeCCccchHHHHHHHH-HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 466777776666521 111 23445 6777777777777743 33345566777788887777763
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.49 E-value=0.00099 Score=53.48 Aligned_cols=61 Identities=28% Similarity=0.273 Sum_probs=31.9
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l 137 (140)
.+++.|+|++|.+++.-+. .|..+..++.|.|..|++.-.--..|.++..|++|+|.+|++
T Consensus 274 ~~L~~lnlsnN~i~~i~~~-aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDG-AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQI 334 (498)
T ss_pred ccceEeccCCCccchhhhh-hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCee
Confidence 4778888888888743222 344444444444444444422222344445555555555544
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.49 E-value=0.0003 Score=61.30 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=17.0
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLS 114 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~ 114 (140)
++..|+|+.|.|. .+|+..+.++..|+.|+||+|+++
T Consensus 384 hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred ceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh
Confidence 4556666666554 233323344444444444444443
No 29
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.41 E-value=0.0022 Score=54.00 Aligned_cols=60 Identities=30% Similarity=0.492 Sum_probs=41.8
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccch-hhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILS-QIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~-~~~~l~~L~~L~ls~N~ls 138 (140)
.+..|+|++|.++ .++.-.|..+.+|..|.|++|.++ .+|. .|.++++|+.|||.+|++.
T Consensus 174 ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 174 NIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred CceEEeecccccc-ccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccccee
Confidence 3455555555554 233334777888888888888888 5665 4666999999999888764
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.41 E-value=0.0013 Score=52.20 Aligned_cols=58 Identities=36% Similarity=0.537 Sum_probs=33.2
Q ss_pred CeeEEecCCCCCccccCCccCCCCC-CCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFP-NLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~-~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l 137 (140)
.++.+++.++.+. .+++ ....++ +|+.|++++|.+. .+|..+..++.|+.|++++|++
T Consensus 117 ~l~~L~l~~n~i~-~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred ceeEEecCCcccc-cCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCchh
Confidence 4666666666665 3333 244442 5666666666666 4555556666666666666654
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.38 E-value=0.0067 Score=54.86 Aligned_cols=58 Identities=31% Similarity=0.310 Sum_probs=39.8
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRN 135 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N 135 (140)
.+++.++|+++..-+.+|. +..+++|+.|++++|..-..+|..++++++|+.|+++++
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 3556666665543344443 667778888888777666678887888888888888764
No 32
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.14 E-value=0.00055 Score=59.70 Aligned_cols=56 Identities=30% Similarity=0.449 Sum_probs=27.1
Q ss_pred eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483 78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l 137 (140)
++.|+|+||.|. .+|. .+.+++.|+.|...+|++. .+| ++.+++.|+++|+|.|+|
T Consensus 409 LeeL~LSGNkL~-~Lp~-tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 409 LEELNLSGNKLT-TLPD-TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred hHHHhcccchhh-hhhH-HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchh
Confidence 444455555544 3332 3444555555555555554 344 445555555555555544
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.12 E-value=0.0023 Score=56.36 Aligned_cols=57 Identities=28% Similarity=0.471 Sum_probs=30.5
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRN 135 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N 135 (140)
.++.|||++|.--+.+|. .+++|-+|++|+++...+. .+|..++++..|.+|++.++
T Consensus 572 ~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 572 LLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred ceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccc
Confidence 344555554433344444 4555555555555555555 55555555555555555443
No 34
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.04 E-value=0.0098 Score=51.79 Aligned_cols=15 Identities=47% Similarity=0.727 Sum_probs=10.1
Q ss_pred CCCcEEEccCCcccc
Q 043483 101 PNLQYLDLSNNNLSG 115 (140)
Q Consensus 101 ~~L~~L~l~~n~l~G 115 (140)
++|++|++++|++.+
T Consensus 302 ~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 302 PGLQELSVSDNQLAS 316 (788)
T ss_pred cccceeECCCCcccc
Confidence 456777777777664
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.95 E-value=0.0054 Score=48.63 Aligned_cols=59 Identities=39% Similarity=0.609 Sum_probs=48.9
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.++.++++.|.+. .++. ++..+++|+.|++++|.+. .+|...+.++.|+.|++++|+++
T Consensus 141 nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 141 NLKELDLSDNKIE-SLPS-PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred hcccccccccchh-hhhh-hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc
Confidence 6888888888877 3433 6889999999999999998 68887778999999999999875
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.87 E-value=0.012 Score=51.07 Aligned_cols=36 Identities=31% Similarity=0.494 Sum_probs=24.0
Q ss_pred CCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 101 ~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
+.|+.|++++|++. .+|..+. ++|++|++++|+|++
T Consensus 262 s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 262 SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT 297 (754)
T ss_pred CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc
Confidence 35677777777777 4666543 467777777777753
No 37
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=95.81 E-value=0.012 Score=53.19 Aligned_cols=57 Identities=23% Similarity=0.242 Sum_probs=40.0
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRN 135 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N 135 (140)
.++.|+|+++...+.+|. .++++++|+.|+++++..-+.+|..+ ++++|+.|++++|
T Consensus 779 sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPS-SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC 835 (1153)
T ss_pred cchheeCCCCCCccccCh-hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence 567777777776666666 67888888888888766555677654 5666666666654
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.07 E-value=0.0014 Score=45.73 Aligned_cols=58 Identities=28% Similarity=0.389 Sum_probs=50.0
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l 137 (140)
.++.++|.+|.++ .+|. ++..++.|+.|++..|.+. ..|..+..+.+|..||...|..
T Consensus 78 t~t~lNl~~neis-dvPe-E~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPE-ELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred hhhhhhcchhhhh-hchH-HHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence 5788999999998 5666 6999999999999999999 6788888899999999877754
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.05 E-value=0.0067 Score=50.86 Aligned_cols=43 Identities=28% Similarity=0.461 Sum_probs=36.5
Q ss_pred cCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcCC
Q 043483 96 NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140 (140)
Q Consensus 96 ~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG~ 140 (140)
++..|+ |..||++.|++. .||-.|.+|+.|++|-|.+|.|..+
T Consensus 207 El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 207 ELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred HHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 355444 788999999999 7999999999999999999998753
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=94.76 E-value=0.0062 Score=51.04 Aligned_cols=57 Identities=32% Similarity=0.516 Sum_probs=37.0
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l 137 (140)
..+.++|+.|.++ .+|. +++.|+ |+.|-+++|+++ .+|.+++.+..|..||.+.|.+
T Consensus 122 ~lt~l~ls~NqlS-~lp~-~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 122 ALTFLDLSSNQLS-HLPD-GLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI 178 (722)
T ss_pred HHHHhhhccchhh-cCCh-hhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhh
Confidence 4566677777766 3444 566666 666777777766 5666666666677777766654
No 41
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.72 E-value=0.042 Score=40.60 Aligned_cols=56 Identities=32% Similarity=0.509 Sum_probs=26.9
Q ss_pred eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhc-CCCCCCEEeCcCCcC
Q 043483 78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIG-SLSNLKYLDLDRNNL 137 (140)
Q Consensus 78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~-~l~~L~~L~ls~N~l 137 (140)
...|||++|.+. .++ .|..+++|..|.+++|.++. |-+.+. .+++|..|.|++|.+
T Consensus 44 ~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 44 FDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cceecccccchh-hcc--cCCCccccceEEecCCccee-eccchhhhccccceEEecCcch
Confidence 345556555554 111 24445555556666666553 222222 334455555555544
No 42
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.65 E-value=0.024 Score=24.86 Aligned_cols=13 Identities=69% Similarity=0.915 Sum_probs=5.5
Q ss_pred CCcEEEccCCccc
Q 043483 102 NLQYLDLSNNNLS 114 (140)
Q Consensus 102 ~L~~L~l~~n~l~ 114 (140)
+|+.|++++|+|.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.54 E-value=0.018 Score=45.11 Aligned_cols=73 Identities=22% Similarity=0.290 Sum_probs=48.5
Q ss_pred CCCccccccC--CCCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccc-hhhcCCCCCCEEeCcCCcC
Q 043483 64 HCGWVGITCD--YEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSIL-SQIGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 64 ~C~w~gv~C~--~~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP-~~~~~l~~L~~L~ls~N~l 137 (140)
...|.-|.|- .-.+++.|+|+.|.++..|...| ..+.+|+.|-|.+..+...-- ..+..++.++.|++|.|.+
T Consensus 83 iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 83 ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred hccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 3446655553 45678888888888876655533 456677788777777764333 3356677888888888854
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=0.022 Score=44.56 Aligned_cols=63 Identities=33% Similarity=0.404 Sum_probs=49.0
Q ss_pred CCeeEEecCCCCCcc--ccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKG--ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g--~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+|..+||.+|.++. .++. -+.++|+|+.|+++.|.+.-.|-..-..+.+|++|-|.+..|+.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w 135 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSW 135 (418)
T ss_pred hhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCCh
Confidence 589999999999872 2222 27889999999999999986665443577889999988877754
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.21 E-value=0.024 Score=44.51 Aligned_cols=36 Identities=33% Similarity=0.571 Sum_probs=29.4
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccc
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLS 114 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~ 114 (140)
..|+.++++.|++. .+. .+..|++|+.|||++|.++
T Consensus 307 Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 307 PKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred cceeEEecccccee-eeh--hhhhcccceEeecccchhH
Confidence 57899999999987 333 3778889999999999876
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.03 E-value=0.013 Score=50.70 Aligned_cols=35 Identities=46% Similarity=0.521 Sum_probs=20.9
Q ss_pred CcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 103 LQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 103 L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
|+.|.+.+|.++- + ..+.++.+|+.||+++|-++|
T Consensus 234 L~~L~lrnN~l~t-L-~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 234 LQLLNLRNNALTT-L-RGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred heeeeecccHHHh-h-hhHHhhhhhhccchhHhhhhc
Confidence 4444444444431 1 135667888888888887765
No 47
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.95 E-value=0.053 Score=26.08 Aligned_cols=20 Identities=60% Similarity=0.795 Sum_probs=15.9
Q ss_pred CCCCcEEEccCCccccccchh
Q 043483 100 FPNLQYLDLSNNNLSGSILSQ 120 (140)
Q Consensus 100 l~~L~~L~l~~n~l~G~iP~~ 120 (140)
+++|++|+|++|.+. .+|+.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 467899999999988 56764
No 48
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.95 E-value=0.053 Score=26.08 Aligned_cols=20 Identities=60% Similarity=0.795 Sum_probs=15.9
Q ss_pred CCCCcEEEccCCccccccchh
Q 043483 100 FPNLQYLDLSNNNLSGSILSQ 120 (140)
Q Consensus 100 l~~L~~L~l~~n~l~G~iP~~ 120 (140)
+++|++|+|++|.+. .+|+.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 467899999999988 56764
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.60 E-value=0.042 Score=44.19 Aligned_cols=59 Identities=32% Similarity=0.352 Sum_probs=36.4
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
..++.+++.+|.|... .. .+..+++|++|++++|.+....+ +..++.|+.|++++|.++
T Consensus 95 ~~l~~l~l~~n~i~~i-~~-~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKI-EN-LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS 153 (414)
T ss_pred cceeeeeccccchhhc-cc-chhhhhcchheeccccccccccc--hhhccchhhheeccCcch
Confidence 4566777777777632 21 15667777777777777764322 455555666777666654
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.04 E-value=0.064 Score=40.74 Aligned_cols=35 Identities=46% Similarity=0.599 Sum_probs=16.4
Q ss_pred CCCCcEEEccCCccccccchh---hcCCCCCCEEeCcCCc
Q 043483 100 FPNLQYLDLSNNNLSGSILSQ---IGSLSNLKYLDLDRNN 136 (140)
Q Consensus 100 l~~L~~L~l~~n~l~G~iP~~---~~~l~~L~~L~ls~N~ 136 (140)
+++|++++++.|++.- +++ +..+.+|..||+.++.
T Consensus 90 ~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCC
Confidence 3555555555555541 221 2334445555554443
No 51
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.91 E-value=0.054 Score=47.93 Aligned_cols=62 Identities=32% Similarity=0.452 Sum_probs=47.5
Q ss_pred CeeEEecCCCCC-ccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKI-KGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l-~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.++.+-+..|.. ...++...|..++.|+.|||++|.=-+.+|..++.+-+|++|++++..++
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~ 608 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS 608 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc
Confidence 466666666541 11222223788999999999998888999999999999999999988764
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.06 E-value=0.067 Score=43.03 Aligned_cols=58 Identities=34% Similarity=0.407 Sum_probs=44.1
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.+++.+++++|.|.. +. .+..++.|+.|++++|.+.. ++ .+..++.|+.+++++|++.
T Consensus 118 ~~L~~L~ls~N~I~~-i~--~l~~l~~L~~L~l~~N~i~~-~~-~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 118 VNLQVLDLSFNKITK-LE--GLSTLTLLKELNLSGNLISD-IS-GLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred hcchheecccccccc-cc--chhhccchhhheeccCcchh-cc-CCccchhhhcccCCcchhh
Confidence 467888999998873 22 36777779999999999883 33 3556888999999998865
No 53
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.76 E-value=0.046 Score=25.84 Aligned_cols=19 Identities=53% Similarity=0.693 Sum_probs=10.4
Q ss_pred CCCcEEEccCCccccccch
Q 043483 101 PNLQYLDLSNNNLSGSILS 119 (140)
Q Consensus 101 ~~L~~L~l~~n~l~G~iP~ 119 (140)
++|++|++++|.+++.-..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 4567777777776654443
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.40 E-value=0.25 Score=36.64 Aligned_cols=60 Identities=28% Similarity=0.406 Sum_probs=29.1
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccc--cccchhhcCCCCCCEEeCcCCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLS--GSILSQIGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~--G~iP~~~~~l~~L~~L~ls~N~l 137 (140)
.++..|.|.+|+|.. |.+.--..+++|+.|.|.+|.+. |.+-+ +..+++|++|.+-.|..
T Consensus 64 ~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPV 125 (233)
T ss_pred cccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCch
Confidence 355566666666652 22101222345666666666654 23322 44555555555555543
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=90.92 E-value=0.041 Score=47.74 Aligned_cols=40 Identities=35% Similarity=0.527 Sum_probs=25.9
Q ss_pred CCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 97 FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 97 l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
+.-++.|+.|+|++|++.. .- .+-.+++|++|||++|.|.
T Consensus 183 Lqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred HHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc
Confidence 4445667777777777763 22 4666777777777777664
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.65 E-value=0.17 Score=38.52 Aligned_cols=42 Identities=36% Similarity=0.563 Sum_probs=33.2
Q ss_pred CCCCCCCcEEEccCC--ccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 97 FSCFPNLQYLDLSNN--NLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 97 l~~l~~L~~L~l~~n--~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
+-.|++|++|.++.| ...+.++.-..++++|++|+++.|++.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 556778889999999 666777766667799999999998864
No 57
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.91 E-value=0.39 Score=23.45 Aligned_cols=13 Identities=46% Similarity=0.767 Sum_probs=7.4
Q ss_pred CCCCEEeCcCCcC
Q 043483 125 SNLKYLDLDRNNL 137 (140)
Q Consensus 125 ~~L~~L~ls~N~l 137 (140)
++|+.|++++|++
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4555666666554
No 58
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=87.36 E-value=0.34 Score=39.66 Aligned_cols=61 Identities=18% Similarity=0.385 Sum_probs=36.0
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCcccc-ccchh-----hcCCCCCCEEeCcCCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSG-SILSQ-----IGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G-~iP~~-----~~~l~~L~~L~ls~N~l 137 (140)
.+++|||++|++--.--..-.+.|+.|+.|+++.+.+.. .+|+. ...+++|++|++..|++
T Consensus 247 ~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 247 TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred HHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 567778877776421100125666777777777666642 23332 34567777777777765
No 59
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.10 E-value=0.55 Score=23.07 Aligned_cols=14 Identities=43% Similarity=0.662 Sum_probs=9.4
Q ss_pred CCCCEEeCcCCcCc
Q 043483 125 SNLKYLDLDRNNLS 138 (140)
Q Consensus 125 ~~L~~L~ls~N~ls 138 (140)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777663
No 60
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=86.96 E-value=0.19 Score=39.94 Aligned_cols=40 Identities=33% Similarity=0.394 Sum_probs=19.4
Q ss_pred CCCCCCcEEEccCCccccccchh----hcCCCCCCEEeCcCCcC
Q 043483 98 SCFPNLQYLDLSNNNLSGSILSQ----IGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 98 ~~l~~L~~L~l~~n~l~G~iP~~----~~~l~~L~~L~ls~N~l 137 (140)
-..++|++++||.|.|.-.-++. +.+++.|++|+|.+|.+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 33445555555555554333322 23455555555555543
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=86.60 E-value=0.33 Score=42.04 Aligned_cols=23 Identities=9% Similarity=0.172 Sum_probs=17.4
Q ss_pred ccccccCCCCCeeEEecCCCCCc
Q 043483 67 WVGITCDYEGRITDIGLAESKIK 89 (140)
Q Consensus 67 w~gv~C~~~~~v~~L~L~~~~l~ 89 (140)
+....|.+-..+..||+++.+++
T Consensus 164 dF~~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 164 DFSQLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred hHHHHhhccCccceeecCCCCcc
Confidence 44566766678899999988876
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=85.22 E-value=0.86 Score=35.54 Aligned_cols=41 Identities=34% Similarity=0.475 Sum_probs=28.4
Q ss_pred CCCCCCCcEEEccCCccccccchh----hcCCCCCCEEeCcCCcC
Q 043483 97 FSCFPNLQYLDLSNNNLSGSILSQ----IGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 97 l~~l~~L~~L~l~~n~l~G~iP~~----~~~l~~L~~L~ls~N~l 137 (140)
+-++|+|+..+||.|.|.-..|+. +++-+.|++|.+++|.+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 556777777777777777666654 34566777777777765
No 63
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=83.73 E-value=0.36 Score=39.58 Aligned_cols=62 Identities=34% Similarity=0.358 Sum_probs=29.5
Q ss_pred CeeEEecCCCCCccccCCc-cCCCCCCCcEEEccCCccccccchhh-cCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGELGRL-NFSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~-~l~~l~~L~~L~l~~n~l~G~iP~~~-~~l~~L~~L~ls~N~ls 138 (140)
+|+.+||+.|-+..--+-. -..+|++|+.|+++.|.+.-.+.+.. .-++.|+.|.|+...|+
T Consensus 147 ~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls 210 (505)
T KOG3207|consen 147 NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS 210 (505)
T ss_pred cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCC
Confidence 4555555555443110000 13455666666666666653333221 24555566666555554
No 64
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.57 E-value=0.029 Score=42.52 Aligned_cols=42 Identities=10% Similarity=-0.088 Sum_probs=31.0
Q ss_pred cCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 96 NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 96 ~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
+++++..++.+++.+|..+ ..|.++++.++++++++-.|.|.
T Consensus 83 d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 83 DAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 4666667777777777777 67878888888888887776653
No 65
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.50 E-value=1.1 Score=21.94 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=9.4
Q ss_pred CCCEEeCcCCcCc
Q 043483 126 NLKYLDLDRNNLS 138 (140)
Q Consensus 126 ~L~~L~ls~N~ls 138 (140)
+|+.|++++|+|+
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 5677777777775
No 66
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=79.06 E-value=0.77 Score=36.58 Aligned_cols=63 Identities=24% Similarity=0.283 Sum_probs=42.0
Q ss_pred CCeeEEecCCCCCccccCC-c--cCCCCCCCcEEEccCCccc---ccc----------chhhcCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGELGR-L--NFSCFPNLQYLDLSNNNLS---GSI----------LSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~-~--~l~~l~~L~~L~l~~n~l~---G~i----------P~~~~~l~~L~~L~ls~N~ls 138 (140)
++++.++|+.|.+...-++ + -+.....|+.|.|.+|.+. |.. ..-+++-+.|++++.++|++.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 3899999999988643222 0 1566788888888888875 211 112345667888888888764
No 67
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=75.31 E-value=0.11 Score=39.49 Aligned_cols=60 Identities=28% Similarity=0.393 Sum_probs=47.3
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.+|+.||++.|.+. .++. .+..+++|..|+++.|.+. ..|..++++..++.+++..|.++
T Consensus 42 kr~tvld~~s~r~v-n~~~-n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~ 101 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGK-NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS 101 (326)
T ss_pred ceeeeehhhhhHHH-hhcc-chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh
Confidence 57899999988876 3344 5777888889999988887 67888888888888888777664
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=73.16 E-value=5.5 Score=31.22 Aligned_cols=63 Identities=25% Similarity=0.322 Sum_probs=44.8
Q ss_pred CCeeEEecCCCCCccccCCc---cCCCCCCCcEEEccCCccc----cccchh---------hcCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGELGRL---NFSCFPNLQYLDLSNNNLS----GSILSQ---------IGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~---~l~~l~~L~~L~l~~n~l~----G~iP~~---------~~~l~~L~~L~ls~N~ls 138 (140)
.++..++|+.|.+....|+. -+..-+.|..|.+++|.+. |.|-.. ..+-+.|++++..+|+|.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 47888999999887655541 1667788999999999885 222211 124578999999988874
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.17 E-value=0.56 Score=36.65 Aligned_cols=63 Identities=25% Similarity=0.316 Sum_probs=29.3
Q ss_pred cCCCCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccch--hhcCCCCCCEEeCcCCcCc
Q 043483 72 CDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILS--QIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 72 C~~~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~--~~~~l~~L~~L~ls~N~ls 138 (140)
|-.-..+..|.|+-|.++. +. ++..+++|+.|+|..|.+. .+-. -+.++++|+.|-|..|.-.
T Consensus 37 c~kMp~lEVLsLSvNkIss-L~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISS-LA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HHhcccceeEEeecccccc-ch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcc
Confidence 4334456666666666652 21 3444445555555554443 1211 1234444454444444433
No 70
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=65.83 E-value=0.45 Score=37.51 Aligned_cols=58 Identities=28% Similarity=0.275 Sum_probs=36.9
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDR 134 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~ 134 (140)
++..+||++..++-.--..-+..+.+|+.|.+.++++...|-.++.+-.+|+.|+++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 3555566555544210001256677788888888888877777777777777777753
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=61.92 E-value=17 Score=23.46 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=14.2
Q ss_pred cCCCCCCCcEEEccCCccccccch-hhcCCCCCCEEeCc
Q 043483 96 NFSCFPNLQYLDLSNNNLSGSILS-QIGSLSNLKYLDLD 133 (140)
Q Consensus 96 ~l~~l~~L~~L~l~~n~l~G~iP~-~~~~l~~L~~L~ls 133 (140)
.+..+++|+.+++..+ +. .++. .+.+. +|+.+.+.
T Consensus 76 ~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTTT-TTECEEEETTT--B-EEHTTTTTT--T--EEE-T
T ss_pred cccccccccccccCcc-cc-EEchhhhcCC-CceEEEEC
Confidence 3555566666666543 33 2332 34444 55555554
No 72
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=56.00 E-value=9.9 Score=33.17 Aligned_cols=34 Identities=44% Similarity=0.678 Sum_probs=21.3
Q ss_pred CCCCCCCcEEEccCCccccccchhhcCCCCCCEEeC
Q 043483 97 FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDL 132 (140)
Q Consensus 97 l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~l 132 (140)
..++++|.+||+++.+++.. ..++++++|++|.+
T Consensus 169 c~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~m 202 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNL--SGISRLKNLQVLSM 202 (699)
T ss_pred hhccCccceeecCCCCccCc--HHHhccccHHHHhc
Confidence 45566777777777666632 45666666666655
No 73
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=51.93 E-value=9.8 Score=25.88 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=15.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHh
Q 043483 6 FNTCRAVIVFIWAALTLLIVHV 27 (140)
Q Consensus 6 ~~~~~~~~~~ll~~~~~~~~~~ 27 (140)
||+||++..+|++++.+....+
T Consensus 1 MmtcRLLCalLvlaLcCCpsvc 22 (143)
T PF01456_consen 1 MMTCRLLCALLVLALCCCPSVC 22 (143)
T ss_pred CchHHHHHHHHHHHHHcCcchh
Confidence 4689999988777775543333
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=51.91 E-value=24 Score=29.02 Aligned_cols=10 Identities=20% Similarity=0.311 Sum_probs=5.6
Q ss_pred CCcEEEccCC
Q 043483 102 NLQYLDLSNN 111 (140)
Q Consensus 102 ~L~~L~l~~n 111 (140)
+|++|+++++
T Consensus 95 nLe~L~Ls~C 104 (426)
T PRK15386 95 GLEKLTVCHC 104 (426)
T ss_pred hhhheEccCc
Confidence 4555555555
No 75
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=46.93 E-value=9.3 Score=30.38 Aligned_cols=34 Identities=38% Similarity=0.430 Sum_probs=15.2
Q ss_pred CCCCCCCcEEEccCCccccccchh---hcCCCCCCEEeC
Q 043483 97 FSCFPNLQYLDLSNNNLSGSILSQ---IGSLSNLKYLDL 132 (140)
Q Consensus 97 l~~l~~L~~L~l~~n~l~G~iP~~---~~~l~~L~~L~l 132 (140)
+.+++.|++|.++... +.+|.. +...+.|.+||+
T Consensus 334 ~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 334 FFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDV 370 (419)
T ss_pred HHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEe
Confidence 4445555555544332 223332 344455555554
No 76
>PF15240 Pro-rich: Proline-rich
Probab=45.61 E-value=14 Score=26.66 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=6.2
Q ss_pred HHHHHHHHhhhccccc
Q 043483 19 ALTLLIVHVASATNIS 34 (140)
Q Consensus 19 ~~~~~~~~~~~~~~~~ 34 (140)
+|++.+.+.++++..+
T Consensus 5 LLSvALLALSSAQ~~d 20 (179)
T PF15240_consen 5 LLSVALLALSSAQSTD 20 (179)
T ss_pred HHHHHHHHhhhccccc
Confidence 3333333344444433
No 77
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.12 E-value=1.2 Score=34.95 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=41.3
Q ss_pred CCeeEEecCCCCCccccCCcc-CCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGELGRLN-FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~-l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
..|..|+.=|.+|. ++. ...++.|+.|.|+-|+++---| +..+++|+.|+|-.|.+.
T Consensus 19 ~~vkKLNcwg~~L~----DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD----DISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HHhhhhcccCCCcc----HHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc
Confidence 34555555555554 223 4578899999999999984433 789999999999888764
No 78
>PRK15386 type III secretion protein GogB; Provisional
Probab=43.60 E-value=28 Score=28.64 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=19.6
Q ss_pred CCcEEEccCCcc--ccccchhhcCC------------------CCCCEEeCcCCc
Q 043483 102 NLQYLDLSNNNL--SGSILSQIGSL------------------SNLKYLDLDRNN 136 (140)
Q Consensus 102 ~L~~L~l~~n~l--~G~iP~~~~~l------------------~~L~~L~ls~N~ 136 (140)
.|+.|++..+.. -+.+|+.+..| ++|++|+++++.
T Consensus 113 sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 113 SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS 167 (426)
T ss_pred ccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCC
Confidence 456666665543 24566554433 357777776654
No 79
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=42.67 E-value=12 Score=22.38 Aligned_cols=6 Identities=33% Similarity=0.639 Sum_probs=2.7
Q ss_pred CCCCCc
Q 043483 62 SDHCGW 67 (140)
Q Consensus 62 ~~~C~w 67 (140)
.++|+|
T Consensus 62 ~~CC~~ 67 (75)
T PF02950_consen 62 SECCSG 67 (75)
T ss_dssp TCBSSS
T ss_pred CCCCCC
Confidence 344554
No 80
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=40.56 E-value=23 Score=16.57 Aligned_cols=11 Identities=45% Similarity=0.564 Sum_probs=7.2
Q ss_pred CCCCEEeCcCC
Q 043483 125 SNLKYLDLDRN 135 (140)
Q Consensus 125 ~~L~~L~ls~N 135 (140)
++|+.|+|++.
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 56777777665
No 81
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.13 E-value=1.1e+02 Score=21.30 Aligned_cols=71 Identities=13% Similarity=0.106 Sum_probs=34.1
Q ss_pred hhHHHHHHHhcCCCCCCCCCCCCCCCCCccccccC--------CCCCeeEEecCCCCCccccCCccCCCCCCCcEEEccC
Q 043483 39 ASEIERQALLNSGWWKDRIPHNTSDHCGWVGITCD--------YEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSN 110 (140)
Q Consensus 39 ~l~~~~~~l~~~~~~~~~~w~~~~~~C~w~gv~C~--------~~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~ 110 (140)
.-.++.+++.......-..|..+.. +|.||.-. ...+|+.+.|.. -...+|-.++.+..-+--....+
T Consensus 38 ft~qeLeal~~~T~ete~Pw~~gn~--rf~Gvsls~Ll~~l~ak~tslt~iALNd--Y~a~Ip~sDi~kynpIlA~~~nG 113 (155)
T COG3915 38 FTLQELEALPDETIETETPWTQGNT--RFKGVSLSALLAWLGAKQTSLTVIALND--YWAEIPYSDIEKYNPILAIQNNG 113 (155)
T ss_pred ecHHHHhcCCcceEEEecCcccCce--eecceeHHHHHHHhhccCcceEEEEecc--eeccCcHHHhhhcccEEEEEeCC
Confidence 4455556655544433345642332 47776652 245677766633 23334332344444344444455
Q ss_pred Ccc
Q 043483 111 NNL 113 (140)
Q Consensus 111 n~l 113 (140)
|..
T Consensus 114 n~M 116 (155)
T COG3915 114 NYM 116 (155)
T ss_pred cEE
Confidence 544
No 82
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=36.81 E-value=24 Score=35.48 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=22.8
Q ss_pred ecCCCCCccccCCccCCCCCCCcEEEccCCccc
Q 043483 82 GLAESKIKGELGRLNFSCFPNLQYLDLSNNNLS 114 (140)
Q Consensus 82 ~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~ 114 (140)
||++|+|+ .++.-.|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 46777777 454445777888888888888775
No 83
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=34.82 E-value=59 Score=18.13 Aligned_cols=6 Identities=17% Similarity=0.412 Sum_probs=3.0
Q ss_pred CCccccc
Q 043483 1 MECGFFN 7 (140)
Q Consensus 1 m~~~~~~ 7 (140)
|+ |..+
T Consensus 1 MD-CvLR 6 (54)
T PF06716_consen 1 MD-CVLR 6 (54)
T ss_pred Cc-hHHH
Confidence 66 5443
No 84
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=32.60 E-value=33 Score=26.64 Aligned_cols=19 Identities=21% Similarity=0.129 Sum_probs=14.4
Q ss_pred ccchhHHHHHHHHHHHHHH
Q 043483 5 FFNTCRAVIVFIWAALTLL 23 (140)
Q Consensus 5 ~~~~~~~~~~~ll~~~~~~ 23 (140)
+||+-|++++..|++|+|-
T Consensus 3 MmMTGRVLLVCALCVLWCg 21 (291)
T PTZ00459 3 MMMTGRVLLVCALCVLWCG 21 (291)
T ss_pred cchhchHHHHHHHHHHhcC
Confidence 5678898888777777764
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=31.53 E-value=25 Score=29.87 Aligned_cols=60 Identities=32% Similarity=0.411 Sum_probs=36.4
Q ss_pred CCeeEEecCCCCCccccCCc-c-CCCCCCCcEEEccCC--ccccccchhhcCC--CCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGELGRL-N-FSCFPNLQYLDLSNN--NLSGSILSQIGSL--SNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~-~-l~~l~~L~~L~l~~n--~l~G~iP~~~~~l--~~L~~L~ls~N~ls 138 (140)
..|.++.|++|+|.- +-.+ . -..-|.|..|+|++| .+. --.++.++ ..|++|-+.+|.+.
T Consensus 218 p~i~sl~lsnNrL~~-Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYH-LDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cceeeeecccchhhc-hhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccc
Confidence 468888888888762 2111 1 223467888999998 333 22234333 34678888888764
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.98 E-value=31 Score=29.37 Aligned_cols=38 Identities=39% Similarity=0.468 Sum_probs=28.1
Q ss_pred CCCCCCcEEEccCCcccc--ccchhhcCCCCCCEEeCcCC
Q 043483 98 SCFPNLQYLDLSNNNLSG--SILSQIGSLSNLKYLDLDRN 135 (140)
Q Consensus 98 ~~l~~L~~L~l~~n~l~G--~iP~~~~~l~~L~~L~ls~N 135 (140)
.+.+.+..+.|++|++.- .+..--..-++|+.|+|++|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 457788899999999872 12222345679999999999
No 87
>PF08116 Toxin_29: PhTx neurotoxin family; InterPro: IPR012634 This family consists of PhTx insecticidal neurotoxins that are found in the venom of Phoneutria nigriventer (Brazilian armed spider). The venom of the P. nigrivente contains numerous neurotoxic polypeptides of 30-140 amino acids, which exert a range of biological effects. While some of these neurotoxins are lethal to mice after intracerebroventricular injections, others are extremely toxic to insects of the orders Diptera and Dictyoptera but had much weaker toxic effects on mice [].; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=24.91 E-value=44 Score=16.66 Aligned_cols=12 Identities=25% Similarity=0.814 Sum_probs=7.5
Q ss_pred CCCccccccCCC
Q 043483 64 HCGWVGITCDYE 75 (140)
Q Consensus 64 ~C~w~gv~C~~~ 75 (140)
+|+++|-.|.+.
T Consensus 2 fC~~nGqQCtSD 13 (31)
T PF08116_consen 2 FCRYNGQQCTSD 13 (31)
T ss_pred ccccCccccCcC
Confidence 567777776543
No 88
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=22.32 E-value=1.7e+02 Score=16.92 Aligned_cols=17 Identities=0% Similarity=0.329 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhhh
Q 043483 13 IVFIWAALTLLIVHVAS 29 (140)
Q Consensus 13 ~~~ll~~~~~~~~~~~~ 29 (140)
+++++++++.....+.+
T Consensus 17 lLiliis~~f~lI~~l~ 33 (61)
T PF06692_consen 17 LLILIISFVFFLITSLG 33 (61)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 33444444444444433
Done!