BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043487
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 29 YIPCATDSLVVSVSHLILMGLCFYRIWLIKKDFKVQRFCLKSKLYNYMLGFLAAYCTAKP 88
Y P A L V+ + ++L + KK+FKV F ++ N +G + +
Sbjct: 101 YSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRV 160
Query: 89 LFQLIMGISA 98
Q+ G+ A
Sbjct: 161 AAQIFHGMGA 170
>pdb|3ALX|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam
(Mv-H(L482r)-Slam(N102hR108Y) FUSION)
pdb|3ALX|B Chain B, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam
(Mv-H(L482r)-Slam(N102hR108Y) FUSION)
pdb|3ALX|C Chain C, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam
(Mv-H(L482r)-Slam(N102hR108Y) FUSION)
pdb|3ALX|D Chain D, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam
(Mv-H(L482r)-Slam(N102hR108Y) FUSION)
Length = 559
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 57 IKKDFKVQRFCLKSKLY 73
++K+ VQRFCL KLY
Sbjct: 532 LEKNISVQRFCLHLKLY 548
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|B Chain B, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|C Chain C, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|D Chain D, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|E Chain E, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|F Chain F, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|G Chain G, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|H Chain H, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
Length = 513
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 56 LIKKDFKVQRFCLKSKLYNYMLGFL 80
LI DF Q+F ++SK+ Y+ FL
Sbjct: 166 LILNDFVRQKFIIRSKIITYIRSFL 190
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|B Chain B, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|C Chain C, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|D Chain D, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
Length = 521
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 56 LIKKDFKVQRFCLKSKLYNYMLGFL 80
LI DF Q+F ++SK+ Y+ FL
Sbjct: 166 LILNDFVRQKFIIRSKIITYIRSFL 190
>pdb|3ALW|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam (Form I,
Mv-H-Slam(N102hR108Y) FUSION)
Length = 559
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 57 IKKDFKVQRFCLKSKLY 73
++K+ VQRFCL KLY
Sbjct: 532 LEKNISVQRFCLHLKLY 548
>pdb|1MYR|A Chain A, Myrosinase From Sinapis Alba
Length = 501
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 6 LDWYCRPVANGVWTKVVDNAFGAYIP 31
L W+ P+ NG + +++ + GA +P
Sbjct: 283 LGWFMGPLTNGTYPQIMIDTVGARLP 308
>pdb|3ALZ|B Chain B, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam (Form I)
Length = 149
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 57 IKKDFKVQRFCLKSKLYN 74
++K+ VQRFCL KLY
Sbjct: 122 LEKNISVQRFCLHLKLYE 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.143 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,526,526
Number of Sequences: 62578
Number of extensions: 118685
Number of successful extensions: 202
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 9
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)