Query 043488
Match_columns 409
No_of_seqs 224 out of 1527
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:34:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043488.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043488hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02879 GH18_plant_chitinase_c 100.0 7.2E-68 1.6E-72 506.6 31.9 291 26-360 3-298 (299)
2 cd02872 GH18_chitolectin_chito 100.0 1E-65 2.3E-70 506.5 35.4 320 28-359 1-345 (362)
3 cd02873 GH18_IDGF The IDGF's ( 100.0 6.8E-64 1.5E-68 498.1 35.4 323 27-359 1-396 (413)
4 KOG2806 Chitinase [Carbohydrat 100.0 2.9E-63 6.4E-68 494.8 33.3 336 22-363 54-406 (432)
5 smart00636 Glyco_18 Glycosyl h 100.0 2.4E-62 5.2E-67 477.8 32.4 316 27-355 1-334 (334)
6 COG3325 ChiA Chitinase [Carboh 100.0 1.5E-62 3.2E-67 466.0 26.9 340 22-370 34-438 (441)
7 cd02878 GH18_zymocin_alpha Zym 100.0 7.9E-62 1.7E-66 473.8 30.8 308 27-355 1-345 (345)
8 cd06548 GH18_chitinase The GH1 100.0 1.8E-61 3.9E-66 468.2 30.6 283 28-355 1-322 (322)
9 PF00704 Glyco_hydro_18: Glyco 100.0 3.8E-56 8.3E-61 435.6 31.1 320 26-355 1-343 (343)
10 cd02876 GH18_SI-CLP Stabilin-1 100.0 1.3E-55 2.7E-60 426.8 25.6 290 27-356 4-311 (318)
11 cd02875 GH18_chitobiase Chitob 100.0 1.3E-53 2.8E-58 416.9 31.1 298 24-364 34-348 (358)
12 cd02874 GH18_CFLE_spore_hydrol 100.0 2.2E-51 4.7E-56 396.8 25.9 291 27-357 3-307 (313)
13 cd06545 GH18_3CO4_chitinase Th 100.0 4.2E-48 9.1E-53 362.4 26.3 247 28-363 1-252 (253)
14 cd06549 GH18_trifunctional GH1 100.0 2.2E-47 4.7E-52 365.3 24.4 289 27-358 1-296 (298)
15 cd00598 GH18_chitinase-like Th 100.0 6.7E-37 1.5E-41 279.0 21.9 172 28-210 1-177 (210)
16 COG3858 Predicted glycosyl hyd 100.0 8.5E-35 1.8E-39 276.1 18.0 240 88-358 160-413 (423)
17 cd06544 GH18_narbonin Narbonin 100.0 1.6E-33 3.4E-38 261.3 21.4 203 36-263 11-221 (253)
18 cd06546 GH18_CTS3_chitinase GH 100.0 7.3E-33 1.6E-37 258.4 25.0 198 27-258 1-217 (256)
19 cd02871 GH18_chitinase_D-like 100.0 8.1E-31 1.8E-35 252.4 25.1 211 26-259 1-248 (312)
20 KOG2091 Predicted member of gl 100.0 3E-28 6.4E-33 221.4 16.9 293 25-355 78-384 (392)
21 cd06542 GH18_EndoS-like Endo-b 99.9 5.7E-25 1.2E-29 206.4 18.2 196 26-261 1-208 (255)
22 cd02877 GH18_hevamine_XipI_cla 99.9 4.4E-24 9.4E-29 200.9 21.6 240 27-357 2-270 (280)
23 cd06543 GH18_PF-ChiA-like PF-C 99.9 3.7E-21 8.1E-26 182.3 17.1 151 44-214 22-184 (294)
24 COG3469 Chitinase [Carbohydrat 99.7 1.4E-16 3.1E-21 141.5 18.6 179 21-214 21-215 (332)
25 KOG4701 Chitinase [Cell wall/m 99.6 3.6E-14 7.9E-19 132.8 17.4 227 1-260 1-258 (568)
26 cd06547 GH85_ENGase Endo-beta- 98.4 3.2E-06 6.9E-11 82.1 12.3 157 78-264 51-216 (339)
27 PF02638 DUF187: Glycosyl hydr 98.0 5.5E-05 1.2E-09 72.9 12.2 130 111-261 134-299 (311)
28 PF03644 Glyco_hydro_85: Glyco 97.9 6.5E-05 1.4E-09 72.2 9.4 156 77-262 46-209 (311)
29 PF13200 DUF4015: Putative gly 97.8 0.0099 2.1E-07 57.1 22.3 103 113-226 120-241 (316)
30 PF11340 DUF3142: Protein of u 97.5 0.0011 2.4E-08 57.7 10.6 85 112-209 22-107 (181)
31 KOG2331 Predicted glycosylhydr 95.4 0.21 4.6E-06 48.9 11.5 83 80-165 118-201 (526)
32 COG3867 Arabinogalactan endo-1 94.6 3.8 8.2E-05 38.7 16.8 68 71-143 102-178 (403)
33 PF14883 GHL13: Hypothetical g 94.0 3.1 6.7E-05 39.2 15.1 193 46-259 29-263 (294)
34 PF14871 GHL6: Hypothetical gl 88.0 2.9 6.3E-05 34.9 7.7 65 72-139 43-132 (132)
35 cd02810 DHOD_DHPD_FMN Dihydroo 87.0 5.7 0.00012 37.7 10.2 59 87-162 97-161 (289)
36 TIGR01370 cysRS possible cyste 86.8 4.3 9.2E-05 39.2 9.0 86 112-208 142-236 (315)
37 COG1649 Uncharacterized protei 86.7 1.6 3.5E-05 43.5 6.3 90 113-209 181-307 (418)
38 TIGR02103 pullul_strch alpha-1 86.6 6.5 0.00014 43.4 11.3 84 74-166 405-517 (898)
39 cd02930 DCR_FMN 2,4-dienoyl-Co 85.7 12 0.00025 36.9 11.8 87 48-139 47-158 (353)
40 TIGR02104 pulA_typeI pullulana 85.5 8.8 0.00019 40.7 11.6 85 73-166 229-340 (605)
41 TIGR02402 trehalose_TreZ malto 85.3 7 0.00015 40.9 10.5 92 71-167 158-270 (542)
42 PRK12313 glycogen branching en 84.2 10 0.00022 40.5 11.4 94 71-167 218-354 (633)
43 PRK12568 glycogen branching en 83.8 12 0.00026 40.4 11.6 95 71-167 317-454 (730)
44 COG1306 Uncharacterized conser 83.5 4.6 0.0001 38.1 7.2 83 119-212 197-299 (400)
45 PRK05402 glycogen branching en 82.0 16 0.00034 39.8 11.9 95 71-167 313-450 (726)
46 cd04734 OYE_like_3_FMN Old yel 81.7 46 0.00099 32.6 14.1 88 48-139 47-162 (343)
47 PRK14706 glycogen branching en 81.5 18 0.00039 38.6 11.8 95 71-167 215-350 (639)
48 PLN02960 alpha-amylase 81.3 18 0.0004 39.6 11.8 94 71-167 464-603 (897)
49 PRK14581 hmsF outer membrane N 81.0 37 0.00081 36.3 13.8 195 46-258 346-610 (672)
50 TIGR01515 branching_enzym alph 79.3 24 0.00051 37.6 11.9 95 71-167 204-341 (613)
51 PRK14705 glycogen branching en 78.7 28 0.0006 40.0 12.6 94 71-166 813-949 (1224)
52 PF07172 GRP: Glycine rich pro 76.6 1.1 2.3E-05 35.2 0.7 14 1-14 1-14 (95)
53 PRK10785 maltodextrin glucosid 76.1 26 0.00056 37.2 11.1 57 111-167 303-365 (598)
54 PF13199 Glyco_hydro_66: Glyco 75.5 6 0.00013 41.3 6.0 54 111-164 238-301 (559)
55 PRK14582 pgaB outer membrane N 74.6 14 0.00031 39.4 8.6 131 112-258 439-610 (671)
56 PF15102 TMEM154: TMEM154 prot 73.3 2.6 5.7E-05 35.5 2.2 31 377-408 58-89 (146)
57 PHA02819 hypothetical protein; 72.7 5.1 0.00011 29.1 3.3 17 354-370 17-33 (71)
58 PF14885 GHL15: Hypothetical g 72.6 6.9 0.00015 29.5 4.1 37 103-139 38-75 (79)
59 TIGR02102 pullulan_Gpos pullul 72.1 36 0.00077 38.7 11.3 84 73-165 555-662 (1111)
60 PLN02877 alpha-amylase/limit d 72.0 29 0.00062 38.7 10.3 31 113-143 534-564 (970)
61 PF02057 Glyco_hydro_59: Glyco 71.7 8.6 0.00019 40.7 6.0 82 77-166 116-201 (669)
62 PHA02650 hypothetical protein; 71.5 5.8 0.00013 29.4 3.4 16 355-370 18-33 (81)
63 cd02801 DUS_like_FMN Dihydrour 71.3 18 0.00039 32.8 7.6 44 83-143 49-92 (231)
64 PF15012 DUF4519: Domain of un 71.1 1.5 3.4E-05 30.3 0.3 25 374-399 27-51 (56)
65 cd02803 OYE_like_FMN_family Ol 71.1 9.5 0.0002 36.9 6.0 46 48-95 47-97 (327)
66 PHA02975 hypothetical protein; 69.8 7 0.00015 28.2 3.4 17 355-371 18-34 (69)
67 cd04733 OYE_like_2_FMN Old yel 69.7 20 0.00044 34.9 8.0 25 116-141 148-172 (338)
68 PLN02495 oxidoreductase, actin 69.7 32 0.00069 34.3 9.3 56 73-144 98-153 (385)
69 cd02931 ER_like_FMN Enoate red 69.0 26 0.00056 34.9 8.6 63 72-139 82-171 (382)
70 cd02932 OYE_YqiM_FMN Old yello 67.8 14 0.0003 36.0 6.3 47 47-95 46-97 (336)
71 COG1891 Uncharacterized protei 67.7 34 0.00073 29.9 7.7 184 112-360 6-197 (235)
72 PLN02447 1,4-alpha-glucan-bran 67.0 67 0.0015 35.0 11.6 66 71-138 298-390 (758)
73 PF00724 Oxidored_FMN: NADH:fl 66.7 1E+02 0.0022 30.1 12.2 47 47-95 49-100 (341)
74 PRK07259 dihydroorotate dehydr 64.5 46 0.00099 31.8 9.2 58 88-162 91-156 (301)
75 cd04747 OYE_like_5_FMN Old yel 64.2 66 0.0014 31.7 10.3 25 116-141 143-167 (361)
76 PRK03705 glycogen debranching 63.6 32 0.0007 36.8 8.5 66 73-140 242-338 (658)
77 PF14587 Glyco_hydr_30_2: O-Gl 63.5 79 0.0017 31.4 10.5 90 75-167 106-218 (384)
78 PF07745 Glyco_hydro_53: Glyco 62.5 86 0.0019 30.6 10.5 91 71-166 56-167 (332)
79 cd04735 OYE_like_4_FMN Old yel 61.3 57 0.0012 32.0 9.3 68 69-140 74-166 (353)
80 PRK10550 tRNA-dihydrouridine s 60.8 37 0.0008 32.8 7.7 94 88-207 62-168 (312)
81 cd02940 DHPD_FMN Dihydropyrimi 60.7 97 0.0021 29.6 10.6 68 79-162 90-167 (299)
82 cd04740 DHOD_1B_like Dihydroor 60.7 64 0.0014 30.6 9.4 41 87-144 88-128 (296)
83 TIGR02100 glgX_debranch glycog 60.2 40 0.00086 36.4 8.5 50 111-160 314-365 (688)
84 PRK08318 dihydropyrimidine deh 59.1 67 0.0015 32.3 9.7 65 81-161 92-166 (420)
85 PHA03054 IMV membrane protein; 59.0 13 0.00028 27.0 3.1 28 343-371 7-34 (72)
86 PLN02411 12-oxophytodienoate r 58.3 28 0.0006 34.8 6.6 23 71-95 85-107 (391)
87 cd06591 GH31_xylosidase_XylS X 57.5 52 0.0011 31.8 8.2 32 111-142 129-160 (319)
88 TIGR00737 nifR3_yhdG putative 57.3 68 0.0015 30.9 9.0 42 85-143 59-100 (319)
89 PRK07565 dihydroorotate dehydr 56.3 64 0.0014 31.4 8.7 73 72-162 86-164 (334)
90 cd02929 TMADH_HD_FMN Trimethyl 55.9 47 0.001 32.9 7.7 91 48-141 52-173 (370)
91 PF02065 Melibiase: Melibiase; 55.1 1E+02 0.0022 30.8 9.9 116 71-204 102-251 (394)
92 cd06592 GH31_glucosidase_KIAA1 54.2 52 0.0011 31.5 7.5 33 110-142 134-166 (303)
93 cd04738 DHOD_2_like Dihydrooro 54.0 1.6E+02 0.0034 28.6 11.0 74 79-163 118-197 (327)
94 PRK02506 dihydroorotate dehydr 53.8 97 0.0021 29.8 9.3 73 73-162 77-156 (310)
95 PF05393 Hum_adeno_E3A: Human 53.6 15 0.00032 28.0 2.8 24 384-407 36-60 (94)
96 PF07476 MAAL_C: Methylasparta 53.2 76 0.0016 29.0 7.7 101 112-247 87-190 (248)
97 PF14307 Glyco_tran_WbsX: Glyc 52.6 33 0.00072 33.6 6.0 47 327-373 55-101 (345)
98 PHA02844 putative transmembran 51.6 20 0.00042 26.4 3.1 18 354-371 17-34 (75)
99 COG1908 FrhD Coenzyme F420-red 50.9 42 0.00091 27.4 5.1 74 88-167 53-126 (132)
100 COG1902 NemA NADH:flavin oxido 50.5 47 0.001 32.8 6.6 23 72-96 82-104 (363)
101 smart00812 Alpha_L_fucos Alpha 49.2 86 0.0019 31.3 8.3 86 71-160 126-221 (384)
102 PF10731 Anophelin: Thrombin i 49.1 11 0.00023 26.5 1.4 18 1-18 1-18 (65)
103 PF01120 Alpha_L_fucos: Alpha- 47.9 1.6E+02 0.0035 28.8 10.0 85 71-161 136-235 (346)
104 PRK05286 dihydroorotate dehydr 47.6 1.5E+02 0.0033 28.9 9.8 75 78-163 127-206 (344)
105 PHA02692 hypothetical protein; 47.3 32 0.00069 25.1 3.6 28 344-372 8-35 (70)
106 KOG1552 Predicted alpha/beta h 46.8 30 0.00065 32.2 4.3 51 203-262 88-138 (258)
107 PRK10605 N-ethylmaleimide redu 46.5 1.4E+02 0.003 29.4 9.3 46 48-95 49-99 (362)
108 cd04741 DHOD_1A_like Dihydroor 46.4 1.6E+02 0.0034 28.1 9.5 59 87-162 90-156 (294)
109 cd06589 GH31 The enzymes of gl 45.8 2.5E+02 0.0055 26.1 11.4 52 74-143 67-118 (265)
110 PF14610 DUF4448: Protein of u 44.4 19 0.00041 31.9 2.6 29 375-405 156-184 (189)
111 PRK03995 hypothetical protein; 43.3 57 0.0012 30.7 5.7 69 87-158 179-260 (267)
112 PF08869 XisI: XisI protein; 43.3 13 0.00028 29.9 1.2 18 239-256 80-97 (111)
113 PRK11815 tRNA-dihydrouridine s 43.3 69 0.0015 31.2 6.5 41 86-143 62-102 (333)
114 TIGR00742 yjbN tRNA dihydrouri 43.1 77 0.0017 30.7 6.8 60 86-162 52-122 (318)
115 PF02055 Glyco_hydro_30: O-Gly 43.0 94 0.002 32.1 7.7 90 75-165 155-268 (496)
116 PF00834 Ribul_P_3_epim: Ribul 42.9 86 0.0019 28.1 6.6 76 106-210 62-137 (201)
117 COG0296 GlgB 1,4-alpha-glucan 42.7 79 0.0017 33.6 7.1 67 71-139 212-304 (628)
118 cd02933 OYE_like_FMN Old yello 42.6 41 0.00089 32.8 4.9 25 116-141 151-175 (338)
119 COG4724 Endo-beta-N-acetylgluc 40.8 52 0.0011 32.5 5.0 71 87-161 139-218 (553)
120 PF08693 SKG6: Transmembrane a 40.2 23 0.00049 22.9 1.7 19 376-394 12-30 (40)
121 TIGR01093 aroD 3-dehydroquinat 39.9 2.9E+02 0.0063 25.1 12.4 57 78-142 47-103 (228)
122 KOG2678 Predicted membrane pro 38.8 24 0.00051 31.9 2.2 32 375-407 213-244 (244)
123 PLN03244 alpha-amylase; Provis 38.8 97 0.0021 33.9 7.1 66 71-138 439-531 (872)
124 PF02439 Adeno_E3_CR2: Adenovi 38.4 42 0.00091 21.4 2.7 28 380-407 7-34 (38)
125 TIGR01036 pyrD_sub2 dihydrooro 38.3 2.7E+02 0.0058 27.1 9.8 78 75-163 121-203 (335)
126 PRK13523 NADPH dehydrogenase N 37.8 3.9E+02 0.0085 26.0 14.1 89 47-140 50-164 (337)
127 COG0429 Predicted hydrolase of 37.3 1.4E+02 0.003 29.1 7.3 48 117-164 90-147 (345)
128 PRK08255 salicylyl-CoA 5-hydro 36.7 1.4E+02 0.0031 32.7 8.4 24 116-140 550-573 (765)
129 PF11857 DUF3377: Domain of un 36.6 34 0.00075 25.3 2.4 24 376-399 30-53 (74)
130 PRK01060 endonuclease IV; Prov 36.0 67 0.0014 30.0 5.1 47 120-166 14-60 (281)
131 PF10566 Glyco_hydro_97: Glyco 35.5 1.9E+02 0.004 27.4 7.8 77 72-164 72-148 (273)
132 PHA03099 epidermal growth fact 35.1 28 0.00061 28.6 1.9 19 390-408 113-131 (139)
133 COG2342 Predicted extracellula 34.8 1.5E+02 0.0033 28.0 6.9 50 118-167 126-185 (300)
134 PF07364 DUF1485: Protein of u 34.8 3.7E+02 0.008 25.7 9.9 107 74-205 46-156 (292)
135 PRK14866 hypothetical protein; 34.7 95 0.0021 31.6 6.0 68 87-158 183-263 (451)
136 cd06599 GH31_glycosidase_Aec37 34.5 1.1E+02 0.0025 29.4 6.5 32 111-142 138-169 (317)
137 PF08194 DIM: DIM protein; In 34.3 59 0.0013 20.5 2.8 15 1-15 1-15 (36)
138 PF04468 PSP1: PSP1 C-terminal 33.6 77 0.0017 24.3 4.2 52 113-164 21-81 (88)
139 cd04739 DHOD_like Dihydroorota 32.9 3.1E+02 0.0066 26.5 9.2 38 88-142 99-136 (325)
140 PF07582 AP_endonuc_2_N: AP en 32.7 86 0.0019 21.8 3.8 41 121-162 3-44 (55)
141 PF04914 DltD_C: DltD C-termin 32.5 1.4E+02 0.0031 24.7 5.9 61 72-138 35-96 (130)
142 COG5309 Exo-beta-1,3-glucanase 32.4 1.7E+02 0.0037 27.6 6.8 58 79-137 221-279 (305)
143 TIGR03852 sucrose_gtfA sucrose 32.0 1.5E+02 0.0032 30.5 7.0 56 110-166 162-224 (470)
144 TIGR01233 lacG 6-phospho-beta- 30.8 1.1E+02 0.0023 31.5 5.9 81 51-139 72-154 (467)
145 PF08885 GSCFA: GSCFA family; 30.7 1.3E+02 0.0028 28.0 5.9 55 74-128 153-208 (251)
146 PF13179 DUF4006: Family of un 30.6 64 0.0014 23.3 2.9 22 382-403 13-34 (66)
147 PF12876 Cellulase-like: Sugar 30.5 84 0.0018 23.8 4.0 73 126-209 1-88 (88)
148 cd06598 GH31_transferase_CtsZ 30.4 1.6E+02 0.0034 28.4 6.7 31 111-142 135-165 (317)
149 PF02101 Ocular_alb: Ocular al 30.2 31 0.00067 34.0 1.7 16 391-406 246-261 (405)
150 smart00633 Glyco_10 Glycosyl h 30.2 4.4E+02 0.0095 24.3 9.7 73 75-159 105-179 (254)
151 cd00019 AP2Ec AP endonuclease 30.0 96 0.0021 29.0 5.1 45 121-165 13-57 (279)
152 PRK14510 putative bifunctional 30.0 3.2E+02 0.0069 31.8 10.0 49 112-165 317-365 (1221)
153 PF07745 Glyco_hydro_53: Glyco 29.9 3.4E+02 0.0074 26.4 8.9 69 79-164 160-230 (332)
154 cd01827 sialate_O-acetylestera 29.7 2.9E+02 0.0062 23.6 7.8 63 72-137 92-154 (188)
155 PRK13840 sucrose phosphorylase 29.6 1.9E+02 0.004 30.0 7.3 56 110-166 166-227 (495)
156 PF12575 DUF3753: Protein of u 29.5 71 0.0015 23.5 3.1 20 354-373 17-36 (72)
157 cd01841 NnaC_like NnaC (CMP-Ne 29.0 3.4E+02 0.0075 22.8 8.1 64 71-138 73-137 (174)
158 PF00128 Alpha-amylase: Alpha 28.8 1.3E+02 0.0027 28.1 5.8 48 111-166 142-189 (316)
159 PF06365 CD34_antigen: CD34/Po 28.6 84 0.0018 28.2 4.1 27 377-404 101-127 (202)
160 TIGR01037 pyrD_sub1_fam dihydr 28.5 4.1E+02 0.0088 25.1 9.2 58 88-162 90-156 (300)
161 PF14488 DUF4434: Domain of un 28.3 3.9E+02 0.0084 23.1 12.1 107 46-165 32-151 (166)
162 PF14606 Lipase_GDSL_3: GDSL-l 28.2 3.2E+02 0.0069 24.0 7.6 64 71-137 76-141 (178)
163 cd06594 GH31_glucosidase_YihQ 27.7 2.1E+02 0.0046 27.5 7.1 64 75-140 73-165 (317)
164 TIGR01839 PHA_synth_II poly(R) 27.6 1.1E+02 0.0024 32.1 5.3 45 121-165 237-281 (560)
165 PF01102 Glycophorin_A: Glycop 27.6 61 0.0013 26.6 2.8 25 381-405 69-93 (122)
166 PRK08005 epimerase; Validated 27.5 1.9E+02 0.0042 26.1 6.3 76 106-210 63-138 (210)
167 PRK02412 aroD 3-dehydroquinate 27.1 5.1E+02 0.011 24.0 11.0 58 75-141 61-119 (253)
168 PF01207 Dus: Dihydrouridine s 26.6 1.1E+02 0.0025 29.3 5.0 63 84-163 49-122 (309)
169 PRK09505 malS alpha-amylase; R 26.5 81 0.0018 34.0 4.3 30 111-140 434-463 (683)
170 PRK13575 3-dehydroquinate dehy 26.4 5.1E+02 0.011 23.8 12.2 61 73-141 47-107 (238)
171 COG1523 PulA Type II secretory 26.4 2.5E+02 0.0055 30.4 7.8 32 111-142 332-363 (697)
172 COG3410 Uncharacterized conser 26.4 1.6E+02 0.0034 25.6 5.0 44 111-157 145-188 (191)
173 PLN02711 Probable galactinol-- 26.0 3.3E+02 0.0071 29.7 8.4 69 73-141 305-408 (777)
174 COG5185 HEC1 Protein involved 26.0 71 0.0015 32.3 3.4 57 107-165 97-153 (622)
175 PF07010 Endomucin: Endomucin; 25.5 56 0.0012 29.7 2.4 11 395-405 208-218 (259)
176 cd06600 GH31_MGAM-like This fa 24.7 2.6E+02 0.0056 26.9 7.1 33 111-143 130-162 (317)
177 KOG0860 Synaptobrevin/VAMP-lik 24.6 63 0.0014 26.2 2.3 22 381-402 95-116 (116)
178 cd06593 GH31_xylosidase_YicI Y 23.9 2.8E+02 0.006 26.4 7.2 31 110-141 129-159 (308)
179 PF05454 DAG1: Dystroglycan (D 23.6 27 0.00058 33.3 0.0 27 380-406 148-174 (290)
180 PLN02982 galactinol-raffinose 23.5 4.2E+02 0.0091 29.1 8.6 69 73-141 390-492 (865)
181 TIGR02631 xylA_Arthro xylose i 23.2 3.5E+02 0.0076 26.9 7.8 60 103-167 21-82 (382)
182 TIGR03234 OH-pyruv-isom hydrox 22.9 1.4E+02 0.003 27.4 4.7 37 120-166 16-52 (254)
183 KOG3111 D-ribulose-5-phosphate 22.8 3.6E+02 0.0077 24.2 6.7 75 107-210 70-144 (224)
184 COG3623 SgaU Putative L-xylulo 22.4 6.3E+02 0.014 23.4 9.0 68 104-182 79-154 (287)
185 PF04414 tRNA_deacylase: D-ami 22.2 1.5E+02 0.0032 26.9 4.5 66 90-158 131-207 (213)
186 PF08113 CoxIIa: Cytochrome c 22.2 1.5E+02 0.0033 18.2 3.0 22 381-402 10-31 (34)
187 PF04688 Phage_holin: Phage ly 21.7 1.3E+02 0.0029 20.1 3.1 20 387-406 14-33 (47)
188 PF05691 Raffinose_syn: Raffin 21.5 4.2E+02 0.0091 28.9 8.3 92 72-163 287-415 (747)
189 PRK09722 allulose-6-phosphate 21.4 2.9E+02 0.0063 25.3 6.3 77 106-210 64-140 (229)
190 TIGR00542 hxl6Piso_put hexulos 21.3 1.4E+02 0.0031 27.8 4.5 46 122-167 20-66 (279)
191 PF05763 DUF835: Protein of un 21.0 2.2E+02 0.0047 23.8 5.0 55 111-165 55-110 (136)
192 TIGR02456 treS_nterm trehalose 21.0 2.2E+02 0.0049 29.7 6.2 54 111-165 171-230 (539)
193 smart00733 Mterf Mitochondrial 20.9 86 0.0019 17.5 1.9 21 323-344 10-30 (31)
194 PF04478 Mid2: Mid2 like cell 20.5 48 0.001 28.3 0.9 27 377-403 50-76 (154)
195 COG2723 BglB Beta-glucosidase/ 20.4 4.9E+02 0.011 26.6 8.1 80 48-131 75-157 (460)
196 PF10840 DUF2645: Protein of u 20.3 1.7E+02 0.0037 23.2 3.9 42 350-393 30-71 (103)
197 KOG3035 Isoamyl acetate-hydrol 20.2 5.6E+02 0.012 23.5 7.5 66 72-137 99-171 (245)
198 KOG1114 Tripeptidyl peptidase 20.1 3E+02 0.0065 30.8 6.8 67 86-166 334-401 (1304)
No 1
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=7.2e-68 Score=506.56 Aligned_cols=291 Identities=50% Similarity=0.914 Sum_probs=265.5
Q ss_pred cEEEEEEeCCC-CCCCcCCCCCCccEEEEEEEEEeCCCeEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCc
Q 043488 26 LIRAGYWDSDD-GFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLSIGGGNNPNYS 104 (409)
Q Consensus 26 ~~v~gY~~~~~-~~~~~~i~~~~~Thii~~f~~i~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGG~~~~~~~ 104 (409)
-+++|||++|. .+.++++|.++||||+|+|+.++++++.+...+.+...+..+.+.+|+++|++|+++|||||+. +++
T Consensus 3 ~~~~~Y~~~w~~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~lkvlisiGG~~~-~s~ 81 (299)
T cd02879 3 IVKGGYWPAWSEEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPSDESEFSTFTETVKRKNPSVKTLLSIGGGGS-DSS 81 (299)
T ss_pred eEEEEEECCCCCCCChhHCCcccCCEEEEEEEEecCCCCEEeeccccHHHHHHHHHHHHHhCCCCeEEEEEeCCCC-CCc
Confidence 47899999966 8999999999999999999999998878887776677788888889999999999999999986 568
Q ss_pred ccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecC
Q 043488 105 SYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYS 184 (409)
Q Consensus 105 ~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~ 184 (409)
.|+.++++++.|++|++++++++++|||||||||||+|..++|+++|+.|+++||++|+++.+ ++++.+++||+++|+.
T Consensus 82 ~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~-~~~~~~~~ls~av~~~ 160 (299)
T cd02879 82 AFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEAR-SSGRPPLLLTAAVYFS 160 (299)
T ss_pred hhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhh-ccCCCcEEEEeecccc
Confidence 999999999999999999999999999999999999998878999999999999999997665 5565679999999876
Q ss_pred ccc----ccCCCChhHHhccccEEEeeccCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHcCCCCCceEEecceee
Q 043488 185 PLS----TAAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYG 260 (409)
Q Consensus 185 ~~~----~~~~y~~~~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~p~~KivlGlp~yG 260 (409)
+.. ....||++++.++|||||||+||+||+|....++|+|||+.+.+.++++.+|++|++.|+|++||+||+||||
T Consensus 161 ~~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~~~~~~~~v~~~~~~g~p~~KlvlGvp~YG 240 (299)
T cd02879 161 PILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSNVSTDYGIKSWIKAGVPAKKLVLGLPLYG 240 (299)
T ss_pred hhhccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCCCCCHHHHHHHHHHcCCCHHHEEEEecccc
Confidence 654 3446899999999999999999999999877789999999887778999999999999999999999999999
Q ss_pred EEeeeccCCCCCCCCCccCCCCCCCCcccHHHHHHhhhcCCCCeEEEEeccceeEEEEeCcEEEEECCHHHHHHHHHHHH
Q 043488 261 YAWTLVKPEDNGIGAAATGPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVAYAK 340 (409)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~ydd~~Sl~~K~~~~~ 340 (409)
|.|++ ||+.++++|.+.+++||+|||++|++.|++||+
T Consensus 241 r~~~~------------------------------------------~D~~~~~~y~~~~~~wi~ydd~~Si~~K~~~a~ 278 (299)
T cd02879 241 RAWTL------------------------------------------YDTTTVSSYVYAGTTWIGYDDVQSIAVKVKYAK 278 (299)
T ss_pred ccccc------------------------------------------cCCCcceEEEEECCEEEEeCCHHHHHHHHHHHH
Confidence 99952 677788999999999999999999999999999
Q ss_pred HcCCceEEEEeccCCCchhH
Q 043488 341 EKKLRGYYVWEVSSDHYWML 360 (409)
Q Consensus 341 ~~glgGi~iW~l~~Dd~~~L 360 (409)
++||||+|+|++++||++.|
T Consensus 279 ~~~lgGv~~W~l~~Dd~~~~ 298 (299)
T cd02879 279 QKGLLGYFAWAVGYDDNNWL 298 (299)
T ss_pred hCCCCeEEEEEeecCCcccc
Confidence 99999999999999998765
No 2
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=1e-65 Score=506.49 Aligned_cols=320 Identities=35% Similarity=0.628 Sum_probs=280.1
Q ss_pred EEEEEeCCC-------CCCCcCCCCCCccEEEEEEEEEeCCCeEEecCCc---chhHHHHHHHHHHhhCCCcEEEEEEcC
Q 043488 28 RAGYWDSDD-------GFPVSDVNSALFTHLMCGFADVNSTSYELSLSPS---DEKQFSNFTDTVKIKNPSITTLLSIGG 97 (409)
Q Consensus 28 v~gY~~~~~-------~~~~~~i~~~~~Thii~~f~~i~~~~~~~~~~~~---~~~~~~~~~~~lk~~~p~~kvllsiGG 97 (409)
++|||++|. .|.++++|.++||||+|+|+.++++|......+. ....+..+. .+|+++|++||++||||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g~~~~~~~~~d~~~~~~~~~~-~lk~~~p~lkvlisiGG 79 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIIILDEWNDIDLGLYERFN-ALKEKNPNLKTLLAIGG 79 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCCCEEecCchhhhhhhHHHHHH-HHHhhCCCceEEEEEcC
Confidence 589999832 5788999999999999999999998643333222 345566665 68999999999999999
Q ss_pred CCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCC----cccHhhHHHHHHHHHHHHHHHhhcCCCCc
Q 043488 98 GNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANT----SRDKYNIGILFKEWRAAVALEARNNSSQS 173 (409)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~----~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~ 173 (409)
|.. +++.|+.++++++.|++|++++++++++|+|||||||||+|.. ++++++|+.||++||++|++.++
T Consensus 80 ~~~-~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~~------ 152 (362)
T cd02872 80 WNF-GSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPEAP------ 152 (362)
T ss_pred CCC-CcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhhCc------
Confidence 986 4668999999999999999999999999999999999999974 47899999999999999998632
Q ss_pred eeEEEEEeecCcccccCCCChhHHhccccEEEeeccCCCCCCCCCCCCCCCcCCCCC------CCCcHHHHHHHHHHcCC
Q 043488 174 QLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYDPN------SVSNTEYGITEWIEEGL 247 (409)
Q Consensus 174 ~~~Ls~a~~~~~~~~~~~y~~~~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~------~~~~~~~~v~~~~~~g~ 247 (409)
+++||+++|+.+......||++++.+++|+|+||+||+|++| ...++++|||+... ...+++.++++|++.|+
T Consensus 153 ~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~-~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~~gv 231 (362)
T cd02872 153 RLLLTAAVSAGKETIDAAYDIPEISKYLDFINVMTYDFHGSW-EGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKGA 231 (362)
T ss_pred CeEEEEEecCChHHHhhcCCHHHHhhhcceEEEecccCCCCC-CCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCC
Confidence 479999999876555556899999999999999999999997 45799999998632 24689999999999999
Q ss_pred CCCceEEecceeeEEeeeccCCCCCCCCCccCCCC-----CCCCcccHHHHHHhhhcCCCCeEEEEeccceeEEEEeCcE
Q 043488 248 SADKLVLCLPFYGYAWTLVKPEDNGIGAAATGPAL-----HDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKI 322 (409)
Q Consensus 248 p~~KivlGlp~yG~~~~~~~~~~~~~~~~~~g~~~-----~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~ 322 (409)
|++||+||+|+||+.|++.++.++++|+|..|++. .+.|.++|.|||+.+ ..+ +...||+.+++||.+.+++
T Consensus 232 p~~KlvlGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~--~~~~~D~~~~~~y~~~~~~ 308 (362)
T cd02872 232 PPEKLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSG--WTVVWDDEQKVPYAYKGNQ 308 (362)
T ss_pred CHHHeEeccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCC--cEEEEeCCcceeEEEECCE
Confidence 99999999999999999998888888988876542 467899999999988 667 9999999999999999999
Q ss_pred EEEECCHHHHHHHHHHHHHcCCceEEEEeccCCCchh
Q 043488 323 WFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHYWM 359 (409)
Q Consensus 323 ~i~ydd~~Sl~~K~~~~~~~glgGi~iW~l~~Dd~~~ 359 (409)
||+|||++|++.|++|++++||||+++|++++||+.+
T Consensus 309 ~v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~DD~~g 345 (362)
T cd02872 309 WVGYDDEESIALKVQYLKSKGLGGAMVWSIDLDDFRG 345 (362)
T ss_pred EEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcCCC
Confidence 9999999999999999999999999999999999754
No 3
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=6.8e-64 Score=498.08 Aligned_cols=323 Identities=27% Similarity=0.495 Sum_probs=264.3
Q ss_pred EEEEEEeCC-------CCCCCcCCCCCC--ccEEEEEEEEEeCCCeEEecCCc----chhHHHHHHHHHHhhCCCcEEEE
Q 043488 27 IRAGYWDSD-------DGFPVSDVNSAL--FTHLMCGFADVNSTSYELSLSPS----DEKQFSNFTDTVKIKNPSITTLL 93 (409)
Q Consensus 27 ~v~gY~~~~-------~~~~~~~i~~~~--~Thii~~f~~i~~~~~~~~~~~~----~~~~~~~~~~~lk~~~p~~kvll 93 (409)
+++|||.++ ..+.+++||..+ ||||+|+|+.++++++.+...+. +...+..+. .+|++||++|+|+
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~lk~~~p~lKvll 79 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAIT-SLKRKYPHLKVLL 79 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHH-HHHhhCCCCeEEE
Confidence 478999883 256789999865 99999999999998877766443 124566665 6999999999999
Q ss_pred EEcCCCCCC----CcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCC-------------------------
Q 043488 94 SIGGGNNPN----YSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANT------------------------- 144 (409)
Q Consensus 94 siGG~~~~~----~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~------------------------- 144 (409)
|||||+.++ ++.|+.++++++.|++||+++++++++|+|||||||||||..
T Consensus 80 SiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~ 159 (413)
T cd02873 80 SVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSV 159 (413)
T ss_pred eecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhcccccccc
Confidence 999998621 357999999999999999999999999999999999999962
Q ss_pred -----cccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCcccccCCCChhHHhccccEEEeeccCCCCCCCCC-
Q 043488 145 -----SRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQN- 218 (409)
Q Consensus 145 -----~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~~~~~~~~y~~~~l~~~vD~v~vm~YD~~~~~~~~- 218 (409)
++|+++|+.||++||++|++.+ ++|++++++.... ...||+++|.++|||||||+||+|++|+..
T Consensus 160 ~~~~~~~d~~nf~~Ll~elr~~l~~~~--------~~ls~av~~~~~~-~~~~d~~~l~~~vD~inlMtYD~~g~~~~~~ 230 (413)
T cd02873 160 VDEKAAEHKEQFTALVRELKNALRPDG--------LLLTLTVLPHVNS-TWYFDVPAIANNVDFVNLATFDFLTPERNPE 230 (413)
T ss_pred cCCCChhHHHHHHHHHHHHHHHhcccC--------cEEEEEecCCchh-ccccCHHHHhhcCCEEEEEEecccCCCCCCC
Confidence 3578999999999999998764 5888887643221 224899999999999999999999998753
Q ss_pred CCCCCCcCCCCC---CCCcHHHHHHHHHHcCCCCCceEEecceeeEEeeeccCCC-CCC--CCCcc-----CCCCCCCCc
Q 043488 219 FTGAHAALYDPN---SVSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPED-NGI--GAAAT-----GPALHDDGL 287 (409)
Q Consensus 219 ~~~~~apl~~~~---~~~~~~~~v~~~~~~g~p~~KivlGlp~yG~~~~~~~~~~-~~~--~~~~~-----g~~~~~~g~ 287 (409)
.++++|||+... ..++++.++++|++.|+|++||+||+|||||.|+++.+.. .+. .+++. |+...+.|.
T Consensus 231 ~~~~~apL~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~~g~ 310 (413)
T cd02873 231 EADYTAPIYELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPGPAGPQTKTPGL 310 (413)
T ss_pred ccCcCCccCCCccccccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCCCCCCCcCCCcc
Confidence 689999998643 3578999999999999999999999999999999886532 221 12333 344467789
Q ss_pred ccHHHHHHhhhcCC------CCeEEEEeccce-eEEEEe-------CcEEEEECCHHHHHHHHHHHHHcCCceEEEEecc
Q 043488 288 VTYKEVKNHIKNYG------PNVQVMYNSTYV-VNYCSI-------GKIWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVS 353 (409)
Q Consensus 288 ~~y~~i~~~~~~~~------~~~~~~~d~~~~-~~y~~~-------~~~~i~ydd~~Sl~~K~~~~~~~glgGi~iW~l~ 353 (409)
++|.|||+.+...+ ..++..||++.+ ++|.|. .++||+|||++|++.|++|++++||||+|+|+++
T Consensus 311 l~y~ei~~~~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~l~ 390 (413)
T cd02873 311 LSWPEICSKLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDLS 390 (413)
T ss_pred ccHHHHHHhhccCccccccccceeEeecccccccceEEeccccCCCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEeee
Confidence 99999999876421 015677898876 588882 2579999999999999999999999999999999
Q ss_pred CCCchh
Q 043488 354 SDHYWM 359 (409)
Q Consensus 354 ~Dd~~~ 359 (409)
+||+.+
T Consensus 391 ~DD~~g 396 (413)
T cd02873 391 LDDFRG 396 (413)
T ss_pred cCcCCC
Confidence 999754
No 4
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-63 Score=494.81 Aligned_cols=336 Identities=27% Similarity=0.496 Sum_probs=291.5
Q ss_pred ccCCcEEEEEEeCCC-CCCCcCCCCCCccEEEEEEEEEeCCCeEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCC
Q 043488 22 RAQTLIRAGYWDSDD-GFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLSIGGGNN 100 (409)
Q Consensus 22 ~~~~~~v~gY~~~~~-~~~~~~i~~~~~Thii~~f~~i~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGG~~~ 100 (409)
..+.++++|||.++. ...+.+++..+|||++|+|+.++.++..+...+.....+..+.+.+|.++|++|+|+|||||.+
T Consensus 54 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~~~~~f~~~~~~~k~~n~~vK~llSIGG~~~ 133 (432)
T KOG2806|consen 54 TVCEKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGARTMNRFSSYNQTAKSSNPTVKVMISIGGSHG 133 (432)
T ss_pred ccccceeEEEeCCCCCCCCccccChhhcCcceEEEeeecccccEEeccchhhhhhHHHHHHHHhhCCCceEEEEecCCCC
Confidence 346788999998877 8899999999999999999999999876666665566788888899999999999999999943
Q ss_pred CCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccC-CcccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEE
Q 043488 101 PNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQAN-TSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTA 179 (409)
Q Consensus 101 ~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~-~~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~ 179 (409)
+++.|+.+++|++.|+.||+++++++++|+|||||||||||. .+.|+.+|..|++|||++|.++.+ .+.++...|+.
T Consensus 134 -ns~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~~~~~~~~-~~~~~~~~l~~ 211 (432)
T KOG2806|consen 134 -NSGLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRSAFARETL-KSPDTAKVLEA 211 (432)
T ss_pred -CccchhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHHHHHHHhh-ccCCccceeee
Confidence 589999999999999999999999999999999999999995 458999999999999999999877 66666545666
Q ss_pred EeecCcc-cccCCCChhHHhccccEEEeeccCCCCCCCCC-CCCCCCcCCCC----CCCCcHHHHHHHHHHcCCCCCceE
Q 043488 180 KVAYSPL-STAAAYPVDSIRQYLNWVHVITTEYSSPTWQN-FTGAHAALYDP----NSVSNTEYGITEWIEEGLSADKLV 253 (409)
Q Consensus 180 a~~~~~~-~~~~~y~~~~l~~~vD~v~vm~YD~~~~~~~~-~~~~~apl~~~----~~~~~~~~~v~~~~~~g~p~~Kiv 253 (409)
++...+. ....+||+.+|.+++||||||+|||||+|..+ .+||+||||.+ ...++++..+++|++.|.|++|++
T Consensus 212 ~v~~~~~~~~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~ky~~~~~~~~~Kl~ 291 (432)
T KOG2806|consen 212 VVADSKQSAYSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDSLLKYWTEKGLPPSKLV 291 (432)
T ss_pred ccccCccchhhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhhhHHHHhhcCCCchheE
Confidence 6654443 56667999999999999999999999999764 89999999975 345799999999999999999999
Q ss_pred EecceeeEEeeeccCCCCCCCCCccCCCC------CCCCcccHHHHHHhhhcCCCCeEEEEeccceeEEEEe--CcEEEE
Q 043488 254 LCLPFYGYAWTLVKPEDNGIGAAATGPAL------HDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSI--GKIWFG 325 (409)
Q Consensus 254 lGlp~yG~~~~~~~~~~~~~~~~~~g~~~------~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~--~~~~i~ 325 (409)
||+||||+.|++++...+ ++.+..+++. ..+|.++|.|||+...+.+ ...||++.+++|+|. +++||+
T Consensus 292 ~gip~yg~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~---~~~~d~~~~~~Y~~~~~~~~wvt 367 (432)
T KOG2806|consen 292 LALPFYGRSWQLLEDSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG---VTHWDEETQTPYLYNIPYDQWVT 367 (432)
T ss_pred EEEecceehhhhcCCcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcccC---CceecCCceeeeEEecCCCeEEe
Confidence 999999999999987665 5544443322 3678999999999555433 689999999999998 999999
Q ss_pred ECCHHHHHHHHHHHHHcCCceEEEEeccCCCchh-HHHH
Q 043488 326 FDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHYWM-LSQA 363 (409)
Q Consensus 326 ydd~~Sl~~K~~~~~~~glgGi~iW~l~~Dd~~~-L~~a 363 (409)
|||++|++.|++||++++|||+++|++++||+.. ++++
T Consensus 368 yen~~Si~~K~~Yvk~~~lGGv~iW~vd~DD~~~~~~~~ 406 (432)
T KOG2806|consen 368 YENERSIHIKADYAKDEGLGGVAIWNIDQDDESGSLLNA 406 (432)
T ss_pred cCCHHHHHHHHHHHHhcCCceEEEEeccCCCCCCccccc
Confidence 9999999999999999999999999999999554 4554
No 5
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=2.4e-62 Score=477.79 Aligned_cols=316 Identities=33% Similarity=0.633 Sum_probs=274.6
Q ss_pred EEEEEEeCCC----CCCCcCCCCCCccEEEEEEEEEeCCCeEEecCCcch--hHHHHHHHHHHhhCCCcEEEEEEcCCCC
Q 043488 27 IRAGYWDSDD----GFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDE--KQFSNFTDTVKIKNPSITTLLSIGGGNN 100 (409)
Q Consensus 27 ~v~gY~~~~~----~~~~~~i~~~~~Thii~~f~~i~~~~~~~~~~~~~~--~~~~~~~~~lk~~~p~~kvllsiGG~~~ 100 (409)
+++|||++|. .|.+++++.++||||+|+|+.++++| ++...+... ..+..+. .+|+++|++|+|++||||..
T Consensus 1 ~~~~Y~~~w~~~~~~~~~~~~~~~~~thv~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~-~l~~~~~~~kvl~svgg~~~ 78 (334)
T smart00636 1 RVVGYFTNWGVYGRNFPVDDIPASKLTHIIYAFANIDPDG-TVTIGDEWADIGNFGQLK-ALKKKNPGLKVLLSIGGWTE 78 (334)
T ss_pred CEEEEECchhccCCCCChhHCCcccCcEEEEeeeeeCCCC-CEeeCCcchhhhhHHHHH-HHHHhCCCCEEEEEEeCCCC
Confidence 4799999955 37899999999999999999999965 666554332 3455654 68899999999999999986
Q ss_pred CCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCc-ccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEE
Q 043488 101 PNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTS-RDKYNIGILFKEWRAAVALEARNNSSQSQLILTA 179 (409)
Q Consensus 101 ~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~-~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~ 179 (409)
++.|+.++++++.|++|++++++++++|+|||||||||+|... .++.+|+.|+++||++|++.++ + .++++||+
T Consensus 79 --s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~~~--~-~~~~~lsi 153 (334)
T smart00636 79 --SDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKEGA--E-GKGYLLTI 153 (334)
T ss_pred --CcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHhcc--c-CCceEEEE
Confidence 6889999999999999999999999999999999999999753 5788999999999999997621 1 23589999
Q ss_pred EeecCcccccCCCC-hhHHhccccEEEeeccCCCCCCCCCCCCCCCcCCCCCC---CCcHHHHHHHHHHcCCCCCceEEe
Q 043488 180 KVAYSPLSTAAAYP-VDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYDPNS---VSNTEYGITEWIEEGLSADKLVLC 255 (409)
Q Consensus 180 a~~~~~~~~~~~y~-~~~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~~---~~~~~~~v~~~~~~g~p~~KivlG 255 (409)
++|+.+......|+ +.++.+++|+|+||+||+|++|. ..+||+|||+.... ..+++.+++.|++.|+|++||+||
T Consensus 154 ~v~~~~~~~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~-~~~g~~spl~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlG 232 (334)
T smart00636 154 AVPAGPDKIDKGYGDLPAIAKYLDFINLMTYDFHGAWS-NPTGHNAPLYAGPGDPEKYNVDYAVKYYLCKGVPPSKLVLG 232 (334)
T ss_pred EecCChHHHHhhhhhHHHHHhhCcEEEEeeeccCCCCC-CCCCCCCcCCCCCCCCCCccHHHHHHHHHHcCCCHHHeEEe
Confidence 99976655444578 59999999999999999999874 47999999986432 468999999999999999999999
Q ss_pred cceeeEEeeeccCCCCCCCCCccCCCC-----CCCCcccHHHHHHhhhcCCCCeEEEEeccceeEEEEe-C-cEEEEECC
Q 043488 256 LPFYGYAWTLVKPEDNGIGAAATGPAL-----HDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSI-G-KIWFGFDD 328 (409)
Q Consensus 256 lp~yG~~~~~~~~~~~~~~~~~~g~~~-----~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~-~-~~~i~ydd 328 (409)
+||||+.|++.++.++++++|+.|++. ...|.++|.|||+.+ + +...||++++++|.|. + ++||+|||
T Consensus 233 ip~YG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~---~--~~~~~d~~~~~~y~~~~~~~~~v~ydd 307 (334)
T smart00636 233 IPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL---G--ATVVWDDTAKAPYAYNPGTGQWVSYDD 307 (334)
T ss_pred eccccCccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhc---C--cEEEEcCCCceeEEEECCCCEEEEcCC
Confidence 999999999999888888999877643 367889999999875 5 8999999999999995 4 59999999
Q ss_pred HHHHHHHHHHHHHcCCceEEEEeccCC
Q 043488 329 VEAVRVKVAYAKEKKLRGYYVWEVSSD 355 (409)
Q Consensus 329 ~~Sl~~K~~~~~~~glgGi~iW~l~~D 355 (409)
++|++.|++|++++||||+++|++++|
T Consensus 308 ~~Si~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 308 PRSIKAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeecCC
Confidence 999999999999999999999999997
No 6
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-62 Score=466.01 Aligned_cols=340 Identities=25% Similarity=0.421 Sum_probs=272.4
Q ss_pred ccCCcEEEEEEeCCC-----CCCCcCCCCCCccEEEEEEEEEeCCCeEEe-------------------cC-Cc--chhH
Q 043488 22 RAQTLIRAGYWDSDD-----GFPVSDVNSALFTHLMCGFADVNSTSYELS-------------------LS-PS--DEKQ 74 (409)
Q Consensus 22 ~~~~~~v~gY~~~~~-----~~~~~~i~~~~~Thii~~f~~i~~~~~~~~-------------------~~-~~--~~~~ 74 (409)
..++.+++|||++|+ .|.+.+||++++|||+|+|+.++.++.... .. +. ....
T Consensus 34 ~d~~~rvvgYY~sWs~~d~~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G~ 113 (441)
T COG3325 34 SDDQFKVVGYYTSWSQYDRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKGH 113 (441)
T ss_pred CCCCceEEEEecccccCCCcccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccch
Confidence 446789999999943 567899999999999999999999874210 00 00 1223
Q ss_pred HHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCC---------c
Q 043488 75 FSNFTDTVKIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANT---------S 145 (409)
Q Consensus 75 ~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~---------~ 145 (409)
+..+ +.+|+++|++|+++|||||+. |..|+.++.+++.|++|++++++++++|+|||||||||||++ +
T Consensus 114 ~~~L-~~lk~~~~d~k~l~SIGGWs~--S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~ 190 (441)
T COG3325 114 FGAL-FDLKATYPDLKTLISIGGWSD--SGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRP 190 (441)
T ss_pred HHHH-HHHhhhCCCceEEEeeccccc--CCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCc
Confidence 4444 579999999999999999997 899999999999999999999999999999999999999984 4
Q ss_pred ccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCcccccCCCChhHHhccccEEEeeccCCCCCCCCCCCCCCCc
Q 043488 146 RDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAA 225 (409)
Q Consensus 146 ~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~~~~~~~~y~~~~l~~~vD~v~vm~YD~~~~~~~~~~~~~ap 225 (409)
.++++|+.||++||++|++.+. .+||. |.||+|.|+.+.... ..+..++.++|||||+|||||||+| ...+|||||
T Consensus 191 ~d~~ny~~Ll~eLR~~LD~a~~-edgr~-Y~LTiA~~as~~~l~-~~~~~~~~~~vDyiNiMTYDf~G~W-n~~~Gh~a~ 266 (441)
T COG3325 191 KDKANYVLLLQELRKKLDKAGV-EDGRH-YQLTIAAPASKDKLE-GLNHAEIAQYVDYINIMTYDFHGAW-NETLGHHAA 266 (441)
T ss_pred ccHHHHHHHHHHHHHHHhhccc-ccCce-EEEEEecCCchhhhh-cccHHHHHHHHhhhheeeeeccccc-ccccccccc
Confidence 6889999999999999999876 77775 999999999887766 6788999999999999999999997 567999999
Q ss_pred CCC----C--CC-CCcH------HHHHHHHHHcCCCCCceEEecceeeEEeeeccCCCCC----CCCCcc--CCC--CCC
Q 043488 226 LYD----P--NS-VSNT------EYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNG----IGAAAT--GPA--LHD 284 (409)
Q Consensus 226 l~~----~--~~-~~~~------~~~v~~~~~~g~p~~KivlGlp~yG~~~~~~~~~~~~----~~~~~~--g~~--~~~ 284 (409)
||+ | .+ .+.+ ...++.....++||+||+||+|||||.|..++....+ ...... |+. .+.
T Consensus 267 Ly~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~~Gtw~ 346 (441)
T COG3325 267 LYGTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTWE 346 (441)
T ss_pred cccCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCCCCccc
Confidence 994 1 11 1222 2244555667899999999999999999988865532 111111 111 121
Q ss_pred CCc--ccHH---HH-HHhhhcCCCCeEEEEeccceeEEEE--eCcEEEEECCHHHHHHHHHHHHHcCCceEEEEeccCCC
Q 043488 285 DGL--VTYK---EV-KNHIKNYGPNVQVMYNSTYVVNYCS--IGKIWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDH 356 (409)
Q Consensus 285 ~g~--~~y~---~i-~~~~~~~~~~~~~~~d~~~~~~y~~--~~~~~i~ydd~~Sl~~K~~~~~~~glgGi~iW~l~~Dd 356 (409)
.+. ..|. .+ .+....++ +.+.||+++++||+| ..+.+|+|||++|++.|.+||++++|||+|+|++++|-
T Consensus 347 a~n~~~~~~~~~~l~~n~~~~~g--~~~~~d~~a~apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD~ 424 (441)
T COG3325 347 AGNGDKDYGKAYDLDANNAGKNG--YERYWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGDE 424 (441)
T ss_pred ccccCccchhhccccccccCCCC--eeEecccccccceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCCc
Confidence 121 2221 22 22334456 999999999999999 56899999999999999999999999999999999999
Q ss_pred chhHHHHHHHhhhc
Q 043488 357 YWMLSQAAAEEDKR 370 (409)
Q Consensus 357 ~~~L~~a~~~~~~~ 370 (409)
...|++++.+...-
T Consensus 425 n~~llna~~~~l~~ 438 (441)
T COG3325 425 NGVLLNAVNEGLGF 438 (441)
T ss_pred chhHHHHhhcccCC
Confidence 99999999887553
No 7
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=7.9e-62 Score=473.84 Aligned_cols=308 Identities=17% Similarity=0.312 Sum_probs=252.5
Q ss_pred EEEEEEeCC------CCCCCcCCCCCCccEEEEEEEEEeCCCeEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCC
Q 043488 27 IRAGYWDSD------DGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLSIGGGNN 100 (409)
Q Consensus 27 ~v~gY~~~~------~~~~~~~i~~~~~Thii~~f~~i~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGG~~~ 100 (409)
+++|||++| ..+.+++||.++||||+|+|+.+++++ ++...+ ....+..+.+ +| ++|+++|||||+.
T Consensus 1 ~~v~Y~~~w~~~r~~~~~~~~~i~~~~~THi~yaf~~~~~~g-~l~~~~-~~~~~~~~~~-~k----~lkvllsiGG~~~ 73 (345)
T cd02878 1 KNIAYFEAYNLDRPCLNMDVTQIDTSKYTHIHFAFANITSDF-SVDVSS-VQEQFSDFKK-LK----GVKKILSFGGWDF 73 (345)
T ss_pred CEEEEEChhhcCCCCCCCCHhHCCcccCCEEEEEeEeecCCC-eEeecc-cHHHHHHHHh-hc----CcEEEEEEeCCCC
Confidence 479999995 257889999999999999999999875 666543 3344444432 22 3999999999986
Q ss_pred CCC----cccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCC----------cccHhhHHHHHHHHHHHHHHHh
Q 043488 101 PNY----SSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANT----------SRDKYNIGILFKEWRAAVALEA 166 (409)
Q Consensus 101 ~~~----~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~----------~~~~~~~~~ll~~Lr~~l~~~~ 166 (409)
+.. ..|+.++ +++.|++|++++++++++|+|||||||||+|.. ++|+++|+.||++||++|++ +
T Consensus 74 s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~-~ 151 (345)
T cd02878 74 STSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPS-G 151 (345)
T ss_pred CCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCc-C
Confidence 111 1488888 999999999999999999999999999999963 35789999999999999975 2
Q ss_pred hcCCCCceeEEEEEeecCcccccCCCChhHHhccccEEEeeccCCCCCCCCCCCCCCCcCC-------CCCCCCcHHHHH
Q 043488 167 RNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALY-------DPNSVSNTEYGI 239 (409)
Q Consensus 167 ~~~~~~~~~~Ls~a~~~~~~~~~~~y~~~~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl~-------~~~~~~~~~~~v 239 (409)
++||+++|+.+... ..||++++.+++||||||+||+||+|.. .+++++|.. ......+++.+|
T Consensus 152 --------~~ls~a~~~~~~~~-~~yd~~~l~~~vD~i~vMtYD~~g~w~~-~~~~~~p~~p~~~~~~~~~~~~~~~~~v 221 (345)
T cd02878 152 --------KSLSIAAPASYWYL-KGFPIKDMAKYVDYIVYMTYDLHGQWDY-GNKWASPGCPAGNCLRSHVNKTETLDAL 221 (345)
T ss_pred --------cEEEEEcCCChhhh-cCCcHHHHHhhCcEEEEEeecccCCcCc-cCCcCCCCCCcccccccCCCchhHHHHH
Confidence 58999988765432 3589999999999999999999999863 344444421 111123588999
Q ss_pred HHHHHcCCCCCceEEecceeeEEeeeccCCCCCCCCCccCCCC--------CCCCcccHHHHHHhh-hcCCCCeEEEEec
Q 043488 240 TEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNGIGAAATGPAL--------HDDGLVTYKEVKNHI-KNYGPNVQVMYNS 310 (409)
Q Consensus 240 ~~~~~~g~p~~KivlGlp~yG~~~~~~~~~~~~~~~~~~g~~~--------~~~g~~~y~~i~~~~-~~~~~~~~~~~d~ 310 (409)
+.|++.|+|++||+||+|||||.|+++++.++++++|+.|++. +..|.+.|.++|..+ ..++ ++..||+
T Consensus 222 ~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~~--~~~~~d~ 299 (345)
T cd02878 222 SMITKAGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKSK--NKRWYDT 299 (345)
T ss_pred HHHHHcCCCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccCC--CcEEEec
Confidence 9999999999999999999999999999999999999988642 233455569999854 4456 8999999
Q ss_pred cceeEEE-EeCcEEEEECCHHHHHHHHHHHHHcCCceEEEEeccCC
Q 043488 311 TYVVNYC-SIGKIWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSD 355 (409)
Q Consensus 311 ~~~~~y~-~~~~~~i~ydd~~Sl~~K~~~~~~~glgGi~iW~l~~D 355 (409)
++++||. +.+.+||+|||++|++.|++|++++||||+|+|++++|
T Consensus 300 ~~~~~y~~~~~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 300 DSDSDILVYDDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred CCCccEEEEcCCEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 9999987 56779999999999999999999999999999999987
No 8
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=1.8e-61 Score=468.15 Aligned_cols=283 Identities=28% Similarity=0.519 Sum_probs=246.5
Q ss_pred EEEEEeCCCCCC----Cc-CCCCCCccEEEEEEEEEeCCCeEEecC-------------------CcchhHHHHHHHHHH
Q 043488 28 RAGYWDSDDGFP----VS-DVNSALFTHLMCGFADVNSTSYELSLS-------------------PSDEKQFSNFTDTVK 83 (409)
Q Consensus 28 v~gY~~~~~~~~----~~-~i~~~~~Thii~~f~~i~~~~~~~~~~-------------------~~~~~~~~~~~~~lk 83 (409)
|+|||++|..+. +. ++|.++||||+|+|+.+++++..+... +.....+..+. .+|
T Consensus 1 v~~Y~~~W~~~~~~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lk 79 (322)
T cd06548 1 VVGYFTNWGIYGRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLR-KLK 79 (322)
T ss_pred CEEEeCCCcccCCCCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHH-HHH
Confidence 589999965543 33 589999999999999999987655422 11334566665 689
Q ss_pred hhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCC---------cccHhhHHHH
Q 043488 84 IKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANT---------SRDKYNIGIL 154 (409)
Q Consensus 84 ~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~---------~~~~~~~~~l 154 (409)
+++|++||++|||||+. +..|+.++++++.|++|++++++++++|+|||||||||+|.. ++++.+|+.|
T Consensus 80 ~~~p~lkvl~siGG~~~--s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~l 157 (322)
T cd06548 80 QKNPHLKILLSIGGWTW--SGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLL 157 (322)
T ss_pred HhCCCCEEEEEEeCCCC--CCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHH
Confidence 99999999999999986 689999999999999999999999999999999999999975 4789999999
Q ss_pred HHHHHHHHHHHhhcCCCCceeEEEEEeecCcccccCCCChhHHhccccEEEeeccCCCCCCCCCCCCCCCcCCCCC----
Q 043488 155 FKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYDPN---- 230 (409)
Q Consensus 155 l~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~~~~~~~~y~~~~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~---- 230 (409)
+++||++|++.+. .+++ +++||+++|+.+.... .++++++.++||+||||+||+||+|. ..++|+|||+...
T Consensus 158 l~~Lr~~l~~~~~-~~~~-~~~Ls~av~~~~~~~~-~~~~~~l~~~vD~vnlMtYD~~g~w~-~~~g~~spL~~~~~~~~ 233 (322)
T cd06548 158 LKELREALDALGA-ETGR-KYLLTIAAPAGPDKLD-KLEVAEIAKYLDFINLMTYDFHGAWS-NTTGHHSNLYASPADPP 233 (322)
T ss_pred HHHHHHHHHHhhh-ccCC-ceEEEEEccCCHHHHh-cCCHHHHhhcCCEEEEEEeeccCCCC-CCCCCCCCCCCCCCCCC
Confidence 9999999998753 3333 4899999997765433 47899999999999999999999986 6799999999643
Q ss_pred CCCcHHHHHHHHHHcCCCCCceEEecceeeEEeeeccCCCCCCCCCccCCCCCCCCcccHHHHHHhhhcCCCCeEEEEec
Q 043488 231 SVSNTEYGITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNGIGAAATGPALHDDGLVTYKEVKNHIKNYGPNVQVMYNS 310 (409)
Q Consensus 231 ~~~~~~~~v~~~~~~g~p~~KivlGlp~yG~~~~~~~~~~~~~~~~~~g~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~ 310 (409)
...+++.+++.|++.|+|++||+||||+|||.|++ ++..||+
T Consensus 234 ~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~--------------------------------------~~~~~D~ 275 (322)
T cd06548 234 GGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG--------------------------------------YTRYWDE 275 (322)
T ss_pred CCccHHHHHHHHHHcCCCHHHeEEEecccccccCC--------------------------------------cEEEEcC
Confidence 36789999999999999999999999999999963 4679999
Q ss_pred cceeEEEEeC--cEEEEECCHHHHHHHHHHHHHcCCceEEEEeccCC
Q 043488 311 TYVVNYCSIG--KIWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSD 355 (409)
Q Consensus 311 ~~~~~y~~~~--~~~i~ydd~~Sl~~K~~~~~~~glgGi~iW~l~~D 355 (409)
.+++||.+.+ ++||+|||++|++.|++||+++||||+|+|++++|
T Consensus 276 ~~~~~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 276 VAKAPYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred CcceeEEEeCCCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 9999999966 89999999999999999999999999999999997
No 9
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=3.8e-56 Score=435.58 Aligned_cols=320 Identities=31% Similarity=0.580 Sum_probs=270.8
Q ss_pred cEEEEEEeCCCC-----CCCcCCCCCCccEEEEEEEEEeCCCeEEe------cCCcchhHHHHHHHHHHhhCCCcEEEEE
Q 043488 26 LIRAGYWDSDDG-----FPVSDVNSALFTHLMCGFADVNSTSYELS------LSPSDEKQFSNFTDTVKIKNPSITTLLS 94 (409)
Q Consensus 26 ~~v~gY~~~~~~-----~~~~~i~~~~~Thii~~f~~i~~~~~~~~------~~~~~~~~~~~~~~~lk~~~p~~kvlls 94 (409)
++++|||.+++. +.+++++.+.||||+|+|+.+++++.... ........+..+ +.+|+++|++||++|
T Consensus 1 ~~vv~Y~~~~~~~~~~~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kvlls 79 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPGSYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNL-KELKAKNPGVKVLLS 79 (343)
T ss_dssp BEEEEEEEGGGGSSTGCSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHH-HHHHHHHTT-EEEEE
T ss_pred CEEEEEECCcCCCCCCCCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHH-HHHHhhccCceEEEE
Confidence 579999999543 66889999999999999999999986532 223234444444 568899999999999
Q ss_pred EcCCCCCCCc-ccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCc---ccHhhHHHHHHHHHHHHHHHhhcCC
Q 043488 95 IGGGNNPNYS-SYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTS---RDKYNIGILFKEWRAAVALEARNNS 170 (409)
Q Consensus 95 iGG~~~~~~~-~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~---~~~~~~~~ll~~Lr~~l~~~~~~~~ 170 (409)
|||+.. +. .|..++++++.|++|++++++++++|+|||||||||++... +++.+|..|+++||++|++..+ ..
T Consensus 80 igg~~~--~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~-~~ 156 (343)
T PF00704_consen 80 IGGWGM--SSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRANR-SG 156 (343)
T ss_dssp EEETTS--SHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred eccccc--cccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhccccc-cc
Confidence 999986 55 89999999999999999999999999999999999999862 4899999999999999998632 11
Q ss_pred CCceeEEEEEeecCcccccCCCChhHHhccccEEEeeccCCCCCCCCCCCCCCCcCCCCC---CCCcHHHHHHHHHHcCC
Q 043488 171 SQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYDPN---SVSNTEYGITEWIEEGL 247 (409)
Q Consensus 171 ~~~~~~Ls~a~~~~~~~~~~~y~~~~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~---~~~~~~~~v~~~~~~g~ 247 (409)
.+++||+++|+.+.... .++++++.+++|+|++|+||++++|.. .+++++|+++.. ...+++.+++.|++.|+
T Consensus 157 --~~~~ls~a~p~~~~~~~-~~~~~~l~~~vD~v~~m~yD~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~g~ 232 (343)
T PF00704_consen 157 --KGYILSVAVPPSPDYYD-KYDYKELAQYVDYVNLMTYDYHGPWSD-VTGPNAPLYDSSWDSNYYSVDSAVQYWIKAGV 232 (343)
T ss_dssp --STSEEEEEEECSHHHHT-THHHHHHHTTSSEEEEETTSSSSTTSS-BETTSSSSSHTTTSGTSSSHHHHHHHHHHTTS
T ss_pred --ceeEEeecccccccccc-ccccccccccccccccccccCCCCccc-ccccccccccCCccCCCceeeeehhhhccccC
Confidence 13799999987665333 358899999999999999999998765 899999998654 36789999999999999
Q ss_pred CCCceEEecceeeEEeeeccCCCCCCCCCc---cCCCCCCCCcccHHHHHHhhhcCCCCeEEEEeccceeEEEEeC--cE
Q 043488 248 SADKLVLCLPFYGYAWTLVKPEDNGIGAAA---TGPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIG--KI 322 (409)
Q Consensus 248 p~~KivlGlp~yG~~~~~~~~~~~~~~~~~---~g~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~--~~ 322 (409)
|++||+||+|+||+.|++.++..+...++. .+......+.++|.++|..+++++ +...||+.++++|.+.. ++
T Consensus 233 p~~Kl~lglp~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~y~~~~~~~~ 310 (343)
T PF00704_consen 233 PPSKLVLGLPFYGRSWTLVNGSPNGPWGPAYWSPGKGTKNAGILSYYELCALLKSNG--YTVQWDDTAQAPYAYNDDKKH 310 (343)
T ss_dssp TGGGEEEEEESEEEEEESSSSTTSTTTBBEESEETTTTSBTTEEEHHHHHHHTHHTT--EEEEEETTTTEEEEEETTTTE
T ss_pred ChhheeecCCcccccceecCCcCCCCCCcccccccccccCCCccccccchhhcccCC--cceEEeecccceEEEecCCCe
Confidence 999999999999999999988777766554 445556788999999999998888 99999999999999966 89
Q ss_pred EEEECCHHHHHHHHHHHHHcCCceEEEEeccCC
Q 043488 323 WFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSD 355 (409)
Q Consensus 323 ~i~ydd~~Sl~~K~~~~~~~glgGi~iW~l~~D 355 (409)
||+|||++|++.|++|++++||||+++|++++|
T Consensus 311 ~i~~e~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 311 WISYEDPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp EEEE--HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred EEEeCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 999999999999999999999999999999997
No 10
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=1.3e-55 Score=426.77 Aligned_cols=290 Identities=19% Similarity=0.272 Sum_probs=240.0
Q ss_pred EEEEEEeCCC--CCCCcCCCCCCccEEEEEEEEEeCCCeEEecCCcchhHHHHHHHHHHhhCCCcEEE--EEEcCCCCCC
Q 043488 27 IRAGYWDSDD--GFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTL--LSIGGGNNPN 102 (409)
Q Consensus 27 ~v~gY~~~~~--~~~~~~i~~~~~Thii~~f~~i~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvl--lsiGG~~~~~ 102 (409)
.++|||++|. .+.+.+++.++||||+++|+.++++|+.+...+..... ..+++.+|+++|++||+ +++|||+.
T Consensus 4 ~~~~y~~~W~~~~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~~~~~~-~~~~~~lk~~~~~lkvlp~i~~gg~~~-- 80 (318)
T cd02876 4 PVLGYVTPWNSHGYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEGTHDID-KGWIEEVRKANKNIKILPRVLFEGWSY-- 80 (318)
T ss_pred ceEEEEcCcCccchHHHHHHhccCCEecceEEEEecCCCeeeeecCcchh-hHHHHHHHhhCCCcEEEeEEEECCCCH--
Confidence 4789999954 56778899999999999999999887655544321111 23445789999999999 67799875
Q ss_pred CcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEe-eeccCC---cccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEE
Q 043488 103 YSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLS-WNQANT---SRDKYNIGILFKEWRAAVALEARNNSSQSQLILT 178 (409)
Q Consensus 103 ~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiD-wE~p~~---~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls 178 (409)
+.|+.++++++.|++|++++++++++||||||||| ||+|.. ++++++|+.|+++||++|++.+ +.++
T Consensus 81 -~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~~~~--------~~l~ 151 (318)
T cd02876 81 -QDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHSAN--------LKLI 151 (318)
T ss_pred -HHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHhhcC--------CEEE
Confidence 46999999999999999999999999999999999 999974 3589999999999999999765 4677
Q ss_pred EEeecCccc-----ccCCCChhHHhccccEEEeeccCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHcC-CCCCce
Q 043488 179 AKVAYSPLS-----TAAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYDPNSVSNTEYGITEWIEEG-LSADKL 252 (409)
Q Consensus 179 ~a~~~~~~~-----~~~~y~~~~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g-~p~~Ki 252 (409)
+++|+.... ....||++++.+++|+|+||+||+|++ ..+||+||++ +++.+++++++.| +|++||
T Consensus 152 ~~v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~---~~~g~~apl~------~v~~~v~~~~~~~~vp~~Kl 222 (318)
T cd02876 152 LVIPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP---QRPGPNAPLS------WVRSCLELLLPESGKKRAKI 222 (318)
T ss_pred EEEcCccccccccccccccCHHHHHhhccEEEEEeeccCCC---CCCCCCCCcH------HHHHHHHHHHhcCCCCHHHe
Confidence 777643321 223479999999999999999999986 5799999998 8999999999987 999999
Q ss_pred EEecceeeEEeeeccCCCCCCCCCccCCCCCCCCcccHHHHHHhhhcCCCCeEEEEeccceeE-EEEeC---cEEEEECC
Q 043488 253 VLCLPFYGYAWTLVKPEDNGIGAAATGPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVN-YCSIG---KIWFGFDD 328 (409)
Q Consensus 253 vlGlp~yG~~~~~~~~~~~~~~~~~~g~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~-y~~~~---~~~i~ydd 328 (409)
+||||+|||.|++.+ .+ +.+++.+.+++++..+ ++..||++++.+ |.|.+ ++||||||
T Consensus 223 vlGip~YG~~w~~~~-----~~-----------~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~y~~~~~~~~v~ydd 284 (318)
T cd02876 223 LLGLNFYGNDYTLPG-----GG-----------GAITGSEYLKLLKSNK--PKLQWDEKSAEHFFEYKNKGGKHAVFYPT 284 (318)
T ss_pred EEeccccccccccCC-----CC-----------ceeehHHHHHHHHhcC--CCceeccCCCcceEEEecCCCcEEEEeCC
Confidence 999999999998643 11 2234455556666666 889999996554 77743 79999999
Q ss_pred HHHHHHHHHHHHHcCCceEEEEeccCCC
Q 043488 329 VEAVRVKVAYAKEKKLRGYYVWEVSSDH 356 (409)
Q Consensus 329 ~~Sl~~K~~~~~~~glgGi~iW~l~~Dd 356 (409)
++|++.|+++++++|| |+|+|++++++
T Consensus 285 ~~Si~~K~~~a~~~~l-Gv~~W~lg~~~ 311 (318)
T cd02876 285 LKSIQLRLDLAKELGT-GISIWELGQGL 311 (318)
T ss_pred HHHHHHHHHHHHHcCC-cEEEEcccCCc
Confidence 9999999999999999 99999999987
No 11
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=1.3e-53 Score=416.86 Aligned_cols=298 Identities=20% Similarity=0.265 Sum_probs=239.9
Q ss_pred CCcEEEEEEeCCCCCCCcCCCCCCccEEEEEEEEEeCCCeEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCC
Q 043488 24 QTLIRAGYWDSDDGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLSIGGGNNPNY 103 (409)
Q Consensus 24 ~~~~v~gY~~~~~~~~~~~i~~~~~Thii~~f~~i~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGG~~~~~~ 103 (409)
+++.|+||.... ..-...+++.+|||..+ + +.+ .+++..+| .+++||+++ |+..
T Consensus 34 ~~~~~~~~~~~~--~~~~~~~~~~~tti~~~-------~------~~~----~~~~~~A~--~~~v~v~~~-~~~~---- 87 (358)
T cd02875 34 PRFEFLVFSVNS--TNYPNYDWSKVTTIAIF-------G------DID----DELLCYAH--SKGVRLVLK-GDVP---- 87 (358)
T ss_pred CceEEEEEEeCC--CcCcccccccceEEEec-------C------CCC----HHHHHHHH--HcCCEEEEE-CccC----
Confidence 467899999764 34467899999999976 1 111 13443333 448999987 3221
Q ss_pred cccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCC--cccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEe
Q 043488 104 SSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANT--SRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKV 181 (409)
Q Consensus 104 ~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~--~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~ 181 (409)
...+.+++.|++|++++++++++|||||||||||+|.. +.++++|+.|+++||++|+++++ .++||+++
T Consensus 88 ---~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~~~------~~~Lsvav 158 (358)
T cd02875 88 ---LEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKENP------GYQISFDV 158 (358)
T ss_pred ---HHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhcCC------CcEEEEEE
Confidence 13577999999999999999999999999999999974 46889999999999999998643 47899999
Q ss_pred ecCcccccCC-CChhHHhccccEEEeeccCCCCC-CC-CCCCCCCCcCCCCCCCCcHHHHHHHHHHcCCCCCceEEecce
Q 043488 182 AYSPLSTAAA-YPVDSIRQYLNWVHVITTEYSSP-TW-QNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPF 258 (409)
Q Consensus 182 ~~~~~~~~~~-y~~~~l~~~vD~v~vm~YD~~~~-~~-~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~p~~KivlGlp~ 258 (409)
+..+.....+ ||+++|.+++|||+||+||+|++ |. ...++++||+. +++.++++|++.|+|++||+||+|+
T Consensus 159 ~~~p~~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~------~v~~~v~~~~~~gvp~~KLvLGip~ 232 (358)
T cd02875 159 AWSPSCIDKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYS------QTLSGYNNFTKLGIDPKKLVMGLPW 232 (358)
T ss_pred ecCcccccccccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCch------hHHHHHHHHHHcCCCHHHeEEEeCC
Confidence 8766544433 99999999999999999999986 43 34689999987 8999999999999999999999999
Q ss_pred eeEEeeeccCCCC-----CCCCCccCCCC--CCCCcccHHHHHHhhhcCCCCeEEEEeccceeEEEE-e---C-cEEEEE
Q 043488 259 YGYAWTLVKPEDN-----GIGAAATGPAL--HDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCS-I---G-KIWFGF 326 (409)
Q Consensus 259 yG~~~~~~~~~~~-----~~~~~~~g~~~--~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~-~---~-~~~i~y 326 (409)
|||.|++.+++.. ..+.|..|... ..++.++|.|+|+.+++.+ +...||+.+++||++ . + .+||||
T Consensus 233 YGr~w~~~~~~~~~~~~~~~~~p~~g~~~~~~~g~~i~Y~ei~~~~~~~~--~~~~wD~~~~~py~~y~d~~g~~~~V~y 310 (358)
T cd02875 233 YGYDYPCLNGNLEDVVCTIPKVPFRGANCSDAAGRQIPYSEIMKQINSSI--GGRLWDSEQKSPFYNYKDKQGNLHQVWY 310 (358)
T ss_pred CCCceeCCCCcccCcccCCCCCCcCCCCCcCCCCCccCHHHHHHHHhcCC--CceeeccccccceEEEecCCCcEEEEEe
Confidence 9999997665411 22334443221 1345799999999888777 789999999999874 2 3 379999
Q ss_pred CCHHHHHHHHHHHHHcCCceEEEEeccCCCchhHHHHH
Q 043488 327 DDVEAVRVKVAYAKEKKLRGYYVWEVSSDHYWMLSQAA 364 (409)
Q Consensus 327 dd~~Sl~~K~~~~~~~glgGi~iW~l~~Dd~~~L~~a~ 364 (409)
||++|++.|++|++++||||+++|++|+||+.+..+|.
T Consensus 311 dD~~Si~~K~~~a~~~gL~Gv~iW~ld~dD~~g~~~~~ 348 (358)
T cd02875 311 DNPQSLSIKVAYAKNLGLKGIGMWNGDLLDYSGLPIAE 348 (358)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEEeccccccCCCchhh
Confidence 99999999999999999999999999999998876655
No 12
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=2.2e-51 Score=396.76 Aligned_cols=291 Identities=20% Similarity=0.332 Sum_probs=240.6
Q ss_pred EEEEEEeCCCC--CCCcCCCCCCccEEEEEEEEEeCCCeEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCC--CC
Q 043488 27 IRAGYWDSDDG--FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLSIGGGNN--PN 102 (409)
Q Consensus 27 ~v~gY~~~~~~--~~~~~i~~~~~Thii~~f~~i~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGG~~~--~~ 102 (409)
.++|||+++.. +....-..+++|||++.++.++++|. +.... ...+++.+|++ ++|++++|||+.. .+
T Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g~-~~~~~-----~~~~~~~a~~~--~~kv~~~i~~~~~~~~~ 74 (313)
T cd02874 3 EVLGYYTPRNGSDYESLRANAPYLTYIAPFWYGVDADGT-LTGLP-----DERLIEAAKRR--GVKPLLVITNLTNGNFD 74 (313)
T ss_pred eEEEEEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCCC-CCCCC-----CHHHHHHHHHC--CCeEEEEEecCCCCCCC
Confidence 48999998554 34445577899999999999998863 32221 13555555554 8999999999862 14
Q ss_pred CcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEee
Q 043488 103 YSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVA 182 (409)
Q Consensus 103 ~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~ 182 (409)
++.++.++.+++.|++|++++++++++|||||||||||++.. +++.+|+.|+++||++|++.+ ++|+++++
T Consensus 75 ~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~-~d~~~~~~fl~~lr~~l~~~~--------~~lsv~~~ 145 (313)
T cd02874 75 SELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPP-EDREAYTQFLRELSDRLHPAG--------YTLSTAVV 145 (313)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCH-HHHHHHHHHHHHHHHHhhhcC--------cEEEEEec
Confidence 667899999999999999999999999999999999999874 789999999999999999764 57888776
Q ss_pred cCcc-----cccCCCChhHHhccccEEEeeccCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHcCCCCCceEEecc
Q 043488 183 YSPL-----STAAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLP 257 (409)
Q Consensus 183 ~~~~-----~~~~~y~~~~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~p~~KivlGlp 257 (409)
+... .+...|+++++.+++|+|+||+||+|++| +.+||+||+. +++..++++. .|+|++||+||||
T Consensus 146 p~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~--~~~gp~a~~~------~~~~~~~~~~-~gvp~~KlvlGip 216 (313)
T cd02874 146 PKTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRG--GPPGPVAPIG------WVERVLQYAV-TQIPREKILLGIP 216 (313)
T ss_pred CccccccccccccccCHHHHHhhCCEEEEEEeccCCCC--CCCCccCChH------HHHHHHHHHH-hcCCHHHEEEeec
Confidence 4422 12345899999999999999999999985 4689999986 7788887766 7899999999999
Q ss_pred eeeEEeeeccCCCCCCCCCccCCCCCCCCcccHHHHHHhhhcCCCCeEEEEeccceeEEE-E-e---CcEEEEECCHHHH
Q 043488 258 FYGYAWTLVKPEDNGIGAAATGPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYC-S-I---GKIWFGFDDVEAV 332 (409)
Q Consensus 258 ~yG~~~~~~~~~~~~~~~~~~g~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~-~-~---~~~~i~ydd~~Sl 332 (409)
+||+.|++.++. ....+.++|.++++++.+.+ +...||+.+++||. | + ..+||+|||++|+
T Consensus 217 ~YG~~w~~~~~~------------~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~y~~~~g~~~~v~y~d~~Si 282 (313)
T cd02874 217 LYGYDWTLPYKK------------GGKASTISPQQAINLAKRYG--AEIQYDEEAQSPFFRYVDEQGRRHEVWFEDARSL 282 (313)
T ss_pred ccccccccCCCC------------CcCccccCHHHHHHHHHHcC--CCeEECcccCCCcEEEEeCCCCEEEEEeCcHHHH
Confidence 999999865411 11246788999999998888 89999999999976 4 2 3589999999999
Q ss_pred HHHHHHHHHcCCceEEEEeccCCCc
Q 043488 333 RVKVAYAKEKKLRGYYVWEVSSDHY 357 (409)
Q Consensus 333 ~~K~~~~~~~glgGi~iW~l~~Dd~ 357 (409)
+.|++|++++||||+++|++++||.
T Consensus 283 ~~K~~~~~~~~lgGv~iW~lg~dD~ 307 (313)
T cd02874 283 QAKFELAKEYGLRGVSYWRLGLEDP 307 (313)
T ss_pred HHHHHHHHHcCCCeEEEEECCCCCc
Confidence 9999999999999999999999994
No 13
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=4.2e-48 Score=362.43 Aligned_cols=247 Identities=26% Similarity=0.503 Sum_probs=208.9
Q ss_pred EEEEEeCCCCCC--CcCCCCCCccEEEEEEEEEeCCCeEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcc
Q 043488 28 RAGYWDSDDGFP--VSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSS 105 (409)
Q Consensus 28 v~gY~~~~~~~~--~~~i~~~~~Thii~~f~~i~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~ 105 (409)
|+|||++|+... +++++.++||||+++|+.++++| .+...+. ...+..+++.+|+ +++||+++||||.. +.
T Consensus 1 vigyy~~w~~~~~~~~~~~~~~lThv~~~f~~i~~~G-~l~~~~~-~~~~~~~~~~~~~--~~~kvl~sigg~~~---~~ 73 (253)
T cd06545 1 VVGYLPNYDDLNALSPTIDFSKLTHINLAFANPDANG-TLNANPV-RSELNSVVNAAHA--HNVKILISLAGGSP---PE 73 (253)
T ss_pred CEEEeCCcccccCCcccCChhhCCeEEEEEEEECCCC-eEEecCc-HHHHHHHHHHHHh--CCCEEEEEEcCCCC---Cc
Confidence 589999977654 78999999999999999999886 5555432 2344555555554 48999999999875 34
Q ss_pred cccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCc
Q 043488 106 YSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSP 185 (409)
Q Consensus 106 ~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~~ 185 (409)
+..++.+++.|++|++++++++++|+|||||||||+|... +++|..|+++||+++++.+ +.||+++++.+
T Consensus 74 ~~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~--~~~~~~fv~~Lr~~l~~~~--------~~lt~av~~~~ 143 (253)
T cd06545 74 FTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVT--FGDYLVFIRALYAALKKEG--------KLLTAAVSSWN 143 (253)
T ss_pred chhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCcc--HhHHHHHHHHHHHHHhhcC--------cEEEEEccCcc
Confidence 6779999999999999999999999999999999999862 7899999999999998764 48899887543
Q ss_pred ccccCCCChhHHhccccEEEeeccCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHcCC-CCCceEEecceeeEEee
Q 043488 186 LSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYDPNSVSNTEYGITEWIEEGL-SADKLVLCLPFYGYAWT 264 (409)
Q Consensus 186 ~~~~~~y~~~~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~-p~~KivlGlp~yG~~~~ 264 (409)
.. .+ ..++.+++|+|+||+||++|+|....+++++|+. +++.++++|.+.|+ |++||+||+|+||+.|+
T Consensus 144 ~~---~~-~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~------~~~~~v~~~~~~g~ip~~KlvlGlp~YG~~w~ 213 (253)
T cd06545 144 GG---AV-SDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYD------DAVNDLNYWNERGLASKDKLVLGLPFYGYGFY 213 (253)
T ss_pred cc---cc-cHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchH------hHHHHHHHHHHcCCCCHHHEEEEeCCcccccc
Confidence 21 13 3577899999999999999998777799999986 78999999999998 99999999999999883
Q ss_pred eccCCCCCCCCCccCCCCCCCCcccHHHHHHhhhcCCCCeEEEEeccceeEEEEeCcEEEEECCHHHHHHHHHHHHHcCC
Q 043488 265 LVKPEDNGIGAAATGPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVAYAKEKKL 344 (409)
Q Consensus 265 ~~~~~~~~~~~~~~g~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~ydd~~Sl~~K~~~~~~~gl 344 (409)
|+.+.+++.|+++++++ +
T Consensus 214 -------------------------------------------------------------~~~~~~~~~~~~~~~~~-~ 231 (253)
T cd06545 214 -------------------------------------------------------------YNGIPTIRNKVAFAKQN-Y 231 (253)
T ss_pred -------------------------------------------------------------CCCHHHHHHHHHHHHHh-c
Confidence 78888999999999999 9
Q ss_pred ceEEEEeccCCC--chhHHHH
Q 043488 345 RGYYVWEVSSDH--YWMLSQA 363 (409)
Q Consensus 345 gGi~iW~l~~Dd--~~~L~~a 363 (409)
||+|+|++++|. ..+|+++
T Consensus 232 gG~~~w~~~~d~~~~~~l~~~ 252 (253)
T cd06545 232 GGVMIWELSQDASGENSLLNA 252 (253)
T ss_pred CeEEEEeccCCCCCCcchhhc
Confidence 999999999997 3566554
No 14
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=2.2e-47 Score=365.32 Aligned_cols=289 Identities=13% Similarity=0.143 Sum_probs=228.7
Q ss_pred EEEEEEeCCCCCC--CcCCCCCCccEEEEEEEEEeCCCeEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCc
Q 043488 27 IRAGYWDSDDGFP--VSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLSIGGGNNPNYS 104 (409)
Q Consensus 27 ~v~gY~~~~~~~~--~~~i~~~~~Thii~~f~~i~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGG~~~~~~~ 104 (409)
+++|||.++.... ........+|||++.|+.+...++.+..... .. ....++.+|+++|.++++.+++|+.. +++
T Consensus 1 ~~l~~~~~w~~~s~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~~~d-~~-~~~~~~~~k~~~~~l~~~~~~~~~~~-~~~ 77 (298)
T cd06549 1 IALAFYTPWDDASFASLKRHAPRLDWLVPEWLNLTGPEGRIDVFVD-PQ-GVAIIAAAKAHPKVLPLVQNISGGAW-DGK 77 (298)
T ss_pred CeeEEEecCChhhHHHHHHhhccCCEEeceeEEEecCCCceeccCC-hH-HHHHHHHHHcCCceeEEEEecCCCCC-CHH
Confidence 3689999854433 3334567899999999999855456654322 22 22344567777788999999988765 456
Q ss_pred ccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecC
Q 043488 105 SYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYS 184 (409)
Q Consensus 105 ~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~ 184 (409)
.|+.++++++.|++|++++++++++|+|||||||||++.. +++++|+.|+++||++|++.+ +.|++++|+.
T Consensus 78 ~~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~-~d~~~~~~fl~eL~~~l~~~~--------~~lsv~v~~~ 148 (298)
T cd06549 78 NIARLLADPSARAKFIANIAAYLERNQADGIVLDFEELPA-DDLPKYVAFLSELRRRLPAQG--------KQLTVTVPAD 148 (298)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCh-hHHHHHHHHHHHHHHHhhhcC--------cEEEEEecCC
Confidence 7999999999999999999999999999999999999874 899999999999999999864 5899998865
Q ss_pred cccccCCCChhHHhccccEEEeeccCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHcCCCCCceEEecceeeEEee
Q 043488 185 PLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGYAWT 264 (409)
Q Consensus 185 ~~~~~~~y~~~~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~p~~KivlGlp~yG~~~~ 264 (409)
+ ..||++++.+++|+|+||+||+|+++ ..++|.+|.. +++..+++. ..|+|++||+||||+||+.|+
T Consensus 149 ~----~~~d~~~l~~~~D~v~lMtYD~~~~~--~~~gp~a~~~------~~~~~~~~~-~~~vp~~KlvlGip~YG~~w~ 215 (298)
T cd06549 149 E----ADWNLKALARNADKLILMAYDEHYQG--GAPGPIASQD------WFESNLAQA-VKKLPPEKLIVALGSYGYDWT 215 (298)
T ss_pred C----CCCCHHHHHHhCCEEEEEEeccCCCC--CCCCCCCChh------hHHHHHHHH-HhCCCHHHEEEEecccCcccc
Confidence 3 24799999999999999999999874 3466766654 566667664 467999999999999999997
Q ss_pred eccCCCCCCCCCccCCCCCCCCcccHHHHHHhhhcCCCCeEEEEeccceeE-EEE-e---CcEEEEECCHHHHHHHHHHH
Q 043488 265 LVKPEDNGIGAAATGPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVN-YCS-I---GKIWFGFDDVEAVRVKVAYA 339 (409)
Q Consensus 265 ~~~~~~~~~~~~~~g~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~-y~~-~---~~~~i~ydd~~Sl~~K~~~~ 339 (409)
+..+ ...++..+...++.+.+ ....||++...+ |.| + ..|+|||||++|++.|++++
T Consensus 216 ~~~~----------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~h~Vw~~d~~Sl~~K~~~a 277 (298)
T cd06549 216 KGGN----------------TKAISSEAAWLLAAHAS--AAVKFDDKASNATYFFYDDEGVSHEVWMLDAVTLFNQLKAV 277 (298)
T ss_pred CCCC----------------CcccCHHHHHHHHHHcC--CcceecccccCCceEEEcCCCcEEEEEeccHHHHHHHHHHH
Confidence 6321 01244556656566666 778898877666 555 2 24899999999999999999
Q ss_pred HHcCCceEEEEeccCCCch
Q 043488 340 KEKKLRGYYVWEVSSDHYW 358 (409)
Q Consensus 340 ~~~glgGi~iW~l~~Dd~~ 358 (409)
+++||+|+++|++++||..
T Consensus 278 ~~~~l~Gva~W~lg~ed~~ 296 (298)
T cd06549 278 QRLGPAGVALWRLGSEDPG 296 (298)
T ss_pred HHcCCCcEEEEeccCCCCC
Confidence 9999999999999999854
No 15
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=6.7e-37 Score=279.00 Aligned_cols=172 Identities=27% Similarity=0.487 Sum_probs=140.9
Q ss_pred EEEEEeCCCCCC---CcCCCCCCccEEEEEEEEEeCCCeEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCc
Q 043488 28 RAGYWDSDDGFP---VSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLSIGGGNNPNYS 104 (409)
Q Consensus 28 v~gY~~~~~~~~---~~~i~~~~~Thii~~f~~i~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGG~~~~~~~ 104 (409)
++|||..+.... +..++.++||||+++|+.+++++......+.........++.+++++|++||++||||+.. ..
T Consensus 1 vv~y~~~w~~~~~~~~~~~~~~~~thvi~~f~~v~~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~kv~~sigg~~~--~~ 78 (210)
T cd00598 1 VICYYDGWSSGRGPDPTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEEPLKGALEELASKKPGLKVLISIGGWTD--SS 78 (210)
T ss_pred CEEEEccccccCCCChhhCCcccCCEEEEeeEEECCCCCEecccCcccHHHHHHHHHHHHhCCCCEEEEEEcCCCC--CC
Confidence 589999965554 4788999999999999999988755431222222333444568888899999999999986 34
Q ss_pred ccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcc--cHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEee
Q 043488 105 SYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSR--DKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVA 182 (409)
Q Consensus 105 ~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~--~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~ 182 (409)
.+ .++.+++.|++|++++++++++|+|||||||||+|.... ++.+|+.|+++||++|++++ ++||+++|
T Consensus 79 ~~-~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~--------~~ls~a~~ 149 (210)
T cd00598 79 PF-TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAAN--------YLLTIAVP 149 (210)
T ss_pred Cc-hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccC--------cEEEEEec
Confidence 44 789999999999999999999999999999999998633 48999999999999998753 69999999
Q ss_pred cCcccccCCCChhHHhccccEEEeeccC
Q 043488 183 YSPLSTAAAYPVDSIRQYLNWVHVITTE 210 (409)
Q Consensus 183 ~~~~~~~~~y~~~~l~~~vD~v~vm~YD 210 (409)
+.+......|++.++.+++|++++|+||
T Consensus 150 ~~~~~~~~~~~~~~l~~~vD~v~vm~Yd 177 (210)
T cd00598 150 ASYFDLGYAYDVPAIGDYVDFVNVMTYD 177 (210)
T ss_pred CChHHhhccCCHHHHHhhCCEEEEeeec
Confidence 7765544348999999999999999997
No 16
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=100.00 E-value=8.5e-35 Score=276.12 Aligned_cols=240 Identities=20% Similarity=0.310 Sum_probs=195.5
Q ss_pred CcEEEEEEcCCCCC----CCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHH
Q 043488 88 SITTLLSIGGGNNP----NYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVA 163 (409)
Q Consensus 88 ~~kvllsiGG~~~~----~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~ 163 (409)
+++.++.+...+.+ +.+..+.++.++..++++++++++.++.+|+.|+.||+|.... .|++.|..|++++|.+|+
T Consensus 160 ~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v~~-~DR~~yt~flR~~r~~l~ 238 (423)
T COG3858 160 KIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENVGP-GDRELYTDFLRQVRDALH 238 (423)
T ss_pred ccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhCCH-HHHHHHHHHHHHHHHHhc
Confidence 46666655433211 2344689999999999999999999999999999999999884 999999999999999999
Q ss_pred HHhhcCCCCceeEEEEEeecCcc-----cccCCCChhHHhccccEEEeeccCCCCCCCCCCCCCCCcCCCCCCCCcHHHH
Q 043488 164 LEARNNSSQSQLILTAKVAYSPL-----STAAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYDPNSVSNTEYG 238 (409)
Q Consensus 164 ~~~~~~~~~~~~~Ls~a~~~~~~-----~~~~~y~~~~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~~~~~~~~~ 238 (409)
+.| +.+++|+++... .+...||+..+++++|+|.+|+||.|.+| +.+|+.||.- +++..
T Consensus 239 ~~G--------~~~siAvaakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~g--G~PG~vA~i~------~vr~~ 302 (423)
T COG3858 239 SGG--------YTVSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSG--GPPGPVASIG------WVRKV 302 (423)
T ss_pred cCC--------eEEEEEecCCCCCCcCccccchhhhhhhceeeeEEEEEEeccCcCC--CCCCcccCch------hHhhh
Confidence 886 689999986543 24445899999999999999999999875 6789999886 78888
Q ss_pred HHHHHHcCCCCCceEEecceeeEEeeeccCCCCCCCCCccCCCCCCCCcccHHHHHHhhhcCCCCeEEEEeccceeEEEE
Q 043488 239 ITEWIEEGLSADKLVLCLPFYGYAWTLVKPEDNGIGAAATGPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCS 318 (409)
Q Consensus 239 v~~~~~~g~p~~KivlGlp~yG~~~~~~~~~~~~~~~~~~g~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~ 318 (409)
+++.+.. +|++||+||+|+||++|.+..+.. |..+ .. ++.++-..+.+..+ +++.||..++.||++
T Consensus 303 ieya~T~-iP~~Kv~mGip~YGYDW~~~y~~~---g~~~-------~a-~~~~~~i~ia~~y~--A~Iq~D~~~qsp~F~ 368 (423)
T COG3858 303 IEYALTV-IPAEKVMMGIPLYGYDWTLPYDPL---GYLA-------RA-ISPDEAIDIANRYN--ATIQYDATSQSPFFY 368 (423)
T ss_pred hhhhhee-cchHHeEEccccccccccCCCCCC---ccee-------ee-cCcchhhhhhcccC--CccCcCccccCceEE
Confidence 8887775 999999999999999998644221 1101 11 44445444455555 899999999999887
Q ss_pred ----eC-cEEEEECCHHHHHHHHHHHHHcCCceEEEEeccCCCch
Q 043488 319 ----IG-KIWFGFDDVEAVRVKVAYAKEKKLRGYYVWEVSSDHYW 358 (409)
Q Consensus 319 ----~~-~~~i~ydd~~Sl~~K~~~~~~~glgGi~iW~l~~Dd~~ 358 (409)
.+ .|++||||.+|++.|.+++|++||.||++|.|+++|..
T Consensus 369 y~D~eg~~h~VWfeD~~s~~~k~~lik~ygl~GVs~W~Lg~e~p~ 413 (423)
T COG3858 369 YVDKEGRYHEVWFEDARSFQTKLDLIKEYGLRGVSYWVLGQEDPR 413 (423)
T ss_pred EEcCCCceEEEEcCchHHHHHHHHHHHHcCCceEEEEEecCcchh
Confidence 34 79999999999999999999999999999999999943
No 17
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=100.00 E-value=1.6e-33 Score=261.32 Aligned_cols=203 Identities=15% Similarity=0.156 Sum_probs=143.1
Q ss_pred CCCCCcCCCCCC--ccEEEEEEEE-EeCC----CeEEecCCcch-hHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccc
Q 043488 36 DGFPVSDVNSAL--FTHLMCGFAD-VNST----SYELSLSPSDE-KQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSSYS 107 (409)
Q Consensus 36 ~~~~~~~i~~~~--~Thii~~f~~-i~~~----~~~~~~~~~~~-~~~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~~ 107 (409)
....++++|.+. ||||+|+|+. .+.. ++.....+... ..+..+ ..+|+++|++|||+|||||+...+..+.
T Consensus 11 ~~~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lK~~~p~lKvllSiGG~~~~~~~~~~ 89 (253)
T cd06544 11 NGVTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPYWDTENLTPEAV-KSIKAQHPNVKVVISIGGRGVQNNPTPF 89 (253)
T ss_pred CCccccccCCCCCeeEEEEEEeeeecccccCCCCCccccccCccccCHHHH-HHHHHhCCCcEEEEEeCCCCCCCCcccc
Confidence 345788999988 9999999993 3331 33444433322 234455 4799999999999999999871112222
Q ss_pred cccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCccc
Q 043488 108 SMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLS 187 (409)
Q Consensus 108 ~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~~~~ 187 (409)
...+.+..|++|++++++++++|||||||||||+|. .++.+|+.|+++||++|++++ +++.+++.+....
T Consensus 90 ~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~--~d~~~f~~ll~~l~~~l~~~~--------~lt~a~vap~~~~ 159 (253)
T cd06544 90 DPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP--ADPDTFVECIGQLITELKNNG--------VIKVASIAPSEDA 159 (253)
T ss_pred CchhhhhHHHHHHHHHHHHHHHhCCCceeeecccCC--cCHHHHHHHHHHHHHHhhhcC--------CeEEEEecCCccc
Confidence 333344456677999999999999999999999995 578999999999999998753 2333333332222
Q ss_pred ccCCCChhHHhccccEEEeeccCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHcCCCCCceEEecceeeEEe
Q 043488 188 TAAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGYAW 263 (409)
Q Consensus 188 ~~~~y~~~~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~p~~KivlGlp~yG~~~ 263 (409)
. ..+.+..+.+++|+|++|+||+++.+.. ...+ ......+.|. .++|++||++|+|.+++.|
T Consensus 160 ~-~~~y~~~~~~~~d~id~~~~qfy~~~~~---~~~~---------~~~~~~~~~~-~~~p~~Kv~lGl~a~~~~~ 221 (253)
T cd06544 160 E-QSHYLALYNAYGDYIDYVNYQFYNYGVP---TTVA---------KYVEFYDEVA-NNYPGKKVLASFSTDGEDG 221 (253)
T ss_pred c-ccccHHHHHHhhCceeEEEhhhhCCCCC---CCHH---------HHHHHHHHHH-hCCCcccEEEEEecCCCcc
Confidence 1 2345788899999999999999986421 1111 2223445554 4699999999999999876
No 18
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=100.00 E-value=7.3e-33 Score=258.41 Aligned_cols=198 Identities=14% Similarity=0.226 Sum_probs=144.5
Q ss_pred EEEEEEeCCCC--------CCCcCCCCCCccEEEEEEEEEeCCCeEEecCCc--chhHHHHHHHHHH-hhCCCcEEEEEE
Q 043488 27 IRAGYWDSDDG--------FPVSDVNSALFTHLMCGFADVNSTSYELSLSPS--DEKQFSNFTDTVK-IKNPSITTLLSI 95 (409)
Q Consensus 27 ~v~gY~~~~~~--------~~~~~i~~~~~Thii~~f~~i~~~~~~~~~~~~--~~~~~~~~~~~lk-~~~p~~kvllsi 95 (409)
++||||..++. +++..++.++||||+|+|+.++++| .+...+. +...+..+.+.++ .+++++|||+||
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G-~l~~~d~~~~~~~~~~~~~~i~~~~~~g~KVllSi 79 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDG-NIHLNDHPPDHPRFTTLWTELAILQSSGVKVMGML 79 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCC-eEEECCCCCCcchhhHHHHHHHHHHhCCCEEEEEE
Confidence 57999988321 2233567789999999999999875 5665543 1112222222222 245799999999
Q ss_pred cCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHhhcCCCCcee
Q 043488 96 GGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQL 175 (409)
Q Consensus 96 GG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~ 175 (409)
|||.. ..|+.++++++.|++|++++++++++|+|||||||||+|.. ..+|..|+++||+++++ ++
T Consensus 80 GG~~~---~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~---~~~~~~ll~~Lr~~~~~---------~~ 144 (256)
T cd06546 80 GGAAP---GSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMS---LDGIIRLIDRLRSDFGP---------DF 144 (256)
T ss_pred CCCCC---CCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCCC---HhHHHHHHHHHHHHhCC---------Cc
Confidence 99975 34888888999999999999999999999999999999853 56899999999999853 27
Q ss_pred EEEEEeecCc---c-cccCCCChhHHh----ccccEEEeeccCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHcCC
Q 043488 176 ILTAKVAYSP---L-STAAAYPVDSIR----QYLNWVHVITTEYSSPTWQNFTGAHAALYDPNSVSNTEYGITEWIEEGL 247 (409)
Q Consensus 176 ~Ls~a~~~~~---~-~~~~~y~~~~l~----~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~ 247 (409)
+||+++++.. . .....+++.++. .++||+|+|.||.+|... +. .....|...++
T Consensus 145 ~lT~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~~-----------------~~-~~~~~~~~~~~ 206 (256)
T cd06546 145 IITLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSMS-----------------SP-SDYDAIVAQGW 206 (256)
T ss_pred EEEECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCcc-----------------CH-HHHHHHHHcCC
Confidence 8999876431 1 111235676665 599999999999765411 11 22345666789
Q ss_pred CCCceEEecce
Q 043488 248 SADKLVLCLPF 258 (409)
Q Consensus 248 p~~KivlGlp~ 258 (409)
|++||++|+|.
T Consensus 207 ~~~Kv~iGlpa 217 (256)
T cd06546 207 DPERIVIGLLT 217 (256)
T ss_pred CcccEEEEEec
Confidence 99999999985
No 19
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.98 E-value=8.1e-31 Score=252.36 Aligned_cols=211 Identities=23% Similarity=0.332 Sum_probs=146.6
Q ss_pred cEEEEEEeCCCCCC-----CcCCCCCCccEEEEEEEEEeCCCe-EEe------cCCcchhHHHHHHHHHHhhCCCcEEEE
Q 043488 26 LIRAGYWDSDDGFP-----VSDVNSALFTHLMCGFADVNSTSY-ELS------LSPSDEKQFSNFTDTVKIKNPSITTLL 93 (409)
Q Consensus 26 ~~v~gY~~~~~~~~-----~~~i~~~~~Thii~~f~~i~~~~~-~~~------~~~~~~~~~~~~~~~lk~~~p~~kvll 93 (409)
++++|||+.|.... +.+...+.||||+++|+.+++++. .+. ........+.+.++.+|++ ++|||+
T Consensus 1 k~~vgY~~~w~~~~~~~~~~~~~~~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~--G~KVll 78 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGRQDLDDVPSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQAK--GKKVLI 78 (312)
T ss_pred CeEEEecCcccCCCCCCCCCcccCCCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHHC--CCEEEE
Confidence 57899999854432 123344899999999999987642 222 1112234445555566664 799999
Q ss_pred EEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCc----ccHhhHHHHHHHHHHHHHHHhhcC
Q 043488 94 SIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTS----RDKYNIGILFKEWRAAVALEARNN 169 (409)
Q Consensus 94 siGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~----~~~~~~~~ll~~Lr~~l~~~~~~~ 169 (409)
||||+.. + ..+.+++.|++|++++++++++|+|||||||||+|... .++.+|..|+++||+++++
T Consensus 79 SiGG~~~--~----~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~----- 147 (312)
T cd02871 79 SIGGANG--H----VDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYGP----- 147 (312)
T ss_pred EEeCCCC--c----cccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCC-----
Confidence 9999875 2 23678899999999999999999999999999998753 3678999999999998864
Q ss_pred CCCceeEEEEEeecCccc--------ccCCC--ChhHHhccccEEEeeccCCCCCCCCCCCCCCCcCCCCCCCCcHHHHH
Q 043488 170 SSQSQLILTAKVAYSPLS--------TAAAY--PVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYDPNSVSNTEYGI 239 (409)
Q Consensus 170 ~~~~~~~Ls~a~~~~~~~--------~~~~y--~~~~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~~~~~~~~~v 239 (409)
+++||+++.+.... ....| .++++.+++||+|||+||.++.+. ....-+. .+..+...++
T Consensus 148 ----~~~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~~-----~~~~~~~-~~~~~~~~~~ 217 (312)
T cd02871 148 ----NFILTMAPETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMGG-----CDGQSYS-QGTADFLVAL 217 (312)
T ss_pred ----CeEEEECCCcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCccc-----ccccCCc-cchhHHHHHH
Confidence 28999997543211 11124 367788899999999999876531 1111111 1111223333
Q ss_pred HHHHHcC-----------CCCCceEEeccee
Q 043488 240 TEWIEEG-----------LSADKLVLCLPFY 259 (409)
Q Consensus 240 ~~~~~~g-----------~p~~KivlGlp~y 259 (409)
..++.++ +|++||++|+|+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 218 ADMLLTGFPIAGNDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred HHHHHcCCCccCCcccccCChhhEEEeccCC
Confidence 3444445 8999999999974
No 20
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=99.96 E-value=3e-28 Score=221.39 Aligned_cols=293 Identities=14% Similarity=0.180 Sum_probs=227.2
Q ss_pred CcEEEEEEeC--CCCCCCcCCCCCCccEEEEEEEEEeCCCeEEecCCcchhHHHHHHHHHHhhCCCcEEEEEE--cCCCC
Q 043488 25 TLIRAGYWDS--DDGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLSI--GGGNN 100 (409)
Q Consensus 25 ~~~v~gY~~~--~~~~~~~~i~~~~~Thii~~f~~i~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsi--GG~~~ 100 (409)
+.-+.||.++ ..+|....+-.+++|||..-|+.+...|..+..... ...-..+++.+|+++++++++.-+ ..|.
T Consensus 78 ~~~vLayVTPWNs~Gydvakifaskft~iSPVW~ql~~qgs~~~v~G~-hdid~gwiralRk~~~~l~ivPR~~fd~~~- 155 (392)
T KOG2091|consen 78 GGTVLAYVTPWNSHGYDVAKIFASKFTYISPVWLQLKDQGSDVGVYGK-HDIDPGWIRALRKSGKDLHIVPRFYFDEFT- 155 (392)
T ss_pred CCceEEEecCcCccchhHHHHHhcccceecchheeehhcCcceEEeec-ccCChHHHHHHHHhCCCceeeceehhhhcc-
Confidence 3578999999 457899999999999999999999877644433322 112235667899999999988554 3444
Q ss_pred CCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEe-eeccCCcccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEE
Q 043488 101 PNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLS-WNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTA 179 (409)
Q Consensus 101 ~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiD-wE~p~~~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~ 179 (409)
+..+..++.+++.|++..+.++++++++||||+.++ |....+.-.......|++.|-+++++... ..+|++
T Consensus 156 --~~d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~i~d~~al~~v~hl~k~Lhkq~l------~~iLvv 227 (392)
T KOG2091|consen 156 --SADLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADVIADKDALELVEHLGKALHKQEL------QAILVV 227 (392)
T ss_pred --chHHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhe------EEEEEe
Confidence 477889999999999999999999999999999998 43222111112344678888888887654 345555
Q ss_pred EeecCcccccCC----CChhHHhccccEEEeeccCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHcCCCCCceEEe
Q 043488 180 KVAYSPLSTAAA----YPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLC 255 (409)
Q Consensus 180 a~~~~~~~~~~~----y~~~~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~p~~KivlG 255 (409)
.++..+...+.. -+++.+.+.+|.+.+|||||.+. ..+|++||+. +++.++....-...-+.||.+|
T Consensus 228 Pp~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~---~~pg~nap~~------wi~~~l~~l~~~s~~r~KiLlG 298 (392)
T KOG2091|consen 228 PPVIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLV---QGPGPNAPLE------WIRHCLHHLGGSSAKRPKILLG 298 (392)
T ss_pred CCCCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccc---cCCCCCCCHH------HHHHHHHHhCCccccccceeEe
Confidence 443333333322 26788999999999999999874 5699999998 8999988776555667899999
Q ss_pred cceeeEEeeeccCCCCCCCCCccCCCCCCCCcccHHHHHHhhhcCCCCeEEEEeccceeEEE-E----eCcEEEEECCHH
Q 043488 256 LPFYGYAWTLVKPEDNGIGAAATGPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYC-S----IGKIWFGFDDVE 330 (409)
Q Consensus 256 lp~yG~~~~~~~~~~~~~~~~~~g~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~-~----~~~~~i~ydd~~ 330 (409)
+.|||+.|...+ ..+.++-++-..+++... ..-.||+++..+++ | ++++.|.|++..
T Consensus 299 lNFYG~d~~~gd----------------g~~~IT~~rYL~lLk~~k--~~~~~Dees~EH~f~~k~n~~gkhivfyPTL~ 360 (392)
T KOG2091|consen 299 LNFYGNDFNLGD----------------GGEAITAKRYLQLLKGEK--SVFKFDEESKEHFFEYKRNDDGKHIVFYPTLT 360 (392)
T ss_pred eeccccccccCC----------------CCCceeHHHHHHHHhccC--cceeeccccchhheeeeccCCCceEEEecchH
Confidence 999999996411 135678888888888877 78999999988865 4 468999999999
Q ss_pred HHHHHHHHHHHcCCceEEEEeccCC
Q 043488 331 AVRVKVAYAKEKKLRGYYVWEVSSD 355 (409)
Q Consensus 331 Sl~~K~~~~~~~glgGi~iW~l~~D 355 (409)
|+..++++|++.|. ||+||++||-
T Consensus 361 Sl~~Ri~lA~~~gv-gISIWe~GqG 384 (392)
T KOG2091|consen 361 SLELRIELARELGV-GISIWEYGQG 384 (392)
T ss_pred hHHHHHHHHHHhCC-ceEeeeccCc
Confidence 99999999999998 9999999986
No 21
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.93 E-value=5.7e-25 Score=206.41 Aligned_cols=196 Identities=16% Similarity=0.129 Sum_probs=138.3
Q ss_pred cEEEEEEeCCCC------CCCcCCCCCCccEEEEEEEEEeCCCeEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCC
Q 043488 26 LIRAGYWDSDDG------FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLSIGGGN 99 (409)
Q Consensus 26 ~~v~gY~~~~~~------~~~~~i~~~~~Thii~~f~~i~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGG~~ 99 (409)
++.+|||..|.. ..+.++| +.+++|++....++.++... .........+.++.+|++ |+||+++|||+.
T Consensus 1 ~~~~~y~~~~~~~~~~~~~~l~~~p-ds~D~v~lf~~~~~~~~~~~--~~~~~~~~~~~i~~l~~k--G~KVl~sigg~~ 75 (255)
T cd06542 1 PISFGYFEVWDDKGASLQESLLNLP-DSVDMVSLFAANINLDAATA--VQFLLTNKETYIRPLQAK--GTKVLLSILGNH 75 (255)
T ss_pred CeEEEEEEecCCcCcccccccccCC-CcceEEEEcccccCcccccc--hhhhhHHHHHHHHHHhhC--CCEEEEEECCCC
Confidence 467899988764 3444554 57888888544444322100 011123334444555554 899999999988
Q ss_pred CCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCC------cccHhhHHHHHHHHHHHHHHHhhcCCCCc
Q 043488 100 NPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANT------SRDKYNIGILFKEWRAAVALEARNNSSQS 173 (409)
Q Consensus 100 ~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~------~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~ 173 (409)
. ...| ....+++.|++|++++++++++|||||||||||++.. +.++.+|..|+++||+.+++.+
T Consensus 76 ~--~~~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~~~------- 145 (255)
T cd06542 76 L--GAGF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGPTD------- 145 (255)
T ss_pred C--CCCc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCcCC-------
Confidence 6 4444 3456789999999999999999999999999999874 2377899999999999997633
Q ss_pred eeEEEEEeecCcccccCCCChhHHhccccEEEeeccCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHcCCCCCceE
Q 043488 174 QLILTAKVAYSPLSTAAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLV 253 (409)
Q Consensus 174 ~~~Ls~a~~~~~~~~~~~y~~~~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~p~~Kiv 253 (409)
++|++++++..... +.+++.+++||+++|+||..+... .. + ..-...|+|++|++
T Consensus 146 -kllt~~~~~~~~~~----~~~~~~~~vDyv~~~~y~~~~~~~----~~----~------------~~~~~~g~~~~k~i 200 (255)
T cd06542 146 -KLLTIDGYGQALSN----DGEEVSPYVDYVIYQYYGSSSSST----QR----N------------WNTNSPKIPPEKMV 200 (255)
T ss_pred -cEEEEEecCCchhc----CHHHHHHhCCEEEeeccCCCCccC----Cc----c------------cccccCCCCHHHce
Confidence 58899877543221 578999999999999998543310 00 0 01124689999999
Q ss_pred EecceeeE
Q 043488 254 LCLPFYGY 261 (409)
Q Consensus 254 lGlp~yG~ 261 (409)
+|+++++.
T Consensus 201 ~~~~~~~~ 208 (255)
T cd06542 201 YTESFEEE 208 (255)
T ss_pred eeeeeecc
Confidence 99999874
No 22
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.93 E-value=4.4e-24 Score=200.93 Aligned_cols=240 Identities=21% Similarity=0.235 Sum_probs=162.6
Q ss_pred EEEEEEeCCC--CCCCcCCCCCCccEEEEEEEEEeCCCeE--EecCCcch-------hHHHHHHHHHHhhCCCcEEEEEE
Q 043488 27 IRAGYWDSDD--GFPVSDVNSALFTHLMCGFADVNSTSYE--LSLSPSDE-------KQFSNFTDTVKIKNPSITTLLSI 95 (409)
Q Consensus 27 ~v~gY~~~~~--~~~~~~i~~~~~Thii~~f~~i~~~~~~--~~~~~~~~-------~~~~~~~~~lk~~~p~~kvllsi 95 (409)
.++.||.... ....+.++...++-|+++|+..-++++. +.+.+... ..+.+-++.+++ +++||||||
T Consensus 2 ~v~vyWGq~~~~~~L~~~C~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~--~G~KVlLSI 79 (280)
T cd02877 2 NIAVYWGQNSDEGSLREYCDTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQS--KGKKVLLSI 79 (280)
T ss_pred CeEEECCCCCCCCCHHHHhCCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHH--CCCEEEEEc
Confidence 3678887632 2233345667899999999987765322 22222211 234444445555 489999999
Q ss_pred cCCCCCCCcccccccCChhHHHHHHHHHHHHH------------HHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHH
Q 043488 96 GGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIA------------RLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVA 163 (409)
Q Consensus 96 GG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l------------~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~ 163 (409)
|||.. +..+ .+++.|++|++++.++. .+++|||||||||+|.. .+|..|+++||+.++
T Consensus 80 GG~~~--~~~~----~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~----~~~~~l~~~LR~~~~ 149 (280)
T cd02877 80 GGAGG--SYSL----SSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP----ENYDALAKRLRSLFA 149 (280)
T ss_pred cCCCC--CcCC----CCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCc----cCHHHHHHHHHHHhh
Confidence 99986 3333 68899999999998776 25779999999999874 689999999999997
Q ss_pred HHhhcCCCCceeEEEEEeecCcccccCCCChhHHh-ccccEEEeeccCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHH
Q 043488 164 LEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIR-QYLNWVHVITTEYSSPTWQNFTGAHAALYDPNSVSNTEYGITEW 242 (409)
Q Consensus 164 ~~~~~~~~~~~~~Ls~a~~~~~~~~~~~y~~~~l~-~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~ 242 (409)
+.. ..+++||+|+++... ..+....+. .++|+++||+||..+.- ...+.++ ......+.|
T Consensus 150 ~~~-----~~~~~LTaAPq~~~~---d~~~~~~i~~~~~D~i~vqfYn~~~c~--~~~~~~~---------~~~~~~~~w 210 (280)
T cd02877 150 SDP-----SKKYYLTAAPQCPYP---DASLGDAIATGLFDFIFVQFYNNPCCS--YASGNAS---------GFNFNWDTW 210 (280)
T ss_pred ccc-----CCceEEEeccccCCc---chhHHHHHccCccCEEEEEEecCcccc--ccccccc---------hhhhHHHHH
Confidence 641 115999999776321 123344555 48999999999975431 0011111 234556777
Q ss_pred HHcCCCC---CceEEecceeeEEeeeccCCCCCCCCCccCCCCCCCCcccHHHHHHhhhcCCCCeEEEEeccceeEEEEe
Q 043488 243 IEEGLSA---DKLVLCLPFYGYAWTLVKPEDNGIGAAATGPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSI 319 (409)
Q Consensus 243 ~~~g~p~---~KivlGlp~yG~~~~~~~~~~~~~~~~~~g~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~ 319 (409)
... ++. .||+||+|..-.. .+ .|
T Consensus 211 ~~~-~~~~~~~kv~lGlpas~~a---------------a~--------------------~G------------------ 236 (280)
T cd02877 211 TSW-AKATSNAKVFLGLPASPEA---------------AG--------------------SG------------------ 236 (280)
T ss_pred HHh-cccCCCceEEEecccCCCC---------------CC--------------------CC------------------
Confidence 765 565 8999999876421 00 23
Q ss_pred CcEEEEECCHHHHHHHHHHHHHc--CCceEEEEeccCCCc
Q 043488 320 GKIWFGFDDVEAVRVKVAYAKEK--KLRGYYVWEVSSDHY 357 (409)
Q Consensus 320 ~~~~i~ydd~~Sl~~K~~~~~~~--glgGi~iW~l~~Dd~ 357 (409)
|-++..+..-+..++++ .+||||+|+..+|..
T Consensus 237 ------yv~p~~l~~~v~~~~~~~~~fGGvM~Wd~~~~~~ 270 (280)
T cd02877 237 ------YVDPSELASLVLPVKQKSPNFGGVMLWDASQDKQ 270 (280)
T ss_pred ------ccCHHHHHHHHHHHhhcCCCCcEEEEEhHhhccC
Confidence 77777787777655543 599999999999875
No 23
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.87 E-value=3.7e-21 Score=182.30 Aligned_cols=151 Identities=14% Similarity=0.159 Sum_probs=113.0
Q ss_pred CCCCccEEEEEEEEEeCCCeEEecCCc---c-hhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHH
Q 043488 44 NSALFTHLMCGFADVNSTSYELSLSPS---D-EKQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYF 119 (409)
Q Consensus 44 ~~~~~Thii~~f~~i~~~~~~~~~~~~---~-~~~~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~f 119 (409)
....|+|++++|+....+ ++...... + ...+..-++.+|++ ++||++|+|||.. ..+ ..+...|++|
T Consensus 22 ~~~g~~~v~lAFi~~~~~-~~~~w~g~~~~~~~~~~~~~i~~lk~~--G~kViiS~GG~~g---~~~---~~~~~~~~~~ 92 (294)
T cd06543 22 AATGVKAFTLAFIVASGG-CKPAWGGSYPLDQGGWIKSDIAALRAA--GGDVIVSFGGASG---TPL---ATSCTSADQL 92 (294)
T ss_pred HHcCCCEEEEEEEEcCCC-CcccCCCCCCcccchhHHHHHHHHHHc--CCeEEEEecCCCC---Ccc---ccCcccHHHH
Confidence 346899999999988744 34443322 1 23334444578877 5899999999986 223 3367899999
Q ss_pred HHHHHHHHHHcCCCeEEEeeeccCCcccH---hhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCccccc-CCCChh
Q 043488 120 IDSSIKIARLYGFQGLDLSWNQANTSRDK---YNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTA-AAYPVD 195 (409)
Q Consensus 120 i~sii~~l~~~~~DGIdiDwE~p~~~~~~---~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~~~~~~-~~y~~~ 195 (409)
++++.+++++|+|||||||||++.. .++ +++..+|++|+++++ ++.|++++|..|.-.. .++++-
T Consensus 93 ~~a~~~~i~~y~~dgiDfDiE~~~~-~d~~~~~~~~~al~~Lq~~~p----------~l~vs~Tlp~~p~gl~~~g~~~l 161 (294)
T cd06543 93 AAAYQKVIDAYGLTHLDFDIEGGAL-TDTAAIDRRAQALALLQKEYP----------DLKISFTLPVLPTGLTPDGLNVL 161 (294)
T ss_pred HHHHHHHHHHhCCCeEEEeccCCcc-ccchhHHHHHHHHHHHHHHCC----------CcEEEEecCCCCCCCChhHHHHH
Confidence 9999999999999999999999874 454 678888888877663 3689999887665332 346666
Q ss_pred HHhc----cccEEEeeccCCCCC
Q 043488 196 SIRQ----YLNWVHVITTEYSSP 214 (409)
Q Consensus 196 ~l~~----~vD~v~vm~YD~~~~ 214 (409)
+.++ .+|+||||+|||+++
T Consensus 162 ~~a~~~Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 162 EAAAANGVDLDTVNIMTMDYGSS 184 (294)
T ss_pred HHHHHcCCCcceeeeeeecCCCC
Confidence 7777 899999999999864
No 24
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=1.4e-16 Score=141.48 Aligned_cols=179 Identities=16% Similarity=0.320 Sum_probs=115.4
Q ss_pred cccCCcEEEEEEeCCCC-----C---CCcCCCC----CCccEEEEEEEEEeCCCeEEecCCcchhHHHHHHHHHHhhCCC
Q 043488 21 ARAQTLIRAGYWDSDDG-----F---PVSDVNS----ALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPS 88 (409)
Q Consensus 21 ~~~~~~~v~gY~~~~~~-----~---~~~~i~~----~~~Thii~~f~~i~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~ 88 (409)
+...+++.+|||.+|.. | ...+|.+ ..+..+-.+|+.-..+=.+..+-......|+.-+..|.++ +
T Consensus 21 ~~~~~KvLvGyWHnw~sgaaDgyq~gs~adial~d~~~~ynvv~V~Fmk~~g~iptf~P~~~~daeFr~~v~aLnae--G 98 (332)
T COG3469 21 PDISNKVLVGYWHNWKSGAADGYQQGSSADIALADTPRNYNVVTVSFMKGAGDIPTFKPYNDPDAEFRAQVGALNAE--G 98 (332)
T ss_pred cccccceEEEeeecccccccccccccceeeeEeccCCcccceEEEEEeecCCCCcccCcCCCCHHHHHHHHHHhhcc--C
Confidence 35567799999998321 1 2222222 3355566666654332111111111223444433444444 7
Q ss_pred cEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCC--cccHhhHHHHHHHHHHHHHHHh
Q 043488 89 ITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANT--SRDKYNIGILFKEWRAAVALEA 166 (409)
Q Consensus 89 ~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~--~~~~~~~~~ll~~Lr~~l~~~~ 166 (409)
.-|+||+||... .. -....+.++|+++|++++++|||||+|||.|+... .+.+.-..+.+|.+|+..+..+
T Consensus 99 kavllsLGGAdg----hI---eL~~~qE~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~hyk~~G 171 (332)
T COG3469 99 KAVLLSLGGADG----HI---ELKAGQEQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYKNQG 171 (332)
T ss_pred cEEEEEccCccc----eE---EeccchHHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHHHHhcC
Confidence 889999999654 12 12234468999999999999999999999997653 1334456789999999888877
Q ss_pred hcCCCCceeEEEEEeecCcccccCCC--ChhHHhccccEEEeeccCCCCC
Q 043488 167 RNNSSQSQLILTAKVAYSPLSTAAAY--PVDSIRQYLNWVHVITTEYSSP 214 (409)
Q Consensus 167 ~~~~~~~~~~Ls~a~~~~~~~~~~~y--~~~~l~~~vD~v~vm~YD~~~~ 214 (409)
+ ++.||+++..+.-.....| -+.++..+.|+++.+-|+..|.
T Consensus 172 k------~f~itMAPEfPYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGd 215 (332)
T COG3469 172 K------NFFITMAPEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGD 215 (332)
T ss_pred C------ceEEEecCCCceecCCcccchHHHHHhhHHhhhhHHHhcCCCC
Confidence 7 7999998653322222234 3678899999999999987654
No 25
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=99.60 E-value=3.6e-14 Score=132.76 Aligned_cols=227 Identities=18% Similarity=0.157 Sum_probs=139.2
Q ss_pred CchhhHHHH-HHHHHHhccCCcccCCcEEEEEEeCC----CCCCCcCCCCCCccEEEEEEEEEeCCCeEEecC------C
Q 043488 1 MASKIIILV-LYIFIFSESLPARAQTLIRAGYWDSD----DGFPVSDVNSALFTHLMCGFADVNSTSYELSLS------P 69 (409)
Q Consensus 1 M~~~~~~~~-l~~~~~~~~~~~~~~~~~v~gY~~~~----~~~~~~~i~~~~~Thii~~f~~i~~~~~~~~~~------~ 69 (409)
|..+.++++ ++++.+.+.....+.+..+.+||..+ +.....-+....+..++++|+.--+.++...+. +
T Consensus 1 M~L~~~illF~~F~~l~lsk~~~~~~t~IA~YWGQN~aG~q~~Ls~yC~~~~yd~~~lsFL~~F~~~~Tp~LNfAn~Csd 80 (568)
T KOG4701|consen 1 MRLISSLLLFVYFARLALSKLNLTNQTAIAGYWGQNLAGDQKRLSSYCQNTTYDAIILSFLIDFNVDGTPVLNFANLCSD 80 (568)
T ss_pred CcHHHHHHHHHHHHHccccccccccccceEEEeccccccchhhhhhhhccCccceeeeehhhhcCCCCCceeehhcccCc
Confidence 665544433 33333333455566677889999772 222333456677888999888644433332221 1
Q ss_pred cc------hhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHc----------CCC
Q 043488 70 SD------EKQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLY----------GFQ 133 (409)
Q Consensus 70 ~~------~~~~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~----------~~D 133 (409)
.+ -..+..-++.++.+ |+||||++||..+ .-.+.+.+..+.|++.+.+....- -+|
T Consensus 81 ~~~~~l~~CTqi~~di~~CQS~--GiKVlLSLGG~~G------nYs~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvD 152 (568)
T KOG4701|consen 81 SDTFSLKKCTQIETDIQVCQSN--GIKVLLSLGGYNG------NYSLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVD 152 (568)
T ss_pred cccccccccchhhhHHHHHHhc--CeEEEEeccCccc------ceeeccchhHHHHHHHHHHHhcCCccccCcccchhcc
Confidence 11 11233334445444 8999999999765 234678888899999998877431 289
Q ss_pred eEEEeeeccCCcccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCcccccCCCChhHH-hccccEEEeeccCCC
Q 043488 134 GLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSI-RQYLNWVHVITTEYS 212 (409)
Q Consensus 134 GIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~~~~~~~~y~~~~l-~~~vD~v~vm~YD~~ 212 (409)
|+|||.|. .....|.+|.++||+.|...++ +|.|+.++.|+......+ +.| .+..||+.|+.|+-.
T Consensus 153 GfDF~IE~----g~~~~ysaLA~~L~~~Fa~~~r------~yYLsaAPQCP~PD~~~G---~aL~~~~fDf~~IQFYNN~ 219 (568)
T KOG4701|consen 153 GFDFEIEK----GTNTAYSALAKRLLEIFASDPR------RYYLSAAPQCPVPDHTLG---KALSENSFDFLSIQFYNNS 219 (568)
T ss_pred ceeeeeec----CCcchHHHHHHHHHHHHccCCc------eEEeccCCCCCCCchhhh---hhhhccccceEEEEeecCC
Confidence 99999994 3446788999999999987765 699999988753322211 222 245899999999753
Q ss_pred CCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHcCCCCCc---eEEecceee
Q 043488 213 SPTWQNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADK---LVLCLPFYG 260 (409)
Q Consensus 213 ~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~p~~K---ivlGlp~yG 260 (409)
... .-+++.+...| +...|.. .+.++| ++||+|...
T Consensus 220 ~CS----------~SsG~~Q~~fD-sW~~ya~-~~a~nKn~~lFLGLPg~~ 258 (568)
T KOG4701|consen 220 TCS----------GSSGSRQSTFD-AWVEYAE-DSAYNKNTSLFLGLPGHQ 258 (568)
T ss_pred Ccc----------cccCcccccHH-HHHHHHh-hhcccccceEEeeccCCc
Confidence 221 00011111222 2223333 366777 999998644
No 26
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.40 E-value=3.2e-06 Score=82.10 Aligned_cols=157 Identities=9% Similarity=0.040 Sum_probs=104.0
Q ss_pred HHHHHHhhCCCcEEEEEEc-CCCCCCCcccccccCC-hhHHHHHHHHHHHHHHHcCCCeEEEeeeccC-CcccHhhHHHH
Q 043488 78 FTDTVKIKNPSITTLLSIG-GGNNPNYSSYSSMAGN-PSFRKYFIDSSIKIARLYGFQGLDLSWNQAN-TSRDKYNIGIL 154 (409)
Q Consensus 78 ~~~~lk~~~p~~kvllsiG-G~~~~~~~~~~~~~~~-~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~-~~~~~~~~~~l 154 (409)
.++.+|++ |+||+-.|- -|.. ..+....++.+ ++.+..+++.++++++.|||||+.||+|... .+.+.+++..|
T Consensus 51 ~idaAHkn--GV~Vlgti~~e~~~-~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F 127 (339)
T cd06547 51 WINAAHRN--GVPVLGTFIFEWTG-QVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAF 127 (339)
T ss_pred HHHHHHhc--CCeEEEEEEecCCC-chHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHH
Confidence 44445554 899997774 1211 24567788888 9999999999999999999999999999987 56789999999
Q ss_pred HHHHHHHHHHHhhcCCCCceeEEEE--Eeec-CcccccCC---CChhHHhccccEEEeeccCCCCCCCCCCCCCCCcCCC
Q 043488 155 FKEWRAAVALEARNNSSQSQLILTA--KVAY-SPLSTAAA---YPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYD 228 (409)
Q Consensus 155 l~~Lr~~l~~~~~~~~~~~~~~Ls~--a~~~-~~~~~~~~---y~~~~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl~~ 228 (409)
+++|+++++++.. +..+.- ++.. ..-.++.. .+. ..-+.+|-+.+ .|. |...
T Consensus 128 ~~~L~~~~~~~~~------~~~v~WYDs~t~~G~l~wQn~Ln~~N~-~ff~~~D~~Fl-NY~----W~~~---------- 185 (339)
T cd06547 128 LRYLKAKLHENVP------GSLVIWYDSMTEDGKLSWQNELNSKNK-PFFDVCDGIFL-NYW----WTEE---------- 185 (339)
T ss_pred HHHHHHHHhhcCC------CcEEEEEecCCCCCccchhhhhhHHHH-HHHhhhcceeE-ecC----CCcc----------
Confidence 9999999998533 122211 1111 11011111 122 22255664422 332 2211
Q ss_pred CCCCCcHHHHHHHHHHcCCCCCceEEecceeeEEee
Q 043488 229 PNSVSNTEYGITEWIEEGLSADKLVLCLPFYGYAWT 264 (409)
Q Consensus 229 ~~~~~~~~~~v~~~~~~g~p~~KivlGlp~yG~~~~ 264 (409)
..+.+++.....|..+.+|.+|+=..|+...
T Consensus 186 -----~l~~s~~~a~~~g~~~~dvy~GiDv~grg~~ 216 (339)
T cd06547 186 -----SLERSVQLAEGLGRSPYDVYVGVDVWGRGTK 216 (339)
T ss_pred -----hHHHHHHHHHHcCCCHhHEEEEEEEEcCCcc
Confidence 3555666677788999999999988887653
No 27
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.04 E-value=5.5e-05 Score=72.90 Aligned_cols=130 Identities=18% Similarity=0.191 Sum_probs=88.7
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCeEEEe-eeccC-----------------------Cccc-------HhhHHHHHHHHH
Q 043488 111 GNPSFRKYFIDSSIKIARLYGFQGLDLS-WNQAN-----------------------TSRD-------KYNIGILFKEWR 159 (409)
Q Consensus 111 ~~~~~r~~fi~sii~~l~~~~~DGIdiD-wE~p~-----------------------~~~~-------~~~~~~ll~~Lr 159 (409)
..|+.|+-.++-+.+++++|.+|||.|| .-+|. .+.| +++...|+++++
T Consensus 134 ~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~ 213 (311)
T PF02638_consen 134 GHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIY 213 (311)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 3578888899999999999999999999 34432 1233 567889999999
Q ss_pred HHHHHHhhcCCCCceeEEEEEeecCcccccCC--CChhHHh--ccccEEEeeccCCCCCCCCCCCCCCCcCCCCCCCCcH
Q 043488 160 AAVALEARNNSSQSQLILTAKVAYSPLSTAAA--YPVDSIR--QYLNWVHVITTEYSSPTWQNFTGAHAALYDPNSVSNT 235 (409)
Q Consensus 160 ~~l~~~~~~~~~~~~~~Ls~a~~~~~~~~~~~--y~~~~l~--~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~~~~~~ 235 (409)
+++++.++ ...+++++.+........ -|..... .++|++..|.|-.. .....+ ..
T Consensus 214 ~~ik~~kP------~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~------~~~~~~---------~~ 272 (311)
T PF02638_consen 214 DAIKAIKP------WVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWSD------FSHFTA---------PY 272 (311)
T ss_pred HHHHHhCC------CCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeecccc------cchhHH---------HH
Confidence 99998755 577888765332111111 1444443 67999999999431 111112 46
Q ss_pred HHHHHHHHHcCCC-CCceEEecceeeE
Q 043488 236 EYGITEWIEEGLS-ADKLVLCLPFYGY 261 (409)
Q Consensus 236 ~~~v~~~~~~g~p-~~KivlGlp~yG~ 261 (409)
+..+..|.+.-.+ .-+|.+|+.+|-.
T Consensus 273 ~~~~~~w~~~~~~~~v~ly~G~~~y~~ 299 (311)
T PF02638_consen 273 EQLAKWWAKQVKPTNVHLYIGLALYKV 299 (311)
T ss_pred HHHHHHHHHhhcCCCceEEEccCcCCC
Confidence 6777788776444 3489999988864
No 28
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=97.88 E-value=6.5e-05 Score=72.22 Aligned_cols=156 Identities=13% Similarity=0.098 Sum_probs=92.6
Q ss_pred HHHHHHHhhCCCcEEEEEEc-CCCCCCCcccccccC-ChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCc-ccHhhHHH
Q 043488 77 NFTDTVKIKNPSITTLLSIG-GGNNPNYSSYSSMAG-NPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTS-RDKYNIGI 153 (409)
Q Consensus 77 ~~~~~lk~~~p~~kvllsiG-G~~~~~~~~~~~~~~-~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~-~~~~~~~~ 153 (409)
..++.+|+. |+|||=+|- .|+. ..+....++. ++.....+++.++++++-|||||.-|++|.+... ...+++..
T Consensus 46 ~widaAHrn--GV~vLGTiife~~~-~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~ 122 (311)
T PF03644_consen 46 GWIDAAHRN--GVKVLGTIIFEWGG-GAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLSGPEDAENLID 122 (311)
T ss_dssp HHHHHHHHT--T--EEEEEEEEEE---HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESSTTGGGHHHHHH
T ss_pred hhHHHHHhc--CceEEEEEEecCCc-hHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCCchhHHHHHHH
Confidence 355556554 899985552 2221 2456778887 8888899999999999999999999999988764 68899999
Q ss_pred HHHHHHHHHHHHhhcCCCCceeEEEE--Eeec-CcccccCCCCh--hHHhccccEEEeeccCCCCCCCCCCCCCCCcCCC
Q 043488 154 LFKEWRAAVALEARNNSSQSQLILTA--KVAY-SPLSTAAAYPV--DSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYD 228 (409)
Q Consensus 154 ll~~Lr~~l~~~~~~~~~~~~~~Ls~--a~~~-~~~~~~~~y~~--~~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl~~ 228 (409)
|+++|+++.++ .. +..|.- ++.. ..-.++..++- ....+.+|-+.+ .|. |..
T Consensus 123 F~~~l~~~~~~-~~------~~~v~WYDs~t~~G~l~~qn~Ln~~N~~f~~~~d~iFl-NY~----W~~----------- 179 (311)
T PF03644_consen 123 FLKYLRKEAHE-NP------GSEVIWYDSVTNSGRLSWQNELNDKNKPFFDVCDGIFL-NYN----WNP----------- 179 (311)
T ss_dssp HHHHHHHHHHH-T-------T-EEEEES-B-SSSSB---SSS-TTTGGGBES-SEEEE--S------SH-----------
T ss_pred HHHHHHHHhhc-CC------CcEEEEeecCCcCCccchHHHHHhhCcchhhhcceeeE-ecC----CCc-----------
Confidence 99999999997 32 122222 2111 11112211110 112345565422 221 211
Q ss_pred CCCCCcHHHHHHHHHHcCCCCCceEEecceeeEE
Q 043488 229 PNSVSNTEYGITEWIEEGLSADKLVLCLPFYGYA 262 (409)
Q Consensus 229 ~~~~~~~~~~v~~~~~~g~p~~KivlGlp~yG~~ 262 (409)
.+.+.+++...+.+.+|.+|..|+=..|+.
T Consensus 180 ----~~l~~s~~~A~~~~~~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 180 ----DSLESSVANAKSRGRDPYDVYAGIDVFGRG 209 (311)
T ss_dssp ----HHHHHHHHHHHHHTS-GGGEEEEEEHHHHT
T ss_pred ----ccHHHHHHHHHHcCCCHHHEEEEEEEEcCC
Confidence 146788888889999999999999988886
No 29
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.78 E-value=0.0099 Score=57.06 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHHHHHHcCCCeEEEee-eccCC----------cc----cHhhHHHHHHHHHHHHHHHhhcCCCCceeEE
Q 043488 113 PSFRKYFIDSSIKIARLYGFQGLDLSW-NQANT----------SR----DKYNIGILFKEWRAAVALEARNNSSQSQLIL 177 (409)
Q Consensus 113 ~~~r~~fi~sii~~l~~~~~DGIdiDw-E~p~~----------~~----~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~L 177 (409)
++.++-.+ .|.+-+.+.|||.|.||+ .+|.. .. -.+....||+..|+++++.+. .|
T Consensus 120 ~evw~Y~i-~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v--------~v 190 (316)
T PF13200_consen 120 KEVWDYNI-DIAKEAAKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPYGV--------PV 190 (316)
T ss_pred HHHHHHHH-HHHHHHHHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHcCC--------CE
Confidence 34444444 577777788999999998 67761 11 235788999999999988754 78
Q ss_pred EEEeecCcccc----cCCCChhHHhccccEEEeeccCCCCCCCCCCCCCCCcC
Q 043488 178 TAKVAYSPLST----AAAYPVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAAL 226 (409)
Q Consensus 178 s~a~~~~~~~~----~~~y~~~~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl 226 (409)
|+.+.+.+... ..+=++..++++||+|.-|.|-=| |..+..|...|-
T Consensus 191 SaDVfG~~~~~~~~~~iGQ~~~~~a~~vD~IsPMiYPSh--~~~g~~g~~~P~ 241 (316)
T PF13200_consen 191 SADVFGYVAWSPDDMGIGQDFEKIAEYVDYISPMIYPSH--YGPGFFGIDKPD 241 (316)
T ss_pred EEEecccccccCCCCCcCCCHHHHhhhCCEEEecccccc--cCcccCCCCCcc
Confidence 98887543332 223489999999999999998533 444444544443
No 30
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=97.52 E-value=0.0011 Score=57.66 Aligned_cols=85 Identities=7% Similarity=0.067 Sum_probs=59.5
Q ss_pred ChhHHHHHHHHHHHHHHH-cCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCcccccC
Q 043488 112 NPSFRKYFIDSSIKIARL-YGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAA 190 (409)
Q Consensus 112 ~~~~r~~fi~sii~~l~~-~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~~~~~~~ 190 (409)
+++..++..+.+.++-.. +...||.||+..+. .....|..|+++||..+... +.||++.=.......
T Consensus 22 ~~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~t--~~L~~Y~~fL~~LR~~LP~~---------~~LSIT~L~dW~~~~- 89 (181)
T PF11340_consen 22 PEQVLARILQLLQRWQAAGNNVAGIQIDFDAAT--SRLPAYAQFLQQLRQRLPPD---------YRLSITALPDWLSSP- 89 (181)
T ss_pred CHHHHHHHHHHHHHHHHcCCCceEEEEecCccc--cchHHHHHHHHHHHHhCCCC---------ceEeeEEehhhhcCc-
Confidence 355555555555555533 35889999999776 47889999999999999875 567775432211111
Q ss_pred CCChhHHhccccEEEeecc
Q 043488 191 AYPVDSIRQYLNWVHVITT 209 (409)
Q Consensus 191 ~y~~~~l~~~vD~v~vm~Y 209 (409)
. .+..+...+|.+.+|+|
T Consensus 90 ~-~L~~L~~~VDE~VlQ~y 107 (181)
T PF11340_consen 90 D-WLNALPGVVDELVLQVY 107 (181)
T ss_pred h-hhhhHhhcCCeeEEEee
Confidence 1 36788889999999999
No 31
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=95.41 E-value=0.21 Score=48.91 Aligned_cols=83 Identities=11% Similarity=0.163 Sum_probs=68.3
Q ss_pred HHHHhhCCCcEEEEE-EcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHH
Q 043488 80 DTVKIKNPSITTLLS-IGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEW 158 (409)
Q Consensus 80 ~~lk~~~p~~kvlls-iGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~L 158 (409)
+.++++ |++|+=+ |-.|.. ....-..++.++++.+..++.++++.+-.||||.-|+.|...+-....++..|++.|
T Consensus 118 n~AHrH--GV~vlGTFItEw~e-g~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiEn~i~~~~i~~l~~F~~~L 194 (526)
T KOG2331|consen 118 NTAHRH--GVKVLGTFITEWDE-GKATCKEFLATEESVEMTVERLVELARFFGFDGWLINIENKIDLAKIPNLIQFVSHL 194 (526)
T ss_pred chhhhc--CceeeeeEEEEecc-chhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEeeeccChhhCccHHHHHHHH
Confidence 344444 8999865 345654 456678889999999999999999999999999999999876656677999999999
Q ss_pred HHHHHHH
Q 043488 159 RAAVALE 165 (409)
Q Consensus 159 r~~l~~~ 165 (409)
.+.+++.
T Consensus 195 t~~~~~~ 201 (526)
T KOG2331|consen 195 TKVLHSS 201 (526)
T ss_pred HHHHhhc
Confidence 9999875
No 32
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.59 E-value=3.8 Score=38.72 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=33.8
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcC---CCCCC----CcccccccCChhH--HHHHHHHHHHHHHHcCCCeEEEeeec
Q 043488 71 DEKQFSNFTDTVKIKNPSITTLLSIGG---GNNPN----YSSYSSMAGNPSF--RKYFIDSSIKIARLYGFQGLDLSWNQ 141 (409)
Q Consensus 71 ~~~~~~~~~~~lk~~~p~~kvllsiGG---~~~~~----~~~~~~~~~~~~~--r~~fi~sii~~l~~~~~DGIdiDwE~ 141 (409)
|.....++.++ +++.|+|||+-+-= |.+|. +..|..+--++.+ .-.+.+.++..+++ .||++||-+
T Consensus 102 D~~k~ieiakR--Ak~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~---eGi~pdmVQ 176 (403)
T COG3867 102 DLKKAIEIAKR--AKNLGMKVLLDFHYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKK---EGILPDMVQ 176 (403)
T ss_pred hHHHHHHHHHH--HHhcCcEEEeeccchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHH---cCCCccceE
Confidence 44444455443 34559999998742 33221 1122222111111 11344555666665 578899876
Q ss_pred cC
Q 043488 142 AN 143 (409)
Q Consensus 142 p~ 143 (409)
.+
T Consensus 177 VG 178 (403)
T COG3867 177 VG 178 (403)
T ss_pred ec
Confidence 55
No 33
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=94.02 E-value=3.1 Score=39.24 Aligned_cols=193 Identities=12% Similarity=0.126 Sum_probs=105.5
Q ss_pred CCccEEEE-EEEEEeCCCe--EEecCCcc----hhHHHHHHHHHHhhCCCcEEEEEE--cCCCCCCCc------------
Q 043488 46 ALFTHLMC-GFADVNSTSY--ELSLSPSD----EKQFSNFTDTVKIKNPSITTLLSI--GGGNNPNYS------------ 104 (409)
Q Consensus 46 ~~~Thii~-~f~~i~~~~~--~~~~~~~~----~~~~~~~~~~lk~~~p~~kvllsi--GG~~~~~~~------------ 104 (409)
-..++|++ +|...+.+|. .+.+++.. ...|....=.++.+. ++||..-. -++..|...
T Consensus 29 ~~~~tV~Lqaf~d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~-~v~VyAWMPvlaf~lp~~~~~~~~~~~~~~~ 107 (294)
T PF14883_consen 29 MGINTVYLQAFADPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRA-GVKVYAWMPVLAFDLPKVKRADEVRTDRPDP 107 (294)
T ss_pred cCCCEEEEEeeeCCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhh-CCEEEEeeehhhccCCCcchhhhccccCCCC
Confidence 35777777 5555555542 24555443 233444432455444 78887432 222221111
Q ss_pred -ccccc-cCChhHHHHHHHHHHHHHHHc-CCCeEEEeeeccCCc-------------ccHhhHHHHHHHHHHHHHHHhhc
Q 043488 105 -SYSSM-AGNPSFRKYFIDSSIKIARLY-GFQGLDLSWNQANTS-------------RDKYNIGILFKEWRAAVALEARN 168 (409)
Q Consensus 105 -~~~~~-~~~~~~r~~fi~sii~~l~~~-~~DGIdiDwE~p~~~-------------~~~~~~~~ll~~Lr~~l~~~~~~ 168 (409)
....+ .-+++.| +.|.+|-+=|..| .||||=|.=....++ .....+..|..+|++..+....
T Consensus 108 ~~y~RLSPf~p~~r-~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~Kt~~Li~ft~eL~~~v~~~rp- 185 (294)
T PF14883_consen 108 DGYRRLSPFDPEAR-QIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQKTRALIDFTMELAAAVRRYRP- 185 (294)
T ss_pred CCceecCCCCHHHH-HHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhhHHHHHHHHHHHHHHHHHHHHhCc-
Confidence 11111 1134444 4566787777777 899998843322211 1224678899999999887643
Q ss_pred CCCCceeEEEEEeecCcccccCC---C--ChhHHhccccEEEeeccCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHH
Q 043488 169 NSSQSQLILTAKVAYSPLSTAAA---Y--PVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYDPNSVSNTEYGITEWI 243 (409)
Q Consensus 169 ~~~~~~~~Ls~a~~~~~~~~~~~---y--~~~~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~ 243 (409)
++...--+.+.|-....+ | ++....+.-||..+|+.-+... ... | ..+....++...
T Consensus 186 -----~lkTARNiya~pvl~P~se~WfAQnl~~fl~~YD~taimAMPymE~----~~~---~------~~WL~~Lv~~v~ 247 (294)
T PF14883_consen 186 -----DLKTARNIYAEPVLNPESEAWFAQNLDDFLKAYDYTAIMAMPYMEQ----AED---P------EQWLAQLVDAVA 247 (294)
T ss_pred -----cchhhhcccccccCCcchhhHHHHhHHHHHHhCCeeheeccchhcc----ccC---H------HHHHHHHHHHHH
Confidence 122222222222222111 2 6777888889999998766533 111 1 126667777777
Q ss_pred HcCCCCCceEEeccee
Q 043488 244 EEGLSADKLVLCLPFY 259 (409)
Q Consensus 244 ~~g~p~~KivlGlp~y 259 (409)
+...+.+|+++-|...
T Consensus 248 ~~p~~l~KtvFELQa~ 263 (294)
T PF14883_consen 248 ARPGGLDKTVFELQAV 263 (294)
T ss_pred hcCCcccceEEEEecc
Confidence 7767789999887643
No 34
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=87.98 E-value=2.9 Score=34.89 Aligned_cols=65 Identities=12% Similarity=0.316 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHhhCCCcEEEE--EEcCCCC------C-----------------CCcccccccCChhHHHHHHHHHHHH
Q 043488 72 EKQFSNFTDTVKIKNPSITTLL--SIGGGNN------P-----------------NYSSYSSMAGNPSFRKYFIDSSIKI 126 (409)
Q Consensus 72 ~~~~~~~~~~lk~~~p~~kvll--siGG~~~------~-----------------~~~~~~~~~~~~~~r~~fi~sii~~ 126 (409)
...+.++++.+|++ |++|++ +++ |.. | ....+...-.|...++.++..+.++
T Consensus 43 ~Dllge~v~a~h~~--Girv~ay~~~~-~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei 119 (132)
T PF14871_consen 43 RDLLGEQVEACHER--GIRVPAYFDFS-WDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREI 119 (132)
T ss_pred cCHHHHHHHHHHHC--CCEEEEEEeee-cChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHH
Confidence 35678888888888 788884 443 221 0 0112455666778888889999999
Q ss_pred HHHcCCCeEEEee
Q 043488 127 ARLYGFQGLDLSW 139 (409)
Q Consensus 127 l~~~~~DGIdiDw 139 (409)
+++|++|||-+||
T Consensus 120 ~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 120 LDRYDVDGIFFDI 132 (132)
T ss_pred HHcCCCCEEEecC
Confidence 9999999999996
No 35
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=87.01 E-value=5.7 Score=37.72 Aligned_cols=59 Identities=24% Similarity=0.363 Sum_probs=38.6
Q ss_pred CCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcc------cHhhHHHHHHHHHH
Q 043488 87 PSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSR------DKYNIGILFKEWRA 160 (409)
Q Consensus 87 p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~------~~~~~~~ll~~Lr~ 160 (409)
++..++++|+|.. + +.++ .+++.+.++|+|+|+|++--|.... +.+....+++++|+
T Consensus 97 ~~~pvi~si~g~~-------------~---~~~~-~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~ 159 (289)
T cd02810 97 PGQPLIASVGGSS-------------K---EDYV-ELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKA 159 (289)
T ss_pred CCCeEEEEeccCC-------------H---HHHH-HHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHH
Confidence 5788999999842 2 2343 3556667779999999998775321 23344556666665
Q ss_pred HH
Q 043488 161 AV 162 (409)
Q Consensus 161 ~l 162 (409)
..
T Consensus 160 ~~ 161 (289)
T cd02810 160 AV 161 (289)
T ss_pred cc
Confidence 54
No 36
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=86.76 E-value=4.3 Score=39.19 Aligned_cols=86 Identities=10% Similarity=0.043 Sum_probs=50.8
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCeEEEee----eccCC-----cccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEee
Q 043488 112 NPSFRKYFIDSSIKIARLYGFQGLDLSW----NQANT-----SRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVA 182 (409)
Q Consensus 112 ~~~~r~~fi~sii~~l~~~~~DGIdiDw----E~p~~-----~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~ 182 (409)
+++-|+-+.+. ++.+.+.||||+.+|. ++... +...+.+.+++++|.+..++..+ +++| -+.
T Consensus 142 ~~~W~~il~~r-l~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P------~~~I--I~N 212 (315)
T TIGR01370 142 DPEWKAIAFSY-LDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNP------QFVI--IPQ 212 (315)
T ss_pred cHHHHHHHHHH-HHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCC------CEEE--Eec
Confidence 45666666655 6677788999999995 22111 23346788999999888887654 2332 112
Q ss_pred cCcccccCCCChhHHhccccEEEeec
Q 043488 183 YSPLSTAAAYPVDSIRQYLNWVHVIT 208 (409)
Q Consensus 183 ~~~~~~~~~y~~~~l~~~vD~v~vm~ 208 (409)
.+..... ++-..+.+.+|.|+..+
T Consensus 213 nG~eil~--~~~g~~~~~idgV~~Es 236 (315)
T TIGR01370 213 NGEELLR--DDHGGLAATVSGWAVEE 236 (315)
T ss_pred Cchhhhh--ccccchhhhceEEEecc
Confidence 1111111 11123566788887776
No 37
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.71 E-value=1.6 Score=43.49 Aligned_cols=90 Identities=11% Similarity=0.129 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHHHHHHcCCCeEEEeee--ccCC----------------------cc-----cHhhHHHHHHHHHHHHH
Q 043488 113 PSFRKYFIDSSIKIARLYGFQGLDLSWN--QANT----------------------SR-----DKYNIGILFKEWRAAVA 163 (409)
Q Consensus 113 ~~~r~~fi~sii~~l~~~~~DGIdiDwE--~p~~----------------------~~-----~~~~~~~ll~~Lr~~l~ 163 (409)
|+.|+-..+-+++.++.|..|||.||-- +|.. +. -+++..+|++.+...++
T Consensus 181 Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VK 260 (418)
T COG1649 181 PEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVK 260 (418)
T ss_pred hHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5666667778899999999999999942 2210 11 13577899999999998
Q ss_pred HHhhcCCCCceeEEEEEe-ecCcccccCCCC-----hhHH--hccccEEEeecc
Q 043488 164 LEARNNSSQSQLILTAKV-AYSPLSTAAAYP-----VDSI--RQYLNWVHVITT 209 (409)
Q Consensus 164 ~~~~~~~~~~~~~Ls~a~-~~~~~~~~~~y~-----~~~l--~~~vD~v~vm~Y 209 (409)
+..+ +..+++++ +.... ..-.|+ .... ..++|++..|.|
T Consensus 261 avKp------~v~~svsp~n~~~~-~~f~y~~~~qDw~~Wv~~G~iD~l~pqvY 307 (418)
T COG1649 261 AVKP------NVKFSVSPFNPLGS-ATFAYDYFLQDWRRWVRQGLIDELAPQVY 307 (418)
T ss_pred hhCC------CeEEEEccCCCCCc-cceehhhhhhhHHHHHHcccHhhhhhhhh
Confidence 8754 68888877 31111 000232 1111 467999999999
No 38
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=86.56 E-value=6.5 Score=43.42 Aligned_cols=84 Identities=14% Similarity=0.264 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhCCCcEEEEEE-------cCCCCCC------Cccc---------c-------cccCChhHHHHHHHHHH
Q 043488 74 QFSNFTDTVKIKNPSITTLLSI-------GGGNNPN------YSSY---------S-------SMAGNPSFRKYFIDSSI 124 (409)
Q Consensus 74 ~~~~~~~~lk~~~p~~kvllsi-------GG~~~~~------~~~~---------~-------~~~~~~~~r~~fi~sii 124 (409)
.++++++.+|++ |++|++=+ +|....+ +..| . ....++.-|+-+++++.
T Consensus 405 Efk~mV~alH~~--Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~ 482 (898)
T TIGR02103 405 EFREMVQALNKT--GLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLV 482 (898)
T ss_pred HHHHHHHHHHHC--CCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHH
Confidence 577888888876 89999865 2211100 0000 0 11234677888999999
Q ss_pred HHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHh
Q 043488 125 KIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEA 166 (409)
Q Consensus 125 ~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~ 166 (409)
-|+++|++||+-||.-.-. + ..+++++++++++..
T Consensus 483 ~W~~ey~VDGFRfDlm~~~---~----~~f~~~~~~~l~~i~ 517 (898)
T TIGR02103 483 VWAKDYKVDGFRFDLMGHH---P----KAQMLAAREAIKALT 517 (898)
T ss_pred HHHHHcCCCEEEEechhhC---C----HHHHHHHHHHHHHhC
Confidence 9999999999999975322 1 257777777777654
No 39
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=85.67 E-value=12 Score=36.88 Aligned_cols=87 Identities=18% Similarity=0.157 Sum_probs=44.2
Q ss_pred ccEEEEEEEEEeCCCeE----Eec-CCcchhHHHHHHHHHHhhCCCcEEEEEE--cCCCCCCCc--------------cc
Q 043488 48 FTHLMCGFADVNSTSYE----LSL-SPSDEKQFSNFTDTVKIKNPSITTLLSI--GGGNNPNYS--------------SY 106 (409)
Q Consensus 48 ~Thii~~f~~i~~~~~~----~~~-~~~~~~~~~~~~~~lk~~~p~~kvllsi--GG~~~~~~~--------------~~ 106 (409)
+--|+.....+++++.. ... ++...+.++++++.+|+. +.|+++-+ +|... ... ..
T Consensus 47 ~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~vh~~--g~~~~~QL~h~G~~~-~~~~~~~ps~~~~~~~~~~ 123 (353)
T cd02930 47 VGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAE--GGKIALQILHAGRYA-YHPLCVAPSAIRAPINPFT 123 (353)
T ss_pred ceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHHHHc--CCEEEeeccCCCCCC-CCCCCcCCCCCCCCCCCCC
Confidence 44455555556554311 111 122345566777777775 78888776 22211 010 00
Q ss_pred ccccCChh----HHHHHHHHHHHHHHHcCCCeEEEee
Q 043488 107 SSMAGNPS----FRKYFIDSSIKIARLYGFQGLDLSW 139 (409)
Q Consensus 107 ~~~~~~~~----~r~~fi~sii~~l~~~~~DGIdiDw 139 (409)
...+ +.+ -.+.|++... .+++-|||||+|..
T Consensus 124 p~~m-t~~eI~~i~~~f~~aA~-~a~~aGfDgVeih~ 158 (353)
T cd02930 124 PREL-SEEEIEQTIEDFARCAA-LAREAGYDGVEIMG 158 (353)
T ss_pred CCCC-CHHHHHHHHHHHHHHHH-HHHHcCCCEEEEec
Confidence 1111 222 3455665444 44557999999986
No 40
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=85.55 E-value=8.8 Score=40.71 Aligned_cols=85 Identities=15% Similarity=0.295 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEE-----cCCCC-C----CCccc------------c-----cccCChhHHHHHHHHHHH
Q 043488 73 KQFSNFTDTVKIKNPSITTLLSI-----GGGNN-P----NYSSY------------S-----SMAGNPSFRKYFIDSSIK 125 (409)
Q Consensus 73 ~~~~~~~~~lk~~~p~~kvllsi-----GG~~~-~----~~~~~------------~-----~~~~~~~~r~~fi~sii~ 125 (409)
..++.+++.+|++ |++|++=+ ++... + .+..| + --..++.-|+-+++++.-
T Consensus 229 ~efk~lV~~~H~~--Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~ 306 (605)
T TIGR02104 229 RELKQMIQALHEN--GIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLY 306 (605)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHH
Confidence 5688888888887 89999865 11000 0 00000 0 012357788889999999
Q ss_pred HHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHh
Q 043488 126 IARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEA 166 (409)
Q Consensus 126 ~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~ 166 (409)
|+++|++||+-||--... + ..+++++++++++..
T Consensus 307 W~~e~~iDGfR~D~~~~~---~----~~~~~~~~~~~~~~~ 340 (605)
T TIGR02104 307 WVKEYNIDGFRFDLMGIH---D----IETMNEIRKALNKID 340 (605)
T ss_pred HHHHcCCCEEEEechhcC---C----HHHHHHHHHHHHhhC
Confidence 999999999999964222 1 247888888887654
No 41
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=85.26 E-value=7 Score=40.87 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=60.2
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcC-CCCCCCc-------ccc----------cccCCh---hHHHHHHHHHHHHHHH
Q 043488 71 DEKQFSNFTDTVKIKNPSITTLLSIGG-GNNPNYS-------SYS----------SMAGNP---SFRKYFIDSSIKIARL 129 (409)
Q Consensus 71 ~~~~~~~~~~~lk~~~p~~kvllsiGG-~~~~~~~-------~~~----------~~~~~~---~~r~~fi~sii~~l~~ 129 (409)
....++.+++.++++ |++|++-+-- ...++.. .|. --..++ .-|+.+++++.-|+++
T Consensus 158 ~~~e~k~lV~~aH~~--Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e 235 (542)
T TIGR02402 158 GPDDLKALVDAAHGL--GLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLRE 235 (542)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 456788899888887 8999987521 1100000 010 012334 7888999999999999
Q ss_pred cCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHhh
Q 043488 130 YGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEAR 167 (409)
Q Consensus 130 ~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~~ 167 (409)
|++||+-||--......+ -..|++++++.+++..+
T Consensus 236 ~~iDGfR~D~~~~~~~~~---~~~~l~~~~~~~~~~~p 270 (542)
T TIGR02402 236 YHFDGLRLDAVHAIADTS---AKHILEELAREVHELAA 270 (542)
T ss_pred hCCcEEEEeCHHHhcccc---HHHHHHHHHHHHHHHCC
Confidence 999999999532111111 24789999999987643
No 42
>PRK12313 glycogen branching enzyme; Provisional
Probab=84.20 E-value=10 Score=40.50 Aligned_cols=94 Identities=15% Similarity=0.197 Sum_probs=61.0
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcC-CCCCC---------C-------------cccc---cccCChhHHHHHHHHHH
Q 043488 71 DEKQFSNFTDTVKIKNPSITTLLSIGG-GNNPN---------Y-------------SSYS---SMAGNPSFRKYFIDSSI 124 (409)
Q Consensus 71 ~~~~~~~~~~~lk~~~p~~kvllsiGG-~~~~~---------~-------------~~~~---~~~~~~~~r~~fi~sii 124 (409)
....++.+++.++++ |++|++-+-- ...++ + ..|. --..+++.|+-+++++.
T Consensus 218 t~~d~k~lv~~~H~~--Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~ 295 (633)
T PRK12313 218 TPEDFMYLVDALHQN--GIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSAL 295 (633)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 456788999888888 8999986411 00000 0 0111 11246888999999999
Q ss_pred HHHHHcCCCeEEEeee-c------------cC----CcccHhhHHHHHHHHHHHHHHHhh
Q 043488 125 KIARLYGFQGLDLSWN-Q------------AN----TSRDKYNIGILFKEWRAAVALEAR 167 (409)
Q Consensus 125 ~~l~~~~~DGIdiDwE-~------------p~----~~~~~~~~~~ll~~Lr~~l~~~~~ 167 (409)
-|+++|++||+-+|-- . .. ...+. .=..|++++++.+++..+
T Consensus 296 ~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~fl~~~~~~v~~~~p 354 (633)
T PRK12313 296 FWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENL-EAIYFLQKLNEVVYLEHP 354 (633)
T ss_pred HHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCc-HHHHHHHHHHHHHHHHCC
Confidence 9999999999999921 0 00 00111 225799999999987643
No 43
>PRK12568 glycogen branching enzyme; Provisional
Probab=83.82 E-value=12 Score=40.36 Aligned_cols=95 Identities=16% Similarity=0.296 Sum_probs=63.0
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcC-CC-----------C------CCC-----ccccc---ccCChhHHHHHHHHHH
Q 043488 71 DEKQFSNFTDTVKIKNPSITTLLSIGG-GN-----------N------PNY-----SSYSS---MAGNPSFRKYFIDSSI 124 (409)
Q Consensus 71 ~~~~~~~~~~~lk~~~p~~kvllsiGG-~~-----------~------~~~-----~~~~~---~~~~~~~r~~fi~sii 124 (409)
....++.+++.++++ |++|++-+-- .. . ++. ..|.. -..+++-|+-+++++.
T Consensus 317 ~~~dfk~lV~~~H~~--Gi~VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~ 394 (730)
T PRK12568 317 SPDGFAQFVDACHRA--GIGVILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSAL 394 (730)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHH
Confidence 456788999888887 8999986511 00 0 000 01111 2456788999999999
Q ss_pred HHHHHcCCCeEEEee--------------ecc-CCcccHhhH--HHHHHHHHHHHHHHhh
Q 043488 125 KIARLYGFQGLDLSW--------------NQA-NTSRDKYNI--GILFKEWRAAVALEAR 167 (409)
Q Consensus 125 ~~l~~~~~DGIdiDw--------------E~p-~~~~~~~~~--~~ll~~Lr~~l~~~~~ 167 (409)
-++++|++||+-+|- |+. .....++|+ ..|++++++.+++..+
T Consensus 395 ~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P 454 (730)
T PRK12568 395 EWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFP 454 (730)
T ss_pred HHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCC
Confidence 999999999999992 111 111122233 5799999999998744
No 44
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=83.52 E-value=4.6 Score=38.13 Aligned_cols=83 Identities=10% Similarity=0.132 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCCeEEEee-eccCCc---------------ccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEee
Q 043488 119 FIDSSIKIARLYGFQGLDLSW-NQANTS---------------RDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVA 182 (409)
Q Consensus 119 fi~sii~~l~~~~~DGIdiDw-E~p~~~---------------~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~ 182 (409)
+--+|.+-+.+.|||-|.||+ .+|.+. +..+.+..|+.--|+++. .-+|+.+.
T Consensus 197 YNvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~-----------vpIS~DIY 265 (400)
T COG1306 197 YNVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELE-----------VPISADIY 265 (400)
T ss_pred hhHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhcc-----------cceEEEee
Confidence 334678888899999999998 567531 112345566666666655 24667665
Q ss_pred cCcc----cccCCCChhHHhccccEEEeeccCCC
Q 043488 183 YSPL----STAAAYPVDSIRQYLNWVHVITTEYS 212 (409)
Q Consensus 183 ~~~~----~~~~~y~~~~l~~~vD~v~vm~YD~~ 212 (409)
.... ....+-+++.++.+||.|.-|.|--|
T Consensus 266 G~nGw~~t~~~~GQ~~e~ls~yVDvIsPMfYPSH 299 (400)
T COG1306 266 GQNGWSSTDMALGQFWEALSSYVDVISPMFYPSH 299 (400)
T ss_pred cccCccCCcchhhhhHHHHHhhhhhccccccccc
Confidence 3211 11123478899999999999999644
No 45
>PRK05402 glycogen branching enzyme; Provisional
Probab=82.02 E-value=16 Score=39.76 Aligned_cols=95 Identities=16% Similarity=0.231 Sum_probs=62.2
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEc-CCCCCC---------C-------------cccc---cccCChhHHHHHHHHHH
Q 043488 71 DEKQFSNFTDTVKIKNPSITTLLSIG-GGNNPN---------Y-------------SSYS---SMAGNPSFRKYFIDSSI 124 (409)
Q Consensus 71 ~~~~~~~~~~~lk~~~p~~kvllsiG-G~~~~~---------~-------------~~~~---~~~~~~~~r~~fi~sii 124 (409)
....++.+++.++++ |++|++-+- ....++ + ..|. --..+++-|+-+++++.
T Consensus 313 t~~dfk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~ 390 (726)
T PRK05402 313 TPDDFRYFVDACHQA--GIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANAL 390 (726)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHH
Confidence 456788999888887 899998651 100000 0 0111 13456888999999999
Q ss_pred HHHHHcCCCeEEEee-ec--------------cCC--cccHhhHHHHHHHHHHHHHHHhh
Q 043488 125 KIARLYGFQGLDLSW-NQ--------------ANT--SRDKYNIGILFKEWRAAVALEAR 167 (409)
Q Consensus 125 ~~l~~~~~DGIdiDw-E~--------------p~~--~~~~~~~~~ll~~Lr~~l~~~~~ 167 (409)
-|++++++||+-+|- .. |.. ..+...-..|++++++.++...+
T Consensus 391 ~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p 450 (726)
T PRK05402 391 YWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFP 450 (726)
T ss_pred HHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCC
Confidence 999999999999993 11 100 00111246799999999987643
No 46
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=81.70 E-value=46 Score=32.56 Aligned_cols=88 Identities=14% Similarity=0.173 Sum_probs=46.5
Q ss_pred ccEEEEEEEEEeCCCe----EEec-CCcchhHHHHHHHHHHhhCCCcEEEEEEc--CCCCCCCc--c-----cccc----
Q 043488 48 FTHLMCGFADVNSTSY----ELSL-SPSDEKQFSNFTDTVKIKNPSITTLLSIG--GGNNPNYS--S-----YSSM---- 109 (409)
Q Consensus 48 ~Thii~~f~~i~~~~~----~~~~-~~~~~~~~~~~~~~lk~~~p~~kvllsiG--G~~~~~~~--~-----~~~~---- 109 (409)
.--|+.....+++.+. .+.+ ++...+.++++++.+|++ +.|+++-+. |... ... . -+.+
T Consensus 47 ~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--g~~~~~Ql~H~G~~~-~~~~~~~~~~~ps~~~~~~ 123 (343)
T cd04734 47 AGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAH--GAVIMIQLTHLGRRG-DGDGSWLPPLAPSAVPEPR 123 (343)
T ss_pred CCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhc--CCeEEEeccCCCcCc-CcccCCCcccCCCCCCCCC
Confidence 3445556666665531 1112 222335677888888886 678887663 3221 000 0 0000
Q ss_pred ------cCC----hhHHHHHHHHHHHHHHHcCCCeEEEee
Q 043488 110 ------AGN----PSFRKYFIDSSIKIARLYGFQGLDLSW 139 (409)
Q Consensus 110 ------~~~----~~~r~~fi~sii~~l~~~~~DGIdiDw 139 (409)
..+ .+-.+.|++... .+.+-|||||+|+-
T Consensus 124 ~~~~~~~mt~~eI~~ii~~f~~AA~-ra~~aGfDgVeih~ 162 (343)
T cd04734 124 HRAVPKAMEEEDIEEIIAAFADAAR-RCQAGGLDGVELQA 162 (343)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEcc
Confidence 011 233456665444 44567999999998
No 47
>PRK14706 glycogen branching enzyme; Provisional
Probab=81.47 E-value=18 Score=38.61 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=61.3
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEc----CCC--------C-C-----CC-----ccccc---ccCChhHHHHHHHHHH
Q 043488 71 DEKQFSNFTDTVKIKNPSITTLLSIG----GGN--------N-P-----NY-----SSYSS---MAGNPSFRKYFIDSSI 124 (409)
Q Consensus 71 ~~~~~~~~~~~lk~~~p~~kvllsiG----G~~--------~-~-----~~-----~~~~~---~~~~~~~r~~fi~sii 124 (409)
....++.+++.++++ |++|++-+- |+. + + +. ..|.. -..+++-|+-+++++.
T Consensus 215 ~~~~~~~lv~~~H~~--gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~ 292 (639)
T PRK14706 215 TPEDFKYLVNHLHGL--GIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSAL 292 (639)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 456788899888887 899998651 000 0 0 00 01111 1246788999999999
Q ss_pred HHHHHcCCCeEEEee-ecc------------CCcc--cHhhHHHHHHHHHHHHHHHhh
Q 043488 125 KIARLYGFQGLDLSW-NQA------------NTSR--DKYNIGILFKEWRAAVALEAR 167 (409)
Q Consensus 125 ~~l~~~~~DGIdiDw-E~p------------~~~~--~~~~~~~ll~~Lr~~l~~~~~ 167 (409)
-|++++++||+-+|- ... .... ....=..|+++|++.+++..+
T Consensus 293 ~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p 350 (639)
T PRK14706 293 KWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAP 350 (639)
T ss_pred HHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCC
Confidence 999999999999994 211 0000 112235799999999987643
No 48
>PLN02960 alpha-amylase
Probab=81.28 E-value=18 Score=39.61 Aligned_cols=94 Identities=11% Similarity=0.084 Sum_probs=61.1
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEc--------C-----CCCCC-----------Cccccc---ccCChhHHHHHHHHH
Q 043488 71 DEKQFSNFTDTVKIKNPSITTLLSIG--------G-----GNNPN-----------YSSYSS---MAGNPSFRKYFIDSS 123 (409)
Q Consensus 71 ~~~~~~~~~~~lk~~~p~~kvllsiG--------G-----~~~~~-----------~~~~~~---~~~~~~~r~~fi~si 123 (409)
....++.+++.++++ |++|++-+- + +.... ...|.. -..+++-|+-+++++
T Consensus 464 tp~dfk~LVd~aH~~--GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna 541 (897)
T PLN02960 464 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNL 541 (897)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHH
Confidence 456788999888887 799998761 0 00000 001111 135688889999999
Q ss_pred HHHHHHcCCCeEEEee-------------------eccCCcccHhhHHHHHHHHHHHHHHHhh
Q 043488 124 IKIARLYGFQGLDLSW-------------------NQANTSRDKYNIGILFKEWRAAVALEAR 167 (409)
Q Consensus 124 i~~l~~~~~DGIdiDw-------------------E~p~~~~~~~~~~~ll~~Lr~~l~~~~~ 167 (409)
.-|+++|++||+-+|= |++... ....-..||+++.+.+++..+
T Consensus 542 ~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~-~d~~Ai~fL~~lN~~v~~~~P 603 (897)
T PLN02960 542 NWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQY-VDRDALIYLILANEMLHQLHP 603 (897)
T ss_pred HHHHHHHCCCceeecccceeeeeccCccccCCcccccCCcc-CCchHHHHHHHHHHHHHhhCC
Confidence 9999999999999982 112211 122355788888888886543
No 49
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=80.99 E-value=37 Score=36.34 Aligned_cols=195 Identities=11% Similarity=0.055 Sum_probs=102.1
Q ss_pred CCccEEEE-EEEEEeCCCe--EEecCCcch----hHHHHHHHHHHhhCCCcEEEEE--EcCCCCCCCc------------
Q 043488 46 ALFTHLMC-GFADVNSTSY--ELSLSPSDE----KQFSNFTDTVKIKNPSITTLLS--IGGGNNPNYS------------ 104 (409)
Q Consensus 46 ~~~Thii~-~f~~i~~~~~--~~~~~~~~~----~~~~~~~~~lk~~~p~~kvlls--iGG~~~~~~~------------ 104 (409)
-..+||.+ +|...+.+|. .+++++..- ..|..+.=.++.+. ++||..- +-++..+.+.
T Consensus 346 ~~~~~VyLqafadp~gdg~~~~lYFpnr~lPmraDlfnrvawql~tR~-~v~vyAWmpvl~~~l~~~~~~~~~~~~~~~~ 424 (672)
T PRK14581 346 LRVTHVFLQAFSDPKGDGNIRQVYFPNRWIPMRQDLFNRVVWQLASRP-DVEVYAWMPVLAFDMDPSLPRITRIDPKTGK 424 (672)
T ss_pred cCCCEEEEEeeeCCCCCCceeeEEecCCcccHHHhhhhHHHHHHHhhh-CceEEEeeehhhccCCcccchhhhcccccCc
Confidence 45889888 6666666652 355655532 33444422456554 7888732 2333221000
Q ss_pred ------cccccc-CChhHHHHHHHHHHHHHHHc-CCCeEEEeeeccCC----------------------------cc--
Q 043488 105 ------SYSSMA-GNPSFRKYFIDSSIKIARLY-GFQGLDLSWNQANT----------------------------SR-- 146 (409)
Q Consensus 105 ------~~~~~~-~~~~~r~~fi~sii~~l~~~-~~DGIdiDwE~p~~----------------------------~~-- 146 (409)
.+..+- -+++. .+.|.+|.+=|-.| .||||=|+-+-..+ ++
T Consensus 425 ~~~~~~~y~rlspf~~~~-~~~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~~~~~~ 503 (672)
T PRK14581 425 TSIDPDQYRRLSPFNPEV-RQRIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQDPEMM 503 (672)
T ss_pred cccCCCCccccCCCCHHH-HHHHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhcCHHHH
Confidence 111111 12333 35666777777776 89999886532111 00
Q ss_pred ------cHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCcccccCC---C--ChhHHhccccEEEeeccCCCCCC
Q 043488 147 ------DKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAA---Y--PVDSIRQYLNWVHVITTEYSSPT 215 (409)
Q Consensus 147 ------~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~~~~~~~~---y--~~~~l~~~vD~v~vm~YD~~~~~ 215 (409)
....+..|-.+|++.+++... +++...--+.+.+-....+ | ++....+..||+.+|+|-+...
T Consensus 504 ~~w~~~k~~~l~~f~~~l~~~v~~~~~-----p~~~tarniya~~~l~p~~~~w~aQ~l~~~~~~yD~~a~mamp~me~- 577 (672)
T PRK14581 504 QRWTRYKSKYLIDFTNELTREVRDIRG-----PQVKSARNIFAMPILEPESEAWFAQNLDDFLANYDWVAPMAMPLMEK- 577 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC-----ccceehhcccccccCChhHHHHHHhHHHHHHhhcchhHHhhchhhhc-
Confidence 123456788899888876431 0122221222222211111 2 6778888999999999865432
Q ss_pred CCCCCCCCCcCCCCCCCCcHHHHHHHHHHcCCCCCceEEecce
Q 043488 216 WQNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPF 258 (409)
Q Consensus 216 ~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~p~~KivlGlp~ 258 (409)
...+. +..+....++...+.-...+|+++-+..
T Consensus 578 ---~~~~~-------~~~w~~~l~~~v~~~~~~~~k~vfelQ~ 610 (672)
T PRK14581 578 ---VPLSE-------SNEWLAELVNKVAQRPGALEKTVFELQS 610 (672)
T ss_pred ---ccccc-------HHHHHHHHHHHHHhcCCcccceEEEeec
Confidence 11111 1124445555555444467999987754
No 50
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=79.27 E-value=24 Score=37.56 Aligned_cols=95 Identities=15% Similarity=0.235 Sum_probs=61.0
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEc-CCCCCC----------------------Cccccc---ccCChhHHHHHHHHHH
Q 043488 71 DEKQFSNFTDTVKIKNPSITTLLSIG-GGNNPN----------------------YSSYSS---MAGNPSFRKYFIDSSI 124 (409)
Q Consensus 71 ~~~~~~~~~~~lk~~~p~~kvllsiG-G~~~~~----------------------~~~~~~---~~~~~~~r~~fi~sii 124 (409)
....++.+++.++++ |++|++-+- ....++ ...|.. -..+++-|+-+++++.
T Consensus 204 t~~dlk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~ 281 (613)
T TIGR01515 204 TPDDFMYFVDACHQA--GIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANAL 281 (613)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHH
Confidence 456788999888887 899998652 100000 001110 1256888999999999
Q ss_pred HHHHHcCCCeEEEeee-ccC-------------Cc-c--cHhhHHHHHHHHHHHHHHHhh
Q 043488 125 KIARLYGFQGLDLSWN-QAN-------------TS-R--DKYNIGILFKEWRAAVALEAR 167 (409)
Q Consensus 125 ~~l~~~~~DGIdiDwE-~p~-------------~~-~--~~~~~~~ll~~Lr~~l~~~~~ 167 (409)
-++++|++||+-||-- ... .. . ....=..|++++++.+++..+
T Consensus 282 ~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p 341 (613)
T TIGR01515 282 YWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFP 341 (613)
T ss_pred HHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCC
Confidence 9999999999999952 110 00 0 011124799999999987643
No 51
>PRK14705 glycogen branching enzyme; Provisional
Probab=78.68 E-value=28 Score=39.98 Aligned_cols=94 Identities=15% Similarity=0.197 Sum_probs=61.1
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEc-------CCC-----C------CCC-----ccccc---ccCChhHHHHHHHHHH
Q 043488 71 DEKQFSNFTDTVKIKNPSITTLLSIG-------GGN-----N------PNY-----SSYSS---MAGNPSFRKYFIDSSI 124 (409)
Q Consensus 71 ~~~~~~~~~~~lk~~~p~~kvllsiG-------G~~-----~------~~~-----~~~~~---~~~~~~~r~~fi~sii 124 (409)
....++.+++.++++ |++|++-+= +|. . ++. ..|.. -..+++-|+-+++++.
T Consensus 813 t~~dfk~lVd~~H~~--GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~ 890 (1224)
T PRK14705 813 HPDEFRFLVDSLHQA--GIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANAL 890 (1224)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHH
Confidence 566788999888887 899998641 010 0 000 01111 1346788899999999
Q ss_pred HHHHHcCCCeEEEeee-c--------------cCCcccHhh--HHHHHHHHHHHHHHHh
Q 043488 125 KIARLYGFQGLDLSWN-Q--------------ANTSRDKYN--IGILFKEWRAAVALEA 166 (409)
Q Consensus 125 ~~l~~~~~DGIdiDwE-~--------------p~~~~~~~~--~~~ll~~Lr~~l~~~~ 166 (409)
-|+++|++||+-+|-- . |.....++| =..|++++.+.+++..
T Consensus 891 ~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~ 949 (1224)
T PRK14705 891 YWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTH 949 (1224)
T ss_pred HHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHC
Confidence 9999999999999852 1 110011122 2579999999998764
No 52
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=76.64 E-value=1.1 Score=35.17 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=9.9
Q ss_pred CchhhHHHHHHHHH
Q 043488 1 MASKIIILVLYIFI 14 (409)
Q Consensus 1 M~~~~~~~~l~~~~ 14 (409)
|+||++++|.++|+
T Consensus 1 MaSK~~llL~l~LA 14 (95)
T PF07172_consen 1 MASKAFLLLGLLLA 14 (95)
T ss_pred CchhHHHHHHHHHH
Confidence 99999776655543
No 53
>PRK10785 maltodextrin glucosidase; Provisional
Probab=76.06 E-value=26 Score=37.16 Aligned_cols=57 Identities=11% Similarity=-0.050 Sum_probs=37.8
Q ss_pred CChhHHHHHHH----HHHHHHHH-cCCCeEEEeeeccC-CcccHhhHHHHHHHHHHHHHHHhh
Q 043488 111 GNPSFRKYFID----SSIKIARL-YGFQGLDLSWNQAN-TSRDKYNIGILFKEWRAAVALEAR 167 (409)
Q Consensus 111 ~~~~~r~~fi~----sii~~l~~-~~~DGIdiDwE~p~-~~~~~~~~~~ll~~Lr~~l~~~~~ 167 (409)
.+++-|+.+++ -+..|+++ +|+||+-+|--.-. .......-..|++++|+++++..+
T Consensus 303 ~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~p 365 (598)
T PRK10785 303 QSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENP 365 (598)
T ss_pred CCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhhCC
Confidence 46788888886 35557886 89999999963211 101111234789999999987643
No 54
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=75.50 E-value=6 Score=41.28 Aligned_cols=54 Identities=20% Similarity=0.381 Sum_probs=38.6
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCeEEEee--------eccCCc--ccHhhHHHHHHHHHHHHHH
Q 043488 111 GNPSFRKYFIDSSIKIARLYGFQGLDLSW--------NQANTS--RDKYNIGILFKEWRAAVAL 164 (409)
Q Consensus 111 ~~~~~r~~fi~sii~~l~~~~~DGIdiDw--------E~p~~~--~~~~~~~~ll~~Lr~~l~~ 164 (409)
.|+.-|+-++++..+.++..||||+.||= .+-+.+ .-...|..||++++++++.
T Consensus 238 ~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~ 301 (559)
T PF13199_consen 238 GNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPD 301 (559)
T ss_dssp T-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCC
Confidence 46777899999999999999999999992 122221 2256899999999999853
No 55
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=74.59 E-value=14 Score=39.40 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=74.0
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCc------------------------------------ccHhhHHHHH
Q 043488 112 NPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTS------------------------------------RDKYNIGILF 155 (409)
Q Consensus 112 ~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~------------------------------------~~~~~~~~ll 155 (409)
+|+.|+...+-..++.+.|.+|||-||-+-..++ .....+..|-
T Consensus 439 ~pe~r~~i~~i~~dla~~~~~dGilf~Dd~~l~d~ed~s~~a~~~~~~~g~~~~~~~~~~~~~~~~~wt~~k~~~l~~f~ 518 (671)
T PRK14582 439 DDRVRAQVGMLYEDLAGHAAFDGILFHDDAVLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDFT 518 (671)
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEecccccccccccCCHHHHHHHHHcCCCcchhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 4666665555556666668999999986533210 0112456788
Q ss_pred HHHHHHHHHHhhcCCCCceeEEEEEeecCcccccCC---C--ChhHHhccccEEEeeccCCCCCCCCCCCCCCCcCCCCC
Q 043488 156 KEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAA---Y--PVDSIRQYLNWVHVITTEYSSPTWQNFTGAHAALYDPN 230 (409)
Q Consensus 156 ~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~~~~~~~~---y--~~~~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~ 230 (409)
.+|++.++.... +++...--+.+.+-....+ | ++....+..||+.+|+.-|... ...+.+
T Consensus 519 ~~l~~~v~~~~~-----~~~~tarni~a~~~l~p~~e~w~aQ~l~~~~~~yD~~a~mampyme~----~~~~~~------ 583 (671)
T PRK14582 519 LELSARVKAIRG-----PQVKTARNIFALPVIQPESEAWFAQNLDDFLKSYDWTAPMAMPLMEG----VAEKSS------ 583 (671)
T ss_pred HHHHHHHHhhcC-----ccceeeccccccccCChhHHHHHHhHHHHHHhhcchhhhhcchhhhc----cCcccH------
Confidence 888888887531 0122222222222221111 2 6778888899999999554422 111111
Q ss_pred CCCcHHHHHHHHHHcCCCCCceEEecce
Q 043488 231 SVSNTEYGITEWIEEGLSADKLVLCLPF 258 (409)
Q Consensus 231 ~~~~~~~~v~~~~~~g~p~~KivlGlp~ 258 (409)
..+....++...+.-...+|+|+-+..
T Consensus 584 -~~wl~~l~~~v~~~~~~~~k~vfelq~ 610 (671)
T PRK14582 584 -DAWLIQLVNQVKNIPGALDKTIFELQA 610 (671)
T ss_pred -HHHHHHHHHHHHhcCCcccceEEEeec
Confidence 125556666555554567999988754
No 56
>PF15102 TMEM154: TMEM154 protein family
Probab=73.27 E-value=2.6 Score=35.46 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=20.3
Q ss_pred eeEeeehH-HHHHHHHHHHHHHHHHhhhccccC
Q 043488 377 LLWAIVLP-ITTACILLIGFLLYYYCWMKNLKL 408 (409)
Q Consensus 377 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 408 (409)
++ .|++| ++.+++||+.+++.++|..|+.|-
T Consensus 58 iL-mIlIP~VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 58 IL-MILIPLVLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred EE-EEeHHHHHHHHHHHHHHHheeEEeecccCC
Confidence 66 78888 555566666666666666666553
No 57
>PHA02819 hypothetical protein; Provisional
Probab=72.74 E-value=5.1 Score=29.05 Aligned_cols=17 Identities=6% Similarity=0.022 Sum_probs=11.8
Q ss_pred CCCchhHHHHHHHhhhc
Q 043488 354 SDHYWMLSQAAAEEDKR 370 (409)
Q Consensus 354 ~Dd~~~L~~a~~~~~~~ 370 (409)
-||++.-++.+++....
T Consensus 17 DdDFnnFI~VVksVLtd 33 (71)
T PHA02819 17 DDDFNNFINVVKSVLNN 33 (71)
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 34588888888877543
No 58
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=72.58 E-value=6.9 Score=29.49 Aligned_cols=37 Identities=16% Similarity=0.361 Sum_probs=30.2
Q ss_pred CcccccccCC-hhHHHHHHHHHHHHHHHcCCCeEEEee
Q 043488 103 YSSYSSMAGN-PSFRKYFIDSSIKIARLYGFQGLDLSW 139 (409)
Q Consensus 103 ~~~~~~~~~~-~~~r~~fi~sii~~l~~~~~DGIdiDw 139 (409)
...+.....+ +..|+.+++.+++.+..-.+|||-+|-
T Consensus 38 ~~~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn 75 (79)
T PF14885_consen 38 PGHYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADN 75 (79)
T ss_pred CceeeeccCCcchHHHHHHHHHHHHHhcCccceeeeec
Confidence 4445444555 999999999999999988999999884
No 59
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=72.15 E-value=36 Score=38.74 Aligned_cols=84 Identities=11% Similarity=0.139 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEcC-CCCC-------CCc-------------cc---ccccCChhHHHHHHHHHHHHHH
Q 043488 73 KQFSNFTDTVKIKNPSITTLLSIGG-GNNP-------NYS-------------SY---SSMAGNPSFRKYFIDSSIKIAR 128 (409)
Q Consensus 73 ~~~~~~~~~lk~~~p~~kvllsiGG-~~~~-------~~~-------------~~---~~~~~~~~~r~~fi~sii~~l~ 128 (409)
..|+.+++.+|++ |++|++-+=- .... ... .+ ..-..++..|+-+++++.-|++
T Consensus 555 ~EfK~LV~alH~~--GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ 632 (1111)
T TIGR02102 555 AEFKNLINEIHKR--GMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVD 632 (1111)
T ss_pred HHHHHHHHHHHHC--CCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 4688888888887 8999986411 0000 000 00 0112346778889999999999
Q ss_pred HcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHH
Q 043488 129 LYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALE 165 (409)
Q Consensus 129 ~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~ 165 (409)
+|++||+-||--.- -+. .++++++.++++.
T Consensus 633 ey~VDGFRfDl~g~---~d~----~~~~~~~~~l~~~ 662 (1111)
T TIGR02102 633 EFKVDGFRFDMMGD---HDA----ASIEIAYKEAKAI 662 (1111)
T ss_pred hcCCcEEEEecccc---CCH----HHHHHHHHHHHHh
Confidence 99999999997421 222 3455555555543
No 60
>PLN02877 alpha-amylase/limit dextrinase
Probab=71.96 E-value=29 Score=38.72 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHcCCCeEEEeeeccC
Q 043488 113 PSFRKYFIDSSIKIARLYGFQGLDLSWNQAN 143 (409)
Q Consensus 113 ~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~ 143 (409)
+--|+-+++++.-|+++|++||+-||--...
T Consensus 534 ~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i 564 (970)
T PLN02877 534 YMVDRLIVDDLLNWAVNYKVDGFRFDLMGHL 564 (970)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEccccc
Confidence 4567888999999999999999999986544
No 61
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=71.68 E-value=8.6 Score=40.65 Aligned_cols=82 Identities=18% Similarity=0.136 Sum_probs=36.9
Q ss_pred HHHHHHHhhCCCcEEEEEE---cCCCCCCCcccccccCChhHHHHHHHHHHHHH-HHcCCCeEEEeeeccCCcccHhhHH
Q 043488 77 NFTDTVKIKNPSITTLLSI---GGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIA-RLYGFQGLDLSWNQANTSRDKYNIG 152 (409)
Q Consensus 77 ~~~~~lk~~~p~~kvllsi---GG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l-~~~~~DGIdiDwE~p~~~~~~~~~~ 152 (409)
.+++.+|++||++|+...= -||-. +. +..-..++...... +++++ -.+...|+|||+-.+-+ ++..=.
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~-~g--~~~~~~~~~~~a~Y---~~~wl~ga~~~~gl~idYvg~~N--Er~~~~ 187 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVG-NG--WNWPYDNPQLTAYY---VVSWLLGAKKTHGLDIDYVGIWN--ERGFDV 187 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGG-TT--SS-TTSSHHHHHHH---HHHHHHHHHHHH-----EE-S-T--TS---H
T ss_pred hhHHHHHhhCCCCeEEEeccCCCcccc-CC--CCCcccchhhhhHH---HHHHHHHHHHHhCCCceEechhh--ccCCCh
Confidence 4667899999999988543 34443 11 11111122222222 33433 22233466788765532 333334
Q ss_pred HHHHHHHHHHHHHh
Q 043488 153 ILFKEWRAAVALEA 166 (409)
Q Consensus 153 ~ll~~Lr~~l~~~~ 166 (409)
..+|.||..|+.++
T Consensus 188 ~~ik~lr~~l~~~g 201 (669)
T PF02057_consen 188 NYIKWLRKALNSNG 201 (669)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhcc
Confidence 78899999998764
No 62
>PHA02650 hypothetical protein; Provisional
Probab=71.54 E-value=5.8 Score=29.45 Aligned_cols=16 Identities=6% Similarity=-0.010 Sum_probs=12.0
Q ss_pred CCchhHHHHHHHhhhc
Q 043488 355 DHYWMLSQAAAEEDKR 370 (409)
Q Consensus 355 Dd~~~L~~a~~~~~~~ 370 (409)
||++..++.+++....
T Consensus 18 dDFnnFI~VVkSVLtD 33 (81)
T PHA02650 18 DDFNNFIDVVKSVLSD 33 (81)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4588888888888554
No 63
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=71.35 E-value=18 Score=32.83 Aligned_cols=44 Identities=20% Similarity=0.422 Sum_probs=30.0
Q ss_pred HhhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccC
Q 043488 83 KIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQAN 143 (409)
Q Consensus 83 k~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~ 143 (409)
.....+..++++|+|.. + +.|++ ..+.+.+.|||||+|+.-.|.
T Consensus 49 ~~~~~~~p~~~qi~g~~-------------~---~~~~~-aa~~~~~aG~d~ieln~g~p~ 92 (231)
T cd02801 49 TRNPEERPLIVQLGGSD-------------P---ETLAE-AAKIVEELGADGIDLNMGCPS 92 (231)
T ss_pred ccCccCCCEEEEEcCCC-------------H---HHHHH-HHHHHHhcCCCEEEEeCCCCH
Confidence 34456789999999743 2 34543 445556689999999976553
No 64
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=71.08 E-value=1.5 Score=30.28 Aligned_cols=25 Identities=28% Similarity=0.639 Sum_probs=20.0
Q ss_pred ccceeEeeehHHHHHHHHHHHHHHHH
Q 043488 374 NKRLLWAIVLPITTACILLIGFLLYY 399 (409)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (409)
.+++. .|.||+++++.+++.+.+|+
T Consensus 27 ~~kv~-tVVlP~l~~~~~~Ivv~vy~ 51 (56)
T PF15012_consen 27 QQKVF-TVVLPTLAAVFLFIVVFVYL 51 (56)
T ss_pred HHhhe-eEehhHHHHHHHHHhheeEE
Confidence 44677 89999999988888777664
No 65
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=71.05 E-value=9.5 Score=36.88 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=25.3
Q ss_pred ccEEEEEEEEEeCCCeE----Ee-cCCcchhHHHHHHHHHHhhCCCcEEEEEE
Q 043488 48 FTHLMCGFADVNSTSYE----LS-LSPSDEKQFSNFTDTVKIKNPSITTLLSI 95 (409)
Q Consensus 48 ~Thii~~f~~i~~~~~~----~~-~~~~~~~~~~~~~~~lk~~~p~~kvllsi 95 (409)
.--|+.....+++.+.. .. .++.....++++++.+|+. +.|+++-+
T Consensus 47 ~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~--g~~~~~Ql 97 (327)
T cd02803 47 VGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAH--GAKIFAQL 97 (327)
T ss_pred CcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhC--CCHhhHHh
Confidence 44556666666665421 11 1222445677777777776 56666544
No 66
>PHA02975 hypothetical protein; Provisional
Probab=69.79 E-value=7 Score=28.22 Aligned_cols=17 Identities=0% Similarity=-0.128 Sum_probs=13.0
Q ss_pred CCchhHHHHHHHhhhcc
Q 043488 355 DHYWMLSQAAAEEDKRN 371 (409)
Q Consensus 355 Dd~~~L~~a~~~~~~~~ 371 (409)
||++.-++.+++....+
T Consensus 18 dDF~nFI~vVksVLtdk 34 (69)
T PHA02975 18 SDFEDFIDTIMHVLTGK 34 (69)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 45888888888886554
No 67
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=69.75 E-value=20 Score=34.91 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEeeec
Q 043488 116 RKYFIDSSIKIARLYGFQGLDLSWNQ 141 (409)
Q Consensus 116 r~~fi~sii~~l~~~~~DGIdiDwE~ 141 (409)
.+.|++.. +.+++.|||||+|+--+
T Consensus 148 i~~~~~aA-~ra~~aGfDgVeih~a~ 172 (338)
T cd04733 148 IDRFAHAA-RLAQEAGFDGVQIHAAH 172 (338)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEchhh
Confidence 45666544 45677899999998654
No 68
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=69.70 E-value=32 Score=34.25 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCC
Q 043488 73 KQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANT 144 (409)
Q Consensus 73 ~~~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~ 144 (409)
+.+.+.+..+|++.|++.++.||.|... + +.+. .+++.+++.|.|+++|++-.|..
T Consensus 98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~s------------~---~~~~-~~a~~~e~~GaD~iELNiSCPn~ 153 (385)
T PLN02495 98 ETMLAEFKQLKEEYPDRILIASIMEEYN------------K---DAWE-EIIERVEETGVDALEINFSCPHG 153 (385)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEccCCCC------------H---HHHH-HHHHHHHhcCCCEEEEECCCCCC
Confidence 3333334567777788999999955221 1 2333 34556677899999999987764
No 69
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=68.99 E-value=26 Score=34.87 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEE--c-CCCCCCCc-----------c---------cccccCCh----hHHHHHHHHHH
Q 043488 72 EKQFSNFTDTVKIKNPSITTLLSI--G-GGNNPNYS-----------S---------YSSMAGNP----SFRKYFIDSSI 124 (409)
Q Consensus 72 ~~~~~~~~~~lk~~~p~~kvllsi--G-G~~~~~~~-----------~---------~~~~~~~~----~~r~~fi~sii 124 (409)
.+.++.+++.+|++ +.++++-+ + |... ... . .... .+. +-++.|++..
T Consensus 82 i~~~k~l~davh~~--G~~i~~QL~H~~Gr~~-~~~~~~~~~~~~ps~~~~~~~~~~~p~~-mt~~eI~~ii~~f~~AA- 156 (382)
T cd02931 82 IRTAKEMTERVHAY--GTKIFLQLTAGFGRVC-IPGFLGEDKPVAPSPIPNRWLPEITCRE-LTTEEVETFVGKFGESA- 156 (382)
T ss_pred hHHHHHHHHHHHHc--CCEEEEEccCcCCCcc-CccccCCCCccCCCCCCCCcCCCCCCCc-CCHHHHHHHHHHHHHHH-
Confidence 35677777777776 78888877 2 3221 000 0 0011 122 3345566544
Q ss_pred HHHHHcCCCeEEEee
Q 043488 125 KIARLYGFQGLDLSW 139 (409)
Q Consensus 125 ~~l~~~~~DGIdiDw 139 (409)
+.+++-|||||+|+.
T Consensus 157 ~ra~~AGfDgVEih~ 171 (382)
T cd02931 157 VIAKEAGFDGVEIHA 171 (382)
T ss_pred HHHHHcCCCEEEEec
Confidence 455567999999998
No 70
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=67.79 E-value=14 Score=36.04 Aligned_cols=47 Identities=9% Similarity=0.074 Sum_probs=27.5
Q ss_pred CccEEEEEEEEEeCCCeE----Eec-CCcchhHHHHHHHHHHhhCCCcEEEEEE
Q 043488 47 LFTHLMCGFADVNSTSYE----LSL-SPSDEKQFSNFTDTVKIKNPSITTLLSI 95 (409)
Q Consensus 47 ~~Thii~~f~~i~~~~~~----~~~-~~~~~~~~~~~~~~lk~~~p~~kvllsi 95 (409)
.+--|+.....+++.+.. ..+ ++...+.++++.+.+|+. +.|+++-+
T Consensus 46 g~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~--G~~~~~QL 97 (336)
T cd02932 46 GAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQ--GAKIGIQL 97 (336)
T ss_pred CCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhc--CCcEEEEc
Confidence 455566666666665421 111 233445677777777776 67888765
No 71
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=67.71 E-value=34 Score=29.90 Aligned_cols=184 Identities=19% Similarity=0.144 Sum_probs=102.4
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCcccccCC
Q 043488 112 NPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAA 191 (409)
Q Consensus 112 ~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~~~~~~~~ 191 (409)
+|-+|+.-+..+. -|.|=| |-.+|...+-..||.=.++++|+..++. ..+|.++.-.|.... .
T Consensus 6 SPin~eEA~eAie-----GGAdIi--DVKNP~EGSLGANFPWvIr~i~Ev~p~d---------~~vSAT~GDvpYKPG-T 68 (235)
T COG1891 6 SPINREEAIEAIE-----GGADII--DVKNPAEGSLGANFPWVIREIREVVPED---------QEVSATVGDVPYKPG-T 68 (235)
T ss_pred ccCCHHHHHHHhh-----CCCceE--eccCcccCcccCCChHHHHHHHHhCccc---------eeeeeeecCCCCCCc-h
Confidence 4555555443332 255544 4456665456689999999999887764 467887654433221 1
Q ss_pred CChh---HHhccccEEEeeccCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHH-----cCCCCCceEEecceeeEEe
Q 043488 192 YPVD---SIRQYLNWVHVITTEYSSPTWQNFTGAHAALYDPNSVSNTEYGITEWIE-----EGLSADKLVLCLPFYGYAW 263 (409)
Q Consensus 192 y~~~---~l~~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~-----~g~p~~KivlGlp~yG~~~ 263 (409)
.-+. ....-+||+-|--|+.. +-+++++.+.. +.+.++|+++.- -|+-.+
T Consensus 69 ~slAalGaav~GaDYiKVGLYg~k---------------------n~~eA~e~m~~vvrAVkd~d~~k~VVAa-GYaDa~ 126 (235)
T COG1891 69 ASLAALGAAVAGADYIKVGLYGTK---------------------NEEEALEVMKNVVRAVKDFDPSKKVVAA-GYADAH 126 (235)
T ss_pred HHHHHHHhHhhCCceEEEeecccc---------------------cHHHHHHHHHHHHHHHhccCCCceEEec-cccchh
Confidence 1222 23345899999888532 33444433321 347788888653 233222
Q ss_pred eeccCCCCCCCCCccCCCCCCCCcccHHHHHHhhhcCCCCeEEEEeccceeEEEEeCcEEEEECCHHHHHHHHHHHHHcC
Q 043488 264 TLVKPEDNGIGAAATGPALHDDGLVTYKEVKNHIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVAYAKEKK 343 (409)
Q Consensus 264 ~~~~~~~~~~~~~~~g~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~ydd~~Sl~~K~~~~~~~g 343 (409)
+. |.++--.+.+.....| .....-++. .-+++..+-|.+.+-+..-++.++++|
T Consensus 127 Rv--------------------gsv~Pl~~P~vaa~ag--~DvaMvDTa----iKDGkslFdfm~~e~l~eFvd~Ah~hG 180 (235)
T COG1891 127 RV--------------------GSVSPLLLPEVAAEAG--ADVAMVDTA----IKDGKSLFDFMDEEELEEFVDLAHEHG 180 (235)
T ss_pred hc--------------------cCcCccccHHHHHhcC--CCEEEEecc----cccchhHHhhhcHHHHHHHHHHHHHcc
Confidence 21 1222223333333334 222211110 115677777999999999999999999
Q ss_pred CceEEEEeccCCCchhH
Q 043488 344 LRGYYVWEVSSDHYWML 360 (409)
Q Consensus 344 lgGi~iW~l~~Dd~~~L 360 (409)
|--.-.=++..+|...|
T Consensus 181 L~~AlAGs~~~ehlp~l 197 (235)
T COG1891 181 LEVALAGSLKFEHLPIL 197 (235)
T ss_pred hHHHhccccccccchHH
Confidence 75444445556655444
No 72
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=66.97 E-value=67 Score=34.97 Aligned_cols=66 Identities=12% Similarity=0.188 Sum_probs=44.8
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcC-------------CCCCCCcc-----------cc---cccCChhHHHHHHHHH
Q 043488 71 DEKQFSNFTDTVKIKNPSITTLLSIGG-------------GNNPNYSS-----------YS---SMAGNPSFRKYFIDSS 123 (409)
Q Consensus 71 ~~~~~~~~~~~lk~~~p~~kvllsiGG-------------~~~~~~~~-----------~~---~~~~~~~~r~~fi~si 123 (409)
....++.+++.++++ |++|++-+-- +..+.... |. --..+++-|+-+++++
T Consensus 298 tp~dlk~LVd~aH~~--GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~ 375 (758)
T PLN02447 298 TPEDLKYLIDKAHSL--GLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNL 375 (758)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHH
Confidence 456788999888887 8999986511 00000000 10 0123467888899999
Q ss_pred HHHHHHcCCCeEEEe
Q 043488 124 IKIARLYGFQGLDLS 138 (409)
Q Consensus 124 i~~l~~~~~DGIdiD 138 (409)
.-|+++|++||+-||
T Consensus 376 ~~Wl~ey~IDGfRfD 390 (758)
T PLN02447 376 RWWLEEYKFDGFRFD 390 (758)
T ss_pred HHHHHHhCccccccc
Confidence 999999999999998
No 73
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=66.69 E-value=1e+02 Score=30.07 Aligned_cols=47 Identities=6% Similarity=0.094 Sum_probs=29.6
Q ss_pred CccEEEEEEEEEeCCCe----EEec-CCcchhHHHHHHHHHHhhCCCcEEEEEE
Q 043488 47 LFTHLMCGFADVNSTSY----ELSL-SPSDEKQFSNFTDTVKIKNPSITTLLSI 95 (409)
Q Consensus 47 ~~Thii~~f~~i~~~~~----~~~~-~~~~~~~~~~~~~~lk~~~p~~kvllsi 95 (409)
.+--|+.....+++.+. .+.+ ++..-..++++++.+|+. |.|+++-|
T Consensus 49 G~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~--Ga~i~~QL 100 (341)
T PF00724_consen 49 GAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLADAVHAH--GAKIIAQL 100 (341)
T ss_dssp TTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHHHHHHT--TSEEEEEE
T ss_pred CCceEEecccccccccccccccchhchhhHHHHHHHHHHHHHhc--Cccceeec
Confidence 35667777777776542 1222 222445677777788886 78998766
No 74
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=64.54 E-value=46 Score=31.77 Aligned_cols=58 Identities=10% Similarity=0.123 Sum_probs=36.5
Q ss_pred CcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcC-CCeEEEeeeccCCc-------ccHhhHHHHHHHHH
Q 043488 88 SITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYG-FQGLDLSWNQANTS-------RDKYNIGILFKEWR 159 (409)
Q Consensus 88 ~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~-~DGIdiDwE~p~~~-------~~~~~~~~ll~~Lr 159 (409)
+..++++|+|.+ .+.|++ +.+.++++| +|||+|+.--|... .+.+....+++++|
T Consensus 91 ~~p~i~si~g~~----------------~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr 153 (301)
T PRK07259 91 DTPIIANVAGST----------------EEEYAE-VAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVK 153 (301)
T ss_pred CCcEEEEeccCC----------------HHHHHH-HHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence 578999998732 245654 455568888 99999988655431 12334445555555
Q ss_pred HHH
Q 043488 160 AAV 162 (409)
Q Consensus 160 ~~l 162 (409)
+..
T Consensus 154 ~~~ 156 (301)
T PRK07259 154 EVV 156 (301)
T ss_pred Hhc
Confidence 544
No 75
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=64.16 E-value=66 Score=31.75 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEeeec
Q 043488 116 RKYFIDSSIKIARLYGFQGLDLSWNQ 141 (409)
Q Consensus 116 r~~fi~sii~~l~~~~~DGIdiDwE~ 141 (409)
.+.|++.. ..+++-|||||+|+--+
T Consensus 143 i~~f~~AA-~~a~~aGfDgVeih~ah 167 (361)
T cd04747 143 IAAFARAA-ADARRLGFDGIELHGAH 167 (361)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEeccc
Confidence 34566444 45566799999999765
No 76
>PRK03705 glycogen debranching enzyme; Provisional
Probab=63.56 E-value=32 Score=36.85 Aligned_cols=66 Identities=12% Similarity=0.226 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEcC-CC------CC-------CCc------------ccc-----cccCChhHHHHHHH
Q 043488 73 KQFSNFTDTVKIKNPSITTLLSIGG-GN------NP-------NYS------------SYS-----SMAGNPSFRKYFID 121 (409)
Q Consensus 73 ~~~~~~~~~lk~~~p~~kvllsiGG-~~------~~-------~~~------------~~~-----~~~~~~~~r~~fi~ 121 (409)
..++.+++.++++ |++|++-+=- .. .+ ++. .++ --..++.-|+-+++
T Consensus 242 ~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid 319 (658)
T PRK03705 242 DEFRDAVKALHKA--GIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAID 319 (658)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHH
Confidence 4688888888877 8999986510 00 00 000 010 11246788899999
Q ss_pred HHHHHHHHcCCCeEEEeee
Q 043488 122 SSIKIARLYGFQGLDLSWN 140 (409)
Q Consensus 122 sii~~l~~~~~DGIdiDwE 140 (409)
++.-|+++||+||+-||--
T Consensus 320 ~l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 320 CLRYWVETCHVDGFRFDLA 338 (658)
T ss_pred HHHHHHHHhCCCEEEEEcH
Confidence 9999999999999999974
No 77
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=63.46 E-value=79 Score=31.35 Aligned_cols=90 Identities=10% Similarity=0.083 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhCCCcEEEEEEcCC----CCC-----CCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCC-
Q 043488 75 FSNFTDTVKIKNPSITTLLSIGGG----NNP-----NYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANT- 144 (409)
Q Consensus 75 ~~~~~~~lk~~~p~~kvllsiGG~----~~~-----~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~- 144 (409)
-..|++.+|++ ++..++++-.. ... ....-..-+ .+...+.|++=+++.++.+.=.||.|+.=.|.+
T Consensus 106 QrwfL~~Ak~r--GV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NL-k~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NE 182 (384)
T PF14587_consen 106 QRWFLKAAKER--GVNIFEAFSNSPPWWMTKNGSASGGDDGSDNL-KPDNYDAFADYLADVVKHYKKWGINFDYISPFNE 182 (384)
T ss_dssp HHHHHHHHHHT--T---EEEE-SSS-GGGSSSSSSB-S-SSS-SS--TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-
T ss_pred HHHHHHHHHHc--CCCeEEEeecCCCHHHhcCCCCCCCCcccccc-ChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCC
Confidence 34466666766 78888877421 000 001111222 367788999988888888877899998754432
Q ss_pred -------------cccHhhHHHHHHHHHHHHHHHhh
Q 043488 145 -------------SRDKYNIGILFKEWRAAVALEAR 167 (409)
Q Consensus 145 -------------~~~~~~~~~ll~~Lr~~l~~~~~ 167 (409)
+-+.+....+++.|+.+|++.+.
T Consensus 183 P~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL 218 (384)
T PF14587_consen 183 PQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGL 218 (384)
T ss_dssp TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-
T ss_pred CCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 22455678999999999999875
No 78
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=62.53 E-value=86 Score=30.57 Aligned_cols=91 Identities=13% Similarity=0.093 Sum_probs=47.1
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEc---CCCCCCCcccccccCC------hhHHHHHHHHHHHHHHHcCCCeEEEeeec
Q 043488 71 DEKQFSNFTDTVKIKNPSITTLLSIG---GGNNPNYSSYSSMAGN------PSFRKYFIDSSIKIARLYGFQGLDLSWNQ 141 (409)
Q Consensus 71 ~~~~~~~~~~~lk~~~p~~kvllsiG---G~~~~~~~~~~~~~~~------~~~r~~fi~sii~~l~~~~~DGIdiDwE~ 141 (409)
+......+.+++|+. |+||||-+- =|.+|..+...+...+ .+....+..++++.|+. .|+..||=+
T Consensus 56 ~~~~~~~~akrak~~--Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~---~G~~pd~VQ 130 (332)
T PF07745_consen 56 DLEDVIALAKRAKAA--GMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA---AGVTPDMVQ 130 (332)
T ss_dssp SHHHHHHHHHHHHHT--T-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH---TT--ESEEE
T ss_pred CHHHHHHHHHHHHHC--CCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH---CCCCccEEE
Confidence 334444555556665 899999984 2333333332222222 23334556666666666 467788866
Q ss_pred cCC------------cccHhhHHHHHHHHHHHHHHHh
Q 043488 142 ANT------------SRDKYNIGILFKEWRAAVALEA 166 (409)
Q Consensus 142 p~~------------~~~~~~~~~ll~~Lr~~l~~~~ 166 (409)
.++ ..+..++..|++.-.++.++..
T Consensus 131 VGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~ 167 (332)
T PF07745_consen 131 VGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVD 167 (332)
T ss_dssp ESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHS
T ss_pred eCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcC
Confidence 553 2455677777777677776643
No 79
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=61.32 E-value=57 Score=32.02 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=38.0
Q ss_pred CcchhHHHHHHHHHHhhCCCcEEEEEE--cCCCCCCCc-----------c---------cccccCC---hhHHHHHHHHH
Q 043488 69 PSDEKQFSNFTDTVKIKNPSITTLLSI--GGGNNPNYS-----------S---------YSSMAGN---PSFRKYFIDSS 123 (409)
Q Consensus 69 ~~~~~~~~~~~~~lk~~~p~~kvllsi--GG~~~~~~~-----------~---------~~~~~~~---~~~r~~fi~si 123 (409)
+.....++++++.+|++ +.|+++-+ +|... ... . ....++. .+-.+.|++..
T Consensus 74 d~~i~~~~~l~~~vh~~--G~~i~~QL~h~G~~~-~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA 150 (353)
T cd04735 74 DSDIPGLRKLAQAIKSK--GAKAILQIFHAGRMA-NPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEAT 150 (353)
T ss_pred hhhhHHHHHHHHHHHhC--CCeEEEEecCCCCCC-CccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHH
Confidence 33456778888888876 67888766 22211 000 0 0011111 22345666555
Q ss_pred HHHHHHcCCCeEEEeee
Q 043488 124 IKIARLYGFQGLDLSWN 140 (409)
Q Consensus 124 i~~l~~~~~DGIdiDwE 140 (409)
.. +++-|||||+|+--
T Consensus 151 ~~-a~~aGfDgVeih~a 166 (353)
T cd04735 151 RR-AIEAGFDGVEIHGA 166 (353)
T ss_pred HH-HHHcCCCEEEEccc
Confidence 44 56679999999963
No 80
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=60.77 E-value=37 Score=32.78 Aligned_cols=94 Identities=21% Similarity=0.166 Sum_probs=50.2
Q ss_pred CcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCC-----------cccHhhHHHHHH
Q 043488 88 SITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANT-----------SRDKYNIGILFK 156 (409)
Q Consensus 88 ~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~-----------~~~~~~~~~ll~ 156 (409)
...+.+.|.|.+ + +.|++.. ..+.+.|+|||||+.--|.. -.+.+....+++
T Consensus 62 e~p~~vQl~g~~-------------p---~~~~~aA-~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~ 124 (312)
T PRK10550 62 GTLVRIQLLGQY-------------P---QWLAENA-ARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 (312)
T ss_pred CCcEEEEeccCC-------------H---HHHHHHH-HHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHH
Confidence 356778888733 2 3555433 34566799999999987752 023334445566
Q ss_pred HHHHHHHHHhhcCCCCceeEEEEEeecCcccccCCCChhH-Hhc-cccEEEee
Q 043488 157 EWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDS-IRQ-YLNWVHVI 207 (409)
Q Consensus 157 ~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~~~~~~~~y~~~~-l~~-~vD~v~vm 207 (409)
++|+++... +-+|+-+...........++.. +.+ -+|.+.|-
T Consensus 125 avr~~~~~~---------~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh 168 (312)
T PRK10550 125 AMREAVPAH---------LPVTVKVRLGWDSGERKFEIADAVQQAGATELVVH 168 (312)
T ss_pred HHHHhcCCC---------cceEEEEECCCCCchHHHHHHHHHHhcCCCEEEEC
Confidence 666554321 3466666533211111112222 222 28888774
No 81
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=60.67 E-value=97 Score=29.58 Aligned_cols=68 Identities=19% Similarity=0.177 Sum_probs=42.2
Q ss_pred HHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCc----------ccH
Q 043488 79 TDTVKIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTS----------RDK 148 (409)
Q Consensus 79 ~~~lk~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~----------~~~ 148 (409)
+..+++..++..++.++-|... + +.|++ +++.+++.++|+|||++-.|... .+.
T Consensus 90 ~~~~~~~~~~~p~i~si~G~~~------------~---~~~~~-~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~ 153 (299)
T cd02940 90 IRELKKDFPDKILIASIMCEYN------------K---EDWTE-LAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDP 153 (299)
T ss_pred HHHHHhhCCCCeEEEEecCCCC------------H---HHHHH-HHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCH
Confidence 3345554456778899977311 1 34553 45566778999999999987641 234
Q ss_pred hhHHHHHHHHHHHH
Q 043488 149 YNIGILFKEWRAAV 162 (409)
Q Consensus 149 ~~~~~ll~~Lr~~l 162 (409)
+.+.++++.+|+..
T Consensus 154 ~~~~~iv~~v~~~~ 167 (299)
T cd02940 154 ELVEEICRWVREAV 167 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 45556666665543
No 82
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=60.66 E-value=64 Score=30.62 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=29.9
Q ss_pred CCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCC
Q 043488 87 PSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANT 144 (409)
Q Consensus 87 p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~ 144 (409)
.+.+++++|+|.. .+.|+ .+++.+++.|+|+|+|++-.|..
T Consensus 88 ~~~p~ivsi~g~~----------------~~~~~-~~a~~~~~~G~d~iElN~~cP~~ 128 (296)
T cd04740 88 FGTPVIASIAGST----------------VEEFV-EVAEKLADAGADAIELNISCPNV 128 (296)
T ss_pred CCCcEEEEEecCC----------------HHHHH-HHHHHHHHcCCCEEEEECCCCCC
Confidence 4688999998732 24555 45556677899999999877653
No 83
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=60.25 E-value=40 Score=36.42 Aligned_cols=50 Identities=12% Similarity=0.085 Sum_probs=34.1
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCc--ccHhhHHHHHHHHHH
Q 043488 111 GNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTS--RDKYNIGILFKEWRA 160 (409)
Q Consensus 111 ~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~--~~~~~~~~ll~~Lr~ 160 (409)
.++..|+-+++++.-|+++||+||+-||--..... .+......|+++|++
T Consensus 314 ~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 314 SHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQ 365 (688)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHh
Confidence 35777888899999999999999999997432210 111123456777765
No 84
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=59.14 E-value=67 Score=32.30 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=41.3
Q ss_pred HHHhhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCc----------ccHhh
Q 043488 81 TVKIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTS----------RDKYN 150 (409)
Q Consensus 81 ~lk~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~----------~~~~~ 150 (409)
.+++..++..++++|.|... + +.++ ..++.+++.|+|+|||+.-.|... .+.+.
T Consensus 92 ~~~~~~~~~p~i~si~g~~~------------~---~~~~-~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~ 155 (420)
T PRK08318 92 RVKRDYPDRALIASIMVECN------------E---EEWK-EIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPEL 155 (420)
T ss_pred HHHhhCCCceEEEEeccCCC------------H---HHHH-HHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHH
Confidence 45554456678899987411 1 2333 455566778999999999988621 24455
Q ss_pred HHHHHHHHHHH
Q 043488 151 IGILFKEWRAA 161 (409)
Q Consensus 151 ~~~ll~~Lr~~ 161 (409)
+..+++.+++.
T Consensus 156 ~~~i~~~v~~~ 166 (420)
T PRK08318 156 VEMYTRWVKRG 166 (420)
T ss_pred HHHHHHHHHhc
Confidence 56666666554
No 85
>PHA03054 IMV membrane protein; Provisional
Probab=59.04 E-value=13 Score=27.03 Aligned_cols=28 Identities=7% Similarity=0.007 Sum_probs=16.7
Q ss_pred CCceEEEEeccCCCchhHHHHHHHhhhcc
Q 043488 343 KLRGYYVWEVSSDHYWMLSQAAAEEDKRN 371 (409)
Q Consensus 343 glgGi~iW~l~~Dd~~~L~~a~~~~~~~~ 371 (409)
|+-|+++=+- -||++..++.+++....+
T Consensus 7 ~ifGvF~ss~-d~Df~~Fi~vV~sVl~dk 34 (72)
T PHA03054 7 AIFGVFMGSP-EDDLTDFIEIVKSVLSDE 34 (72)
T ss_pred HHHHHhhCCc-hHHHHHHHHHHHHHHcCC
Confidence 3445543322 345888888888876544
No 86
>PLN02411 12-oxophytodienoate reductase
Probab=58.32 E-value=28 Score=34.80 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=16.2
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEE
Q 043488 71 DEKQFSNFTDTVKIKNPSITTLLSI 95 (409)
Q Consensus 71 ~~~~~~~~~~~lk~~~p~~kvllsi 95 (409)
..+.++++++.+|++ +.|+++-|
T Consensus 85 ~i~~~~~l~~avH~~--G~~i~~QL 107 (391)
T PLN02411 85 QVEAWKKVVDAVHAK--GSIIFCQL 107 (391)
T ss_pred HHHHHHHHHHHHHhc--CCEEEEec
Confidence 345667777777776 78888766
No 87
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=57.48 E-value=52 Score=31.75 Aligned_cols=32 Identities=22% Similarity=0.177 Sum_probs=27.4
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCeEEEeeecc
Q 043488 111 GNPSFRKYFIDSSIKIARLYGFQGLDLSWNQA 142 (409)
Q Consensus 111 ~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p 142 (409)
.+|+.|+-|.+.+.+.+.+.|+||+=+|+-.|
T Consensus 129 tnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 129 TNPEAREYYWKQLKKNYYDKGVDAWWLDAAEP 160 (319)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 57888888988888889999999999998544
No 88
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=57.34 E-value=68 Score=30.92 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=28.9
Q ss_pred hCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccC
Q 043488 85 KNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQAN 143 (409)
Q Consensus 85 ~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~ 143 (409)
...+..+++.|+|.+ + +.|+ ..++.+++.|+|||||+.--|.
T Consensus 59 ~~~~~p~i~ql~g~~-------------~---~~~~-~aa~~~~~~G~d~IelN~gcP~ 100 (319)
T TIGR00737 59 AEDETPISVQLFGSD-------------P---DTMA-EAAKINEELGADIIDINMGCPV 100 (319)
T ss_pred CCccceEEEEEeCCC-------------H---HHHH-HHHHHHHhCCCCEEEEECCCCH
Confidence 344677888998843 2 3444 3445667889999999987663
No 89
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=56.30 E-value=64 Score=31.36 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCccc----
Q 043488 72 EKQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRD---- 147 (409)
Q Consensus 72 ~~~~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~---- 147 (409)
.+.+.+.+..++++. ++.++++|+|.+. +.++ .+++.+++.|+|+|+|++-.|....+
T Consensus 86 ~d~~~~~i~~~~~~~-~~pvi~sI~g~~~----------------~e~~-~~a~~~~~agad~ielN~scpp~~~~~~g~ 147 (334)
T PRK07565 86 PEEYLELIRRAKEAV-DIPVIASLNGSSA----------------GGWV-DYARQIEQAGADALELNIYYLPTDPDISGA 147 (334)
T ss_pred HHHHHHHHHHHHHhc-CCcEEEEeccCCH----------------HHHH-HHHHHHHHcCCCEEEEeCCCCCCCCCCccc
Confidence 344444444455443 5889999988331 1333 45556677799999999865432111
Q ss_pred --HhhHHHHHHHHHHHH
Q 043488 148 --KYNIGILFKEWRAAV 162 (409)
Q Consensus 148 --~~~~~~ll~~Lr~~l 162 (409)
.+.+..+++++++..
T Consensus 148 ~~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 148 EVEQRYLDILRAVKSAV 164 (334)
T ss_pred cHHHHHHHHHHHHHhcc
Confidence 123555666665543
No 90
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=55.92 E-value=47 Score=32.87 Aligned_cols=91 Identities=18% Similarity=0.270 Sum_probs=47.6
Q ss_pred ccEEEEEEEEEeCCCeE-----E-ecCCcchhHHHHHHHHHHhhCCCcEEEEEE--cCCCCCC---------Ccc-----
Q 043488 48 FTHLMCGFADVNSTSYE-----L-SLSPSDEKQFSNFTDTVKIKNPSITTLLSI--GGGNNPN---------YSS----- 105 (409)
Q Consensus 48 ~Thii~~f~~i~~~~~~-----~-~~~~~~~~~~~~~~~~lk~~~p~~kvllsi--GG~~~~~---------~~~----- 105 (409)
+--|+.....+.+++.. . ..++...+.++++++.+|++ +.|+++-+ +|..... ++.
T Consensus 52 ~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~ 129 (370)
T cd02929 52 WGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTDAVHKH--GALAGIELWHGGAHAPNRESRETPLGPSQLPSEF 129 (370)
T ss_pred ceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHHHHHHHC--CCeEEEecccCCCCCCccCCCCCccCCCCCCCCc
Confidence 44555666666655421 1 11222445677777778776 78888766 2321100 000
Q ss_pred ------cccccCC---hhHHHHHHHHHHHHHHHcCCCeEEEeeec
Q 043488 106 ------YSSMAGN---PSFRKYFIDSSIKIARLYGFQGLDLSWNQ 141 (409)
Q Consensus 106 ------~~~~~~~---~~~r~~fi~sii~~l~~~~~DGIdiDwE~ 141 (409)
....++. .+-++.|++.. +.+++-|||||+|+--+
T Consensus 130 ~~~~~~~p~~mt~~eI~~ii~~f~~AA-~ra~~aGfDgVEih~ah 173 (370)
T cd02929 130 PTGGPVQAREMDKDDIKRVRRWYVDAA-LRARDAGFDIVYVYAAH 173 (370)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHHH-HHHHHcCCCEEEEcccc
Confidence 0011111 12345666544 45566799999999765
No 91
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=55.08 E-value=1e+02 Score=30.81 Aligned_cols=116 Identities=14% Similarity=0.174 Sum_probs=64.6
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcCCC-CCCCccc----------------------ccccCChhHHHHHHHHHHHHH
Q 043488 71 DEKQFSNFTDTVKIKNPSITTLLSIGGGN-NPNYSSY----------------------SSMAGNPSFRKYFIDSSIKIA 127 (409)
Q Consensus 71 ~~~~~~~~~~~lk~~~p~~kvllsiGG~~-~~~~~~~----------------------~~~~~~~~~r~~fi~sii~~l 127 (409)
-+..+..+++.++++ |+|.-|-+.-.. .++|+.+ .-=+++|+.|+.+.+.+.+++
T Consensus 102 FP~Gl~~l~~~i~~~--Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll 179 (394)
T PF02065_consen 102 FPNGLKPLADYIHSL--GMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLL 179 (394)
T ss_dssp STTHHHHHHHHHHHT--T-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHC--CCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHH
Confidence 345688888888887 677766541100 0011111 111357888999999999999
Q ss_pred HHcCCCeEEEeeeccCC----cc---cHhhHH----HHHHHHHHHHHHHhhcCCCCceeEEEEEeecCcccccCCCChhH
Q 043488 128 RLYGFQGLDLSWNQANT----SR---DKYNIG----ILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDS 196 (409)
Q Consensus 128 ~~~~~DGIdiDwE~p~~----~~---~~~~~~----~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~~~~~~~~y~~~~ 196 (409)
+++|+|.|-+|+..... +. ....++ .++++||++++ ++.+......+ .+.|+ .
T Consensus 180 ~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P----------~v~iE~CssGG-----~R~D~-g 243 (394)
T PF02065_consen 180 REWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFP----------DVLIENCSSGG-----GRFDP-G 243 (394)
T ss_dssp HHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTT----------TSEEEE-BTTB-----TTTSH-H
T ss_pred HhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCC----------CcEEEeccCCC-----Ccccc-c
Confidence 99999999999974321 11 123334 35555555544 46666665422 23564 4
Q ss_pred HhccccEE
Q 043488 197 IRQYLNWV 204 (409)
Q Consensus 197 l~~~vD~v 204 (409)
+..+.+.+
T Consensus 244 ~l~~~~~~ 251 (394)
T PF02065_consen 244 MLYYTPQS 251 (394)
T ss_dssp HHCCSSEE
T ss_pred hheecccc
Confidence 56666664
No 92
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=54.24 E-value=52 Score=31.54 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=28.4
Q ss_pred cCChhHHHHHHHHHHHHHHHcCCCeEEEeeecc
Q 043488 110 AGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQA 142 (409)
Q Consensus 110 ~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p 142 (409)
..+|+.|+=+.+.+.+++.++|+||+=+|+-.|
T Consensus 134 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 134 FTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCc
Confidence 467899999998888888899999999999554
No 93
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=54.03 E-value=1.6e+02 Score=28.55 Aligned_cols=74 Identities=12% Similarity=0.052 Sum_probs=45.1
Q ss_pred HHHHHhhC-CCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCC-----cccHhhHH
Q 043488 79 TDTVKIKN-PSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANT-----SRDKYNIG 152 (409)
Q Consensus 79 ~~~lk~~~-p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~-----~~~~~~~~ 152 (409)
.+.+++.. .+..+++||+|... .. .++.-+.|++.+-++ .. ..|+++|++--|.. ..+.+.+.
T Consensus 118 ~~~l~~~~~~~~plivsi~g~~~---~~------~~~~~~d~~~~~~~~-~~-~ad~ielN~scP~~~g~~~~~~~~~~~ 186 (327)
T cd04738 118 AKRLKKRRPRGGPLGVNIGKNKD---TP------LEDAVEDYVIGVRKL-GP-YADYLVVNVSSPNTPGLRDLQGKEALR 186 (327)
T ss_pred HHHHHHhccCCCeEEEEEeCCCC---Cc------ccccHHHHHHHHHHH-Hh-hCCEEEEECCCCCCCccccccCHHHHH
Confidence 33344333 46889999998542 11 123334555444333 33 38999999976653 23456677
Q ss_pred HHHHHHHHHHH
Q 043488 153 ILFKEWRAAVA 163 (409)
Q Consensus 153 ~ll~~Lr~~l~ 163 (409)
.+++++|+...
T Consensus 187 ~iv~av~~~~~ 197 (327)
T cd04738 187 ELLTAVKEERN 197 (327)
T ss_pred HHHHHHHHHHh
Confidence 88888888775
No 94
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=53.76 E-value=97 Score=29.81 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcC-CCeEEEeeeccCCc------
Q 043488 73 KQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYG-FQGLDLSWNQANTS------ 145 (409)
Q Consensus 73 ~~~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~-~DGIdiDwE~p~~~------ 145 (409)
+.+.+.+..+++..++..++.||-|.+. +.+. .+.+.+++.+ .|+|+|+.--|..+
T Consensus 77 ~~~~~~i~~~~~~~~~~pvI~Si~G~~~----------------~~~~-~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g 139 (310)
T PRK02506 77 DYYLDYVLELQKKGPNKPHFLSVVGLSP----------------EETH-TILKKIQASDFNGLVELNLSCPNVPGKPQIA 139 (310)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEEeCcH----------------HHHH-HHHHHHhhcCCCCEEEEECCCCCCCCccccc
Confidence 3343334445555456888999877432 2222 3344456777 89999999877532
Q ss_pred ccHhhHHHHHHHHHHHH
Q 043488 146 RDKYNIGILFKEWRAAV 162 (409)
Q Consensus 146 ~~~~~~~~ll~~Lr~~l 162 (409)
.+.+.+..+++.+|+..
T Consensus 140 ~d~~~~~~i~~~v~~~~ 156 (310)
T PRK02506 140 YDFETTEQILEEVFTYF 156 (310)
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 13445566666666554
No 95
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=53.65 E-value=15 Score=28.02 Aligned_cols=24 Identities=17% Similarity=0.460 Sum_probs=17.6
Q ss_pred HHHHHHHH-HHHHHHHHHhhhcccc
Q 043488 384 PITTACIL-LIGFLLYYYCWMKNLK 407 (409)
Q Consensus 384 ~~~~~~~~-~~~~~~~~~~~~~~~~ 407 (409)
..+++|.+ ++..+.|++||.|.-|
T Consensus 36 ~~lvI~~iFil~VilwfvCC~kRkr 60 (94)
T PF05393_consen 36 WFLVICGIFILLVILWFVCCKKRKR 60 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566555 7788899999988644
No 96
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=53.17 E-value=76 Score=28.98 Aligned_cols=101 Identities=11% Similarity=0.071 Sum_probs=61.8
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCcccccCC
Q 043488 112 NPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAA 191 (409)
Q Consensus 112 ~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~~~~~~~~ 191 (409)
|.+....++..+.+... ..++-.|.|....+++.-...+++||+.|++.+. .+-+... .|-..
T Consensus 87 d~~~~adYl~~l~~aA~-----P~~L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~--------~v~iVAD----EWCNT 149 (248)
T PF07476_consen 87 DPDRMADYLAELEEAAA-----PFKLRIEGPMDAGSREAQIEALAELREELDRRGI--------NVEIVAD----EWCNT 149 (248)
T ss_dssp -HHHHHHHHHHHHHHHT-----TS-EEEE-SB--SSHHHHHHHHHHHHHHHHHCT----------EEEEE-----TT--S
T ss_pred CHHHHHHHHHHHHHhcC-----CCeeeeeCCcCCCChHHHHHHHHHHHHHHHhcCC--------CCeEEee----hhcCC
Confidence 55666666666666655 4467899999878888999999999999998763 2333221 22222
Q ss_pred C-ChhHHh--ccccEEEeeccCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHcCC
Q 043488 192 Y-PVDSIR--QYLNWVHVITTEYSSPTWQNFTGAHAALYDPNSVSNTEYGITEWIEEGL 247 (409)
Q Consensus 192 y-~~~~l~--~~vD~v~vm~YD~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~ 247 (409)
+ |+..+. +-+|.|.|.|=|+.|- .++-+++.+-.+.|+
T Consensus 150 ~eDI~~F~da~A~dmVQIKtPDLGgi------------------~ntieAvlyCk~~gv 190 (248)
T PF07476_consen 150 LEDIREFADAKAADMVQIKTPDLGGI------------------NNTIEAVLYCKEHGV 190 (248)
T ss_dssp HHHHHHHHHTT-SSEEEE-GGGGSST------------------HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhcCCcCEEEecCCCccch------------------hhHHHHHHHHHhcCC
Confidence 2 444443 5599999999998654 166777777777764
No 97
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=52.57 E-value=33 Score=33.55 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHcCCceEEEEeccCCCchhHHHHHHHhhhcccC
Q 043488 327 DDVEAVRVKVAYAKEKKLRGYYVWEVSSDHYWMLSQAAAEEDKRNRQ 373 (409)
Q Consensus 327 dd~~Sl~~K~~~~~~~glgGi~iW~l~~Dd~~~L~~a~~~~~~~~~~ 373 (409)
.|+++++..+++|+++|+-|+.+|--=.+....|-+.+...+..+..
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf~gk~lLe~p~~~~l~~~~~ 101 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYWFNGKRLLEKPLENLLASKEP 101 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeeecCCchHHHHHHHHHHhcCCC
Confidence 48999999999999999999999988887777777777666644333
No 98
>PHA02844 putative transmembrane protein; Provisional
Probab=51.59 E-value=20 Score=26.43 Aligned_cols=18 Identities=0% Similarity=0.012 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHHhhhcc
Q 043488 354 SDHYWMLSQAAAEEDKRN 371 (409)
Q Consensus 354 ~Dd~~~L~~a~~~~~~~~ 371 (409)
-||++..++.+++....+
T Consensus 17 DdDFnnFI~vVksVLtd~ 34 (75)
T PHA02844 17 NEDFNNFIDVVKSVLSDD 34 (75)
T ss_pred hHHHHHHHHHHHHHHcCC
Confidence 345888888888886554
No 99
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=50.94 E-value=42 Score=27.37 Aligned_cols=74 Identities=9% Similarity=0.033 Sum_probs=51.2
Q ss_pred CcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHhh
Q 043488 88 SITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEAR 167 (409)
Q Consensus 88 ~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~~ 167 (409)
|.-=++-.|..-+ . -+-...|.. -+.=.+.+.+++++.|++.=-++++|... .+.+.|+..++++-+.+.+.++
T Consensus 53 GaDGV~v~GC~~g--e--CHy~~GN~k-a~rR~~~lke~l~elgie~eRv~~~wiSa-~E~ekf~e~~~efv~~i~~lGp 126 (132)
T COG1908 53 GADGVLVAGCKIG--E--CHYISGNYK-AKRRMELLKELLKELGIEPERVRVLWISA-AEGEKFAETINEFVERIKELGP 126 (132)
T ss_pred CCCeEEEeccccc--c--eeeeccchH-HHHHHHHHHHHHHHhCCCcceEEEEEEeh-hhHHHHHHHHHHHHHHHHHhCC
Confidence 5555666676443 1 111122221 12334567888999999999999998886 7889999999999999988765
No 100
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=50.51 E-value=47 Score=32.83 Aligned_cols=23 Identities=9% Similarity=0.184 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEc
Q 043488 72 EKQFSNFTDTVKIKNPSITTLLSIG 96 (409)
Q Consensus 72 ~~~~~~~~~~lk~~~p~~kvllsiG 96 (409)
...++.+++.+|++ +.|+++=|.
T Consensus 82 i~~~~~vt~avH~~--G~~i~iQL~ 104 (363)
T COG1902 82 IPGLKRLTEAVHAH--GAKIFIQLW 104 (363)
T ss_pred hHHHHHHHHHHHhc--CCeEEEEec
Confidence 56677888888887 678887774
No 101
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=49.15 E-value=86 Score=31.25 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=51.4
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCccccc-------ccCChhHHHHH---HHHHHHHHHHcCCCeEEEeee
Q 043488 71 DEKQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSSYSS-------MAGNPSFRKYF---IDSSIKIARLYGFQGLDLSWN 140 (409)
Q Consensus 71 ~~~~~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~~~-------~~~~~~~r~~f---i~sii~~l~~~~~DGIdiDwE 140 (409)
....+.++.+++|++ |+|+-+-...+.- ....+.. -...+...+-+ ..++.+++.+||-|.+=+|+.
T Consensus 126 krDiv~el~~A~rk~--Glk~G~Y~S~~DW-~~p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~ 202 (384)
T smart00812 126 KRDLVGELADAVRKR--GLKFGLYHSLFDW-FNPLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGG 202 (384)
T ss_pred CcchHHHHHHHHHHc--CCeEEEEcCHHHh-CCCccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 456678888888888 7988876654221 0111110 01112223333 689999999999999999988
Q ss_pred ccCCcccHhhHHHHHHHHHH
Q 043488 141 QANTSRDKYNIGILFKEWRA 160 (409)
Q Consensus 141 ~p~~~~~~~~~~~ll~~Lr~ 160 (409)
++.. ........|++.+|+
T Consensus 203 ~~~~-~~~~~~~~l~~~~~~ 221 (384)
T smart00812 203 WEAP-DDYWRSKEFLAWLYN 221 (384)
T ss_pred CCCc-cchhcHHHHHHHHHH
Confidence 7654 222233445555543
No 102
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=49.13 E-value=11 Score=26.46 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=13.9
Q ss_pred CchhhHHHHHHHHHHhcc
Q 043488 1 MASKIIILVLYIFIFSES 18 (409)
Q Consensus 1 M~~~~~~~~l~~~~~~~~ 18 (409)
||+|.+++.++|+++...
T Consensus 1 MA~Kl~vialLC~aLva~ 18 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAI 18 (65)
T ss_pred CcchhhHHHHHHHHHHHH
Confidence 999998877777776653
No 103
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=47.91 E-value=1.6e+02 Score=28.77 Aligned_cols=85 Identities=12% Similarity=0.196 Sum_probs=50.0
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcCC--CCCCCcccccccC--------Chh----H-HHHHHHHHHHHHHHcCCCeE
Q 043488 71 DEKQFSNFTDTVKIKNPSITTLLSIGGG--NNPNYSSYSSMAG--------NPS----F-RKYFIDSSIKIARLYGFQGL 135 (409)
Q Consensus 71 ~~~~~~~~~~~lk~~~p~~kvllsiGG~--~~~~~~~~~~~~~--------~~~----~-r~~fi~sii~~l~~~~~DGI 135 (409)
......++.+++|++ |+|+.+-...+ ..+ .+..-.. .+. . .+....++.+++++|..|.+
T Consensus 136 krDiv~El~~A~rk~--Glk~G~Y~S~~dw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~l 210 (346)
T PF01120_consen 136 KRDIVGELADACRKY--GLKFGLYYSPWDWHHP---DYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDIL 210 (346)
T ss_dssp TS-HHHHHHHHHHHT--T-EEEEEEESSSCCCT---TTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEE
T ss_pred CCCHHHHHHHHHHHc--CCeEEEEecchHhcCc---ccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceE
Confidence 345678888888888 78888766543 331 1111110 011 1 22556789999999999999
Q ss_pred EEeeeccCCcccHhhHHHHHHHHHHH
Q 043488 136 DLSWNQANTSRDKYNIGILFKEWRAA 161 (409)
Q Consensus 136 diDwE~p~~~~~~~~~~~ll~~Lr~~ 161 (409)
=+|..++.. .+...+..+.+.+|+.
T Consensus 211 WfDg~~~~~-~~~~~~~~~~~~i~~~ 235 (346)
T PF01120_consen 211 WFDGGWPDP-DEDWDSAELYNWIRKL 235 (346)
T ss_dssp EEESTTSCC-CTHHHHHHHHHHHHHH
T ss_pred EecCCCCcc-ccccCHHHHHHHHHHh
Confidence 999877653 3334444555544433
No 104
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=47.64 E-value=1.5e+02 Score=28.89 Aligned_cols=75 Identities=13% Similarity=0.074 Sum_probs=46.4
Q ss_pred HHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCC-----cccHhhHH
Q 043488 78 FTDTVKIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANT-----SRDKYNIG 152 (409)
Q Consensus 78 ~~~~lk~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~-----~~~~~~~~ 152 (409)
+.+.+++...++.+++||+|... ......-+.|++.+.++ .. +.|+++++.--|.. .++.+.+.
T Consensus 127 ~~~~l~~~~~~~pvivsI~~~~~---------~~~~~~~~d~~~~~~~~-~~-~ad~lelN~scP~~~g~~~~~~~~~~~ 195 (344)
T PRK05286 127 LAERLKKAYRGIPLGINIGKNKD---------TPLEDAVDDYLICLEKL-YP-YADYFTVNISSPNTPGLRDLQYGEALD 195 (344)
T ss_pred HHHHHHHhcCCCcEEEEEecCCC---------CCcccCHHHHHHHHHHH-Hh-hCCEEEEEccCCCCCCcccccCHHHHH
Confidence 33334332256889999998432 11122345666444443 44 59999999977754 23556777
Q ss_pred HHHHHHHHHHH
Q 043488 153 ILFKEWRAAVA 163 (409)
Q Consensus 153 ~ll~~Lr~~l~ 163 (409)
.+++++|+..+
T Consensus 196 eiv~aVr~~~~ 206 (344)
T PRK05286 196 ELLAALKEAQA 206 (344)
T ss_pred HHHHHHHHHHh
Confidence 88888888776
No 105
>PHA02692 hypothetical protein; Provisional
Probab=47.27 E-value=32 Score=25.05 Aligned_cols=28 Identities=4% Similarity=0.049 Sum_probs=17.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHhhhccc
Q 043488 344 LRGYYVWEVSSDHYWMLSQAAAEEDKRNR 372 (409)
Q Consensus 344 lgGi~iW~l~~Dd~~~L~~a~~~~~~~~~ 372 (409)
+-|+++=+- -||++.-++.+++....+.
T Consensus 8 ifGVFmss~-DdDF~~Fi~vVksVLtDk~ 35 (70)
T PHA02692 8 VFGSFLSNS-DEDFEEFLNIVRTVMTEKP 35 (70)
T ss_pred HHHhhcCCC-HHHHHHHHHHHHHHHcCCC
Confidence 345543222 2358888888888866554
No 106
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=46.76 E-value=30 Score=32.20 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=28.6
Q ss_pred EEEeeccCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHcCCCCCceEEecceeeEE
Q 043488 203 WVHVITTEYSSPTWQNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGYA 262 (409)
Q Consensus 203 ~v~vm~YD~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~p~~KivlGlp~yG~~ 262 (409)
-+|+|+|||.|. +..+|-++-.. -..+++.+.+.+....-++++|+| ||++
T Consensus 88 n~nv~~~DYSGy--G~S~G~psE~n---~y~Di~avye~Lr~~~g~~~~Iil----~G~S 138 (258)
T KOG1552|consen 88 NCNVVSYDYSGY--GRSSGKPSERN---LYADIKAVYEWLRNRYGSPERIIL----YGQS 138 (258)
T ss_pred cceEEEEecccc--cccCCCccccc---chhhHHHHHHHHHhhcCCCceEEE----EEec
Confidence 579999999986 22333333321 112455555544433227888875 6654
No 107
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=46.46 E-value=1.4e+02 Score=29.44 Aligned_cols=46 Identities=11% Similarity=0.155 Sum_probs=25.6
Q ss_pred ccEEEEEEEEEeCCCeE----Eec-CCcchhHHHHHHHHHHhhCCCcEEEEEE
Q 043488 48 FTHLMCGFADVNSTSYE----LSL-SPSDEKQFSNFTDTVKIKNPSITTLLSI 95 (409)
Q Consensus 48 ~Thii~~f~~i~~~~~~----~~~-~~~~~~~~~~~~~~lk~~~p~~kvllsi 95 (409)
+--|+-....+++.+.. ..+ .+...+.++++++.+|++ +.|+++-+
T Consensus 49 ~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~lad~vH~~--Ga~i~~QL 99 (362)
T PRK10605 49 AGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAE--GGHIAVQL 99 (362)
T ss_pred CCEEEECceeeCcccccCCCCCcccCHHHHHHHHHHHHHHHhC--CCEEEEec
Confidence 33455555556555321 111 222345667777777776 78888776
No 108
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=46.38 E-value=1.6e+02 Score=28.07 Aligned_cols=59 Identities=17% Similarity=0.051 Sum_probs=37.0
Q ss_pred CCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHc--CCCeEEEeeeccCCc------ccHhhHHHHHHHH
Q 043488 87 PSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLY--GFQGLDLSWNQANTS------RDKYNIGILFKEW 158 (409)
Q Consensus 87 p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~--~~DGIdiDwE~p~~~------~~~~~~~~ll~~L 158 (409)
++..++++|+|. . +.+++.+.++.+.. +.|+|||+.--|..+ .+.+.+..+++.+
T Consensus 90 ~~~pvivsi~g~-~----------------~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v 152 (294)
T cd04741 90 SAKPFFISVTGS-A----------------EDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAV 152 (294)
T ss_pred cCCeEEEECCCC-H----------------HHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHH
Confidence 567889999873 2 34454444433333 699999999877631 2345566666666
Q ss_pred HHHH
Q 043488 159 RAAV 162 (409)
Q Consensus 159 r~~l 162 (409)
|+..
T Consensus 153 ~~~~ 156 (294)
T cd04741 153 KAAY 156 (294)
T ss_pred HHhc
Confidence 6554
No 109
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=45.79 E-value=2.5e+02 Score=26.09 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccC
Q 043488 74 QFSNFTDTVKIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQAN 143 (409)
Q Consensus 74 ~~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~ 143 (409)
...++++.+|++ |+|+++.+-- .-|+-|.+.+.+++.+.|+||+=+|+-.|.
T Consensus 67 dp~~~i~~l~~~--g~~~~~~~~P----------------~v~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 67 NPKSMIDELHDN--GVKLVLWIDP----------------YIREWWAEVVKKLLVSLGVDGFWTDMGEPS 118 (265)
T ss_pred CHHHHHHHHHHC--CCEEEEEeCh----------------hHHHHHHHHHHHhhccCCCCEEeccCCCCC
Confidence 346777888886 7999998642 117777777777778899999999996554
No 110
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=44.36 E-value=19 Score=31.90 Aligned_cols=29 Identities=24% Similarity=0.611 Sum_probs=17.9
Q ss_pred cceeEeeehHHHHHHHHHHHHHHHHHhhhcc
Q 043488 375 KRLLWAIVLPITTACILLIGFLLYYYCWMKN 405 (409)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (409)
..+...|.||+++++++++.. ++.+|||+
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~--~~~~~~R~ 184 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMY--GFFFWNRK 184 (189)
T ss_pred cceeEEEEccHHHHHHHHHHH--hhheeecc
Confidence 444558999999887544433 33445654
No 111
>PRK03995 hypothetical protein; Provisional
Probab=43.34 E-value=57 Score=30.71 Aligned_cols=69 Identities=13% Similarity=0.278 Sum_probs=41.8
Q ss_pred CCcEEEEEEcCCCCCCCcccccc-----------cCChhHHHHHHHHHHHHHHHc--CCCeEEEeeeccCCcccHhhHHH
Q 043488 87 PSITTLLSIGGGNNPNYSSYSSM-----------AGNPSFRKYFIDSSIKIARLY--GFQGLDLSWNQANTSRDKYNIGI 153 (409)
Q Consensus 87 p~~kvllsiGG~~~~~~~~~~~~-----------~~~~~~r~~fi~sii~~l~~~--~~DGIdiDwE~p~~~~~~~~~~~ 153 (409)
...++++.|||.-. ...|..+ +.+-..-.-=-+.+.+.+++. ++|.+-|||....+ .++..+..
T Consensus 179 ~~~~~~iGiGGgHY--apr~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks~~~~~~~~id~K~~k~-~~r~~i~~ 255 (267)
T PRK03995 179 EKFKPAIGIGGGHY--APKFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKSTPEIDRIVIDWKGVKS-EDRERIIE 255 (267)
T ss_pred cCCCEEEEECCCCc--cHHHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhccCCCCEEEEecCCCCH-HHHHHHHH
Confidence 57899999999765 3333333 322111000011345555664 68999999987765 67777777
Q ss_pred HHHHH
Q 043488 154 LFKEW 158 (409)
Q Consensus 154 ll~~L 158 (409)
+++++
T Consensus 256 ~le~~ 260 (267)
T PRK03995 256 FLEEL 260 (267)
T ss_pred HHHHC
Confidence 77665
No 112
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=43.33 E-value=13 Score=29.94 Aligned_cols=18 Identities=28% Similarity=0.566 Sum_probs=14.1
Q ss_pred HHHHHHcCCCCCceEEec
Q 043488 239 ITEWIEEGLSADKLVLCL 256 (409)
Q Consensus 239 v~~~~~~g~p~~KivlGl 256 (409)
.+.++++|+|++.||||+
T Consensus 80 a~eLve~GVpk~dIVLgF 97 (111)
T PF08869_consen 80 AEELVEAGVPKEDIVLGF 97 (111)
T ss_dssp HHHHHHTT--GGGEEETT
T ss_pred HHHHHHcCCCHHHEEEcc
Confidence 367899999999999997
No 113
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=43.28 E-value=69 Score=31.20 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=28.9
Q ss_pred CCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccC
Q 043488 86 NPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQAN 143 (409)
Q Consensus 86 ~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~ 143 (409)
.....+.+.|+|.+ + +.|+ ..++.+++.|||||||+.--|.
T Consensus 62 ~~e~p~~vQl~g~~-------------p---~~~~-~aA~~~~~~g~d~IdlN~gCP~ 102 (333)
T PRK11815 62 PEEHPVALQLGGSD-------------P---ADLA-EAAKLAEDWGYDEINLNVGCPS 102 (333)
T ss_pred CCCCcEEEEEeCCC-------------H---HHHH-HHHHHHHhcCCCEEEEcCCCCH
Confidence 33567888888743 2 3455 3556778889999999987664
No 114
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=43.11 E-value=77 Score=30.66 Aligned_cols=60 Identities=20% Similarity=0.290 Sum_probs=37.8
Q ss_pred CCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCc-----------ccHhhHHHH
Q 043488 86 NPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTS-----------RDKYNIGIL 154 (409)
Q Consensus 86 ~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~-----------~~~~~~~~l 154 (409)
.....+.+.|+|.+ + +.|+ ..++.+.++|+|||||+.--|... .+.+....+
T Consensus 52 ~~e~p~~vQl~g~~-------------p---~~~~-~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~i 114 (318)
T TIGR00742 52 PEESPVALQLGGSD-------------P---NDLA-KCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADC 114 (318)
T ss_pred CCCCcEEEEEccCC-------------H---HHHH-HHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHH
Confidence 34566788888743 2 2344 455667778999999999776531 233344566
Q ss_pred HHHHHHHH
Q 043488 155 FKEWRAAV 162 (409)
Q Consensus 155 l~~Lr~~l 162 (409)
+++++++.
T Consensus 115 v~av~~~~ 122 (318)
T TIGR00742 115 VKAMQEAV 122 (318)
T ss_pred HHHHHHHh
Confidence 66666554
No 115
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=42.96 E-value=94 Score=32.13 Aligned_cols=90 Identities=12% Similarity=0.073 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhCCCcEEEEEEc---CCCCCCCccc---cccc--CChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCC-c
Q 043488 75 FSNFTDTVKIKNPSITTLLSIG---GGNNPNYSSY---SSMA--GNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANT-S 145 (409)
Q Consensus 75 ~~~~~~~lk~~~p~~kvllsiG---G~~~~~~~~~---~~~~--~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~-~ 145 (409)
...+++.+++.+|++|++.|-. +|... +..+ ..+- ..++.++.+++=++++++.|.=.||+|+---+.+ |
T Consensus 155 ~ip~ik~a~~~~~~lki~aSpWSpP~WMKt-n~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP 233 (496)
T PF02055_consen 155 KIPLIKEALAINPNLKIFASPWSPPAWMKT-NGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEP 233 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEES---GGGBT-TSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSC
T ss_pred HHHHHHHHHHhCCCcEEEEecCCCCHHHcc-CCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCC
Confidence 3467777888899999998863 33331 1111 1111 1346789999999999999999999998643221 1
Q ss_pred --------------ccHhhHHHHHHH-HHHHHHHH
Q 043488 146 --------------RDKYNIGILFKE-WRAAVALE 165 (409)
Q Consensus 146 --------------~~~~~~~~ll~~-Lr~~l~~~ 165 (409)
-..+....|++. |+-+|++.
T Consensus 234 ~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~ 268 (496)
T PF02055_consen 234 DNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKA 268 (496)
T ss_dssp CGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTS
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 123345678876 88888865
No 116
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=42.90 E-value=86 Score=28.12 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=45.0
Q ss_pred cccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCc
Q 043488 106 YSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSP 185 (409)
Q Consensus 106 ~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~~ 185 (409)
.+-|+.+|. ++ ++.+.+.|.|-|-+.+|.. .....+++.+|+. + ....+++-+..
T Consensus 62 vHLMv~~P~---~~----i~~~~~~g~~~i~~H~E~~------~~~~~~i~~ik~~----g--------~k~GialnP~T 116 (201)
T PF00834_consen 62 VHLMVENPE---RY----IEEFAEAGADYITFHAEAT------EDPKETIKYIKEA----G--------IKAGIALNPET 116 (201)
T ss_dssp EEEESSSGG---GH----HHHHHHHT-SEEEEEGGGT------TTHHHHHHHHHHT----T--------SEEEEEE-TTS
T ss_pred EEeeeccHH---HH----HHHHHhcCCCEEEEcccch------hCHHHHHHHHHHh----C--------CCEEEEEECCC
Confidence 455676764 33 4445566999999999922 1233566666543 3 35566665433
Q ss_pred ccccCCCChhHHhccccEEEeeccC
Q 043488 186 LSTAAAYPVDSIRQYLNWVHVITTE 210 (409)
Q Consensus 186 ~~~~~~y~~~~l~~~vD~v~vm~YD 210 (409)
... .+..+.+.+|+|.+|+-+
T Consensus 117 ~~~----~~~~~l~~vD~VlvMsV~ 137 (201)
T PF00834_consen 117 PVE----ELEPYLDQVDMVLVMSVE 137 (201)
T ss_dssp -GG----GGTTTGCCSSEEEEESS-
T ss_pred Cch----HHHHHhhhcCEEEEEEec
Confidence 232 245677789999999965
No 117
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=42.72 E-value=79 Score=33.60 Aligned_cols=67 Identities=13% Similarity=0.245 Sum_probs=46.5
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEE---------------cCCCCC-C-------CcccccccC---ChhHHHHHHHHHH
Q 043488 71 DEKQFSNFTDTVKIKNPSITTLLSI---------------GGGNNP-N-------YSSYSSMAG---NPSFRKYFIDSSI 124 (409)
Q Consensus 71 ~~~~~~~~~~~lk~~~p~~kvllsi---------------GG~~~~-~-------~~~~~~~~~---~~~~r~~fi~sii 124 (409)
.++.++.|+..++++ ++-|+|-+ .|.... . ...|...+- .++-|.-|+.++.
T Consensus 212 tPedfk~fVD~aH~~--GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal 289 (628)
T COG0296 212 TPEDFKALVDAAHQA--GIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANAL 289 (628)
T ss_pred CHHHHHHHHHHHHHc--CCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHH
Confidence 577899999988888 79999854 111000 0 112222222 3577888999999
Q ss_pred HHHHHcCCCeEEEee
Q 043488 125 KIARLYGFQGLDLSW 139 (409)
Q Consensus 125 ~~l~~~~~DGIdiDw 139 (409)
-++++|++||+-+|-
T Consensus 290 ~Wl~~yHiDGlRvDA 304 (628)
T COG0296 290 YWLEEYHIDGLRVDA 304 (628)
T ss_pred HHHHHhCCcceeeeh
Confidence 999999999998883
No 118
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=42.57 E-value=41 Score=32.84 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEeeec
Q 043488 116 RKYFIDSSIKIARLYGFQGLDLSWNQ 141 (409)
Q Consensus 116 r~~fi~sii~~l~~~~~DGIdiDwE~ 141 (409)
.+.|++. .+.+++-|||||+|+.-+
T Consensus 151 i~~f~~a-A~~a~~aGfDgVeih~ah 175 (338)
T cd02933 151 VADFRQA-ARNAIEAGFDGVEIHGAN 175 (338)
T ss_pred HHHHHHH-HHHHHHcCCCEEEEcccc
Confidence 3455543 355566799999999765
No 119
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=40.82 E-value=52 Score=32.51 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=48.9
Q ss_pred CCcEEEEEE-------cCCCCCCCccccccc-CChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCC-cccHhhHHHHHHH
Q 043488 87 PSITTLLSI-------GGGNNPNYSSYSSMA-GNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANT-SRDKYNIGILFKE 157 (409)
Q Consensus 87 p~~kvllsi-------GG~~~~~~~~~~~~~-~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~-~~~~~~~~~ll~~ 157 (409)
.|+.|+=.| || +.+.+..|+ .++.-.=-+++.+++..+-|||||.-|+=|-.+. +...+++..|+.-
T Consensus 139 NGVPvlGt~Ffppk~ygg----~~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFINqET~G~~~~~a~~M~~f~ly 214 (553)
T COG4724 139 NGVPVLGTLFFPPKNYGG----DQEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFINQETTGDVKPLAEKMRQFMLY 214 (553)
T ss_pred CCCceeeeeecChhhcCc----hHHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEecccccCCCcchHHHHHHHHHH
Confidence 378888655 33 234455555 3344444689999999999999999999886553 4556677777776
Q ss_pred HHHH
Q 043488 158 WRAA 161 (409)
Q Consensus 158 Lr~~ 161 (409)
+++.
T Consensus 215 ~ke~ 218 (553)
T COG4724 215 SKEY 218 (553)
T ss_pred HHhc
Confidence 6644
No 120
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=40.22 E-value=23 Score=22.90 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=13.5
Q ss_pred ceeEeeehHHHHHHHHHHH
Q 043488 376 RLLWAIVLPITTACILLIG 394 (409)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~ 394 (409)
-+...+.+|.++.+++|+.
T Consensus 12 aIa~~VvVPV~vI~~vl~~ 30 (40)
T PF08693_consen 12 AIAVGVVVPVGVIIIVLGA 30 (40)
T ss_pred EEEEEEEechHHHHHHHHH
Confidence 6777788998887555443
No 121
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=39.92 E-value=2.9e+02 Score=25.07 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=30.5
Q ss_pred HHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeecc
Q 043488 78 FTDTVKIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQA 142 (409)
Q Consensus 78 ~~~~lk~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p 142 (409)
+.+.++....++.+++++--... ...| -.+++.+ ++-+...+...+.|-|||+++.+
T Consensus 47 ~~~~~~~~~~~~piI~T~R~~~e--GG~~---~~~~~~~---~~ll~~~~~~~~~d~vDiEl~~~ 103 (228)
T TIGR01093 47 LIEQLSQLRPDKPLIFTIRTISE--GGKF---PGNEEEY---LEELKRAADSPGPDFVDIELFLP 103 (228)
T ss_pred HHHHHHHhcCCCcEEEEECChhh--CCCC---CCCHHHH---HHHHHHHHHhCCCCEEEEEccCC
Confidence 33333332356899999853221 1112 1223333 33334444667889999998743
No 122
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=38.82 E-value=24 Score=31.94 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=25.4
Q ss_pred cceeEeeehHHHHHHHHHHHHHHHHHhhhcccc
Q 043488 375 KRLLWAIVLPITTACILLIGFLLYYYCWMKNLK 407 (409)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (409)
++..| ..+.+++++++-|.++++|+-.||+++
T Consensus 213 k~s~w-f~~~miI~v~~sFVsMiliiqifkkl~ 244 (244)
T KOG2678|consen 213 KLSYW-FYITMIIFVILSFVSMILIIQIFKKLN 244 (244)
T ss_pred hhhHH-HHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34664 567778888888999999999999875
No 123
>PLN03244 alpha-amylase; Provisional
Probab=38.76 E-value=97 Score=33.88 Aligned_cols=66 Identities=12% Similarity=0.195 Sum_probs=45.3
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcCC-CCCC-----------C-cccc--------------cccCChhHHHHHHHHH
Q 043488 71 DEKQFSNFTDTVKIKNPSITTLLSIGGG-NNPN-----------Y-SSYS--------------SMAGNPSFRKYFIDSS 123 (409)
Q Consensus 71 ~~~~~~~~~~~lk~~~p~~kvllsiGG~-~~~~-----------~-~~~~--------------~~~~~~~~r~~fi~si 123 (409)
....++.++..++++ |++|+|-+--. ..++ . ..|. --..+++-|+-+++++
T Consensus 439 TPeDLK~LVD~aH~~--GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna 516 (872)
T PLN03244 439 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNL 516 (872)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHH
Confidence 456788999888887 89999875210 0000 0 0111 1123467888899999
Q ss_pred HHHHHHcCCCeEEEe
Q 043488 124 IKIARLYGFQGLDLS 138 (409)
Q Consensus 124 i~~l~~~~~DGIdiD 138 (409)
.-|+++|++||+-+|
T Consensus 517 ~yWleEyhIDGFRfD 531 (872)
T PLN03244 517 NWWITEYQIDGFQFH 531 (872)
T ss_pred HHHHHHhCcCcceee
Confidence 999999999999998
No 124
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=38.38 E-value=42 Score=21.38 Aligned_cols=28 Identities=25% Similarity=0.609 Sum_probs=17.3
Q ss_pred eeehHHHHHHHHHHHHHHHHHhhhcccc
Q 043488 380 AIVLPITTACILLIGFLLYYYCWMKNLK 407 (409)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (409)
.|+.-.++-+++++..++||.|--|..+
T Consensus 7 aIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3455555555666666777777776554
No 125
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=38.34 E-value=2.7e+02 Score=27.15 Aligned_cols=78 Identities=12% Similarity=0.037 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCC-----cccHh
Q 043488 75 FSNFTDTVKIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANT-----SRDKY 149 (409)
Q Consensus 75 ~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~-----~~~~~ 149 (409)
...+.+.+++...++.+.++||+... ......-+.|++.+-++ .. ..|.++|+.--|.. .++.+
T Consensus 121 ~~~~l~~i~~~~~~~~i~vsi~~~~~---------~~~~~~~~dy~~~~~~~-~~-~ad~iElNlScPn~~~~~~~~~~~ 189 (335)
T TIGR01036 121 ADVLVERLKRARYKGPIGINIGKNKD---------TPSEDAKEDYAACLRKL-GP-LADYLVVNVSSPNTPGLRDLQYKA 189 (335)
T ss_pred HHHHHHHHhhccCCCcEEEEEeCCCC---------CCcccCHHHHHHHHHHH-hh-hCCEEEEEccCCCCCCcccccCHH
Confidence 34445555555557889999987431 11223345666554444 33 38999999976653 23556
Q ss_pred hHHHHHHHHHHHHH
Q 043488 150 NIGILFKEWRAAVA 163 (409)
Q Consensus 150 ~~~~ll~~Lr~~l~ 163 (409)
.+..+++.+|+..+
T Consensus 190 ~~~~i~~~V~~~~~ 203 (335)
T TIGR01036 190 ELRDLLTAVKQEQD 203 (335)
T ss_pred HHHHHHHHHHHHHH
Confidence 77788888887776
No 126
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=37.81 E-value=3.9e+02 Score=26.00 Aligned_cols=89 Identities=8% Similarity=0.096 Sum_probs=47.3
Q ss_pred CccEEEEEEEEEeCCCe----EEec-CCcchhHHHHHHHHHHhhCCCcEEEEEEc--CCCCCCCc---------------
Q 043488 47 LFTHLMCGFADVNSTSY----ELSL-SPSDEKQFSNFTDTVKIKNPSITTLLSIG--GGNNPNYS--------------- 104 (409)
Q Consensus 47 ~~Thii~~f~~i~~~~~----~~~~-~~~~~~~~~~~~~~lk~~~p~~kvllsiG--G~~~~~~~--------------- 104 (409)
.+.-|+.....+++++. .+.. .++..+.++++++.+|+. +.++++-+. |... ...
T Consensus 50 G~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~--G~~i~~QL~H~G~~~-~~~~~~~~ps~~~~~~~~ 126 (337)
T PRK13523 50 QVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDH--GAKAAIQLAHAGRKA-ELEGDIVAPSAIPFDEKS 126 (337)
T ss_pred CCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhc--CCEEEEEccCCCCCC-CCCCCccCCCCCCCCCCC
Confidence 35555665555655532 1112 222345667777777775 788887762 3211 000
Q ss_pred ccccccCCh----hHHHHHHHHHHHHHHHcCCCeEEEeee
Q 043488 105 SYSSMAGNP----SFRKYFIDSSIKIARLYGFQGLDLSWN 140 (409)
Q Consensus 105 ~~~~~~~~~----~~r~~fi~sii~~l~~~~~DGIdiDwE 140 (409)
.....+ +. +-.+.|++.. +.+++-|||||+|+--
T Consensus 127 ~~p~~m-t~eeI~~ii~~f~~aA-~~a~~aGfDgVeih~a 164 (337)
T PRK13523 127 KTPVEM-TKEQIKETVLAFKQAA-VRAKEAGFDVIEIHGA 164 (337)
T ss_pred CCCCcC-CHHHHHHHHHHHHHHH-HHHHHcCCCEEEEccc
Confidence 000111 12 3345666544 5556679999999976
No 127
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=37.33 E-value=1.4e+02 Score=29.09 Aligned_cols=48 Identities=8% Similarity=0.121 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHcCCCeEEEeeeccCC----------cccHhhHHHHHHHHHHHHHH
Q 043488 117 KYFIDSSIKIARLYGFQGLDLSWNQANT----------SRDKYNIGILFKEWRAAVAL 164 (409)
Q Consensus 117 ~~fi~sii~~l~~~~~DGIdiDwE~p~~----------~~~~~~~~~ll~~Lr~~l~~ 164 (409)
..+++.++..+.+-|+.||.+||..-.. ..+.+.+..++..+++.+..
T Consensus 90 s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~~ 147 (345)
T COG0429 90 SPYARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWLKARFPP 147 (345)
T ss_pred CHHHHHHHHHHHhcCCeEEEEecccccCCcccCcceecccchhHHHHHHHHHHHhCCC
Confidence 3599999999999999999999985432 23456777788888776554
No 128
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=36.74 E-value=1.4e+02 Score=32.68 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEeee
Q 043488 116 RKYFIDSSIKIARLYGFQGLDLSWN 140 (409)
Q Consensus 116 r~~fi~sii~~l~~~~~DGIdiDwE 140 (409)
.+.|++... .+.+-|||||+|+--
T Consensus 550 i~~f~~aA~-~a~~aGfDgveih~a 573 (765)
T PRK08255 550 RDDFVAAAR-RAAEAGFDWLELHCA 573 (765)
T ss_pred HHHHHHHHH-HHHHcCCCEEEEecc
Confidence 455665444 445579999999976
No 129
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=36.64 E-value=34 Score=25.25 Aligned_cols=24 Identities=13% Similarity=0.390 Sum_probs=17.7
Q ss_pred ceeEeeehHHHHHHHHHHHHHHHH
Q 043488 376 RLLWAIVLPITTACILLIGFLLYY 399 (409)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~ 399 (409)
.++.+++.-++++|||+++..++.
T Consensus 30 ~avaVviPl~L~LCiLvl~yai~~ 53 (74)
T PF11857_consen 30 NAVAVVIPLVLLLCILVLIYAIFQ 53 (74)
T ss_pred eEEEEeHHHHHHHHHHHHHHHhhe
Confidence 444466677888999998877776
No 130
>PRK01060 endonuclease IV; Provisional
Probab=35.96 E-value=67 Score=30.04 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHh
Q 043488 120 IDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEA 166 (409)
Q Consensus 120 i~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~ 166 (409)
+...++.+.+.|||||+|.-+.|........-...++++|+.+.+.+
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~g 60 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYG 60 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcC
Confidence 45688999999999999987655421111112245777888887664
No 131
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=35.51 E-value=1.9e+02 Score=27.40 Aligned_cols=77 Identities=16% Similarity=0.281 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhH
Q 043488 72 EKQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNI 151 (409)
Q Consensus 72 ~~~~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~ 151 (409)
...+.++++-.|++ |++|+|-.--... ... ....++ .+...+.+++.|..||-+|+-. .+.+..
T Consensus 72 ~~dl~elv~Ya~~K--gVgi~lw~~~~~~---~~~------~~~~~~-~~~~f~~~~~~Gv~GvKidF~~----~d~Q~~ 135 (273)
T PF10566_consen 72 DFDLPELVDYAKEK--GVGIWLWYHSETG---GNV------ANLEKQ-LDEAFKLYAKWGVKGVKIDFMD----RDDQEM 135 (273)
T ss_dssp T--HHHHHHHHHHT--T-EEEEEEECCHT---TBH------HHHHCC-HHHHHHHHHHCTEEEEEEE--S----STSHHH
T ss_pred ccCHHHHHHHHHHc--CCCEEEEEeCCcc---hhh------HhHHHH-HHHHHHHHHHcCCCEEeeCcCC----CCCHHH
Confidence 45678888888888 6888876532111 001 112223 3788899999999999999973 344555
Q ss_pred HHHHHHHHHHHHH
Q 043488 152 GILFKEWRAAVAL 164 (409)
Q Consensus 152 ~~ll~~Lr~~l~~ 164 (409)
+++.+++-+...+
T Consensus 136 v~~y~~i~~~AA~ 148 (273)
T PF10566_consen 136 VNWYEDILEDAAE 148 (273)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666544443
No 132
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=35.11 E-value=28 Score=28.62 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhhhccccC
Q 043488 390 ILLIGFLLYYYCWMKNLKL 408 (409)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~ 408 (409)
|++-+.++|++||.|.-||
T Consensus 113 i~is~~~~~~yr~~r~~~~ 131 (139)
T PHA03099 113 IIITCCLLSVYRFTRRTKL 131 (139)
T ss_pred HHHHHHHHhhheeeecccC
Confidence 5556778899999998776
No 133
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=34.83 E-value=1.5e+02 Score=28.04 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCCCeEEEeeecc-------C---CcccHhhHHHHHHHHHHHHHHHhh
Q 043488 118 YFIDSSIKIARLYGFQGLDLSWNQA-------N---TSRDKYNIGILFKEWRAAVALEAR 167 (409)
Q Consensus 118 ~fi~sii~~l~~~~~DGIdiDwE~p-------~---~~~~~~~~~~ll~~Lr~~l~~~~~ 167 (409)
..+.+-.+-|.+-|||||-||+=-+ . .......+..|+.++++..+..+.
T Consensus 126 dii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~ 185 (300)
T COG2342 126 DIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANP 185 (300)
T ss_pred HHHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCC
Confidence 4455666666777999999997311 1 124456788899999998887754
No 134
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=34.81 E-value=3.7e+02 Score=25.67 Aligned_cols=107 Identities=15% Similarity=0.173 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcC-CCeEEEeeeccCC---cccHh
Q 043488 74 QFSNFTDTVKIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYG-FQGLDLSWNQANT---SRDKY 149 (409)
Q Consensus 74 ~~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~-~DGIdiDwE~p~~---~~~~~ 149 (409)
....+++.++++ +..++..+-.+..| . - .-+.+.-+.+.+.+++-+++.+ +|||-|+.=.-.. .+|.+
T Consensus 46 ~~~g~~~~a~~~--g~e~vp~~~a~A~P--~---G-~v~~~aye~l~~eil~~l~~agp~Dgv~L~LHGAmv~e~~~D~E 117 (292)
T PF07364_consen 46 EIGGFLDAAEAQ--GWEVVPLLWAAAEP--G---G-PVTREAYERLRDEILDRLRAAGPLDGVLLDLHGAMVAEGYDDGE 117 (292)
T ss_dssp HHHHHHHHHHHT--T-EEEEEEEEEE-S--E---E--B-HHHHHHHHHHHHHHHHHS---SEEEEEE-S---BSS-SSHH
T ss_pred chHHHHHHHHHC--CCEEEeeEeeeecC--C---C-cccHHHHHHHHHHHHHHHHhcCCcCEEEEeccCcEeecCCCCch
Confidence 345566666655 68888877543331 1 1 2246677888999999999986 9999999854332 12222
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCcccccCCCChhHHhccccEEE
Q 043488 150 NIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAAYPVDSIRQYLNWVH 205 (409)
Q Consensus 150 ~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~~~~~~~~y~~~~l~~~vD~v~ 205 (409)
..|++++|+.+... .-|.++.-...+. -+.+.+.+|.+.
T Consensus 118 --G~Ll~rvR~~vGp~---------vpI~~tlDlHaNv------s~~mv~~ad~~~ 156 (292)
T PF07364_consen 118 --GDLLRRVRAIVGPD---------VPIAATLDLHANV------SPRMVEAADIIV 156 (292)
T ss_dssp --HHHHHHHHHHHTTT---------SEEEEEE-TT----------HHHHHH-SEEE
T ss_pred --HHHHHHHHHHhCCC---------CeEEEEeCCCCCc------cHHHHHhCCEEE
Confidence 46999999999875 3455544322211 257788888854
No 135
>PRK14866 hypothetical protein; Provisional
Probab=34.65 E-value=95 Score=31.55 Aligned_cols=68 Identities=13% Similarity=0.143 Sum_probs=41.3
Q ss_pred CCcEEEEEEcCCCCCCCcccc-----------cccCChhHHHHH-HH-HHHHHHHHcCCCeEEEeeeccCCcccHhhHHH
Q 043488 87 PSITTLLSIGGGNNPNYSSYS-----------SMAGNPSFRKYF-ID-SSIKIARLYGFQGLDLSWNQANTSRDKYNIGI 153 (409)
Q Consensus 87 p~~kvllsiGG~~~~~~~~~~-----------~~~~~~~~r~~f-i~-sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ 153 (409)
...++++.|||.-. ...|. .++.+-.. ..+ -. .+.+.+++.+.|.+-|||....+ .++..+..
T Consensus 183 ~~~~~~iG~GGgHY--apr~t~i~le~~~~~GHi~pky~l-~~l~~~~~i~~a~~~~~~~~a~iD~Ks~k~-~~r~~i~~ 258 (451)
T PRK14866 183 HTDRPLVGFGGGHY--APRQTRIVLETDWAFGHIAADWQL-GALGDPAVLRAAFEASGADAAYIDRKAMSS-GDRPRLEA 258 (451)
T ss_pred cCCCEEEEeCCCCc--chhHHHHhhcCCeeEEeeccccch-hccCcHHHHHHHHHhcCCCEEEEecCCCCH-HHHHHHHH
Confidence 46799999999765 33333 33322110 001 11 34455556789999999987665 67766666
Q ss_pred HHHHH
Q 043488 154 LFKEW 158 (409)
Q Consensus 154 ll~~L 158 (409)
+++++
T Consensus 259 ~l~~l 263 (451)
T PRK14866 259 LLEEL 263 (451)
T ss_pred HHHHC
Confidence 66655
No 136
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.51 E-value=1.1e+02 Score=29.37 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=27.2
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCeEEEeeecc
Q 043488 111 GNPSFRKYFIDSSIKIARLYGFQGLDLSWNQA 142 (409)
Q Consensus 111 ~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p 142 (409)
.+++.|+-|.+.+.+.+.+.|+||+=+|...|
T Consensus 138 tnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 138 TNPEGREWWKEGVKEALLDLGIDSTWNDNNEY 169 (317)
T ss_pred CChHHHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 57899998888888899999999999998544
No 137
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=34.26 E-value=59 Score=20.49 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=8.0
Q ss_pred CchhhHHHHHHHHHH
Q 043488 1 MASKIIILVLYIFIF 15 (409)
Q Consensus 1 M~~~~~~~~l~~~~~ 15 (409)
|+..++++.+.++++
T Consensus 1 Mk~l~~a~~l~lLal 15 (36)
T PF08194_consen 1 MKCLSLAFALLLLAL 15 (36)
T ss_pred CceeHHHHHHHHHHH
Confidence 676666444444443
No 138
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=33.60 E-value=77 Score=24.27 Aligned_cols=52 Identities=4% Similarity=-0.008 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHHHcCCCeEEEeeeccCC---------cccHhhHHHHHHHHHHHHHH
Q 043488 113 PSFRKYFIDSSIKIARLYGFQGLDLSWNQANT---------SRDKYNIGILFKEWRAAVAL 164 (409)
Q Consensus 113 ~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~---------~~~~~~~~~ll~~Lr~~l~~ 164 (409)
....+.-...+.+.+++++++=--+|.|+.-+ .+++.+|..|+++|...++.
T Consensus 21 ~~~e~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~~f~~ 81 (88)
T PF04468_consen 21 REREEEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYTAESRVDFRELVRDLAREFKT 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHHHhCc
Confidence 34445566678888899998887888887653 36788999999999988864
No 139
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=32.89 E-value=3.1e+02 Score=26.54 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=26.6
Q ss_pred CcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeecc
Q 043488 88 SITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQA 142 (409)
Q Consensus 88 ~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p 142 (409)
+..++++|.|.+ + +.|+ .+++.+++.|+|+|+|+.-.|
T Consensus 99 ~~pvi~si~g~~-------------~---~~~~-~~a~~~~~~gad~iElN~s~~ 136 (325)
T cd04739 99 SIPVIASLNGVS-------------A---GGWV-DYARQIEEAGADALELNIYAL 136 (325)
T ss_pred CCeEEEEeCCCC-------------H---HHHH-HHHHHHHhcCCCEEEEeCCCC
Confidence 578899997632 1 2333 455566777999999999764
No 140
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=32.71 E-value=86 Score=21.80 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCCeE-EEeeeccCCcccHhhHHHHHHHHHHHH
Q 043488 121 DSSIKIARLYGFQGL-DLSWNQANTSRDKYNIGILFKEWRAAV 162 (409)
Q Consensus 121 ~sii~~l~~~~~DGI-diDwE~p~~~~~~~~~~~ll~~Lr~~l 162 (409)
+.+++.|++.|+||. .|.||-+.- +....+..=++-||..+
T Consensus 3 ~~i~~~L~~~GYdG~~siE~ED~~~-~~~~G~~~a~~~lr~~l 44 (55)
T PF07582_consen 3 KRIFSALREIGYDGWLSIEHEDALM-DPEEGAREAAAFLRKLL 44 (55)
T ss_dssp HHHHHHHHHTT--SEEEE---STTT-SHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHcCCCceEEEEeecCCC-CHHHHHHHHHHHHHHhc
Confidence 357889999999995 678886553 33344444444444443
No 141
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=32.45 E-value=1.4e+02 Score=24.70 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCccccccc-CChhHHHHHHHHHHHHHHHcCCCeEEEe
Q 043488 72 EKQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSSYSSMA-GNPSFRKYFIDSSIKIARLYGFQGLDLS 138 (409)
Q Consensus 72 ~~~~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~~~~~-~~~~~r~~fi~sii~~l~~~~~DGIdiD 138 (409)
-..+.-+++.+|+. |+++++-+-=- +..|..-. -+.+.|+.+.+.|...++++||.=+|+.
T Consensus 35 y~Dl~l~L~~~k~~--g~~~lfVi~Pv----Ng~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~s 96 (130)
T PF04914_consen 35 YDDLQLLLDVCKEL--GIDVLFVIQPV----NGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADFS 96 (130)
T ss_dssp HHHHHHHHHHHHHT--T-EEEEEE--------HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-T
T ss_pred HHHHHHHHHHHHHc--CCceEEEecCC----cHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEecc
Confidence 34566677778877 68888776421 22232222 2689999999999999999999666653
No 142
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=32.40 E-value=1.7e+02 Score=27.55 Aligned_cols=58 Identities=14% Similarity=0.156 Sum_probs=46.9
Q ss_pred HHHHHhhCCC-cEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEE
Q 043488 79 TDTVKIKNPS-ITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDL 137 (409)
Q Consensus 79 ~~~lk~~~p~-~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdi 137 (409)
++.++...++ ..+++.=-||-. +...+.....+.+.++.|++++..-|+..|+|=+.|
T Consensus 221 ~e~vqsa~g~~k~~~v~EtGWPS-~G~~~G~a~pS~anq~~~~~~i~~~~~~~G~d~fvf 279 (305)
T COG5309 221 LERVQSACGTKKTVWVTETGWPS-DGRTYGSAVPSVANQKIAVQEILNALRSCGYDVFVF 279 (305)
T ss_pred HHHHHHhcCCCccEEEeeccCCC-CCCccCCcCCChhHHHHHHHHHHhhhhccCccEEEe
Confidence 4566666666 778888888876 667788888889999999999999999999886655
No 143
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=32.00 E-value=1.5e+02 Score=30.47 Aligned_cols=56 Identities=20% Similarity=0.109 Sum_probs=37.7
Q ss_pred cCChhHHHHHHHHHHHHHHHcCCCeEEEe-----eeccCCcc-cH-hhHHHHHHHHHHHHHHHh
Q 043488 110 AGNPSFRKYFIDSSIKIARLYGFQGLDLS-----WNQANTSR-DK-YNIGILFKEWRAAVALEA 166 (409)
Q Consensus 110 ~~~~~~r~~fi~sii~~l~~~~~DGIdiD-----wE~p~~~~-~~-~~~~~ll~~Lr~~l~~~~ 166 (409)
..|+.- .+++..++++.-+.|.||+-|| |+.+++.. .. ...-.+++++|+.+...+
T Consensus 162 ~~np~v-~e~i~~il~fwl~~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~ 224 (470)
T TIGR03852 162 VTSETT-KRFIRDNLENLAEHGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTG 224 (470)
T ss_pred CCCHHH-HHHHHHHHHHHHHcCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhccCC
Confidence 345444 4555566666668899999999 67776532 11 456789999998876544
No 144
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=30.81 E-value=1.1e+02 Score=31.46 Aligned_cols=81 Identities=10% Similarity=0.209 Sum_probs=54.5
Q ss_pred EEEEEEEEeCCCeEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCccc--ccccCChhHHHHHHHHHHHHHH
Q 043488 51 LMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSSY--SSMAGNPSFRKYFIDSSIKIAR 128 (409)
Q Consensus 51 ii~~f~~i~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~--~~~~~~~~~r~~fi~sii~~l~ 128 (409)
..++|..+-|+|.. ......-..+.+++..|+++ |++.++++--|+.| ..+ ..-..+++..+.|++=+...++
T Consensus 72 fSIsWsRI~P~g~~-~~N~~gl~~Y~~lid~l~~~--GI~P~VTL~H~dlP--~~L~~~GGW~n~~~v~~F~~YA~~~f~ 146 (467)
T TIGR01233 72 ISIAWSRIFPTGYG-EVNEKGVEFYHKLFAECHKR--HVEPFVTLHHFDTP--EALHSNGDFLNRENIEHFIDYAAFCFE 146 (467)
T ss_pred EecchhhccCCCCC-CcCHHHHHHHHHHHHHHHHc--CCEEEEeccCCCCc--HHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 34466677776521 23333445678888888887 79999999766652 211 1223468888899988888889
Q ss_pred HcCCCeEEEee
Q 043488 129 LYGFQGLDLSW 139 (409)
Q Consensus 129 ~~~~DGIdiDw 139 (409)
++| | |. .|
T Consensus 147 ~fg-d-Vk-~W 154 (467)
T TIGR01233 147 EFP-E-VN-YW 154 (467)
T ss_pred HhC-C-CC-EE
Confidence 998 7 76 35
No 145
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=30.72 E-value=1.3e+02 Score=28.03 Aligned_cols=55 Identities=13% Similarity=0.242 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEcCCCCCC-CcccccccCChhHHHHHHHHHHHHHH
Q 043488 74 QFSNFTDTVKIKNPSITTLLSIGGGNNPN-YSSYSSMAGNPSFRKYFIDSSIKIAR 128 (409)
Q Consensus 74 ~~~~~~~~lk~~~p~~kvllsiGG~~~~~-~~~~~~~~~~~~~r~~fi~sii~~l~ 128 (409)
.+..+++.+++.||++||+++|.=--.-. -+.-..+..|..+...+...+-++++
T Consensus 153 ~l~~~~~~l~~~nP~~kiilTVSPVrl~~T~~~~d~~~an~~SKs~Lr~a~~~l~~ 208 (251)
T PF08885_consen 153 DLEAIIDLLRSINPDIKIILTVSPVRLIATFRDRDGLVANQYSKSTLRAAAHELVR 208 (251)
T ss_pred HHHHHHHHHHhhCCCceEEEEeccchhhcccccccchhhhhhhHHHHHHHHHHHHh
Confidence 35667778999999999999996321100 00112344444444444444444444
No 146
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=30.57 E-value=64 Score=23.31 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=18.2
Q ss_pred ehHHHHHHHHHHHHHHHHHhhh
Q 043488 382 VLPITTACILLIGFLLYYYCWM 403 (409)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~ 403 (409)
++=+++|+.||+++++++-||-
T Consensus 13 i~G~LIAvvLLLsIl~~lt~~a 34 (66)
T PF13179_consen 13 ITGMLIAVVLLLSILAFLTYWA 34 (66)
T ss_pred hHhHHHHHHHHHHHHHHHHHHH
Confidence 5667888899999999988874
No 147
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=30.46 E-value=84 Score=23.79 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=36.7
Q ss_pred HHHHcCCCeEEEeeec----cCC----------cccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCcccccCC
Q 043488 126 IARLYGFQGLDLSWNQ----ANT----------SRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSPLSTAAA 191 (409)
Q Consensus 126 ~l~~~~~DGIdiDwE~----p~~----------~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~~~~~~~~ 191 (409)
++.+++.|.--+-||- |.. ....+.+..+++++.+.+++..+ .-.||+...... .
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP------~~pvt~g~~~~~-----~ 69 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDP------SQPVTSGFWGGD-----W 69 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-T------TS-EE--B--S------T
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCC------CCcEEeecccCC-----H
Confidence 3567777777777752 321 01246678899999888887643 234555543221 1
Q ss_pred CChhHHh-ccccEEEeecc
Q 043488 192 YPVDSIR-QYLNWVHVITT 209 (409)
Q Consensus 192 y~~~~l~-~~vD~v~vm~Y 209 (409)
-.+..+. +.+|++.+-.|
T Consensus 70 ~~~~~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 70 EDLEQLQAENLDVISFHPY 88 (88)
T ss_dssp THHHHS--TT-SSEEB-EE
T ss_pred HHHHHhchhcCCEEeeecC
Confidence 1245555 78898876554
No 148
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.37 E-value=1.6e+02 Score=28.44 Aligned_cols=31 Identities=19% Similarity=0.154 Sum_probs=23.8
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCeEEEeeecc
Q 043488 111 GNPSFRKYFIDSSIKIARLYGFQGLDLSWNQA 142 (409)
Q Consensus 111 ~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p 142 (409)
.||+.|+=|.+.+.+ +.+.|+||+=+|+..|
T Consensus 135 tnp~a~~w~~~~~~~-~~~~Gvdg~w~D~~Ep 165 (317)
T cd06598 135 FDPAAQAWFHDNYKK-LIDQGVTGWWGDLGEP 165 (317)
T ss_pred CCHHHHHHHHHHHHH-hhhCCccEEEecCCCc
Confidence 478888888766655 4788999999999543
No 149
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=30.23 E-value=31 Score=34.02 Aligned_cols=16 Identities=31% Similarity=1.072 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhhccc
Q 043488 391 LLIGFLLYYYCWMKNL 406 (409)
Q Consensus 391 ~~~~~~~~~~~~~~~~ 406 (409)
...+.+|||+||+-|+
T Consensus 246 Ff~I~lVF~iCWlpNI 261 (405)
T PF02101_consen 246 FFKIMLVFYICWLPNI 261 (405)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 3456789999999986
No 150
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=30.21 E-value=4.4e+02 Score=24.26 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcC--CCeEEEeeeccCCcccHhhHH
Q 043488 75 FSNFTDTVKIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYG--FQGLDLSWNQANTSRDKYNIG 152 (409)
Q Consensus 75 ~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~--~DGIdiDwE~p~~~~~~~~~~ 152 (409)
+....+.+|+..|++|+++. +.+- .....+++.+.+ +++-+++.| +|||-+-+-......+...+.
T Consensus 105 i~~af~~ar~~~P~a~l~~N--dy~~---------~~~~~k~~~~~~-~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~ 172 (254)
T smart00633 105 IEKAFRYAREADPDAKLFYN--DYNT---------EEPNAKRQAIYE-LVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIR 172 (254)
T ss_pred HHHHHHHHHHhCCCCEEEEe--ccCC---------cCccHHHHHHHH-HHHHHHHCCCccceeeeeeeecCCCCCHHHHH
Confidence 34444578888999999885 2211 111245555554 444444444 799888653211111233444
Q ss_pred HHHHHHH
Q 043488 153 ILFKEWR 159 (409)
Q Consensus 153 ~ll~~Lr 159 (409)
+.|+++.
T Consensus 173 ~~l~~~~ 179 (254)
T smart00633 173 AALDRFA 179 (254)
T ss_pred HHHHHHH
Confidence 5555543
No 151
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=30.01 E-value=96 Score=28.97 Aligned_cols=45 Identities=11% Similarity=0.115 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHH
Q 043488 121 DSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALE 165 (409)
Q Consensus 121 ~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~ 165 (409)
...++.+++.|||||+|....+........-..-++++++.+.+.
T Consensus 13 ~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 57 (279)
T cd00019 13 ENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEG 57 (279)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHc
Confidence 467889999999999997654422110000124567777777665
No 152
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=29.98 E-value=3.2e+02 Score=31.83 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=32.7
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHH
Q 043488 112 NPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALE 165 (409)
Q Consensus 112 ~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~ 165 (409)
++.-|+-.++++.-|++ +|+||+-||--......+ ..|+++++..+++.
T Consensus 317 ~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~----~~f~~~~~~~l~ai 365 (1221)
T PRK14510 317 RPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREP----DGFIDEFRQFLKAM 365 (1221)
T ss_pred CHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCc----cchHHHHHHHHHHh
Confidence 56777778888888888 999999999743321111 13556666665544
No 153
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=29.92 E-value=3.4e+02 Score=26.45 Aligned_cols=69 Identities=16% Similarity=0.317 Sum_probs=39.1
Q ss_pred HHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcC--CCeEEEeeeccCCcccHhhHHHHHH
Q 043488 79 TDTVKIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYG--FQGLDLSWNQANTSRDKYNIGILFK 156 (409)
Q Consensus 79 ~~~lk~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~--~DGIdiDwE~p~~~~~~~~~~~ll~ 156 (409)
.+.+|+..|++||++-+..... ....+.|.+. ++.+| ||=|=+.+ ||.-.....++..-++
T Consensus 160 ~~AVr~~~p~~kV~lH~~~~~~------------~~~~~~~f~~----l~~~g~d~DviGlSy-YP~w~~~l~~l~~~l~ 222 (332)
T PF07745_consen 160 IKAVREVDPNIKVMLHLANGGD------------NDLYRWFFDN----LKAAGVDFDVIGLSY-YPFWHGTLEDLKNNLN 222 (332)
T ss_dssp HHHHHTHSSTSEEEEEES-TTS------------HHHHHHHHHH----HHHTTGG-SEEEEEE--STTST-HHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEECCCCc------------hHHHHHHHHH----HHhcCCCcceEEEec-CCCCcchHHHHHHHHH
Confidence 3578888999999999976433 2333444444 44443 33222222 4543345667777788
Q ss_pred HHHHHHHH
Q 043488 157 EWRAAVAL 164 (409)
Q Consensus 157 ~Lr~~l~~ 164 (409)
.|++++++
T Consensus 223 ~l~~ry~K 230 (332)
T PF07745_consen 223 DLASRYGK 230 (332)
T ss_dssp HHHHHHT-
T ss_pred HHHHHhCC
Confidence 88877754
No 154
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.70 E-value=2.9e+02 Score=23.62 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEE
Q 043488 72 EKQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDL 137 (409)
Q Consensus 72 ~~~~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdi 137 (409)
...+..+++.+++++|+.++++.----.. ..... ...+....+.+.+.+.++.+++++.=||+
T Consensus 92 ~~~l~~li~~i~~~~~~~~iil~t~~p~~--~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~vD~ 154 (188)
T cd01827 92 KKDYETMIDSFQALPSKPKIYICYPIPAY--YGDGG-FINDNIIKKEIQPMIDKIAKKLNLKLIDL 154 (188)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEeCCccc--ccCCC-ccchHHHHHHHHHHHHHHHHHcCCcEEEc
Confidence 35677888888998999888765321111 11111 12334445667777788888888766654
No 155
>PRK13840 sucrose phosphorylase; Provisional
Probab=29.55 E-value=1.9e+02 Score=29.98 Aligned_cols=56 Identities=9% Similarity=-0.039 Sum_probs=36.6
Q ss_pred cCChhHHHHHHHHHHHHHHHcCCCeEEEe-----eeccCCc-ccHhhHHHHHHHHHHHHHHHh
Q 043488 110 AGNPSFRKYFIDSSIKIARLYGFQGLDLS-----WNQANTS-RDKYNIGILFKEWRAAVALEA 166 (409)
Q Consensus 110 ~~~~~~r~~fi~sii~~l~~~~~DGIdiD-----wE~p~~~-~~~~~~~~ll~~Lr~~l~~~~ 166 (409)
..||+-++.+.+ ++++.-+.|.||+-|| |+.+++. ...+.--.|++++|+.++..+
T Consensus 166 ~~NP~V~~~i~~-il~fwl~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~ 227 (495)
T PRK13840 166 VHSAAGWEYLMS-ILDRFAASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARG 227 (495)
T ss_pred CCCHHHHHHHHH-HHHHHHHCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcC
Confidence 467888777776 5555566799999999 3334321 112333468899998887543
No 156
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=29.52 E-value=71 Score=23.52 Aligned_cols=20 Identities=5% Similarity=0.081 Sum_probs=12.9
Q ss_pred CCCchhHHHHHHHhhhcccC
Q 043488 354 SDHYWMLSQAAAEEDKRNRQ 373 (409)
Q Consensus 354 ~Dd~~~L~~a~~~~~~~~~~ 373 (409)
-||++.-++.+++....+++
T Consensus 17 ddDf~~Fi~vVksVltdk~~ 36 (72)
T PF12575_consen 17 DDDFNNFINVVKSVLTDKKK 36 (72)
T ss_pred HHHHHHHHHHHHHHHcCCcc
Confidence 34578778887777554443
No 157
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=28.99 E-value=3.4e+02 Score=22.77 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=40.4
Q ss_pred chhHHHHHHHHHHhhCCCcEEEE-EEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEe
Q 043488 71 DEKQFSNFTDTVKIKNPSITTLL-SIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLS 138 (409)
Q Consensus 71 ~~~~~~~~~~~lk~~~p~~kvll-siGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiD 138 (409)
-...+..+++.+++++|+.+|++ ++--... .. . ......+.++++.+.+.++.+++++.=||+.
T Consensus 73 ~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~--~~-~-~~~~~~~~~~~~n~~l~~~a~~~~~~~id~~ 137 (174)
T cd01841 73 FIKWYRDIIEQIREEFPNTKIYLLSVLPVLE--ED-E-IKTRSNTRIQRLNDAIKELAPELGVTFIDLN 137 (174)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeeCCcCc--cc-c-cccCCHHHHHHHHHHHHHHHHHCCCEEEEcH
Confidence 34567788888888889998774 3321111 11 0 1112345677888888888899886666654
No 158
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=28.81 E-value=1.3e+02 Score=28.08 Aligned_cols=48 Identities=33% Similarity=0.477 Sum_probs=32.5
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHh
Q 043488 111 GNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEA 166 (409)
Q Consensus 111 ~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~ 166 (409)
.+++.|+.+++ ++++..++++||+-||--.-.. . .++++++.+++...
T Consensus 142 ~n~~v~~~i~~-~~~~w~~~giDGfR~D~~~~~~---~----~~~~~~~~~~~~~~ 189 (316)
T PF00128_consen 142 ENPEVREYIID-VLKFWIEEGIDGFRLDAAKHIP---K----EFWKEFRDEVKEEK 189 (316)
T ss_dssp TSHHHHHHHHH-HHHHHHHTTESEEEETTGGGSS---H----HHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcc-cccchhhceEeEEEEccccccc---h----hhHHHHhhhhhhhc
Confidence 45667777777 6666666779999999743222 1 67777777777653
No 159
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=28.56 E-value=84 Score=28.23 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=16.7
Q ss_pred eeEeeehHHHHHHHHHHHHHHHHHhhhc
Q 043488 377 LLWAIVLPITTACILLIGFLLYYYCWMK 404 (409)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (409)
++ |.|++++.+|+|++.+..=|+||-+
T Consensus 101 ~l-I~lv~~g~~lLla~~~~~~Y~~~~R 127 (202)
T PF06365_consen 101 TL-IALVTSGSFLLLAILLGAGYCCHQR 127 (202)
T ss_pred EE-EehHHhhHHHHHHHHHHHHHHhhhh
Confidence 55 6677777666666655555666644
No 160
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=28.52 E-value=4.1e+02 Score=25.15 Aligned_cols=58 Identities=10% Similarity=0.051 Sum_probs=35.5
Q ss_pred CcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHc--CCCeEEEeeeccCCc-------ccHhhHHHHHHHH
Q 043488 88 SITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLY--GFQGLDLSWNQANTS-------RDKYNIGILFKEW 158 (409)
Q Consensus 88 ~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~--~~DGIdiDwE~p~~~-------~~~~~~~~ll~~L 158 (409)
+..++++|.|.+ + +.++ .+++.+++. ++|+|||++--|... .+.+....+++++
T Consensus 90 ~~pl~~qi~g~~-------------~---~~~~-~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~v 152 (300)
T TIGR01037 90 PTPLIASVYGSS-------------V---EEFA-EVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAV 152 (300)
T ss_pred CCcEEEEeecCC-------------H---HHHH-HHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHH
Confidence 467899998732 1 2333 444555553 499999999877532 2334555666666
Q ss_pred HHHH
Q 043488 159 RAAV 162 (409)
Q Consensus 159 r~~l 162 (409)
|+..
T Consensus 153 r~~~ 156 (300)
T TIGR01037 153 KDKT 156 (300)
T ss_pred HHhc
Confidence 6554
No 161
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=28.31 E-value=3.9e+02 Score=23.05 Aligned_cols=107 Identities=9% Similarity=0.071 Sum_probs=57.4
Q ss_pred CCccEEEEEEEEEeCCCeEEecCC--------cchhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhHHH
Q 043488 46 ALFTHLMCGFADVNSTSYELSLSP--------SDEKQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRK 117 (409)
Q Consensus 46 ~~~Thii~~f~~i~~~~~~~~~~~--------~~~~~~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~ 117 (409)
-.|.+||+.+....... ...+. .....+..+.+.+.+. |+||.++++-+ ...|.+ .+.+...
T Consensus 32 ~GidtlIlq~~~~~~~~--~yps~~~~~~~~~~~~d~l~~~L~~A~~~--Gmkv~~Gl~~~----~~~w~~--~~~~~~~ 101 (166)
T PF14488_consen 32 IGIDTLILQWTGYGGFA--FYPSKLSPGGFYMPPVDLLEMILDAADKY--GMKVFVGLYFD----PDYWDQ--GDLDWEA 101 (166)
T ss_pred cCCcEEEEEEeecCCcc--cCCccccCccccCCcccHHHHHHHHHHHc--CCEEEEeCCCC----chhhhc--cCHHHHH
Confidence 45888888776554321 11111 1223455555444444 89999999853 233442 4444443
Q ss_pred HHHHHHHHHHH-HcC----CCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHH
Q 043488 118 YFIDSSIKIAR-LYG----FQGLDLSWNQANTSRDKYNIGILFKEWRAAVALE 165 (409)
Q Consensus 118 ~fi~sii~~l~-~~~----~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~ 165 (409)
.+.+.+++-+. .|| |.|.-|-.|-.... .+-...++.|++.++..
T Consensus 102 ~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~---~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 102 ERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN---WNAPERFALLGKYLKQI 151 (166)
T ss_pred HHHHHHHHHHHHHHcCCCCCceEEEecccCCcc---cchHHHHHHHHHHHHHh
Confidence 33333433332 343 99999999954432 12245566666666654
No 162
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=28.18 E-value=3.2e+02 Score=24.04 Aligned_cols=64 Identities=13% Similarity=0.116 Sum_probs=34.3
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEc-CCCCCCCccccc-ccCChhHHHHHHHHHHHHHHHcCCCeEEE
Q 043488 71 DEKQFSNFTDTVKIKNPSITTLLSIG-GGNNPNYSSYSS-MAGNPSFRKYFIDSSIKIARLYGFQGLDL 137 (409)
Q Consensus 71 ~~~~~~~~~~~lk~~~p~~kvllsiG-G~~~~~~~~~~~-~~~~~~~r~~fi~sii~~l~~~~~DGIdi 137 (409)
-......|++.+++++|++.|++.-- .... ..+.. .-...+...+.++.+++-+++.|...+.+
T Consensus 76 ~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~---~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~ 141 (178)
T PF14606_consen 76 FRERLDGFVKTIREAHPDTPILLVSPIPYPA---GYFDNSRGETVEEFREALREAVEQLRKEGDKNLYY 141 (178)
T ss_dssp HHHHHHHHHHHHHTT-SSS-EEEEE----TT---TTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCCccc---cccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 34567788999999999998886532 1221 22222 11223344556667777777777665543
No 163
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=27.66 E-value=2.1e+02 Score=27.52 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhCCCcEEEEEEcCCCCCCCccc-cc----------------------------ccCChhHHHHHHHHHHH
Q 043488 75 FSNFTDTVKIKNPSITTLLSIGGGNNPNYSSY-SS----------------------------MAGNPSFRKYFIDSSIK 125 (409)
Q Consensus 75 ~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~-~~----------------------------~~~~~~~r~~fi~sii~ 125 (409)
.+.+++.||++ |+|+++.|--.-..++..+ .. =..||+.|+=+.+.+.+
T Consensus 73 p~~mi~~Lh~~--G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~ 150 (317)
T cd06594 73 LDELIEELKAR--GIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKE 150 (317)
T ss_pred HHHHHHHHHHC--CCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHH
Confidence 45777888887 7898887632211011111 10 12468899999999999
Q ss_pred HHHHcCCCeEEEeee
Q 043488 126 IARLYGFQGLDLSWN 140 (409)
Q Consensus 126 ~l~~~~~DGIdiDwE 140 (409)
++.++|+||+=+|+.
T Consensus 151 ~~~~~Gvdg~w~D~~ 165 (317)
T cd06594 151 MLLDLGLSGWMADFG 165 (317)
T ss_pred HhhhcCCcEEEecCC
Confidence 988999999999984
No 164
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=27.62 E-value=1.1e+02 Score=32.09 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHH
Q 043488 121 DSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALE 165 (409)
Q Consensus 121 ~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~ 165 (409)
+|+++++.+.|+|=.-|||..|...+..-.+...++.+.++++.-
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~~r~~~ldDYv~~i~~Ald~V 281 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKAHREWGLSTYVDALKEAVDAV 281 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChhhcCCCHHHHHHHHHHHHHHH
Confidence 699999999999999999999985322223444455555555554
No 165
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.55 E-value=61 Score=26.61 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=13.3
Q ss_pred eehHHHHHHHHHHHHHHHHHhhhcc
Q 043488 381 IVLPITTACILLIGFLLYYYCWMKN 405 (409)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (409)
|++=..+.+|+++.+++|.++.+++
T Consensus 69 Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444556666666666665543
No 166
>PRK08005 epimerase; Validated
Probab=27.54 E-value=1.9e+02 Score=26.10 Aligned_cols=76 Identities=12% Similarity=0.088 Sum_probs=46.1
Q ss_pred cccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCc
Q 043488 106 YSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSP 185 (409)
Q Consensus 106 ~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~~ 185 (409)
.+-|+.+|+ +|+ +.+.+.|.|-|-|++|-. .....+++.+|+. |. ...+++-+..
T Consensus 63 vHLMv~~P~---~~i----~~~~~~gad~It~H~Ea~------~~~~~~l~~Ik~~----G~--------k~GlAlnP~T 117 (210)
T PRK08005 63 FHLMVSSPQ---RWL----PWLAAIRPGWIFIHAESV------QNPSEILADIRAI----GA--------KAGLALNPAT 117 (210)
T ss_pred EEeccCCHH---HHH----HHHHHhCCCEEEEcccCc------cCHHHHHHHHHHc----CC--------cEEEEECCCC
Confidence 456777764 344 444556999999999932 1234555555543 32 3455554332
Q ss_pred ccccCCCChhHHhccccEEEeeccC
Q 043488 186 LSTAAAYPVDSIRQYLNWVHVITTE 210 (409)
Q Consensus 186 ~~~~~~y~~~~l~~~vD~v~vm~YD 210 (409)
... .+..+.+.+|+|.+|+-+
T Consensus 118 p~~----~i~~~l~~vD~VlvMsV~ 138 (210)
T PRK08005 118 PLL----PYRYLALQLDALMIMTSE 138 (210)
T ss_pred CHH----HHHHHHHhcCEEEEEEec
Confidence 221 245567789999999974
No 167
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=27.10 E-value=5.1e+02 Score=23.99 Aligned_cols=58 Identities=10% Similarity=-0.030 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcC-CCeEEEeeec
Q 043488 75 FSNFTDTVKIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYG-FQGLDLSWNQ 141 (409)
Q Consensus 75 ~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~-~DGIdiDwE~ 141 (409)
.......+++..+++++++++--... ...| -.+++.|.++.+ .+-+.+ .|-|||++..
T Consensus 61 ~~~~~~~l~~~~~~~PiI~T~R~~~e--GG~~---~~~~~~~~~ll~----~~~~~~~~d~vDiEl~~ 119 (253)
T PRK02412 61 VLAAAPAIREKFAGKPLLFTFRTAKE--GGEI---ALSDEEYLALIK----AVIKSGLPDYIDVELFS 119 (253)
T ss_pred HHHHHHHHHHhcCCCcEEEEECChhh--CCCC---CCCHHHHHHHHH----HHHhcCCCCEEEEeccC
Confidence 33444456666667899999953221 1122 123444444433 333446 8999999863
No 168
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=26.61 E-value=1.1e+02 Score=29.29 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=34.9
Q ss_pred hhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCC-----------cccHhhHH
Q 043488 84 IKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANT-----------SRDKYNIG 152 (409)
Q Consensus 84 ~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~-----------~~~~~~~~ 152 (409)
......++.+=|+|.+ + +.++ ..++.+..+++|||||+.-=|.. -.+.+...
T Consensus 49 ~~~~~~p~~~Ql~g~~-------------~---~~~~-~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~ 111 (309)
T PF01207_consen 49 FLPNERPLIVQLFGND-------------P---EDLA-EAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLA 111 (309)
T ss_dssp GCC-T-TEEEEEE-S--------------H---HHHH-HHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHH
T ss_pred ccccccceeEEEeecc-------------H---HHHH-HHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhh
Confidence 3333457778888733 3 2333 44556777999999999987652 13556677
Q ss_pred HHHHHHHHHHH
Q 043488 153 ILFKEWRAAVA 163 (409)
Q Consensus 153 ~ll~~Lr~~l~ 163 (409)
.+++++++.++
T Consensus 112 ~iv~~~~~~~~ 122 (309)
T PF01207_consen 112 EIVKAVRKAVP 122 (309)
T ss_dssp HHHHHHHHH-S
T ss_pred HHHHhhhcccc
Confidence 78888877665
No 169
>PRK09505 malS alpha-amylase; Reviewed
Probab=26.52 E-value=81 Score=34.00 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=25.9
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCeEEEeee
Q 043488 111 GNPSFRKYFIDSSIKIARLYGFQGLDLSWN 140 (409)
Q Consensus 111 ~~~~~r~~fi~sii~~l~~~~~DGIdiDwE 140 (409)
.+++-|+.+++.+..|++++|+||+-||--
T Consensus 434 ~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaa 463 (683)
T PRK09505 434 DGYTPRDYLTHWLSQWVRDYGIDGFRVDTA 463 (683)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEech
Confidence 356788899999999999999999999963
No 170
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=26.42 E-value=5.1e+02 Score=23.81 Aligned_cols=61 Identities=13% Similarity=0.238 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeec
Q 043488 73 KQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQ 141 (409)
Q Consensus 73 ~~~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~ 141 (409)
.........+++...++++++++---.. .+.+. . +++.|.++. ..++...+.|=|||.++.
T Consensus 47 ~~~~~~i~~l~~~~~~~p~I~T~Rt~~E--GG~~~--~-~~~~~~~ll---~~~~~~~~~d~vDiE~~~ 107 (238)
T PRK13575 47 DQLAEMITKLKVLQDSFKLLVTYRTKLQ--GGYGQ--F-TNDLYLNLL---SDLANINGIDMIDIEWQA 107 (238)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCChhh--CCCCC--C-CHHHHHHHH---HHHHHhCCCCEEEEEccc
Confidence 3455555566765567899999942111 11111 1 344444443 345556678999998864
No 171
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=26.40 E-value=2.5e+02 Score=30.36 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=27.5
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCeEEEeeecc
Q 043488 111 GNPSFRKYFIDSSIKIARLYGFQGLDLSWNQA 142 (409)
Q Consensus 111 ~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p 142 (409)
+.+-.|+-.++++.=|+++++.||.-||.-..
T Consensus 332 ~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~ 363 (697)
T COG1523 332 EHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGV 363 (697)
T ss_pred CChHHHHHHHHHHHHHHHHhCCCceeecchhh
Confidence 34777888999999999999999999998644
No 172
>COG3410 Uncharacterized conserved protein [Function unknown]
Probab=26.39 E-value=1.6e+02 Score=25.61 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=32.8
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHH
Q 043488 111 GNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKE 157 (409)
Q Consensus 111 ~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~ 157 (409)
.+++..++.+.+-+..|-+-|..|++|-+|-| +-++.+..+.+.
T Consensus 145 k~~eik~kiIkNsinvlmtRGIrGlyiyaeDp---elrerl~~l~~~ 188 (191)
T COG3410 145 KNQEIKEKIIKNSINVLMTRGIRGLYIYAEDP---ELRERLVELKRG 188 (191)
T ss_pred hCHHHHHHHHHHHHHHHHhcccceEEEEEeCH---HHHHHHHHHHhh
Confidence 45677788999999999999999999999844 334444444443
No 173
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=26.02 E-value=3.3e+02 Score=29.67 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHhhCCCcEEE---EEE-cCCCC--CCCccc------------------c-----------cccCChhHHH
Q 043488 73 KQFSNFTDTVKIKNPSITTL---LSI-GGGNN--PNYSSY------------------S-----------SMAGNPSFRK 117 (409)
Q Consensus 73 ~~~~~~~~~lk~~~p~~kvl---lsi-GG~~~--~~~~~~------------------~-----------~~~~~~~~r~ 117 (409)
..++.+++.+|++++++|=+ -++ |=|++ |+...+ . --+-+|+...
T Consensus 305 ~Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~~~~~p~~spg~~~~~~d~~~d~~~~~g~glv~Pe~~~ 384 (777)
T PLN02711 305 KGMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPESKVVAPKLSPGLKMTMEDLAVDKIVNNGVGLVPPELAY 384 (777)
T ss_pred CcHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccceeeccccCcccccccccccccccccCcccccCHHHHH
Confidence 46778888999988777643 444 32443 222111 0 0124577888
Q ss_pred HHHHHHHHHHHHcCCCeEEEeeec
Q 043488 118 YFIDSSIKIARLYGFQGLDLSWNQ 141 (409)
Q Consensus 118 ~fi~sii~~l~~~~~DGIdiDwE~ 141 (409)
.|-+...++|.+.|+|||-+|-..
T Consensus 385 ~FY~~~hs~Las~GVDgVKVDvQ~ 408 (777)
T PLN02711 385 QMYEGLHSHLQSVGIDGVKVDVIH 408 (777)
T ss_pred HHHHHHHHHHHHcCCCeEEEchhh
Confidence 999999999999999999999654
No 174
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=26.00 E-value=71 Score=32.28 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=41.0
Q ss_pred ccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHH
Q 043488 107 SSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALE 165 (409)
Q Consensus 107 ~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~ 165 (409)
...+++...|++.+..|+++|.++|||| -|.....-.|. ...|....+.|...+++.
T Consensus 97 pRplrdk~yqq~c~~~I~~yL~engfd~-pis~k~l~~PS-~k~F~~IFK~LY~~lDp~ 153 (622)
T COG5185 97 PRPLRDKNYQQACQEEIYDYLKENGFDI-PISIKFLKQPS-QKGFIIIFKWLYLRLDPG 153 (622)
T ss_pred CcccccchHHHHHHHHHHHHHHHcCCCc-chhHHHhcCCc-cccHHHHHHHHHhccCCC
Confidence 3558899999999999999999999998 22222111222 346888888888777643
No 175
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=25.52 E-value=56 Score=29.68 Aligned_cols=11 Identities=36% Similarity=0.972 Sum_probs=8.5
Q ss_pred HHHHHHhhhcc
Q 043488 395 FLLYYYCWMKN 405 (409)
Q Consensus 395 ~~~~~~~~~~~ 405 (409)
.++|.+||-+.
T Consensus 208 vgLyr~C~k~d 218 (259)
T PF07010_consen 208 VGLYRMCWKTD 218 (259)
T ss_pred HHHHHHhhcCC
Confidence 46899999764
No 176
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=24.72 E-value=2.6e+02 Score=26.93 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=28.7
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCeEEEeeeccC
Q 043488 111 GNPSFRKYFIDSSIKIARLYGFQGLDLSWNQAN 143 (409)
Q Consensus 111 ~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~ 143 (409)
.+|+.|+-+.+.+.+++.+.|+||+=+|+-.|.
T Consensus 130 tnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~ 162 (317)
T cd06600 130 TNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPS 162 (317)
T ss_pred CChHHHHHHHHHHHHHhhcCCCceEEeeCCCCc
Confidence 679999999988888888999999999986554
No 177
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.56 E-value=63 Score=26.19 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=13.3
Q ss_pred eehHHHHHHHHHHHHHHHHHhh
Q 043488 381 IVLPITTACILLIGFLLYYYCW 402 (409)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~ 402 (409)
.++-+++++|+++.+++|+..|
T Consensus 95 ~~il~~v~~i~l~iiii~~~~~ 116 (116)
T KOG0860|consen 95 RIILGLVIIILLVVIIIYIFLW 116 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555666666677776544
No 178
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=23.91 E-value=2.8e+02 Score=26.42 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=22.1
Q ss_pred cCChhHHHHHHHHHHHHHHHcCCCeEEEeeec
Q 043488 110 AGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQ 141 (409)
Q Consensus 110 ~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~ 141 (409)
+.+|+.|+-+.+ .++-+.++|+||+-+|+-.
T Consensus 129 ftnp~a~~w~~~-~~~~~~~~Gid~~~~D~~e 159 (308)
T cd06593 129 FTNPDACKWYKD-KLKPLLDMGVDCFKTDFGE 159 (308)
T ss_pred CCCHHHHHHHHH-HHHHHHHhCCcEEecCCCC
Confidence 356778866654 4455666899999999854
No 179
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=23.57 E-value=27 Score=33.28 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=0.0
Q ss_pred eeehHHHHHHHHHHHHHHHHHhhhccc
Q 043488 380 AIVLPITTACILLIGFLLYYYCWMKNL 406 (409)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (409)
.+|++++++++||++.++-.+|+.|+-
T Consensus 148 T~IpaVVI~~iLLIA~iIa~icyrrkR 174 (290)
T PF05454_consen 148 TFIPAVVIAAILLIAGIIACICYRRKR 174 (290)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 455777777788888888888877654
No 180
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=23.54 E-value=4.2e+02 Score=29.07 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHhhCCCcE---EEEEE-cCCCC--CCCcccc----------------------------cccCChhHHHH
Q 043488 73 KQFSNFTDTVKIKNPSIT---TLLSI-GGGNN--PNYSSYS----------------------------SMAGNPSFRKY 118 (409)
Q Consensus 73 ~~~~~~~~~lk~~~p~~k---vllsi-GG~~~--~~~~~~~----------------------------~~~~~~~~r~~ 118 (409)
..++.+++.+|+++|++| |+-++ |=|++ |+...+. --+-+|+....
T Consensus 390 ~Glk~~v~~ik~k~~~vk~VyVWHAL~GYWGGV~P~~~~y~~k~~~p~~spg~~~~~~d~a~d~i~~~G~glv~P~~~~~ 469 (865)
T PLN02982 390 SGMKAFTRDLRTKFKGLDDIYVWHALCGAWGGVRPGTTHLNAKVVPARLSPGLDGTMNDLAVDKIVEGGIGLVHPSQAGD 469 (865)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEeeeccCcccCcCCCCCCCcceEEecccCccccccCcchhhhheecCceeccCHHHHHH
Confidence 478889999999998765 44444 33443 2221110 11235888899
Q ss_pred HHHHHHHHHHHcCCCeEEEeeec
Q 043488 119 FIDSSIKIARLYGFQGLDLSWNQ 141 (409)
Q Consensus 119 fi~sii~~l~~~~~DGIdiDwE~ 141 (409)
|-+...++|...|+|||-+|-..
T Consensus 470 FYd~~hsyLas~GVDgVKVDvQ~ 492 (865)
T PLN02982 470 FYDSMHSYLASVGITGVKVDVIH 492 (865)
T ss_pred HHHHHHHHHHHcCCCeEEEchhh
Confidence 99999999999999999999765
No 181
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=23.17 E-value=3.5e+02 Score=26.89 Aligned_cols=60 Identities=5% Similarity=0.035 Sum_probs=34.5
Q ss_pred CcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeee--ccCCcccHhhHHHHHHHHHHHHHHHhh
Q 043488 103 YSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWN--QANTSRDKYNIGILFKEWRAAVALEAR 167 (409)
Q Consensus 103 ~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE--~p~~~~~~~~~~~ll~~Lr~~l~~~~~ 167 (409)
.+.|....+..- ... ..++.+.+.|||||++... +|.. .+...-..-++++++.+++.+.
T Consensus 21 ~~~~g~~~~~~~---~~~-e~i~~la~~GfdgVE~~~~dl~P~~-~~~~e~~~~~~~lk~~L~~~GL 82 (382)
T TIGR02631 21 RDPFGDATRTAL---DPV-EAVHKLAELGAYGVTFHDDDLIPFG-APPQERDQIVRRFKKALDETGL 82 (382)
T ss_pred CCCCCCCCCCCc---CHH-HHHHHHHHhCCCEEEecccccCCCC-CChhHHHHHHHHHHHHHHHhCC
Confidence 455655544322 222 4556678889999999743 2322 1111112457889999988763
No 182
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=22.93 E-value=1.4e+02 Score=27.43 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHh
Q 043488 120 IDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEA 166 (409)
Q Consensus 120 i~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~ 166 (409)
....++.+.+.|||||++.+.+ . .-++++++.+++.+
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~--~--------~~~~~l~~~l~~~g 52 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPY--D--------WDAEALKARLAAAG 52 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCc--c--------CCHHHHHHHHHHcC
Confidence 4567888889999999997632 1 12567777777665
No 183
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=22.77 E-value=3.6e+02 Score=24.21 Aligned_cols=75 Identities=13% Similarity=0.163 Sum_probs=46.5
Q ss_pred ccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCcc
Q 043488 107 SSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSPL 186 (409)
Q Consensus 107 ~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~~~ 186 (409)
+-|+.+|+ + .++-+.+-|.+.+-|+.|... + ...+++.+| +.+ ....+++-+...
T Consensus 70 HmMV~~Pe---q----~V~~~a~agas~~tfH~E~~q---~---~~~lv~~ir----~~G--------mk~G~alkPgT~ 124 (224)
T KOG3111|consen 70 HMMVENPE---Q----WVDQMAKAGASLFTFHYEATQ---K---PAELVEKIR----EKG--------MKVGLALKPGTP 124 (224)
T ss_pred EEeecCHH---H----HHHHHHhcCcceEEEEEeecc---C---HHHHHHHHH----HcC--------CeeeEEeCCCCc
Confidence 45677774 2 334445569999999999322 1 334555554 333 467777754433
Q ss_pred cccCCCChhHHhccccEEEeeccC
Q 043488 187 STAAAYPVDSIRQYLNWVHVITTE 210 (409)
Q Consensus 187 ~~~~~y~~~~l~~~vD~v~vm~YD 210 (409)
.. ++..+.+.+|.+.|||-.
T Consensus 125 Ve----~~~~~~~~~D~vLvMtVe 144 (224)
T KOG3111|consen 125 VE----DLEPLAEHVDMVLVMTVE 144 (224)
T ss_pred HH----HHHHhhccccEEEEEEec
Confidence 32 345567789999999963
No 184
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=22.38 E-value=6.3e+02 Score=23.44 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=46.2
Q ss_pred cccccccCChhHHHH---HHHHHHHHHHHcC-----CCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHhhcCCCCcee
Q 043488 104 SSYSSMAGNPSFRKY---FIDSSIKIARLYG-----FQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQL 175 (409)
Q Consensus 104 ~~~~~~~~~~~~r~~---fi~sii~~l~~~~-----~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~ 175 (409)
..|.--..|++.|++ .-...+.+.++.| +-|.|+.+| +.|.+.-..|++-|+.+..-..+ .
T Consensus 79 RRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE----~~d~eT~~rFi~g~~~a~~lA~~-------a 147 (287)
T COG3623 79 RRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYE----EADEETRQRFIEGLKWAVELAAR-------A 147 (287)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeec----cCCHHHHHHHHHHHHHHHHHHHh-------h
Confidence 345444566777664 4557777887777 678899999 45555666888888888776544 5
Q ss_pred EEEEEee
Q 043488 176 ILTAKVA 182 (409)
Q Consensus 176 ~Ls~a~~ 182 (409)
.+++++.
T Consensus 148 qV~lAvE 154 (287)
T COG3623 148 QVMLAVE 154 (287)
T ss_pred ccEEEee
Confidence 5666664
No 185
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=22.23 E-value=1.5e+02 Score=26.91 Aligned_cols=66 Identities=15% Similarity=0.252 Sum_probs=36.8
Q ss_pred EEEEEEcCCCCCCCcc-----------cccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHH
Q 043488 90 TTLLSIGGGNNPNYSS-----------YSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEW 158 (409)
Q Consensus 90 kvllsiGG~~~~~~~~-----------~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~L 158 (409)
++++.+||.-. ... |..++.+-....-=-+-+.+.+++.+.+-+-|||....+ .++..+..+++++
T Consensus 131 ~~~ig~GG~HY--apr~t~~~l~~~~~~GHi~~ky~l~~l~~~~l~~a~~~s~~~~a~id~K~l~~-~~r~~i~~~l~~~ 207 (213)
T PF04414_consen 131 PVAIGFGGGHY--APRFTKLALETEYAFGHIIPKYALDELDEDVLRQAIEKSGADVAIIDWKSLKS-EDRRRIEELLEEL 207 (213)
T ss_dssp EEEEEE-S-TT---HHHHHHHHHCSEEEEEEE-GGGGGG--HHHHHHHHCHCT-SEEEEETTTS-H-HHHHHHHHHHHHH
T ss_pred ceeEEecCccc--chhhhhhhhcCCeEEEeeccCcchhhcCHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHHHHHc
Confidence 99999999765 332 334443321111112335556666788999999987764 6777666666655
No 186
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=22.21 E-value=1.5e+02 Score=18.25 Aligned_cols=22 Identities=32% Similarity=0.270 Sum_probs=16.5
Q ss_pred eehHHHHHHHHHHHHHHHHHhh
Q 043488 381 IVLPITTACILLIGFLLYYYCW 402 (409)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~ 402 (409)
..+-+++++||++=+.+|+...
T Consensus 10 ~vv~iLt~~ILvFWfgvf~~fl 31 (34)
T PF08113_consen 10 GVVMILTAFILVFWFGVFALFL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHhhe
Confidence 4456778888888888887653
No 187
>PF04688 Phage_holin: Phage lysis protein, holin; InterPro: IPR006479 This entry represents the Bacteriophage SP-beta, BhlB, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=21.75 E-value=1.3e+02 Score=20.12 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 043488 387 TACILLIGFLLYYYCWMKNL 406 (409)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~ 406 (409)
.++..+|+++.-++.|.||=
T Consensus 14 ~~~s~v~t~~~~l~awwKNN 33 (47)
T PF04688_consen 14 QLISAVFTIVTALYAWWKNN 33 (47)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 34477888888889999984
No 188
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=21.54 E-value=4.2e+02 Score=28.89 Aligned_cols=92 Identities=15% Similarity=0.139 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHhhCCCcEEE---EEEcC-CCC--CCCcc------------------ccc-----------ccCChhHH
Q 043488 72 EKQFSNFTDTVKIKNPSITTL---LSIGG-GNN--PNYSS------------------YSS-----------MAGNPSFR 116 (409)
Q Consensus 72 ~~~~~~~~~~lk~~~p~~kvl---lsiGG-~~~--~~~~~------------------~~~-----------~~~~~~~r 116 (409)
...+..+++.+|+++|++|-+ .++-| |++ |+... ... -+-+|+..
T Consensus 287 ~~GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~k~~~~~~spg~~~~~~d~~~d~~~~~g~glv~p~~~ 366 (747)
T PF05691_consen 287 PSGLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYNYKLVYPKLSPGLQGNMPDLAVDSIVKGGLGLVDPEDA 366 (747)
T ss_pred cccHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCccccccceeecccCCcccccCccccccccccCcccccCHHHH
Confidence 356788999999999888744 44422 333 21110 000 12467788
Q ss_pred HHHHHHHHHHHHHcCCCeEEEeeeccCCc--ccHhhHHHHHHHHHHHHH
Q 043488 117 KYFIDSSIKIARLYGFQGLDLSWNQANTS--RDKYNIGILFKEWRAAVA 163 (409)
Q Consensus 117 ~~fi~sii~~l~~~~~DGIdiDwE~p~~~--~~~~~~~~ll~~Lr~~l~ 163 (409)
..|-+...++|..-|+|||-+|-+..... +....-+.+.+..++++.
T Consensus 367 ~~FYd~~hsyL~s~GVDgVKVD~Q~~l~~l~~~~ggrv~la~ay~~AL~ 415 (747)
T PF05691_consen 367 FRFYDDFHSYLASAGVDGVKVDVQAILETLGEGYGGRVELARAYQDALE 415 (747)
T ss_pred HHHHHHHHHHHHHcCCCEEEEchhhhhhhhhccCCcHHHHHHHHHHHHH
Confidence 99999999999999999999997654320 111122455555555554
No 189
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=21.35 E-value=2.9e+02 Score=25.33 Aligned_cols=77 Identities=18% Similarity=0.140 Sum_probs=45.1
Q ss_pred cccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCc
Q 043488 106 YSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVALEARNNSSQSQLILTAKVAYSP 185 (409)
Q Consensus 106 ~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~~~~~~~~~~~~~Ls~a~~~~~ 185 (409)
.+-|+.+|. ++++. +.+.|.|=|-|..|-.. .....+++.+|+. + ....+++-+..
T Consensus 64 vHLMv~~P~---~~i~~----~~~aGad~it~H~Ea~~-----~~~~~~i~~Ik~~----G--------~kaGlalnP~T 119 (229)
T PRK09722 64 VHLMVTDPQ---DYIDQ----LADAGADFITLHPETIN-----GQAFRLIDEIRRA----G--------MKVGLVLNPET 119 (229)
T ss_pred EEEEecCHH---HHHHH----HHHcCCCEEEECccCCc-----chHHHHHHHHHHc----C--------CCEEEEeCCCC
Confidence 456676663 45443 34459999999999321 1233455555433 3 23455554332
Q ss_pred ccccCCCChhHHhccccEEEeeccC
Q 043488 186 LSTAAAYPVDSIRQYLNWVHVITTE 210 (409)
Q Consensus 186 ~~~~~~y~~~~l~~~vD~v~vm~YD 210 (409)
... .+..+.+.+|+|.+|+-+
T Consensus 120 ~~~----~l~~~l~~vD~VLvMsV~ 140 (229)
T PRK09722 120 PVE----SIKYYIHLLDKITVMTVD 140 (229)
T ss_pred CHH----HHHHHHHhcCEEEEEEEc
Confidence 221 355677889999999975
No 190
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=21.29 E-value=1.4e+02 Score=27.83 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCCeEEEeeeccCCc-ccHhhHHHHHHHHHHHHHHHhh
Q 043488 122 SSIKIARLYGFQGLDLSWNQANTS-RDKYNIGILFKEWRAAVALEAR 167 (409)
Q Consensus 122 sii~~l~~~~~DGIdiDwE~p~~~-~~~~~~~~ll~~Lr~~l~~~~~ 167 (409)
..++.+.+.|||||+|....+... ........-++++++.+.+.+.
T Consensus 20 e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 66 (279)
T TIGR00542 20 ERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGV 66 (279)
T ss_pred HHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCC
Confidence 567888999999999965432110 0001124567888888887753
No 191
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=20.99 E-value=2.2e+02 Score=23.80 Aligned_cols=55 Identities=7% Similarity=0.032 Sum_probs=42.0
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCeEEEe-eeccCCcccHhhHHHHHHHHHHHHHHH
Q 043488 111 GNPSFRKYFIDSSIKIARLYGFQGLDLS-WNQANTSRDKYNIGILFKEWRAAVALE 165 (409)
Q Consensus 111 ~~~~~r~~fi~sii~~l~~~~~DGIdiD-wE~p~~~~~~~~~~~ll~~Lr~~l~~~ 165 (409)
-+|+.-..+.+.+++++++.+-.-|-|| .||..-..+-+....|+..||...-..
T Consensus 55 I~Pt~L~~l~~~i~~fl~~~~~~vViiD~lEYL~l~NgF~~v~KFL~~LkD~~~~~ 110 (136)
T PF05763_consen 55 ISPTNLHKLLDTIVRFLKENGNGVVIIDGLEYLILENGFESVLKFLASLKDYALLN 110 (136)
T ss_pred cCchhhHHHHHHHHHHHHhCCCcEEEEecHHHHHHHcCHHHHHHHHHHhHHHeecc
Confidence 3688888999999999999665577888 588765456667778888888776443
No 192
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=20.98 E-value=2.2e+02 Score=29.66 Aligned_cols=54 Identities=20% Similarity=0.160 Sum_probs=35.7
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCeEEEee-eccC----C-cccHhhHHHHHHHHHHHHHHH
Q 043488 111 GNPSFRKYFIDSSIKIARLYGFQGLDLSW-NQAN----T-SRDKYNIGILFKEWRAAVALE 165 (409)
Q Consensus 111 ~~~~~r~~fi~sii~~l~~~~~DGIdiDw-E~p~----~-~~~~~~~~~ll~~Lr~~l~~~ 165 (409)
.+++.|+.+++.+..+++ +|+||+-+|- .+.. . ..+...-..|++++++.+++.
T Consensus 171 ~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~ 230 (539)
T TIGR02456 171 DNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDRE 230 (539)
T ss_pred CCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHh
Confidence 467778888877777776 8999999994 2221 0 011111236888888888765
No 193
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=20.86 E-value=86 Score=17.52 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=16.9
Q ss_pred EEEECCHHHHHHHHHHHHHcCC
Q 043488 323 WFGFDDVEAVRVKVAYAKEKKL 344 (409)
Q Consensus 323 ~i~ydd~~Sl~~K~~~~~~~gl 344 (409)
.+.++ .++++.+++|.++.|+
T Consensus 10 il~~~-~~~l~~~~~~l~~~g~ 30 (31)
T smart00733 10 ILGYS-EKKLKPKVEFLKELGF 30 (31)
T ss_pred ccccc-HHHhhHHHHHHHHcCC
Confidence 34566 9999999999997765
No 194
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=20.49 E-value=48 Score=28.26 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=16.9
Q ss_pred eeEeeehHHHHHHHHHHHHHHHHHhhh
Q 043488 377 LLWAIVLPITTACILLIGFLLYYYCWM 403 (409)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (409)
++.=+.+=+.+++||++..++|++|..
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c~r 76 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFCIR 76 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEEEe
Confidence 333466667777777666666666644
No 195
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=20.35 E-value=4.9e+02 Score=26.64 Aligned_cols=80 Identities=9% Similarity=0.062 Sum_probs=54.9
Q ss_pred ccEEEEEEEEEeCCCeEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCccccc---ccCChhHHHHHHHHHH
Q 043488 48 FTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSSYSS---MAGNPSFRKYFIDSSI 124 (409)
Q Consensus 48 ~Thii~~f~~i~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGG~~~~~~~~~~~---~~~~~~~r~~fi~sii 124 (409)
|=.+.++|.++-|++..-......-..+..+...++++ |++.++++--|..| ..... -..|.+..+.|++=+.
T Consensus 75 ~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~--gIep~vTL~Hfd~P--~~L~~~ygGW~nR~~i~~F~~ya~ 150 (460)
T COG2723 75 AFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKAR--GIEPFVTLYHFDLP--LWLQKPYGGWENRETVDAFARYAA 150 (460)
T ss_pred EEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEecccCCc--HHHhhccCCccCHHHHHHHHHHHH
Confidence 55677888888887644344444556678888888888 79999998666552 11111 1345677778888777
Q ss_pred HHHHHcC
Q 043488 125 KIARLYG 131 (409)
Q Consensus 125 ~~l~~~~ 131 (409)
...++++
T Consensus 151 ~vf~~f~ 157 (460)
T COG2723 151 TVFERFG 157 (460)
T ss_pred HHHHHhc
Confidence 7778776
No 196
>PF10840 DUF2645: Protein of unknown function (DUF2645); InterPro: IPR022553 This family of proteins appears to be restricted to Enterobacteriaceae. Some members in the family are annotated as inner membrane protein YjeO. However no function is currently known.
Probab=20.30 E-value=1.7e+02 Score=23.23 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=25.3
Q ss_pred EeccCCCchhHHHHHHHhhhcccCccceeEeeehHHHHHHHHHH
Q 043488 350 WEVSSDHYWMLSQAAAEEDKRNRQNKRLLWAIVLPITTACILLI 393 (409)
Q Consensus 350 W~l~~Dd~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (409)
|-+|..|-..+|.+-+...+++...- ++++++|....+++++
T Consensus 30 wmIdg~eI~n~C~vp~~~~~dD~r~~--~~~~~l~l~iP~fi~~ 71 (103)
T PF10840_consen 30 WMIDGGEIKNLCDVPRALVVDDIRDF--GAIIILPLFIPFFIAL 71 (103)
T ss_pred hhcCCcchhhHHHhhhhhccCCcccc--chHHHHHHHHHHHHHH
Confidence 44666677788887776654433322 4456667666666555
No 197
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=20.23 E-value=5.6e+02 Score=23.47 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEcCCCCCC---Ccccccc----cCChhHHHHHHHHHHHHHHHcCCCeEEE
Q 043488 72 EKQFSNFTDTVKIKNPSITTLLSIGGGNNPN---YSSYSSM----AGNPSFRKYFIDSSIKIARLYGFQGLDL 137 (409)
Q Consensus 72 ~~~~~~~~~~lk~~~p~~kvllsiGG~~~~~---~~~~~~~----~~~~~~r~~fi~sii~~l~~~~~DGIdi 137 (409)
.+.++.+++-+|...|..++++---+--+.. ....+.. .+.-+.-..+++.++++.++-|+++||+
T Consensus 99 ~dNlr~iv~~lks~~~~~riIlitPpp~de~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac~~la~e~~l~~vdl 171 (245)
T KOG3035|consen 99 KDNLRKIVSHLKSLSPETRIILITPPPVDEEAWEKQEQEPYVLGPERTNETVGTYAKACANLAQEIGLYVVDL 171 (245)
T ss_pred HHHHHHHHHHhhccCCcceEEEecCCCcCHHHHHHHhccchhccchhhhhHHHHHHHHHHHHHHHhCCeeeeH
Confidence 4456777777788778787776543322200 0111111 2334556678999999999999999999
No 198
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=20.11 E-value=3e+02 Score=30.80 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=45.4
Q ss_pred CCCcEEE-EEEcCCCCCCCcccccccCChhHHHHHHHHHHHHHHHcCCCeEEEeeeccCCcccHhhHHHHHHHHHHHHHH
Q 043488 86 NPSITTL-LSIGGGNNPNYSSYSSMAGNPSFRKYFIDSSIKIARLYGFQGLDLSWNQANTSRDKYNIGILFKEWRAAVAL 164 (409)
Q Consensus 86 ~p~~kvl-lsiGG~~~~~~~~~~~~~~~~~~r~~fi~sii~~l~~~~~DGIdiDwE~p~~~~~~~~~~~ll~~Lr~~l~~ 164 (409)
.||.+++ +.||... +.+-+.-..|++.++..++ ++.|=|++.+-.+ ....+...+++.+|+...+
T Consensus 334 APgaqIvSl~IGD~R----------LgsMETgtaltRA~~~v~e-~~vDiINmSyGE~---a~~pn~GRviEl~~e~vnK 399 (1304)
T KOG1114|consen 334 APGAQIVSLKIGDGR----------LGSMETGTALTRAMIEVIE-HNVDIINMSYGED---AHLPNSGRVIELLRELVNK 399 (1304)
T ss_pred CCCCEEEEEEecCcc----------ccccccchHHHHHHHHHHH-hcCCEEEeccCcc---CCCCCcchHHHHHHHHhhh
Confidence 4788887 6777533 2233444678888877777 6899999998533 3345566777777777776
Q ss_pred Hh
Q 043488 165 EA 166 (409)
Q Consensus 165 ~~ 166 (409)
.+
T Consensus 400 r~ 401 (1304)
T KOG1114|consen 400 RG 401 (1304)
T ss_pred cc
Confidence 54
Done!