BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043484
(246 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 70/155 (45%), Gaps = 32/155 (20%)
Query: 123 YPYTTMAHMKEVRKLGETLFGILSVALGLEPEYL-KGMGCSNGY--DFVYNYYPHCPQPK 179
Y T + K +R L +F LSV LGLEP+ L K +G NYYP CPQP+
Sbjct: 164 YIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPE 223
Query: 180 LTLGAQGNSDPSFLTILLQDQIRGLQ--------------------------VLSNDKLK 213
L LG + ++D S LT +L + + GLQ +LSN K K
Sbjct: 224 LALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYK 283
Query: 214 SVDHRVVANKHASPRVSVACFFA--GHATTVSPLP 246
S+ HR + NK R+S A F + PLP
Sbjct: 284 SILHRGLVNKEKV-RISWAVFCEPPKDKIVLKPLP 317
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 15 VKGLVDAGVVNIPRIFIQPSEEL 37
V+ L +G+++IP+ +I+P EEL
Sbjct: 6 VESLAKSGIISIPKEYIRPKEEL 28
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 70/155 (45%), Gaps = 32/155 (20%)
Query: 123 YPYTTMAHMKEVRKLGETLFGILSVALGLEPEYL-KGMGCSNGY--DFVYNYYPHCPQPK 179
Y T + K +R L +F LSV LGLEP+ L K +G NYYP CPQP+
Sbjct: 165 YIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPE 224
Query: 180 LTLGAQGNSDPSFLTILLQDQIRGLQ--------------------------VLSNDKLK 213
L LG + ++D S LT +L + + GLQ +LSN K K
Sbjct: 225 LALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYK 284
Query: 214 SVDHRVVANKHASPRVSVACFFA--GHATTVSPLP 246
S+ HR + NK R+S A F + PLP
Sbjct: 285 SILHRGLVNKEKV-RISWAVFCEPPKDKIVLKPLP 318
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 15 VKGLVDAGVVNIPRIFIQPSEEL 37
V+ L +G+++IP+ +I+P EEL
Sbjct: 7 VESLAKSGIISIPKEYIRPKEEL 29
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 70/155 (45%), Gaps = 32/155 (20%)
Query: 123 YPYTTMAHMKEVRKLGETLFGILSVALGLEPEYL-KGMGCSNGY--DFVYNYYPHCPQPK 179
Y T + K +R L +F LSV LGLEP+ L K +G NYYP CPQP+
Sbjct: 165 YIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPE 224
Query: 180 LTLGAQGNSDPSFLTILLQDQIRGLQ--------------------------VLSNDKLK 213
L LG + ++D S LT +L + + GLQ +LSN K K
Sbjct: 225 LALGVEAHTDVSALTFILHNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYK 284
Query: 214 SVDHRVVANKHASPRVSVACFFA--GHATTVSPLP 246
S+ HR + NK R+S A F + PLP
Sbjct: 285 SILHRGLVNKEKV-RISWAVFCEPPKDKIVLKPLP 318
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 15 VKGLVDAGVVNIPRIFIQPSEEL 37
V+ L +G+++IP+ +I+P EEL
Sbjct: 7 VESLAKSGIISIPKEYIRPKEEL 29
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 67/146 (45%), Gaps = 32/146 (21%)
Query: 132 KEVRKLGETLFGILSVALGLEPEYLK-GMGCSNGYDF--VYNYYPHCPQPKLTLGAQGNS 188
K + KL E L +L LGLE YLK S G +F + YP CP+P L G + ++
Sbjct: 119 KRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHT 178
Query: 189 DPSFLTILLQD-QIRGLQ--------------------------VLSNDKLKSVDHRVVA 221
D + +L QD ++ GLQ V++N K KSV HRV+A
Sbjct: 179 DAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIA 238
Query: 222 NKHASPRVSVACFF-AGHATTVSPLP 246
K + R S+A F+ G + P P
Sbjct: 239 QKDGA-RXSLASFYNPGSDAVIYPAP 263
>pdb|3LJ5|A Chain A, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|B Chain B, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|C Chain C, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|D Chain D, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|E Chain E, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|F Chain F, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|G Chain G, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|H Chain H, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|I Chain I, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|J Chain J, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|K Chain K, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|L Chain L, Full Length Bacteriophage P22 Portal Protein
Length = 725
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 60 HNKLEDIVDQFYTRY-PTRSIKFNCNFDLYFSRIASWRDMLGIY 102
N+LE I+ +F + + + DL+FSR++ W D L Y
Sbjct: 5 ENRLESILSRFDADWTASDEARREAKNDLFFSRVSQWDDWLSQY 48
>pdb|2DEB|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Space Group C2221
pdb|2DEB|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Space Group C2221
pdb|2FYO|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Space Group P43212
Length = 653
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 6 KGFDDTKVGVKGLVDAGVVNIPRIFIQPSEELAQELITHWSNLQVLVVDLGGIRHNKLED 65
+GFD ++ L A +N+P +++ P+ + I S L V LGG
Sbjct: 545 QGFDRHLYALRYLATARGLNLPELYLDPAYQQXNHNILSTSTLNSPAVSLGGF----APV 600
Query: 66 IVDQFYTRYPTRSIKFNCNFDLYFSRIA 93
+ D F Y CN Y R A
Sbjct: 601 VPDGFGIAYAVHDDWIGCNVSSYSGRNA 628
>pdb|2FW3|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Complex With Antidiabetic Drug St1326
pdb|2RCU|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Complex With R-3-(Hexadecanoylamino)-4-
(Trimethylazaniumyl)butanoate
pdb|2RCU|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Complex With R-3-(Hexadecanoylamino)-4-
(Trimethylazaniumyl)butanoate
Length = 653
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 6 KGFDDTKVGVKGLVDAGVVNIPRIFIQPSEELAQELITHWSNLQVLVVDLGGIRHNKLED 65
+GFD ++ L A +N+P +++ P+ + I S L V LGG
Sbjct: 545 QGFDRHLYALRYLATARGLNLPELYLDPAYQQMNHNILSTSTLNSPAVSLGGF----APV 600
Query: 66 IVDQFYTRYPTRSIKFNCNFDLYFSRIA 93
+ D F Y CN Y R A
Sbjct: 601 VPDGFGIAYAVHDDWIGCNVSSYSGRNA 628
>pdb|3LJ4|A Chain A, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|B Chain B, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|C Chain C, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|D Chain D, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|E Chain E, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|F Chain F, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|G Chain G, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|H Chain H, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|I Chain I, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|J Chain J, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|K Chain K, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|L Chain L, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|1VT0|M Chain M, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|N Chain N, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|O Chain O, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|P Chain P, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|Q Chain Q, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|R Chain R, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|S Chain S, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|T Chain T, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|U Chain U, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|V Chain V, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|W Chain W, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|X Chain X, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
Length = 602
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 60 HNKLEDIVDQFYTRY-PTRSIKFNCNFDLYFSRIASWRDMLGIY 102
N+LE I+ +F + + + DL+FSR++ W D L Y
Sbjct: 5 ENRLESILSRFDADWTASDEARREAKNDLFFSRVSQWDDWLSQY 48
>pdb|2H4T|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase Ii
pdb|2H4T|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase Ii
Length = 626
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 6 KGFDDTKVGVKGLVDAGVVNIPRIFIQPSEELAQELITHWSNLQVLVVDLGGIRHNKLED 65
+GFD ++ L A +N+P +++ P+ + I S L V LGG
Sbjct: 520 QGFDRHLYALRYLATARGLNLPELYLDPAYQQMNHNILSTSTLNSPAVSLGGF----APV 575
Query: 66 IVDQFYTRYPTRSIKFNCNFDLYFSRIA 93
+ D F Y CN Y R A
Sbjct: 576 VPDGFGIAYAVHDDWIGCNVSSYSGRNA 603
>pdb|2YVS|A Chain A, Crystal Structure Of Glycolate Oxidase Subunit Glce From
Thermus Thermophilus Hb8
pdb|2YVS|B Chain B, Crystal Structure Of Glycolate Oxidase Subunit Glce From
Thermus Thermophilus Hb8
Length = 219
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 122 LYPYTTMAHMKEVRKLGETLFGILSVALGLEPEYLKGMGCSNG--YDFVYNY 171
LY Y H KEV + E G + L L P + +G+G G +D + Y
Sbjct: 149 LYAYH-FGHPKEVERFREAFGGEEARPLDLRPRFPRGLGLGEGPLWDLRFRY 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,816,930
Number of Sequences: 62578
Number of extensions: 331872
Number of successful extensions: 592
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 15
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)