Query 043487
Match_columns 119
No_of_seqs 24 out of 26
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 09:09:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043487.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043487hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z96a1 a.5.2.1 (A:295-332) UB 28.4 5.6 0.0004 22.6 -0.1 7 1-7 12-18 (38)
2 d2fm9a1 a.257.1.1 (A:49-263) C 20.9 13 0.00094 27.7 0.7 10 23-32 87-96 (215)
3 d2fkla1 d.230.3.1 (A:126-189) 11.9 20 0.0015 22.1 -0.2 13 24-36 41-53 (64)
4 d1pxza_ b.80.1.1 (A:) Major po 10.8 38 0.0028 25.1 1.0 28 8-39 8-41 (346)
5 d2gica1 a.260.1.1 (A:2-422) Nu 10.3 48 0.0035 26.3 1.5 15 44-58 133-147 (421)
6 d3dssb1 a.102.4.3 (B:7-331) Ra 9.5 27 0.002 25.6 -0.3 31 10-40 168-198 (325)
7 d1i8ya_ g.3.16.1 (A:) N-termin 8.9 40 0.0029 17.8 0.3 7 7-13 21-27 (28)
8 d1xrda1 f.3.1.1 (A:1-52) Light 8.8 44 0.0032 19.8 0.6 7 52-58 2-8 (52)
9 d1s6la2 d.357.1.2 (A:81-212) A 8.8 34 0.0025 22.9 -0.0 13 28-40 12-24 (132)
10 d2jfga3 c.72.2.1 (A:94-297) UD 8.0 82 0.006 19.7 1.7 29 71-99 175-203 (204)
No 1
>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=28.39 E-value=5.6 Score=22.55 Aligned_cols=7 Identities=43% Similarity=1.028 Sum_probs=5.6
Q ss_pred CCCCccc
Q 043487 1 MALKPLD 7 (119)
Q Consensus 1 Mg~~~l~ 7 (119)
||||||+
T Consensus 12 mgfdple 18 (38)
T d1z96a1 12 MGFDPLE 18 (38)
T ss_dssp TTCCHHH
T ss_pred cCCCHHH
Confidence 8888875
No 2
>d2fm9a1 a.257.1.1 (A:49-263) Cell invasion protein SipA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=20.87 E-value=13 Score=27.74 Aligned_cols=10 Identities=40% Similarity=0.972 Sum_probs=8.9
Q ss_pred cccccccccc
Q 043487 23 DNAFGAYIPC 32 (119)
Q Consensus 23 ~~aFGAyTPC 32 (119)
+||||++||=
T Consensus 87 kSAFGPWt~~ 96 (215)
T d2fm9a1 87 KSAFGPWLPE 96 (215)
T ss_dssp SCSSSTTSCC
T ss_pred cccCCCCCcc
Confidence 7999999994
No 3
>d2fkla1 d.230.3.1 (A:126-189) Amyloid beta a4 protein copper binding domain (domain 2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.88 E-value=20 Score=22.07 Aligned_cols=13 Identities=31% Similarity=0.986 Sum_probs=11.1
Q ss_pred cccccccccccch
Q 043487 24 NAFGAYIPCATDS 36 (119)
Q Consensus 24 ~aFGAyTPC~~Ds 36 (119)
..||-+-||++|-
T Consensus 41 ~sy~mLlPCg~d~ 53 (64)
T d2fkla1 41 HDYGMLLPCGIDK 53 (64)
T ss_dssp EEEEEEEECSTTE
T ss_pred EeeeeeeccccCc
Confidence 4699999999984
No 4
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]}
Probab=10.83 E-value=38 Score=25.08 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=18.6
Q ss_pred ccccccCCCcchhccc------cccccccccccchhhh
Q 043487 8 WYCRPVANGVWTKVVD------NAFGAYIPCATDSLVV 39 (119)
Q Consensus 8 wyCrPv~~GvW~k~v~------~aFGAyTPC~~DslVI 39 (119)
|-||| -|++.=+ -|||++|.=.-..-|+
T Consensus 8 ~~~~~----~~~~~~~~~~~~a~Gfg~~ttGG~gG~v~ 41 (346)
T d1pxza_ 8 WRGDS----NWDQNRMKLADCAVGFGSSTMGGKGGDFY 41 (346)
T ss_dssp HHSSC----CTTTCGGGGGGCCCGGGTTCCTTTTSEEE
T ss_pred cCCCC----CHHHHHHhhhhccccccCCCcCCCCceEE
Confidence 88999 5754333 4899998766554443
No 5
>d2gica1 a.260.1.1 (A:2-422) Nucleoprotein {Vesicular stomatitis indiana virus [TaxId: 11277]}
Probab=10.30 E-value=48 Score=26.32 Aligned_cols=15 Identities=33% Similarity=0.337 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhhhhh
Q 043487 44 LILMGLCFYRIWLIK 58 (119)
Q Consensus 44 lvLl~lc~yRIw~i~ 58 (119)
|+++.||+|||-++.
T Consensus 133 l~~~lL~lYRi~r~~ 147 (421)
T d2gica1 133 LPLYLLGLYRVGRTQ 147 (421)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhhhcccc
Confidence 778889999999874
No 6
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.49 E-value=27 Score=25.55 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=20.6
Q ss_pred ccccCCCcchhccccccccccccccchhhhh
Q 043487 10 CRPVANGVWTKVVDNAFGAYIPCATDSLVVS 40 (119)
Q Consensus 10 CrPv~~GvW~k~v~~aFGAyTPC~~DslVI~ 40 (119)
||-.++|.=...=..+-|+||-|++.++.|.
T Consensus 168 cQn~DGGfg~~p~~Esh~g~T~cavasL~ll 198 (325)
T d3dssb1 168 CMNFDGGFGCRPGSESHAGQIYCCTGFLAIT 198 (325)
T ss_dssp TBCTTSCBCSSTTCCCCHHHHHHHHHHHHHT
T ss_pred hcCCcCCccccCCCCCCcchhHHHHHHHHHh
Confidence 6665555433334567789999999887664
No 7
>d1i8ya_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Carp (Cyprinus carpio) [TaxId: 7962]}
Probab=8.95 E-value=40 Score=17.75 Aligned_cols=7 Identities=57% Similarity=1.811 Sum_probs=5.8
Q ss_pred ccccccc
Q 043487 7 DWYCRPV 13 (119)
Q Consensus 7 ~wyCrPv 13 (119)
.|||-|.
T Consensus 21 vw~c~p~ 27 (28)
T d1i8ya_ 21 VWYCSPF 27 (28)
T ss_dssp CEEEETT
T ss_pred cEEeccC
Confidence 6999985
No 8
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=8.82 E-value=44 Score=19.79 Aligned_cols=7 Identities=43% Similarity=1.184 Sum_probs=5.8
Q ss_pred Hhhhhhh
Q 043487 52 YRIWLIK 58 (119)
Q Consensus 52 yRIw~i~ 58 (119)
||||+++
T Consensus 2 ~kiW~~f 8 (52)
T d1xrda1 2 WRIWQLF 8 (52)
T ss_dssp GGGGGTS
T ss_pred ceeeeEe
Confidence 7899885
No 9
>d1s6la2 d.357.1.2 (A:81-212) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}
Probab=8.79 E-value=34 Score=22.85 Aligned_cols=13 Identities=38% Similarity=0.697 Sum_probs=11.2
Q ss_pred cccccccchhhhh
Q 043487 28 AYIPCATDSLVVS 40 (119)
Q Consensus 28 AyTPC~~DslVI~ 40 (119)
-||=||+|+|.+.
T Consensus 12 lya~CAiDALg~p 24 (132)
T d1s6la2 12 LYAWCALDTLIFP 24 (132)
T ss_dssp EEESSTTTTCSCH
T ss_pred EEeehHHHHhhhH
Confidence 5888999999876
No 10
>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
Probab=8.00 E-value=82 Score=19.71 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=20.5
Q ss_pred cchhhHHHHHHHhhhhhhHHHHHhhhcee
Q 043487 71 KLYNYMLGFLAAYCTAKPLFQLIMGISAL 99 (119)
Q Consensus 71 ~~y~y~l~lLA~yC~~ePL~rl~~giS~~ 99 (119)
+.+|.++++.++....-|.-++.-+++.|
T Consensus 175 n~~N~laAia~a~~lGi~~~~i~~~L~~F 203 (204)
T d2jfga3 175 NYTNALAALALADAAGLPRASSLKALTTF 203 (204)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 46778777777777777777777666543
Done!