BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043490
         (589 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QFC|A Chain A, Crystal Structure Of Bacillus Thuringiensis Plcr Complexed
           With Papr
 pdb|2QFC|B Chain B, Crystal Structure Of Bacillus Thuringiensis Plcr Complexed
           With Papr
 pdb|3U3W|A Chain A, Crystal Structure Of Bacillus Thuringiensis Plcr In
           Complex With The Peptide Papr7 And Dna
 pdb|3U3W|B Chain B, Crystal Structure Of Bacillus Thuringiensis Plcr In
           Complex With The Peptide Papr7 And Dna
          Length = 293

 Score = 30.0 bits (66), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 22/32 (68%)

Query: 40  QDLFVTNHLINMYAKFGYLDDARHLFDEMPKR 71
           Q+L++ N + N+YA+ GYL     LF+++ K+
Sbjct: 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184


>pdb|3VMF|A Chain A, Archaeal Protein
          Length = 440

 Score = 30.0 bits (66), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 396 GETRLAELAATKLKQLEPGDSLGF 419
           GE R  E+   +L+Q EPGD++GF
Sbjct: 277 GEVRSIEMHYQQLQQAEPGDNIGF 300


>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
           Alpha Complex
 pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
           Alpha Complex
 pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
           Alpha Complex
 pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
           Alpha Complex
          Length = 437

 Score = 30.0 bits (66), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 396 GETRLAELAATKLKQLEPGDSLGF 419
           GE R  E+   +L+Q EPGD++GF
Sbjct: 274 GEVRSIEMHYQQLQQAEPGDNIGF 297


>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
           Factor 1 Alpha In Complex With Gdp
 pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
           Factor 1 Alpha In Complex With Gdp
 pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
           Elongation Factor 1-Alpha In Complex With Magnesium And
           Gdp
 pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
           Elongation Factor 1-Alpha In Complex With Magnesium And
           Gdp
          Length = 435

 Score = 29.6 bits (65), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 394 KHGETRLAELAATKLKQLEPGDSLGF 419
           K GE R  E   TK+ + EPGD++GF
Sbjct: 272 KVGEVRSIETHHTKMDKAEPGDNIGF 297


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,365,799
Number of Sequences: 62578
Number of extensions: 693763
Number of successful extensions: 2195
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2189
Number of HSP's gapped (non-prelim): 8
length of query: 589
length of database: 14,973,337
effective HSP length: 104
effective length of query: 485
effective length of database: 8,465,225
effective search space: 4105634125
effective search space used: 4105634125
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)