BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043488
(409 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 274 bits (700), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 141/344 (40%), Positives = 210/344 (61%), Gaps = 5/344 (1%)
Query: 24 QTLIRAGYWDSDDGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVK 83
QT+++A YW FPV+D++S+LFTHL C FAD+NS + ++++S +++ +FS FT TV+
Sbjct: 2 QTVVKASYWFPASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQTVQ 61
Query: 84 IKNPSITTLLXXXXXXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQAN 143
+NPS+ TLL MA NP+ RK FIDSSI++AR YGF GLDL W +
Sbjct: 62 RRNPSVKTLL-SIGGGIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPS 120
Query: 144 TSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNW 203
++ + N G L +EWR+AV EA ++S + +L+L A V YS + YPV ++ L+W
Sbjct: 121 SATEMTNFGTLLREWRSAVVAEA-SSSGKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDW 179
Query: 204 VHVITTEYSSPTWQNFTGAHAALYDP-NSVSNTEYGITEWIEEGLSADKLVLCLPFYGYA 262
V+++ ++ P W TG AAL+DP N+ + + G WI+ GL A K VL P+YGYA
Sbjct: 180 VNLMAYDFYGPGWSRVTGPPAALFDPSNAGPSGDAGTRSWIQAGLPAKKAVLGFPYYGYA 239
Query: 263 WTLVKPEDNGIGAAATGPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKI 322
W L + A TG A+ DG + Y +++ I + G +YNST V +YC G
Sbjct: 240 WRLTNANSHSYYAPTTGAAISPDGSIGYGQIRKFIVDNG--ATTVYNSTVVGDYCYAGTN 297
Query: 323 WFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHYWMLSQAAAE 366
W G+DD +++ KV YAK++ L GY+ W V +D LS+AA++
Sbjct: 298 WIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGLSRAASQ 341
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 266 bits (681), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 141/345 (40%), Positives = 203/345 (58%), Gaps = 10/345 (2%)
Query: 27 IRAGYWDSDDGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKN 86
++ GYW D G +++++S LFTHL C FAD+N +L +SP ++ F FT TV+ KN
Sbjct: 4 VKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRKN 63
Query: 87 PSITTLLXXXXXXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSR 146
PS+ T L MA P+ RK FIDSSI++AR GF GLDL W ++
Sbjct: 64 PSVKTFL-SIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQYPLSAA 122
Query: 147 DKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHV 206
D N+G L EWR A+ EAR NS ++ L+LTA V+ SP YPV+S+ + L+W+++
Sbjct: 123 DMTNLGTLLNEWRTAINTEAR-NSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINL 181
Query: 207 ITTEYSSPTWQ-NFTGAHAALYDP-NSVSNTEYGITEWIEEGLSADKLVLCLPFYGYAWT 264
+ ++ P W + T +HA L+DP N VS ++ GI WI+ G+ KLVL +PFYGYAW
Sbjct: 182 MAYDFYGPNWSPSQTNSHAQLFDPVNHVSGSD-GINAWIQAGVPTKKLVLGIPFYGYAWR 240
Query: 265 LVKPEDNGIGAAATGPA---LHDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGK 321
LV +G+ A A G + DDG +TY ++++I +YN+T V +YC G
Sbjct: 241 LVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVE--SRATTVYNATIVGDYCYSGS 298
Query: 322 IWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHYWMLSQAAAE 366
W +DD + VR KV Y K + L GY+ W V+ D W LS+ A++
Sbjct: 299 NWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTASQ 343
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 266 bits (681), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 141/345 (40%), Positives = 203/345 (58%), Gaps = 10/345 (2%)
Query: 27 IRAGYWDSDDGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKN 86
++ GYW D G +++++S LFTHL C FAD+N +L +SP ++ F FT TV+ KN
Sbjct: 4 VKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRKN 63
Query: 87 PSITTLLXXXXXXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSR 146
PS+ T L MA P+ RK FIDSSI++AR GF GLDL W ++
Sbjct: 64 PSVKTFL-SIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYPLSAA 122
Query: 147 DKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHV 206
D N+G L EWR A+ EAR NS ++ L+LTA V+ SP YPV+S+ + L+W+++
Sbjct: 123 DMTNLGTLLNEWRTAINTEAR-NSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINL 181
Query: 207 ITTEYSSPTWQ-NFTGAHAALYDP-NSVSNTEYGITEWIEEGLSADKLVLCLPFYGYAWT 264
+ ++ P W + T +HA L+DP N VS ++ GI WI+ G+ KLVL +PFYGYAW
Sbjct: 182 MAYDFYGPNWSPSQTNSHAQLFDPVNHVSGSD-GINAWIQAGVPTKKLVLGIPFYGYAWR 240
Query: 265 LVKPEDNGIGAAATGPA---LHDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGK 321
LV +G+ A A G + DDG +TY ++++I +YN+T V +YC G
Sbjct: 241 LVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVE--SRATTVYNATIVGDYCYSGS 298
Query: 322 IWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHYWMLSQAAAE 366
W +DD + VR KV Y K + L GY+ W V+ D W LS+ A++
Sbjct: 299 NWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTASQ 343
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/345 (30%), Positives = 170/345 (49%), Gaps = 27/345 (7%)
Query: 29 AGYWDSDDGFPVSDVNSALFTHLMCGFADVNSTSYELSLSP-SDEKQFSNFTDTVKIKNP 87
A Y + F D++ +L THL+ FA + T+++LS + +DE + F + +K NP
Sbjct: 11 AQYRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEF-NGLKKMNP 67
Query: 88 SITTLLXXXXXXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSW----NQAN 143
+ TLL M + R+ F++S+I+ R Y F GLDL W +Q +
Sbjct: 68 KLKTLLAIGGWNFGTQKFTD-MVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGS 126
Query: 144 TSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNW 203
+ DK L ++ A EA+ S + +L+L+A V A Y VD I Q L++
Sbjct: 127 PAVDKERFTTLVQDLANAFQQEAQT-SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDF 185
Query: 204 VHVITTEYSSPTWQNFTGAHAALYDPNSVS------NTEYGITEWIEEGLSADKLVLCLP 257
V+++ ++ +W+ TG ++ LY S N + + +W+E+G A KL+L +P
Sbjct: 186 VNLMAYDFHG-SWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLEKGTPASKLILGMP 244
Query: 258 FYGYAWTLVKPEDNGIGAAAT-----GPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTY 312
YG ++TL D +GA AT GP + G++ Y EV + G Q + +
Sbjct: 245 TYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW---KGATKQRIQDQK- 300
Query: 313 VVNYCSIGKIWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHY 357
V Y W GFDDVE+ + KV+Y K+K L G VW + D +
Sbjct: 301 -VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 170/345 (49%), Gaps = 27/345 (7%)
Query: 29 AGYWDSDDGFPVSDVNSALFTHLMCGFADVNSTSYELSLSP-SDEKQFSNFTDTVKIKNP 87
A Y + F D++ +L THL+ FA + T+++LS + +DE + F + +K NP
Sbjct: 11 AQYRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEF-NGLKKMNP 67
Query: 88 SITTLLXXXXXXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSW----NQAN 143
+ TLL M + R+ F++S+I+ R Y F GLDL W +Q +
Sbjct: 68 KLKTLLAIGGWNFGTQKFTD-MVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGS 126
Query: 144 TSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNW 203
+ DK L ++ A EA+ S + +L+L+A V A Y VD I Q L++
Sbjct: 127 PAVDKERFTTLVQDLANAFQQEAQT-SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDF 185
Query: 204 VHVITTEYSSPTWQNFTGAHAALYDPNSVS------NTEYGITEWIEEGLSADKLVLCLP 257
V+++ ++ +W+ TG ++ LY S N + + +W+++G A KL+L +P
Sbjct: 186 VNLMAYDFHG-SWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPASKLILGMP 244
Query: 258 FYGYAWTLVKPEDNGIGAAAT-----GPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTY 312
YG ++TL D +GA AT GP + G++ Y EV + G Q + +
Sbjct: 245 TYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW---KGATKQRIQDQK- 300
Query: 313 VVNYCSIGKIWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHY 357
V Y W GFDDVE+ + KV+Y K+K L G VW + D +
Sbjct: 301 -VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 170/345 (49%), Gaps = 27/345 (7%)
Query: 29 AGYWDSDDGFPVSDVNSALFTHLMCGFADVNSTSYELSLSP-SDEKQFSNFTDTVKIKNP 87
A Y + F D++ +L THL+ FA + T+++LS + +DE + F + +K NP
Sbjct: 11 AQYRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEF-NGLKKMNP 67
Query: 88 SITTLLXXXXXXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSW----NQAN 143
+ TLL M + R+ F++S+I+ R Y F GLDL W +Q +
Sbjct: 68 KLKTLLAIGGWNFGTQKFTD-MVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGS 126
Query: 144 TSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNW 203
+ DK L ++ A EA+ S + +L+L+A V A Y VD I Q L++
Sbjct: 127 PAVDKERFTTLVQDLANAFQQEAQT-SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDF 185
Query: 204 VHVITTEYSSPTWQNFTGAHAALYDPNSVS------NTEYGITEWIEEGLSADKLVLCLP 257
V+++ ++ +W+ TG ++ LY S N + + +W+++G A KL+L +P
Sbjct: 186 VNLMAYDFHG-SWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPASKLILGMP 244
Query: 258 FYGYAWTLVKPEDNGIGAAAT-----GPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTY 312
YG ++TL D +GA AT GP + G++ Y EV + G Q + +
Sbjct: 245 TYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW---KGATKQRIQDQK- 300
Query: 313 VVNYCSIGKIWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHY 357
V Y W GFDDVE+ + KV+Y K+K L G VW + D +
Sbjct: 301 -VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 170/345 (49%), Gaps = 27/345 (7%)
Query: 29 AGYWDSDDGFPVSDVNSALFTHLMCGFADVNSTSYELSLSP-SDEKQFSNFTDTVKIKNP 87
A Y + F D++ +L THL+ FA + T+++LS + +DE + F + +K NP
Sbjct: 11 AQYRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEF-NGLKKMNP 67
Query: 88 SITTLLXXXXXXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSW----NQAN 143
+ TLL M + R+ F++S+I+ R Y F GLDL W +Q +
Sbjct: 68 KLKTLLAIGGWNFGTQKFTD-MVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGS 126
Query: 144 TSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNW 203
+ DK L ++ A EA+ S + +L+L+A V A Y VD I Q L++
Sbjct: 127 PAVDKERFTTLVQDLANAFQQEAQT-SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDF 185
Query: 204 VHVITTEYSSPTWQNFTGAHAALYDPNSVS------NTEYGITEWIEEGLSADKLVLCLP 257
V+++ ++ +W+ TG ++ LY S N + + +W+++G A KL+L +P
Sbjct: 186 VNLMAYDFHG-SWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMP 244
Query: 258 FYGYAWTLVKPEDNGIGAAAT-----GPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTY 312
YG ++TL D +GA AT GP + G++ Y EV + G Q + +
Sbjct: 245 TYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW---KGATKQRIQDQK- 300
Query: 313 VVNYCSIGKIWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHY 357
V Y W GFDDVE+ + KV+Y K+K L G VW + D +
Sbjct: 301 -VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 137 bits (346), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 169/345 (48%), Gaps = 27/345 (7%)
Query: 29 AGYWDSDDGFPVSDVNSALFTHLMCGFADVNSTSYELSLSP-SDEKQFSNFTDTVKIKNP 87
A Y + F D++ +L THL+ FA + T+++LS + +DE + F + +K NP
Sbjct: 11 AQYRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEF-NGLKKMNP 67
Query: 88 SITTLLXXXXXXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSW----NQAN 143
+ TLL M + R+ F++S+I+ R Y F GLDL W +Q +
Sbjct: 68 KLKTLLAIGGWNFGTQKFTD-MVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGS 126
Query: 144 TSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNW 203
+ DK L ++ A EA+ S + +L+L+A V A Y VD I Q L++
Sbjct: 127 PAVDKERFTTLVQDLANAFQQEAQT-SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDF 185
Query: 204 VHVITTEYSSPTWQNFTGAHAALYDPNSVS------NTEYGITEWIEEGLSADKLVLCLP 257
V+++ ++ +W+ TG ++ LY S N + + +W+++G A KL+L +P
Sbjct: 186 VNLMAYDFHG-SWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMP 244
Query: 258 FYGYAWTLVKPEDNGIGAAAT-----GPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTY 312
YG ++TL D +GA AT GP + G++ Y EV G Q + +
Sbjct: 245 TYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEV---CSWKGATKQRIQDQK- 300
Query: 313 VVNYCSIGKIWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHY 357
V Y W GFDDVE+ + KV+Y K+K L G VW + D +
Sbjct: 301 -VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 160/335 (47%), Gaps = 23/335 (6%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLXXXX 97
F D+N L THL+ FA + + E++ ++ + +K KN + TLL
Sbjct: 20 FMPDDINPCLCTHLIYAFAGMQNN--EITTIEWNDVTLYQAFNGLKNKNSQLKTLLAIGG 77
Query: 98 XXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSW----NQANTSRDKYNIGI 153
M P R+ FI S IK R Y F GLD W ++ + +DK+ +
Sbjct: 78 WNFGTAPFTA-MVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTV 136
Query: 154 LFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSS 213
L +E R A EA+ ++ +L++TA VA + + Y + + QYL+++HV+T +
Sbjct: 137 LVQEMREAFEQEAKQ-INKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHG 195
Query: 214 PTWQNFTGAHAALYD------PNSVSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVK 267
+W+ +TG ++ LY N+ N +Y + W + G A+KL++ P YG+ + L
Sbjct: 196 -SWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSN 254
Query: 268 PEDNGIGAAAT-----GPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKI 322
P + GIGA + GP + G+ Y E+ +KN +++ V Y G +
Sbjct: 255 PSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKN---GATQGWDAPQEVPYAYQGNV 311
Query: 323 WFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHY 357
W G+D+V++ +K + K K G VW + D +
Sbjct: 312 WVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDLDDF 346
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 160/335 (47%), Gaps = 23/335 (6%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLXXXX 97
F D+N L THL+ FA + + E++ ++ + +K KN + TLL
Sbjct: 24 FMPDDINPCLCTHLIYAFAGMQNN--EITTIEWNDVTLYQAFNGLKNKNSQLKTLLAIGG 81
Query: 98 XXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSW----NQANTSRDKYNIGI 153
M P R+ FI S IK R Y F GLD W ++ + +DK+ +
Sbjct: 82 WNFGTAPFTA-MVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTV 140
Query: 154 LFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSS 213
L +E R A EA+ ++ +L++TA VA + + Y + + QYL+++HV+T +
Sbjct: 141 LVQEMREAFEQEAKQ-INKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHG 199
Query: 214 PTWQNFTGAHAALYD------PNSVSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVK 267
+W+ +TG ++ LY N+ N +Y + W + G A+KL++ P YG+ + L
Sbjct: 200 -SWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSN 258
Query: 268 PEDNGIGAAAT-----GPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKI 322
P + GIGA + GP + G+ Y E+ +KN +++ V Y G +
Sbjct: 259 PSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKN---GATQGWDAPQEVPYAYQGNV 315
Query: 323 WFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHY 357
W G+D++++ +K + K K G VW + D +
Sbjct: 316 WVGYDNIKSFDIKAQWLKHNKFGGAMVWAIDLDDF 350
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 167/331 (50%), Gaps = 24/331 (7%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLXXXX 97
FP + ++ L TH++ FA++++ + ++ +T+K +NP++ TLL
Sbjct: 21 FPDA-LDRFLCTHIIYSFANISND--HIDTWEWNDVTLYGMLNTLKNRNPNLKTLLSVGG 77
Query: 98 XXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKE 157
+A N R+ FI S R +GF GLDL+W RDK + L KE
Sbjct: 78 WNFGSQRFSK-IASNTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPG-RRDKQHFTTLIKE 135
Query: 158 WRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQ 217
+A EA+ + QL+L+A ++ ++ ++Y + I Q+L+++ ++T ++ W+
Sbjct: 136 MKAEFIKEAQ--PGKKQLLLSAALSAGKVTIDSSYDIAKISQHLDFISIMTYDFHG-AWR 192
Query: 218 NFTGAHAALY------DPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDN 271
TG H+ L+ P+ SNT+Y + + G A KLV+ +P +G ++TL E
Sbjct: 193 GTTGHHSPLFRGQEDASPDRFSNTDYAVGYMLRLGAPASKLVMGIPTFGRSFTLASSE-T 251
Query: 272 GIGAAATGPAL-----HDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGF 326
G+GA +GP + + G + Y E+ + ++ G V + V Y + G W G+
Sbjct: 252 GVGAPISGPGIPGRFTKEAGTLAYYEICDFLR--GATVHRILGQQ--VPYATKGNQWVGY 307
Query: 327 DDVEAVRVKVAYAKEKKLRGYYVWEVSSDHY 357
DD E+V+ KV Y K+++L G VW + D +
Sbjct: 308 DDQESVKSKVQYLKDRQLAGAMVWALDLDDF 338
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 164/330 (49%), Gaps = 23/330 (6%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLXXXX 97
FP + ++ L TH++ FA++++ E+ ++ + +T+K +NP + TLL
Sbjct: 21 FPDA-IDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPKLKTLLSVGG 77
Query: 98 XXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKE 157
+A R+ FI S R +GF GLDL+W RDK ++ L KE
Sbjct: 78 WNFGPERFSK-IASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPG-RRDKRHLTALVKE 135
Query: 158 WRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQ 217
+A A EA+ + +L+L+A V+ ++ Y + I ++L+++ ++T ++ W+
Sbjct: 136 MKAEFAREAQ--AGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHG-AWR 192
Query: 218 NFTGAHAALYDPNS-----VSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNG 272
G H+ L+ NS SN +Y ++ + G A+KLV+ +P +G ++TL + +G
Sbjct: 193 QTVGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSKTDG 252
Query: 273 IGAAATGPAL-----HDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFD 327
GA +GP + + G++ Y E+ + + +G + V Y + G W +D
Sbjct: 253 -GAPISGPGIPGRFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQWVAYD 307
Query: 328 DVEAVRVKVAYAKEKKLRGYYVWEVSSDHY 357
D E+V+ K Y K ++L G VW + D +
Sbjct: 308 DQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 164/330 (49%), Gaps = 23/330 (6%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLXXXX 97
FP + ++ L TH++ FA++++ E+ ++ + +T+K +NP + TLL
Sbjct: 21 FPDA-IDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPKLKTLLSVGG 77
Query: 98 XXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKE 157
+A R+ FI S R +GF GLDL+W RDK ++ L KE
Sbjct: 78 WNFGPERFSA-IASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPG-RRDKRHLTALVKE 135
Query: 158 WRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQ 217
+A A EA+ + +L+L+A V+ ++ Y + I ++L+++ ++T ++ W+
Sbjct: 136 MKAEFAREAQ--AGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHG-AWR 192
Query: 218 NFTGAHAALYDPNS-----VSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNG 272
G H+ L+ NS SN +Y ++ + G A+KLV+ +P +G ++TL + +G
Sbjct: 193 QTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSKTDG 252
Query: 273 IGAAATGPAL-----HDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFD 327
GA +GP + + G++ Y E+ + + +G + V Y + G W +D
Sbjct: 253 -GAPISGPGIPGRFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQWVAYD 307
Query: 328 DVEAVRVKVAYAKEKKLRGYYVWEVSSDHY 357
D E+V+ K Y K ++L G VW + D +
Sbjct: 308 DQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 164/330 (49%), Gaps = 23/330 (6%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLXXXX 97
FP + ++ L TH++ FA++++ E+ ++ + +T+K +NP + TLL
Sbjct: 21 FPDA-IDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPKLKTLLSVGG 77
Query: 98 XXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKE 157
+A R+ FI S R +GF GLDL+W RDK ++ L KE
Sbjct: 78 WNFGPERFSK-IASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPG-RRDKRHLTALVKE 135
Query: 158 WRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQ 217
+A A EA+ + +L+L+A V+ ++ Y + I ++L+++ ++T ++ W+
Sbjct: 136 MKAEFAREAQ--AGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHG-AWR 192
Query: 218 NFTGAHAALYDPNS-----VSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNG 272
G H+ L+ NS SN +Y ++ + G A+KLV+ +P +G ++TL + +
Sbjct: 193 QTVGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSKTD- 251
Query: 273 IGAAATGPAL-----HDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFD 327
+GA +GP + + G++ Y E+ + + +G + V Y + G W +D
Sbjct: 252 VGAPISGPGIPGRFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQWVAYD 307
Query: 328 DVEAVRVKVAYAKEKKLRGYYVWEVSSDHY 357
D E+V+ K Y K ++L G VW + D +
Sbjct: 308 DQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 162/330 (49%), Gaps = 23/330 (6%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLXXXX 97
FP + ++ L TH++ FA++++ E+ ++ + +T+K +NP + TLL
Sbjct: 21 FPDA-IDPFLCTHVIYTFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPKLKTLLSVGG 77
Query: 98 XXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKE 157
+A R+ FI S R +GF GLDL+W RDK ++ L KE
Sbjct: 78 WNFGPERFSK-IASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPG-RRDKRHLTTLVKE 135
Query: 158 WRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQ 217
+A EA+ + QL+L+A V+ ++ Y + I ++L+++ ++T ++ W+
Sbjct: 136 MKAEFIREAQ--AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHG-AWR 192
Query: 218 NFTGAHAALYDPNS-----VSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNG 272
G H+ L+ N SN +Y ++ + G A+KLV+ +P +G ++TL + +
Sbjct: 193 QTVGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSKTD- 251
Query: 273 IGAAATGPAL-----HDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFD 327
+GA +GP + + G++ Y E+ + + +G + V Y + G W +D
Sbjct: 252 VGAPVSGPGIPGRFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQWVAYD 307
Query: 328 DVEAVRVKVAYAKEKKLRGYYVWEVSSDHY 357
D E+V+ K Y K ++L G VW + D +
Sbjct: 308 DQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 117 bits (294), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 162/330 (49%), Gaps = 23/330 (6%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLXXXX 97
FP + ++ L TH++ FA++++ E+ ++ + +T+K +NP + TLL
Sbjct: 21 FPDA-IDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPKLKTLLSVGG 77
Query: 98 XXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKE 157
+A R+ FI S R +GF GLDL+W RDK ++ L KE
Sbjct: 78 WNFGPERFSA-IASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPG-RRDKRHLTTLVKE 135
Query: 158 WRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQ 217
+A EA+ + QL+L+A V+ ++ Y + I ++L+++ ++T ++ W+
Sbjct: 136 MKAEFIREAQ--AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHG-AWR 192
Query: 218 NFTGAHAALYDPNS-----VSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNG 272
G H+ L+ N SN +Y ++ + G A+KLV+ +P +G ++TL + +
Sbjct: 193 QTVGHHSPLFAGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSKTD- 251
Query: 273 IGAAATGPAL-----HDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFD 327
+GA +GP + + G++ Y E+ + + +G + V Y + G W +D
Sbjct: 252 VGAPVSGPGVPGRFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQWVAYD 307
Query: 328 DVEAVRVKVAYAKEKKLRGYYVWEVSSDHY 357
D E+V+ K Y K ++L G VW + D +
Sbjct: 308 DQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 161/330 (48%), Gaps = 23/330 (6%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLXXXX 97
FP + ++ L TH++ FA++++ E+ ++ + +T+K +NP++ TLL
Sbjct: 21 FPDA-IDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPNLKTLLSVGG 77
Query: 98 XXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKE 157
+A R+ FI S R +GF GLDL+W RDK ++ L KE
Sbjct: 78 WNFGSERFSK-IASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGW-RDKRHLTTLVKE 135
Query: 158 WRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQ 217
+A EA+ + QL+L+A V ++ Y + I ++L+++ ++T ++ W+
Sbjct: 136 MKAEFVREAQ--AGTEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDFHG-GWR 192
Query: 218 NFTGAHAALYDPNS-----VSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNG 272
G H+ L+ NS SN +Y ++ + G A+KLV+ +P +G ++TL
Sbjct: 193 GTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASSSTR- 251
Query: 273 IGAAATGPAL-----HDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFD 327
+GA +GP + + G++ Y E+ + + +G + V Y + G W +D
Sbjct: 252 VGAPISGPGIPGQFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQWVAYD 307
Query: 328 DVEAVRVKVAYAKEKKLRGYYVWEVSSDHY 357
D E+V+ K Y K ++L G VW + D +
Sbjct: 308 DQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 162/330 (49%), Gaps = 23/330 (6%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLXXXX 97
FP + ++ L TH++ FA++++ E+ ++ + +T+K +NP++ TLL
Sbjct: 21 FPDA-IDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPNLKTLLSVGG 77
Query: 98 XXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKE 157
+A R+ FI S R +GF GLDL+W RDK ++ L KE
Sbjct: 78 WNFGSERFSK-IASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGW-RDKRHLTTLVKE 135
Query: 158 WRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQ 217
+A EA+ + QL+L+A V ++ Y + I ++L+++ ++T ++ W+
Sbjct: 136 MKAEFVREAQ--AGTEQLLLSAAVPAGKIAIDRGYDIAQISRHLDFISLLTYDFHG-GWR 192
Query: 218 NFTGAHAALYDPNS-----VSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNG 272
G H+ L+ NS SN +Y ++ + G A+KLV+ +P +G ++TL + +
Sbjct: 193 GTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASSKTD- 251
Query: 273 IGAAATGPAL-----HDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFD 327
+GA +GP + + G + Y E+ + + +G + V Y + G W +D
Sbjct: 252 VGAPISGPGIPGQFTKEKGTLAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQWVAYD 307
Query: 328 DVEAVRVKVAYAKEKKLRGYYVWEVSSDHY 357
D E+V+ K Y K ++L G VW + D +
Sbjct: 308 DQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 165/330 (50%), Gaps = 23/330 (6%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLXXXX 97
FP + ++ L TH++ FA++++ E+ ++ + +T+K +NP++ TLL
Sbjct: 21 FPDA-IDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPNLKTLLSVGG 77
Query: 98 XXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKE 157
+A R+ FI S R +GF GLDL+W RDK ++ L KE
Sbjct: 78 WNFGPQRFSK-IASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPG-RRDKRHLTTLVKE 135
Query: 158 WRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQ 217
+A EA+ + QL+L+A V+ ++ Y + I ++L+++ ++T ++ W+
Sbjct: 136 MKAEFIREAQ--AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHG-AWR 192
Query: 218 NFTGAHAALY----DPNS-VSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNG 272
G H+ L+ D +S SN +Y ++ + G A+KLV+ +P +G ++TL + +
Sbjct: 193 QTVGHHSPLFRGQEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGKSFTLASSKTD- 251
Query: 273 IGAAATGPAL-----HDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFD 327
+GA +GP + + G++ Y E+ + ++ G + V Y + G W +D
Sbjct: 252 VGAPVSGPGIPGQFTKEKGILAYYEICDFLQ--GATTHRFRDQQ--VPYATKGNQWVAYD 307
Query: 328 DVEAVRVKVAYAKEKKLRGYYVWEVSSDHY 357
D E+V+ K Y K ++L G VW + D +
Sbjct: 308 DQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 161/330 (48%), Gaps = 23/330 (6%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLXXXX 97
FP + ++ L TH++ FA++++ E+ ++ + +T+K +NP++ TLL
Sbjct: 21 FPDA-IDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPNLKTLLSVGG 77
Query: 98 XXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKE 157
+A R+ FI S R +GF GLDL+W RDK ++ L KE
Sbjct: 78 WNYGSQRFSK-IASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLWPGW-RDKRHLTTLVKE 135
Query: 158 WRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQ 217
+A EA+ + QL+L+A V ++ Y + I ++L+++ ++T ++ W+
Sbjct: 136 MKAEFVREAQ--AGTEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDFHG-AWR 192
Query: 218 NFTGAHAALYDPNS-----VSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNG 272
G H+ L+ N SN +Y ++ + G A+KLV+ +P +G ++TL + +
Sbjct: 193 QTVGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASSKTD- 251
Query: 273 IGAAATGPALHD-----DGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFD 327
+GA +GP + G++ Y E+ + + +G + V Y + G W +D
Sbjct: 252 VGAPISGPGIPGRFTKWKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQWVAYD 307
Query: 328 DVEAVRVKVAYAKEKKLRGYYVWEVSSDHY 357
D E+V+ K Y K ++L G VW + D +
Sbjct: 308 DQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 154/335 (45%), Gaps = 23/335 (6%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLXXXX 97
F +++ L THL+ FA + + E++ + + + + +K KN + TLL
Sbjct: 20 FKPGNIDPCLCTHLIYAFAGMQNN--EITYTHEQDLRDYEALNGLKDKNTELKTLLAIGG 77
Query: 98 XXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSW----NQANTSRDKYNIGI 153
M P R+ FI S I+ R Y F GL+L W ++ + +DK+ +
Sbjct: 78 WKFGPAPFSA-MVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQYPGSRGSPPKDKHLFSV 136
Query: 154 LFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSS 213
L KE R A E+ +L+LT+ A + Y + + Q L+++ V+T +
Sbjct: 137 LVKEMRKAFEEESVEKDI-PRLLLTSTGAGIIDVIKSGYKIPELSQSLDYIQVMTYDLHD 195
Query: 214 PTWQNFTGAHAALY-DPNSVS-----NTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVK 267
P +TG ++ LY P + N + I+ W + G +++KL++ P YG+ + L
Sbjct: 196 PK-DGYTGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAASEKLIVGFPAYGHTFILSD 254
Query: 268 PEDNGIGAA--ATGPA---LHDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKI 322
P GIGA +TGP + GL+ Y EV + V +++ V Y G
Sbjct: 255 PSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFLNEGATEV---WDAPQEVPYAYQGNE 311
Query: 323 WFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHY 357
W G+D+V + ++K + K+ L G VW + D +
Sbjct: 312 WVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDDF 346
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 155/332 (46%), Gaps = 22/332 (6%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLXXXX 97
F +++ L +HL+ FA + + ++ + E +++K KNP + LL
Sbjct: 21 FTPENIDPFLCSHLIYSFASIENN--KVIIKDKSEVMLYQTINSLKTKNPKLKILLSIGG 78
Query: 98 XXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKE 157
M + + R FI+S I R + F GLD+SW + ++ + +L E
Sbjct: 79 YLFGSKGFHP-MVDSSTSRLEFINSIILFLRNHNFDGLDVSWIYPD-QKENTHFTVLIHE 136
Query: 158 WRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQ 217
A + S++ +L+LTA V+ +Y V+ + + L+++++++ ++ +W+
Sbjct: 137 LAEAFQKDF-TKSTKERLLLTAGVSAGRQMIDNSYQVEKLAKDLDFINLLSFDFHG-SWE 194
Query: 218 N--FTGAHAAL------YDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPE 269
TG ++ L P+S N EY + WI +G+ ++K+V+ +P YG+++TL E
Sbjct: 195 KPLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKGMPSEKVVMGIPTYGHSFTLASAE 254
Query: 270 DN----GIGAAATGPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFG 325
G A GP G + Y E+ +K G + + + V Y G W G
Sbjct: 255 TTVGAPASGPGAAGPITESSGFLAYYEICQFLK--GAKITRLQDQQ--VPYAVKGNQWVG 310
Query: 326 FDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHY 357
+DDV+++ KV + K L G +W + D +
Sbjct: 311 YDDVKSMETKVQFLKNLNLGGAMIWSIDMDDF 342
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 121/273 (44%), Gaps = 31/273 (11%)
Query: 109 MAGNPSFRKYFIDSSIKIARLYGFQGLDLSWN-------QANTSR--DKYNIGILFKEWR 159
+A + R+ F +S++ R Y F G+DL W N+ R DK N +L + R
Sbjct: 141 VAATAATREVFANSAVDFLRKYNFDGVDLDWEYPVSGGLDGNSKRPEDKQNYTLLLSKIR 200
Query: 160 AAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQNF 219
L+A + +LT S + AA + I ++W++++T +++ WQ
Sbjct: 201 EK--LDAAGAVDGKKYLLTIASGAS-ATYAANTELAKIAAIVDWINIMTYDFNG-AWQKI 256
Query: 220 TGAHAAL-YDPNSVS---------NTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPE 269
+ +A L YDP + + N G ++ G+ A KLVL +PFYG W
Sbjct: 257 SAHNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDAGVPAAKLVLGVPFYGRGWDGCAQA 316
Query: 270 DNGIGAAATGPA---LHDDGLVTYKEVK-NHIKNYGPNVQVMYNSTYVVNYC--SIGKIW 323
NG TG + + G + +++ N+I G +N T V Y + K +
Sbjct: 317 GNGQYQTCTGGSSVGTWEAGSFDFYDLEANYINKNG--YTRYWNDTAKVPYLYNASNKRF 374
Query: 324 FGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDH 356
+DD E+V K AY K K L G WE+S D
Sbjct: 375 ISYDDAESVGYKTAYIKSKGLGGAMFWELSGDR 407
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 113/247 (45%), Gaps = 17/247 (6%)
Query: 116 RKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQL 175
RK F D+S+K+ + GF G+D++W + + +L K R A+ + + + +
Sbjct: 112 RKKFADTSLKLMKDLGFDGIDINWEYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKF 171
Query: 176 ILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALY----DPNS 231
+LT P + + +YL++ +++ ++S +W +G + ++ P S
Sbjct: 172 LLTIASPAGP-QNYNKLKLAEMDKYLDFWNLMAYDFSG-SWDKVSGHMSNVFPSTTKPES 229
Query: 232 VS-NTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNGIGAA--ATGPALHDDGLV 288
+++ + ++I+ G+ A+K+VL +P YG A+ +GIG + G ++G+
Sbjct: 230 TPFSSDKAVKDYIKAGVPANKIVLGMPLYGRAFAST----DGIGTSFNGVGGGSWENGVW 285
Query: 289 TYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVAYAKEKKLRGYY 348
YK++ G V + + +Y + +D V+ K Y + + G
Sbjct: 286 DYKDMPQQ----GAQVTELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGM 341
Query: 349 VWEVSSD 355
WE SSD
Sbjct: 342 WWESSSD 348
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 112/247 (45%), Gaps = 17/247 (6%)
Query: 116 RKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQL 175
RK F D+S+K+ + GF G+D+ W + + +L K R A+ + + + +
Sbjct: 112 RKKFADTSLKLMKDLGFDGIDIDWQYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKF 171
Query: 176 ILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALY----DPNS 231
+LT P + + +YL++ +++ ++S +W +G + ++ P S
Sbjct: 172 LLTIASPAGP-QNYNKLKLAEMDKYLDFWNLMAYDFSG-SWDKVSGHMSNVFPSTTKPES 229
Query: 232 VS-NTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNGIGAA--ATGPALHDDGLV 288
+++ + ++I+ G+ A+K+VL +P YG A+ +GIG + G ++G+
Sbjct: 230 TPFSSDKAVKDYIKAGVPANKIVLGMPLYGRAFAST----DGIGTSFNGVGGGSWENGVW 285
Query: 289 TYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVAYAKEKKLRGYY 348
YK++ G V + + +Y + +D V+ K Y + + G
Sbjct: 286 DYKDMPQQ----GAQVTELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGM 341
Query: 349 VWEVSSD 355
WE SSD
Sbjct: 342 WWESSSD 348
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 112/247 (45%), Gaps = 17/247 (6%)
Query: 116 RKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQL 175
RK F D+S+K+ + GF G+D+ W + + +L K R A+ + + + +
Sbjct: 112 RKKFADTSLKLMKDLGFDGIDIDWEYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKF 171
Query: 176 ILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALY----DPNS 231
+LT P + + +YL++ +++ ++S +W +G + ++ P S
Sbjct: 172 LLTIASPAGP-QNYNKLKLAEMDKYLDFWNLMAYDFSG-SWDKVSGHMSNVFPSTTKPES 229
Query: 232 VS-NTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNGIGAA--ATGPALHDDGLV 288
+++ + ++I+ G+ A+K+VL +P YG A+ +GIG + G ++G+
Sbjct: 230 TPFSSDKAVKDYIKAGVPANKIVLGMPLYGRAFAST----DGIGTSFNGVGGGSWENGVW 285
Query: 289 TYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVAYAKEKKLRGYY 348
YK++ G V + + +Y + +D V+ K Y + + G
Sbjct: 286 DYKDMPQQ----GAQVTELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGM 341
Query: 349 VWEVSSD 355
WE SSD
Sbjct: 342 WWESSSD 348
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 111/249 (44%), Gaps = 21/249 (8%)
Query: 116 RKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQL 175
RK F +++K+ + GF GLD+ W + + +L KE R A+ + N+
Sbjct: 153 RKNFAKTAVKLLQDLGFDGLDIDWEYPENDQQANDFVLLLKEVRTALDSYSAANAGGQHF 212
Query: 176 ILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYDPNSVS-- 233
+LT P + D + Q L++ +++ +Y+ ++ + +G A +Y+ S
Sbjct: 213 LLTVASPAGPDKIKVLHLKD-MDQQLDFWNLMAYDYAG-SFSSLSGHQANVYNDTSNPLS 270
Query: 234 ---NTEYGITEWIEEGLSADKLVLCLPFYGYAWTLV----KPEDNGIGAAATGPALHDDG 286
NT+ + + G+ A+K+VL +P YG ++ KP NG+G + ++G
Sbjct: 271 TPFNTQTALDLYRAGGVPANKIVLGMPLYGRSFANTDGPGKPY-NGVGQGS-----WENG 324
Query: 287 LVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVAYAKEKKLRG 346
+ YK + G V+ + +Y + K +D+ + +K Y K L G
Sbjct: 325 VWDYKA----LPQAGATEHVLPDIMASYSYDATNKFLISYDNPQVANLKSGYIKSLGLGG 380
Query: 347 YYVWEVSSD 355
W+ SSD
Sbjct: 381 AMWWDSSSD 389
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 111/249 (44%), Gaps = 21/249 (8%)
Query: 116 RKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQL 175
RK F +++K+ + GF GLD+ W + + +L +E R A+ + N+
Sbjct: 115 RKNFAKTAVKLLQDLGFDGLDIDWEYPENDQQANDFVLLLREVRTALDSYSAANAGGQHF 174
Query: 176 ILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYDPNSVS-- 233
+LT P + D + Q L++ +++ +Y+ ++ + +G A +Y+ S
Sbjct: 175 LLTVASPAGPDKIKVLHLKD-MDQQLDFWNLMAYDYAG-SFSSLSGHQANVYNDTSNPLS 232
Query: 234 ---NTEYGITEWIEEGLSADKLVLCLPFYGYAWTLV----KPEDNGIGAAATGPALHDDG 286
NT+ + + G+ A+K+VL +P YG ++ KP NG+G + ++G
Sbjct: 233 TPFNTQTALDLYRAGGVPANKIVLGMPLYGRSFANTDGPGKPY-NGVGQGS-----WENG 286
Query: 287 LVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVAYAKEKKLRG 346
+ YK + G V+ + +Y + K +D+ + +K Y K L G
Sbjct: 287 VWDYKA----LPQAGATEHVLPDIMASYSYDATNKFLISYDNPQVANLKSGYIKSLGLGG 342
Query: 347 YYVWEVSSD 355
W+ SSD
Sbjct: 343 AMWWDSSSD 351
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 109/247 (44%), Gaps = 17/247 (6%)
Query: 116 RKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARN--NSSQS 173
R F ++++ + +GF G+D+ W + D N+ +L + R + + N
Sbjct: 130 RATFAKTAVEFMKDWGFDGIDVDWEYPASETDANNMVLLLQRVRQELDSYSATYANGYHF 189
Query: 174 QLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALY----DP 229
QL + A S + + S+ L+ ++++ +Y+ +W + +G LY +P
Sbjct: 190 QLSIAAPAGPSHYNVLKLAQLGSV---LDNINLMAYDYAG-SWDSVSGHQTNLYPSTSNP 245
Query: 230 NSVS-NTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNGIGAAATGPALHDDGLV 288
+S +T+ + +I G+ A K++L +P YG A V + G + G + G+
Sbjct: 246 SSTPFSTKAAVDAYIAAGVPASKIILGMPIYGRA--FVGTDGPGKPYSTIGEGSWESGIW 303
Query: 289 TYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVAYAKEKKLRGYY 348
YK + G V + +Y S + +D + VR KV+YAK L G
Sbjct: 304 DYKV----LPKAGATVITDSAAGATYSYDSSSRTMISYDTPDMVRTKVSYAKGLGLGGSM 359
Query: 349 VWEVSSD 355
WE S+D
Sbjct: 360 FWEASAD 366
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 79/385 (20%), Positives = 153/385 (39%), Gaps = 72/385 (18%)
Query: 38 FPVSDVNSA---LFTHLMCGFADVNST---SYELSLSPSDEKQFSNFTDTVKIKNPSITT 91
FPVS++ A TH+ F D+NS +++ + + + + N +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 92 LLXX-----XXXXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSR 146
+ P+ R F S ++I + YGF G+D++W +
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYPQAAE 150
Query: 147 DKYNIGILFKEWRAAVALEARNNSSQS---QLILTAKVAYSPLSTAAAYPVDSIRQYLNW 203
I L +E R + + + Q+ QL + LS + + I L++
Sbjct: 151 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYS-KLAQIVAPLDY 208
Query: 204 VHVITTEYSSPTWQNFTGAHAALYDP-------NSVSNTEYGITEWIE------------ 244
++++T + + P W+ T AAL+ N++ G + W E
Sbjct: 209 INLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWS-WEELTRAFPSPFSLT 266
Query: 245 -----------EGLSADKLVLCLPFYGYAWTLVKPEDNGIGAAATGPAL----------- 282
EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 267 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLV 326
Query: 283 --------HDDGLVTYKEVKNHIK-NYGPNVQVMYNSTYVVNYC--SIGKIWFGFDDVEA 331
D + +Y++++ ++ NYG Q ++N Y + ++ +DD E+
Sbjct: 327 GCEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAES 384
Query: 332 VRVKVAYAKEKKLRGYYVWEVSSDH 356
+ K Y K+++L G W + D+
Sbjct: 385 FKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 79/385 (20%), Positives = 152/385 (39%), Gaps = 72/385 (18%)
Query: 38 FPVSDVNSA---LFTHLMCGFADVNST---SYELSLSPSDEKQFSNFTDTVKIKNPSITT 91
FPVS++ A TH+ F D+NS +++ + + + + N +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 92 LLXX-----XXXXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSR 146
+ P+ R F S ++I + YGF G+D+ W +
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWQYPQAAE 150
Query: 147 DKYNIGILFKEWRAAVALEARNNSSQS---QLILTAKVAYSPLSTAAAYPVDSIRQYLNW 203
I L +E R + + + Q+ QL + LS + + I L++
Sbjct: 151 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYS-KLAQIVAPLDY 208
Query: 204 VHVITTEYSSPTWQNFTGAHAALYDP-------NSVSNTEYGITEWIE------------ 244
++++T + + P W+ T AAL+ N++ G + W E
Sbjct: 209 INLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWS-WEELTRAFPSPFSLT 266
Query: 245 -----------EGLSADKLVLCLPFYGYAWTLVKPEDNGIGAAATGPAL----------- 282
EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 267 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLV 326
Query: 283 --------HDDGLVTYKEVKNHIK-NYGPNVQVMYNSTYVVNYC--SIGKIWFGFDDVEA 331
D + +Y++++ ++ NYG Q ++N Y + ++ +DD E+
Sbjct: 327 GCEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAES 384
Query: 332 VRVKVAYAKEKKLRGYYVWEVSSDH 356
+ K Y K+++L G W + D+
Sbjct: 385 FKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 79/385 (20%), Positives = 152/385 (39%), Gaps = 72/385 (18%)
Query: 38 FPVSDVNSA---LFTHLMCGFADVNST---SYELSLSPSDEKQFSNFTDTVKIKNPSITT 91
FPVS++ A TH+ F D+NS +++ + + + + N +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 92 LLXX-----XXXXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSR 146
+ P+ R F S ++I + YGF G+D+ W +
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQAAE 150
Query: 147 DKYNIGILFKEWRAAVALEARNNSSQS---QLILTAKVAYSPLSTAAAYPVDSIRQYLNW 203
I L +E R + + + Q+ QL + LS + + I L++
Sbjct: 151 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYS-KLAQIVAPLDY 208
Query: 204 VHVITTEYSSPTWQNFTGAHAALYDP-------NSVSNTEYGITEWIE------------ 244
++++T + + P W+ T AAL+ N++ G + W E
Sbjct: 209 INLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWS-WEELTRAFPSPFSLT 266
Query: 245 -----------EGLSADKLVLCLPFYGYAWTLVKPEDNGIGAAATGPAL----------- 282
EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 267 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLV 326
Query: 283 --------HDDGLVTYKEVKNHIK-NYGPNVQVMYNSTYVVNYC--SIGKIWFGFDDVEA 331
D + +Y++++ ++ NYG Q ++N Y + ++ +DD E+
Sbjct: 327 GCEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAES 384
Query: 332 VRVKVAYAKEKKLRGYYVWEVSSDH 356
+ K Y K+++L G W + D+
Sbjct: 385 FKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 79/385 (20%), Positives = 153/385 (39%), Gaps = 72/385 (18%)
Query: 38 FPVSDVNSA---LFTHLMCGFADVNST---SYELSLSPSDEKQFSNFTDTVKIKNPSITT 91
FPVS++ A TH+ F D+NS +++ + + + + N +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 92 LLXX-----XXXXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSR 146
+ P+ R F S ++I + YGF G+D++W +
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYPQAAE 150
Query: 147 DKYNIGILFKEWRAAVALEARNNSSQS---QLILTAKVAYSPLSTAAAYPVDSIRQYLNW 203
I L +E R + + + Q+ QL + LS + + I L++
Sbjct: 151 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYS-KLAQIVAPLDY 208
Query: 204 VHVITTEYSSPTWQNFTGAHAALYDP-------NSVSNTEYGITEWIE------------ 244
++++T + + P W+ T AAL+ N++ G + W E
Sbjct: 209 INLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWS-WEELTRAFPSPFSLT 266
Query: 245 -----------EGLSADKLVLCLPFYGYAWTLVKPEDNGIGAAATGPAL----------- 282
EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 267 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLV 326
Query: 283 --------HDDGLVTYKEVKNHIK-NYGPNVQVMYNSTYVVNYC--SIGKIWFGFDDVEA 331
D + +Y++++ ++ NYG Q ++N Y + ++ +DD E+
Sbjct: 327 GCEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAES 384
Query: 332 VRVKVAYAKEKKLRGYYVWEVSSDH 356
+ K Y K+++L G W + D+
Sbjct: 385 FKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/385 (20%), Positives = 152/385 (39%), Gaps = 72/385 (18%)
Query: 38 FPVSDVNSA---LFTHLMCGFADVNST---SYELSLSPSDEKQFSNFTDTVKIKNPSITT 91
FPVS++ A TH+ F D+NS +++ + + + + N +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 92 LLXX-----XXXXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSR 146
+ P+ R F S ++I + YGF G+D+ W +
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRTKFAQSCVRIMKDYGFDGVDIDWEYPQAAE 150
Query: 147 DKYNIGILFKEWRAAVALEARNNSSQS---QLILTAKVAYSPLSTAAAYPVDSIRQYLNW 203
I L +E R + + + Q+ QL + LS + + I L++
Sbjct: 151 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYS-KLAQIVAPLDY 208
Query: 204 VHVITTEYSSPTWQNFTGAHAALYDP-------NSVSNTEYGITEWIE------------ 244
++++T + + P W+ T AAL+ N++ G + W E
Sbjct: 209 INLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWS-WEELTRAFPSPFSLT 266
Query: 245 -----------EGLSADKLVLCLPFYGYAWTLVKPEDNGIGAAATGPAL----------- 282
EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 267 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLV 326
Query: 283 --------HDDGLVTYKEVKNHIK-NYGPNVQVMYNSTYVVNYC--SIGKIWFGFDDVEA 331
D + +Y++++ ++ NYG Q ++N Y + ++ +DD E+
Sbjct: 327 GCEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAES 384
Query: 332 VRVKVAYAKEKKLRGYYVWEVSSDH 356
+ K Y K+++L G W + D+
Sbjct: 385 FKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/385 (20%), Positives = 152/385 (39%), Gaps = 72/385 (18%)
Query: 38 FPVSDVNSA---LFTHLMCGFADVNST---SYELSLSPSDEKQFSNFTDTVKIKNPSITT 91
FPVS++ A TH+ F D+NS +++ + + + + N +K NPS+
Sbjct: 30 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 89
Query: 92 LLXX-----XXXXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSR 146
+ P+ R F S ++I + YGF G+D+ W +
Sbjct: 90 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQAAE 149
Query: 147 DKYNIGILFKEWRAAVALEARNNSSQS---QLILTAKVAYSPLSTAAAYPVDSIRQYLNW 203
I L +E R + + + Q+ QL + LS + + I L++
Sbjct: 150 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYS-KLAQIVAPLDY 207
Query: 204 VHVITTEYSSPTWQNFTGAHAALYDP-------NSVSNTEYGITEWIE------------ 244
++++T + + P W+ T AAL+ N++ G + W E
Sbjct: 208 INLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWS-WEELTRAFPSPFSLT 265
Query: 245 -----------EGLSADKLVLCLPFYGYAWTLVKPEDNGIGAAATGPAL----------- 282
EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 266 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLV 325
Query: 283 --------HDDGLVTYKEVKNHIK-NYGPNVQVMYNSTYVVNYC--SIGKIWFGFDDVEA 331
D + +Y++++ ++ NYG Q ++N Y + ++ +DD E+
Sbjct: 326 GCEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAES 383
Query: 332 VRVKVAYAKEKKLRGYYVWEVSSDH 356
+ K Y K+++L G W + D+
Sbjct: 384 FKYKAKYIKQQQLGGVMFWHLGQDN 408
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 78/385 (20%), Positives = 152/385 (39%), Gaps = 72/385 (18%)
Query: 38 FPVSDVNSA---LFTHLMCGFADVNST---SYELSLSPSDEKQFSNFTDTVKIKNPSITT 91
FPVS++ A TH+ F D+NS +++ + + + + N +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 92 LLXX-----XXXXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSR 146
+ P+ R F S ++I + YGF G+++ W +
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDWEYPQAAE 150
Query: 147 DKYNIGILFKEWRAAVALEARNNSSQS---QLILTAKVAYSPLSTAAAYPVDSIRQYLNW 203
I L +E R + + + Q+ QL + LS + + I L++
Sbjct: 151 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYS-KLAQIVAPLDY 208
Query: 204 VHVITTEYSSPTWQNFTGAHAALYDP-------NSVSNTEYGITEWIE------------ 244
++++T + + P W+ T AAL+ N++ G + W E
Sbjct: 209 INLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWS-WEELTRAFPSPFSLT 266
Query: 245 -----------EGLSADKLVLCLPFYGYAWTLVKPEDNGIGAAATGPAL----------- 282
EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 267 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLV 326
Query: 283 --------HDDGLVTYKEVKNHIK-NYGPNVQVMYNSTYVVNYC--SIGKIWFGFDDVEA 331
D + +Y++++ ++ NYG Q ++N Y + ++ +DD E+
Sbjct: 327 GCEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAES 384
Query: 332 VRVKVAYAKEKKLRGYYVWEVSSDH 356
+ K Y K+++L G W + D+
Sbjct: 385 FKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 79/374 (21%), Positives = 156/374 (41%), Gaps = 71/374 (18%)
Query: 49 THLMCGFADV---NSTSYELSLSPSDEK-QFSNFTDTVKIKNPSITTLLXXXXXXXXXXX 104
+HL+ G+A + N +Y ++ + K QFS T ++K K P + LL
Sbjct: 34 SHLVYGYAGLRGENLQAYSMNENLDIYKHQFSEVT-SLKRKYPHLKVLLSVGGDHDIDPD 92
Query: 105 XXXX----MAGNPSFRKYFIDSSIKIARLYGFQGLDLSWN-QANTSRDKY-NIGI----- 153
+ G + FI S+ ++ + YGF GLDL++ N R + ++G+
Sbjct: 93 HPNKYIDLLEGEKVRQIGFIRSAYELVKTYGFDGLDLAYQFPKNKPRKVHGDLGLAWKSI 152
Query: 154 ---------------LFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIR 198
L KE A+ + +++ +L+ V + +++ + + ++
Sbjct: 153 KKLFTGDFIVDPHAALHKEQFTALVRDVKDSLRADGFLLSLTVLPN-VNSTWYFDIPALN 211
Query: 199 QYLNWVHVITTEYSSPTWQNFTGAHAA-LYDPNSVS------NTEYGITEWIEEGLSADK 251
+++V++ T ++ +P ++A +Y P+ N ++ + W+ +G ++K
Sbjct: 212 GLVDFVNLATFDFLTPARNPEEADYSAPIYHPDGSKDRLAHLNADFQVEYWLSQGFPSNK 271
Query: 252 LVLCLPFYGYAWTLVKPEDNGI----------GAAATGPALHDDGLVTYKEVKNHIKNYG 301
+ L + YG AW L K D+G+ G A G GL++Y E+ + N
Sbjct: 272 INLGVATYGNAWKLTK--DSGLEGVPVVPETSGPAPEGFQSQKPGLLSYAEICGKLSN-- 327
Query: 302 PNVQVMYNSTYVVNYCS------------------IGKIWFGFDDVEAVRVKVAYAKEKK 343
P Q + + + S IW +DD ++ K AYA+ K
Sbjct: 328 PQNQFLKGNESPLRRVSDPTKRFGGIAYRPVDGQITEGIWVSYDDPDSASNKAAYARVKN 387
Query: 344 LRGYYVWEVSSDHY 357
L G ++++S D +
Sbjct: 388 LGGVALFDLSYDDF 401
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 112/270 (41%), Gaps = 37/270 (13%)
Query: 118 YFIDSSIKIARLYG-----------FQGLDLSWNQANTSRDKYNIG---------ILFKE 157
+F+ +K R G F G+D+ W N+G +L KE
Sbjct: 282 FFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKE 341
Query: 158 WRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTE-YSSPTW 216
RA + + + +L + A Y V + ++ + +++ + Y +
Sbjct: 342 LRAMLDQLSAETGRKYELTSAISAGKDKIDKVA-YNV--AQNSMDHIFLMSYDFYGAFDL 398
Query: 217 QNF---TGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNGI 273
+N T +A + P++ T G+ + +G+ K+V+ YG WT V N I
Sbjct: 399 KNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI 458
Query: 274 --GAAATGPALH--DDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYC---SIGKIWFGF 326
ATGP ++G+V Y+++ + + Q Y++T Y S G + F
Sbjct: 459 PFTGTATGPVKGTWENGIVDYRQIASQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITF 515
Query: 327 DDVEAVRVKVAYAKEKKLRGYYVWEVSSDH 356
DD +V+ K Y +K+L G + WE+ +D+
Sbjct: 516 DDARSVQAKGKYVLDKQLGGLFSWEIDADN 545
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 120/284 (42%), Gaps = 47/284 (16%)
Query: 118 YFIDSSIKIARLYG-----------FQGLDLSWNQANTSRDKYNIG---------ILFKE 157
+F+ +K R G F G+D+ W N+G +L KE
Sbjct: 259 FFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKE 318
Query: 158 WRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSI-----RQYLNWVHVITTE-Y 211
RA L+ + + + LT+ + +A +D + + ++ + +++ + Y
Sbjct: 319 LRAM--LDQLSTETGRKYELTSAI------SAGKDKIDKVAYNVAQNSMDHIFLMSYDFY 370
Query: 212 SSPTWQNF---TGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKP 268
+ +N T +A + P++ T G+ + +G+ K+V+ YG WT V
Sbjct: 371 GAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNG 430
Query: 269 EDNGI--GAAATGPALH--DDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYC---SIGK 321
N I ATGP ++G+V Y+++ + Q Y++T Y S G
Sbjct: 431 YQNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMS--GEWQYTYDATAEAPYVFKPSTGD 488
Query: 322 IWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHYWMLSQAAA 365
+ FDD +V+ K Y +K+L G + WE+ +D+ +L+ A
Sbjct: 489 L-ITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNA 531
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 116/279 (41%), Gaps = 37/279 (13%)
Query: 118 YFIDSSIKIARLYG-----------FQGLDLSWNQANTSRDKYNIG---------ILFKE 157
+F+ +K R G F G+D+ W N+G +L KE
Sbjct: 259 FFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKE 318
Query: 158 WRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTE-YSSPTW 216
RA + + + +L + A Y V + ++ + +++ + Y +
Sbjct: 319 LRAMLDQLSAETGRKYELTSAISAGKDKIDKVA-YNV--AQNSMDHIFLMSYDFYGAFDL 375
Query: 217 QNF---TGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNGI 273
+N T +A + P++ T G+ + +G+ K+V+ YG WT V N I
Sbjct: 376 KNLGHQTALNAPAWKPDTAYTTVNGVNALLTQGVKPGKIVVGTAMYGRGWTGVNGYQNNI 435
Query: 274 --GAAATGPALH--DDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYC---SIGKIWFGF 326
ATGP ++G+V Y+++ + + Q Y++T Y S G + F
Sbjct: 436 PFTGTATGPVKGTWENGIVDYRQIASQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITF 492
Query: 327 DDVEAVRVKVAYAKEKKLRGYYVWEVSSDHYWMLSQAAA 365
DD +V+ K Y +K+L G + WE+ +D+ +L+ A
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNA 531
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 112/270 (41%), Gaps = 37/270 (13%)
Query: 118 YFIDSSIKIARLYG-----------FQGLDLSWNQANTSRDKYNIG---------ILFKE 157
+F+ +K R G F G+D+ W N+G +L KE
Sbjct: 259 FFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKE 318
Query: 158 WRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTE-YSSPTW 216
RA + + + +L + A Y V + ++ + +++ + Y +
Sbjct: 319 LRAMLDQLSAETGRKYELTSAISAGKDKIDKVA-YNV--AQNSMDHIFLMSYDFYGAFDL 375
Query: 217 QNF---TGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNGI 273
+N T +A + P++ T G+ + +G+ K+V+ YG WT V N I
Sbjct: 376 KNLGHQTALNAPAWKPDTAYTTVNGVNALLTQGVKPGKIVVGTAMYGRGWTGVNGYQNNI 435
Query: 274 --GAAATGPALH--DDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYC---SIGKIWFGF 326
ATGP ++G+V Y+++ + + Q Y++T Y S G + F
Sbjct: 436 PFTGTATGPVKGTWENGIVDYRQIASQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITF 492
Query: 327 DDVEAVRVKVAYAKEKKLRGYYVWEVSSDH 356
DD +V+ K Y +K+L G + WE+ +D+
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 112/270 (41%), Gaps = 37/270 (13%)
Query: 118 YFIDSSIKIARLYG-----------FQGLDLSWNQANTSRDKYNIG---------ILFKE 157
+F+ +K R G F G+D++W N+G +L KE
Sbjct: 259 FFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIAWEFPGGKGANPNLGSPQDGETYVLLMKE 318
Query: 158 WRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTE-YSSPTW 216
RA + + + +L + A Y V + ++ + +++ + Y +
Sbjct: 319 LRAMLDQLSVETGRKYELTSAISAGKDKIDKVA-YNV--AQNSMDHIFLMSYDFYGAFDL 375
Query: 217 QNF---TGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNGI 273
+N T +A + P++ T G+ + +G+ K+V+ YG WT V N I
Sbjct: 376 KNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI 435
Query: 274 --GAAATGPALH--DDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYC---SIGKIWFGF 326
ATGP ++G+V Y+++ + Q Y++T Y S G + F
Sbjct: 436 PFTGTATGPVKGTWENGIVDYRQIAGQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITF 492
Query: 327 DDVEAVRVKVAYAKEKKLRGYYVWEVSSDH 356
DD +V+ K Y +K+L G + WE+ +D+
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 105/268 (39%), Gaps = 33/268 (12%)
Query: 118 YFIDSSIKIARLYG-----------FQGLDLSWNQANTSRDKYNIG---------ILFKE 157
+F+ +K R G F G+D+ W N+G +L KE
Sbjct: 259 FFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKE 318
Query: 158 WRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPV--DSIRQYLNWVHVITTEYSSPT 215
RA + + + +L + A Y V +S+ + +
Sbjct: 319 LRAMLDQLSVETGRKYELTSAISAGKDKIDKVA-YNVAQNSMDHIFLMSYAFYGAFDLKN 377
Query: 216 WQNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNGI-- 273
+ T +A + P++ T G+ + +G+ K+V+ YG WT V N I
Sbjct: 378 LGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPF 437
Query: 274 GAAATGPALH--DDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYC---SIGKIWFGFDD 328
ATGP ++G+V Y+++ + Q Y++T Y S G + FDD
Sbjct: 438 TGTATGPVKGTWENGIVDYRQIAGQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDD 494
Query: 329 VEAVRVKVAYAKEKKLRGYYVWEVSSDH 356
+V+ K Y +K+L G + WE+ +D+
Sbjct: 495 ARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 115/279 (41%), Gaps = 37/279 (13%)
Query: 118 YFIDSSIKIARLYG-----------FQGLDLSWNQANTSRDKYNIG---------ILFKE 157
+F+ +K R G F G+D+ W N+G +L KE
Sbjct: 259 FFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKE 318
Query: 158 WRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTE-YSSPTW 216
RA + + + +L + A Y V + ++ + +++ + Y +
Sbjct: 319 LRAMLDQLSVETGRKYELTSAISAGKDKIDKVA-YNV--AQNSMDHIFLMSFDFYGAFDL 375
Query: 217 QNF---TGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNGI 273
+N T +A + P++ T G+ + +G+ K+V+ YG WT V N I
Sbjct: 376 KNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI 435
Query: 274 --GAAATGPALH--DDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYC---SIGKIWFGF 326
ATGP ++G+V Y+++ + Q Y++T Y S G + F
Sbjct: 436 PFTGTATGPVKGTWENGIVDYRQIAGQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITF 492
Query: 327 DDVEAVRVKVAYAKEKKLRGYYVWEVSSDHYWMLSQAAA 365
DD +V+ K Y +K+L G + WE+ +D+ +L+ A
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNA 531
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 111/270 (41%), Gaps = 37/270 (13%)
Query: 118 YFIDSSIKIARLYG-----------FQGLDLSWNQANTSRDKYNIG---------ILFKE 157
+F+ +K R G F G+D+ W N+G +L KE
Sbjct: 259 FFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWQFPGGKGANPNLGSPQDGETYVLLMKE 318
Query: 158 WRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTE-YSSPTW 216
RA + + + +L + A Y V + ++ + +++ + Y +
Sbjct: 319 LRAMLDQLSVETGRKYELTSAISAGKDKIDKVA-YNV--AQNSMDHIFLMSYDFYGAFDL 375
Query: 217 QNF---TGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNGI 273
+N T +A + P++ T G+ + +G+ K+V+ YG WT V N I
Sbjct: 376 KNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI 435
Query: 274 --GAAATGPALH--DDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYC---SIGKIWFGF 326
ATGP ++G+V Y+++ + Q Y++T Y S G + F
Sbjct: 436 PFTGTATGPVKGTWENGIVDYRQIAGQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITF 492
Query: 327 DDVEAVRVKVAYAKEKKLRGYYVWEVSSDH 356
DD +V+ K Y +K+L G + WE+ +D+
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 115/279 (41%), Gaps = 37/279 (13%)
Query: 118 YFIDSSIKIARLYG-----------FQGLDLSWNQANTSRDKYNIG---------ILFKE 157
+F+ +K R G F G+D+ W N+G +L KE
Sbjct: 259 FFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKE 318
Query: 158 WRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTE-YSSPTW 216
RA + + + +L + A Y V + ++ + +++ + Y +
Sbjct: 319 LRAMLDQLSVETGRKYELTSAISAGKDKIDKVA-YNV--AQNSMDHIFLMSYDFYGAFDL 375
Query: 217 QNF---TGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNGI 273
+N T +A + P++ T G+ + +G+ K+V+ YG WT V N I
Sbjct: 376 KNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI 435
Query: 274 --GAAATGPALH--DDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYC---SIGKIWFGF 326
ATGP ++G+V Y+++ + Q Y++T Y S G + F
Sbjct: 436 PFTGTATGPVKGTWENGIVDYRQIAGQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITF 492
Query: 327 DDVEAVRVKVAYAKEKKLRGYYVWEVSSDHYWMLSQAAA 365
DD +V+ K Y +K+L G + WE+ +D+ +L+ A
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNA 531
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 10/144 (6%)
Query: 220 TGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNGI--GAAA 277
T +A + P++ T G+ + +G+ K+V+ YG WT V N I A
Sbjct: 382 TALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTA 441
Query: 278 TGPALH--DDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYC---SIGKIWFGFDDVEAV 332
TGP ++G+V Y+++ + + Q Y++T Y S G + FDD +V
Sbjct: 442 TGPVKGTWENGIVDYRQIASQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSV 498
Query: 333 RVKVAYAKEKKLRGYYVWEVSSDH 356
+ K Y +K+L G + WE+ +D+
Sbjct: 499 QAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 113/290 (38%), Gaps = 52/290 (17%)
Query: 116 RKYFIDSSIKIARLYGF-QGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQ 174
R F+ S K + + F G+D+ W + G + A +AL +
Sbjct: 269 RDTFVASVKKFLKTWKFYDGVDIDWEFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDE 328
Query: 175 LILTAKVAYSPLSTAAAYPVDSIR--------QYLNWVHVITTEYSSPTWQNFTGAHAAL 226
L Y L++A D I QY++++ +T ++ W N G AL
Sbjct: 329 LEAETGRTYE-LTSAIGVGYDKIEDVDYADAVQYMDYIFAMTYDFYG-GWNNVPGHQTAL 386
Query: 227 Y----------DPNSVSNT-----------EYGITEWIEEGLSADKLVLCLPFYGYAW-- 263
Y D V + GI + +G+ A+KLVL YG W
Sbjct: 387 YCGSFMRPGQCDGGGVDENGEPYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEG 446
Query: 264 ----TLVKPEDNGIGAA------ATGPALHDDGLVTYKEVKNHI---KNYGPN-VQVMYN 309
TL P D G A +T + +DG++ YK +K+ + N G N + Y+
Sbjct: 447 VTPDTLTDPNDPMTGTATGKLKGSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYD 506
Query: 310 STYVVNYC---SIGKIWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDH 356
+ + S G++ FDD +V K YAK L G + WE+ +D+
Sbjct: 507 AQAEAPWVWNRSTGEL-ITFDDHRSVLAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 113/290 (38%), Gaps = 52/290 (17%)
Query: 116 RKYFIDSSIKIARLYGF-QGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQ 174
R F+ S K + + F G+D+ W + G + A +AL +
Sbjct: 269 RDTFVASVKKFLKTWKFYDGVDIDWEFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDE 328
Query: 175 LILTAKVAYSPLSTAAAYPVDSIR--------QYLNWVHVITTEYSSPTWQNFTGAHAAL 226
L Y L++A D I QY++++ +T ++ W N G AL
Sbjct: 329 LEAETGRTYE-LTSAIGVGYDKIEDVDYADAVQYMDYIFAMTYDFYG-GWNNVPGHQTAL 386
Query: 227 Y----------DPNSVSNT-----------EYGITEWIEEGLSADKLVLCLPFYGYAW-- 263
Y D V + GI + +G+ A+KLVL YG W
Sbjct: 387 YCGSFMRPGQCDGGGVDENGEPYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEG 446
Query: 264 ----TLVKPEDNGIGAA------ATGPALHDDGLVTYKEVKNHI---KNYGPN-VQVMYN 309
TL P D G A +T + +DG++ YK +K+ + N G N + Y+
Sbjct: 447 VTPDTLTDPNDPMTGTATGKLKGSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYD 506
Query: 310 STYVVNYC---SIGKIWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDH 356
+ + S G++ FDD +V K YAK L G + WE+ +D+
Sbjct: 507 AQAEAPWVWNRSTGEL-ITFDDHRSVLAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 113/290 (38%), Gaps = 52/290 (17%)
Query: 116 RKYFIDSSIKIARLYGF-QGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQ 174
R F+ S K + + F G+D+ W + G + A +AL +
Sbjct: 269 RDTFVASVKKFLKTWKFYDGVDIDWMFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDE 328
Query: 175 LILTAKVAYSPLSTAAAYPVDSIR--------QYLNWVHVITTEYSSPTWQNFTGAHAAL 226
L Y L++A D I QY++++ +T ++ W N G AL
Sbjct: 329 LEAETGRTYE-LTSAIGVGYDKIEDVDYADAVQYMDYIFAMTYDFYG-GWNNVPGHQTAL 386
Query: 227 Y----------DPNSVSNT-----------EYGITEWIEEGLSADKLVLCLPFYGYAW-- 263
Y D V + GI + +G+ A+KLVL YG W
Sbjct: 387 YCGSFMRPGQCDGGGVDENGEPYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEG 446
Query: 264 ----TLVKPEDNGIGAA------ATGPALHDDGLVTYKEVKNHI---KNYGPN-VQVMYN 309
TL P D G A +T + +DG++ YK +K+ + N G N + Y+
Sbjct: 447 VTPDTLTDPNDPMTGTATGKLKGSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYD 506
Query: 310 STYVVNYC---SIGKIWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDH 356
+ + S G++ FDD +V K YAK L G + WE+ +D+
Sbjct: 507 AQAEAPWVWNRSTGEL-ITFDDHRSVLAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 80/350 (22%), Positives = 132/350 (37%), Gaps = 64/350 (18%)
Query: 63 YELSLSPSDEKQFSNFTDTVKIKNPSITTLLXXXXXXXXXXXXXXXMAGNPSFRKYFIDS 122
+E+ LSP + ++ +NP + LL A R FI S
Sbjct: 83 HEIWLSPKVQADLQKLP-ALRKQNPDLKVLLSVGGWGARGFSGAAATA---ESRAVFIRS 138
Query: 123 SIKIARLYGFQGLDLSWN---------QANTSRDKYNIGILFKEWRAAVALEARNNSSQS 173
+ KI + YG G+DL W A+ D+ N L K R AV
Sbjct: 139 AQKIIQQYGLDGIDLDWEFPVNGAWGLVASQPADRDNFTALLKSLREAVG---------E 189
Query: 174 QLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYD----P 229
Q ++T V + S + V ++ LN++++ T + + T Q F ++ LYD P
Sbjct: 190 QKLVTIAVGANAESPKSWVDVKAVAPVLNYINLXTYDXAYGT-QYF---NSNLYDSSHWP 245
Query: 230 NSVSNTEYG----ITEWIEEGLSADKLVLCLPFYGYA----------WTLVKPEDNGIGA 275
+ +Y + ++ GL + L + FYG WT ++N +
Sbjct: 246 TVAAADKYSADFVVNNYLAAGLKPSQXNLGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQ 305
Query: 276 AATGPA-----------LHDDGLVTYKEVKNHIKNYGPNVQVM--YNSTYVVNYCSI--- 319
GP L D V Y ++ + N P + ++ V + S+
Sbjct: 306 PYFGPQQIALFASLGYDLSKDTYVKYNDIVGKLLN-DPQKRFTEHWDDEAKVPWLSVQSA 364
Query: 320 -GKIWFG--FDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHYWMLSQAAAE 366
GK F +++ +V +K Y K K L G WE +D L++ AE
Sbjct: 365 EGKPLFALSYENPRSVAIKADYIKAKGLAGAXFWEYGADDQNQLARQLAE 414
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B
From Arthrobacter Tad20
Length = 435
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 104/258 (40%), Gaps = 34/258 (13%)
Query: 132 FQGLDLSW-----------NQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAK 180
F G+D+ W N +T D+ N L E+R L+A +++ + +L+A
Sbjct: 175 FDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQ--LDAYGSTNNKKYVLSAF 232
Query: 181 VAYSPLSTAAAYPVDSIR-QYLNWVHVITTEYSSPTWQNFTGAHAALYD-------PNSV 232
+ +P A D + L++ + + TG A LYD P+
Sbjct: 233 LPANPADIDAGGWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPADPRAPSKK 292
Query: 233 SNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNGIGAAATGPALHDDGLVTYK- 291
+ + + +++ G+ +L L L YG WT K + GPA D TY+
Sbjct: 293 FSADKAVKKYLAAGIDPKQLGLGLAAYGRGWTGAK------NVSPWGPAT-DGAPGTYET 345
Query: 292 --EVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVAYAKEKKLRGYYV 349
E + +K G + Y++ + G W+ +D++ + K Y K L G
Sbjct: 346 ANEDYDKLKTLGTD---HYDAATGSAWRYDGTQWWSYDNIATTKQKTDYIVSKGLGGGMW 402
Query: 350 WEVSSDHYWMLSQAAAEE 367
WE+S D L A +++
Sbjct: 403 WELSGDRNGELVGAMSDK 420
>pdb|4DWS|D Chain D, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 115/287 (40%), Gaps = 35/287 (12%)
Query: 109 MAGNPSFRKYFIDSSIKI-ARLYGFQGLDLSW-------NQANTSRDK--YNIGILFKEW 158
+A NP R+ F+ S + R F +D+ W ++ N S DK N +L KE
Sbjct: 230 LAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNISSDKDGENYVLLIKEL 289
Query: 159 RAAVALEAR-NNSSQSQLILTAKVAYSPLSTAAAYPVDS-IRQYLNWVHVITTEYSSPTW 216
R+A L++R S++ ++ + + L + +D + L+ +++++ ++ W
Sbjct: 290 RSA--LDSRFGYSNRXEISIACSGVXAXLKKSN---IDQLVANGLDNIYLMSYDFFGTIW 344
Query: 217 QNFTGAHAALYDPNSVSNTEY------GITEWIEEGLSADKLVLCLPFYGYAWTLVKPED 270
++ G H LY P E +++ L + L + Y + V +
Sbjct: 345 ADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEXIHLGYANYGRSAVGGDL 404
Query: 271 NGIGAAATGPALH--DDGLVTYKE-VKN-----HIKNYGPNVQVMYNSTYVVN---YCSI 319
GPAL ++G + + VKN H + G N V+ T +
Sbjct: 405 TTRQYTXNGPALGTMENGAPEFFDIVKNYMDAEHSLSMGKNGFVLMTDTNADADFLFSEA 464
Query: 320 GKIWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHYWMLSQAAAE 366
+ D V+ K YA + KL G + W D +L+ AA E
Sbjct: 465 KGHFISLDTPRTVKQKGEYAAKNKLGGVFSWSGDQD-CGLLANAARE 510
>pdb|4DWS|C Chain C, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/287 (20%), Positives = 110/287 (38%), Gaps = 35/287 (12%)
Query: 109 MAGNPSFRKYFIDSSIKI-ARLYGFQGLDLSWNQANTSRDKYNIG---------ILFKEW 158
+A NP R+ F+ S + R F +D+ W D+ NI +L KE
Sbjct: 230 LAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNISSDXDGENYVLLIKEL 289
Query: 159 RAAVALEAR-NNSSQSQLILTAKVAYSPLSTAAAYPVDS-IRQYLNWVHVITTEYSSPTW 216
R+A L++R S++ ++ + + L + +D + L+ +++++ ++ W
Sbjct: 290 RSA--LDSRFGYSNRXEISIACSGVXAXLKKSN---IDQLVANGLDNIYLMSYDFFGTIW 344
Query: 217 QNFTGAHAALYDPNSVSNTEY------GITEWIEEGLSADKLVLCLPFYGYAWTLVKPED 270
++ G H LY P E +++ L + L + Y + V +
Sbjct: 345 ADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEXIHLGYANYGRSAVGGDL 404
Query: 271 NGIGAAATGPALH--DDGLVTYKEV------KNHIKNYGPNVQVMYNSTYVVN---YCSI 319
GPAL ++G + ++ H + G N V+ T +
Sbjct: 405 TTRQYTXNGPALGTMENGAPEFFDIVXNYMDAEHSLSMGKNGFVLMTDTNADADFLFSEA 464
Query: 320 GKIWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHYWMLSQAAAE 366
+ D V+ K YA + KL G + W D +L+ AA E
Sbjct: 465 XGHFISLDTPRTVKQKGEYAAKNKLGGVFSWSGDQD-CGLLANAARE 510
>pdb|4DWS|A Chain A, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 113/288 (39%), Gaps = 37/288 (12%)
Query: 109 MAGNPSFRKYFIDSSIKI-ARLYGFQGLDLSWNQANTSRDKYNIG---------ILFKEW 158
+A NP R+ F+ S + R F +D+ W D+ NI +L KE
Sbjct: 230 LAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNISSDXDGENYVLLIKEL 289
Query: 159 RAAVALEAR-NNSSQSQLILTAKVAYSPLSTAAAYPVDS-IRQYLNWVHVITTEYSSPTW 216
R+A L++R S++ ++ + + L + +D + L+ +++++ ++ W
Sbjct: 290 RSA--LDSRFGYSNRXEISIACSGVXAXLKXSN---IDQLVANGLDNIYLMSYDFFGTIW 344
Query: 217 QNFTGAHAALYDPNSVSNTEY------GITEWI--EEGLSADKLVLCLPFYGYA-----W 263
++ G H LY P E +++ E G+ +K+ L YG +
Sbjct: 345 ADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEKIHLGYANYGRSAVGGDL 404
Query: 264 TLVKPEDNG--IGAAATGPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVN---YCS 318
T + NG +G G D + Y + + H + G N V+ T +
Sbjct: 405 TTRQYTXNGPALGTMENGAPEFFDIVXNYMDAE-HSLSMGKNGFVLMTDTNADADFLFSE 463
Query: 319 IGKIWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHYWMLSQAAAE 366
+ D V K YA + KL G + W D +L+ AA E
Sbjct: 464 AXGHFISLDTPRTVXQKGEYAAKNKLGGVFSWSGDQD-CGLLANAARE 510
>pdb|4DWS|B Chain B, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 111/287 (38%), Gaps = 35/287 (12%)
Query: 109 MAGNPSFRKYFIDSSIKI-ARLYGFQGLDLSWNQANTSRDKYNIG---------ILFKEW 158
+A NP R+ F+ S + R F +D+ W D+ NI +L E
Sbjct: 230 LAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNISSDXDGENYVLLIXEL 289
Query: 159 RAAVALEAR-NNSSQSQLILTAKVAYSPLSTAAAYPVDS-IRQYLNWVHVITTEYSSPTW 216
R+A L++R S++ ++ + + L + +D + L+ +++++ ++ W
Sbjct: 290 RSA--LDSRFGYSNRXEISIACSGVXAXLKXSN---IDQLVANGLDNIYLMSYDFFGTIW 344
Query: 217 QNFTGAHAALYDPNSVSNTEY------GITEWIEEGLSADKLVLCLPFYGYAWTLVKPED 270
++ G H LY P E +++ L + L + Y + V +
Sbjct: 345 ADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEXIHLGYANYGRSAVGGDL 404
Query: 271 NGIGAAATGPALH--DDGLVTYKE-VKN-----HIKNYGPNVQVMYNSTYVVN---YCSI 319
GPAL ++G + + VKN H + G N V+ T +
Sbjct: 405 TTRQYTXNGPALGTMENGAPEFFDIVKNYMDAEHSLSMGKNGFVLMTDTNADADFLFSEA 464
Query: 320 GKIWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHYWMLSQAAAE 366
+ D V+ K YA + KL G + W D +L+ AA E
Sbjct: 465 KGHFISLDTPRTVKQKGEYAAKNKLGGVFSWSGDQD-CGLLANAARE 510
>pdb|4A5Q|A Chain A, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|B Chain B, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|C Chain C, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|D Chain D, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|E Chain E, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
Length = 546
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 316 YCSIGKIWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHYWMLSQAAAEEDKRNRQNK 375
Y K++ D +VR K Y K+K L G ++W D+ +L+ AA E KR +NK
Sbjct: 456 YSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN-GILTNAAHEGLKRRIKNK 514
>pdb|3OA5|A Chain A, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
pdb|3OA5|B Chain B, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
Length = 574
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 316 YCSIGKIWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHYWMLSQAAAEEDKRNRQNK 375
Y K++ D +VR K Y K+K L G ++W D+ +L+ AA E KR +NK
Sbjct: 484 YSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN-GILTNAAHEGLKRRIKNK 542
>pdb|3CO4|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
pdb|3FND|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
Length = 312
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 64/325 (19%), Positives = 119/325 (36%), Gaps = 56/325 (17%)
Query: 32 WDSDDGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITT 91
W+ + FP + TH+ FA V + L+++P K+ + +T N I
Sbjct: 15 WEFESLFPT--IEWKYLTHINASFARVKADG-TLNINPV-RKRIESVRETAHKHNVKILI 70
Query: 92 LLXXXXXXXXXXXXXXXMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNI 151
L +P RK I I + Y G D+ + + + +
Sbjct: 71 SLAKNSPGEFTT-----AINDPKARKELIQQIIAFTKEYKLDGFDIDYEEYDNWDKNFPS 125
Query: 152 GILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEY 211
++F R + +N + T V L+ + QY +++++ + Y
Sbjct: 126 LLVFA--RGLYLAKEKN------XLXTCAVNSRWLNYGTEW-----EQYFDYINLXS--Y 170
Query: 212 SSPTWQNFTGAHAALYDPNSVSNTEYGITEWIEE-GLSADKLVLCLPFYGYAWTLVKPED 270
+ + HA+ YD + V + +Y W E+ S K+V LPFYGY+W
Sbjct: 171 DRGAFTDKPVQHAS-YD-DFVKDLKY----WNEQCRASKSKIVGGLPFYGYSWE------ 218
Query: 271 NGIGAAATGPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFDDVE 330
+ A+ D + Y + H+ N + +IGK + ++
Sbjct: 219 -----ESLQGAVDDVRGIRYSGILKHLGNEAADKD------------NIGKTY--YNGRP 259
Query: 331 AVRVKVAYAKEKKLRGYYVWEVSSD 355
+ K + KE G +W++ D
Sbjct: 260 TIANKCKFIKENDYAGVXIWQLFQD 284
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,247,097
Number of Sequences: 62578
Number of extensions: 503187
Number of successful extensions: 1189
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1031
Number of HSP's gapped (non-prelim): 70
length of query: 409
length of database: 14,973,337
effective HSP length: 101
effective length of query: 308
effective length of database: 8,652,959
effective search space: 2665111372
effective search space used: 2665111372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)