Query 043487
Match_columns 119
No_of_seqs 24 out of 26
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 05:33:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03130 ABC transporter C fam 99.9 3.4E-23 7.5E-28 195.2 6.8 114 1-114 1-114 (1622)
2 PLN03232 ABC transporter C fam 99.7 3.3E-18 7.2E-23 160.0 6.2 113 1-113 1-113 (1495)
3 PF07958 DUF1688: Protein of u 52.5 9.4 0.0002 34.1 1.9 35 81-116 285-319 (420)
4 TIGR01478 STEVOR variant surfa 46.0 13 0.00029 31.9 1.8 35 21-58 250-284 (295)
5 PTZ00370 STEVOR; Provisional 42.2 17 0.00037 31.2 1.8 35 21-58 246-280 (296)
6 COG2981 CysZ Uncharacterized p 42.0 41 0.00088 28.4 4.0 50 44-93 162-224 (250)
7 PF12597 DUF3767: Protein of u 37.5 23 0.00051 26.0 1.7 23 30-52 37-59 (118)
8 TIGR00957 MRP_assoc_pro multi 36.8 63 0.0014 32.1 4.9 37 23-59 17-53 (1522)
9 KOG3841 TEF-1 and related tran 35.9 13 0.00028 33.6 0.1 37 4-40 63-105 (455)
10 PF09581 Spore_III_AF: Stage I 34.4 37 0.00081 25.1 2.4 24 71-94 21-44 (188)
11 PF11188 DUF2975: Protein of u 33.9 39 0.00084 23.0 2.3 65 27-95 20-86 (136)
12 KOG2575 Glucosyltransferase - 29.5 36 0.00079 31.2 1.9 21 12-37 291-311 (510)
13 PF08285 DPM3: Dolichol-phosph 28.5 61 0.0013 23.0 2.5 23 75-101 43-65 (91)
14 smart00426 TEA TEA domain. 27.4 16 0.00036 25.3 -0.5 24 14-37 2-29 (68)
15 PF09323 DUF1980: Domain of un 25.5 1.1E+02 0.0025 23.0 3.7 41 40-81 36-83 (182)
16 PF02398 Corona_7: Coronavirus 25.2 66 0.0014 23.9 2.3 20 37-56 79-98 (101)
17 PF14808 TMEM164: TMEM164 fami 23.9 1.3E+02 0.0027 25.1 4.0 60 33-95 31-91 (252)
18 PF00599 Flu_M2: Influenza Mat 22.3 79 0.0017 23.4 2.2 24 33-56 27-56 (97)
19 KOG0072 GTP-binding ADP-ribosy 21.9 34 0.00074 27.7 0.3 19 92-110 60-78 (182)
20 cd03507 Delta12-FADS-like The 21.2 1.7E+02 0.0036 22.7 4.0 55 35-90 28-82 (222)
21 COG3657 Uncharacterized protei 20.3 46 0.001 24.8 0.7 18 10-27 43-60 (100)
No 1
>PLN03130 ABC transporter C family member; Provisional
Probab=99.88 E-value=3.4e-23 Score=195.23 Aligned_cols=114 Identities=74% Similarity=1.400 Sum_probs=111.1
Q ss_pred CCCCcccccccccCCCcchhccccccccccccccchhhhhHHHHHHHHHHHHhhhhhhcCCeeeeEEeeccchhhHHHHH
Q 043487 1 MALKPLDWYCRPVANGVWTKVVDNAFGAYIPCATDSLVVSVSHLILMGLCFYRIWLIKKDFKVQRFCLKSKLYNYMLGFL 80 (119)
Q Consensus 1 Mg~~~l~wyCrPv~~GvW~k~v~~aFGAyTPC~~DslVI~iS~lvLl~lc~yRIw~i~~~~~~qrf~lrs~~y~y~l~lL 80 (119)
|||||++|||+|.++|+|++.++++||+||||..|++++++++++|+++|.+|||.++++.+.++++.+.+++++.++++
T Consensus 1 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1622)
T PLN03130 1 MGFEPLDWYCRPVPNGVWAKKVDNAFGAYTPCATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFLALL 80 (1622)
T ss_pred CcchhhhhhcCCCccCCCCcccccccCCCCccHHhhHHHHHHHHHHHHHHHHHHHHhccccccCCccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHhhhceecCCCCCCCCCeeEEE
Q 043487 81 AAYCTAKPLFQLIMGISALDLDGQSGLAPFEVDY 114 (119)
Q Consensus 81 A~yC~~ePL~rl~~giS~~Nldgqt~laPfEi~~ 114 (119)
.++|+++|+++.++++|++|+|++++.+|+|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1622)
T PLN03130 81 AAYCTAEPLFRLVMGISVLNLDGQTSLPPFEIVS 114 (1622)
T ss_pred HHHHHHHHHHHHHHHhhhhccccccccccchhHH
Confidence 9999999999999999999999999999999763
No 2
>PLN03232 ABC transporter C family member; Provisional
Probab=99.73 E-value=3.3e-18 Score=159.96 Aligned_cols=113 Identities=55% Similarity=1.151 Sum_probs=105.8
Q ss_pred CCCCcccccccccCCCcchhccccccccccccccchhhhhHHHHHHHHHHHHhhhhhhcCCeeeeEEeeccchhhHHHHH
Q 043487 1 MALKPLDWYCRPVANGVWTKVVDNAFGAYIPCATDSLVVSVSHLILMGLCFYRIWLIKKDFKVQRFCLKSKLYNYMLGFL 80 (119)
Q Consensus 1 Mg~~~l~wyCrPv~~GvW~k~v~~aFGAyTPC~~DslVI~iS~lvLl~lc~yRIw~i~~~~~~qrf~lrs~~y~y~l~lL 80 (119)
||||.|.++|+|.++|+|.+.++++|++||||..|+++++++++.|+++|.+|+|.+.+..+.++++.+..++++.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1495)
T PLN03232 1 MGFEALNWYCKPIAEGFWEKTVDGAFGAYTPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGIL 80 (1495)
T ss_pred CchhHHHhhcCCccccCCCcccccccCCCCccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHH
Confidence 99999999999998679999999999999999999999999999999999999999964447888888899999999999
Q ss_pred HHhhhhhhHHHHHhhhceecCCCCCCCCCeeEE
Q 043487 81 AAYCTAKPLFQLIMGISALDLDGQSGLAPFEVD 113 (119)
Q Consensus 81 A~yC~~ePL~rl~~giS~~Nldgqt~laPfEi~ 113 (119)
..+|+.+++++.++++|++|+|+++..+|+|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (1495)
T PLN03232 81 ACYCVVEPVLRLVMGISLFDMDEETDLPPFEVA 113 (1495)
T ss_pred HHHHHHHHHHHHHHHhhhhccccccccccchhH
Confidence 999999999999999999999999888888876
No 3
>PF07958 DUF1688: Protein of unknown function (DUF1688); InterPro: IPR012469 A family of uncharacterised fungal proteins.
Probab=52.54 E-value=9.4 Score=34.08 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=29.6
Q ss_pred HHhhhhhhHHHHHhhhceecCCCCCCCCCeeEEEee
Q 043487 81 AAYCTAKPLFQLIMGISALDLDGQSGLAPFEVDYRV 116 (119)
Q Consensus 81 A~yC~~ePL~rl~~giS~~Nldgqt~laPfEi~~~v 116 (119)
-+|+..||+-++ +|+.+.|+|..|+||=|.=-++.
T Consensus 285 LtYSL~ePl~~~-~g~~v~g~d~lTGLPEYRNGGLf 319 (420)
T PF07958_consen 285 LTYSLIEPLEWL-AGIEVTGLDLLTGLPEYRNGGLF 319 (420)
T ss_pred HHHHHHHHHHHh-cCCEEeccccCCCchhhccCceE
Confidence 468999999998 99999999999999987644433
No 4
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=45.96 E-value=13 Score=31.86 Aligned_cols=35 Identities=26% Similarity=0.560 Sum_probs=27.0
Q ss_pred ccccccccccccccchhhhhHHHHHHHHHHHHhhhhhh
Q 043487 21 VVDNAFGAYIPCATDSLVVSVSHLILMGLCFYRIWLIK 58 (119)
Q Consensus 21 ~v~~aFGAyTPC~~DslVI~iS~lvLl~lc~yRIw~i~ 58 (119)
+.-.|-|+|-||++-.||+-|--+||++| -||+-.
T Consensus 250 AAtaA~aaF~Pcgiaalvllil~vvliiL---YiWlyr 284 (295)
T TIGR01478 250 AASAATSTFLPYGIAALVLIILTVVLIIL---YIWLYR 284 (295)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 45667899999999999998887777764 366653
No 5
>PTZ00370 STEVOR; Provisional
Probab=42.22 E-value=17 Score=31.24 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=26.8
Q ss_pred ccccccccccccccchhhhhHHHHHHHHHHHHhhhhhh
Q 043487 21 VVDNAFGAYIPCATDSLVVSVSHLILMGLCFYRIWLIK 58 (119)
Q Consensus 21 ~v~~aFGAyTPC~~DslVI~iS~lvLl~lc~yRIw~i~ 58 (119)
+.-.|-|||-||++-.||+-|--+||++| -||+-.
T Consensus 246 AAtaAsaaF~Pygiaalvllil~vvliil---Yiwlyr 280 (296)
T PTZ00370 246 AASAASSAFYPYGIAALVLLILAVVLIIL---YIWLYR 280 (296)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 45567899999999999998887777764 356643
No 6
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=42.05 E-value=41 Score=28.44 Aligned_cols=50 Identities=18% Similarity=0.433 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhhhh---hcCCeeeeEEee----------ccchhhHHHHHHHhhhhhhHHHHH
Q 043487 44 LILMGLCFYRIWLI---KKDFKVQRFCLK----------SKLYNYMLGFLAAYCTAKPLFQLI 93 (119)
Q Consensus 44 lvLl~lc~yRIw~i---~~~~~~qrf~lr----------s~~y~y~l~lLA~yC~~ePL~rl~ 93 (119)
+.....-+.-.|.+ ..|+...|||++ ++.-++..|++.+.|++-|+..|+
T Consensus 162 v~pv~~flft~wmlaiqy~dyp~dnhk~~f~~mr~~l~q~~~~~~~fGlv~~~f~~IPlvNl~ 224 (250)
T COG2981 162 VAPVAWFLFTAWMLAIQYFDYPADNHKVPFAEMRLLLRQYRVTVFGFGLVVALFTAIPLVNLL 224 (250)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhcCCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667778886 689999999997 566788999999999999999854
No 7
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=37.46 E-value=23 Score=25.99 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=19.1
Q ss_pred cccccchhhhhHHHHHHHHHHHH
Q 043487 30 IPCATDSLVVSVSHLILMGLCFY 52 (119)
Q Consensus 30 TPC~~DslVI~iS~lvLl~lc~y 52 (119)
+||+-||+..+|+--+.+|+--+
T Consensus 37 iPCfR~slL~Gi~~G~~vG~~~f 59 (118)
T PF12597_consen 37 IPCFRDSLLYGIAGGFGVGGLRF 59 (118)
T ss_pred CCcHHHHHHHHHHHHHHHHhhhh
Confidence 79999999999998877775443
No 8
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=36.76 E-value=63 Score=32.10 Aligned_cols=37 Identities=8% Similarity=0.139 Sum_probs=29.7
Q ss_pred ccccccccccccchhhhhHHHHHHHHHHHHhhhhhhc
Q 043487 23 DNAFGAYIPCATDSLVVSVSHLILMGLCFYRIWLIKK 59 (119)
Q Consensus 23 ~~aFGAyTPC~~DslVI~iS~lvLl~lc~yRIw~i~~ 59 (119)
++.--.+|||..|++...+.+..++.++..|+|.+.+
T Consensus 17 ~~~~~d~t~~f~~~~~~~~p~~~~~~~~~~~~~~l~~ 53 (1522)
T TIGR00957 17 HTSNPDFTKCFQNTVLAWVPCFYLWVCFPCYFLYLSR 53 (1522)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444568999999888777888888899999998853
No 9
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=35.87 E-value=13 Score=33.62 Aligned_cols=37 Identities=27% Similarity=0.678 Sum_probs=29.9
Q ss_pred Ccccccccc--cCCCcchhcccccc----ccccccccchhhhh
Q 043487 4 KPLDWYCRP--VANGVWTKVVDNAF----GAYIPCATDSLVVS 40 (119)
Q Consensus 4 ~~l~wyCrP--v~~GvW~k~v~~aF----GAyTPC~~DslVI~ 40 (119)
+..+.+=++ -+.|||+.++|.+| .-|-||+.--++|+
T Consensus 63 ~~~~~~~D~~~daegvWSpdIEqsFqEALaiyppcGrrKIils 105 (455)
T KOG3841|consen 63 EAKDKFTDNQRDAEGVWSPDIEQSFQEALAIYPPCGRRKIILS 105 (455)
T ss_pred cccccCCccccccccccChhHHHHHHHHHhhcCCCCceeEEEc
Confidence 445556666 78999999999877 67999999988886
No 10
>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of these proteins is poorly conserved.
Probab=34.43 E-value=37 Score=25.07 Aligned_cols=24 Identities=21% Similarity=0.492 Sum_probs=21.2
Q ss_pred cchhhHHHHHHHhhhhhhHHHHHh
Q 043487 71 KLYNYMLGFLAAYCTAKPLFQLIM 94 (119)
Q Consensus 71 ~~y~y~l~lLA~yC~~ePL~rl~~ 94 (119)
+|-+.++||+-..+...|+++++-
T Consensus 21 kYvr~v~GLili~~il~Pil~l~~ 44 (188)
T PF09581_consen 21 KYVRFVLGLILILAILSPILSLFG 44 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999853
No 11
>PF11188 DUF2975: Protein of unknown function (DUF2975); InterPro: IPR021354 This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=33.93 E-value=39 Score=23.00 Aligned_cols=65 Identities=15% Similarity=0.322 Sum_probs=41.9
Q ss_pred ccccccccchhhhhHHHHHHHHHHHHhhhhhhcCCeeee-EEeec-cchhhHHHHHHHhhhhhhHHHHHhh
Q 043487 27 GAYIPCATDSLVVSVSHLILMGLCFYRIWLIKKDFKVQR-FCLKS-KLYNYMLGFLAAYCTAKPLFQLIMG 95 (119)
Q Consensus 27 GAyTPC~~DslVI~iS~lvLl~lc~yRIw~i~~~~~~qr-f~lrs-~~y~y~l~lLA~yC~~ePL~rl~~g 95 (119)
++|.|.. ++.+..+++..+++|.+|++.++.+-.+ |.-++ ++.+.+...+.++...+.+......
T Consensus 20 ~~~~~~~----~~~~~~~~~~~~~l~~~~~ll~~i~~~~~Fs~~n~~~l~~ig~~~l~~~~~~~~~~~~~~ 86 (136)
T PF11188_consen 20 GAYWPFL----LIGLLVLLLILIALYQLRRLLRNIQKGKPFSPENIRRLRRIGWLLLIISILSFIANFILN 86 (136)
T ss_pred chHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554 4577778888899999999877665554 55554 3455555566666666555555443
No 12
>KOG2575 consensus Glucosyltransferase - Alg6p [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=29.51 E-value=36 Score=31.25 Aligned_cols=21 Identities=29% Similarity=0.673 Sum_probs=18.4
Q ss_pred ccCCCcchhccccccccccccccchh
Q 043487 12 PVANGVWTKVVDNAFGAYIPCATDSL 37 (119)
Q Consensus 12 Pv~~GvW~k~v~~aFGAyTPC~~Dsl 37 (119)
|++.|+||+||.|=. |.++.+
T Consensus 291 Pf~RGlfEDKVANfW-----Ct~n~~ 311 (510)
T KOG2575|consen 291 PFARGLFEDKVANFW-----CTFNVF 311 (510)
T ss_pred chhcchhhhhhhhhh-----hhhhhh
Confidence 899999999999987 888744
No 13
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=28.47 E-value=61 Score=22.97 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=20.2
Q ss_pred hHHHHHHHhhhhhhHHHHHhhhceecC
Q 043487 75 YMLGFLAAYCTAKPLFQLIMGISALDL 101 (119)
Q Consensus 75 y~l~lLA~yC~~ePL~rl~~giS~~Nl 101 (119)
|.+..+.+|+ |+++.-|+.+||-
T Consensus 43 ~~Lv~fG~Ys----l~~lgy~v~tFnD 65 (91)
T PF08285_consen 43 YALVSFGCYS----LFTLGYGVATFND 65 (91)
T ss_pred HHHHHHHHHH----HHHHHHhhhccCC
Confidence 7788999999 9999999999974
No 14
>smart00426 TEA TEA domain.
Probab=27.38 E-value=16 Score=25.26 Aligned_cols=24 Identities=38% Similarity=0.948 Sum_probs=18.7
Q ss_pred CCCcchhcccccc----ccccccccchh
Q 043487 14 ANGVWTKVVDNAF----GAYIPCATDSL 37 (119)
Q Consensus 14 ~~GvW~k~v~~aF----GAyTPC~~Dsl 37 (119)
.++||...||+|| -.|.||++-..
T Consensus 2 g~~vWp~~lE~Af~~aL~~~~~~g~~ki 29 (68)
T smart00426 2 AEGVWSPDIEQAFQEALAIYPPCGRRKI 29 (68)
T ss_pred CCCcCcHHHHHHHHHHHHHcCccCcccc
Confidence 4689999999988 46777777653
No 15
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=25.54 E-value=1.1e+02 Score=22.97 Aligned_cols=41 Identities=17% Similarity=0.338 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHhhhhhhcCCeee-------eEEeeccchhhHHHHHH
Q 043487 40 SVSHLILMGLCFYRIWLIKKDFKVQ-------RFCLKSKLYNYMLGFLA 81 (119)
Q Consensus 40 ~iS~lvLl~lc~yRIw~i~~~~~~q-------rf~lrs~~y~y~l~lLA 81 (119)
-+|.++|+.+++..+|.+.+..+-. +-+. ++...|.+-++.
T Consensus 36 ~~a~i~l~ilai~q~~~~~~~~~~~~~~h~h~~~~~-~~~~~y~l~~iP 83 (182)
T PF09323_consen 36 YFAAILLLILAIVQLWRWFRPKRRKEDCHDHGHSKS-KKLWSYFLFLIP 83 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccccc-cccHHHHHHHHH
Confidence 4677788899999999986655442 1111 566667665543
No 16
>PF02398 Corona_7: Coronavirus protein 7; InterPro: IPR003449 This is a family of proteins from Coronavirus, which may function in the formation of membrane-bound replication complexes or in viral assembly.
Probab=25.17 E-value=66 Score=23.91 Aligned_cols=20 Identities=40% Similarity=0.964 Sum_probs=15.8
Q ss_pred hhhhHHHHHHHHHHHHhhhh
Q 043487 37 LVVSVSHLILMGLCFYRIWL 56 (119)
Q Consensus 37 lVI~iS~lvLl~lc~yRIw~ 56 (119)
+++-+--+|++++|.||.--
T Consensus 79 ~~lrviFlvlL~f~cy~ll~ 98 (101)
T PF02398_consen 79 VVLRVIFLVLLGFCCYRLLV 98 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999743
No 17
>PF14808 TMEM164: TMEM164 family
Probab=23.91 E-value=1.3e+02 Score=25.11 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=37.3
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhhhhcCCeeeeEEeeccchhhHHH-HHHHhhhhhhHHHHHhh
Q 043487 33 ATDSLVVSVSHLILMGLCFYRIWLIKKDFKVQRFCLKSKLYNYMLG-FLAAYCTAKPLFQLIMG 95 (119)
Q Consensus 33 ~~DslVI~iS~lvLl~lc~yRIw~i~~~~~~qrf~lrs~~y~y~l~-lLA~yC~~ePL~rl~~g 95 (119)
++||+++++-.++++..+..||.. ..+.++.+=+++..+++|. +|+.-=.+|=.++++.|
T Consensus 31 ~~Et~~~~~~~~~~i~~~~~~i~~---~~~~~~~~~~~s~~~~lLLv~L~l~fgveigfK~at~ 91 (252)
T PF14808_consen 31 IIETLFIVPFCIVLIYWSYKRIRP---PPKLSRHKKKKSLGRNLLLVILCLVFGVEIGFKFATK 91 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc---CCccccccccccHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 478999999988888888888775 3334444445666666554 44433334545555544
No 18
>PF00599 Flu_M2: Influenza Matrix protein (M2); InterPro: IPR002089 This entry contains Influenza virus matrix protein 2. It is an integral membrane protein that is expressed on the infected cell surface and incorporated into virions where it is a minor component. The protein spans the viral membrane with an extracellular amino-terminus and a cytoplasmic carboxy-terminus. The transmembrane domain of the M2 protein forms the channel pore. The M2 protein, which forms a homotetramer, has H+ ion channel which was found to be regulated by pH [ and may have a pivotal role in the biology of Influenza virus infection [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015992 proton transport, 0033644 host cell membrane, 0055036 virion membrane; PDB: 2L0J_A 2KWX_B 2KIH_A 2RLF_A 1MP6_A 2LJB_D 2LJC_A 2H95_B 1NYJ_B 3BKD_E ....
Probab=22.33 E-value=79 Score=23.38 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=16.9
Q ss_pred ccchhhhhHHHHHHHHH------HHHhhhh
Q 043487 33 ATDSLVVSVSHLILMGL------CFYRIWL 56 (119)
Q Consensus 33 ~~DslVI~iS~lvLl~l------c~yRIw~ 56 (119)
.+-.=+|+|-||+|-++ |+||.-.
T Consensus 27 v~aA~IiGILHLiLWI~DRlffkciYrr~k 56 (97)
T PF00599_consen 27 VIAANIIGILHLILWILDRLFFKCIYRRFK 56 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455789999998665 7887543
No 19
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.95 E-value=34 Score=27.69 Aligned_cols=19 Identities=26% Similarity=0.567 Sum_probs=16.1
Q ss_pred HHhhhceecCCCCCCCCCe
Q 043487 92 LIMGISALDLDGQSGLAPF 110 (119)
Q Consensus 92 l~~giS~~Nldgqt~laPf 110 (119)
-.+..++-||.||+|++||
T Consensus 60 KNLk~~vwdLggqtSirPy 78 (182)
T KOG0072|consen 60 KNLKFQVWDLGGQTSIRPY 78 (182)
T ss_pred ccccceeeEccCcccccHH
Confidence 3566788899999999997
No 20
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=21.19 E-value=1.7e+02 Score=22.69 Aligned_cols=55 Identities=16% Similarity=0.185 Sum_probs=41.1
Q ss_pred chhhhhHHHHHHHHHHHHhhhhhhcCCeeeeEEeeccchhhHHHHHHHhhhhhhHH
Q 043487 35 DSLVVSVSHLILMGLCFYRIWLIKKDFKVQRFCLKSKLYNYMLGFLAAYCTAKPLF 90 (119)
Q Consensus 35 DslVI~iS~lvLl~lc~yRIw~i~~~~~~qrf~lrs~~y~y~l~lLA~yC~~ePL~ 90 (119)
++..+.+...+++|++.-|++.+..|+.=+.+. |+++.|..+|.++..-...|..
T Consensus 28 ~~~~~~~~~~~~~g~~~~~l~~l~He~~H~~~~-~~~~~N~~~g~~~~~~~~~p~~ 82 (222)
T cd03507 28 LSWWLWPLYWIVQGLFLTGLFVLGHDCGHGSFS-DNRRLNDIVGHILHSPLLVPYH 82 (222)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCCcccc-cchhHHHHHHHHHHHHHhCChH
Confidence 445566667788999999999999999777764 7899999999765443344433
No 21
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.31 E-value=46 Score=24.76 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=15.2
Q ss_pred ccccCCCcchhccccccc
Q 043487 10 CRPVANGVWTKVVDNAFG 27 (119)
Q Consensus 10 CrPv~~GvW~k~v~~aFG 27 (119)
++||..|||+=.++-|=|
T Consensus 43 ~kpvgeGV~ELRId~GpG 60 (100)
T COG3657 43 VKPVGEGVSELRIDHGPG 60 (100)
T ss_pred ccccccchhhheeccCCc
Confidence 799999999988886654
Done!