Query 043483
Match_columns 140
No_of_seqs 173 out of 1636
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 09:07:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043483.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043483hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.7 2E-18 7E-23 145.3 5.5 108 29-139 6-140 (768)
2 1ogq_A PGIP-2, polygalacturona 99.7 7.9E-18 2.7E-22 128.3 7.0 105 32-139 3-115 (313)
3 4eco_A Uncharacterized protein 99.7 1.3E-17 4.5E-22 138.0 7.1 105 33-139 28-220 (636)
4 4ecn_A Leucine-rich repeat pro 99.6 3E-16 1E-20 134.4 7.3 107 31-139 265-462 (876)
5 4fcg_A Uncharacterized protein 99.4 4.2E-13 1.4E-17 102.8 4.3 105 31-138 23-140 (328)
6 3e6j_A Variable lymphocyte rec 99.2 5.1E-11 1.8E-15 86.8 7.6 81 58-139 12-102 (229)
7 2ifg_A High affinity nerve gro 99.2 9.2E-11 3.1E-15 89.7 8.0 75 64-139 7-94 (347)
8 3g39_A Variable lymphocyte rec 99.1 1.4E-10 4.9E-15 80.9 7.2 76 63-139 7-92 (170)
9 1w8a_A SLIT protein; signaling 99.1 1.8E-10 6.3E-15 81.7 6.7 76 63-138 6-91 (192)
10 2o6r_A Variable lymphocyte rec 99.1 4.3E-10 1.5E-14 78.4 7.3 77 62-139 4-90 (177)
11 2o6s_A Variable lymphocyte rec 99.0 4.5E-10 1.5E-14 80.1 7.3 78 61-139 3-90 (208)
12 3rgz_A Protein brassinosteroid 99.0 2.6E-10 9E-15 96.0 5.9 62 77-139 633-694 (768)
13 2v9t_B SLIT homolog 2 protein 99.0 9.2E-10 3.2E-14 79.7 7.5 79 59-138 5-93 (220)
14 2r9u_A Variable lymphocyte rec 98.9 2.6E-09 8.8E-14 74.8 7.6 61 77-138 34-94 (174)
15 2z81_A CD282 antigen, TOLL-lik 98.9 1.5E-09 5.2E-14 87.2 6.8 74 64-139 3-88 (549)
16 2wfh_A SLIT homolog 2 protein 98.9 2.2E-09 7.5E-14 76.3 6.7 60 78-138 56-115 (193)
17 2v70_A SLIT-2, SLIT homolog 2 98.9 2.4E-09 8E-14 77.5 6.6 77 61-137 7-93 (220)
18 2z80_A TOLL-like receptor 2, v 98.9 2.6E-09 9E-14 81.8 6.7 61 77-138 53-113 (353)
19 1w8a_A SLIT protein; signaling 98.9 3.6E-09 1.2E-13 75.0 6.2 63 76-139 78-140 (192)
20 3m19_A Variable lymphocyte rec 98.8 2.9E-09 9.8E-14 78.1 4.9 61 77-138 36-96 (251)
21 2o6q_A Variable lymphocyte rec 98.8 5.1E-09 1.7E-13 77.6 6.2 77 62-139 2-99 (270)
22 3g39_A Variable lymphocyte rec 98.8 2.1E-08 7.2E-13 69.8 7.0 64 75-139 53-116 (170)
23 3zyi_A Leucine-rich repeat-con 98.8 1.7E-08 5.9E-13 79.8 7.3 63 76-139 75-137 (452)
24 2ft3_A Biglycan; proteoglycan, 98.8 1.9E-08 6.6E-13 76.3 7.3 79 59-138 27-115 (332)
25 2wfh_A SLIT homolog 2 protein 98.7 2.2E-08 7.6E-13 71.1 6.9 61 77-139 32-92 (193)
26 4g8a_A TOLL-like receptor 4; l 98.7 1.1E-08 3.7E-13 82.8 5.9 63 76-139 52-114 (635)
27 2z66_A Variable lymphocyte rec 98.7 1.4E-08 4.9E-13 76.0 5.8 77 61-138 3-91 (306)
28 2v70_A SLIT-2, SLIT homolog 2 98.7 2E-08 6.8E-13 72.6 6.3 60 78-138 107-166 (220)
29 1xku_A Decorin; proteoglycan, 98.7 4.1E-08 1.4E-12 74.4 7.8 77 61-138 27-113 (330)
30 3v47_A TOLL-like receptor 5B a 98.7 2.3E-08 8E-13 78.5 6.6 61 76-137 30-91 (455)
31 1ogq_A PGIP-2, polygalacturona 98.7 7.6E-09 2.6E-13 78.4 3.7 62 76-138 76-138 (313)
32 3zyj_A Leucine-rich repeat-con 98.7 5.7E-08 1.9E-12 76.6 7.7 61 77-138 65-125 (440)
33 2je0_A Acidic leucine-rich nuc 98.7 3.6E-08 1.2E-12 66.6 5.7 59 77-138 43-101 (149)
34 2r9u_A Variable lymphocyte rec 98.7 6E-08 2.1E-12 67.8 6.9 64 75-139 56-119 (174)
35 2xot_A Amphoterin-induced prot 98.7 4.2E-08 1.4E-12 75.6 6.6 79 59-138 12-101 (361)
36 4fcg_A Uncharacterized protein 98.6 4.9E-08 1.7E-12 74.5 6.8 62 77-139 230-291 (328)
37 4g8a_A TOLL-like receptor 4; l 98.6 4.4E-08 1.5E-12 79.2 6.9 63 76-139 494-556 (635)
38 2v9t_B SLIT homolog 2 protein 98.6 6.3E-08 2.1E-12 69.9 7.0 63 76-139 80-142 (220)
39 2o6r_A Variable lymphocyte rec 98.6 7.4E-08 2.5E-12 66.9 6.9 63 76-139 76-138 (177)
40 2id5_A Lingo-1, leucine rich r 98.6 6.2E-08 2.1E-12 76.8 7.2 71 67-138 13-93 (477)
41 3t6q_A CD180 antigen; protein- 98.6 5E-08 1.7E-12 79.3 6.3 62 76-138 33-94 (606)
42 3oja_A Leucine-rich immune mol 98.6 5.2E-08 1.8E-12 78.2 6.3 74 65-139 109-183 (487)
43 2je0_A Acidic leucine-rich nuc 98.6 9.3E-08 3.2E-12 64.5 6.6 61 76-139 17-78 (149)
44 3e6j_A Variable lymphocyte rec 98.6 1.1E-07 3.8E-12 68.9 6.6 60 77-138 89-148 (229)
45 4eco_A Uncharacterized protein 98.6 5.9E-08 2E-12 80.2 5.6 64 75-139 205-288 (636)
46 2ell_A Acidic leucine-rich nuc 98.6 7.7E-08 2.6E-12 66.2 5.2 61 77-138 72-133 (168)
47 3vq2_A TLR4, TOLL-like recepto 98.6 1.1E-07 3.9E-12 77.2 7.0 60 77-137 33-92 (606)
48 2o6s_A Variable lymphocyte rec 98.6 1.8E-07 6E-12 66.5 7.0 60 77-137 77-136 (208)
49 3m19_A Variable lymphocyte rec 98.6 1.6E-07 5.5E-12 68.7 7.0 62 77-139 84-145 (251)
50 3oja_B Anopheles plasmodium-re 98.5 1.5E-07 5.1E-12 77.0 6.9 61 77-138 76-136 (597)
51 4ezg_A Putative uncharacterize 98.5 1.8E-07 6.1E-12 66.1 6.4 60 76-136 88-147 (197)
52 2ell_A Acidic leucine-rich nuc 98.5 1.2E-07 4.1E-12 65.2 5.3 61 76-139 49-109 (168)
53 3a79_B TLR6, VLRB.59, TOLL-lik 98.5 1.8E-07 6.3E-12 75.7 7.2 62 76-138 52-113 (562)
54 2o6q_A Variable lymphocyte rec 98.5 2.5E-07 8.7E-12 68.3 7.0 64 75-139 60-123 (270)
55 1dce_A Protein (RAB geranylger 98.5 1.6E-07 5.6E-12 77.0 6.4 60 77-139 487-547 (567)
56 3j0a_A TOLL-like receptor 5; m 98.5 1.9E-07 6.5E-12 79.3 6.9 62 78-139 50-111 (844)
57 1ozn_A Reticulon 4 receptor; N 98.5 2.7E-07 9.4E-12 68.4 6.9 59 77-136 33-91 (285)
58 3v47_A TOLL-like receptor 5B a 98.5 2E-07 6.9E-12 73.1 6.5 62 77-138 55-116 (455)
59 1dce_A Protein (RAB geranylger 98.5 1.6E-07 5.6E-12 77.0 6.0 61 75-139 462-522 (567)
60 2xwt_C Thyrotropin receptor; s 98.5 1.5E-07 5.3E-12 68.2 5.2 62 76-138 31-94 (239)
61 4b8c_D Glucose-repressible alc 98.5 1.4E-07 4.8E-12 79.3 5.7 60 77-139 271-330 (727)
62 3rfs_A Internalin B, repeat mo 98.5 3.5E-07 1.2E-11 67.7 7.1 61 78-139 159-219 (272)
63 3rfs_A Internalin B, repeat mo 98.4 4.3E-07 1.5E-11 67.2 7.0 42 97-138 129-170 (272)
64 2z7x_B TOLL-like receptor 1, v 98.4 4.3E-07 1.5E-11 72.5 7.4 64 75-139 323-388 (520)
65 2z7x_B TOLL-like receptor 1, v 98.4 2.8E-07 9.7E-12 73.6 6.2 62 76-138 21-82 (520)
66 4ecn_A Leucine-rich repeat pro 98.4 1.9E-07 6.4E-12 80.2 5.3 64 75-139 447-530 (876)
67 2z81_A CD282 antigen, TOLL-lik 98.4 3.7E-07 1.3E-11 73.2 6.6 64 75-139 49-112 (549)
68 2z66_A Variable lymphocyte rec 98.4 5.5E-07 1.9E-11 67.3 7.1 59 78-137 177-235 (306)
69 2xot_A Amphoterin-induced prot 98.4 4.3E-07 1.5E-11 70.0 6.6 61 77-138 89-149 (361)
70 1ozn_A Reticulon 4 receptor; N 98.4 5E-07 1.7E-11 67.0 6.6 61 77-138 154-214 (285)
71 3vq2_A TLR4, TOLL-like recepto 98.4 5E-07 1.7E-11 73.4 6.8 62 76-138 473-534 (606)
72 2z62_A TOLL-like receptor 4, v 98.4 4.7E-07 1.6E-11 66.9 6.1 61 77-138 53-113 (276)
73 1ziw_A TOLL-like receptor 3; i 98.4 3.6E-07 1.2E-11 75.3 5.9 62 76-138 25-86 (680)
74 2ifg_A High affinity nerve gro 98.4 4.9E-07 1.7E-11 68.8 6.2 63 75-139 55-117 (347)
75 1p9a_G Platelet glycoprotein I 98.4 7.8E-07 2.7E-11 66.7 7.0 41 97-137 144-184 (290)
76 1a9n_A U2A', U2A'; complex (nu 98.4 4.8E-07 1.6E-11 62.8 5.2 60 77-138 65-126 (176)
77 4b8c_D Glucose-repressible alc 98.4 2.4E-07 8.2E-12 77.9 4.2 60 76-138 247-306 (727)
78 1wwl_A Monocyte differentiatio 98.4 1.9E-07 6.6E-12 70.4 3.3 62 76-139 121-187 (312)
79 1wwl_A Monocyte differentiatio 98.4 1.9E-07 6.5E-12 70.5 3.2 63 76-139 149-215 (312)
80 3zyj_A Leucine-rich repeat-con 98.4 6.6E-07 2.3E-11 70.4 6.4 60 78-138 209-268 (440)
81 3zyi_A Leucine-rich repeat-con 98.3 6E-07 2.1E-11 70.9 6.1 42 97-138 238-279 (452)
82 2z63_A TOLL-like receptor 4, v 98.3 8.3E-07 2.9E-11 71.3 7.0 62 77-139 471-532 (570)
83 1p9a_G Platelet glycoprotein I 98.3 9.4E-07 3.2E-11 66.3 6.8 62 77-139 101-162 (290)
84 3t6q_A CD180 antigen; protein- 98.3 6.7E-07 2.3E-11 72.6 6.4 62 76-138 57-118 (606)
85 3a79_B TLR6, VLRB.59, TOLL-lik 98.3 1.1E-06 3.6E-11 71.2 7.5 63 76-139 353-417 (562)
86 2z62_A TOLL-like receptor 4, v 98.3 8.9E-07 3E-11 65.3 6.4 63 76-139 76-138 (276)
87 3oja_A Leucine-rich immune mol 98.3 3.9E-07 1.3E-11 73.1 4.4 60 77-139 35-94 (487)
88 1xku_A Decorin; proteoglycan, 98.3 9.5E-07 3.2E-11 66.8 6.3 62 76-139 216-277 (330)
89 3cvr_A Invasion plasmid antige 98.3 3.1E-07 1.1E-11 75.5 3.7 73 58-139 36-114 (571)
90 2z80_A TOLL-like receptor 2, v 98.3 1.1E-06 3.9E-11 67.0 6.6 64 75-139 75-138 (353)
91 2ft3_A Biglycan; proteoglycan, 98.3 7.3E-07 2.5E-11 67.6 5.3 62 76-139 217-278 (332)
92 3j0a_A TOLL-like receptor 5; m 98.3 8.3E-07 2.9E-11 75.4 5.8 63 76-139 73-137 (844)
93 2z63_A TOLL-like receptor 4, v 98.3 9.6E-07 3.3E-11 70.9 5.9 63 76-139 445-508 (570)
94 4ezg_A Putative uncharacterize 98.3 8E-07 2.7E-11 62.7 4.7 62 76-139 112-173 (197)
95 1a9n_A U2A', U2A'; complex (nu 98.3 8.3E-07 2.8E-11 61.6 4.6 59 76-138 42-101 (176)
96 3o6n_A APL1; leucine-rich repe 98.3 2E-06 6.7E-11 66.5 6.9 59 78-137 71-129 (390)
97 4glp_A Monocyte differentiatio 98.3 9.9E-07 3.4E-11 66.4 5.1 59 77-139 225-286 (310)
98 2id5_A Lingo-1, leucine rich r 98.3 1.7E-06 5.7E-11 68.5 6.6 62 77-139 249-310 (477)
99 3o53_A Protein LRIM1, AGAP0063 98.2 4E-07 1.4E-11 68.8 2.9 59 77-138 35-93 (317)
100 4glp_A Monocyte differentiatio 98.2 6.8E-07 2.3E-11 67.3 4.0 39 99-137 143-181 (310)
101 3o53_A Protein LRIM1, AGAP0063 98.2 1.7E-06 6E-11 65.3 6.1 63 76-139 120-183 (317)
102 3oja_B Anopheles plasmodium-re 98.2 2.2E-06 7.5E-11 70.1 6.9 63 76-139 123-185 (597)
103 1ziw_A TOLL-like receptor 3; i 98.2 2.6E-06 9E-11 70.1 6.7 62 77-139 98-159 (680)
104 4ay9_X Follicle-stimulating ho 98.2 1.2E-06 4.1E-11 67.1 4.2 74 63-137 7-92 (350)
105 3rw6_A Nuclear RNA export fact 98.2 1.5E-06 5.3E-11 65.1 4.4 61 76-139 170-234 (267)
106 3o6n_A APL1; leucine-rich repe 98.2 4.3E-06 1.5E-10 64.6 6.9 63 76-139 117-179 (390)
107 2xwt_C Thyrotropin receptor; s 98.1 1.4E-06 4.8E-11 63.0 3.6 63 76-139 55-119 (239)
108 1xeu_A Internalin C; cellular 98.1 4.9E-06 1.7E-10 61.5 6.3 58 76-139 63-120 (263)
109 4fmz_A Internalin; leucine ric 98.1 5.6E-06 1.9E-10 62.7 5.8 61 76-139 265-325 (347)
110 4fmz_A Internalin; leucine ric 98.0 2.4E-06 8.1E-11 64.8 3.2 61 75-138 286-346 (347)
111 1h6t_A Internalin B; cell adhe 98.0 1.1E-05 3.6E-10 60.5 6.6 58 76-138 68-125 (291)
112 1h6t_A Internalin B; cell adhe 98.0 9.4E-06 3.2E-10 60.7 6.1 40 97-138 152-191 (291)
113 2ast_B S-phase kinase-associat 98.0 1.9E-06 6.5E-11 65.0 1.9 58 77-135 94-152 (336)
114 3bz5_A Internalin-J, INLJ; leu 98.0 1.9E-05 6.6E-10 62.8 7.8 56 77-139 192-247 (457)
115 3g06_A SSPH2 (leucine-rich rep 98.0 1.4E-05 4.7E-10 66.3 7.1 58 76-139 241-298 (622)
116 1xeu_A Internalin C; cellular 98.0 1.3E-05 4.4E-10 59.2 6.2 57 78-139 108-164 (263)
117 1ds9_A Outer arm dynein; leuci 98.0 2.9E-07 9.9E-12 65.1 -2.7 60 76-139 48-107 (198)
118 3bz5_A Internalin-J, INLJ; leu 98.0 2.2E-05 7.6E-10 62.4 7.7 56 77-139 86-141 (457)
119 1m9s_A Internalin B; cell inva 97.9 1.3E-05 4.4E-10 66.2 6.2 40 97-138 149-188 (605)
120 1jl5_A Outer protein YOPM; leu 97.9 2.9E-07 1E-11 73.3 -3.6 62 76-139 11-85 (454)
121 2ast_B S-phase kinase-associat 97.9 1.1E-05 3.8E-10 60.7 5.2 62 76-139 70-132 (336)
122 1ds9_A Outer arm dynein; leuci 97.9 7.8E-07 2.7E-11 62.8 -1.4 61 76-138 18-83 (198)
123 1h6u_A Internalin H; cell adhe 97.9 2.1E-05 7.3E-10 59.2 6.1 56 77-137 130-185 (308)
124 1h6u_A Internalin H; cell adhe 97.9 2.3E-05 7.9E-10 59.0 6.2 59 76-139 107-165 (308)
125 1o6v_A Internalin A; bacterial 97.9 2.7E-05 9.2E-10 61.6 6.5 59 76-139 68-126 (466)
126 1jl5_A Outer protein YOPM; leu 97.8 9.9E-06 3.4E-10 64.4 3.4 40 100-139 356-410 (454)
127 3g06_A SSPH2 (leucine-rich rep 97.8 4E-06 1.4E-10 69.5 1.1 35 100-138 80-114 (622)
128 2ca6_A RAN GTPase-activating p 97.8 1E-05 3.6E-10 62.3 3.1 61 77-138 217-287 (386)
129 1o6v_A Internalin A; bacterial 97.8 3.4E-05 1.2E-09 61.0 5.9 18 121-138 349-366 (466)
130 2ca6_A RAN GTPase-activating p 97.8 8.9E-06 3E-10 62.7 2.4 63 76-139 244-317 (386)
131 3goz_A Leucine-rich repeat-con 97.8 9.2E-06 3.2E-10 62.3 2.3 62 77-139 52-123 (362)
132 3cvr_A Invasion plasmid antige 97.8 2.5E-05 8.6E-10 64.2 4.9 35 104-139 210-244 (571)
133 1m9s_A Internalin B; cell inva 97.7 3.3E-05 1.1E-09 63.8 5.5 59 76-139 153-211 (605)
134 3rw6_A Nuclear RNA export fact 97.7 1.7E-05 5.8E-10 59.4 3.4 42 98-139 167-210 (267)
135 4ay9_X Follicle-stimulating ho 97.7 3.2E-05 1.1E-09 59.1 4.6 65 75-139 53-118 (350)
136 3goz_A Leucine-rich repeat-con 97.7 1E-05 3.4E-10 62.1 1.2 63 76-139 80-152 (362)
137 1z7x_W Ribonuclease inhibitor; 97.5 2E-05 6.8E-10 61.7 0.5 63 76-139 341-412 (461)
138 1z7x_W Ribonuclease inhibitor; 97.2 9.3E-05 3.2E-09 57.9 1.8 62 77-139 86-156 (461)
139 3rfe_A Platelet glycoprotein I 97.2 0.00092 3.1E-08 44.4 6.2 56 80-138 12-68 (130)
140 3ogk_B Coronatine-insensitive 97.2 0.00012 4E-09 59.0 1.7 63 76-139 463-527 (592)
141 3un9_A NLR family member X1; l 97.0 0.00026 9E-09 54.9 2.2 42 97-138 207-252 (372)
142 3un9_A NLR family member X1; l 97.0 0.00029 1E-08 54.7 2.1 61 77-138 156-224 (372)
143 1io0_A Tropomodulin; LRR prote 96.5 0.0013 4.3E-08 46.0 2.4 62 76-138 65-136 (185)
144 3ogk_B Coronatine-insensitive 96.4 0.00073 2.5E-08 54.4 0.6 38 100-137 191-232 (592)
145 1io0_A Tropomodulin; LRR prote 96.2 0.0019 6.4E-08 45.1 1.8 62 76-138 93-164 (185)
146 3sb4_A Hypothetical leucine ri 96.1 0.0096 3.3E-07 44.7 5.7 54 77-133 227-282 (329)
147 2p1m_B Transport inhibitor res 96.0 0.0012 4E-08 53.1 0.0 38 100-137 455-493 (594)
148 2ra8_A Uncharacterized protein 95.9 0.0012 4.2E-08 51.1 -0.2 38 100-137 251-291 (362)
149 2p1m_B Transport inhibitor res 95.7 0.0018 6.1E-08 52.1 -0.1 35 76-111 105-140 (594)
150 3sb4_A Hypothetical leucine ri 95.7 0.013 4.3E-07 44.0 4.7 60 76-138 250-310 (329)
151 3rfe_A Platelet glycoprotein I 94.8 0.027 9.1E-07 37.2 3.7 38 76-114 31-68 (130)
152 3e4g_A ATP synthase subunit S, 94.0 0.036 1.2E-06 38.8 3.0 59 76-135 61-124 (176)
153 2ra8_A Uncharacterized protein 92.9 0.036 1.2E-06 42.8 1.7 40 99-138 277-320 (362)
154 1pgv_A TMD-1, tropomodulin TMD 92.2 0.21 7.3E-06 35.4 4.8 60 75-135 69-136 (197)
155 4fdw_A Leucine rich hypothetic 90.2 0.74 2.5E-05 35.7 6.5 36 77-114 158-193 (401)
156 4fdw_A Leucine rich hypothetic 88.0 0.91 3.1E-05 35.2 5.6 38 96-133 266-308 (401)
157 1pgv_A TMD-1, tropomodulin TMD 85.4 0.86 2.9E-05 32.2 3.8 39 100-138 69-111 (197)
158 3e4g_A ATP synthase subunit S, 85.3 0.73 2.5E-05 32.0 3.3 36 101-136 61-96 (176)
159 4h09_A Hypothetical leucine ri 85.2 1.1 3.8E-05 33.8 4.6 36 97-133 282-318 (379)
160 4fs7_A Uncharacterized protein 85.0 1.1 3.7E-05 34.2 4.5 37 96-134 338-375 (394)
161 4gt6_A Cell surface protein; l 83.4 2.5 8.6E-05 32.1 6.0 43 92-136 325-368 (394)
162 4h09_A Hypothetical leucine ri 79.6 3.9 0.00013 30.7 5.8 56 77-135 287-343 (379)
163 4fs7_A Uncharacterized protein 74.1 5.2 0.00018 30.3 5.2 42 92-135 311-353 (394)
164 4gt6_A Cell surface protein; l 68.2 9.9 0.00034 28.7 5.5 41 93-135 303-344 (394)
165 2lz0_A Uncharacterized protein 38.1 59 0.002 19.8 4.5 32 77-110 21-52 (100)
166 3ox7_P MH027; urokinase-type p 22.0 30 0.001 15.1 0.7 10 62-71 5-14 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=2e-18 Score=145.29 Aligned_cols=108 Identities=25% Similarity=0.418 Sum_probs=91.5
Q ss_pred hccccchhhhhhHHHHHHHhcCCCCCCCCCCCCCCCCCccccccCCCCCeeEEecCCCCCccc---cCC-----------
Q 043483 29 SATNISIHVAASEIERQALLNSGWWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGE---LGR----------- 94 (140)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~w~~~~~~C~w~gv~C~~~~~v~~L~L~~~~l~g~---l~~----------- 94 (140)
+++..+.|..++.++|+.+.++. ..++|..+.+||.|.||+|+ .++|+.|+|+++++.|. +++
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~--~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l 82 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKN--LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTT--SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred cccCCHHHHHHHHHHHhhCCCcc--cccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence 33446668889999999887544 67899878899999999998 79999999999999886 321
Q ss_pred -----------ccCCCCCCCcEEEccCCccccccch--hhcCCCCCCEEeCcCCcCcC
Q 043483 95 -----------LNFSCFPNLQYLDLSNNNLSGSILS--QIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 95 -----------~~l~~l~~L~~L~l~~n~l~G~iP~--~~~~l~~L~~L~ls~N~lsG 139 (140)
..++.+++|++|+|++|.+.|.+|. .++++++|++|++++|.++|
T Consensus 83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 140 (768)
T 3rgz_A 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF 140 (768)
T ss_dssp ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEEC
T ss_pred CCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCC
Confidence 1588899999999999999999998 89999999999999998875
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=7.9e-18 Score=128.28 Aligned_cols=105 Identities=27% Similarity=0.446 Sum_probs=84.6
Q ss_pred ccchhhhhhHHHHHHHhcCCCCCCCCCCCCCCCCC--ccccccCCC---CCeeEEecCCCCCcc--ccCCccCCCCCCCc
Q 043483 32 NISIHVAASEIERQALLNSGWWKDRIPHNTSDHCG--WVGITCDYE---GRITDIGLAESKIKG--ELGRLNFSCFPNLQ 104 (140)
Q Consensus 32 ~~~~~~~~l~~~~~~l~~~~~~~~~~w~~~~~~C~--w~gv~C~~~---~~v~~L~L~~~~l~g--~l~~~~l~~l~~L~ 104 (140)
+.+.|..++.++|+++.++. ...+|..+.++|. |.||.|+.. ++|+.|+|+++++.| .+|. .+.++++|+
T Consensus 3 c~~~~~~aL~~~k~~~~~~~--~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~ 79 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SLANLPYLN 79 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCG--GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GGGGCTTCS
T ss_pred CCHHHHHHHHHHHHhcCCcc--cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh-hHhCCCCCC
Confidence 45667889999999986543 5678977788998 999999854 799999999999998 7776 678888888
Q ss_pred EEEccC-CccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 105 YLDLSN-NNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 105 ~L~l~~-n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
+|++++ |.+.|.+|..++++++|++|++++|.++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 115 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC
Confidence 888884 78887788777777777777777777754
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=1.3e-17 Score=137.95 Aligned_cols=105 Identities=16% Similarity=0.239 Sum_probs=93.1
Q ss_pred cchhhhhhHHHHHHHhcCCCCCC-------CCCCCCCCCCCc---cccccCCCCCeeEEecCCCCCccccCCccCCCCCC
Q 043483 33 ISIHVAASEIERQALLNSGWWKD-------RIPHNTSDHCGW---VGITCDYEGRITDIGLAESKIKGELGRLNFSCFPN 102 (140)
Q Consensus 33 ~~~~~~~l~~~~~~l~~~~~~~~-------~~w~~~~~~C~w---~gv~C~~~~~v~~L~L~~~~l~g~l~~~~l~~l~~ 102 (140)
...|+.|+.+.++++....|... .+|..+.++|.| .||+|+..++|++|+|+++++.|.+|+ .++++++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~-~l~~L~~ 106 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD-AIGQLTE 106 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG-GGGGCTT
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh-HHhcCcc
Confidence 34478899999999888776533 379888999999 999998889999999999999999997 8999999
Q ss_pred CcEEEccCC-----------------------------------------------------------------------
Q 043483 103 LQYLDLSNN----------------------------------------------------------------------- 111 (140)
Q Consensus 103 L~~L~l~~n----------------------------------------------------------------------- 111 (140)
|++|+|++|
T Consensus 107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l 186 (636)
T 4eco_A 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186 (636)
T ss_dssp CCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTT
T ss_pred ceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhh
Confidence 999999988
Q ss_pred -------ccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 112 -------NLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 112 -------~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
+++| ||++++++++|++|+|++|.++|
T Consensus 187 ~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~ 220 (636)
T 4eco_A 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVA 220 (636)
T ss_dssp TTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCG
T ss_pred hhccccCCCcc-CCHHHhcccCCCEEECcCCcccc
Confidence 4456 99999999999999999999987
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=3e-16 Score=134.44 Aligned_cols=107 Identities=19% Similarity=0.266 Sum_probs=89.6
Q ss_pred cccchhhhhhHHHHHHHhcCCCCCCCCCCCCCCC--CCc------------cccccCCCCCeeEEecCCCCCccccCCcc
Q 043483 31 TNISIHVAASEIERQALLNSGWWKDRIPHNTSDH--CGW------------VGITCDYEGRITDIGLAESKIKGELGRLN 96 (140)
Q Consensus 31 ~~~~~~~~~l~~~~~~l~~~~~~~~~~w~~~~~~--C~w------------~gv~C~~~~~v~~L~L~~~~l~g~l~~~~ 96 (140)
+....|..++.++|+++.++.|.....|. ..++ |+| .||.|+..++|+.|+|+++++.|.+|+ .
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~~W~~~~~~~-~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~-~ 342 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGKNWRYYSGTI-NNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD-A 342 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCCSSC-SSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECG-G
T ss_pred ccchHHHHHHHHHHHHcCCCCCCcCCCcc-cccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCch-H
Confidence 34456789999999998766443322232 2355 999 999999889999999999999999997 8
Q ss_pred CCCCCCCcEEEc-cCCccccc-----------------------------------------------------------
Q 043483 97 FSCFPNLQYLDL-SNNNLSGS----------------------------------------------------------- 116 (140)
Q Consensus 97 l~~l~~L~~L~l-~~n~l~G~----------------------------------------------------------- 116 (140)
+++|++|++|+| ++|.+.|.
T Consensus 343 l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~ 422 (876)
T 4ecn_A 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422 (876)
T ss_dssp GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCC
T ss_pred HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccc
Confidence 999999999999 88876665
Q ss_pred -----------------cchhhcCCCCCCEEeCcCCcCcC
Q 043483 117 -----------------ILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 117 -----------------iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
||+.++++++|++|+|++|+|+|
T Consensus 423 l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg 462 (876)
T 4ecn_A 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY 462 (876)
T ss_dssp CCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCG
T ss_pred cchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCC
Confidence 89999999999999999999987
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.35 E-value=4.2e-13 Score=102.83 Aligned_cols=105 Identities=12% Similarity=0.054 Sum_probs=77.7
Q ss_pred cccchhhhhhHHHHHHHhcCCCCCCCCC----CCCCCCCCccccccCC---------CCCeeEEecCCCCCccccCCccC
Q 043483 31 TNISIHVAASEIERQALLNSGWWKDRIP----HNTSDHCGWVGITCDY---------EGRITDIGLAESKIKGELGRLNF 97 (140)
Q Consensus 31 ~~~~~~~~~l~~~~~~l~~~~~~~~~~w----~~~~~~C~w~gv~C~~---------~~~v~~L~L~~~~l~g~l~~~~l 97 (140)
+...++..++.++|..+..+.......| ....++|.|.|+.|+. ..+|+.|+|+++++. .+|. .+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~-~l 100 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD-QA 100 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS-CG
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh-hh
Confidence 3445578899999998865543334567 3467899999999952 368899999988887 5665 56
Q ss_pred CCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 98 SCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 98 ~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.++++|++|++++|.+. .+|..++++++|++|++++|.++
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~ 140 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR 140 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc
Confidence 77777777777777777 77777777777777777777765
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.19 E-value=5.1e-11 Score=86.78 Aligned_cols=81 Identities=23% Similarity=0.283 Sum_probs=60.1
Q ss_pred CCCCCCCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCC
Q 043483 58 PHNTSDHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNL 127 (140)
Q Consensus 58 w~~~~~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L 127 (140)
|..+.+.|+|.+|.|... ..++.|+|++|.+.+..+. .+..+++|++|++++|.+.+..+..+.++++|
T Consensus 12 ~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 90 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPG-VFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90 (229)
T ss_dssp CCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHH-HhhCccCCcEEECCCCCCCCcChhhcccCCCc
Confidence 444788999999999642 3678899999999875554 57777888888888888764333446777778
Q ss_pred CEEeCcCCcCcC
Q 043483 128 KYLDLDRNNLSG 139 (140)
Q Consensus 128 ~~L~ls~N~lsG 139 (140)
++|+|++|++++
T Consensus 91 ~~L~Ls~N~l~~ 102 (229)
T 3e6j_A 91 TVLDLGTNQLTV 102 (229)
T ss_dssp CEEECCSSCCCC
T ss_pred CEEECCCCcCCc
Confidence 888887777764
No 7
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=9.2e-11 Score=89.69 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=65.1
Q ss_pred CCCccccccCCC------------CCeeEEecCC-CCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEE
Q 043483 64 HCGWVGITCDYE------------GRITDIGLAE-SKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYL 130 (140)
Q Consensus 64 ~C~w~gv~C~~~------------~~v~~L~L~~-~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L 130 (140)
.|.|..|.|... .+++.|+|++ |.|.+..+. .|..+++|+.|+|++|+|+|..|..|.++++|++|
T Consensus 7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 589999999754 2488999996 999865444 69999999999999999999888899999999999
Q ss_pred eCcCCcCcC
Q 043483 131 DLDRNNLSG 139 (140)
Q Consensus 131 ~ls~N~lsG 139 (140)
+|++|+|++
T Consensus 86 ~l~~N~l~~ 94 (347)
T 2ifg_A 86 NLSFNALES 94 (347)
T ss_dssp ECCSSCCSC
T ss_pred eCCCCccce
Confidence 999999986
No 8
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=1.4e-10 Score=80.89 Aligned_cols=76 Identities=24% Similarity=0.288 Sum_probs=48.1
Q ss_pred CCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeC
Q 043483 63 DHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDL 132 (140)
Q Consensus 63 ~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~l 132 (140)
..|.|..+.|... ..++.|+|++|.+.+..+. .+..+++|++|++++|++++..|..+.++++|++|+|
T Consensus 7 C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 7 CSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPG-VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp CEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChh-hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4466777777531 3567777777777754443 5666677777777777766544444566666666666
Q ss_pred cCCcCcC
Q 043483 133 DRNNLSG 139 (140)
Q Consensus 133 s~N~lsG 139 (140)
++|+|++
T Consensus 86 ~~N~l~~ 92 (170)
T 3g39_A 86 NDNQLKS 92 (170)
T ss_dssp CSSCCCC
T ss_pred CCCccCE
Confidence 6666654
No 9
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.09 E-value=1.8e-10 Score=81.69 Aligned_cols=76 Identities=22% Similarity=0.330 Sum_probs=40.7
Q ss_pred CCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeC
Q 043483 63 DHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDL 132 (140)
Q Consensus 63 ~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~l 132 (140)
..|.|..+.|... ..++.|++++|.+.+..+...+..+++|++|++++|.+++.+|..+.++++|++|+|
T Consensus 6 C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 3456666666421 245666666666654322212455555555555555555555555555555555555
Q ss_pred cCCcCc
Q 043483 133 DRNNLS 138 (140)
Q Consensus 133 s~N~ls 138 (140)
++|+++
T Consensus 86 s~N~l~ 91 (192)
T 1w8a_A 86 GENKIK 91 (192)
T ss_dssp CSCCCC
T ss_pred CCCcCC
Confidence 555554
No 10
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.06 E-value=4.3e-10 Score=78.40 Aligned_cols=77 Identities=23% Similarity=0.311 Sum_probs=46.7
Q ss_pred CCCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEe
Q 043483 62 SDHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLD 131 (140)
Q Consensus 62 ~~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ 131 (140)
...|.|.++.|... ..++.|++++|.+.+. +...+..+++|++|++++|.+++..|..+.++++|++|+
T Consensus 4 ~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 4 RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 34577888888532 3567777777777643 222356666666666666666644444456666666666
Q ss_pred CcCCcCcC
Q 043483 132 LDRNNLSG 139 (140)
Q Consensus 132 ls~N~lsG 139 (140)
+++|.+++
T Consensus 83 l~~N~l~~ 90 (177)
T 2o6r_A 83 LHENKLQS 90 (177)
T ss_dssp CCSSCCCC
T ss_pred CCCCCccc
Confidence 66666553
No 11
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.05 E-value=4.5e-10 Score=80.11 Aligned_cols=78 Identities=23% Similarity=0.328 Sum_probs=51.2
Q ss_pred CCCCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEE
Q 043483 61 TSDHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYL 130 (140)
Q Consensus 61 ~~~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L 130 (140)
....|.|.+|.|... .+++.|+++++.+.+. +...+..+++|++|++++|.+.+..+..+.++++|++|
T Consensus 3 ~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (208)
T 2o6s_A 3 SRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYL 81 (208)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEE
Confidence 345688999999642 2578888888888743 33245666777777777777664434445666666666
Q ss_pred eCcCCcCcC
Q 043483 131 DLDRNNLSG 139 (140)
Q Consensus 131 ~ls~N~lsG 139 (140)
++++|++++
T Consensus 82 ~Ls~n~l~~ 90 (208)
T 2o6s_A 82 NLSTNQLQS 90 (208)
T ss_dssp ECCSSCCCC
T ss_pred ECCCCcCCc
Confidence 666666653
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.02 E-value=2.6e-10 Score=95.96 Aligned_cols=62 Identities=31% Similarity=0.566 Sum_probs=34.3
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.++.|+|++|.++|.+|. .+++++.|+.|+|++|.++|.||+.++++++|++|||++|+++|
T Consensus 633 ~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp CCCEEECCSSCCBSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred cccEEECcCCcccccCCH-HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence 455566666666655554 45555555555555555555555555555555555555555544
No 13
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.00 E-value=9.2e-10 Score=79.68 Aligned_cols=79 Identities=28% Similarity=0.329 Sum_probs=55.2
Q ss_pred CCCCCCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCC
Q 043483 59 HNTSDHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLK 128 (140)
Q Consensus 59 ~~~~~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~ 128 (140)
++....|.|..+.|... ..++.|++++|.+.+..+. .+..+++|++|++++|.+.+..|..|.++++|+
T Consensus 5 CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~ 83 (220)
T 2v9t_B 5 CPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPG-AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83 (220)
T ss_dssp SCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCC
T ss_pred CCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHh-HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC
Confidence 33445578888888642 2578888888888754332 577777777777777777766677777777777
Q ss_pred EEeCcCCcCc
Q 043483 129 YLDLDRNNLS 138 (140)
Q Consensus 129 ~L~ls~N~ls 138 (140)
+|+|++|+++
T Consensus 84 ~L~Ls~N~l~ 93 (220)
T 2v9t_B 84 SLVLYGNKIT 93 (220)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCcCC
Confidence 7777777765
No 14
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.94 E-value=2.6e-09 Score=74.85 Aligned_cols=61 Identities=26% Similarity=0.292 Sum_probs=34.9
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.++.|+|++|.+.+..+. .+..+++|++|+|++|++++..+..+.++++|++|+|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPG-VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp TCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcEEEeCCCCccccCHH-HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence 456666666666654333 4556666666666666666433333455666666666666554
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.93 E-value=1.5e-09 Score=87.22 Aligned_cols=74 Identities=28% Similarity=0.347 Sum_probs=46.0
Q ss_pred CCCccccccCCC------------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEe
Q 043483 64 HCGWVGITCDYE------------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLD 131 (140)
Q Consensus 64 ~C~w~gv~C~~~------------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ 131 (140)
.|.|.|+ |+.. .+++.|+|++|.+.+..+. .+.++++|++|++++|.+.+..|..++++++|++|+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 4777776 6431 2577778887777754443 466666666666666666655555566666666666
Q ss_pred CcCCcCcC
Q 043483 132 LDRNNLSG 139 (140)
Q Consensus 132 ls~N~lsG 139 (140)
+++|++++
T Consensus 81 Ls~n~l~~ 88 (549)
T 2z81_A 81 LSDNHLSS 88 (549)
T ss_dssp CTTSCCCS
T ss_pred CCCCccCc
Confidence 66665553
No 16
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.92 E-value=2.2e-09 Score=76.34 Aligned_cols=60 Identities=30% Similarity=0.347 Sum_probs=31.5
Q ss_pred eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
++.|+|++|.+++..+. .|..+++|++|+|++|.+++..|..|.++++|++|+|++|.++
T Consensus 56 L~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 56 LTLIDLSNNRISTLSNQ-SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp CCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCEEECCCCcCCEeCHh-HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence 44444444444432221 3555556666666666665544445556666666666666554
No 17
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.91 E-value=2.4e-09 Score=77.52 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=35.8
Q ss_pred CCCCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEE
Q 043483 61 TSDHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYL 130 (140)
Q Consensus 61 ~~~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L 130 (140)
....|.|..+.|... ..++.|+|++|.+.+..+...+..+++|++|++++|.+++..|..+.++++|++|
T Consensus 7 ~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 7 EKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence 334466666666431 2345666666666544322123444444444444444443333334444444444
Q ss_pred eCcCCcC
Q 043483 131 DLDRNNL 137 (140)
Q Consensus 131 ~ls~N~l 137 (140)
+|++|++
T Consensus 87 ~Ls~N~l 93 (220)
T 2v70_A 87 LLTSNRL 93 (220)
T ss_dssp ECCSSCC
T ss_pred ECCCCcc
Confidence 4444443
No 18
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.89 E-value=2.6e-09 Score=81.81 Aligned_cols=61 Identities=28% Similarity=0.324 Sum_probs=36.4
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
+++.|++++|.+.+. +...+.++++|++|++++|.+.+..|..+.++++|++|++++|+++
T Consensus 53 ~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 53 AVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp TCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 566677777766643 2224566666666666666666555555666666666666666554
No 19
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.86 E-value=3.6e-09 Score=74.97 Aligned_cols=63 Identities=27% Similarity=0.380 Sum_probs=42.9
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|+|++|.+.+..+. .+..+++|++|++++|++++.+|..+..+++|++|++++|.+++
T Consensus 78 ~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISNK-MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TTCCEEECCSCCCCEECSS-SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred ccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 3566666666666654333 46677777777777777777777777777777777777777765
No 20
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.83 E-value=2.9e-09 Score=78.12 Aligned_cols=61 Identities=21% Similarity=0.310 Sum_probs=29.5
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.++.|+|+++.+.+..+. .+.++++|++|++++|.+.+..|..+.++++|++|++++|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp TCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCEEEccCCCcCccCHh-HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc
Confidence 345555555555543222 3445555555555555555444444444455555555444443
No 21
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.83 E-value=5.1e-09 Score=77.57 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=54.6
Q ss_pred CCCCCccccccCCCC---------------------CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchh
Q 043483 62 SDHCGWVGITCDYEG---------------------RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQ 120 (140)
Q Consensus 62 ~~~C~w~gv~C~~~~---------------------~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~ 120 (140)
.+.|.|.|+.|.+.+ .++.|+|+++.+.+. +...+..+++|++|++++|.+....+..
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~i~~~~ 80 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQTLPAGI 80 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCSCCCTTT
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccCeeChhh
Confidence 467888887775433 345566666666532 2225788899999999999988544445
Q ss_pred hcCCCCCCEEeCcCCcCcC
Q 043483 121 IGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 121 ~~~l~~L~~L~ls~N~lsG 139 (140)
+.++++|++|++++|.+++
T Consensus 81 ~~~l~~L~~L~l~~n~l~~ 99 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQA 99 (270)
T ss_dssp TSSCTTCCEEECCSSCCCC
T ss_pred hcCCCCCCEEECCCCcCCc
Confidence 6889999999999998764
No 22
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.75 E-value=2.1e-08 Score=69.77 Aligned_cols=64 Identities=19% Similarity=0.169 Sum_probs=55.3
Q ss_pred CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
..+++.|+|++|.|.+. ++..+..+++|++|+|++|++++..|..+.++++|++|+|++|.+++
T Consensus 53 l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 53 LTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred cccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 35799999999999954 44358999999999999999997666679999999999999999875
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.75 E-value=1.7e-08 Score=79.81 Aligned_cols=63 Identities=22% Similarity=0.276 Sum_probs=47.9
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|+|++|++.+..+. .|.++++|++|++++|.+.+..|..+.++++|++|+|++|++++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 137 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137 (452)
T ss_dssp TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB
T ss_pred CCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc
Confidence 3688899999988865444 67778888888888888877666777777778888777777653
No 24
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.75 E-value=1.9e-08 Score=76.34 Aligned_cols=79 Identities=23% Similarity=0.251 Sum_probs=66.2
Q ss_pred CCCCCCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCC
Q 043483 59 HNTSDHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLK 128 (140)
Q Consensus 59 ~~~~~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~ 128 (140)
++....|.|..+.|... .+++.|++++|.+.+..+. .+.++++|++|++++|.+.+..|..++++++|+
T Consensus 27 cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 27 CPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp CCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred CCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHh-HhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 33344578999988632 3689999999999865444 699999999999999999988899999999999
Q ss_pred EEeCcCCcCc
Q 043483 129 YLDLDRNNLS 138 (140)
Q Consensus 129 ~L~ls~N~ls 138 (140)
+|++++|+++
T Consensus 106 ~L~L~~n~l~ 115 (332)
T 2ft3_A 106 KLYISKNHLV 115 (332)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCcCC
Confidence 9999999876
No 25
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.74 E-value=2.2e-08 Score=71.08 Aligned_cols=61 Identities=25% Similarity=0.337 Sum_probs=36.7
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.++.|+|++|.+. .+|. .+..+++|++|++++|.+++..|..|.++++|++|+|++|++++
T Consensus 32 ~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp TCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 4566666666665 3443 46666666666666666665555556666666666666666553
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.74 E-value=1.1e-08 Score=82.80 Aligned_cols=63 Identities=30% Similarity=0.366 Sum_probs=49.9
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
..++.|+|++|.|++ +++..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++
T Consensus 52 ~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred cCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence 368999999999985 444368888888888888888886556678888888888888887753
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.72 E-value=1.4e-08 Score=76.04 Aligned_cols=77 Identities=30% Similarity=0.398 Sum_probs=58.2
Q ss_pred CCCCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccc--cccchhhcCCCCCC
Q 043483 61 TSDHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLS--GSILSQIGSLSNLK 128 (140)
Q Consensus 61 ~~~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~--G~iP~~~~~l~~L~ 128 (140)
....|.|.++.|... .+++.|+|+++.+. .++...+.++++|++|++++|.+. |.+|..+..+++|+
T Consensus 3 ~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81 (306)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred CCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccC
Confidence 345589999999742 37899999999988 455534788999999999999887 44466666777777
Q ss_pred EEeCcCCcCc
Q 043483 129 YLDLDRNNLS 138 (140)
Q Consensus 129 ~L~ls~N~ls 138 (140)
+|++++|.++
T Consensus 82 ~L~Ls~n~i~ 91 (306)
T 2z66_A 82 YLDLSFNGVI 91 (306)
T ss_dssp EEECCSCSEE
T ss_pred EEECCCCccc
Confidence 7777777654
No 28
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.72 E-value=2e-08 Score=72.59 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=26.4
Q ss_pred eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
++.|+|++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|.++
T Consensus 107 L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 107 LKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 33444444444432222 3444444444444444444444444444444444444444443
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.70 E-value=4.1e-08 Score=74.36 Aligned_cols=77 Identities=25% Similarity=0.287 Sum_probs=65.3
Q ss_pred CCCCCCccccccCC----------CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEE
Q 043483 61 TSDHCGWVGITCDY----------EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYL 130 (140)
Q Consensus 61 ~~~~C~w~gv~C~~----------~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L 130 (140)
....|.+..+.|.. ...++.|+|++|.+.+..+. .+.++++|++|++++|.+.+..|..++++++|++|
T Consensus 27 ~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 44567898888863 23688999999999865443 69999999999999999998889999999999999
Q ss_pred eCcCCcCc
Q 043483 131 DLDRNNLS 138 (140)
Q Consensus 131 ~ls~N~ls 138 (140)
++++|+++
T Consensus 106 ~Ls~n~l~ 113 (330)
T 1xku_A 106 YLSKNQLK 113 (330)
T ss_dssp ECCSSCCS
T ss_pred ECCCCcCC
Confidence 99999876
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.70 E-value=2.3e-08 Score=78.48 Aligned_cols=61 Identities=25% Similarity=0.321 Sum_probs=30.3
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccch-hhcCCCCCCEEeCcCCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILS-QIGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~-~~~~l~~L~~L~ls~N~l 137 (140)
.+++.|+|++|.+.+..+. .+.++++|++|++++|.+.+.+|+ .+.++++|++|++++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp TTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred CccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 3567777777777654333 344444444444444444444432 244444444444444443
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.70 E-value=7.6e-09 Score=78.40 Aligned_cols=62 Identities=23% Similarity=0.374 Sum_probs=35.4
Q ss_pred CCeeEEecCC-CCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAE-SKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~-~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.+++.|++++ |.+.+.+|. .+.++++|++|++++|.+.|.+|..+.++++|++|++++|.++
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 138 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138 (313)
T ss_dssp TTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC
Confidence 3566666663 666665554 4555555555555555555555555555555555555555554
No 32
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.66 E-value=5.7e-08 Score=76.56 Aligned_cols=61 Identities=26% Similarity=0.333 Sum_probs=39.4
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.++.|+|++|.+.+..+. .+.++++|++|+|++|.+.+..|..|.++++|++|+|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp TCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred CCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence 466777777777654333 5666666667776666666555556666666666666666654
No 33
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.66 E-value=3.6e-08 Score=66.56 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=27.2
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
+++.|++++|.+.+. . .+..+++|++|++++|.+.+.+|..+.++++|++|++++|.++
T Consensus 43 ~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~ 101 (149)
T 2je0_A 43 ELEFLSTINVGLTSI--A-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101 (149)
T ss_dssp TCCEEECTTSCCCCC--T-TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCC
T ss_pred CCcEEECcCCCCCCc--h-hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCC
Confidence 444555555544432 1 3444444444444444444444444444444444444444443
No 34
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.65 E-value=6e-08 Score=67.79 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=54.5
Q ss_pred CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
..+++.|+|++|.|.+ ++...+..+++|++|+|++|++.+..|..+.++++|++|+|++|.+..
T Consensus 56 l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 56 LVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 3579999999999996 444357899999999999999996555569999999999999999864
No 35
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.65 E-value=4.2e-08 Score=75.65 Aligned_cols=79 Identities=23% Similarity=0.267 Sum_probs=49.1
Q ss_pred CCCCCCCCccccccCCC----------CCeeEEecCCCCCccccCCccCC-CCCCCcEEEccCCccccccchhhcCCCCC
Q 043483 59 HNTSDHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFS-CFPNLQYLDLSNNNLSGSILSQIGSLSNL 127 (140)
Q Consensus 59 ~~~~~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~-~l~~L~~L~l~~n~l~G~iP~~~~~l~~L 127 (140)
++....|.+..+.|... ..++.|+|++|.+.+..+. .+. .+++|++|+|++|.+.+..|..|.++++|
T Consensus 12 Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 90 (361)
T 2xot_A 12 CPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90 (361)
T ss_dssp CCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCccChhhccCCCCC
Confidence 43445567777777531 2467788888887754332 344 66666666666666665555556666666
Q ss_pred CEEeCcCCcCc
Q 043483 128 KYLDLDRNNLS 138 (140)
Q Consensus 128 ~~L~ls~N~ls 138 (140)
++|+|++|+++
T Consensus 91 ~~L~Ls~N~l~ 101 (361)
T 2xot_A 91 RYLDLSSNHLH 101 (361)
T ss_dssp CEEECCSSCCC
T ss_pred CEEECCCCcCC
Confidence 66666666654
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.65 E-value=4.9e-08 Score=74.49 Aligned_cols=62 Identities=18% Similarity=0.121 Sum_probs=41.3
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
+++.|+|++|++.+.+|. .+..+++|++|++++|.+.+.+|..++++++|++|++++|++.|
T Consensus 230 ~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp TCCEEECTTCTTCCBCCC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred CCCEEECcCCcchhhhHH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 455666666666655554 56667777777777777777777767777777777777766655
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.65 E-value=4.4e-08 Score=79.23 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=49.2
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|+|++|.+.+..|. .|.++++|++|+|++|++++..|..+.++++|++||+++|++++
T Consensus 494 ~~L~~L~Ls~N~L~~l~~~-~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 494 RNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred cccCEEECCCCccCCcChH-HHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence 3577888888888765554 67888888888888888887777778888888888888888765
No 38
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.65 E-value=6.3e-08 Score=69.93 Aligned_cols=63 Identities=29% Similarity=0.321 Sum_probs=37.2
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|+|++|.+. .++...+..+++|++|++++|.+.+..|..+.++++|++|+|++|++++
T Consensus 80 ~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 80 RSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp SSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence 34555666666655 2333235566666666666666666555666666666666666666653
No 39
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.64 E-value=7.4e-08 Score=66.86 Aligned_cols=63 Identities=22% Similarity=0.222 Sum_probs=42.2
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|++++|.+++..+. .+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++
T Consensus 76 ~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLPNG-VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccCEEECCCCCccccCHH-HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 4567777777777643332 46677777777777777774333345677777777777777765
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.63 E-value=6.2e-08 Score=76.76 Aligned_cols=71 Identities=27% Similarity=0.369 Sum_probs=49.6
Q ss_pred ccccccCC----------CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCc
Q 043483 67 WVGITCDY----------EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNN 136 (140)
Q Consensus 67 w~gv~C~~----------~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ 136 (140)
|..|.|.. ...++.|+|++|.+.+..+. .|.++++|++|++++|.+.+..|..+.++++|++|+|++|+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 45677753 23577888888888754443 57777777777777777777667777777777777777776
Q ss_pred Cc
Q 043483 137 LS 138 (140)
Q Consensus 137 ls 138 (140)
++
T Consensus 92 l~ 93 (477)
T 2id5_A 92 LK 93 (477)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 41
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.61 E-value=5e-08 Score=79.28 Aligned_cols=62 Identities=21% Similarity=0.165 Sum_probs=41.9
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
..++.|+|++|.+.+..+. .+.++++|++|++++|.+.+..|..|+++++|++|++++|+++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 94 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94 (606)
T ss_dssp TTCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS
T ss_pred CcCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccc
Confidence 3577788888877754443 5666777777777777776666666666666776666666654
No 42
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.61 E-value=5.2e-08 Score=78.24 Aligned_cols=74 Identities=24% Similarity=0.308 Sum_probs=58.3
Q ss_pred CCccccccCCCCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhc-CCCCCCEEeCcCCcCcC
Q 043483 65 CGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIG-SLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 65 C~w~gv~C~~~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~-~l~~L~~L~ls~N~lsG 139 (140)
|...++.+.....++.|+|++|.+.+..|. .++.+++|++|++++|.+.+.+|..+. .+++|++|+|++|.+++
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CcCCCCCccccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 445556665556788889999988876554 688889999999999999988888775 78888888888888765
No 43
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.61 E-value=9.3e-08 Score=64.50 Aligned_cols=61 Identities=28% Similarity=0.446 Sum_probs=55.7
Q ss_pred CCeeEEecCCCCCc-cccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIK-GELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~-g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.++++++.+. +.+|. .+..+++|++|++++|.+.+. +.++++++|++|++++|.+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~ 78 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG 78 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc
Confidence 57899999999998 78877 689999999999999999976 779999999999999999986
No 44
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.57 E-value=1.1e-07 Score=68.94 Aligned_cols=60 Identities=25% Similarity=0.329 Sum_probs=32.5
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
+++.|+|++|.+.+. +...+..+++|++|++++|.+. .+|..+.++++|++|++++|+++
T Consensus 89 ~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVL-PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp TCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred CcCEEECCCCcCCcc-ChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence 455555555555532 2213455555555555555555 45555555555666666555554
No 45
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.57 E-value=5.9e-08 Score=80.18 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=58.1
Q ss_pred CCCeeEEecCCCCCccc-----------------cCCccCC--CCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCC
Q 043483 75 EGRITDIGLAESKIKGE-----------------LGRLNFS--CFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRN 135 (140)
Q Consensus 75 ~~~v~~L~L~~~~l~g~-----------------l~~~~l~--~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N 135 (140)
-.+++.|+|++|.++|. +|. .++ ++++|++|++++|.+.|.+|..++++++|++|++++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 45789999999999985 776 788 9999999999999999999999999999999999999
Q ss_pred c-CcC
Q 043483 136 N-LSG 139 (140)
Q Consensus 136 ~-lsG 139 (140)
+ ++|
T Consensus 284 ~~l~~ 288 (636)
T 4eco_A 284 RGISG 288 (636)
T ss_dssp TTSCH
T ss_pred CCCcc
Confidence 8 876
No 46
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.56 E-value=7.7e-08 Score=66.15 Aligned_cols=61 Identities=33% Similarity=0.439 Sum_probs=29.3
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccc-cchhhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGS-ILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~-iP~~~~~l~~L~~L~ls~N~ls 138 (140)
+++.|++++|.+.+.+|. .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.++
T Consensus 72 ~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 72 KLKKLELSENRIFGGLDM-LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp SCCEEEEESCCCCSCCCH-HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred CCCEEECcCCcCchHHHH-HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 344455555555443322 233455555555555555532 1144555555555555555554
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.56 E-value=1.1e-07 Score=77.16 Aligned_cols=60 Identities=28% Similarity=0.285 Sum_probs=28.5
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l 137 (140)
+++.|+|++|.+.+..+. .+.++++|++|++++|.+.+..|..|+++++|++|++++|.+
T Consensus 33 ~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSY-SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp TCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CcCEEECCCCCcCEeChh-hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 456666666665543322 344444444444444444443344444444444444444444
No 48
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.55 E-value=1.8e-07 Score=66.48 Aligned_cols=60 Identities=25% Similarity=0.292 Sum_probs=25.0
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l 137 (140)
+++.|++++|.+.+. +...+..+++|++|++++|.+.+..|..+.++++|++|++++|++
T Consensus 77 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 77 SLTYLNLSTNQLQSL-PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp TCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcCEEECCCCcCCcc-CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence 344445554444422 111234444444444444444433333334444444444444443
No 49
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.55 E-value=1.6e-07 Score=68.68 Aligned_cols=62 Identities=26% Similarity=0.328 Sum_probs=36.0
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
+++.|+|++|.+.+..+. .+..+++|++|++++|.+.+..|..+.++++|++|++++|++++
T Consensus 84 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLG-VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp TCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cCCEEECCCCcccccChh-HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence 455555555555532222 35566666666666666664444445666666666666666653
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.53 E-value=1.5e-07 Score=77.04 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=38.2
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
+++.|+|++|.+.+..+. .+..+++|++|++++|.+.+..|..++++++|++|+|++|.++
T Consensus 76 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136 (597)
T ss_dssp CCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcEEECCCCCCCCCChH-HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC
Confidence 355666666666654333 4666666777777766666655555666666666666666654
No 51
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.52 E-value=1.8e-07 Score=66.12 Aligned_cols=60 Identities=23% Similarity=0.402 Sum_probs=47.3
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCc
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNN 136 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ 136 (140)
..++.|++++|.+.+..+. .+..+++|++|++++|.+.+..|..++++++|++|++++|.
T Consensus 88 ~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp TTCCEEEEECTTCBGGGSC-CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred CCCCEEEeECCccCcccCh-hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 4677888888888765554 67788888888888888887778888888888888888886
No 52
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.52 E-value=1.2e-07 Score=65.20 Aligned_cols=61 Identities=26% Similarity=0.353 Sum_probs=54.4
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|++++|.+.+. . .+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+++
T Consensus 49 ~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 109 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--S-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD 109 (168)
T ss_dssp GGCCEEEEESSCCCCC--S-SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS
T ss_pred CCCCEEeCcCCCCCCh--h-hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc
Confidence 5789999999998864 3 68999999999999999998888888889999999999999876
No 53
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.52 E-value=1.8e-07 Score=75.70 Aligned_cols=62 Identities=24% Similarity=0.314 Sum_probs=37.9
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.+++.|+|++|.+.+..+. .+..+++|++|++++|.+++..|..|.++++|++||+++|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 113 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMP-DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113 (562)
T ss_dssp TTCCEEECCSSCCCCCCGG-GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred CCcCEEECCCCCccccChh-hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC
Confidence 4566666666666643322 4666666666666666666655566666666666666666554
No 54
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.50 E-value=2.5e-07 Score=68.33 Aligned_cols=64 Identities=28% Similarity=0.331 Sum_probs=54.8
Q ss_pred CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
..+++.|++++|.+.. ++...+..+++|++|++++|.+.+..+..+.++++|++|++++|++++
T Consensus 60 l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 123 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123 (270)
T ss_dssp CTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe
Confidence 3579999999999984 444357899999999999999997666678999999999999999875
No 55
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.50 E-value=1.6e-07 Score=76.95 Aligned_cols=60 Identities=25% Similarity=0.351 Sum_probs=39.3
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCcccccc-chhhcCCCCCCEEeCcCCcCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSI-LSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~i-P~~~~~l~~L~~L~ls~N~lsG 139 (140)
+++.|+|++|.+++ +| .++.+++|+.|++++|.+++.+ |..++++++|++|+|++|.+++
T Consensus 487 ~L~~L~Ls~N~l~~-lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp TCCEEECCSSCCCC-CG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCEEECCCCCCCC-Cc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 45566666666664 33 4666677777777777777655 6667777777777777776654
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.49 E-value=1.9e-07 Score=79.33 Aligned_cols=62 Identities=23% Similarity=0.196 Sum_probs=37.7
Q ss_pred eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
++.|+|++|.+.+.+++..+.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++
T Consensus 50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 111 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD 111 (844)
T ss_dssp CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS
T ss_pred CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc
Confidence 33334433333333323246667777777777777776667777777777777777777664
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.49 E-value=2.7e-07 Score=68.42 Aligned_cols=59 Identities=27% Similarity=0.226 Sum_probs=29.9
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNN 136 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ 136 (140)
.++.|+++++.+.+..+. .+..+++|++|++++|.+.+..|..+.++++|++|++++|.
T Consensus 33 ~l~~L~l~~n~i~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp TCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred CceEEEeeCCcCCccCHH-HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 455566666655532222 34555555555555555554444445555555555555553
No 58
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.49 E-value=2e-07 Score=73.13 Aligned_cols=62 Identities=19% Similarity=0.209 Sum_probs=28.6
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
+++.|+|+++.+.+.+++..+..+++|++|++++|.+.+..|..++++++|++|++++|+++
T Consensus 55 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 116 (455)
T 3v47_A 55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116 (455)
T ss_dssp TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCB
T ss_pred cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCC
Confidence 34445555544444443323444444444444444444444444444444444444444443
No 59
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.48 E-value=1.6e-07 Score=76.96 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=56.2
Q ss_pred CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
..+++.|+|++|.|. .+|. .++.+++|+.|+|++|.+++ +| .++++++|++|+|++|++++
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~ 522 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQ 522 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCS
T ss_pred cccCcEeecCccccc-ccch-hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCC
Confidence 357999999999999 7777 79999999999999999997 78 89999999999999999986
No 60
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.48 E-value=1.5e-07 Score=68.16 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=41.5
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCc-cccccchhhcCCCCCCEEeCcC-CcCc
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNN-LSGSILSQIGSLSNLKYLDLDR-NNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~-l~G~iP~~~~~l~~L~~L~ls~-N~ls 138 (140)
..++.|++++|.+.+. ++..+..+++|++|++++|. +++..|..+.++++|++|++++ |.++
T Consensus 31 ~~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp TTCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC
T ss_pred CcccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee
Confidence 3677788888877743 33257777777777777775 6543334677777777777776 6664
No 61
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.48 E-value=1.4e-07 Score=79.35 Aligned_cols=60 Identities=20% Similarity=0.424 Sum_probs=36.1
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
+++.|+|++|.|. .+|. .++.+++|++|+|++|.++ .||..|+++++|++|+|++|.|+|
T Consensus 271 ~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 271 NLRVLDLSHNRLT-SLPA-ELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp TCCEEECTTSCCS-SCCS-SGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCEEeCcCCcCC-ccCh-hhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence 3455555555555 4444 4566666666666666665 566666666666666666666654
No 62
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.47 E-value=3.5e-07 Score=67.71 Aligned_cols=61 Identities=21% Similarity=0.282 Sum_probs=30.9
Q ss_pred eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
++.|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.|
T Consensus 159 L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 159 LTELDLSYNQLQSLPEG-VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCEEECCCCCcCccCHH-HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 44444444444422211 24555555555555555555444445555556666665555544
No 63
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.45 E-value=4.3e-07 Score=67.23 Aligned_cols=42 Identities=38% Similarity=0.541 Sum_probs=20.6
Q ss_pred CCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 97 FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 97 l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
+..+++|++|++++|.+.+..|..++++++|++|++++|+++
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 444455555555555555433333445555555555555544
No 64
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.44 E-value=4.3e-07 Score=72.54 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=46.2
Q ss_pred CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCcccc--ccchhhcCCCCCCEEeCcCCcCcC
Q 043483 75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSG--SILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G--~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
...++.|++++|.+.+.+|. .+..+++|++|++++|.+.+ .+|..++++++|++|++++|.+++
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred CCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 35677788888887776555 57777777777777777775 566667777777777777777664
No 65
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.43 E-value=2.8e-07 Score=73.62 Aligned_cols=62 Identities=23% Similarity=0.280 Sum_probs=32.1
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.+++.|+|++|.+.+..+. .+..+++|++|++++|.+.+..|..++++++|++||+++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTS-DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp TTCSEEECCSSCCCCCCHH-HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred ccccEEECCCCcccccChh-hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 3455555555555533222 3555555555555555555544555555555555555555543
No 66
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=1.9e-07 Score=80.24 Aligned_cols=64 Identities=19% Similarity=0.160 Sum_probs=57.9
Q ss_pred CCCeeEEecCCCCCcc-----------------ccCCccCC--CCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCC
Q 043483 75 EGRITDIGLAESKIKG-----------------ELGRLNFS--CFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRN 135 (140)
Q Consensus 75 ~~~v~~L~L~~~~l~g-----------------~l~~~~l~--~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N 135 (140)
-.+++.|+|++|.++| .+|. .++ ++++|++|++++|.+.|.+|+.++++++|++|++++|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 4578999999999998 3776 677 9999999999999999999999999999999999999
Q ss_pred c-CcC
Q 043483 136 N-LSG 139 (140)
Q Consensus 136 ~-lsG 139 (140)
+ ++|
T Consensus 526 ~~lsg 530 (876)
T 4ecn_A 526 RGISA 530 (876)
T ss_dssp TTSCH
T ss_pred CCccc
Confidence 8 876
No 67
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.42 E-value=3.7e-07 Score=73.22 Aligned_cols=64 Identities=36% Similarity=0.415 Sum_probs=52.7
Q ss_pred CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
-.+++.|+|++|.+.+..+. .+..+++|++|++++|.+.+..|..++++++|++|++++|.+++
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 112 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGD-AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 112 (549)
T ss_dssp CTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS
T ss_pred CCcccEEECCCCCcCccChh-hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccc
Confidence 35788899999988865544 68888999999999999988777778889999999999888864
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.42 E-value=5.5e-07 Score=67.35 Aligned_cols=59 Identities=24% Similarity=0.327 Sum_probs=22.7
Q ss_pred eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483 78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l 137 (140)
++.|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|++
T Consensus 177 L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp CCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred CCEEECCCCCcCCcCHH-HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 44444444444332222 233334444444444444333222333334444444444433
No 69
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.42 E-value=4.3e-07 Score=69.97 Aligned_cols=61 Identities=21% Similarity=0.214 Sum_probs=31.1
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
+++.|+|++|.|.+..+. .|..+++|++|+|++|.+.+..|..|.++++|++|+|++|+++
T Consensus 89 ~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEF-LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp TCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCEEECCCCcCCcCCHH-HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 455555555555432221 3455555555555555555444445555555555555555544
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.41 E-value=5e-07 Score=67.00 Aligned_cols=61 Identities=26% Similarity=0.232 Sum_probs=29.2
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
+++.|++++|.+.+. +...+..+++|++|++++|.+.+..|..+.++++|++|++++|.++
T Consensus 154 ~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 154 NLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp TCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CccEEECCCCccccc-CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 344444444444422 2212444555555555555555444555555555555555555544
No 71
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.40 E-value=5e-07 Score=73.37 Aligned_cols=62 Identities=26% Similarity=0.246 Sum_probs=41.1
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.+++.|++++|.+.+..+. .+..+++|++|++++|.+.+.+|..+.++++|++|++++|+++
T Consensus 473 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQISWG-VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCCCEEECCCCcCCccChh-hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 3556666666666654443 4666777777777777777766777777777777777777665
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.40 E-value=4.7e-07 Score=66.86 Aligned_cols=61 Identities=21% Similarity=0.285 Sum_probs=34.3
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
+++.|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+.++++|++|++++|.++
T Consensus 53 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 113 (276)
T 2z62_A 53 ELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113 (276)
T ss_dssp TCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred CCcEEECCCCcCCccCHH-HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCcc
Confidence 455555555555532222 3555666666666666666555555666666666666666554
No 73
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.39 E-value=3.6e-07 Score=75.28 Aligned_cols=62 Identities=29% Similarity=0.364 Sum_probs=35.3
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.+++.|+|++|.+.+..+. .+.++++|++|++++|.+.+..|..++++++|++|++++|.++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG-GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC
T ss_pred CCCcEEECCCCCCCCcCHH-HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC
Confidence 3566777777766643222 4555566666666666555555555555555555555555543
No 74
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.39 E-value=4.9e-07 Score=68.82 Aligned_cols=63 Identities=27% Similarity=0.312 Sum_probs=52.6
Q ss_pred CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
..+++.|+|++|.|++..+. .|.++++|++|+|++|+|++..|..+..++ |+.|+|.+|.|..
T Consensus 55 l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 55 LGELRNLTIVKSGLRFVAPD-AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCCCSEEECCSSCCCEECTT-GGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccCCCEEECCCCccceeCHH-HhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 46799999999999986655 689999999999999999964444455555 9999999999863
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.38 E-value=7.8e-07 Score=66.74 Aligned_cols=41 Identities=37% Similarity=0.464 Sum_probs=16.3
Q ss_pred CCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483 97 FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 97 l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l 137 (140)
+..+++|+.|++++|++++..+..+.++++|++|++++|++
T Consensus 144 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence 33344444444444444422112233444444444444443
No 76
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.36 E-value=4.8e-07 Score=62.79 Aligned_cols=60 Identities=28% Similarity=0.406 Sum_probs=30.5
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccch--hhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILS--QIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~--~~~~l~~L~~L~ls~N~ls 138 (140)
+++.|+|++|.+.+ +++..+..+++|++|++++|.+. .+|. .+..+++|++|++++|.++
T Consensus 65 ~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 65 RLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp SCCEEECCSSCCCE-ECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CCCEEECCCCcccc-cCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 44555555555543 22212355555555555555553 3444 4555555666666555553
No 77
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.36 E-value=2.4e-07 Score=77.93 Aligned_cols=60 Identities=32% Similarity=0.441 Sum_probs=43.5
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.+++.|+|++|.|+ .+|. .+..+++|++|+|++|.|+ .+|..++++++|++|+|++|.|+
T Consensus 247 ~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp CSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC
T ss_pred CCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC
Confidence 35666666666666 5554 5777777888888888877 67777777888888888877764
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.36 E-value=1.9e-07 Score=70.42 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=46.3
Q ss_pred CCeeEEecCCCCCccccCCccCCCC-----CCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCF-----PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l-----~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|+|++|.+.+. |. .+..+ ++|++|++++|.+.+..|..++++++|++|++++|++.|
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~-~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DA-WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp CCCSEEEEESCBCSSS-SS-HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred CCccEEEccCCCCcch-hH-HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence 4677777777777765 43 34444 788888888888887777788888888888888888654
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.36 E-value=1.9e-07 Score=70.46 Aligned_cols=63 Identities=22% Similarity=0.321 Sum_probs=52.6
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccc--cchhh--cCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGS--ILSQI--GSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~--iP~~~--~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|+|++|.+.+..+. .+..+++|++|++++|.+.|. +|+.+ +++++|++|++++|++++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 215 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCE-QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215 (312)
T ss_dssp TTCCEEEEESCSCCCCCTT-TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC
T ss_pred CCCcEEEeeCCCCccchHH-HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc
Confidence 5789999999999865544 689999999999999998876 45555 889999999999999873
No 80
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.35 E-value=6.6e-07 Score=70.44 Aligned_cols=60 Identities=18% Similarity=0.260 Sum_probs=32.1
Q ss_pred eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
++.|+|++|.+.+..+. .+..+++|++|++++|.+.+..|..+.++++|++|+|++|+++
T Consensus 209 L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 209 LDELDLSGNHLSAIRPG-SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp CCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred cCEEECCCCccCccChh-hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence 33444444444432222 4555555556666656555555555566666666666666654
No 81
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.35 E-value=6e-07 Score=70.88 Aligned_cols=42 Identities=31% Similarity=0.328 Sum_probs=21.7
Q ss_pred CCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 97 FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 97 l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
+..+++|++|++++|.+.+..|..+.++++|+.|+|++|+++
T Consensus 238 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 444455555555555555444444555555555555555544
No 82
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.35 E-value=8.3e-07 Score=71.30 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=38.3
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
+++.|++++|.+.+..|. .+..+++|++|++++|.+++..|..+.++++|++|++++|.++|
T Consensus 471 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCEEECCCCccccCChh-hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 455556666655544343 46666666666666666666555556666666666666666655
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.35 E-value=9.4e-07 Score=66.27 Aligned_cols=62 Identities=21% Similarity=0.195 Sum_probs=38.1
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
+++.|++++|.+.+..+. .+..+++|++|++++|++.+..|..+.++++|+.|++++|++++
T Consensus 101 ~L~~L~l~~N~l~~l~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 101 ALTVLDVSFNRLTSLPLG-ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp TCCEEECCSSCCCCCCSS-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCEEECCCCcCcccCHH-HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 455666666666533222 46666777777777777765444456667777777777776653
No 84
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.34 E-value=6.7e-07 Score=72.63 Aligned_cols=62 Identities=21% Similarity=0.106 Sum_probs=34.7
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.+++.|+|++|.+.+..|. .|.++++|++|++++|.+.+..|..++++++|++|++++|+++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 118 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHED-TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118 (606)
T ss_dssp TTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS
T ss_pred ccceEEECCCCccceeChh-hccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc
Confidence 3455666666665543333 4555556666666666555555555555555555555555554
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.34 E-value=1.1e-06 Score=71.24 Aligned_cols=63 Identities=22% Similarity=0.280 Sum_probs=37.1
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCcccc--ccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSG--SILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G--~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.+++++|.+.+.++. .+..+++|++|++++|.+++ .+|..+.++++|++|++++|++++
T Consensus 353 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp CCCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred CCceEEECCCCccccchhh-hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 4566666666666654444 45666666666666666654 344455566666666666665543
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.34 E-value=8.9e-07 Score=65.33 Aligned_cols=63 Identities=25% Similarity=0.265 Sum_probs=40.8
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|++++|.+.+..+. .+.++++|++|++++|.+.+..+..++++++|++|++++|.+++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 76 SHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp TTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred cCCCEEECCCCccCccChh-hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence 4566777777776644333 46667777777777777765555456677777777777776653
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.32 E-value=3.9e-07 Score=73.14 Aligned_cols=60 Identities=27% Similarity=0.432 Sum_probs=44.8
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
+++.|+|++|.+.+..|. .+..+++|++|+|++|.+.+.+| ++.+++|++|++++|.+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~ 94 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE 94 (487)
T ss_dssp GCCEEECCSSCCCCCCGG-GGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE
T ss_pred CccEEEeeCCcCCCCCHH-HHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC
Confidence 678888888887764443 57788888888888888877655 7778888888887777653
No 88
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.32 E-value=9.5e-07 Score=66.79 Aligned_cols=62 Identities=23% Similarity=0.364 Sum_probs=41.6
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|++++|.+.+..+. .+..+++|++|++++|.+. .+|..+..+++|++|++++|++++
T Consensus 216 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 216 NNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp TTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCCEEECCCCcCceeChh-hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 3556666666666643332 4666777777777777777 677777777777777777777654
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.31 E-value=3.1e-07 Score=75.48 Aligned_cols=73 Identities=22% Similarity=0.296 Sum_probs=46.3
Q ss_pred CCCCCCCC-----Ccccc-ccCCCCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEe
Q 043483 58 PHNTSDHC-----GWVGI-TCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLD 131 (140)
Q Consensus 58 w~~~~~~C-----~w~gv-~C~~~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ 131 (140)
|..+.++| .|.|+ .|.. ++++.|+|+++++.+ +|. .+ +++|++|++++|.++ .+| ..+++|++|+
T Consensus 36 W~~~~~~~~~~~~~~~~l~~C~~-~~L~~L~Ls~n~L~~-lp~-~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~ 106 (571)
T 3cvr_A 36 WEKQALPGENRNEAVSLLKECLI-NQFSELQLNRLNLSS-LPD-NL--PPQITVLEITQNALI-SLP---ELPASLEYLD 106 (571)
T ss_dssp HHTTCCTTCCHHHHHHHHHHHHH-TTCSEEECCSSCCSC-CCS-CC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred HhccCCccccccchhhhcccccc-CCccEEEeCCCCCCc-cCH-hH--cCCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence 43355667 68998 6753 578888888888876 554 22 255666666666666 455 3455666666
Q ss_pred CcCCcCcC
Q 043483 132 LDRNNLSG 139 (140)
Q Consensus 132 ls~N~lsG 139 (140)
+++|+|++
T Consensus 107 Ls~N~l~~ 114 (571)
T 3cvr_A 107 ACDNRLST 114 (571)
T ss_dssp CCSSCCSC
T ss_pred ccCCCCCC
Confidence 66665553
No 90
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.31 E-value=1.1e-06 Score=67.02 Aligned_cols=64 Identities=30% Similarity=0.275 Sum_probs=50.5
Q ss_pred CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
..+++.|++++|.+.+..+. .+.++++|++|++++|.+++..+..++++++|++|++++|++++
T Consensus 75 l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEED-SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138 (353)
T ss_dssp CTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS
T ss_pred CCCCCEEECCCCccCccCHh-hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc
Confidence 35788999999988865444 68888999999999999886444448888999999998888764
No 91
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.30 E-value=7.3e-07 Score=67.57 Aligned_cols=62 Identities=27% Similarity=0.432 Sum_probs=45.5
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|++++|.+.+..+. .+..+++|++|++++|.+. .+|..+.++++|++|++++|++++
T Consensus 217 ~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 217 SKLYRLGLGHNQIRMIENG-SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp TTCSCCBCCSSCCCCCCTT-GGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred CCCCEEECCCCcCCcCChh-HhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence 3566667777776654333 5777888888888888887 788778888888888888887764
No 92
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.28 E-value=8.3e-07 Score=75.38 Aligned_cols=63 Identities=27% Similarity=0.270 Sum_probs=43.1
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchh--hcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQ--IGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~--~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|+|++|.+.+..|. .+.++++|++|++++|.+.+.+|+. ++++++|++|++++|.+++
T Consensus 73 ~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~ 137 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLHPD-AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137 (844)
T ss_dssp TTCCEEECTTCCCCEECTT-SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC
T ss_pred CCCCEEECCCCcCcccCHh-HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc
Confidence 4567777777777655454 5777777777777777777666654 6777777777777776654
No 93
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.28 E-value=9.6e-07 Score=70.95 Aligned_cols=63 Identities=27% Similarity=0.373 Sum_probs=47.6
Q ss_pred CCeeEEecCCCCCc-cccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIK-GELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~-g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|++++|.+. +.+|. .+..+++|++|++++|.+.+..|..+.++++|++|++++|++++
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp TTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CcCcEEECcCCcCccccchh-hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence 35677777777776 45554 57778888888888888887777778888888888888887765
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.28 E-value=8e-07 Score=62.73 Aligned_cols=62 Identities=19% Similarity=0.342 Sum_probs=44.3
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|++++|.+.+..+. .+..+++|++|++++|.+.+.+| .+..+++|++|++++|.+++
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp TTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred CCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC
Confidence 4678888888888765444 57777778888888777444566 47777777777777777654
No 95
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.27 E-value=8.3e-07 Score=61.57 Aligned_cols=59 Identities=24% Similarity=0.317 Sum_probs=49.4
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchh-hcCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQ-IGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~-~~~l~~L~~L~ls~N~ls 138 (140)
.+++.|++++|.+.+. . .+..+++|++|++++|.+++ +|+. +..+++|++|++++|.++
T Consensus 42 ~~L~~L~Ls~N~l~~~--~-~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~ 101 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--D-GFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSLV 101 (176)
T ss_dssp TCCSEEECCSSCCCEE--C-CCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEEECCSCCCC
T ss_pred CCCCEEECCCCCCCcc--c-ccccCCCCCEEECCCCcccc-cCcchhhcCCCCCEEECCCCcCC
Confidence 3789999999999864 3 68889999999999999995 4544 589999999999999885
No 96
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.25 E-value=2e-06 Score=66.47 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=25.3
Q ss_pred eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483 78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l 137 (140)
++.|+++++.+.+..+. .+..+++|++|++++|.+.+..|..++++++|++|++++|.+
T Consensus 71 L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 129 (390)
T 3o6n_A 71 VELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129 (390)
T ss_dssp CSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEECCCCcccccChh-hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCcc
Confidence 34444444444322111 344444444444444444443333444444444444444443
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.25 E-value=9.9e-07 Score=66.36 Aligned_cols=59 Identities=20% Similarity=0.329 Sum_probs=28.8
Q ss_pred CeeEEecCCCCCccccCCccCCCC---CCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCF---PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l---~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
+++.|+|++|.+.+..|. .+..+ ++|++|++++|.++ .+|..+. ++|++|++++|+++|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNP-SAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp CCSSEECTTSCCCCCCCS-CCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred CCCEEECCCCCCCccchh-hHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence 445555555555544332 23333 45555555555555 4454432 455555555555544
No 98
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.25 E-value=1.7e-06 Score=68.50 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=38.3
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
+++.|+|++|.+.+..+. .+..+++|++|++++|.+.+..|..+.++++|++|++++|++++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGS-MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp TCCEEECCSSCCCEECTT-SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred ccCeeECCCCcCCccChh-hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 456666666666533222 46666666666666666666666666666666666666666653
No 99
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.25 E-value=4e-07 Score=68.80 Aligned_cols=59 Identities=27% Similarity=0.443 Sum_probs=31.4
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
+++.|+|++|.+.+..+. .+..+++|++|++++|.+.+..| +..+++|++|++++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp GCSEEECTTSCCCCCCHH-HHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE
T ss_pred CCCEEECcCCccCcCCHH-HhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc
Confidence 455555555555543222 35555555555555555554433 555555555555555543
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.24 E-value=6.8e-07 Score=67.27 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=19.9
Q ss_pred CCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483 99 CFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 99 ~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l 137 (140)
.+++|++|++++|.+.+..|..++++++|++|++++|++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 181 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPG 181 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTT
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCC
Confidence 344555555555555444444455555555555555544
No 101
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.23 E-value=1.7e-06 Score=65.26 Aligned_cols=63 Identities=27% Similarity=0.315 Sum_probs=43.3
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhh-cCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~-~~l~~L~~L~ls~N~lsG 139 (140)
..++.|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++
T Consensus 120 ~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp SSCEEEECCSSCCCSGGGB-CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCCEEECCCCCCCCccch-hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 3566777777777653332 57777788888888888877666665 367777777777777653
No 102
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.22 E-value=2.2e-06 Score=70.11 Aligned_cols=63 Identities=29% Similarity=0.320 Sum_probs=41.9
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|+|++|.+.+ +|+..+..+++|++|++++|.+.+..|..++++++|++|++++|.+++
T Consensus 123 ~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 123 PLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp TTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCCCEEEeeCCCCCC-CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 356666666666663 333235677777777777777777666667777777777777777654
No 103
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.19 E-value=2.6e-06 Score=70.11 Aligned_cols=62 Identities=32% Similarity=0.362 Sum_probs=33.8
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
+++.|+|++|.+.+..+. .+.++++|++|++++|.+.+..|..++++++|++|++++|.+++
T Consensus 98 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp TCSEEECCSSCCCCCCSC-TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred CCCEEECCCCccCccChh-HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence 455555555555432222 45555666666666666655555555556666666666555543
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.18 E-value=1.2e-06 Score=67.09 Aligned_cols=74 Identities=22% Similarity=0.324 Sum_probs=50.4
Q ss_pred CCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccch-hhcCCCCCCE-E
Q 043483 63 DHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILS-QIGSLSNLKY-L 130 (140)
Q Consensus 63 ~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~-~~~~l~~L~~-L 130 (140)
..|.+..|.|... ..++.|+|++|.|+ .+|+-.|.++++|++|+|++|.+.+.+|+ .|.++++|+. +
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 3477888899531 36889999999988 45554688899999999999888766664 3455554443 3
Q ss_pred eCcCCcC
Q 043483 131 DLDRNNL 137 (140)
Q Consensus 131 ~ls~N~l 137 (140)
+++.|++
T Consensus 86 ~~~~N~l 92 (350)
T 4ay9_X 86 IEKANNL 92 (350)
T ss_dssp EEEETTC
T ss_pred cccCCcc
Confidence 3333443
No 105
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.16 E-value=1.5e-06 Score=65.10 Aligned_cols=61 Identities=25% Similarity=0.416 Sum_probs=49.9
Q ss_pred CCeeEEecCCCCCcc--ccCCccCCCCCCCcEEEccCCccccccchhhcCCC--CCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKG--ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLS--NLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g--~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~--~L~~L~ls~N~lsG 139 (140)
.+++.|+|++|.|.+ .++. .+..+++|+.|+|++|.+.+. .++..+. +|++|+|++|.+++
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 579999999999997 3443 467899999999999999975 3344444 99999999999975
No 106
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.16 E-value=4.3e-06 Score=64.56 Aligned_cols=63 Identities=29% Similarity=0.319 Sum_probs=43.2
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|+|++|.+. .+|...+..+++|++|++++|.+.+..|..+.++++|++|++++|++++
T Consensus 117 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 35666777777666 3443235677777777777777776666667777777777777777654
No 107
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.14 E-value=1.4e-06 Score=63.00 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=43.2
Q ss_pred CCeeEEecCCCC-CccccCCccCCCCCCCcEEEccC-CccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESK-IKGELGRLNFSCFPNLQYLDLSN-NNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~-l~g~l~~~~l~~l~~L~~L~l~~-n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|++++|. +. .+++..+..+++|++|++++ |.+++..|..+.++++|++|++++|.+++
T Consensus 55 ~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~ 119 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM 119 (239)
T ss_dssp TTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS
T ss_pred CCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc
Confidence 467777777776 55 34433567777777777777 77775444567777777777777776654
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.12 E-value=4.9e-06 Score=61.48 Aligned_cols=58 Identities=22% Similarity=0.309 Sum_probs=39.4
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|+|++|.+.+. + ++..+++|++|++++|.+.+ +|.. .. ++|++|++++|++++
T Consensus 63 ~~L~~L~L~~N~i~~~-~--~l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~ 120 (263)
T 1xeu_A 63 TNLKELHLSHNQISDL-S--PLKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD 120 (263)
T ss_dssp TTCCEEECCSSCCCCC-G--GGTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB
T ss_pred CCCCEEECCCCccCCC-h--hhccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC
Confidence 4677777777777743 2 26777777777777777775 4442 23 777777777777764
No 109
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.06 E-value=5.6e-06 Score=62.68 Aligned_cols=61 Identities=25% Similarity=0.379 Sum_probs=43.6
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.+++++|.+.+. + .+..+++|++|++++|.+.+..|..++++++|++|++++|.+++
T Consensus 265 ~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI-S--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp TTCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CCcCEEEccCCccCCC-h--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 3566666666666542 2 36677778888888888877777777888888888888887765
No 110
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.03 E-value=2.4e-06 Score=64.77 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=51.2
Q ss_pred CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
..+++.+++++|.+.+..+. .+..+++|++|++++|.+.+..| +..+++|++|++++|.++
T Consensus 286 l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCCCCEEECcCCcCCCcChh-HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 35799999999999876554 58899999999999999997666 899999999999999985
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.03 E-value=1.1e-05 Score=60.47 Aligned_cols=58 Identities=26% Similarity=0.387 Sum_probs=28.0
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.+++.|++++|.+.+. + ++..+++|++|++++|.+.+ +| .+.++++|++|++++|+++
T Consensus 68 ~~L~~L~L~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~ 125 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDI-K--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS 125 (291)
T ss_dssp TTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC
T ss_pred CCCCEEEccCCccCCC-c--ccccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCC
Confidence 3455666666655532 1 14455555555555555543 22 2444445555555444443
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.01 E-value=9.4e-06 Score=60.75 Aligned_cols=40 Identities=30% Similarity=0.500 Sum_probs=20.6
Q ss_pred CCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 97 FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 97 l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
+..+++|+.|++++|.+.+..| +..+++|++|++++|.++
T Consensus 152 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 4445555555555555554322 555555555555555544
No 113
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.99 E-value=1.9e-06 Score=64.95 Aligned_cols=58 Identities=31% Similarity=0.348 Sum_probs=32.4
Q ss_pred CeeEEecCCCCCccc-cCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCC
Q 043483 77 RITDIGLAESKIKGE-LGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRN 135 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~-l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N 135 (140)
+++.|+++++.+.+. ++. .+..+++|++|++++|.+.+.+|..++++++|++|++++|
T Consensus 94 ~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp CCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred CCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 455555555555433 332 3455566666666666665555555666666666666655
No 114
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.98 E-value=1.9e-05 Score=62.80 Aligned_cols=56 Identities=25% Similarity=0.371 Sum_probs=39.2
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.++.+++++|.+.+. ++..+++|++|++++|++++ +| ++.+++|++|++++|+++|
T Consensus 192 ~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 192 LLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp TCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred CCCEEECcCCcCCee----ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 455555666555532 46777778888888888876 66 6777888888888887765
No 115
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.98 E-value=1.4e-05 Score=66.28 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=46.7
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|+|++|.|. .+|. .+++|++|++++|.++ .+|..+.++++|+.|+|++|.++|
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred CcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence 35666666666665 2332 5678999999999999 889999999999999999999876
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.98 E-value=1.3e-05 Score=59.22 Aligned_cols=57 Identities=28% Similarity=0.508 Sum_probs=33.8
Q ss_pred eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
++.|+|++|.+.+ ++ .+..+++|+.|++++|++++ +| .+..+++|++|++++|++++
T Consensus 108 L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 108 LSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred ccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcc
Confidence 4444444444443 11 35666677777777777764 33 46667777777777776654
No 117
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.97 E-value=2.9e-07 Score=65.09 Aligned_cols=60 Identities=20% Similarity=0.271 Sum_probs=44.7
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..+++|++|++++|++++
T Consensus 48 ~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS 107 (198)
T ss_dssp TTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC
T ss_pred CCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc
Confidence 467888888888775 44 5677778888888888877 577766777777777777777664
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.96 E-value=2.2e-05 Score=62.43 Aligned_cols=56 Identities=23% Similarity=0.395 Sum_probs=26.9
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
+++.|++++|.+.+. +++.+++|++|++++|.+.+ +| ++++++|++|++++|++++
T Consensus 86 ~L~~L~Ls~N~l~~~----~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~ 141 (457)
T 3bz5_A 86 NLTYLACDSNKLTNL----DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE 141 (457)
T ss_dssp TCSEEECCSSCCSCC----CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC
T ss_pred CCCEEECcCCCCcee----ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce
Confidence 344444444444431 24455555555555555554 33 4555555555555555443
No 119
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.94 E-value=1.3e-05 Score=66.25 Aligned_cols=40 Identities=30% Similarity=0.500 Sum_probs=21.0
Q ss_pred CCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 97 FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 97 l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|+++
T Consensus 149 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 149 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 4445555555555555554333 555555555555555544
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.93 E-value=2.9e-07 Score=73.30 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=29.1
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCC-------------CEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNL-------------KYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L-------------~~L~ls~N~lsG 139 (140)
.+++.++++++.+ |.+|. .++++++|++|++++|.+.|.+|+.++++++| ++|++++|.++|
T Consensus 11 ~~L~~L~l~~n~l-~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred ccchhhhcccCch-hhCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 5678888888888 77876 68888888888888888888888888776643 666666666554
No 121
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.93 E-value=1.1e-05 Score=60.67 Aligned_cols=62 Identities=23% Similarity=0.202 Sum_probs=53.0
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccc-cchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGS-ILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~-iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.++++++.+.+..+. +..+++|++|++++|.+.+. +|..+.++++|++|++++|.+++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~ 132 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD 132 (336)
T ss_dssp TTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH
T ss_pred ccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH
Confidence 4678888888888766543 67899999999999999977 89899999999999999998864
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.91 E-value=7.8e-07 Score=62.84 Aligned_cols=61 Identities=23% Similarity=0.383 Sum_probs=51.6
Q ss_pred CCeeEEecCCCCCccccCCc-----cCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGELGRL-----NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~-----~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
..++.++++.+.+.|.+|.+ .+..+++|++|++++|.+.+ +| .+.++++|++|++++|.++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~ 83 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK 83 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc
Confidence 46677777778888776642 37889999999999999997 88 8999999999999999876
No 123
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.88 E-value=2.1e-05 Score=59.17 Aligned_cols=56 Identities=27% Similarity=0.427 Sum_probs=23.5
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l 137 (140)
+++.|++++|.+.+. + ++..+++|++|++++|.+.+ +|+ +.++++|+.|++++|.+
T Consensus 130 ~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 130 NLQVLYLDLNQITNI-S--PLAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp TCCEEECCSSCCCCC-G--GGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred CCCEEECCCCccCcC-c--cccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCcc
Confidence 455555555555432 1 13444444444444444442 222 34444444444444433
No 124
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.88 E-value=2.3e-05 Score=58.98 Aligned_cols=59 Identities=25% Similarity=0.438 Sum_probs=39.9
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|++++|.+.+ ++ ++..+++|++|++++|.+.+. |+ +.++++|++|++++|.+++
T Consensus 107 ~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 107 QSIKTLDLTSTQITD-VT--PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp TTCCEEECTTSCCCC-CG--GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC
T ss_pred CCCCEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC
Confidence 356777777777764 22 367777777777777777753 33 6777777777777777654
No 125
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.86 E-value=2.7e-05 Score=61.61 Aligned_cols=59 Identities=19% Similarity=0.314 Sum_probs=40.8
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|+|+++.+.+. + ++..+++|++|++++|.+.+..| ++++++|++|++++|.+++
T Consensus 68 ~~L~~L~Ls~n~l~~~-~--~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 126 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDI-T--PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD 126 (466)
T ss_dssp TTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred cCCCEEECCCCccCCc-h--hhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC
Confidence 4677888888877743 2 26777777777777777775433 6777777777777776654
No 126
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.82 E-value=9.9e-06 Score=64.42 Aligned_cols=40 Identities=33% Similarity=0.401 Sum_probs=17.6
Q ss_pred CCCCcEEEccCCcccc--ccchhhcCC-------------CCCCEEeCcCCcCcC
Q 043483 100 FPNLQYLDLSNNNLSG--SILSQIGSL-------------SNLKYLDLDRNNLSG 139 (140)
Q Consensus 100 l~~L~~L~l~~n~l~G--~iP~~~~~l-------------~~L~~L~ls~N~lsG 139 (140)
+++|++|++++|.+.| .+|..++.+ ++|++||+++|+++|
T Consensus 356 l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 356 PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred hhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 5667777777777777 677766666 667777777777765
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.82 E-value=4e-06 Score=69.53 Aligned_cols=35 Identities=31% Similarity=0.360 Sum_probs=19.4
Q ss_pred CCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 100 l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
+++|++|++++|.++ .+|. .+++|++|++++|.++
T Consensus 80 l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 80 PPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp CTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred CCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence 455666666666655 3444 4455555555555554
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.79 E-value=1e-05 Score=62.34 Aligned_cols=61 Identities=21% Similarity=0.344 Sum_probs=28.1
Q ss_pred CeeEEecCCCCCc----cccCCccCCCCCCCcEEEccCCccccc----cchhh--cCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIK----GELGRLNFSCFPNLQYLDLSNNNLSGS----ILSQI--GSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~----g~l~~~~l~~l~~L~~L~l~~n~l~G~----iP~~~--~~l~~L~~L~ls~N~ls 138 (140)
+++.|+|++|.++ +.++. .+..+++|++|++++|.+.+. +|..+ +++++|++|+|++|.++
T Consensus 217 ~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 217 ELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp TCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred CccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 3444444444443 22222 244455555555555555443 34444 22555555555555543
No 129
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.78 E-value=3.4e-05 Score=61.03 Aligned_cols=18 Identities=28% Similarity=0.643 Sum_probs=7.9
Q ss_pred hcCCCCCCEEeCcCCcCc
Q 043483 121 IGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 121 ~~~l~~L~~L~ls~N~ls 138 (140)
+.++++|++|++++|+++
T Consensus 349 l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQIS 366 (466)
T ss_dssp GTTCTTCCEEECCSSCCC
T ss_pred hccCCCCCEEeCCCCccC
Confidence 344444444444444443
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.77 E-value=8.9e-06 Score=62.74 Aligned_cols=63 Identities=22% Similarity=0.361 Sum_probs=37.9
Q ss_pred CCeeEEecCCCCCccc----cCCccC--CCCCCCcEEEccCCcccc----ccchhh-cCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGE----LGRLNF--SCFPNLQYLDLSNNNLSG----SILSQI-GSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~----l~~~~l--~~l~~L~~L~l~~n~l~G----~iP~~~-~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|+|++|.+.+. ++. .+ +.+++|++|++++|.+.+ .+|..+ .++++|++|++++|.+++
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVD-AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHH-HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred CCcCEEECCCCCCchhhHHHHHH-HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 3566666666666543 121 22 346666777777777666 466655 556667777777766664
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.76 E-value=9.2e-06 Score=62.34 Aligned_cols=62 Identities=23% Similarity=0.284 Sum_probs=45.6
Q ss_pred CeeEEecCCCCCccccCCccCCCC-----CCCcEEEccCCccccccchhhc----CC-CCCCEEeCcCCcCcC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCF-----PNLQYLDLSNNNLSGSILSQIG----SL-SNLKYLDLDRNNLSG 139 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l-----~~L~~L~l~~n~l~G~iP~~~~----~l-~~L~~L~ls~N~lsG 139 (140)
+++.|+|++|.+.+..+. .+..+ ++|++|++++|.+++..+..+. .+ ++|++|++++|.+++
T Consensus 52 ~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSD-ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp TCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred ceeEEECcCCCCCHHHHH-HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 788888888888754332 34443 8888899998888877776444 34 788999998888764
No 132
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.75 E-value=2.5e-05 Score=64.17 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=29.5
Q ss_pred cEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 104 QYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 104 ~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
+.|++++|.++ .||..+.++++|++|+|++|.++|
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 78888888887 588888888999999999998875
No 133
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.75 E-value=3.3e-05 Score=63.82 Aligned_cols=59 Identities=24% Similarity=0.377 Sum_probs=49.2
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|+|++|.+.+.. ++..+++|+.|+|++|.+.+ +| .+..+++|+.|+|++|.+++
T Consensus 153 ~~L~~L~Ls~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 153 TKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TTCSEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEEC
T ss_pred CCCCEEECcCCcCCCch---hhccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcC
Confidence 46777777777777543 38899999999999999997 44 59999999999999998875
No 134
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.74 E-value=1.7e-05 Score=59.41 Aligned_cols=42 Identities=38% Similarity=0.490 Sum_probs=38.2
Q ss_pred CCCCCCcEEEccCCcccc--ccchhhcCCCCCCEEeCcCCcCcC
Q 043483 98 SCFPNLQYLDLSNNNLSG--SILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 98 ~~l~~L~~L~l~~n~l~G--~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|++++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 358899999999999998 777888899999999999999986
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.71 E-value=3.2e-05 Score=59.11 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=54.5
Q ss_pred CCCeeEEecCCCCCccccCCccCCCCCCCcE-EEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483 75 EGRITDIGLAESKIKGELGRLNFSCFPNLQY-LDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~-L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
-.+++.|+|++|.+.+.++...|.++++++. +.+..|++....|..+.++++|++|++++|++++
T Consensus 53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccccc
Confidence 3579999999999987777656888988775 6677899997667789999999999999998864
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.67 E-value=1e-05 Score=62.13 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=48.3
Q ss_pred CCeeEEecCCCCCccccCCcc----CCCC-CCCcEEEccCCccccccchhhc----C-CCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLN----FSCF-PNLQYLDLSNNNLSGSILSQIG----S-LSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~----l~~l-~~L~~L~l~~n~l~G~iP~~~~----~-l~~L~~L~ls~N~lsG 139 (140)
..++.|+|++|.+.+..+. . +..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSD-ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp TTCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred CCccEEECcCCcCChHHHH-HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 6799999999998864332 2 3344 7899999999999877665543 3 3699999999998874
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.47 E-value=2e-05 Score=61.68 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=43.9
Q ss_pred CCeeEEecCCCCCccccCCccCC-----CCCCCcEEEccCCcccc----ccchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGELGRLNFS-----CFPNLQYLDLSNNNLSG----SILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~-----~l~~L~~L~l~~n~l~G----~iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
..++.|++++|.+.+..+. .+. ..++|++|++++|.+++ .+|..+.++++|++|++++|++++
T Consensus 341 ~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 341 RFLLELQISNNRLEDAGVR-ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp SSCCEEECCSSBCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CCccEEEccCCccccccHH-HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 3566666666666532111 121 25688888888888886 788888888889999998888764
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.24 E-value=9.3e-05 Score=57.85 Aligned_cols=62 Identities=29% Similarity=0.410 Sum_probs=44.7
Q ss_pred CeeEEecCCCCCcc----ccCCccCCCCCCCcEEEccCCccccccchhhc-----CCCCCCEEeCcCCcCcC
Q 043483 77 RITDIGLAESKIKG----ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIG-----SLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 77 ~v~~L~L~~~~l~g----~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~-----~l~~L~~L~ls~N~lsG 139 (140)
+++.|+|++|.+.. .++. .+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred ceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 68888888888773 3333 477888888888888888765554433 25678888888888764
No 139
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.20 E-value=0.00092 Score=44.42 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=40.4
Q ss_pred EEecCCCCCc-cccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 80 DIGLAESKIK-GELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 80 ~L~L~~~~l~-g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.++.++++|+ ..+|. .--++|+.|+|++|+|+..-+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~---~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT---AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCS---CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCC---CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566677765 23332 22246899999999999543445788999999999999764
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.16 E-value=0.00012 Score=59.05 Aligned_cols=63 Identities=24% Similarity=0.188 Sum_probs=48.3
Q ss_pred CCeeEEecCCCCCccc-cCCccCCCCCCCcEEEccCCccccc-cchhhcCCCCCCEEeCcCCcCcC
Q 043483 76 GRITDIGLAESKIKGE-LGRLNFSCFPNLQYLDLSNNNLSGS-ILSQIGSLSNLKYLDLDRNNLSG 139 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~-l~~~~l~~l~~L~~L~l~~n~l~G~-iP~~~~~l~~L~~L~ls~N~lsG 139 (140)
.+++.|+++++++++. ++. .+..+++|++|++++|.+++. ++..+.++++|++|++++|++++
T Consensus 463 ~~L~~L~L~~n~l~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 463 PNVRWMLLGYVGESDEGLME-FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp TTCCEEEECSCCSSHHHHHH-HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred ccceEeeccCCCCCHHHHHH-HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 4588888888887752 222 357789999999999998765 44445789999999999999875
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.00 E-value=0.00026 Score=54.93 Aligned_cols=42 Identities=24% Similarity=0.246 Sum_probs=23.6
Q ss_pred CCCCCCCcEEEccCCcccc----ccchhhcCCCCCCEEeCcCCcCc
Q 043483 97 FSCFPNLQYLDLSNNNLSG----SILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 97 l~~l~~L~~L~l~~n~l~G----~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
+...+.|+.|+|++|.++. .++..+...++|++|||++|.++
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 3444566666666666653 23334445566666666666654
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.95 E-value=0.00029 Score=54.67 Aligned_cols=61 Identities=18% Similarity=0.264 Sum_probs=34.4
Q ss_pred CeeEEecCCCCCccc----cCCccCCCCCCCcEEEccCCcccc----ccchhhcCCCCCCEEeCcCCcCc
Q 043483 77 RITDIGLAESKIKGE----LGRLNFSCFPNLQYLDLSNNNLSG----SILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~----l~~~~l~~l~~L~~L~l~~n~l~G----~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.++.|+|++|.+... ++. .+...+.|++|+|++|.+.. .++..+...++|++|+|++|.++
T Consensus 156 ~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 156 QITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp CCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred ccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 455555555555321 111 13455667777777777653 23445566667777777777664
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.48 E-value=0.0013 Score=45.99 Aligned_cols=62 Identities=18% Similarity=0.293 Sum_probs=30.4
Q ss_pred CCeeEEecCCCCCccc----cCCccCCCCCCCcEEEccCCccccc----cchhhcCCCCCCEEeC--cCCcCc
Q 043483 76 GRITDIGLAESKIKGE----LGRLNFSCFPNLQYLDLSNNNLSGS----ILSQIGSLSNLKYLDL--DRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~----l~~~~l~~l~~L~~L~l~~n~l~G~----iP~~~~~l~~L~~L~l--s~N~ls 138 (140)
..++.|+|++|.+... +.. .+...+.|++|+|++|.+... +...+...+.|++|+| ++|.++
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~-~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CCcCEEECcCCCCChHHHHHHHH-HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 4566666666665421 111 123334555566666555532 3334445555555655 455543
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.36 E-value=0.00073 Score=54.39 Aligned_cols=38 Identities=8% Similarity=0.119 Sum_probs=16.8
Q ss_pred CCCCcEEEccCCccc----cccchhhcCCCCCCEEeCcCCcC
Q 043483 100 FPNLQYLDLSNNNLS----GSILSQIGSLSNLKYLDLDRNNL 137 (140)
Q Consensus 100 l~~L~~L~l~~n~l~----G~iP~~~~~l~~L~~L~ls~N~l 137 (140)
+++|++|++++|.++ +.++..+.++++|++|++++|.+
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 344444444444443 23333334445555555544443
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.15 E-value=0.0019 Score=45.09 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=48.4
Q ss_pred CCeeEEecCCCCCccc----cCCccCCCCCCCcEEEc--cCCccccc----cchhhcCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGE----LGRLNFSCFPNLQYLDL--SNNNLSGS----ILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~----l~~~~l~~l~~L~~L~l--~~n~l~G~----iP~~~~~l~~L~~L~ls~N~ls 138 (140)
..++.|+|++|.+... +.. .+...+.|++|++ ++|.+... +...+...+.|++|++++|.+.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCcCEEECcCCcCCHHHHHHHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4799999999998742 122 3667788999999 88999854 4455667799999999999874
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.12 E-value=0.0096 Score=44.74 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=26.4
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccc-hhhcCCCCCC-EEeCc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSIL-SQIGSLSNLK-YLDLD 133 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP-~~~~~l~~L~-~L~ls 133 (140)
.++.++|++|++. .+|...|.++++|+.+++++| +. .|+ ..|.++++|+ .++++
T Consensus 227 ~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 227 NLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELP 282 (329)
T ss_dssp TCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEEC
T ss_pred CCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEc
Confidence 4556666655554 344434555555555555554 33 222 2344455554 44444
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.98 E-value=0.0012 Score=53.14 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=16.4
Q ss_pred CCCCcEEEccCCccccccchhh-cCCCCCCEEeCcCCcC
Q 043483 100 FPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNL 137 (140)
Q Consensus 100 l~~L~~L~l~~n~l~G~iP~~~-~~l~~L~~L~ls~N~l 137 (140)
+++|++|++++|.+++..+..+ .++++|++|++++|.+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 3444444444444443333322 3344444444444443
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.88 E-value=0.0012 Score=51.13 Aligned_cols=38 Identities=24% Similarity=0.468 Sum_probs=16.6
Q ss_pred CCCCcEEEccCCccccccchhhc---CCCCCCEEeCcCCcC
Q 043483 100 FPNLQYLDLSNNNLSGSILSQIG---SLSNLKYLDLDRNNL 137 (140)
Q Consensus 100 l~~L~~L~l~~n~l~G~iP~~~~---~l~~L~~L~ls~N~l 137 (140)
+++|++|+|.+|.+.+..+..+. .+++|++|+|+.|.+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 44555555554444433332221 244444444444444
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.68 E-value=0.0018 Score=52.06 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=17.2
Q ss_pred CCeeEEecCCCCCccccCCccCC-CCCCCcEEEccCC
Q 043483 76 GRITDIGLAESKIKGELGRLNFS-CFPNLQYLDLSNN 111 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~-~l~~L~~L~l~~n 111 (140)
.+++.|+|+++.+.+.... .+. .+++|++|+++++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp TTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEESC
T ss_pred CCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCCCc
Confidence 4567777777666543211 121 3444444444444
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.67 E-value=0.013 Score=44.05 Aligned_cols=60 Identities=20% Similarity=0.326 Sum_probs=39.6
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCc-EEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQ-YLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~-~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.+++.|+|+++ +. .++...|.++++|+ .+++++ .+.-.-+..|.++++|+.++++.|.++
T Consensus 250 ~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 250 KYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp TTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred CCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 35777777765 44 45555677777787 777776 555333356777778888877766653
No 151
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.84 E-value=0.027 Score=37.18 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=32.3
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccc
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLS 114 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~ 114 (140)
..++.|+|++|.|+ .++...|..+++|+.|+|.+|.+.
T Consensus 31 ~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 36899999999998 465546889999999999999875
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=94.01 E-value=0.036 Score=38.80 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=36.3
Q ss_pred CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCc-cccccchhhcCC----CCCCEEeCcCC
Q 043483 76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNN-LSGSILSQIGSL----SNLKYLDLDRN 135 (140)
Q Consensus 76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~-l~G~iP~~~~~l----~~L~~L~ls~N 135 (140)
-.+++||+++..++.. +-..+..+++|+.|+|+++. ++..-=..+..+ ++|++|+|+++
T Consensus 61 ~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred ceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence 4689999998887532 11136677788888887764 553322334443 35777777664
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=92.91 E-value=0.036 Score=42.79 Aligned_cols=40 Identities=28% Similarity=0.605 Sum_probs=27.2
Q ss_pred CCCCCcEEEccCCccccc----cchhhcCCCCCCEEeCcCCcCc
Q 043483 99 CFPNLQYLDLSNNNLSGS----ILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 99 ~l~~L~~L~l~~n~l~G~----iP~~~~~l~~L~~L~ls~N~ls 138 (140)
.+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 466777888877777653 3444455677788888777764
No 154
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.18 E-value=0.21 Score=35.42 Aligned_cols=60 Identities=18% Similarity=0.245 Sum_probs=34.2
Q ss_pred CCCeeEEecCCCCCccccCCcc----CCCCCCCcEEEccCCccccc----cchhhcCCCCCCEEeCcCC
Q 043483 75 EGRITDIGLAESKIKGELGRLN----FSCFPNLQYLDLSNNNLSGS----ILSQIGSLSNLKYLDLDRN 135 (140)
Q Consensus 75 ~~~v~~L~L~~~~l~g~l~~~~----l~~l~~L~~L~l~~n~l~G~----iP~~~~~l~~L~~L~ls~N 135 (140)
...++.|+|++|.+...- ... +..=+.|++|+|++|.+... |-..+..-+.|++|+|++|
T Consensus 69 N~~L~~L~L~~n~igd~g-a~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSE-ARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSCCCEEECTTSCCBHHH-HTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCCcCEEEccCCCCChHH-HHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 346777777777765211 101 22335677777777777632 2233444556777777654
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=90.16 E-value=0.74 Score=35.71 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=20.4
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccc
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLS 114 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~ 114 (140)
.++.+.+.. .+. .++.-.|.++++|+.+++++|.+.
T Consensus 158 ~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~ 193 (401)
T 4fdw_A 158 TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKIT 193 (401)
T ss_dssp CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCS
T ss_pred CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcce
Confidence 355555543 333 334335677777777777766555
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=88.00 E-value=0.91 Score=35.22 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=18.4
Q ss_pred cCCCCCCCcEEEccCCccc----cccc-hhhcCCCCCCEEeCc
Q 043483 96 NFSCFPNLQYLDLSNNNLS----GSIL-SQIGSLSNLKYLDLD 133 (140)
Q Consensus 96 ~l~~l~~L~~L~l~~n~l~----G~iP-~~~~~l~~L~~L~ls 133 (140)
.|.++++|+.+++.+|.+. ..|+ ..|.++++|+.+++.
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 4555566666665555443 0122 234455555555544
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=85.42 E-value=0.86 Score=32.23 Aligned_cols=39 Identities=21% Similarity=0.409 Sum_probs=18.8
Q ss_pred CCCCcEEEccCCcccc----ccchhhcCCCCCCEEeCcCCcCc
Q 043483 100 FPNLQYLDLSNNNLSG----SILSQIGSLSNLKYLDLDRNNLS 138 (140)
Q Consensus 100 l~~L~~L~l~~n~l~G----~iP~~~~~l~~L~~L~ls~N~ls 138 (140)
=+.|+.|+|++|.+.. .|-..+..-+.|++|+|++|.++
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3455555555555542 12222333445555555555553
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=85.33 E-value=0.73 Score=32.02 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=29.3
Q ss_pred CCCcEEEccCCccccccchhhcCCCCCCEEeCcCCc
Q 043483 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNN 136 (140)
Q Consensus 101 ~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ 136 (140)
.+|+.||++++.++..=-..+.++++|+.|+|+++.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 369999999999875433457899999999999874
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=85.25 E-value=1.1 Score=33.79 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=15.6
Q ss_pred CCCCCCCcEEEccCCccccccc-hhhcCCCCCCEEeCc
Q 043483 97 FSCFPNLQYLDLSNNNLSGSIL-SQIGSLSNLKYLDLD 133 (140)
Q Consensus 97 l~~l~~L~~L~l~~n~l~G~iP-~~~~~l~~L~~L~ls 133 (140)
|..+++|+.+.+.++.+. .|+ ..|.++++|+.+++.
T Consensus 282 F~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECC
T ss_pred cccccccccccccccccc-eehhhhhcCCCCCCEEEcC
Confidence 444444554444444443 222 234444444444443
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=84.96 E-value=1.1 Score=34.23 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=20.4
Q ss_pred cCCCCCCCcEEEccCCccccccc-hhhcCCCCCCEEeCcC
Q 043483 96 NFSCFPNLQYLDLSNNNLSGSIL-SQIGSLSNLKYLDLDR 134 (140)
Q Consensus 96 ~l~~l~~L~~L~l~~n~l~G~iP-~~~~~l~~L~~L~ls~ 134 (140)
.|.++++|+.+++..| +. .|+ .+|.++++|+.++++.
T Consensus 338 aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 338 SFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEG
T ss_pred hccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECC
Confidence 4556666666666544 33 233 2456666666666644
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=83.40 E-value=2.5 Score=32.14 Aligned_cols=43 Identities=12% Similarity=0.230 Sum_probs=27.7
Q ss_pred cCCccCCCCCCCcEEEccCCccccccc-hhhcCCCCCCEEeCcCCc
Q 043483 92 LGRLNFSCFPNLQYLDLSNNNLSGSIL-SQIGSLSNLKYLDLDRNN 136 (140)
Q Consensus 92 l~~~~l~~l~~L~~L~l~~n~l~G~iP-~~~~~l~~L~~L~ls~N~ 136 (140)
++...|.++++|+.+.+..+ ++ .|+ .+|.++++|+.+++..|.
T Consensus 325 I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 325 ILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred ehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence 34445777777777777644 44 343 357778888888776653
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=79.55 E-value=3.9 Score=30.71 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=38.1
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccc-hhhcCCCCCCEEeCcCC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSIL-SQIGSLSNLKYLDLDRN 135 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP-~~~~~l~~L~~L~ls~N 135 (140)
.++.+.+.++.+. .++...|.++++|+.+.+..+ ++ .|+ .+|.++++|+.+.+..+
T Consensus 287 ~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 287 NLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccc-eehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence 4556666555554 445546888899999998754 54 344 36888888988887654
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=74.11 E-value=5.2 Score=30.32 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=30.9
Q ss_pred cCCccCCCCCCCcEEEccCCccccccc-hhhcCCCCCCEEeCcCC
Q 043483 92 LGRLNFSCFPNLQYLDLSNNNLSGSIL-SQIGSLSNLKYLDLDRN 135 (140)
Q Consensus 92 l~~~~l~~l~~L~~L~l~~n~l~G~iP-~~~~~l~~L~~L~ls~N 135 (140)
++...|.++++|+.+++.++ +. .|+ .+|.++++|+.+++..|
T Consensus 311 I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 311 IGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT
T ss_pred echhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc
Confidence 44445888889999988754 55 454 46888999999988765
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=68.16 E-value=9.9 Score=28.75 Aligned_cols=41 Identities=15% Similarity=0.298 Sum_probs=25.1
Q ss_pred CCccCCCCCCCcEEEccCCccccccc-hhhcCCCCCCEEeCcCC
Q 043483 93 GRLNFSCFPNLQYLDLSNNNLSGSIL-SQIGSLSNLKYLDLDRN 135 (140)
Q Consensus 93 ~~~~l~~l~~L~~L~l~~n~l~G~iP-~~~~~l~~L~~L~ls~N 135 (140)
+...|.++.+|+.+++..+ ++ .|. .+|.++++|+.+.+..+
T Consensus 303 ~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 303 PESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS 344 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT
T ss_pred CceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc
Confidence 3334666777777777643 43 233 35777777877777543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=38.08 E-value=59 Score=19.77 Aligned_cols=32 Identities=28% Similarity=0.195 Sum_probs=16.7
Q ss_pred CeeEEecCCCCCccccCCccCCCCCCCcEEEccC
Q 043483 77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSN 110 (140)
Q Consensus 77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~ 110 (140)
.++++.+..+ +. .|+...|.++.+|+.+.+..
T Consensus 21 ~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 21 VIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred CCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 4455554432 22 33444567777777766644
No 166
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=21.98 E-value=30 Score=15.12 Aligned_cols=10 Identities=30% Similarity=1.106 Sum_probs=7.2
Q ss_pred CCCCCccccc
Q 043483 62 SDHCGWVGIT 71 (140)
Q Consensus 62 ~~~C~w~gv~ 71 (140)
...|+|.|..
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 3569998854
Done!