Query 043487
Match_columns 119
No_of_seqs 24 out of 26
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 09:09:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043487.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043487hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hzd_A Transcriptional enhance 45.2 3.4 0.00012 28.3 -0.6 26 14-39 5-34 (82)
2 2kih_A Matrix protein 2; S31N, 24.3 29 0.001 21.4 1.2 24 31-54 8-37 (43)
3 3alz_B CDW150; viral protein-r 22.8 28 0.00095 26.4 1.0 16 58-73 123-138 (149)
4 2fm9_A Cell invasion protein S 20.6 28 0.00096 27.7 0.7 10 23-32 87-96 (215)
5 2fm8_C Cell invasion protein S 19.1 32 0.0011 27.7 0.7 10 23-32 113-122 (240)
6 2iml_A Hypothetical protein; F 16.0 34 0.0012 25.5 0.2 20 96-115 19-38 (199)
7 2wfu_A Probable insulin-like p 14.7 32 0.0011 19.1 -0.2 12 4-15 14-25 (26)
8 2ptf_A Uncharacterized protein 14.5 40 0.0014 25.7 0.3 19 96-114 40-58 (233)
9 1xrd_A LH-1, light-harvesting 13.4 53 0.0018 20.9 0.6 8 51-58 1-8 (52)
10 2l8t_A Transposon TN557 toxic 13.1 34 0.0012 22.9 -0.4 11 19-29 9-19 (71)
No 1
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=45.17 E-value=3.4 Score=28.33 Aligned_cols=26 Identities=31% Similarity=0.920 Sum_probs=21.6
Q ss_pred CCCcchhcccccc----ccccccccchhhh
Q 043487 14 ANGVWTKVVDNAF----GAYIPCATDSLVV 39 (119)
Q Consensus 14 ~~GvW~k~v~~aF----GAyTPC~~DslVI 39 (119)
.+|||...+|.|| -.|.||..-...+
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~g~~k~~l 34 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPCGRRKIIL 34 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSSSCCCCCH
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCCccceee
Confidence 4799999999887 5699999888665
No 2
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=24.28 E-value=29 Score=21.45 Aligned_cols=24 Identities=33% Similarity=0.593 Sum_probs=16.6
Q ss_pred ccccchhhhhHHHHHHHHH------HHHhh
Q 043487 31 PCATDSLVVSVSHLILMGL------CFYRI 54 (119)
Q Consensus 31 PC~~DslVI~iS~lvLl~l------c~yRI 54 (119)
|=++-.-||+|-||+|-.+ |+||-
T Consensus 8 plv~aa~iiGIlHLiLwildRlffkciyrr 37 (43)
T 2kih_A 8 PLVVAANIIGILHLILWILDRLFFKSIYRF 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556899999997554 77774
No 3
>3alz_B CDW150; viral protein-receptor complex, six-bladed beta-propeller FO immunoglobulin fold, beta-sandwich, viral protein-membrane complex; HET: NAG; 4.51A {Saguinus oedipus}
Probab=22.76 E-value=28 Score=26.36 Aligned_cols=16 Identities=63% Similarity=1.134 Sum_probs=13.9
Q ss_pred hcCCeeeeEEeeccch
Q 043487 58 KKDFKVQRFCLKSKLY 73 (119)
Q Consensus 58 ~~~~~~qrf~lrs~~y 73 (119)
-.|++||+|||+=+.|
T Consensus 123 EeN~svq~FCLqLkLY 138 (149)
T 3alz_B 123 EKNISVQRFCLHLKLY 138 (149)
T ss_dssp ECSSEEEEECCEEEEE
T ss_pred ecCccHHHHHHHHHHH
Confidence 4799999999998866
No 4
>2fm9_A Cell invasion protein SIPA; type II secretion, virulence, bacterial, C invasion; 2.00A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=20.60 E-value=28 Score=27.67 Aligned_cols=10 Identities=40% Similarity=0.972 Sum_probs=8.8
Q ss_pred cccccccccc
Q 043487 23 DNAFGAYIPC 32 (119)
Q Consensus 23 ~~aFGAyTPC 32 (119)
+||||++||=
T Consensus 87 kSAFGPWt~~ 96 (215)
T 2fm9_A 87 KSAFGPWLPE 96 (215)
T ss_dssp SCSSSTTSCC
T ss_pred cccCCCCCcc
Confidence 6999999994
No 5
>2fm8_C Cell invasion protein SIPA; type III secretion, chaperone, translocation, protein foldin virulence, bacterial, chaperone-cell invasion C; 2.20A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=19.07 E-value=32 Score=27.74 Aligned_cols=10 Identities=40% Similarity=0.972 Sum_probs=8.9
Q ss_pred cccccccccc
Q 043487 23 DNAFGAYIPC 32 (119)
Q Consensus 23 ~~aFGAyTPC 32 (119)
+||||++||=
T Consensus 113 kSAFGPWt~~ 122 (240)
T 2fm8_C 113 KSAFGPWLPE 122 (240)
T ss_dssp SCSSSTTSCC
T ss_pred cccCCCCCcc
Confidence 7999999994
No 6
>2iml_A Hypothetical protein; FMN binding, PSI-2, structural genomics, protein structure initiative; HET: FMN; 1.65A {Archaeoglobus fulgidus} SCOP: b.45.1.4
Probab=16.02 E-value=34 Score=25.45 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=17.2
Q ss_pred hceecCCCCCCCCCeeEEEe
Q 043487 96 ISALDLDGQSGLAPFEVDYR 115 (119)
Q Consensus 96 iS~~Nldgqt~laPfEi~~~ 115 (119)
+|+.|.||..++|||-++..
T Consensus 19 VtT~~~~G~~N~AP~s~~~~ 38 (199)
T 2iml_A 19 AITENEDGSWNAAPIGIIVE 38 (199)
T ss_dssp EEEECTTSCEEEEEEEEEES
T ss_pred EEEcCCCCCEEeccEEEEEc
Confidence 68889999999999988753
No 7
>2wfu_A Probable insulin-like peptide 5 A chain; cleavage on PAIR of basic residues, signaling protein; 1.85A {Drosophila melanogaster}
Probab=14.70 E-value=32 Score=19.11 Aligned_cols=12 Identities=25% Similarity=0.529 Sum_probs=7.0
Q ss_pred CcccccccccCC
Q 043487 4 KPLDWYCRPVAN 15 (119)
Q Consensus 4 ~~l~wyCrPv~~ 15 (119)
+-|..||.|+++
T Consensus 14 ~~L~~YC~~~~~ 25 (26)
T 2wfu_A 14 STLRAYCDSXXX 25 (26)
T ss_dssp HHHHHTSCC---
T ss_pred HHHHHhcccccc
Confidence 347789999876
No 8
>2ptf_A Uncharacterized protein MTH_863; structural genomics, unknown function, PSI-2, protein struct initiative; HET: FMN; 2.35A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.45.1.4
Probab=14.52 E-value=40 Score=25.66 Aligned_cols=19 Identities=21% Similarity=0.123 Sum_probs=16.9
Q ss_pred hceecCCCCCCCCCeeEEE
Q 043487 96 ISALDLDGQSGLAPFEVDY 114 (119)
Q Consensus 96 iS~~Nldgqt~laPfEi~~ 114 (119)
||+.|.||..++|||-++.
T Consensus 40 VtT~~~dG~~NlAP~s~~~ 58 (233)
T 2ptf_A 40 VVTWDDSMVGNAAPIGVLC 58 (233)
T ss_dssp EEEECTTCCEEEEEEEEEE
T ss_pred EEEeCCCCCEeeccEEEEE
Confidence 7889999999999998764
No 9
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=13.45 E-value=53 Score=20.86 Aligned_cols=8 Identities=38% Similarity=1.103 Sum_probs=6.3
Q ss_pred HHhhhhhh
Q 043487 51 FYRIWLIK 58 (119)
Q Consensus 51 ~yRIw~i~ 58 (119)
.||||+++
T Consensus 1 m~kIWl~f 8 (52)
T 1xrd_A 1 MWRIWQLF 8 (52)
T ss_dssp CGGGGGTS
T ss_pred CceEEEEE
Confidence 38999986
No 10
>2l8t_A Transposon TN557 toxic shock syndrome toxin-1; scaffold, bacteriophage, SAPI, structural protein; NMR {Staphylococcus aureus}
Probab=13.07 E-value=34 Score=22.86 Aligned_cols=11 Identities=64% Similarity=0.736 Sum_probs=9.0
Q ss_pred hhccccccccc
Q 043487 19 TKVVDNAFGAY 29 (119)
Q Consensus 19 ~k~v~~aFGAy 29 (119)
+|+|.||||--
T Consensus 9 tkkvanafgln 19 (71)
T 2l8t_A 9 TKKVANAFGLN 19 (71)
T ss_dssp HHHHHHTTCCC
T ss_pred hHHHHHhhcCC
Confidence 58899999954
Done!