Query 043490
Match_columns 589
No_of_seqs 758 out of 4328
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 05:36:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1E-117 2E-122 966.2 65.9 570 1-589 119-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 8E-112 2E-116 941.8 65.4 565 1-587 284-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 1.7E-71 3.7E-76 618.5 42.7 547 2-581 83-676 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.3E-60 2.8E-65 521.8 53.8 432 3-452 435-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 3.5E-60 7.6E-65 518.4 50.8 517 3-568 368-912 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.1E-58 2.3E-63 504.1 42.1 476 71-583 85-582 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-25 3.2E-30 254.5 48.9 429 6-443 432-898 (899)
8 PF14432 DYW_deaminase: DYW fa 100.0 5.7E-30 1.2E-34 206.3 7.3 106 452-579 2-116 (116)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-24 2.7E-29 246.9 50.7 435 4-447 362-868 (899)
10 KOG4626 O-linked N-acetylgluco 99.9 2.4E-19 5.1E-24 175.2 29.0 397 14-434 91-508 (966)
11 PRK11447 cellulose synthase su 99.9 2.4E-17 5.2E-22 189.0 50.4 430 9-445 116-700 (1157)
12 TIGR00990 3a0801s09 mitochondr 99.9 7.4E-18 1.6E-22 181.4 42.5 421 7-445 129-571 (615)
13 KOG4626 O-linked N-acetylgluco 99.9 9.7E-20 2.1E-24 177.9 24.7 414 8-446 51-486 (966)
14 PRK11447 cellulose synthase su 99.9 3.7E-17 8.1E-22 187.5 48.7 423 13-448 277-744 (1157)
15 PRK11788 tetratricopeptide rep 99.9 8.8E-19 1.9E-23 178.9 31.0 287 148-452 45-354 (389)
16 PRK11788 tetratricopeptide rep 99.8 1.8E-18 4E-23 176.6 31.7 284 49-376 42-344 (389)
17 PRK10049 pgaA outer membrane p 99.8 2.9E-16 6.4E-21 172.2 42.7 391 5-446 15-457 (765)
18 PRK09782 bacteriophage N4 rece 99.8 2.6E-15 5.5E-20 165.1 48.0 432 4-446 180-707 (987)
19 PRK09782 bacteriophage N4 rece 99.8 2.1E-15 4.6E-20 165.8 46.8 418 17-446 56-673 (987)
20 PRK15174 Vi polysaccharide exp 99.8 2.7E-16 5.9E-21 168.9 38.3 314 11-376 48-378 (656)
21 PRK15174 Vi polysaccharide exp 99.8 3.8E-16 8.2E-21 167.8 36.9 321 46-415 46-385 (656)
22 PRK10049 pgaA outer membrane p 99.8 4.3E-15 9.3E-20 163.1 41.7 367 5-418 49-463 (765)
23 TIGR00990 3a0801s09 mitochondr 99.8 1.3E-14 2.8E-19 156.4 41.5 384 2-415 157-575 (615)
24 PRK14574 hmsH outer membrane p 99.8 1.2E-13 2.7E-18 148.9 46.3 412 14-446 43-514 (822)
25 KOG4422 Uncharacterized conser 99.7 1.3E-12 2.7E-17 123.4 36.9 388 6-412 117-591 (625)
26 KOG2002 TPR-containing nuclear 99.6 1.2E-12 2.7E-17 135.5 34.4 425 3-446 268-746 (1018)
27 PRK14574 hmsH outer membrane p 99.6 3.5E-12 7.5E-17 137.8 39.8 398 10-418 73-520 (822)
28 KOG2002 TPR-containing nuclear 99.6 2E-12 4.3E-17 134.0 34.5 420 7-448 309-801 (1018)
29 KOG2003 TPR repeat-containing 99.6 5.9E-13 1.3E-17 126.3 26.5 416 9-432 205-710 (840)
30 PF13429 TPR_15: Tetratricopep 99.6 7.8E-15 1.7E-19 142.1 10.8 247 192-443 19-275 (280)
31 KOG1915 Cell cycle control pro 99.5 2E-10 4.4E-15 110.1 36.6 398 7-455 75-510 (677)
32 PRK10747 putative protoheme IX 99.5 3.4E-11 7.3E-16 122.2 32.1 273 149-443 96-388 (398)
33 KOG4422 Uncharacterized conser 99.5 1E-10 2.2E-15 110.8 30.1 344 73-446 116-552 (625)
34 KOG1126 DNA-binding cell divis 99.5 7.7E-12 1.7E-16 125.1 23.7 275 152-447 334-622 (638)
35 KOG0495 HAT repeat protein [RN 99.5 2.3E-09 4.9E-14 107.0 40.2 259 192-459 629-892 (913)
36 KOG2076 RNA polymerase III tra 99.5 3.8E-09 8.2E-14 109.4 41.7 423 17-443 151-732 (895)
37 PRK10747 putative protoheme IX 99.5 4.4E-11 9.6E-16 121.3 27.7 280 55-411 97-390 (398)
38 KOG0547 Translocase of outer m 99.5 6.1E-10 1.3E-14 107.4 32.7 400 8-443 118-564 (606)
39 KOG1126 DNA-binding cell divis 99.4 1E-11 2.3E-16 124.2 20.6 243 196-445 334-586 (638)
40 KOG2076 RNA polymerase III tra 99.4 2.4E-10 5.1E-15 118.1 30.5 357 50-456 147-523 (895)
41 KOG1155 Anaphase-promoting com 99.4 6.4E-10 1.4E-14 106.6 31.0 245 192-444 273-535 (559)
42 KOG4318 Bicoid mRNA stability 99.4 9.2E-11 2E-15 120.5 26.6 422 2-456 22-604 (1088)
43 TIGR00540 hemY_coli hemY prote 99.4 5.1E-10 1.1E-14 114.2 32.5 249 146-408 126-396 (409)
44 TIGR00540 hemY_coli hemY prote 99.4 4.3E-10 9.3E-15 114.8 31.6 273 151-443 98-397 (409)
45 KOG1155 Anaphase-promoting com 99.4 1.2E-09 2.5E-14 104.9 30.4 308 133-444 159-494 (559)
46 KOG1915 Cell cycle control pro 99.4 1.3E-08 2.8E-13 98.0 37.3 414 7-443 109-583 (677)
47 PF13429 TPR_15: Tetratricopep 99.4 1.8E-12 3.9E-17 125.6 11.3 249 47-341 13-275 (280)
48 KOG1173 Anaphase-promoting com 99.4 6.3E-09 1.4E-13 102.5 34.1 425 7-444 18-517 (611)
49 KOG0495 HAT repeat protein [RN 99.4 1E-08 2.2E-13 102.4 35.9 361 6-422 517-891 (913)
50 TIGR02521 type_IV_pilW type IV 99.4 1.9E-10 4E-15 108.1 22.6 197 248-444 28-231 (234)
51 KOG2003 TPR repeat-containing 99.3 7.3E-10 1.6E-14 105.6 25.0 389 14-408 246-719 (840)
52 KOG4318 Bicoid mRNA stability 99.3 3.6E-11 7.7E-16 123.4 16.4 263 202-501 11-274 (1088)
53 COG3071 HemY Uncharacterized e 99.3 1.4E-08 3E-13 96.2 30.7 280 143-444 87-389 (400)
54 PF13041 PPR_2: PPR repeat fam 99.3 1.3E-11 2.7E-16 84.3 7.0 50 166-228 1-50 (50)
55 KOG1840 Kinesin light chain [C 99.2 1.6E-09 3.6E-14 109.7 22.4 228 216-443 199-477 (508)
56 PRK12370 invasion protein regu 99.2 3.3E-09 7.1E-14 112.6 25.7 245 195-447 275-537 (553)
57 COG2956 Predicted N-acetylgluc 99.2 2.1E-08 4.5E-13 92.3 26.3 213 55-308 48-275 (389)
58 KOG1174 Anaphase-promoting com 99.2 7.2E-07 1.6E-11 84.9 35.4 408 12-444 50-499 (564)
59 COG2956 Predicted N-acetylgluc 99.2 4.7E-08 1E-12 90.0 26.8 294 141-453 39-355 (389)
60 KOG0547 Translocase of outer m 99.2 1.3E-07 2.8E-12 91.8 30.4 382 2-412 145-567 (606)
61 KOG1840 Kinesin light chain [C 99.2 2E-08 4.3E-13 101.9 26.1 237 133-410 194-478 (508)
62 TIGR02521 type_IV_pilW type IV 99.2 1.4E-08 3E-13 95.2 23.5 196 215-413 30-234 (234)
63 COG3071 HemY Uncharacterized e 99.1 4.6E-07 1E-11 86.1 32.0 284 77-411 86-390 (400)
64 PRK12370 invasion protein regu 99.1 7.5E-09 1.6E-13 109.8 22.3 224 215-444 255-501 (553)
65 KOG4162 Predicted calmodulin-b 99.1 6.3E-07 1.4E-11 91.8 33.6 396 40-456 321-793 (799)
66 KOG2047 mRNA splicing factor [ 99.1 4E-06 8.6E-11 84.3 38.0 431 5-443 102-613 (835)
67 PF12569 NARP1: NMDA receptor- 99.1 1.7E-06 3.7E-11 89.1 36.9 405 11-441 10-516 (517)
68 PRK11189 lipoprotein NlpI; Pro 99.1 2.4E-08 5.2E-13 97.1 21.6 212 229-447 39-267 (296)
69 PF13041 PPR_2: PPR repeat fam 99.1 3.5E-10 7.5E-15 77.1 6.2 50 214-263 1-50 (50)
70 PRK11189 lipoprotein NlpI; Pro 99.1 9.7E-08 2.1E-12 92.8 24.9 221 192-418 37-272 (296)
71 KOG1173 Anaphase-promoting com 99.0 1.6E-07 3.4E-12 92.9 24.8 273 136-423 242-530 (611)
72 KOG2047 mRNA splicing factor [ 99.0 2.7E-05 5.8E-10 78.6 40.0 426 7-445 140-687 (835)
73 KOG2376 Signal recognition par 99.0 6.9E-06 1.5E-10 81.9 35.4 406 11-442 18-517 (652)
74 KOG3785 Uncharacterized conser 99.0 9.7E-07 2.1E-11 82.3 27.1 405 13-447 30-492 (557)
75 KOG1174 Anaphase-promoting com 99.0 2.8E-06 6.1E-11 80.9 30.0 272 131-418 225-507 (564)
76 KOG1129 TPR repeat-containing 99.0 3E-08 6.4E-13 91.2 16.3 226 217-446 224-459 (478)
77 KOG1156 N-terminal acetyltrans 99.0 1.3E-05 2.9E-10 80.9 35.7 401 8-458 11-486 (700)
78 COG3063 PilF Tfp pilus assembl 98.9 7E-08 1.5E-12 84.9 16.9 159 286-447 39-204 (250)
79 KOG3616 Selective LIM binding 98.9 2.2E-06 4.8E-11 87.0 26.6 204 173-403 724-929 (1636)
80 KOG1129 TPR repeat-containing 98.8 2.1E-07 4.6E-12 85.7 16.2 217 77-340 227-455 (478)
81 COG3063 PilF Tfp pilus assembl 98.8 1.3E-06 2.8E-11 77.1 19.6 187 256-442 40-233 (250)
82 KOG0624 dsRNA-activated protei 98.8 2.1E-05 4.5E-10 73.4 28.2 312 40-417 36-376 (504)
83 KOG4340 Uncharacterized conser 98.8 1.8E-05 3.8E-10 72.4 26.9 283 8-338 13-334 (459)
84 PF12569 NARP1: NMDA receptor- 98.8 4E-06 8.7E-11 86.4 25.8 262 191-458 14-309 (517)
85 KOG1125 TPR repeat-containing 98.8 2E-07 4.3E-12 92.6 14.6 216 227-444 296-526 (579)
86 PF04733 Coatomer_E: Coatomer 98.7 2.2E-07 4.7E-12 89.1 14.6 242 192-445 12-265 (290)
87 KOG4162 Predicted calmodulin-b 98.7 0.00019 4.2E-09 74.2 35.1 391 2-416 320-788 (799)
88 KOG3617 WD40 and TPR repeat-co 98.7 7.7E-05 1.7E-09 77.2 31.5 360 41-439 725-1168(1416)
89 KOG0548 Molecular co-chaperone 98.7 0.00014 3E-09 72.2 32.1 388 13-427 10-471 (539)
90 KOG3785 Uncharacterized conser 98.7 0.00012 2.7E-09 68.7 29.7 414 12-451 64-520 (557)
91 cd05804 StaR_like StaR_like; a 98.7 4.2E-05 9E-10 77.0 29.3 253 192-446 54-337 (355)
92 KOG1070 rRNA processing protei 98.7 1.7E-06 3.8E-11 93.8 19.6 199 248-448 1455-1666(1710)
93 KOG3616 Selective LIM binding 98.6 0.00011 2.3E-09 75.2 30.1 236 180-446 764-1025(1636)
94 PF04733 Coatomer_E: Coatomer 98.6 2.1E-06 4.5E-11 82.4 17.3 245 151-417 15-271 (290)
95 KOG0985 Vesicle coat protein c 98.6 9.2E-05 2E-09 78.3 29.4 378 2-440 949-1336(1666)
96 KOG0985 Vesicle coat protein c 98.6 6.7E-05 1.5E-09 79.3 28.1 285 106-440 951-1244(1666)
97 KOG1156 N-terminal acetyltrans 98.6 0.0007 1.5E-08 68.8 34.3 410 16-446 52-569 (700)
98 PRK04841 transcriptional regul 98.6 0.00019 4.2E-09 81.9 34.9 255 192-446 463-761 (903)
99 PF12854 PPR_1: PPR repeat 98.6 1E-07 2.2E-12 58.4 4.4 33 246-278 2-34 (34)
100 TIGR03302 OM_YfiO outer membra 98.5 6.3E-06 1.4E-10 77.6 18.3 179 249-445 31-232 (235)
101 PF12854 PPR_1: PPR repeat 98.5 1.1E-07 2.4E-12 58.2 4.0 33 37-69 2-34 (34)
102 cd05804 StaR_like StaR_like; a 98.5 0.00028 6.1E-09 71.0 29.1 253 192-445 17-293 (355)
103 PRK04841 transcriptional regul 98.5 0.00091 2E-08 76.5 36.2 253 146-413 460-762 (903)
104 PLN02789 farnesyltranstransfer 98.5 5.5E-05 1.2E-09 73.6 22.3 211 230-443 51-300 (320)
105 KOG2376 Signal recognition par 98.4 0.00071 1.5E-08 68.1 29.3 389 48-445 18-487 (652)
106 PRK10370 formate-dependent nit 98.4 1.7E-05 3.6E-10 71.9 17.0 147 290-447 24-175 (198)
107 PRK15359 type III secretion sy 98.4 4.2E-06 9.1E-11 71.6 12.2 113 309-426 21-136 (144)
108 TIGR03302 OM_YfiO outer membra 98.4 2.3E-05 4.9E-10 73.8 17.4 180 214-413 31-234 (235)
109 KOG1125 TPR repeat-containing 98.4 1.7E-05 3.8E-10 79.1 16.8 239 191-436 295-562 (579)
110 KOG1128 Uncharacterized conser 98.4 1.5E-05 3.3E-10 81.6 16.6 189 246-447 393-584 (777)
111 KOG1070 rRNA processing protei 98.3 6.7E-05 1.4E-09 82.0 21.2 179 141-334 1500-1691(1710)
112 KOG1127 TPR repeat-containing 98.3 0.00015 3.2E-09 77.0 22.9 394 20-441 473-909 (1238)
113 PRK15359 type III secretion sy 98.3 8.5E-06 1.8E-10 69.7 11.8 98 347-446 23-122 (144)
114 KOG1128 Uncharacterized conser 98.3 1.4E-05 3.1E-10 81.8 14.9 218 212-445 394-616 (777)
115 KOG1127 TPR repeat-containing 98.3 0.0008 1.7E-08 71.6 27.8 411 17-443 574-1102(1238)
116 KOG0624 dsRNA-activated protei 98.3 0.0025 5.4E-08 59.9 27.9 301 13-381 46-373 (504)
117 COG5010 TadD Flp pilus assembl 98.3 8.5E-05 1.8E-09 67.3 17.6 117 320-438 106-224 (257)
118 PRK10370 formate-dependent nit 98.3 6E-05 1.3E-09 68.2 16.6 151 258-419 23-181 (198)
119 PRK15179 Vi polysaccharide bio 98.2 8.9E-05 1.9E-09 79.6 19.6 155 280-443 84-243 (694)
120 KOG3617 WD40 and TPR repeat-co 98.2 0.00045 9.7E-09 71.8 23.2 246 136-410 724-995 (1416)
121 KOG4340 Uncharacterized conser 98.2 0.0014 3E-08 60.4 23.2 280 45-376 13-336 (459)
122 COG5010 TadD Flp pilus assembl 98.2 8.9E-05 1.9E-09 67.2 15.5 140 305-446 57-198 (257)
123 KOG2053 Mitochondrial inherita 98.2 0.015 3.2E-07 61.8 36.9 401 16-451 20-508 (932)
124 PLN02789 farnesyltranstransfer 98.2 0.0011 2.3E-08 64.7 24.2 216 192-413 48-304 (320)
125 KOG0548 Molecular co-chaperone 98.2 0.00054 1.2E-08 68.2 21.8 213 220-446 228-456 (539)
126 PRK15363 pathogenicity island 98.2 5.5E-05 1.2E-09 63.8 12.7 93 352-444 37-131 (157)
127 COG4783 Putative Zn-dependent 98.2 0.001 2.2E-08 65.7 23.1 118 324-443 316-435 (484)
128 PRK14720 transcript cleavage f 98.1 0.00031 6.6E-09 76.4 20.4 193 215-427 30-268 (906)
129 TIGR02552 LcrH_SycD type III s 98.1 4E-05 8.7E-10 65.0 11.1 96 351-446 18-115 (135)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.0001 2.2E-09 73.2 15.1 122 317-443 172-295 (395)
131 TIGR00756 PPR pentatricopeptid 98.1 8.1E-06 1.8E-10 50.6 4.6 35 169-216 1-35 (35)
132 COG4783 Putative Zn-dependent 98.0 0.00089 1.9E-08 66.1 20.4 146 281-446 305-455 (484)
133 PRK15179 Vi polysaccharide bio 98.0 0.00087 1.9E-08 72.1 21.2 142 247-390 82-230 (694)
134 KOG1914 mRNA cleavage and poly 98.0 0.028 6.1E-07 56.4 33.4 144 298-444 347-500 (656)
135 KOG1914 mRNA cleavage and poly 97.9 0.028 6.2E-07 56.4 33.6 426 3-442 18-536 (656)
136 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00023 5E-09 70.8 14.6 125 253-380 171-298 (395)
137 PF13812 PPR_3: Pentatricopept 97.9 2.4E-05 5.1E-10 48.1 4.6 34 168-214 1-34 (34)
138 TIGR00756 PPR pentatricopeptid 97.9 2E-05 4.3E-10 48.8 4.3 33 74-106 1-34 (35)
139 KOG2041 WD40 repeat protein [G 97.8 0.056 1.2E-06 55.9 28.8 195 40-284 690-911 (1189)
140 TIGR02552 LcrH_SycD type III s 97.8 0.00043 9.2E-09 58.6 12.5 99 219-318 20-122 (135)
141 cd00189 TPR Tetratricopeptide 97.8 0.00028 6.1E-09 54.8 10.5 93 353-445 3-97 (100)
142 PRK14720 transcript cleavage f 97.8 0.0088 1.9E-07 65.4 24.3 222 40-293 29-268 (906)
143 PF09976 TPR_21: Tetratricopep 97.8 0.00099 2.1E-08 57.2 13.9 123 317-441 15-143 (145)
144 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00068 1.5E-08 55.7 12.3 103 316-418 4-112 (119)
145 PF12895 Apc3: Anaphase-promot 97.7 5E-05 1.1E-09 58.2 5.0 78 363-441 2-83 (84)
146 PF13812 PPR_3: Pentatricopept 97.7 7.4E-05 1.6E-09 45.8 4.2 33 73-105 1-34 (34)
147 KOG2041 WD40 repeat protein [G 97.7 0.036 7.8E-07 57.2 25.0 188 3-210 690-894 (1189)
148 KOG3081 Vesicle coat complex C 97.7 0.0058 1.3E-07 55.7 17.5 17 260-276 117-133 (299)
149 KOG3060 Uncharacterized conser 97.7 0.0034 7.3E-08 56.7 15.8 180 264-446 25-221 (289)
150 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00064 1.4E-08 55.9 10.9 97 351-447 3-107 (119)
151 PF01535 PPR: PPR repeat; Int 97.6 7.7E-05 1.7E-09 44.6 3.5 31 169-212 1-31 (31)
152 KOG3081 Vesicle coat complex C 97.6 0.0074 1.6E-07 55.1 17.1 148 289-444 115-270 (299)
153 KOG3060 Uncharacterized conser 97.6 0.024 5.2E-07 51.5 20.0 164 255-420 56-229 (289)
154 PF13414 TPR_11: TPR repeat; P 97.6 0.00024 5.1E-09 52.0 6.5 64 381-444 2-66 (69)
155 KOG0553 TPR repeat-containing 97.6 0.00065 1.4E-08 63.0 10.4 98 324-424 91-191 (304)
156 PF01535 PPR: PPR repeat; Int 97.5 0.00011 2.4E-09 43.9 3.3 29 74-102 1-29 (31)
157 PLN03088 SGT1, suppressor of 97.5 0.00073 1.6E-08 67.4 10.8 104 320-426 8-114 (356)
158 PF09976 TPR_21: Tetratricopep 97.5 0.0072 1.6E-07 51.8 15.4 22 353-374 121-142 (145)
159 PRK10153 DNA-binding transcrip 97.5 0.0045 9.8E-08 64.6 16.1 64 382-446 420-483 (517)
160 PRK02603 photosystem I assembl 97.4 0.0015 3.3E-08 57.8 11.0 80 352-431 37-121 (172)
161 PF13432 TPR_16: Tetratricopep 97.4 0.00049 1.1E-08 49.6 6.3 58 388-445 3-60 (65)
162 PRK02603 photosystem I assembl 97.4 0.0034 7.4E-08 55.6 12.9 126 282-431 35-166 (172)
163 COG3898 Uncharacterized membra 97.4 0.15 3.3E-06 49.3 28.3 272 151-445 98-392 (531)
164 PLN03088 SGT1, suppressor of 97.4 0.0028 6.2E-08 63.2 13.1 100 288-390 8-111 (356)
165 PF04840 Vps16_C: Vps16, C-ter 97.3 0.17 3.8E-06 49.3 31.7 104 258-375 184-287 (319)
166 PF13432 TPR_16: Tetratricopep 97.3 0.001 2.2E-08 48.0 7.1 61 356-416 3-65 (65)
167 KOG1538 Uncharacterized conser 97.3 0.027 5.8E-07 57.6 19.1 134 175-340 710-843 (1081)
168 CHL00033 ycf3 photosystem I as 97.3 0.0019 4.1E-08 57.0 10.1 93 350-442 35-139 (168)
169 PF08579 RPM2: Mitochondrial r 97.3 0.0038 8.3E-08 49.0 10.3 72 192-263 36-116 (120)
170 COG4235 Cytochrome c biogenesi 97.3 0.0037 7.9E-08 58.4 12.0 103 347-449 153-260 (287)
171 COG3898 Uncharacterized membra 97.3 0.19 4E-06 48.7 23.6 242 192-442 95-355 (531)
172 cd00189 TPR Tetratricopeptide 97.2 0.0034 7.3E-08 48.5 9.9 91 320-413 6-99 (100)
173 PF14559 TPR_19: Tetratricopep 97.2 0.00059 1.3E-08 49.7 5.0 53 393-445 2-54 (68)
174 PF06239 ECSIT: Evolutionarily 97.2 0.0039 8.4E-08 55.4 10.4 103 156-266 33-153 (228)
175 PF14938 SNAP: Soluble NSF att 97.2 0.028 6.2E-07 54.2 17.4 143 289-443 101-264 (282)
176 PF12895 Apc3: Anaphase-promot 97.2 0.0011 2.3E-08 50.8 5.8 79 328-406 3-82 (84)
177 PF04840 Vps16_C: Vps16, C-ter 97.1 0.25 5.4E-06 48.2 23.2 109 316-441 179-287 (319)
178 KOG0553 TPR repeat-containing 97.1 0.0019 4.2E-08 59.9 8.0 88 358-445 89-178 (304)
179 KOG1538 Uncharacterized conser 97.1 0.086 1.9E-06 54.1 20.0 193 176-409 640-844 (1081)
180 COG4700 Uncharacterized protei 97.1 0.042 9.1E-07 47.4 15.2 133 309-444 84-221 (251)
181 PF13371 TPR_9: Tetratricopept 97.1 0.0015 3.3E-08 48.3 6.0 58 389-446 2-59 (73)
182 PF05843 Suf: Suppressor of fo 97.1 0.02 4.4E-07 55.1 15.1 130 284-415 3-140 (280)
183 KOG1130 Predicted G-alpha GTPa 97.1 0.0041 8.9E-08 59.9 9.8 252 191-443 27-342 (639)
184 PF14559 TPR_19: Tetratricopep 97.0 0.00092 2E-08 48.7 4.2 53 363-415 4-58 (68)
185 PF10037 MRP-S27: Mitochondria 97.0 0.016 3.5E-07 58.2 14.0 121 309-429 61-186 (429)
186 KOG2796 Uncharacterized conser 97.0 0.27 5.9E-06 45.0 20.4 229 73-318 69-323 (366)
187 PF05843 Suf: Suppressor of fo 97.0 0.018 3.9E-07 55.4 14.0 125 217-342 2-135 (280)
188 PF14938 SNAP: Soluble NSF att 97.0 0.066 1.4E-06 51.7 18.0 143 257-411 100-266 (282)
189 PRK15363 pathogenicity island 97.0 0.017 3.7E-07 49.0 11.8 91 254-344 38-133 (157)
190 PF10037 MRP-S27: Mitochondria 96.9 0.014 3E-07 58.7 12.7 119 133-264 61-186 (429)
191 PF13414 TPR_11: TPR repeat; P 96.9 0.0017 3.8E-08 47.4 5.0 63 351-413 4-69 (69)
192 PRK10153 DNA-binding transcrip 96.9 0.041 9E-07 57.5 16.7 60 314-376 420-479 (517)
193 PF06239 ECSIT: Evolutionarily 96.9 0.0087 1.9E-07 53.2 9.4 86 279-365 44-153 (228)
194 KOG0550 Molecular chaperone (D 96.8 0.035 7.6E-07 53.9 13.7 153 290-446 177-351 (486)
195 PRK15331 chaperone protein Sic 96.8 0.0076 1.7E-07 51.3 8.4 86 359-444 46-133 (165)
196 PF12688 TPR_5: Tetratrico pep 96.8 0.027 5.7E-07 46.0 11.2 85 358-442 9-101 (120)
197 KOG2796 Uncharacterized conser 96.7 0.21 4.5E-06 45.7 16.8 102 170-278 138-239 (366)
198 PF13431 TPR_17: Tetratricopep 96.7 0.002 4.3E-08 39.3 2.8 33 405-437 2-34 (34)
199 CHL00033 ycf3 photosystem I as 96.6 0.046 9.9E-07 48.2 12.8 81 168-262 35-117 (168)
200 PF12688 TPR_5: Tetratrico pep 96.6 0.064 1.4E-06 43.8 12.3 101 192-293 12-117 (120)
201 PRK10803 tol-pal system protei 96.6 0.017 3.6E-07 54.7 10.2 88 357-444 150-245 (263)
202 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.86 1.9E-05 45.2 29.8 404 26-444 30-530 (660)
203 PF08579 RPM2: Mitochondrial r 96.6 0.022 4.7E-07 44.9 8.9 75 319-394 30-116 (120)
204 PF12921 ATP13: Mitochondrial 96.6 0.025 5.4E-07 46.6 9.7 74 284-357 4-95 (126)
205 PF13281 DUF4071: Domain of un 96.5 0.33 7.2E-06 47.9 18.5 34 381-414 304-337 (374)
206 PRK10866 outer membrane biogen 96.5 0.2 4.3E-06 47.0 16.5 176 251-443 32-239 (243)
207 PF13371 TPR_9: Tetratricopept 96.5 0.013 2.7E-07 43.3 6.9 62 358-419 3-66 (73)
208 KOG2280 Vacuolar assembly/sort 96.5 1.5 3.3E-05 46.4 24.9 117 309-441 679-795 (829)
209 COG4700 Uncharacterized protei 96.5 0.36 7.7E-06 41.9 16.0 124 212-335 85-214 (251)
210 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.014 3E-07 58.1 8.8 63 382-444 75-140 (453)
211 PF13428 TPR_14: Tetratricopep 96.4 0.0078 1.7E-07 39.3 4.7 42 383-424 2-43 (44)
212 KOG1920 IkappaB kinase complex 96.3 0.64 1.4E-05 51.6 20.7 142 183-377 910-1053(1265)
213 PRK10803 tol-pal system protei 96.3 0.089 1.9E-06 49.8 13.0 100 317-416 146-251 (263)
214 PF03704 BTAD: Bacterial trans 96.2 0.025 5.4E-07 48.5 8.1 68 383-450 63-135 (146)
215 PRK10866 outer membrane biogen 96.1 0.29 6.4E-06 45.9 15.6 51 289-339 182-237 (243)
216 KOG0550 Molecular chaperone (D 96.1 0.49 1.1E-05 46.4 16.7 84 326-413 261-352 (486)
217 KOG2053 Mitochondrial inherita 96.1 2.7 5.8E-05 45.6 41.2 185 7-211 43-256 (932)
218 KOG2280 Vacuolar assembly/sort 96.0 2.7 5.8E-05 44.6 28.6 102 259-373 692-793 (829)
219 PF09205 DUF1955: Domain of un 95.8 0.29 6.2E-06 39.9 11.6 85 362-448 68-152 (161)
220 PF13424 TPR_12: Tetratricopep 95.8 0.012 2.6E-07 44.1 3.8 62 382-443 5-73 (78)
221 KOG1130 Predicted G-alpha GTPa 95.7 0.22 4.7E-06 48.6 12.3 125 217-341 196-342 (639)
222 PF13525 YfiO: Outer membrane 95.6 1.1 2.4E-05 40.7 16.6 163 257-436 11-198 (203)
223 PF13424 TPR_12: Tetratricopep 95.6 0.021 4.6E-07 42.7 4.4 29 382-410 46-74 (78)
224 PF12921 ATP13: Mitochondrial 95.5 0.092 2E-06 43.3 8.2 95 313-426 1-98 (126)
225 COG4235 Cytochrome c biogenesi 95.4 0.17 3.7E-06 47.5 10.6 108 3-114 154-267 (287)
226 PF03704 BTAD: Bacterial trans 95.2 0.075 1.6E-06 45.5 7.2 55 254-308 65-122 (146)
227 KOG3941 Intermediate in Toll s 95.2 0.22 4.8E-06 46.0 10.2 105 155-267 52-174 (406)
228 PF13281 DUF4071: Domain of un 95.0 2.6 5.7E-05 41.8 18.0 111 143-266 146-274 (374)
229 COG0457 NrfG FOG: TPR repeat [ 95.0 2.7 5.8E-05 38.2 26.2 212 231-445 38-265 (291)
230 KOG0543 FKBP-type peptidyl-pro 95.0 0.21 4.6E-06 48.8 10.2 64 382-445 257-320 (397)
231 KOG1585 Protein required for f 95.0 2.2 4.7E-05 39.0 15.6 84 356-440 156-251 (308)
232 PF13525 YfiO: Outer membrane 94.9 0.89 1.9E-05 41.4 13.6 141 285-445 8-170 (203)
233 KOG4555 TPR repeat-containing 94.8 0.26 5.6E-06 40.0 8.5 89 359-447 52-146 (175)
234 KOG1920 IkappaB kinase complex 94.7 7.7 0.00017 43.6 21.8 124 265-406 894-1023(1265)
235 KOG0543 FKBP-type peptidyl-pro 94.6 0.7 1.5E-05 45.4 12.5 93 352-444 259-354 (397)
236 KOG1941 Acetylcholine receptor 94.6 1.7 3.6E-05 42.0 14.6 121 320-440 128-270 (518)
237 PRK11906 transcriptional regul 94.6 2.2 4.7E-05 43.1 16.1 154 283-440 252-431 (458)
238 PF04184 ST7: ST7 protein; In 94.4 0.59 1.3E-05 47.1 11.7 154 293-456 179-335 (539)
239 COG1729 Uncharacterized protei 94.3 0.33 7.2E-06 45.1 9.3 57 388-444 184-243 (262)
240 COG3118 Thioredoxin domain-con 94.3 4.9 0.00011 38.0 17.0 136 225-361 143-283 (304)
241 PF04053 Coatomer_WDAD: Coatom 94.3 0.66 1.4E-05 47.6 12.4 106 53-201 329-435 (443)
242 PLN03098 LPA1 LOW PSII ACCUMUL 94.3 0.24 5.2E-06 49.6 8.9 60 352-411 77-141 (453)
243 KOG0890 Protein kinase of the 94.1 16 0.00034 44.6 23.8 275 141-447 1423-1733(2382)
244 smart00299 CLH Clathrin heavy 94.0 3.1 6.8E-05 35.1 14.4 87 8-100 10-96 (140)
245 KOG3941 Intermediate in Toll s 94.0 0.36 7.7E-06 44.7 8.7 96 270-366 53-174 (406)
246 PF07079 DUF1347: Protein of u 93.9 7.7 0.00017 38.9 34.8 72 371-443 445-522 (549)
247 PF13512 TPR_18: Tetratricopep 93.8 2 4.4E-05 36.0 12.1 17 399-415 116-132 (142)
248 COG1729 Uncharacterized protei 93.6 0.99 2.1E-05 42.0 11.0 102 316-418 144-251 (262)
249 PF13512 TPR_18: Tetratricopep 93.6 0.71 1.5E-05 38.6 9.0 56 361-416 21-81 (142)
250 PF04053 Coatomer_WDAD: Coatom 93.4 1.4 2.9E-05 45.3 12.7 130 292-446 271-403 (443)
251 COG4785 NlpI Lipoprotein NlpI, 93.4 5.5 0.00012 35.8 14.5 159 283-447 100-268 (297)
252 KOG4555 TPR repeat-containing 93.1 0.68 1.5E-05 37.6 7.9 88 323-413 52-146 (175)
253 PF00515 TPR_1: Tetratricopept 93.1 0.2 4.4E-06 30.2 4.0 32 383-414 2-33 (34)
254 smart00299 CLH Clathrin heavy 93.1 4.8 0.0001 33.9 16.1 99 73-204 7-105 (140)
255 COG0457 NrfG FOG: TPR repeat [ 92.9 6.9 0.00015 35.4 25.6 218 195-414 37-268 (291)
256 PF07719 TPR_2: Tetratricopept 92.9 0.31 6.6E-06 29.2 4.7 33 383-415 2-34 (34)
257 PF10300 DUF3808: Protein of u 92.9 3 6.5E-05 43.4 14.6 25 220-244 192-216 (468)
258 COG3118 Thioredoxin domain-con 92.8 5.8 0.00013 37.5 14.6 19 320-338 174-192 (304)
259 KOG2066 Vacuolar assembly/sort 92.8 16 0.00035 39.3 25.4 77 12-92 363-442 (846)
260 KOG2610 Uncharacterized conser 92.6 2.8 6E-05 40.1 12.3 150 263-416 115-283 (491)
261 COG3629 DnrI DNA-binding trans 92.5 0.62 1.3E-05 44.0 8.2 63 382-444 153-215 (280)
262 PRK11906 transcriptional regul 92.5 2.4 5.2E-05 42.8 12.5 128 318-445 257-401 (458)
263 PF04184 ST7: ST7 protein; In 92.4 7.3 0.00016 39.7 15.6 97 318-414 263-378 (539)
264 PF13428 TPR_14: Tetratricopep 92.3 0.51 1.1E-05 30.5 5.4 41 6-49 2-42 (44)
265 COG4105 ComL DNA uptake lipopr 92.3 9.5 0.00021 35.4 19.3 58 388-445 173-233 (254)
266 PF04097 Nic96: Nup93/Nic96; 92.3 19 0.0004 39.1 20.1 83 191-278 268-354 (613)
267 KOG1258 mRNA processing protei 92.0 17 0.00038 37.9 29.0 177 249-430 295-489 (577)
268 PF10300 DUF3808: Protein of u 91.9 7 0.00015 40.7 15.8 115 327-444 246-375 (468)
269 PF07079 DUF1347: Protein of u 91.8 16 0.00034 36.9 30.4 45 11-55 134-180 (549)
270 PRK15331 chaperone protein Sic 91.3 1.7 3.7E-05 37.3 8.7 85 192-278 48-132 (165)
271 COG2909 MalT ATP-dependent tra 91.0 28 0.0006 38.3 21.0 191 262-456 426-658 (894)
272 COG3629 DnrI DNA-binding trans 90.7 1.5 3.2E-05 41.5 8.7 73 251-323 153-236 (280)
273 KOG2610 Uncharacterized conser 90.7 2.9 6.3E-05 40.0 10.3 157 294-452 115-283 (491)
274 PF02259 FAT: FAT domain; Int 90.7 18 0.00038 36.0 17.3 66 380-445 144-213 (352)
275 KOG2114 Vacuolar assembly/sort 90.6 29 0.00064 37.8 23.0 75 356-431 711-786 (933)
276 KOG1941 Acetylcholine receptor 90.5 9.4 0.0002 37.1 13.5 218 193-410 18-274 (518)
277 COG4649 Uncharacterized protei 90.3 9.9 0.00021 32.9 12.1 18 192-209 105-122 (221)
278 PF13431 TPR_17: Tetratricopep 90.2 0.37 8.1E-06 29.2 2.9 32 28-62 2-33 (34)
279 PF09613 HrpB1_HrpK: Bacterial 90.0 11 0.00025 32.2 12.6 91 320-413 16-108 (160)
280 PF00637 Clathrin: Region in C 90.0 0.075 1.6E-06 45.3 -0.5 71 133-206 37-108 (143)
281 PF13176 TPR_7: Tetratricopept 89.7 0.55 1.2E-05 28.8 3.4 26 418-443 1-26 (36)
282 COG4105 ComL DNA uptake lipopr 89.6 17 0.00038 33.7 16.1 53 288-340 173-230 (254)
283 PRK09687 putative lyase; Provi 89.4 21 0.00045 34.3 27.0 60 40-99 35-98 (280)
284 PRK12798 chemotaxis protein; R 89.3 25 0.00055 35.2 20.2 180 264-444 125-323 (421)
285 KOG4234 TPR repeat-containing 89.1 2.5 5.4E-05 37.4 8.0 89 359-447 104-199 (271)
286 PF09205 DUF1955: Domain of un 88.3 13 0.00028 30.6 12.4 56 287-342 91-148 (161)
287 PF13181 TPR_8: Tetratricopept 87.8 1.1 2.4E-05 26.8 3.8 30 384-413 3-32 (34)
288 KOG1586 Protein required for f 87.8 19 0.00041 33.0 12.7 23 393-415 165-187 (288)
289 KOG4570 Uncharacterized conser 87.8 2.9 6.3E-05 39.6 8.0 98 132-246 58-165 (418)
290 PF09613 HrpB1_HrpK: Bacterial 87.4 4.2 9.1E-05 34.8 8.2 53 393-445 21-73 (160)
291 PF13176 TPR_7: Tetratricopept 87.3 1.1 2.4E-05 27.4 3.6 27 384-410 1-27 (36)
292 PF13170 DUF4003: Protein of u 87.0 31 0.00067 33.4 16.4 126 125-261 84-227 (297)
293 TIGR02561 HrpB1_HrpK type III 86.3 4.5 9.8E-05 34.0 7.6 53 394-446 22-74 (153)
294 KOG1585 Protein required for f 86.0 28 0.00061 32.1 15.8 52 353-405 193-250 (308)
295 PF04190 DUF410: Protein of un 85.2 35 0.00075 32.4 14.4 151 180-343 2-170 (260)
296 KOG2114 Vacuolar assembly/sort 84.9 65 0.0014 35.3 23.9 193 8-207 286-516 (933)
297 PF13170 DUF4003: Protein of u 84.7 33 0.00073 33.2 14.0 58 299-357 160-224 (297)
298 TIGR02508 type_III_yscG type I 84.6 17 0.00037 28.3 9.2 57 147-219 48-105 (115)
299 PF00515 TPR_1: Tetratricopept 84.4 1.2 2.6E-05 26.6 2.7 24 285-308 4-27 (34)
300 COG3947 Response regulator con 84.3 3.5 7.5E-05 38.7 6.6 60 384-443 281-340 (361)
301 PRK11619 lytic murein transgly 84.1 69 0.0015 34.9 40.3 95 357-451 414-511 (644)
302 PF10602 RPN7: 26S proteasome 83.8 8.3 0.00018 34.1 8.8 57 252-308 37-99 (177)
303 TIGR02561 HrpB1_HrpK type III 83.4 25 0.00054 29.8 10.7 69 12-83 17-86 (153)
304 COG1747 Uncharacterized N-term 82.2 65 0.0014 33.2 21.9 168 250-422 65-245 (711)
305 KOG4648 Uncharacterized conser 82.1 3 6.4E-05 40.0 5.4 111 321-438 104-217 (536)
306 KOG0276 Vesicle coat complex C 81.9 13 0.00028 38.7 10.1 100 148-277 647-747 (794)
307 TIGR02508 type_III_yscG type I 81.8 14 0.0003 28.7 7.9 85 20-111 20-106 (115)
308 KOG4648 Uncharacterized conser 81.3 7.7 0.00017 37.3 7.8 84 289-381 104-197 (536)
309 cd00923 Cyt_c_Oxidase_Va Cytoc 80.8 11 0.00025 29.0 7.1 48 375-422 35-82 (103)
310 PRK09687 putative lyase; Provi 80.6 56 0.0012 31.4 26.0 61 348-413 204-265 (280)
311 KOG4279 Serine/threonine prote 80.6 36 0.00079 36.6 12.9 193 198-415 180-399 (1226)
312 PF02284 COX5A: Cytochrome c o 80.5 12 0.00025 29.3 7.1 49 375-423 38-86 (108)
313 PF07721 TPR_4: Tetratricopept 80.1 2.5 5.4E-05 23.6 2.7 24 417-440 2-25 (26)
314 KOG0276 Vesicle coat complex C 80.0 22 0.00048 37.2 11.0 149 263-442 598-747 (794)
315 PF13374 TPR_10: Tetratricopep 79.8 3.1 6.6E-05 26.1 3.5 28 417-444 3-30 (42)
316 PF00637 Clathrin: Region in C 79.0 1.2 2.6E-05 37.8 1.7 84 222-308 13-96 (143)
317 PF02284 COX5A: Cytochrome c o 78.9 15 0.00032 28.7 7.3 48 309-358 40-87 (108)
318 PF07035 Mic1: Colon cancer-as 78.9 43 0.00094 29.1 14.7 129 201-340 14-146 (167)
319 PF07719 TPR_2: Tetratricopept 78.8 2.5 5.5E-05 25.0 2.7 20 288-307 7-26 (34)
320 KOG1464 COP9 signalosome, subu 78.2 60 0.0013 30.4 12.6 179 264-443 40-259 (440)
321 PF13374 TPR_10: Tetratricopep 77.3 4.7 0.0001 25.2 3.9 28 74-101 3-30 (42)
322 PF07721 TPR_4: Tetratricopept 76.9 4.5 9.7E-05 22.6 3.1 21 46-66 5-25 (26)
323 PF09477 Type_III_YscG: Bacter 76.8 35 0.00076 27.0 9.1 87 229-318 19-107 (116)
324 PF10602 RPN7: 26S proteasome 76.6 53 0.0012 29.0 13.2 54 192-245 47-102 (177)
325 PF13174 TPR_6: Tetratricopept 76.4 5.6 0.00012 23.2 3.8 25 389-413 7-31 (33)
326 cd00923 Cyt_c_Oxidase_Va Cytoc 76.2 19 0.00042 27.8 7.1 63 196-259 22-84 (103)
327 PF14853 Fis1_TPR_C: Fis1 C-te 76.0 6.7 0.00014 26.6 4.3 32 387-418 6-37 (53)
328 PRK11619 lytic murein transgly 75.3 1.3E+02 0.0029 32.8 34.9 56 353-408 315-372 (644)
329 smart00028 TPR Tetratricopepti 75.3 7.1 0.00015 21.8 4.1 29 385-413 4-32 (34)
330 PF02259 FAT: FAT domain; Int 74.9 91 0.002 30.8 21.0 147 279-427 143-303 (352)
331 PF11207 DUF2989: Protein of u 74.8 29 0.00063 31.1 9.1 72 198-270 123-197 (203)
332 PRK10941 hypothetical protein; 74.6 30 0.00064 32.9 9.8 62 384-445 183-244 (269)
333 COG4455 ImpE Protein of avirul 74.4 18 0.00039 32.7 7.6 52 321-375 8-60 (273)
334 COG1747 Uncharacterized N-term 73.8 1.2E+02 0.0025 31.5 20.0 144 192-342 77-233 (711)
335 KOG4570 Uncharacterized conser 73.3 42 0.0009 32.2 10.1 94 246-343 59-164 (418)
336 PF08631 SPO22: Meiosis protei 73.3 89 0.0019 30.0 24.4 18 424-441 254-271 (278)
337 PF06552 TOM20_plant: Plant sp 72.9 19 0.00042 31.5 7.3 64 377-447 63-138 (186)
338 COG4785 NlpI Lipoprotein NlpI, 72.8 9.9 0.00021 34.2 5.7 65 378-442 94-159 (297)
339 PF13181 TPR_8: Tetratricopept 72.7 6.8 0.00015 23.1 3.5 28 417-444 2-29 (34)
340 KOG4234 TPR repeat-containing 72.4 41 0.00089 30.1 9.2 58 358-415 142-201 (271)
341 COG5107 RNA14 Pre-mRNA 3'-end 72.1 1.2E+02 0.0026 30.9 30.9 130 282-415 397-535 (660)
342 PF13174 TPR_6: Tetratricopept 72.0 4.5 9.7E-05 23.6 2.6 28 418-445 2-29 (33)
343 KOG1586 Protein required for f 71.3 85 0.0019 28.9 14.8 54 361-414 165-227 (288)
344 PF04910 Tcf25: Transcriptiona 71.3 82 0.0018 31.6 12.6 64 381-444 99-167 (360)
345 PF11207 DUF2989: Protein of u 71.1 28 0.00062 31.1 8.2 73 362-436 119-198 (203)
346 PF08631 SPO22: Meiosis protei 71.0 1E+02 0.0022 29.6 25.0 60 218-278 86-148 (278)
347 KOG2066 Vacuolar assembly/sort 70.5 1.7E+02 0.0037 32.0 25.1 153 80-283 363-537 (846)
348 PF14853 Fis1_TPR_C: Fis1 C-te 69.5 29 0.00062 23.5 6.2 27 419-445 4-30 (53)
349 COG2976 Uncharacterized protei 69.1 38 0.00083 30.1 8.4 91 12-102 96-188 (207)
350 TIGR03504 FimV_Cterm FimV C-te 69.1 7.3 0.00016 25.2 3.1 27 420-446 3-29 (44)
351 PF08625 Utp13: Utp13 specific 69.0 70 0.0015 27.0 10.5 93 175-268 4-97 (141)
352 COG4455 ImpE Protein of avirul 68.3 19 0.0004 32.6 6.4 64 352-415 3-68 (273)
353 PF13762 MNE1: Mitochondrial s 68.3 73 0.0016 27.0 10.7 78 139-229 40-128 (145)
354 PRK15180 Vi polysaccharide bio 67.6 23 0.00051 35.8 7.6 86 326-413 335-422 (831)
355 KOG3364 Membrane protein invol 67.5 62 0.0013 27.0 8.7 65 381-445 31-100 (149)
356 PF07035 Mic1: Colon cancer-as 66.8 88 0.0019 27.3 15.5 106 37-178 24-130 (167)
357 KOG1498 26S proteasome regulat 66.0 1.5E+02 0.0032 29.6 15.7 100 355-458 136-254 (439)
358 KOG1258 mRNA processing protei 64.6 1.9E+02 0.0042 30.5 27.0 118 315-436 298-420 (577)
359 COG4649 Uncharacterized protei 64.5 99 0.0021 27.1 13.5 115 229-343 71-196 (221)
360 PF14561 TPR_20: Tetratricopep 64.3 21 0.00046 27.4 5.4 46 402-447 8-53 (90)
361 PF10579 Rapsyn_N: Rapsyn N-te 63.4 16 0.00034 27.1 4.2 16 327-342 19-34 (80)
362 PF09986 DUF2225: Uncharacteri 63.3 52 0.0011 30.1 8.7 86 361-446 88-195 (214)
363 PF11768 DUF3312: Protein of u 61.8 1.3E+02 0.0027 31.6 11.8 22 287-308 413-434 (545)
364 PF09477 Type_III_YscG: Bacter 60.2 85 0.0018 24.9 9.0 50 147-211 49-99 (116)
365 KOG1308 Hsp70-interacting prot 59.5 5.6 0.00012 38.3 1.7 85 364-448 128-214 (377)
366 PF10579 Rapsyn_N: Rapsyn N-te 59.2 37 0.0008 25.2 5.5 54 184-238 10-65 (80)
367 PF11846 DUF3366: Domain of un 58.2 34 0.00074 30.6 6.7 33 70-102 141-173 (193)
368 smart00386 HAT HAT (Half-A-TPR 57.5 23 0.00049 20.3 3.7 29 396-424 1-29 (33)
369 KOG4642 Chaperone-dependent E3 54.5 40 0.00086 31.1 6.1 57 386-442 48-104 (284)
370 KOG1464 COP9 signalosome, subu 54.1 2E+02 0.0042 27.2 18.9 245 132-395 20-317 (440)
371 PF08311 Mad3_BUB1_I: Mad3/BUB 52.6 1.1E+02 0.0024 25.1 8.2 42 400-441 81-124 (126)
372 KOG4507 Uncharacterized conser 51.9 51 0.0011 34.5 7.0 96 327-425 620-719 (886)
373 PF07163 Pex26: Pex26 protein; 51.8 2.2E+02 0.0048 27.1 11.4 85 220-306 87-182 (309)
374 PF06552 TOM20_plant: Plant sp 51.6 61 0.0013 28.5 6.6 29 299-327 52-82 (186)
375 PF14863 Alkyl_sulf_dimr: Alky 51.0 83 0.0018 26.5 7.2 63 366-431 57-119 (141)
376 PF04190 DUF410: Protein of un 50.7 2.3E+02 0.0049 26.9 14.2 81 349-445 89-170 (260)
377 PF11846 DUF3366: Domain of un 50.6 48 0.001 29.6 6.3 35 379-413 141-175 (193)
378 COG4976 Predicted methyltransf 49.8 35 0.00076 31.2 4.9 57 359-415 4-62 (287)
379 PF11838 ERAP1_C: ERAP1-like C 49.5 2.6E+02 0.0056 27.2 16.4 85 328-412 144-231 (324)
380 COG3947 Response regulator con 49.5 44 0.00096 31.7 5.7 59 44-102 281-342 (361)
381 KOG1550 Extracellular protein 49.1 3.7E+02 0.0079 28.9 14.6 44 232-278 228-276 (552)
382 PF07163 Pex26: Pex26 protein; 49.1 2E+02 0.0043 27.4 9.8 83 192-276 94-183 (309)
383 PF10345 Cohesin_load: Cohesin 48.0 4E+02 0.0087 29.0 30.0 82 151-243 153-252 (608)
384 PF04910 Tcf25: Transcriptiona 47.9 3E+02 0.0066 27.6 15.0 96 321-424 110-232 (360)
385 KOG0292 Vesicle coat complex C 47.8 26 0.00057 38.3 4.5 51 359-412 652-702 (1202)
386 KOG2422 Uncharacterized conser 47.7 3.1E+02 0.0068 29.0 11.8 54 390-443 350-405 (665)
387 PF13934 ELYS: Nuclear pore co 47.2 2.4E+02 0.0051 26.1 13.1 34 361-394 151-184 (226)
388 KOG4077 Cytochrome c oxidase, 46.9 1.2E+02 0.0025 25.0 6.9 38 375-412 77-114 (149)
389 cd08819 CARD_MDA5_2 Caspase ac 46.8 1.3E+02 0.0028 22.9 7.3 39 263-302 48-86 (88)
390 KOG0376 Serine-threonine phosp 46.8 15 0.00033 37.2 2.6 94 321-417 11-107 (476)
391 PF13929 mRNA_stabil: mRNA sta 46.4 2.8E+02 0.006 26.7 21.7 64 380-447 200-265 (292)
392 KOG0545 Aryl-hydrocarbon recep 45.5 1.6E+02 0.0034 27.5 8.4 57 390-446 238-294 (329)
393 PF11768 DUF3312: Protein of u 44.6 1.7E+02 0.0038 30.7 9.6 57 46-102 412-473 (545)
394 COG2976 Uncharacterized protei 44.4 2.4E+02 0.0051 25.4 13.8 53 290-342 134-187 (207)
395 TIGR03504 FimV_Cterm FimV C-te 43.0 66 0.0014 20.8 4.2 20 192-211 10-29 (44)
396 COG5159 RPN6 26S proteasome re 42.4 2.7E+02 0.0058 26.6 9.5 122 320-442 9-151 (421)
397 PRK13800 putative oxidoreducta 42.3 5.9E+02 0.013 29.3 26.4 145 274-429 720-865 (897)
398 KOG2659 LisH motif-containing 41.6 2.4E+02 0.0051 26.0 8.9 93 283-376 27-129 (228)
399 PF13934 ELYS: Nuclear pore co 41.5 2.9E+02 0.0063 25.5 16.9 52 356-408 114-166 (226)
400 PF11663 Toxin_YhaV: Toxin wit 41.2 27 0.00059 28.9 2.7 33 192-226 106-138 (140)
401 PRK14700 recombination factor 40.8 3.5E+02 0.0075 26.2 10.4 70 169-248 124-198 (300)
402 PHA02875 ankyrin repeat protei 40.8 2.9E+02 0.0063 28.1 11.1 197 192-406 10-223 (413)
403 PF06957 COPI_C: Coatomer (COP 40.3 1.4E+02 0.003 30.4 8.1 54 377-444 293-348 (422)
404 PF08967 DUF1884: Domain of un 39.6 35 0.00076 25.2 2.8 28 474-501 6-33 (85)
405 KOG3807 Predicted membrane pro 39.5 2.5E+02 0.0055 27.3 9.1 15 400-414 380-394 (556)
406 PRK10941 hypothetical protein; 39.5 1.3E+02 0.0028 28.7 7.4 64 355-418 186-251 (269)
407 PF12862 Apc5: Anaphase-promot 38.7 1.3E+02 0.0029 23.0 6.3 18 324-341 51-68 (94)
408 KOG2396 HAT (Half-A-TPR) repea 38.1 4.9E+02 0.011 27.2 34.9 91 352-442 462-556 (568)
409 PF12862 Apc5: Anaphase-promot 37.8 89 0.0019 24.0 5.2 53 392-444 8-69 (94)
410 PF08311 Mad3_BUB1_I: Mad3/BUB 37.3 2.3E+02 0.0051 23.2 8.5 43 234-276 81-124 (126)
411 PF11848 DUF3368: Domain of un 36.7 1.2E+02 0.0027 19.9 5.7 33 192-224 13-45 (48)
412 KOG4077 Cytochrome c oxidase, 36.5 2.3E+02 0.0051 23.3 7.2 56 202-258 70-125 (149)
413 PF07575 Nucleopor_Nup85: Nup8 36.4 1.3E+02 0.0028 32.4 7.9 62 137-209 404-466 (566)
414 KOG0551 Hsp90 co-chaperone CNS 35.7 1.4E+02 0.0031 29.1 6.9 85 358-442 89-179 (390)
415 PF11525 CopK: Copper resistan 35.7 14 0.00031 26.2 0.3 21 565-585 8-28 (73)
416 PF10255 Paf67: RNA polymerase 35.2 1.7E+02 0.0036 29.8 7.7 94 214-307 70-189 (404)
417 PHA02875 ankyrin repeat protei 34.8 4E+02 0.0086 27.1 11.0 207 227-449 10-228 (413)
418 PF14689 SPOB_a: Sensor_kinase 34.6 50 0.0011 23.2 3.0 31 72-102 22-52 (62)
419 KOG3824 Huntingtin interacting 34.3 85 0.0018 30.1 5.2 55 362-416 128-184 (472)
420 PF13929 mRNA_stabil: mRNA sta 33.8 4.4E+02 0.0095 25.3 24.2 116 193-308 140-264 (292)
421 PF09670 Cas_Cas02710: CRISPR- 33.8 4.9E+02 0.011 26.3 11.0 48 294-341 143-196 (379)
422 KOG0292 Vesicle coat complex C 33.6 2.3E+02 0.0049 31.7 8.6 48 52-101 653-700 (1202)
423 PF14689 SPOB_a: Sensor_kinase 33.6 73 0.0016 22.4 3.7 29 415-443 22-50 (62)
424 PF07720 TPR_3: Tetratricopept 32.7 1.2E+02 0.0026 18.5 4.6 28 386-413 5-34 (36)
425 PF04034 DUF367: Domain of unk 32.1 2.9E+02 0.0063 22.8 7.7 53 352-404 68-121 (127)
426 PF10366 Vps39_1: Vacuolar sor 32.0 2.6E+02 0.0057 22.2 7.6 24 353-376 42-65 (108)
427 KOG2582 COP9 signalosome, subu 30.9 5.5E+02 0.012 25.6 11.6 59 148-211 287-346 (422)
428 KOG4642 Chaperone-dependent E3 30.8 3.4E+02 0.0073 25.3 8.1 80 261-340 20-104 (284)
429 PF12968 DUF3856: Domain of Un 30.7 3E+02 0.0065 22.5 8.6 81 361-441 20-125 (144)
430 COG4976 Predicted methyltransf 30.4 91 0.002 28.7 4.5 56 392-447 5-60 (287)
431 PF10366 Vps39_1: Vacuolar sor 30.2 2.8E+02 0.0061 22.1 8.3 33 177-209 35-67 (108)
432 KOG3364 Membrane protein invol 29.9 1.5E+02 0.0032 24.8 5.2 36 382-417 71-106 (149)
433 PRK10564 maltose regulon perip 29.6 1.1E+02 0.0025 29.3 5.2 28 192-219 268-295 (303)
434 KOG4507 Uncharacterized conser 29.5 3E+02 0.0065 29.2 8.4 133 311-446 568-706 (886)
435 COG2909 MalT ATP-dependent tra 29.4 8.7E+02 0.019 27.4 23.0 263 176-441 355-684 (894)
436 KOG2581 26S proteasome regulat 29.3 6.2E+02 0.013 25.7 10.3 121 84-210 137-276 (493)
437 KOG1524 WD40 repeat-containing 29.2 3.2E+02 0.0069 28.5 8.4 89 349-440 572-668 (737)
438 PF11123 DNA_Packaging_2: DNA 28.8 1.2E+02 0.0027 22.0 4.0 33 20-55 12-44 (82)
439 PF13762 MNE1: Mitochondrial s 28.8 3.6E+02 0.0079 22.9 9.0 73 192-264 50-128 (145)
440 PF04090 RNA_pol_I_TF: RNA pol 28.8 4.4E+02 0.0095 23.8 10.4 26 283-308 42-67 (199)
441 PRK15180 Vi polysaccharide bio 28.7 6.8E+02 0.015 26.0 27.5 83 17-102 301-386 (831)
442 KOG1550 Extracellular protein 28.6 7.6E+02 0.016 26.5 22.3 144 153-308 228-390 (552)
443 PRK13800 putative oxidoreducta 28.2 9.7E+02 0.021 27.6 26.9 93 279-376 786-878 (897)
444 PF11817 Foie-gras_1: Foie gra 27.9 1.8E+02 0.0039 27.3 6.4 16 81-96 18-33 (247)
445 KOG2297 Predicted translation 27.8 5.7E+02 0.012 24.8 11.3 70 327-402 268-341 (412)
446 cd08819 CARD_MDA5_2 Caspase ac 27.7 2.8E+02 0.006 21.2 6.7 63 24-93 21-86 (88)
447 KOG3824 Huntingtin interacting 27.7 1.1E+02 0.0024 29.4 4.7 54 325-381 127-182 (472)
448 PF09670 Cas_Cas02710: CRISPR- 27.3 6.6E+02 0.014 25.4 12.3 53 192-245 142-198 (379)
449 PF02847 MA3: MA3 domain; Int 27.0 2.1E+02 0.0046 22.6 6.0 60 192-253 13-74 (113)
450 PF07064 RIC1: RIC1; InterPro 27.0 5.5E+02 0.012 24.3 15.0 153 284-445 84-249 (258)
451 COG5108 RPO41 Mitochondrial DN 26.7 8.6E+02 0.019 26.5 11.7 48 221-268 33-82 (1117)
452 PF00244 14-3-3: 14-3-3 protei 26.5 5.3E+02 0.011 24.0 10.9 54 191-244 11-65 (236)
453 cd08326 CARD_CASP9 Caspase act 26.4 2.5E+02 0.0055 21.2 5.7 62 25-92 19-80 (84)
454 KOG2034 Vacuolar sorting prote 26.1 9.9E+02 0.021 27.0 23.2 66 13-90 366-433 (911)
455 PF11817 Foie-gras_1: Foie gra 25.9 3.9E+02 0.0085 25.0 8.3 56 387-442 183-244 (247)
456 KOG0376 Serine-threonine phosp 25.8 1.7E+02 0.0038 30.0 6.0 104 289-395 11-118 (476)
457 KOG3636 Uncharacterized conser 25.8 5.8E+02 0.013 26.0 9.4 86 207-293 174-271 (669)
458 PRK14962 DNA polymerase III su 25.6 7.9E+02 0.017 25.7 14.2 27 192-218 254-280 (472)
459 KOG4521 Nuclear pore complex, 25.4 1.2E+03 0.025 27.6 14.8 170 82-274 929-1125(1480)
460 KOG1524 WD40 repeat-containing 25.2 3.7E+02 0.008 28.1 8.1 29 72-100 572-600 (737)
461 PF15297 CKAP2_C: Cytoskeleton 25.1 6.8E+02 0.015 24.8 9.8 72 189-262 111-186 (353)
462 PF02607 B12-binding_2: B12 bi 24.8 92 0.002 22.8 3.2 39 192-230 12-50 (79)
463 KOG4814 Uncharacterized conser 24.7 2.8E+02 0.0061 29.8 7.3 60 384-443 396-455 (872)
464 PRK02287 hypothetical protein; 24.0 4.9E+02 0.011 22.8 8.0 23 354-376 111-133 (171)
465 smart00777 Mad3_BUB1_I Mad3/BU 24.0 4.1E+02 0.0089 21.9 8.4 68 367-440 50-123 (125)
466 PRK10564 maltose regulon perip 23.3 2E+02 0.0042 27.8 5.6 43 212-254 252-295 (303)
467 PF09986 DUF2225: Uncharacteri 23.3 4.6E+02 0.01 23.9 8.0 23 390-412 173-195 (214)
468 KOG2659 LisH motif-containing 23.2 6E+02 0.013 23.5 10.0 20 357-376 71-90 (228)
469 PF04124 Dor1: Dor1-like famil 23.1 3.5E+02 0.0075 26.8 7.7 37 77-113 110-148 (338)
470 cd08326 CARD_CASP9 Caspase act 22.7 3.4E+02 0.0074 20.5 6.1 40 262-301 41-80 (84)
471 PF10475 DUF2450: Protein of u 22.7 5.2E+02 0.011 24.9 8.7 54 47-102 103-156 (291)
472 PF14561 TPR_20: Tetratricopep 22.5 3.6E+02 0.0077 20.6 7.9 62 381-442 21-85 (90)
473 PF12926 MOZART2: Mitotic-spin 22.2 3.6E+02 0.0078 20.5 7.7 42 237-278 29-70 (88)
474 COG2912 Uncharacterized conser 21.8 2.9E+02 0.0063 26.2 6.3 60 386-445 185-244 (269)
475 PF14044 NETI: NETI protein 21.5 83 0.0018 21.5 2.0 15 483-497 11-25 (57)
476 KOG4521 Nuclear pore complex, 21.3 1.4E+03 0.03 27.0 15.5 81 218-298 985-1070(1480)
477 COG2178 Predicted RNA-binding 21.2 6.1E+02 0.013 22.8 8.8 47 262-308 40-95 (204)
478 KOG0686 COP9 signalosome, subu 21.2 8.8E+02 0.019 24.7 12.3 153 253-409 152-331 (466)
479 COG0735 Fur Fe2+/Zn2+ uptake r 21.2 4.1E+02 0.009 22.4 6.8 63 202-265 7-69 (145)
480 COG5191 Uncharacterized conser 20.7 1.7E+02 0.0036 28.3 4.5 30 392-421 152-181 (435)
481 smart00638 LPD_N Lipoprotein N 20.3 1.1E+03 0.023 25.4 25.1 41 137-178 309-350 (574)
482 KOG2168 Cullins [Cell cycle co 20.3 1.3E+03 0.027 26.1 18.2 27 418-444 704-735 (835)
483 KOG1308 Hsp70-interacting prot 20.2 1E+02 0.0023 30.1 3.1 115 327-444 127-243 (377)
484 PRK00423 tfb transcription ini 20.1 8.2E+02 0.018 23.9 9.6 12 267-278 143-154 (310)
485 KOG4567 GTPase-activating prot 20.0 8.2E+02 0.018 23.8 9.6 42 237-278 264-305 (370)
486 PF09454 Vps23_core: Vps23 cor 20.0 2.3E+02 0.005 20.2 4.1 50 213-263 5-54 (65)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-117 Score=966.18 Aligned_cols=570 Identities=36% Similarity=0.645 Sum_probs=561.9
Q ss_pred CCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHH
Q 043490 1 FLHSTQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALI 80 (589)
Q Consensus 1 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li 80 (589)
+.||..+|+.++.+|++.++++.|.++|..|.+. |..||..++|.|+.+|+++|++++|+++|++|++||.++||++|
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~--g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li 196 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESS--GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTII 196 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHH
Confidence 4689999999999999999999999999999998 55599999999999999999999999999999999999999999
Q ss_pred HHHHhCCChhHHHHHHHHHHhc-cCCCceeHHHHHHHhc----hhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHH
Q 043490 81 SGYAQHGNAEECFRLFCSLLQY-FFPNEFSLASVLISCD----YLHGKLVHALALKFSLDAHVYVANALINMYSK-SCAD 154 (589)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~~l~a~~----~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~ 154 (589)
.+|++.|++++|+++|++|.+. ..||..||..++.+|. ...++++|..+.+.|+.+|..++|+|+++|++ |+++
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH
Confidence 9999999999999999999998 9999999999999998 88999999999999999999999999999999 9999
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHH
Q 043490 155 EAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERH 234 (589)
Q Consensus 155 ~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 234 (589)
+|.++|++|+++|+++||+||.+| .+.|+.++|+++|++|.+.|+.||..||++++.+|++.|+++.
T Consensus 277 ~A~~vf~~m~~~~~vt~n~li~~y-------------~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~ 343 (697)
T PLN03081 277 DARCVFDGMPEKTTVAWNSMLAGY-------------ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH 343 (697)
T ss_pred HHHHHHHhCCCCChhHHHHHHHHH-------------HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCC
Q 043490 235 ASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNM---NVQ 311 (589)
Q Consensus 235 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~ 311 (589)
|.++|..|.+.|++||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++| |+.
T Consensus 344 a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043490 312 PDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGS 391 (589)
Q Consensus 312 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 391 (589)
||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|.+++++|+..|+..+|++|+.+
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a 503 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTA 503 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCccCCceeeEEECCEEEEEeeCCCC
Q 043490 392 CRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVRKYPGLSWIEIENRVHEFASGGKR 471 (589)
Q Consensus 392 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 471 (589)
|+.+|+.+.|..+++++.+++|++..+|..|+++|++.|+|++|.++++.|+++|+++.|++||+++++.+|.|.+|+.+
T Consensus 504 ~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~ 583 (697)
T PLN03081 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL 583 (697)
T ss_pred HHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHHHhCCcccCCCccccccchhHHhhhhhhhhHHHHHHHHhhhCCCCCCCCCeEEEEecccccCC
Q 043490 472 HPQREAIFKKLEELIGQLKGMGYVPETSLALHDIEEEHKEEQLYHHSEKLALVFAIMNQGSLCRERSVIRIMKNIRICVD 551 (589)
Q Consensus 472 ~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~ 551 (589)
||+.++|+..+.++..+|++.||.||+.+++|++++++|+..+..||||||+||||+++| +|.||||+||||+|+|
T Consensus 584 h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~----~~~~i~i~knlr~c~d 659 (697)
T PLN03081 584 HPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTS----EWTPLQITQSHRICKD 659 (697)
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCC----CCCeEEEecCCEECCC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CchhhHhhhhhhCceEEEecCCccccccCCccCCCCCC
Q 043490 552 CHNFMKLASDLLGKEIVVRDSNRFHHFKDRICSCNDYW 589 (589)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~g~~s~~~~~ 589 (589)
||+|+|+||++.+|+|||||.+|||||+||+|||+|||
T Consensus 660 ch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 660 CHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred chhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8e-112 Score=941.79 Aligned_cols=565 Identities=37% Similarity=0.661 Sum_probs=552.4
Q ss_pred CCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHH
Q 043490 1 FLHSTQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALI 80 (589)
Q Consensus 1 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li 80 (589)
+.||..||+.++.+|++.|+++.|.++|..+.+. |..||..+||+|+.+|+++|++++|.++|++|++||+++||+||
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li 361 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHH
Confidence 4699999999999999999999999999999998 55599999999999999999999999999999999999999999
Q ss_pred HHHHhCCChhHHHHHHHHHHhc-cCCCceeHHHHHHHhc----hhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHH
Q 043490 81 SGYAQHGNAEECFRLFCSLLQY-FFPNEFSLASVLISCD----YLHGKLVHALALKFSLDAHVYVANALINMYSK-SCAD 154 (589)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~~l~a~~----~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~ 154 (589)
.+|++.|++++|+++|++|.+. +.||..||++++.+|+ .+.+.++|+.+.+.|+.++..++|+|+++|++ |+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999998 9999999999999998 89999999999999999999999999999999 9999
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHH
Q 043490 155 EAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERH 234 (589)
Q Consensus 155 ~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 234 (589)
+|.++|++|.++|+++||+||.+| .++|+.++|+++|++|.. +++||..||+++|.+|++.|+++.
T Consensus 442 ~A~~vf~~m~~~d~vs~~~mi~~~-------------~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~ 507 (857)
T PLN03077 442 KALEVFHNIPEKDVISWTSIIAGL-------------RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMC 507 (857)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHH-------------HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHH
Confidence 999999999999999999999999 999999999999999986 599999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCC
Q 043490 235 ASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNM---NVQ 311 (589)
Q Consensus 235 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~ 311 (589)
+.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++| |+.
T Consensus 508 ~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred hHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999 999
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043490 312 PDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGS 391 (589)
Q Consensus 312 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 391 (589)
||..||+.+|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|.+++++|+++||..+|++|+.+
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~a 666 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNA 666 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999878899999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCccCCceeeEEECCEEEEEeeCCCC
Q 043490 392 CRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVRKYPGLSWIEIENRVHEFASGGKR 471 (589)
Q Consensus 392 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 471 (589)
|..+|+.+.++.+.+++.+++|+++..|..|.++|++.|+|++|.++++.|+++|++|+||+||+++++.+|.|.+||.+
T Consensus 667 c~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 667 CRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHHHhCCcccCCCccccccchhHHhhhhhhhhHHHHHHHHhhhCCCCCCCCCeEEEEecccccCC
Q 043490 472 HPQREAIFKKLEELIGQLKGMGYVPETSLALHDIEEEHKEEQLYHHSEKLALVFAIMNQGSLCRERSVIRIMKNIRICVD 551 (589)
Q Consensus 472 ~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~ 551 (589)
||+.++|+..|+++.++|++.||.||+..++++ ++++|+..+..||||||+|||||++| +++||||+||||+|+|
T Consensus 747 h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~-~~~~k~~~~~~hse~la~a~~l~~~~----~~~~i~i~knlr~c~d 821 (857)
T PLN03077 747 HPQIKEINTVLEGFYEKMKASGLAGSESSSMDE-IEVSKDDIFCGHSERLAIAFGLINTV----PGMPIWVTKNLYMCEN 821 (857)
T ss_pred CcchHHHHHHHHHHHHHHHhCCcCCCcchhccc-cHHHHHHHHHhccHHHHHHHhhhcCC----CCCeEEEeCCCEeCcc
Confidence 999999999999999999999999999988844 78899999999999999999999999 9999999999999999
Q ss_pred CchhhHhhhhhhCceEEEecCCccccccCCccCCCC
Q 043490 552 CHNFMKLASDLLGKEIVVRDSNRFHHFKDRICSCND 587 (589)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~g~~s~~~ 587 (589)
||+++|+||++.+|+|||||.+|||||+||+|||+|
T Consensus 822 ch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 822 CHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999997
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-71 Score=618.53 Aligned_cols=547 Identities=23% Similarity=0.381 Sum_probs=478.0
Q ss_pred CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHH
Q 043490 2 LHSTQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALIS 81 (589)
Q Consensus 2 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~ 81 (589)
.|+..+|..++.+|.+.+.++.|.++|..+.+. +..++..++|+|+.+|+++|+++.|+++|++|++||+++||+||+
T Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~ 160 (857)
T PLN03077 83 PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSS--HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVG 160 (857)
T ss_pred CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHc--CCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHH
Confidence 578888999999999999999999999988887 334889999999999999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHHHHhc-cCCCceeHHHHHHHhc----hhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHH
Q 043490 82 GYAQHGNAEECFRLFCSLLQY-FFPNEFSLASVLISCD----YLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADE 155 (589)
Q Consensus 82 ~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~~l~a~~----~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~ 155 (589)
+|++.|++++|+++|++|... +.||.+||++++.+|+ +..++++|+.+.+.|+.||..++|+|+++|++ |++++
T Consensus 161 ~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 240 (857)
T PLN03077 161 GYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHH
Confidence 999999999999999999998 9999999999999998 78899999999999999999999999999999 99999
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHH
Q 043490 156 AWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHA 235 (589)
Q Consensus 156 A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 235 (589)
|.++|++|++||+++||+||.+| .+.|++++|+++|.+|...|+.||..||++++.+|++.|+++.|
T Consensus 241 A~~lf~~m~~~d~~s~n~li~~~-------------~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 241 ARLVFDRMPRRDCISWNAMISGY-------------FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HHHHHhcCCCCCcchhHHHHHHH-------------HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCC
Q 043490 236 SAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNM---NVQP 312 (589)
Q Consensus 236 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p 312 (589)
.++|..+.+.|+.||..+||+|+.+|+++|++++|.++|++|.+||+++||+||.+|++.|++++|+++|++| |+.|
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043490 313 DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSC 392 (589)
Q Consensus 313 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 392 (589)
|..||+.++.+|++.|++++|.++++.+.+ .|+.|+..+|++||++|+++|++++|.++|++|. +||..+|++++.+|
T Consensus 388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~ 465 (857)
T PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAER-KGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGL 465 (857)
T ss_pred CceeHHHHHHHHhccchHHHHHHHHHHHHH-hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHH
Confidence 999999999999999999999999999965 5999999999999999999999999999999997 68999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCccCCc--------------------
Q 043490 393 RKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVRKYPG-------------------- 452 (589)
Q Consensus 393 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------------- 452 (589)
.++|+.++|..+|++|.+.-++|..+|..++.+|++.|..+.+.+++..|.+.|+.++..
T Consensus 466 ~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~ 545 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWN 545 (857)
T ss_pred HHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHH
Confidence 999999999999999986555577777777766666666666666665555555543321
Q ss_pred ---------eeeEEECCEEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCcccCCCccccccchhHHhhhh---hhhhHH
Q 043490 453 ---------LSWIEIENRVHEFASGGKRHPQREAIFKKLEELIGQLKGMGYVPETSLALHDIEEEHKEEQL---YHHSEK 520 (589)
Q Consensus 453 ---------~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~~~~~ 520 (589)
.+|+. .+.++..|++.+++ .+++++|++.|+.||..++...+..+.+.+.+ ....+.
T Consensus 546 ~f~~~~~d~~s~n~-------lI~~~~~~G~~~~A----~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 546 QFNSHEKDVVSWNI-------LLTGYVAHGKGSMA----VELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred HHHhcCCChhhHHH-------HHHHHHHcCCHHHH----HHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 24433 35667778887776 47899999999999987776555555544433 223344
Q ss_pred HHHHHHhhhCCCCCCCCCeEEEEecccccCCCchhhHhhhhhhCc------eEEEecCCccccccCC
Q 043490 521 LALVFAIMNQGSLCRERSVIRIMKNIRICVDCHNFMKLASDLLGK------EIVVRDSNRFHHFKDR 581 (589)
Q Consensus 521 l~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~------~~~~~~~~~~h~~~~g 581 (589)
+...+|+.+.. .+ .-++++.+.++|+.++|.++|.+|+.+ ..++..|+.+.+.+.|
T Consensus 615 M~~~~gi~P~~----~~-y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 615 MEEKYSITPNL----KH-YACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred HHHHhCCCCch----HH-HHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Confidence 44456655443 22 337899999999999999999999743 2344455554444443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-60 Score=521.80 Aligned_cols=432 Identities=18% Similarity=0.228 Sum_probs=403.5
Q ss_pred CChhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC----CCCcchHHH
Q 043490 3 HSTQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMP----KRNVVSWTA 78 (589)
Q Consensus 3 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~ 78 (589)
||..+|+.+|.+|++.|+++.|.++|+.|.+. |..||..+|+.||.+|+++|++++|.++|++|. .||.++||+
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~--Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyna 512 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEA--GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 89999999999999999999999999999998 555999999999999999999999999999998 589999999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhc-cCCCceeHHHHHHHhc----hhhHHHHHHHHHH--hcCCCchhHHHHHHHHHhc-
Q 043490 79 LISGYAQHGNAEECFRLFCSLLQY-FFPNEFSLASVLISCD----YLHGKLVHALALK--FSLDAHVYVANALINMYSK- 150 (589)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~~l~a~~----~~~~~~~~~~~~~--~g~~~~~~~~~~li~~y~~- 150 (589)
||.+|++.|++++|+++|++|.+. +.||..||+.++.+|. .+.+..++..|.+ .|+.||..+|+++|.+|++
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 999999999999999999999998 9999999999999998 8899999999976 6899999999999999999
Q ss_pred CCHHHHHHHHhhCCC----CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043490 151 SCADEAWKVFENMEF----RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKAC 226 (589)
Q Consensus 151 g~~~~A~~lf~~m~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 226 (589)
|++++|.++|+.|.+ |+..+||++|.+| ++.|++++|+++|++|.+.|+.||..||++++.+|
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay-------------~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~ 659 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC-------------SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH-------------HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999974 6779999999999 99999999999999999999999999999999999
Q ss_pred hCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCCHHHHH
Q 043490 227 AGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT----YHDLVSWNSILKAYALHGQAKEAL 302 (589)
Q Consensus 227 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~ 302 (589)
++.|++++|.++|+.|.+.|++||..+|++||.+|+++|++++|.++|+.|. .||+.+||+||.+|++.|+.++|+
T Consensus 660 ~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAl 739 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999995 799999999999999999999999
Q ss_pred HHHHhC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHh----hcC-----------
Q 043490 303 QLFSNM---NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLG----RVG----------- 364 (589)
Q Consensus 303 ~~~~~m---~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g----------- 364 (589)
++|++| |+.||..||+.++.+|++.|++++|.++|..|.+ .|+.||..+|++|+.++. +++
T Consensus 740 elf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~ 818 (1060)
T PLN03218 740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDS 818 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Confidence 999999 9999999999999999999999999999999965 599999999999997743 222
Q ss_pred --------CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CCCChhHHHHHHHHhhhcCCh
Q 043490 365 --------RILEAEKLIREM---PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQL-EPGDSLGFVQMSNIYCLSGSF 432 (589)
Q Consensus 365 --------~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~ 432 (589)
..++|..+|++| ++.||..||+.++.++.+.+..+.+..+++.+... .+++..+|+.|++++.+. .
T Consensus 819 g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~ 896 (1060)
T PLN03218 819 GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--D 896 (1060)
T ss_pred cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--h
Confidence 246799999999 89999999999998888888999998888887643 356889999999998432 3
Q ss_pred HHHHHHHHHHhcCCCccCCc
Q 043490 433 NKARLIRKEMKGSRVRKYPG 452 (589)
Q Consensus 433 ~~a~~~~~~m~~~~~~~~~~ 452 (589)
++|..++++|.+.|+.|+..
T Consensus 897 ~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 897 PRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCcc
Confidence 68999999999999988764
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.5e-60 Score=518.36 Aligned_cols=517 Identities=14% Similarity=0.214 Sum_probs=329.4
Q ss_pred CChhHHHHHHHHHHccCCHHHHHHHHHHHHHh--CCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHH
Q 043490 3 HSTQIYATLFHACALHGNIKQAMQLHEHMINN--FPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALI 80 (589)
Q Consensus 3 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li 80 (589)
++...|..++..+++.|++++|+++|+.|.+. .+ ++...++.++..|.+.|.+++|.++|+.|+.||..+||.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~---~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLD---MDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45677888999999999999999999999987 34 78888899999999999999999999999999999999999
Q ss_pred HHHHhCCChhHHHHHHHHHHhc-cCCCceeHHHHHHHhc----hhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHH
Q 043490 81 SGYAQHGNAEECFRLFCSLLQY-FFPNEFSLASVLISCD----YLHGKLVHALALKFSLDAHVYVANALINMYSK-SCAD 154 (589)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~~l~a~~----~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~ 154 (589)
.+|++.|++++|.++|++|.+. ..||..+|++++.+|+ .+.+..++..|.+.|+.||..+|+++|.+|++ |+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 9999999999999999999887 6666666666666655 55566666666666666666666666666666 6666
Q ss_pred HHHHHHhhCC----CCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhC
Q 043490 155 EAWKVFENME----FRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQR--EGMAPDWCTFSIVLKACAG 228 (589)
Q Consensus 155 ~A~~lf~~m~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~ 228 (589)
+|.++|++|. .||.++||+||.+| ++.|++++|.++|.+|.. .|+.||..||++++.+|++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~-------------~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISAC-------------GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-------------HHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 6666666664 35666666666666 666666666666666654 4556666666666666666
Q ss_pred cCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCCHHHHHHH
Q 043490 229 LVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT----YHDLVSWNSILKAYALHGQAKEALQL 304 (589)
Q Consensus 229 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~ 304 (589)
.|++++|.++|+.|.+.|++|+..+|+++|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66666666666666666666666666666666666666666666666665 35566666666666666666666666
Q ss_pred HHhC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC---CC
Q 043490 305 FSNM---NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM---PM 378 (589)
Q Consensus 305 ~~~m---~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~ 378 (589)
|++| |+.||..+|+.+|.+|++.|++++|.++|+.|.+ .|+.||..+|++||.+|++.|++++|.++|++| ++
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~-~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 6666 5666666666666666666666666666666633 356666666666666666666666666666655 55
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-CCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCc-cCCceeeE
Q 043490 379 EPDSVIWSVLLGSCRKHGETRLAELAATKLKQLE-PGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVR-KYPGLSWI 456 (589)
Q Consensus 379 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~s~~ 456 (589)
.||..+|++++.+|.+.|+++.|.+++++|.+.+ .+|..+|..|+.+|. ++++++.++.+.+...+.. +.....|
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~g~~~~~n~w- 827 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDSGRPQIENKW- 827 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhccccccccch-
Confidence 5666666666666666666666666666665544 235555666555433 1333333333322211000 0000011
Q ss_pred EECCEEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCcccCCCccccccchhHHhhhhhhhhHHHHHHHHhhhCCCCCCC
Q 043490 457 EIENRVHEFASGGKRHPQREAIFKKLEELIGQLKGMGYVPETSLALHDIEEEHKEEQLYHHSEKLALVFAIMNQGSLCRE 536 (589)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~ 536 (589)
.. ....++++|.+.|+.||..++...+....+.+. ......+-..+++.+.+ +
T Consensus 828 ------------------~~----~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~-~~~~~~m~~~m~~~~~~----~ 880 (1060)
T PLN03218 828 ------------------TS----WALMVYRETISAGTLPTMEVLSQVLGCLQLPHD-ATLRNRLIENLGISADS----Q 880 (1060)
T ss_pred ------------------HH----HHHHHHHHHHHCCCCCCHHHHHHHHHHhccccc-HHHHHHHHHHhccCCCC----c
Confidence 11 234789999999999996555333211111111 11223333334443332 3
Q ss_pred CCe--EEEEecccccCCCchhhHhhhhhhCceEE
Q 043490 537 RSV--IRIMKNIRICVDCHNFMKLASDLLGKEIV 568 (589)
Q Consensus 537 ~~~--~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 568 (589)
+.. ..+++.++ ..-++|..++..|..+.|+
T Consensus 881 ~~~~y~~Li~g~~--~~~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 881 KQSNLSTLVDGFG--EYDPRAFSLLEEAASLGVV 912 (1060)
T ss_pred chhhhHHHHHhhc--cChHHHHHHHHHHHHcCCC
Confidence 322 23455442 1235799999999887654
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-58 Score=504.13 Aligned_cols=476 Identities=22% Similarity=0.322 Sum_probs=411.9
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHhc--cCCCceeHHHHHHHhc----hhhHHHHHHHHHHhcCCCchhHHHHH
Q 043490 71 RNVVSWTALISGYAQHGNAEECFRLFCSLLQY--FFPNEFSLASVLISCD----YLHGKLVHALALKFSLDAHVYVANAL 144 (589)
Q Consensus 71 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p~~~t~~~~l~a~~----~~~~~~~~~~~~~~g~~~~~~~~~~l 144 (589)
++.++|+.+|.+|++.|++++|+++|+.|... ..||..||+.++.+|. .+.++++|..+.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 57789999999999999999999999999876 6899999999999998 77899999999999999999999999
Q ss_pred HHHHhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043490 145 INMYSK-SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVL 223 (589)
Q Consensus 145 i~~y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 223 (589)
+++|++ |++++|.++|++|++||.++||++|.+| .+.|++++|+++|++|.+.|+.||..||+.++
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~-------------~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll 231 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGL-------------VDAGNYREAFALFREMWEDGSDAEPRTFVVML 231 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHH-------------HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHH
Confidence 999999 9999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHH
Q 043490 224 KACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQ 303 (589)
Q Consensus 224 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 303 (589)
.+|++.|+.+.+.++|..+.+.|+.||..++|+|+++|+++|++++|.++|+.|.++|+++||+||.+|++.|+.++|++
T Consensus 232 ~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 043490 304 LFSNM---NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPMEP 380 (589)
Q Consensus 304 ~~~~m---~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 380 (589)
+|++| |+.||..||+.++.+|++.|++++|.+++..|.+. |+.||..+|++||++|+++|++++|.++|++|. +|
T Consensus 312 lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~ 389 (697)
T PLN03081 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RK 389 (697)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CC
Confidence 99999 99999999999999999999999999999999665 999999999999999999999999999999997 68
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-CCChhHHHHHHHHhhhcCChHHHHHHHHHHhc-CCCccCCceeeEEE
Q 043490 381 DSVIWSVLLGSCRKHGETRLAELAATKLKQLE-PGDSLGFVQMSNIYCLSGSFNKARLIRKEMKG-SRVRKYPGLSWIEI 458 (589)
Q Consensus 381 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~s~~~~ 458 (589)
|..+|++||.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+|++.|+.++|.++|+.|.+ .|+.|+......
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~-- 467 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC-- 467 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh--
Confidence 99999999999999999999999999999865 35899999999999999999999999999985 688776532111
Q ss_pred CCEEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCcccCCCccccccchhHHhhhhh---hhhHHHHHHHHhhhCCCCCC
Q 043490 459 ENRVHEFASGGKRHPQREAIFKKLEELIGQLKGMGYVPETSLALHDIEEEHKEEQLY---HHSEKLALVFAIMNQGSLCR 535 (589)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~l~~~~~~~~ 535 (589)
++.+....++.++++ +.+++.++.||...+..-+..+.+.+.+. ...+++ +++-+..
T Consensus 468 ------li~~l~r~G~~~eA~-------~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l---~~~~p~~---- 527 (697)
T PLN03081 468 ------MIELLGREGLLDEAY-------AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL---YGMGPEK---- 527 (697)
T ss_pred ------HHHHHHhcCCHHHHH-------HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH---hCCCCCC----
Confidence 233344555555553 34556789999755433333332222111 111111 2322221
Q ss_pred CCCeEEEEecccccCCCchhhHhhhhhhCceEEE-------ecCCccccccCCcc
Q 043490 536 ERSVIRIMKNIRICVDCHNFMKLASDLLGKEIVV-------RDSNRFHHFKDRIC 583 (589)
Q Consensus 536 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~~g~~ 583 (589)
.+..+.+++.+..+|+..+|.+++..|..+.+-. .-.+..|.|-.|-.
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 3445566778999999999999999999886521 22345677765543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.5e-25 Score=254.47 Aligned_cols=429 Identities=14% Similarity=0.070 Sum_probs=300.7
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHH
Q 043490 6 QIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK---RNVVSWTALISG 82 (589)
Q Consensus 6 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~ 82 (589)
.....++..+.+.|++++|..+++.+.+..| .++.++..+...|...|++++|.+.|+++.+ .+...+..+...
T Consensus 432 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 508 (899)
T TIGR02917 432 RADLLLILSYLRSGQFDKALAAAKKLEKKQP---DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARI 508 (899)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 3455667788888999999998888887655 7778888888889999999999998887653 345677778888
Q ss_pred HHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhc----hhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHH
Q 043490 83 YAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCD----YLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAW 157 (589)
Q Consensus 83 ~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~----~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~ 157 (589)
+...|++++|.+.|+++....+.+..++..+...+. .+.+...+..+.+.+ +.+...+..+...|.+ |++++|.
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHH
Confidence 888899999999988887753333334444433332 556666666665543 3455667778888888 8888888
Q ss_pred HHHhhCCC---CChhHHHHHHHHHHcCCcHHHHHHHH---------------------HHcCCHHHHHHHHHHHHHcCCC
Q 043490 158 KVFENMEF---RNVISWNSMIAAFRACKLEAQAIELF---------------------AKMKNEEEALFLFRQLQREGMA 213 (589)
Q Consensus 158 ~lf~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~---------------------~~~g~~~~A~~~~~~m~~~g~~ 213 (589)
.+++.+.. .+...|..+...|...|++++|++.| .+.|++++|...|+++.+.. +
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 666 (899)
T TIGR02917 588 AILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-P 666 (899)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 88888753 45677888888886666666665543 45567777777777776542 3
Q ss_pred CCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHH
Q 043490 214 PDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT--YHDLVSWNSILKA 291 (589)
Q Consensus 214 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~ 291 (589)
.+..++..+...+...|+++.|.++++.+.+.. +.+...+..+...|.+.|++++|.+.|+.+. .|+..++..++..
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 745 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRA 745 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHH
Confidence 345666677777777777777777777776665 5566666677777777777777777777665 3444566667777
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHH
Q 043490 292 YALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEA 369 (589)
Q Consensus 292 ~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 369 (589)
+.+.|+.++|.+.++++ ...| +...+..+...|...|+.++|.++|+.+.+.. +++...++.+...+.+.|+ .+|
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A 822 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRA 822 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHH
Confidence 77777777777777777 3333 45566666677777777777777777775431 3355567777777777777 667
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 370 EKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 370 ~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
+..++++ ...|+ ..++..+...+...|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 823 LEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777766 33443 55666677777777777777777777777777777777777777777777777777777764
No 8
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.96 E-value=5.7e-30 Score=206.29 Aligned_cols=106 Identities=58% Similarity=1.066 Sum_probs=96.1
Q ss_pred ceeeEEECCEEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCcccCCCccccccchhHH--------hhhhhhhhHHHHH
Q 043490 452 GLSWIEIENRVHEFASGGKRHPQREAIFKKLEELIGQLKGMGYVPETSLALHDIEEEHK--------EEQLYHHSEKLAL 523 (589)
Q Consensus 452 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~~~l~~ 523 (589)
++||+++ |.|++|+.+||+. ++..++...||.|++..+.|++.++++ +..+..||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899876 9999999999997 456788889999999999998877655 5688999999999
Q ss_pred HHHhhhCCCCCCCCCeEEEEecc-cccCCCchhhHhhhhhhCceEEEecCCcccccc
Q 043490 524 VFAIMNQGSLCRERSVIRIMKNI-RICVDCHNFMKLASDLLGKEIVVRDSNRFHHFK 579 (589)
Q Consensus 524 ~~~l~~~~~~~~~~~~~~~~~~~-~~c~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 579 (589)
||||+++ +|+||+ |+|+|||+++|+||++.+|+|||||++|||||+
T Consensus 70 afgli~~----------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT----------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce----------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999874 789999 999999999999999999999999999999996
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.2e-24 Score=246.91 Aligned_cols=435 Identities=14% Similarity=0.057 Sum_probs=244.6
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-CcchHHHHH
Q 043490 4 STQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--R-NVVSWTALI 80 (589)
Q Consensus 4 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li 80 (589)
+...+..+...+.+.|++++|.++++.+.+..| .+...+..+...+...|++++|.+.|+++.+ | +...+..++
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 438 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELDP---ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLI 438 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHH
Confidence 456677777788888888888888888776544 5666677777777777777777777776543 1 233445555
Q ss_pred HHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhc----hhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHH
Q 043490 81 SGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCD----YLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADE 155 (589)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~----~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~ 155 (589)
..+.+.|++++|+.+++.+.....++..++..+...+. .+.+...+..+++.. +.+...+..+...+.. |++++
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 66666666666666666665542233333333333322 444555555444332 2233344445555555 55665
Q ss_pred HHHHHhhCCC---CChhHHHHHHHHHHcCCcHHHHHHHH---------------------HHcCCHHHHHHHHHHHHHcC
Q 043490 156 AWKVFENMEF---RNVISWNSMIAAFRACKLEAQAIELF---------------------AKMKNEEEALFLFRQLQREG 211 (589)
Q Consensus 156 A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~---------------------~~~g~~~~A~~~~~~m~~~g 211 (589)
|.+.|+++.+ .+..++..+...+.+.|+.++|...+ .+.|++++|+.+++++....
T Consensus 518 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 6555555432 23445555555555555555554442 33455555555555555432
Q ss_pred CCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CC--------
Q 043490 212 MAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YH-------- 280 (589)
Q Consensus 212 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~-------- 280 (589)
+.+..+|..+..++...|+++.|...+..+.+.. +.+...+..+...|.+.|++++|..+|+++. +.
T Consensus 598 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 675 (899)
T TIGR02917 598 -PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3344555555555555555555555555555443 3344445555555555555555555555443 12
Q ss_pred --------------------------ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHH
Q 043490 281 --------------------------DLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDSATFVSLLSACSHAGLVQEG 333 (589)
Q Consensus 281 --------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~~g~~~~a 333 (589)
+...+..+...+...|++++|++.|+++ ...|+..++..+..++.+.|++++|
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHH
Confidence 3334444445555555555555555555 4444445555555555555555555
Q ss_pred HHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 043490 334 NKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQL 411 (589)
Q Consensus 334 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 411 (589)
.+.++.+.+. .+.+...+..+...|.+.|++++|.+.|+++ ...| +..+++.+...+...|+ ++|+..++++.+.
T Consensus 756 ~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 756 VKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 5555555432 1234445555666666666666666666665 2223 35566666666666666 5566666666666
Q ss_pred CCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCC
Q 043490 412 EPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRV 447 (589)
Q Consensus 412 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 447 (589)
.|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 666666666666666777777777777776665543
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=2.4e-19 Score=175.24 Aligned_cols=397 Identities=15% Similarity=0.138 Sum_probs=306.4
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChh
Q 043490 14 ACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--R-NVVSWTALISGYAQHGNAE 90 (589)
Q Consensus 14 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~ 90 (589)
.+.+..+++...+--....+..+ .-..+|..+.+.+-..|++++|+..++.+.+ | .+..|..+..++...|+.+
T Consensus 91 i~~q~~r~d~s~a~~~~a~r~~~---q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~ 167 (966)
T KOG4626|consen 91 IFFQGSRLDKSSAGSLLAIRKNP---QGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLE 167 (966)
T ss_pred hhhcccchhhhhhhhhhhhhccc---hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCc
Confidence 34445555555544444444444 5667888888888888999999988887764 3 5668888888899999999
Q ss_pred HHHHHHHHHHhccCCCcee----HHHHHHHhc-hhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCC
Q 043490 91 ECFRLFCSLLQYFFPNEFS----LASVLISCD-YLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFENME 164 (589)
Q Consensus 91 ~A~~~~~~m~~~~~p~~~t----~~~~l~a~~-~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~ 164 (589)
.|...|.+.++. .|+.+. ...++++.. +.+++..+-.++... +.-..+|+.|-..+-. |++..|..-|++..
T Consensus 168 ~a~~~~~~alql-nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAv 245 (966)
T KOG4626|consen 168 LAVQCFFEALQL-NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV 245 (966)
T ss_pred ccHHHHHHHHhc-CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence 998888877764 443332 334444444 555555444444332 1224567777777777 99999999998876
Q ss_pred C--CC-hhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhCcCcHHHHHHHHH
Q 043490 165 F--RN-VISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPD-WCTFSIVLKACAGLVTERHASAVHS 240 (589)
Q Consensus 165 ~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~ 240 (589)
. |+ ...|-.|...| ...+.+++|+..|.+.... .|+ ...+..+...|-..|.++.|..-++
T Consensus 246 kldP~f~dAYiNLGnV~-------------ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Yk 310 (966)
T KOG4626|consen 246 KLDPNFLDAYINLGNVY-------------KEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYK 310 (966)
T ss_pred cCCCcchHHHhhHHHHH-------------HHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHH
Confidence 4 43 35677777777 8888888888888877663 454 4677777777889999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-H
Q 043490 241 LIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDS-A 315 (589)
Q Consensus 241 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~ 315 (589)
+.++.. +.-...|+.|..++-..|++.+|.+.|.+.. .....+.+.|...|...|.+++|..+|... .+.|.- .
T Consensus 311 ral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aa 389 (966)
T KOG4626|consen 311 RALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAA 389 (966)
T ss_pred HHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhh
Confidence 988764 4457789999999999999999999999877 234568888999999999999999999998 888864 5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 043490 316 TFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQ-LDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSC 392 (589)
Q Consensus 316 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~ 392 (589)
.++.|...|-+.|++++|...+++.+ .++|+ ...|+.+...|-..|+.+.|.+.+.+. .+.|. ....+.|...|
T Consensus 390 a~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 390 AHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIY 466 (966)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh
Confidence 78889999999999999999998876 66785 457888899999999999999998887 77887 77889999999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHH
Q 043490 393 RKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNK 434 (589)
Q Consensus 393 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 434 (589)
...|+..+|+..++..++++|+.+.+|..++.+..--.+|.+
T Consensus 467 kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 467 KDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 999999999999999999999999999888877655555544
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=2.4e-17 Score=189.04 Aligned_cols=430 Identities=12% Similarity=0.025 Sum_probs=243.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHH-HHHHHhcCChHHHHHHHhcCCC--C-CcchHHHHHHHHH
Q 043490 9 ATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHL-INMYAKFGYLDDARHLFDEMPK--R-NVVSWTALISGYA 84 (589)
Q Consensus 9 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~ 84 (589)
..+...+...|++++|.+.++.+.+..| ++....... .......|+.++|++.|+++.+ | +...+..+...+.
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~p---~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGAP---PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLF 192 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCCC---CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445567889999999999999987644 554321111 2222345999999999999875 4 4567888899999
Q ss_pred hCCChhHHHHHHHHHHhccCCCce----eHHH-------------HHHHhc--------hhhHHHHHHHHHHhcCCCchh
Q 043490 85 QHGNAEECFRLFCSLLQYFFPNEF----SLAS-------------VLISCD--------YLHGKLVHALALKFSLDAHVY 139 (589)
Q Consensus 85 ~~g~~~~A~~~~~~m~~~~~p~~~----t~~~-------------~l~a~~--------~~~~~~~~~~~~~~g~~~~~~ 139 (589)
..|+.++|+..|+++... .+... .+.. .+..+. ...+...+....+....|+..
T Consensus 193 ~~g~~~eAl~~l~~~~~~-~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKS-PAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred ccCCHHHHHHHHHHHhhC-CCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH
Confidence 999999999999998653 11000 0000 000000 001111111111111122211
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHcCCcHHHHHHHH------------------------
Q 043490 140 VANALINMYSK-SCADEAWKVFENMEF--R-NVISWNSMIAAFRACKLEAQAIELF------------------------ 191 (589)
Q Consensus 140 ~~~~li~~y~~-g~~~~A~~lf~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~------------------------ 191 (589)
.......+.. |++++|...|++..+ | +...+..+...|.+.|++++|++.|
T Consensus 272 -~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 272 -ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 1122334445 777777777766542 2 4556666666666666655555443
Q ss_pred -----------HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH-
Q 043490 192 -----------AKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIH- 259 (589)
Q Consensus 192 -----------~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~- 259 (589)
.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.+++.. +.+...+..+..
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l 428 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 24566777777777777643 2344556666677777778888888777777653 333333333333
Q ss_pred -----------------------------------------HHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHc
Q 043490 260 -----------------------------------------AYARCGSISLSKQVFDKMT--YH-DLVSWNSILKAYALH 295 (589)
Q Consensus 260 -----------------------------------------~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~ 295 (589)
.+...|++++|.+.|++.. .| +...+..+...|.+.
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3334556666666665554 12 334555556666666
Q ss_pred CCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHh------------------------------
Q 043490 296 GQAKEALQLFSNM-NVQPDS-ATFVSLLSACSHAGLVQEGNKVFHSMLEN------------------------------ 343 (589)
Q Consensus 296 g~~~~A~~~~~~m-~~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~------------------------------ 343 (589)
|++++|...|+++ ...|+. ..+..+...+...++.++|...++.+...
T Consensus 509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 6666666666666 444432 22222212222233333333333221000
Q ss_pred -------c-CCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 043490 344 -------H-GVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEP 413 (589)
Q Consensus 344 -------~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 413 (589)
. ..+++...+..+...|.+.|++++|++.|++. ...|+ ...+..+...+...|+.++|+..++++.+..|
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 0 01123334455666666667777777777666 33443 66666777777777777777777777777777
Q ss_pred CChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 414 GDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 414 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
+++..+..+..++...|++++|.++++++...
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 66666677777777777777777777776654
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=7.4e-18 Score=181.43 Aligned_cols=421 Identities=12% Similarity=-0.006 Sum_probs=294.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-CcchHHHHHHHH
Q 043490 7 IYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--R-NVVSWTALISGY 83 (589)
Q Consensus 7 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~ 83 (589)
.+......+.+.|++++|...|+..++. . |++..|..+...|.+.|++++|++.+++..+ | +...|..+..+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~-~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC-K---PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-C---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3455677888899999999999998865 2 5678899999999999999999999998764 3 556899999999
Q ss_pred HhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhcCCHHHHHHHHhhC
Q 043490 84 AQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSKSCADEAWKVFENM 163 (589)
Q Consensus 84 ~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~g~~~~A~~lf~~m 163 (589)
...|++++|+.-|.........+......++.......+.......++. .+.+...+..+.+.+.....+.+..-++..
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILET-KPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 9999999999988765443111111111111111011111111111111 111111222221111111111111111111
Q ss_pred CCCCh---hHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHhCcCcHHHHHHH
Q 043490 164 EFRNV---ISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREG-MAP-DWCTFSIVLKACAGLVTERHASAV 238 (589)
Q Consensus 164 ~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~a~~~~~~~~~a~~i 238 (589)
.+-+. ..+..+...+. + ....+++++|++.|++....+ ..| +...+..+...+...|++++|...
T Consensus 284 ~~~~~~~~~~~~~l~~~~~---------e-~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSP---------E-SKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred cccccccccchHHHHHHHH---------H-hhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11111 11111110000 0 023468899999999998765 234 345677777778899999999999
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-
Q 043490 239 HSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPD- 313 (589)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~- 313 (589)
++..++.. +.+...|..+...|...|++++|...|++.. ..+...|..+...|...|++++|+..|++. .+.|+
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 99998864 4456788899999999999999999999876 345788999999999999999999999999 77775
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH--------HH
Q 043490 314 SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPDS--------VI 384 (589)
Q Consensus 314 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~--------~~ 384 (589)
...+..+..++.+.|++++|...|+...+.. +.+...++.+...|...|++++|.+.|++. .+.|+. ..
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 5577778888999999999999999987532 235678899999999999999999999986 444431 11
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 385 WSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 385 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
++..+..+...|++++|...++++++++|++...+..++.+|...|++++|.+.|++..+.
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2222233445699999999999999999999889999999999999999999999987653
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=9.7e-20 Score=177.90 Aligned_cols=414 Identities=14% Similarity=0.160 Sum_probs=328.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHH
Q 043490 8 YATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK---RNVVSWTALISGYA 84 (589)
Q Consensus 8 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 84 (589)
...|.+..-+.|++.+|++.-..+-...+ .+....-.+-..+.+..+.+....--....+ .-..+|..+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~---t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP---TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC---CcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHH
Confidence 34566777789999999986655444344 4444444445667777777665443322222 24568999999999
Q ss_pred hCCChhHHHHHHHHHHhccCCCce-eHHHHHHHhc----hhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc--CCHHHHH
Q 043490 85 QHGNAEECFRLFCSLLQYFFPNEF-SLASVLISCD----YLHGKLVHALALKFSLDAHVYVANALINMYSK--SCADEAW 157 (589)
Q Consensus 85 ~~g~~~~A~~~~~~m~~~~~p~~~-t~~~~l~a~~----~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~--g~~~~A~ 157 (589)
..|++++|+.+|+.|.+. .|+-. .|..+-.++. ...+-+.+..+++ +.|+.....+-+.-+.+ |++++|.
T Consensus 128 erg~~~~al~~y~~aiel-~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIEL-KPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhc-CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhH
Confidence 999999999999999886 44433 3444333333 4455555555543 46666655554444444 9999998
Q ss_pred HHHhhCCC--CC-hhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhCcCcHH
Q 043490 158 KVFENMEF--RN-VISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPD-WCTFSIVLKACAGLVTER 233 (589)
Q Consensus 158 ~lf~~m~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~ 233 (589)
..+-+..+ |. .+.|+.|...+ ...|+..+|+..|++... +.|+ ...|..+...+...+.++
T Consensus 205 ~cYlkAi~~qp~fAiawsnLg~~f-------------~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 205 ACYLKAIETQPCFAIAWSNLGCVF-------------NAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHHHHhhCCceeeeehhcchHH-------------hhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcch
Confidence 88877553 43 46799998888 889999999999999876 4555 357888888999999999
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 043490 234 HASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTY--HD-LVSWNSILKAYALHGQAKEALQLFSNM-N 309 (589)
Q Consensus 234 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 309 (589)
.|...+..+.... +....++..|...|-..|.+|.|...|++..+ |+ ..+|+.|..++-..|+..+|.+.|.+. .
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999988887664 55677888888999999999999999999874 43 469999999999999999999999999 7
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHH
Q 043490 310 VQPDS-ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQ-LDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIW 385 (589)
Q Consensus 310 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~ 385 (589)
..|+. .+.+.|...+...|.+++|..+|.... .+.|. ....+.|...|-+.|++++|+..+++. .++|+ ...+
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~ 425 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL 425 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH
Confidence 77875 588999999999999999999998775 44564 457889999999999999999999988 88998 8899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 386 SVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 386 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
+.+...|...|+.+.|.+.+.+++..+|.-..++..|..+|-.+|+..+|+.-++...+..
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 9999999999999999999999999999888999999999999999999999999887644
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=3.7e-17 Score=187.48 Aligned_cols=423 Identities=14% Similarity=0.090 Sum_probs=280.8
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCc---chHHHH--------
Q 043490 13 HACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--RNV---VSWTAL-------- 79 (589)
Q Consensus 13 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~---~~~~~l-------- 79 (589)
..+...|++++|...++.+++..| .+..++..|...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P---~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANP---KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 344556777777777777766545 5666677777777777777777777766543 221 122222
Q ss_pred ----HHHHHhCCChhHHHHHHHHHHhccCCCce-eHHHHHHHhc----hhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 043490 80 ----ISGYAQHGNAEECFRLFCSLLQYFFPNEF-SLASVLISCD----YLHGKLVHALALKFSLDAHVYVANALINMYSK 150 (589)
Q Consensus 80 ----i~~~~~~g~~~~A~~~~~~m~~~~~p~~~-t~~~~l~a~~----~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~ 150 (589)
...+.+.|++++|+..|++..+. .|+.. .+..+-.... .+.+...+..+++.. +.+...+..+...|..
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQV-DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 23455667777777777776654 22222 1111111111 445555555555432 1223334444444433
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcC
Q 043490 151 SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLV 230 (589)
Q Consensus 151 g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 230 (589)
++.++|...++.++.............+ ....+..--+.+...|++++|++.|++..+.. +-+...+..+...+.+.|
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l-~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSL-QNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 4455666555554422111110000000 00000000112367899999999999998853 224567778888899999
Q ss_pred cHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC----Chh---------HHHHHHHHHHHcCC
Q 043490 231 TERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYH----DLV---------SWNSILKAYALHGQ 297 (589)
Q Consensus 231 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~---------~~~~li~~~~~~g~ 297 (589)
+.++|...++.+++.. +.+...+..+...+...|+.++|...++.+... +.. .+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999998764 456666666666778899999999999998632 111 12345667889999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 043490 298 AKEALQLFSNMNVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM 376 (589)
Q Consensus 298 ~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 376 (589)
.++|+++++.- +++...+..+...+.+.|++++|.+.|+...+. .| +...+..+...|...|++++|++.++..
T Consensus 589 ~~eA~~~l~~~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 589 EAEAEALLRQQ--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999853 334456777888899999999999999998754 44 5678889999999999999999999988
Q ss_pred -CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh------hHHHHHHHHhhhcCChHHHHHHHHHHh-cCCC
Q 043490 377 -PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDS------LGFVQMSNIYCLSGSFNKARLIRKEMK-GSRV 447 (589)
Q Consensus 377 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~ 447 (589)
...|+ ..++..+..++...|++++|.+.++++.+..|+++ ..+..++.++.+.|++++|...+++.. ..|+
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 44554 66777888899999999999999999998765443 356677899999999999999998775 3444
Q ss_pred c
Q 043490 448 R 448 (589)
Q Consensus 448 ~ 448 (589)
.
T Consensus 744 ~ 744 (1157)
T PRK11447 744 T 744 (1157)
T ss_pred C
Confidence 3
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=8.8e-19 Score=178.94 Aligned_cols=287 Identities=12% Similarity=0.118 Sum_probs=240.0
Q ss_pred Hhc-CCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHH
Q 043490 148 YSK-SCADEAWKVFENMEF--R-NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPD---WCTFS 220 (589)
Q Consensus 148 y~~-g~~~~A~~lf~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~ 220 (589)
+.. |++++|...|.++.+ | +..+|..+...+ ...|++++|..+++.+...+..++ ..++.
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-------------~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLF-------------RRRGEVDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH-------------HHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 445 999999999999874 3 455788888888 899999999999999987543222 25678
Q ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC--------hhHHHHHHHHH
Q 043490 221 IVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHD--------LVSWNSILKAY 292 (589)
Q Consensus 221 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~ 292 (589)
.+...+...|+++.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+.+ ...|..+...+
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 88889999999999999999998764 5678899999999999999999999999986321 12456677888
Q ss_pred HHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccC--cchHHHHHHHHhhcCCHHH
Q 043490 293 ALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQ--LDHYACMVDLLGRVGRILE 368 (589)
Q Consensus 293 ~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~ 368 (589)
.+.|+.++|+..|+++ ...|+ ..++..+...+.+.|++++|.++++.+.+. .|+ ..+++.++.+|.+.|++++
T Consensus 191 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 191 LARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999 66665 457778888999999999999999998753 343 4567889999999999999
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhh---cCChHHHHHHHHHHhc
Q 043490 369 AEKLIREM-PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCL---SGSFNKARLIRKEMKG 444 (589)
Q Consensus 369 A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~ 444 (589)
|...++++ ...|+...+..+...+.+.|++++|..+++++.+..|++ ..+..++..+.. .|+.+++..++++|.+
T Consensus 268 A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~-~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 268 GLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSL-RGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH-HHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 99999998 557887777889999999999999999999999999955 466666666554 5699999999999999
Q ss_pred CCCccCCc
Q 043490 445 SRVRKYPG 452 (589)
Q Consensus 445 ~~~~~~~~ 452 (589)
++++++|.
T Consensus 347 ~~~~~~p~ 354 (389)
T PRK11788 347 EQLKRKPR 354 (389)
T ss_pred HHHhCCCC
Confidence 99998885
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=1.8e-18 Score=176.62 Aligned_cols=284 Identities=15% Similarity=0.150 Sum_probs=211.3
Q ss_pred HHHHHhcCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHH
Q 043490 49 INMYAKFGYLDDARHLFDEMPK--R-NVVSWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLV 125 (589)
Q Consensus 49 i~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~ 125 (589)
...+...|++++|...|+++.+ | +..+|..+...+.+.|++++|+.+++.+... |+...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~---------------- 103 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR--PDLTR---------------- 103 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC--CCCCH----------------
Confidence 3445677888888888888764 3 3456778888888888888888888888764 11000
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCC---CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHH
Q 043490 126 HALALKFSLDAHVYVANALINMYSK-SCADEAWKVFENMEF---RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEAL 201 (589)
Q Consensus 126 ~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~ 201 (589)
.....++..+...|.+ |++++|..+|+++.+ .+..+++.++..+ .+.|++++|+
T Consensus 104 ---------~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~-------------~~~g~~~~A~ 161 (389)
T PRK11788 104 ---------EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIY-------------QQEKDWQKAI 161 (389)
T ss_pred ---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHH-------------HHhchHHHHH
Confidence 0012356677778888 888888888888764 4566788888888 8888888888
Q ss_pred HHHHHHHHcCCCCCH----HHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 043490 202 FLFRQLQREGMAPDW----CTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKM 277 (589)
Q Consensus 202 ~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 277 (589)
+.++++...+..++. ..+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 240 (389)
T PRK11788 162 DVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERV 240 (389)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888888776544332 234556667778888888888888888764 445667778888888888888888888887
Q ss_pred CC--CC--hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcch
Q 043490 278 TY--HD--LVSWNSILKAYALHGQAKEALQLFSNM-NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDH 352 (589)
Q Consensus 278 ~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 352 (589)
.+ |+ ..+++.++.+|...|+.++|...++++ ...|+...+..+...+.+.|++++|.++++.+.+. .|+...
T Consensus 241 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~ 317 (389)
T PRK11788 241 EEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRG 317 (389)
T ss_pred HHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHH
Confidence 73 33 245778888888888888888888888 66777777777888888888888888888877643 577777
Q ss_pred HHHHHHHHhh---cCCHHHHHHHHHhC
Q 043490 353 YACMVDLLGR---VGRILEAEKLIREM 376 (589)
Q Consensus 353 ~~~li~~~~~---~g~~~~A~~~~~~m 376 (589)
++.++..+.. .|+.+++..++++|
T Consensus 318 ~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 318 FHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHhhhccCCccchhHHHHHHHH
Confidence 8877777664 45888888888877
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=2.9e-16 Score=172.23 Aligned_cols=391 Identities=12% Similarity=0.040 Sum_probs=283.7
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-CcchHHHHHH
Q 043490 5 TQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--R-NVVSWTALIS 81 (589)
Q Consensus 5 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~ 81 (589)
+.-..-.+......|+.++|.+++.......+ .+...+..+...+...|++++|..+|++..+ | +...+..+..
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~---~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQ---LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34455667788889999999999998876434 6666789999999999999999999998542 3 5667888889
Q ss_pred HHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHH
Q 043490 82 GYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVF 160 (589)
Q Consensus 82 ~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf 160 (589)
.+.+.|++++|+..+++..+. . +.+.. +..+..++.. |+.++|...+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~-~------------------------------P~~~~-~~~la~~l~~~g~~~~Al~~l 139 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSG-A------------------------------PDKAN-LLALAYVYKRAGRHWDELRAM 139 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-C------------------------------CCCHH-HHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999998765 1 22334 6667777888 9999999999
Q ss_pred hhCCC--C-ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHH-----
Q 043490 161 ENMEF--R-NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDW------CTFSIVLKAC----- 226 (589)
Q Consensus 161 ~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~a~----- 226 (589)
++..+ | +...+..+...+ ...|..++|++.+++... .|+. .....++...
T Consensus 140 ~~al~~~P~~~~~~~~la~~l-------------~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 140 TQALPRAPQTQQYPTEYVQAL-------------RNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHH-------------HHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc
Confidence 98764 3 445566677777 666777777776665442 2221 0111112221
Q ss_pred hCcCcH---HHHHHHHHHHHHh-CCCCcHH-HH-HH---HHHHHHhcCCHHHHHHHHhhcCCCC---hh-HHHHHHHHHH
Q 043490 227 AGLVTE---RHASAVHSLIAKY-GFEDDTV-IA-NA---LIHAYARCGSISLSKQVFDKMTYHD---LV-SWNSILKAYA 293 (589)
Q Consensus 227 ~~~~~~---~~a~~i~~~~~~~-g~~~~~~-~~-~~---li~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~ 293 (589)
...+.+ +.|.+.++.+.+. .-.|+.. .+ .+ .+..+...|++++|...|+.+...+ +. .-..+...|.
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl 283 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYL 283 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 112233 6777788887754 2222221 11 11 1233456789999999999988432 11 1222567889
Q ss_pred HcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------CccC---cchHH
Q 043490 294 LHGQAKEALQLFSNM-NVQPDS-----ATFVSLLSACSHAGLVQEGNKVFHSMLENHG----------VVPQ---LDHYA 354 (589)
Q Consensus 294 ~~g~~~~A~~~~~~m-~~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~ 354 (589)
..|++++|+..|+++ ...|.. .....+..++...|++++|.++++.+..... -.|+ ...+.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 999999999999998 444432 3456667778899999999999998865321 0122 12345
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCCh
Q 043490 355 CMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSF 432 (589)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 432 (589)
.+...+...|++++|++.++++ ...|+ ...+..+...+...|++++|++.++++++++|++...+..++..+.+.|++
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH
Confidence 6778888999999999999998 44554 788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 043490 433 NKARLIRKEMKGSR 446 (589)
Q Consensus 433 ~~a~~~~~~m~~~~ 446 (589)
++|..+++.+.+..
T Consensus 444 ~~A~~~~~~ll~~~ 457 (765)
T PRK10049 444 RQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987643
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=2.6e-15 Score=165.13 Aligned_cols=432 Identities=10% Similarity=-0.011 Sum_probs=302.3
Q ss_pred ChhHHHHH-HHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHh-cCChHHHHHHHhcCCCCCcchHHHHHH
Q 043490 4 STQIYATL-FHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAK-FGYLDDARHLFDEMPKRNVVSWTALIS 81 (589)
Q Consensus 4 ~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~m~~~~~~~~~~li~ 81 (589)
++.+.... .+.+.+.|++++|..++..+.+..+ .+......|..+|.. .++ ++|..++....+.|+..+..+..
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p---l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~ 255 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT---LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYAT 255 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHH
Confidence 34445555 8999999999999999999999855 667767888888888 477 99999987655578899999999
Q ss_pred HHHhCCChhHHHHHHHHHHhc--cCCCceeHHHHHHHhc-h----------------------------hhHHHHHHHHH
Q 043490 82 GYAQHGNAEECFRLFCSLLQY--FFPNEFSLASVLISCD-Y----------------------------LHGKLVHALAL 130 (589)
Q Consensus 82 ~~~~~g~~~~A~~~~~~m~~~--~~p~~~t~~~~l~a~~-~----------------------------~~~~~~~~~~~ 130 (589)
.|.+.|+.++|.++++++... ..|+..++.-.+.-.. . ..+.......+
T Consensus 256 ~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (987)
T PRK09782 256 ALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL 335 (987)
T ss_pred HHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999999998776 4466666655544332 0 00000000001
Q ss_pred HhcCCCchh----------------------------------HHHHHHHHHhc-CCHHHHHHHHhhCCC--C----Chh
Q 043490 131 KFSLDAHVY----------------------------------VANALINMYSK-SCADEAWKVFENMEF--R----NVI 169 (589)
Q Consensus 131 ~~g~~~~~~----------------------------------~~~~li~~y~~-g~~~~A~~lf~~m~~--~----~~~ 169 (589)
....|... ..--+.-...+ |+.++|.++|...-. + +..
T Consensus 336 -~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (987)
T PRK09782 336 -LATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQT 414 (987)
T ss_pred -hcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHH
Confidence 01111111 11111112233 555666666655432 1 122
Q ss_pred HHHHHHHHHHcCCc---HHHHHHHH---------HHcCCHHHHHHHHHHHHHc-CC-CC--CHHHHHHHHHHHhCcCcHH
Q 043490 170 SWNSMIAAFRACKL---EAQAIELF---------AKMKNEEEALFLFRQLQRE-GM-AP--DWCTFSIVLKACAGLVTER 233 (589)
Q Consensus 170 ~~~~li~~~~~~g~---~~~a~~~~---------~~~g~~~~A~~~~~~m~~~-g~-~p--~~~t~~~ll~a~~~~~~~~ 233 (589)
.-+-++..|.+.+. ..++..+- .-.|+..++.......... +. ++ +...|..+..++.. ++.+
T Consensus 415 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~ 493 (987)
T PRK09782 415 LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPG 493 (987)
T ss_pred HHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcH
Confidence 33355556655544 22222220 0123333323223322221 12 23 45666666666665 7888
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 043490 234 HASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT--YHDLVSWNSILKAYALHGQAKEALQLFSNM-NV 310 (589)
Q Consensus 234 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 310 (589)
+|...+....... |+......+...+...|++++|...|+++. .++...+..+...+.+.|+.++|...|++. ..
T Consensus 494 eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 494 VALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8999887777653 555444455556678999999999999876 345566777888899999999999999999 66
Q ss_pred CCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 043490 311 QPDSA-TFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSV 387 (589)
Q Consensus 311 ~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ 387 (589)
.|+.. .+..+.......|++++|...++...+ +.|+...|..+..++.+.|+.++|+..+++. ...|+ ...++.
T Consensus 572 ~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~n 648 (987)
T PRK09782 572 GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAA 648 (987)
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 66554 333444455567999999999998874 4677888999999999999999999999988 66776 778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 388 LLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 388 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
+..++...|+.++|+..++++++.+|.++..+..+..+|...|++++|...+++..+..
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88899999999999999999999999999999999999999999999999999987654
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=2.1e-15 Score=165.77 Aligned_cols=418 Identities=12% Similarity=0.044 Sum_probs=282.8
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCcchHHHHHHHHHhCCChhHHHH
Q 043490 17 LHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--RNVVSWTALISGYAQHGNAEECFR 94 (589)
Q Consensus 17 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~ 94 (589)
..|++++|...|+++++..| .+..++..|...|.+.|+.++|+..+++..+ |+-.-|..++..+ +++.+|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP---~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVP---DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHH
Confidence 44899999999999998877 7788899999999999999999999998765 3323333333322 78888889
Q ss_pred HHHHHHhccCCCceeHHHHHHHh---------c-hhhHHHHHHHHHHhcCCCchhHHHHH-HHHHhc-CCHHHHHHHHhh
Q 043490 95 LFCSLLQYFFPNEFSLASVLISC---------D-YLHGKLVHALALKFSLDAHVYVANAL-INMYSK-SCADEAWKVFEN 162 (589)
Q Consensus 95 ~~~~m~~~~~p~~~t~~~~l~a~---------~-~~~~~~~~~~~~~~g~~~~~~~~~~l-i~~y~~-g~~~~A~~lf~~ 162 (589)
+|+++... .|+......++... . .+.+..... .......|+..+.... ...|.+ |++++|.+++.+
T Consensus 130 ~ye~l~~~-~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 130 TVEELLAQ-QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHHh-CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 99988876 33333332222221 1 333333333 2222222333333333 555555 555555555544
Q ss_pred CC----------------------------------CCChhHHHHHHHHHHcCCcHHHHHHHH-----------------
Q 043490 163 ME----------------------------------FRNVISWNSMIAAFRACKLEAQAIELF----------------- 191 (589)
Q Consensus 163 m~----------------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~----------------- 191 (589)
+. +.|...+..+...|.+.|+.++|.+.+
T Consensus 208 L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 208 ARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred HHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 32 123444555666666666666665441
Q ss_pred --------------------------------------------------------------------------------
Q 043490 192 -------------------------------------------------------------------------------- 191 (589)
Q Consensus 192 -------------------------------------------------------------------------------- 191 (589)
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence
Q ss_pred -------------------HHcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHhCcCc---HHHHHHH---------
Q 043490 192 -------------------AKMKNEEEALFLFRQLQRE-G-MAPDWCTFSIVLKACAGLVT---ERHASAV--------- 238 (589)
Q Consensus 192 -------------------~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~a~~~~~~---~~~a~~i--------- 238 (589)
.+.|+.++|.++|++.... + -.++.....-++..+.+.+. ...+..+
T Consensus 368 ~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 447 (987)
T PRK09782 368 LYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ 447 (987)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh
Confidence 4567777777777776552 1 22333344456666655544 2222111
Q ss_pred -------------HHHHHHh-CC-CC--cHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHH--HHHcCCHH
Q 043490 239 -------------HSLIAKY-GF-ED--DTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKA--YALHGQAK 299 (589)
Q Consensus 239 -------------~~~~~~~-g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~--~~~~g~~~ 299 (589)
.....+. +. ++ +...+..+...+.. |+.++|...|.+.....+..++.+..+ +.+.|+++
T Consensus 448 ~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 448 RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYA 526 (987)
T ss_pred HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHH
Confidence 1111111 11 34 66777888888877 788889987777653222344444444 46899999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCc-chHHHHHHHHhhcCCHHHHHHHHHhC-
Q 043490 300 EALQLFSNM-NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQL-DHYACMVDLLGRVGRILEAEKLIREM- 376 (589)
Q Consensus 300 ~A~~~~~~m-~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m- 376 (589)
+|+..|+++ ...|+...+..+..++.+.|+.++|.+.++...+. .|+. ..+..+...+.+.|++++|...+++.
T Consensus 527 eAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l---~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 527 TALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR---GLGDNALYWWLHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999 55666666777788889999999999999988653 3432 23333334445569999999999988
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 377 PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 377 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
...|+...|..+..++.+.|++++|+..++++.+++|+++..+..+..++...|++++|+..+++..+..
T Consensus 604 ~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 604 NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 6678888999999999999999999999999999999999999999999999999999999999887653
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=2.7e-16 Score=168.89 Aligned_cols=314 Identities=11% Similarity=0.020 Sum_probs=169.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCC
Q 043490 11 LFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--R-NVVSWTALISGYAQHG 87 (589)
Q Consensus 11 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g 87 (589)
++..+.+.|++++|..+++.++...| .+......++......|++++|...|+++.+ | +...|..+...+.+.|
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p---~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAK---NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCC---CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 44555566666666666666665544 4444555555555566666666666666543 2 3445566666666666
Q ss_pred ChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCC--
Q 043490 88 NAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFENME-- 164 (589)
Q Consensus 88 ~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~-- 164 (589)
++++|+..|++..+. . +.+...+..+...|.. |++++|...++.+.
T Consensus 125 ~~~~Ai~~l~~Al~l-~------------------------------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 125 QYATVADLAEQAWLA-F------------------------------SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred CHHHHHHHHHHHHHh-C------------------------------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 666666666665542 1 1223344555555666 66666666665542
Q ss_pred CCC-hhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Q 043490 165 FRN-VISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIA 243 (589)
Q Consensus 165 ~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 243 (589)
.|+ ...+..+ ..+ .+.|++++|...++++......++...+..+..++...|+.++|.+.++.+.
T Consensus 174 ~P~~~~a~~~~-~~l-------------~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al 239 (656)
T PRK15174 174 VPPRGDMIATC-LSF-------------LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESAL 239 (656)
T ss_pred CCCCHHHHHHH-HHH-------------HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 122 2222222 224 5556666666666665544322333334444455556666666666666666
Q ss_pred HhCCCCcHHHHHHHHHHHHhcCCHHH----HHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-
Q 043490 244 KYGFEDDTVIANALIHAYARCGSISL----SKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDS- 314 (589)
Q Consensus 244 ~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~- 314 (589)
+.. +.+...+..+...|...|++++ |...|++.. ..+...+..+...+.+.|++++|+..+++. ...|+.
T Consensus 240 ~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~ 318 (656)
T PRK15174 240 ARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP 318 (656)
T ss_pred hcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 554 4445555566666666666654 555555554 223445556666666666666666666666 444442
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcc-hHHHHHHHHhhcCCHHHHHHHHHhC
Q 043490 315 ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLD-HYACMVDLLGRVGRILEAEKLIREM 376 (589)
Q Consensus 315 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m 376 (589)
.....+..++...|++++|...++.+... .|+.. .+..+..++...|+.++|.+.|++.
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444555555666666666666555432 23322 2222344555566666666666554
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=3.8e-16 Score=167.80 Aligned_cols=321 Identities=12% Similarity=0.018 Sum_probs=251.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhH
Q 043490 46 NHLINMYAKFGYLDDARHLFDEMPK--R-NVVSWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHG 122 (589)
Q Consensus 46 ~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~ 122 (589)
.-.+..+.+.|++++|+.+++.... | +...+..++.+....|++++|+..|+++... .
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~-~------------------ 106 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV-N------------------ 106 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh-C------------------
Confidence 3455667788999999998887653 2 4456666667777899999999999988764 2
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHH
Q 043490 123 KLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFENMEF--R-NVISWNSMIAAFRACKLEAQAIELFAKMKNEE 198 (589)
Q Consensus 123 ~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~ 198 (589)
+.+...+..+...+.+ |++++|...|++... | +...|..+...+ .+.|+++
T Consensus 107 ------------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l-------------~~~g~~~ 161 (656)
T PRK15174 107 ------------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTL-------------VLMDKEL 161 (656)
T ss_pred ------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-------------HHCCChH
Confidence 2234456667778888 999999999998764 3 566788888888 9999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 043490 199 EALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT 278 (589)
Q Consensus 199 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 278 (589)
+|...++++......+ ...+.. +..+...|++++|...++.+++..-.++......+...+.+.|++++|...|++..
T Consensus 162 eA~~~~~~~~~~~P~~-~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al 239 (656)
T PRK15174 162 QAISLARTQAQEVPPR-GDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESAL 239 (656)
T ss_pred HHHHHHHHHHHhCCCC-HHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999887654322 223323 33477889999999999998876533445555666788899999999999999876
Q ss_pred ---CCChhHHHHHHHHHHHcCCHHH----HHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-
Q 043490 279 ---YHDLVSWNSILKAYALHGQAKE----ALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP- 348 (589)
Q Consensus 279 ---~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p- 348 (589)
..+...+..+...|...|++++ |+..|++. ...|+ ...+..+...+...|++++|...++...+. .|
T Consensus 240 ~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~ 316 (656)
T PRK15174 240 ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPD 316 (656)
T ss_pred hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCC
Confidence 3456788889999999999986 89999999 77776 457888889999999999999999998753 45
Q ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 043490 349 QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPDSVI-WSVLLGSCRKHGETRLAELAATKLKQLEPGD 415 (589)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 415 (589)
+...+..+...|.+.|++++|.+.++++ ...|+... +..+..++...|+.++|...++++.+..|++
T Consensus 317 ~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 317 LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 3456777889999999999999999988 45676433 4445678899999999999999999998865
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=4.3e-15 Score=163.10 Aligned_cols=367 Identities=13% Similarity=0.061 Sum_probs=276.0
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-CcchHHHHHH
Q 043490 5 TQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--R-NVVSWTALIS 81 (589)
Q Consensus 5 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~ 81 (589)
...+..+...+...|++++|.++++..++..| .+...+..+...+...|++++|+..+++..+ | +.. |..+..
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~ 124 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP---QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAY 124 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence 34578888999999999999999999998766 7788888999999999999999999998754 4 455 888889
Q ss_pred HHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHH
Q 043490 82 GYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVF 160 (589)
Q Consensus 82 ~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf 160 (589)
.+...|+.++|+..++++.+. . +.+......+...+.+ +..+.|.+.+
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~-~------------------------------P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPR-A------------------------------PQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-C------------------------------CCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 999999999999999999875 2 2234444556677777 9999999999
Q ss_pred hhCCCCChh--------HHHHHHHHHHcCCcHHHHHHHHHHcCCH---HHHHHHHHHHHHc-CCCCCHH-HHH----HHH
Q 043490 161 ENMEFRNVI--------SWNSMIAAFRACKLEAQAIELFAKMKNE---EEALFLFRQLQRE-GMAPDWC-TFS----IVL 223 (589)
Q Consensus 161 ~~m~~~~~~--------~~~~li~~~~~~g~~~~a~~~~~~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll 223 (589)
+.... ++. ....++......+. ...+++ ++|++.++.+.+. ...|+.. .+. ..+
T Consensus 174 ~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~--------~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 174 DDANL-TPAEKRDLEADAAAELVRLSFMPTR--------SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HhCCC-CHHHHHHHHHHHHHHHHHhhccccc--------ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 98775 221 11111211100000 112233 7788889888854 2233321 111 113
Q ss_pred HHHhCcCcHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------hhHHHHHHHHHHHc
Q 043490 224 KACAGLVTERHASAVHSLIAKYGFE-DDTVIANALIHAYARCGSISLSKQVFDKMTYHD-------LVSWNSILKAYALH 295 (589)
Q Consensus 224 ~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~ 295 (589)
.++...|+.++|...|+.+.+.+-+ |+- ....+...|...|++++|+..|+++...+ ...+..+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 4456779999999999999987632 221 22335778999999999999999876322 23466677788999
Q ss_pred CCHHHHHHHHHhC-CCCC-------------CH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHH
Q 043490 296 GQAKEALQLFSNM-NVQP-------------DS---ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVD 358 (589)
Q Consensus 296 g~~~~A~~~~~~m-~~~p-------------~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 358 (589)
|++++|...++++ ...| +. ..+..+...+...|++++|.+.++.+.... +.+...+..+..
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA~ 401 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYAS 401 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 9999999999999 4433 31 244566778888999999999999987542 335678889999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhH
Q 043490 359 LLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLG 418 (589)
Q Consensus 359 ~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 418 (589)
.+...|++++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++.+
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999998 66776 6677777888999999999999999999999988754
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=1.3e-14 Score=156.44 Aligned_cols=384 Identities=13% Similarity=0.016 Sum_probs=272.1
Q ss_pred CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHH
Q 043490 2 LHSTQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKR---NVVSWTA 78 (589)
Q Consensus 2 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~ 78 (589)
.|++..|..+..++.+.|++++|...+..+++..| .+...+..+..+|...|++++|+.-|...... +......
T Consensus 157 ~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p---~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~ 233 (615)
T TIGR00990 157 KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP---DYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQ 233 (615)
T ss_pred CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 47888899999999999999999999999998766 77889999999999999999999887654321 1111122
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHH---HHHhchhhHHHHHHHHHHhcCCCchhHHHHHHH-----HH-h
Q 043490 79 LISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASV---LISCDYLHGKLVHALALKFSLDAHVYVANALIN-----MY-S 149 (589)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~---l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~-----~y-~ 149 (589)
++.-+.. ..+........+...++...+..+ +..........-.. .....+......++. .. .
T Consensus 234 ~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~e~~ 305 (615)
T TIGR00990 234 AVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE----DSNELDEETGNGQLQLGLKSPESK 305 (615)
T ss_pred HHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh----cccccccccccchHHHHHHHHHhh
Confidence 2221111 122232333323211111122111 11100000000000 000111111111111 11 2
Q ss_pred c-CCHHHHHHHHhhCCC-----C-ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHH
Q 043490 150 K-SCADEAWKVFENMEF-----R-NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPD-WCTFSI 221 (589)
Q Consensus 150 ~-g~~~~A~~lf~~m~~-----~-~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ 221 (589)
. +++++|.+.|+...+ | +...|+.+...+ ...|++++|+..|++.... .|+ ...|..
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~-------------~~~g~~~eA~~~~~kal~l--~P~~~~~~~~ 370 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFK-------------CLKGKHLEALADLSKSIEL--DPRVTQSYIK 370 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHc--CCCcHHHHHH
Confidence 2 789999999988753 2 345677777777 8899999999999998875 454 557888
Q ss_pred HHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCH
Q 043490 222 VLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQA 298 (589)
Q Consensus 222 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 298 (589)
+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++.. ..+...|..+...+.+.|++
T Consensus 371 la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 371 RASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCH
Confidence 8888899999999999999998875 6678899999999999999999999999886 33567888899999999999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCc-ch-------HHHHHHHHhhcCCHHH
Q 043490 299 KEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQL-DH-------YACMVDLLGRVGRILE 368 (589)
Q Consensus 299 ~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~-------~~~li~~~~~~g~~~~ 368 (589)
++|+..|++. ...|+ ...+..+..++...|++++|.+.|+...+. .|+. .. ++.....+...|++++
T Consensus 450 ~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 450 ASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999 66665 568888899999999999999999987643 3421 11 1222233445799999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 043490 369 AEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGD 415 (589)
Q Consensus 369 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 415 (589)
|.+++++. ...|+ ...+..+...+...|++++|...++++.++.+..
T Consensus 527 A~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 527 AENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 99999986 55665 5678999999999999999999999999887643
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=1.2e-13 Score=148.93 Aligned_cols=412 Identities=11% Similarity=0.049 Sum_probs=268.3
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCCCCCh-hHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHH-H--HHHHHhCCCh
Q 043490 14 ACALHGNIKQAMQLHEHMINNFPNEPQDL-FVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTA-L--ISGYAQHGNA 89 (589)
Q Consensus 14 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~-l--i~~~~~~g~~ 89 (589)
...+.|++..|...+.++++..| .+. .++ .++..+...|+.++|+..+++...|+...+.. + ...|...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P---~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGP---LQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCc---cchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 34678999999999999998754 442 344 88899999999999999999998775544443 3 4477888999
Q ss_pred hHHHHHHHHHHhccCCCceeH-HHHHHHhc----hhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhC
Q 043490 90 EECFRLFCSLLQYFFPNEFSL-ASVLISCD----YLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFENM 163 (589)
Q Consensus 90 ~~A~~~~~~m~~~~~p~~~t~-~~~l~a~~----~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m 163 (589)
++|+++|+++.+. .|+.... ..+..... .+.+......+.+ ..|+...+-.++..+.. ++..+|...++++
T Consensus 119 d~Aiely~kaL~~-dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKK-DPTNPDLISGMIMTQADAGRGGVVLKQATELAE--RDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhh-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999999999886 3333221 11111111 2222222222222 23333333333333333 4444455555555
Q ss_pred CC--C-ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH------HHHHHHH-----hCc
Q 043490 164 EF--R-NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTF------SIVLKAC-----AGL 229 (589)
Q Consensus 164 ~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------~~ll~a~-----~~~ 229 (589)
.+ | +...+..+..+. .+.|-...|+++..+-... +.+...-. ...++.- ...
T Consensus 196 l~~~P~n~e~~~~~~~~l-------------~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEIL-------------QRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred HHhCCCCHHHHHHHHHHH-------------HHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 42 2 233334444444 6666666666554432211 11111000 0111000 011
Q ss_pred Cc---HHHHHHHHHHHHHh-C-CCCcHHHH-HH---HHHHHHhcCCHHHHHHHHhhcCCC--C--hhHHHHHHHHHHHcC
Q 043490 230 VT---ERHASAVHSLIAKY-G-FEDDTVIA-NA---LIHAYARCGSISLSKQVFDKMTYH--D--LVSWNSILKAYALHG 296 (589)
Q Consensus 230 ~~---~~~a~~i~~~~~~~-g-~~~~~~~~-~~---li~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~g 296 (589)
.+ .+.|..-++.+... + .|+....| .+ .+-++.+.|++.++.+.|+.+... . ..+--.+..+|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 12 23344444444432 1 23322222 22 344667889999999999999833 2 235567889999999
Q ss_pred CHHHHHHHHHhC-CC-------CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC----------ccCcc---hHHH
Q 043490 297 QAKEALQLFSNM-NV-------QPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGV----------VPQLD---HYAC 355 (589)
Q Consensus 297 ~~~~A~~~~~~m-~~-------~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~----------~p~~~---~~~~ 355 (589)
++++|+.+|+++ .- .++......|..++..++++++|..+++.+.+.... .|+.. .+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 999999999998 21 123334578899999999999999999999652110 12221 3455
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChH
Q 043490 356 MVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFN 433 (589)
Q Consensus 356 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 433 (589)
++..+...|++.+|++.++++ ...| |...+..+...+...|.+.+|++.++.+..++|++..+...++.++...|+|+
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHH
Confidence 677889999999999999999 4445 68889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 043490 434 KARLIRKEMKGSR 446 (589)
Q Consensus 434 ~a~~~~~~m~~~~ 446 (589)
+|..+.+.+.+..
T Consensus 502 ~A~~~~~~l~~~~ 514 (822)
T PRK14574 502 QMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHHhhC
Confidence 9999998876644
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.3e-12 Score=123.44 Aligned_cols=388 Identities=15% Similarity=0.155 Sum_probs=257.1
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhc--CC-hHHHHHHHhcCC-------------
Q 043490 6 QIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKF--GY-LDDARHLFDEMP------------- 69 (589)
Q Consensus 6 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~-~~~A~~~f~~m~------------- 69 (589)
.+=+.|++.- .+|.+..+.-+++.|... |.+.+..+...|.+.-+-. .. +-.-++.|-.|.
T Consensus 117 ~~E~nL~kmI-S~~EvKDs~ilY~~m~~e--~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 117 ETENNLLKMI-SSREVKDSCILYERMRSE--NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred cchhHHHHHH-hhcccchhHHHHHHHHhc--CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 3455566543 468899999999999988 3336766666665543322 11 111122333332
Q ss_pred ----------CCCcchHHHHHHHHHhCCChhHHHHHHHHHHhc-cCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCch
Q 043490 70 ----------KRNVVSWTALISGYAQHGNAEECFRLFCSLLQY-FFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHV 138 (589)
Q Consensus 70 ----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~ 138 (589)
.....+|..||.|+++-...+.|.++|++-... ++.+..+|+.++.+.....++.+...|+...+.||.
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCch
Confidence 245678999999999999999999999999988 999999999999999988889999999999999999
Q ss_pred hHHHHHHHHHhc-CCHHHHHHHH----hhCC----CCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHH-HHHHHHHHH
Q 043490 139 YVANALINMYSK-SCADEAWKVF----ENME----FRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEE-ALFLFRQLQ 208 (589)
Q Consensus 139 ~~~~~li~~y~~-g~~~~A~~lf----~~m~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~-A~~~~~~m~ 208 (589)
+++|+++...++ |+++.|++.+ .+|. +|...+|.-+|..+ .+.++..+ |..++.+.+
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f-------------~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNF-------------KRESDPQKVASSWINDIQ 340 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHh-------------cccCCchhhhHHHHHHHH
Confidence 999999999999 9988776544 4443 58888888888887 66655533 444555543
Q ss_pred H----cCCC---C-CHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhC----CCCc---HHHHHHHHHHHHhcCCHHHHHHH
Q 043490 209 R----EGMA---P-DWCTFSIVLKACAGLVTERHASAVHSLIAKYG----FEDD---TVIANALIHAYARCGSISLSKQV 273 (589)
Q Consensus 209 ~----~g~~---p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~ 273 (589)
. +.++ | |...|.+.+..|.+..+.+.|.+++..+.... +.|+ .+-|..+....+....++.-...
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2222 2 45678888888888888888888887665321 2333 23455667777777778888888
Q ss_pred HhhcC----CCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccC------------------
Q 043490 274 FDKMT----YHDLVSWNSILKAYALHGQAKEALQLFSNM---NVQPDSATFVSLLSACSHAG------------------ 328 (589)
Q Consensus 274 ~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~t~~~ll~a~~~~g------------------ 328 (589)
|+.|. -|+..+-..++.+....|+++-.-+++..+ |-.-+...-.-++.-+++.+
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~ 500 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKC 500 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHH
Confidence 88776 355566666777777777777777777666 32222222222222222221
Q ss_pred --cHHHHHHH-HHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCH
Q 043490 329 --LVQEGNKV-FHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-------PMEPDSVIWSVLLGSCRKHGET 398 (589)
Q Consensus 329 --~~~~a~~~-~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~ 398 (589)
++.++.+. -..+. ..+......++..-.+.|.|+.++|.++|.-. +..|......-++.+..+.+++
T Consensus 501 aad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sp 577 (625)
T KOG4422|consen 501 AADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSP 577 (625)
T ss_pred HHHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCH
Confidence 01111110 01111 22334445666777777788887777776544 4445555555666666777777
Q ss_pred HHHHHHHHHHhhcC
Q 043490 399 RLAELAATKLKQLE 412 (589)
Q Consensus 399 ~~a~~~~~~~~~~~ 412 (589)
..|..+++-+...+
T Consensus 578 sqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 578 SQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHHHHcC
Confidence 77777777775544
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.64 E-value=1.2e-12 Score=135.49 Aligned_cols=425 Identities=14% Similarity=0.090 Sum_probs=295.5
Q ss_pred CChhHHHHHHHHHHccCCHHHHHHHHHHHHHh-CCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC--cchHH
Q 043490 3 HSTQIYATLFHACALHGNIKQAMQLHEHMINN-FPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--RN--VVSWT 77 (589)
Q Consensus 3 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~--~~~~~ 77 (589)
.|+...+.|.+-+--.|+++.+..+...+... .. -..-...+-.+.++|...|++++|...|.+..+ +| +..+-
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~-~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN-KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 46677778888888888888888888888776 21 002234566788888888888888888876653 33 33445
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhc---------hhhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 043490 78 ALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCD---------YLHGKLVHALALKFSLDAHVYVANALINMY 148 (589)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~---------~~~~~~~~~~~~~~g~~~~~~~~~~li~~y 148 (589)
-|.+.|.+.|+.+.+...|+..... .||..--..+|.... .+.+..+.....+.- +.|...|-.+..+|
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 6778888888888888888888775 555554444443332 133333333333322 44555666666666
Q ss_pred hcCCHHHHHHHHhhC--------CCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCH-
Q 043490 149 SKSCADEAWKVFENM--------EFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQRE---GMAPDW- 216 (589)
Q Consensus 149 ~~g~~~~A~~lf~~m--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~---g~~p~~- 216 (589)
..++.-.+..+|... ...-+...|.+..-+ ...|++.+|...|.+.... ...+|.
T Consensus 425 e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslh-------------f~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 425 EQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLH-------------FRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred HhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHH-------------HHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 665443334433322 234556677777777 7778888888888776554 122333
Q ss_pred ----HHHH-HHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHH
Q 043490 217 ----CTFS-IVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSI 288 (589)
Q Consensus 217 ----~t~~-~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 288 (589)
.|.. .+....-..++.+.|.++|..+.+.. |.-+..|--|..+.-..+...+|...+.... ..|+..|+.+
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~ 570 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLL 570 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHH
Confidence 2222 23334466779999999999998864 3334445555544445577888998888776 5677888888
Q ss_pred HHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHhHHhcCCccCcch
Q 043490 289 LKAYALHGQAKEALQLFSNM----NVQPDSATFVSLLSACSH------------AGLVQEGNKVFHSMLENHGVVPQLDH 352 (589)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m----~~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~ 352 (589)
...|.....+..|.+-|+.. ...+|..+..+|.+.|.+ .+..+.|.++|.++++. -+.|...
T Consensus 571 G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yA 648 (1018)
T KOG2002|consen 571 GNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYA 648 (1018)
T ss_pred HHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhh
Confidence 88999998888888866666 444888888888886653 24567888888877643 2347778
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--CCChhHHHHHHHHhhh
Q 043490 353 YACMVDLLGRVGRILEAEKLIREM--PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLE--PGDSLGFVQMSNIYCL 428 (589)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~ 428 (589)
-|.+.-.++..|++.+|..+|.+. ....+..+|-.+...|...|++..|+++|+...+.. .+++.+...|+.++.+
T Consensus 649 ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 649 ANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred ccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 888888999999999999999988 223356789999999999999999999999987643 3567788899999999
Q ss_pred cCChHHHHHHHHHHhcCC
Q 043490 429 SGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 429 ~g~~~~a~~~~~~m~~~~ 446 (589)
.|++.+|.+.........
T Consensus 729 ~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARHLA 746 (1018)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 999999999887765543
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.64 E-value=3.5e-12 Score=137.84 Aligned_cols=398 Identities=12% Similarity=0.065 Sum_probs=285.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhC
Q 043490 10 TLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--R-NVVSWTALISGYAQH 86 (589)
Q Consensus 10 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~ 86 (589)
.++..+...|+.++|...+++.....+ ........+...|...|++++|.++|+++.+ | |...+..++..|.+.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n---~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMN---ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc
Confidence 788888899999999999998873222 3344444446788899999999999999875 3 456677888899999
Q ss_pred CChhHHHHHHHHHHhccCCCceeHHHHHHHhc----hhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHh
Q 043490 87 GNAEECFRLFCSLLQYFFPNEFSLASVLISCD----YLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFE 161 (589)
Q Consensus 87 g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~----~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~ 161 (589)
++.++|++.++++... .|+...+..+..... ...+...+..+++.. +.+...+..++....+ |-...|.++..
T Consensus 150 ~q~~eAl~~l~~l~~~-dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 150 GRGGVVLKQATELAER-DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred CCHHHHHHHHHHhccc-CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999998776 555444422222221 223555555665553 4456777888888888 99999999888
Q ss_pred hCCC---CChhHH--HHHHHHHHcCCcHHHHHHHHHHcC---CHHHHHHHHHHHHH-cCCCCCH-H----HHHHHHHHHh
Q 043490 162 NMEF---RNVISW--NSMIAAFRACKLEAQAIELFAKMK---NEEEALFLFRQLQR-EGMAPDW-C----TFSIVLKACA 227 (589)
Q Consensus 162 ~m~~---~~~~~~--~~li~~~~~~g~~~~a~~~~~~~g---~~~~A~~~~~~m~~-~g~~p~~-~----t~~~ll~a~~ 227 (589)
+-+. +...-| ...+.-.++.+....- .... -.+.|+.-++.+.. .+-.|.. . ...-.+-++.
T Consensus 228 ~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 228 ENPNLVSAEHYRQLERDAAAEQVRMAVLPTR----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred hCccccCHHHHHHHHHHHHHHHHhhcccccc----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 7663 111111 0001111000000000 0111 23556666666654 2222322 2 2234466778
Q ss_pred CcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---------ChhHHHHHHHHHHHcCCH
Q 043490 228 GLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYH---------DLVSWNSILKAYALHGQA 298 (589)
Q Consensus 228 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~ 298 (589)
..++...+.+.++.+...+.+.-..+-.++.++|...+++++|..+|..+... +......|.-+|...+++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 89999999999999999887666678889999999999999999999988532 233356789999999999
Q ss_pred HHHHHHHHhC-CCCC---------------CHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHh
Q 043490 299 KEALQLFSNM-NVQP---------------DSA-TFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLG 361 (589)
Q Consensus 299 ~~A~~~~~~m-~~~p---------------~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 361 (589)
++|..+++++ ...| |-. .+..++..+.-.|++.+|++.++.+... -+-|......+.+.+.
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~ 461 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYL 461 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 9999999999 3222 222 3445566778899999999999999653 2337888999999999
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhH
Q 043490 362 RVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLG 418 (589)
Q Consensus 362 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 418 (589)
..|.+.+|++.++.. ...|+ ..+......++...++++.|..+.+.+.+..|+++.+
T Consensus 462 ~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 462 ARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred hcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 999999999999877 55676 6677788888899999999999999999999988754
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.63 E-value=2e-12 Score=134.00 Aligned_cols=420 Identities=13% Similarity=0.122 Sum_probs=303.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-CcchHHHHHHH
Q 043490 7 IYATLFHACALHGNIKQAMQLHEHMINNFPNEPQD-LFVTNHLINMYAKFGYLDDARHLFDEMPK--R-NVVSWTALISG 82 (589)
Q Consensus 7 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~ 82 (589)
.|-.+.+++-..|+++.|...|-+..+..+ .+ +..+--|..+|.+.|+++.|...|++..+ | +..+.-.|...
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~---d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKADN---DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccCC---CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 466678888899999999999998887633 23 55666789999999999999999998864 3 44566666666
Q ss_pred HHhCC----ChhHHHHHHHHHHhccCCCceeHHHHHHHhc---hhhHHH----HHHHHHHhcCCCchhHHHHHHHHHhc-
Q 043490 83 YAQHG----NAEECFRLFCSLLQYFFPNEFSLASVLISCD---YLHGKL----VHALALKFSLDAHVYVANALINMYSK- 150 (589)
Q Consensus 83 ~~~~g----~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~---~~~~~~----~~~~~~~~g~~~~~~~~~~li~~y~~- 150 (589)
|+..+ ..+.|..++....+...-|...|..+-...- ...... ....+...+-.+.+.+.|.+...+..
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~ 465 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRL 465 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence 76664 3455666655555443334444544443333 111122 22233345556888899999999999
Q ss_pred CCHHHHHHHHhhCCC-------CChh-------HHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 043490 151 SCADEAWKVFENMEF-------RNVI-------SWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDW 216 (589)
Q Consensus 151 g~~~~A~~lf~~m~~-------~~~~-------~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 216 (589)
|.++.|...|+.... +|.. -|| +...+ -..++++.|.++|...... .|.-
T Consensus 466 g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~-------------E~l~~~~~A~e~Yk~Ilke--hp~Y 529 (1018)
T KOG2002|consen 466 GNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLL-------------EELHDTEVAEEMYKSILKE--HPGY 529 (1018)
T ss_pred cChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHH-------------HhhhhhhHHHHHHHHHHHH--Cchh
Confidence 999999999987642 2221 232 22333 6778999999999999875 4554
Q ss_pred H-HHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC-----CCChhHHHHHHH
Q 043490 217 C-TFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT-----YHDLVSWNSILK 290 (589)
Q Consensus 217 ~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~ 290 (589)
+ .|.-++...-..+...+|...+..+.... ..++.+++.+.+.|.+...+..|.+-|+.+. .+|..+.-+|..
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH
Confidence 4 34444433345577888998888887765 5677778888889999999988888666654 235554444444
Q ss_pred HHH------------HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHH
Q 043490 291 AYA------------LHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACM 356 (589)
Q Consensus 291 ~~~------------~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 356 (589)
.|. ..+..++|+++|.+. ...| |...-+.+.-.++..|++.+|..+|.++.+.. .-...+|-.+
T Consensus 609 ~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNl 686 (1018)
T KOG2002|consen 609 VYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNL 686 (1018)
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeH
Confidence 333 235678899999998 6666 67788888889999999999999999987642 3455688899
Q ss_pred HHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHh------
Q 043490 357 VDLLGRVGRILEAEKLIREM----PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIY------ 426 (589)
Q Consensus 357 i~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~------ 426 (589)
...|..+|++-.|.++|+.. .-..+..+.+.|..++...|.+.+|.+.+..+....|.++..-..++-..
T Consensus 687 ah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s 766 (1018)
T KOG2002|consen 687 AHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAES 766 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHH
Confidence 99999999999999999876 32346889999999999999999999999999999998877655444433
Q ss_pred -------------hhcCChHHHHHHHHHHhcCCCc
Q 043490 427 -------------CLSGSFNKARLIRKEMKGSRVR 448 (589)
Q Consensus 427 -------------~~~g~~~~a~~~~~~m~~~~~~ 448 (589)
...+..+.|.++|..|...+-+
T Consensus 767 ~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 767 ILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2234567888999999876544
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=5.9e-13 Score=126.29 Aligned_cols=416 Identities=13% Similarity=0.126 Sum_probs=262.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHh--CCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC------cchHHH
Q 043490 9 ATLFHACALHGNIKQAMQLHEHMINN--FPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--RN------VVSWTA 78 (589)
Q Consensus 9 ~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~------~~~~~~ 78 (589)
..|.+.|.......+|+..++.+++. +| ..-..--.+.+.+.+...+.+|++.+..... |+ +...|.
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivknkmf~---nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVKNKMFP---NAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhcccccC---CCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 34556666667788899999988887 44 3333334556778888889999888764332 21 224555
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhccCCCcee-HHHHHHHhc---hhhHHHHHHHHHHhc------------CCCchhHHH
Q 043490 79 LISGYAQHGNAEECFRLFCSLLQYFFPNEFS-LASVLISCD---YLHGKLVHALALKFS------------LDAHVYVAN 142 (589)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t-~~~~l~a~~---~~~~~~~~~~~~~~g------------~~~~~~~~~ 142 (589)
+--.+++.|.++.|+..|+...+. .|+-.+ ++..+.+++ .+..+..+..++..- -+|+....|
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~-~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE-APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh-CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 555788999999999999998775 555443 343444444 344444454444221 123333333
Q ss_pred HHHH-----HHhcCCHHHHHHHH-------hhCCCCChhH-HHHHHHHHHcCCcHHHHHHH-------HHHcCCHHHHHH
Q 043490 143 ALIN-----MYSKSCADEAWKVF-------ENMEFRNVIS-WNSMIAAFRACKLEAQAIEL-------FAKMKNEEEALF 202 (589)
Q Consensus 143 ~li~-----~y~~g~~~~A~~lf-------~~m~~~~~~~-~~~li~~~~~~g~~~~a~~~-------~~~~g~~~~A~~ 202 (589)
-.|. -..+.+-..|++.. .-...|+-.. +.=-+...-.+...+.|.++ +.++|+++.|++
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 2221 12221112222221 1111222110 00011111111112222222 456666666666
Q ss_pred HHHHHHHcCCCCC---------------------HHHH----------HHH-----HHHHhCcCcHHHHHHHHHHHHHhC
Q 043490 203 LFRQLQREGMAPD---------------------WCTF----------SIV-----LKACAGLVTERHASAVHSLIAKYG 246 (589)
Q Consensus 203 ~~~~m~~~g~~p~---------------------~~t~----------~~l-----l~a~~~~~~~~~a~~i~~~~~~~g 246 (589)
+++-..+..-+.- ...| +.. .+.....|+++.|.+.+++.+...
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 6655543321110 0111 100 001113478888888888887654
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 043490 247 FEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLL 321 (589)
Q Consensus 247 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll 321 (589)
-.-....|| +.-.+-+.|++++|+..|-++. ..++...-.+...|-...+..+|++++-+. .+-| |+..+.-|.
T Consensus 521 asc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~ 599 (840)
T KOG2003|consen 521 ASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLA 599 (840)
T ss_pred hHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 222223333 3345677899999999988765 556777777888888899999999999888 5555 567788888
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCC-ccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HHcCCH
Q 043490 322 SACSHAGLVQEGNKVFHSMLENHGV-VPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPDSVIWSVLLGSC-RKHGET 398 (589)
Q Consensus 322 ~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-~~~g~~ 398 (589)
..|-+.|+-.+|.+.+-.- +.. +.+.++..-|..-|....-+++|+..|++. -++|+..-|..++..| ++.|++
T Consensus 600 dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH
Confidence 8999999999998877532 333 447888888888899999999999999998 6789999999988766 567999
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCCh
Q 043490 399 RLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSF 432 (589)
Q Consensus 399 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 432 (589)
+.|..+++...+..|.|......|++.+...|..
T Consensus 677 qka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 677 QKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 9999999999999999999999999999888754
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=7.8e-15 Score=142.10 Aligned_cols=247 Identities=17% Similarity=0.162 Sum_probs=112.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCTFSI-VLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLS 270 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 270 (589)
.+.|++++|++++++......+|+...|.. +...+...++.+.|.+.++.+.+.+ +.+...+..++.. ...+++++|
T Consensus 19 ~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A 96 (280)
T PF13429_consen 19 YQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEA 96 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccccccc
Confidence 788999999999976554432455555544 4445567899999999999999876 3467778888877 789999999
Q ss_pred HHHHhhcC--CCChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 043490 271 KQVFDKMT--YHDLVSWNSILKAYALHGQAKEALQLFSNM----NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENH 344 (589)
Q Consensus 271 ~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 344 (589)
.++++..- .++...+..++..+.+.|+++++.+++++. ..+++...|..+...+.+.|+.++|.+.++..++.
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~- 175 (280)
T PF13429_consen 97 LKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL- 175 (280)
T ss_dssp ---------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred ccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 99988764 456677888999999999999999999997 33557778888889999999999999999998764
Q ss_pred CCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHH
Q 043490 345 GVVP-QLDHYACMVDLLGRVGRILEAEKLIREM--PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQ 421 (589)
Q Consensus 345 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 421 (589)
.| |......++..+...|+.+++.++++.. ....|...|..+..++...|+.++|...+++..+.+|+|+.....
T Consensus 176 --~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~ 253 (280)
T PF13429_consen 176 --DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLA 253 (280)
T ss_dssp ---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccc
Confidence 56 4678889999999999999988888776 223456788999999999999999999999999999999999999
Q ss_pred HHHHhhhcCChHHHHHHHHHHh
Q 043490 422 MSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 422 l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
++.++...|+.++|.+++.+..
T Consensus 254 ~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 254 YADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHT----------------
T ss_pred cccccccccccccccccccccc
Confidence 9999999999999999988764
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=2e-10 Score=110.13 Aligned_cols=398 Identities=14% Similarity=0.127 Sum_probs=289.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCc-chHHHHHHHH
Q 043490 7 IYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--RNV-VSWTALISGY 83 (589)
Q Consensus 7 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~-~~~~~li~~~ 83 (589)
.|....+.--.++++..|+.+|+.++.... .+...|-..+.+=.++..+..|+.+|++... |-+ ..|--.+-.=
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~---r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDY---RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccc---ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 344444455566778888888888887533 5777788888888888888888888887542 222 2344444444
Q ss_pred HhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhh
Q 043490 84 AQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFEN 162 (589)
Q Consensus 84 ~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~ 162 (589)
-..|+...|.++|++-.. ..|+...|++.|++=.+ ..++.|+.++++
T Consensus 152 E~LgNi~gaRqiferW~~--------------------------------w~P~eqaW~sfI~fElRykeieraR~IYer 199 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWME--------------------------------WEPDEQAWLSFIKFELRYKEIERARSIYER 199 (677)
T ss_pred HHhcccHHHHHHHHHHHc--------------------------------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456778888888877654 48999999999999999 999999999998
Q ss_pred CC--CCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHhCcCcHHHHHHH
Q 043490 163 ME--FRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQRE-GM-APDWCTFSIVLKACAGLVTERHASAV 238 (589)
Q Consensus 163 m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~-g~-~p~~~t~~~ll~a~~~~~~~~~a~~i 238 (589)
.. .|++.+|--...-- .+.|....|..+|...... |- ..+...|.+...-=.+....+.|.-+
T Consensus 200 fV~~HP~v~~wikyarFE-------------~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~i 266 (677)
T KOG1915|consen 200 FVLVHPKVSNWIKYARFE-------------EKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFI 266 (677)
T ss_pred HheecccHHHHHHHHHHH-------------HhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 69999998777776 5666666666666655442 10 01122333333333466778899999
Q ss_pred HHHHHHhCCCCc--HHHHHHHHHHHHhcCCHHHHHHHH--------hhcCC---CChhHHHHHHHHHHHcCCHHHHHHHH
Q 043490 239 HSLIAKYGFEDD--TVIANALIHAYARCGSISLSKQVF--------DKMTY---HDLVSWNSILKAYALHGQAKEALQLF 305 (589)
Q Consensus 239 ~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 305 (589)
|..+++. ++.+ ...|..+...=-+-|+......+. +.+.. -|-.+|--.+..-...|+.+...++|
T Consensus 267 ykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~y 345 (677)
T KOG1915|consen 267 YKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETY 345 (677)
T ss_pred HHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHH
Confidence 9998876 3444 456666665555566654444332 22222 35568888888888889999999999
Q ss_pred HhC--CCCCCH-------HHHHHHHHHH---hccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHh----hcCCHHHH
Q 043490 306 SNM--NVQPDS-------ATFVSLLSAC---SHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLG----RVGRILEA 369 (589)
Q Consensus 306 ~~m--~~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~A 369 (589)
++. +++|-. ..|.-+=-+| ....+++.+.++|+..++ -++-...|+.-+--+|+ |+.++..|
T Consensus 346 ErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~A 423 (677)
T KOG1915|consen 346 ERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGA 423 (677)
T ss_pred HHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHH
Confidence 999 888833 2233222233 246899999999998864 33336677777766665 67899999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCc
Q 043490 370 EKLIREM-PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVR 448 (589)
Q Consensus 370 ~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 448 (589)
.+++... |.-|-..++...|..=.+.++++....++++.++..|.+-.+|.-.+..-...|+++.|..+|+........
T Consensus 424 RkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l 503 (677)
T KOG1915|consen 424 RKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPAL 503 (677)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc
Confidence 9999887 888999999999999999999999999999999999999999999999999999999999999988876654
Q ss_pred cCCceee
Q 043490 449 KYPGLSW 455 (589)
Q Consensus 449 ~~~~~s~ 455 (589)
-.|..-|
T Consensus 504 dmpellw 510 (677)
T KOG1915|consen 504 DMPELLW 510 (677)
T ss_pred ccHHHHH
Confidence 4555555
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=3.4e-11 Score=122.22 Aligned_cols=273 Identities=13% Similarity=0.091 Sum_probs=211.6
Q ss_pred hcCCHHHHHHHHhhCCCC--Ch-hHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHH
Q 043490 149 SKSCADEAWKVFENMEFR--NV-ISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFS--IVL 223 (589)
Q Consensus 149 ~~g~~~~A~~lf~~m~~~--~~-~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll 223 (589)
..|+++.|++.+...++. ++ ..|-...... .+.|++++|.+.|.++.+. .|+..... ...
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA-------------~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a 160 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAA-------------QQRGDEARANQHLERAAEL--ADNDQLPVEITRV 160 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHH-------------HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHH
Confidence 349999999999887653 22 2222223333 7889999999999999874 56654333 335
Q ss_pred HHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-----------hHHHHHHHHH
Q 043490 224 KACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDL-----------VSWNSILKAY 292 (589)
Q Consensus 224 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~ 292 (589)
..+...|+.+.|.+.++.+.+.. |.+..+...+...|.+.|++++|.+++..+.+... .+|..++...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999998887 77888999999999999999999999998874321 1344445545
Q ss_pred HHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHH
Q 043490 293 ALHGQAKEALQLFSNM--NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAE 370 (589)
Q Consensus 293 ~~~g~~~~A~~~~~~m--~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 370 (589)
....+.+...++++.. ..+.+......+..++...|+.++|.++++...+. .|+.. -.++.+....++.++++
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~--l~~l~~~l~~~~~~~al 314 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDER--LVLLIPRLKTNNPEQLE 314 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHH--HHHHHhhccCCChHHHH
Confidence 5556677788888888 44457778888999999999999999999888653 44432 12333444569999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 371 KLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 371 ~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
+..++. ...|+ .....++...|.+.+++++|...|+++.+..| +...+..|..++.+.|+.++|.+++++-.
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999888 44565 66788899999999999999999999999999 55778899999999999999999998654
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=1e-10 Score=110.77 Aligned_cols=344 Identities=15% Similarity=0.112 Sum_probs=216.0
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHhc-cCCCceeHHHHHHHhc------hhhH-HHHHHHHHHhcCCCchhHHHHH
Q 043490 73 VVSWTALISGYAQHGNAEECFRLFCSLLQY-FFPNEFSLASVLISCD------YLHG-KLVHALALKFSLDAHVYVANAL 144 (589)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~~l~a~~------~~~~-~~~~~~~~~~g~~~~~~~~~~l 144 (589)
+++=|.|+. ....|...++.-+|+.|... +......-..++.-.. ...+ ...+-.+.+.|-. +..+
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~s---- 189 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSS---- 189 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-cccc----
Confidence 445566665 45578899999999999987 3322222222222111 0000 0000011111100 0111
Q ss_pred HHHHhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043490 145 INMYSK-SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVL 223 (589)
Q Consensus 145 i~~y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 223 (589)
.| |.+.+ ++-+...++..++.+||.|. ++--..++|.+++++-.....+.+..+||.+|
T Consensus 190 ----WK~G~vAd---L~~E~~PKT~et~s~mI~Gl-------------~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI 249 (625)
T KOG4422|consen 190 ----WKSGAVAD---LLFETLPKTDETVSIMIAGL-------------CKFSSLERARELYKEHRAAKGKVYREAFNGLI 249 (625)
T ss_pred ----cccccHHH---HHHhhcCCCchhHHHHHHHH-------------HHHHhHHHHHHHHHHHHHhhheeeHHhhhhhh
Confidence 12 33333 44444455667888899998 77777888888888887777788888888888
Q ss_pred HHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHH----hhcC----CCChhHHHHHHHHHHHc
Q 043490 224 KACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVF----DKMT----YHDLVSWNSILKAYALH 295 (589)
Q Consensus 224 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~ 295 (589)
.+-+- ..++.+..+|+...+.||..|+|+++...++.|+++.|.+.+ .+|+ +|...+|..+|.-+++.
T Consensus 250 ~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 250 GASSY----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRE 325 (625)
T ss_pred hHHHh----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhccc
Confidence 77543 334778888888888888888888888888888877665444 4443 67888888888888887
Q ss_pred CCHHH-HHHHHHhC-----C--C---CC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC---CccC---cchHHHHH
Q 043490 296 GQAKE-ALQLFSNM-----N--V---QP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHG---VVPQ---LDHYACMV 357 (589)
Q Consensus 296 g~~~~-A~~~~~~m-----~--~---~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~---~~p~---~~~~~~li 357 (589)
++..+ |..+..++ | . .| |..-|...+..|.+..+.+.|.++...+....+ +.|+ ..-|..+.
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~ 405 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFF 405 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHH
Confidence 77644 33333333 2 2 23 445677888888888888888888766532211 1222 12356677
Q ss_pred HHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh---------------------cCC
Q 043490 358 DLLGRVGRILEAEKLIREM---PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQ---------------------LEP 413 (589)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---------------------~~p 413 (589)
.+.+....++.-+..++.| -.-|+..+...+++|....+.++..-+++..+.. ..|
T Consensus 406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp 485 (625)
T KOG4422|consen 406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHP 485 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCC
Confidence 7778888888888888888 2346667777777776666665554444433321 122
Q ss_pred C----------------------------------ChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 414 G----------------------------------DSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 414 ~----------------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
. .+......+-.+.+.|+.++|.+++.....++
T Consensus 486 ~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 486 LTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 1 12334556667889999999999999886444
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=7.7e-12 Score=125.09 Aligned_cols=275 Identities=14% Similarity=0.081 Sum_probs=217.6
Q ss_pred CHHHHHHHHhhCCC--CChh-HHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHH
Q 043490 152 CADEAWKVFENMEF--RNVI-SWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREG--MAPDWCTFSIVLKAC 226 (589)
Q Consensus 152 ~~~~A~~lf~~m~~--~~~~-~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~ 226 (589)
+..+|...|..+++ +|.. .-..+..+| ...+++++|.++|+...+.. ..-+...|+++|-.+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~Gray-------------FEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL 400 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAY-------------FELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL 400 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH
Confidence 35789999998764 4443 234456777 88999999999999988743 112567888887655
Q ss_pred hCcCcHHHHHHHH-HHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCCHHHHH
Q 043490 227 AGLVTERHASAVH-SLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYH---DLVSWNSILKAYALHGQAKEAL 302 (589)
Q Consensus 227 ~~~~~~~~a~~i~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 302 (589)
-+. .+...+ +.+++.. +..+.+|.++.+.|.-.++.+.|++.|++..+- ...+|+.+..-+.....+++|.
T Consensus 401 q~~----v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~ 475 (638)
T KOG1126|consen 401 QDE----VALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAM 475 (638)
T ss_pred Hhh----HHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHH
Confidence 332 222222 2233332 667899999999999999999999999998854 4568888888889999999999
Q ss_pred HHHHhC-CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 043490 303 QLFSNM-NVQPDS-ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PM 378 (589)
Q Consensus 303 ~~~~~m-~~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 378 (589)
..|+.. ++.|.. ..|..+.-.|.+.++++.|.-.|+..+ .+.| +......+...+-+.|+.|+|+++++++ .+
T Consensus 476 ~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 476 KSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL 552 (638)
T ss_pred HHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence 999999 888865 488889999999999999999999876 6677 5556777788899999999999999998 44
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCC
Q 043490 379 EP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRV 447 (589)
Q Consensus 379 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 447 (589)
.| |+..----...+...+++++|.+.++++.++-|++..+|..+...|-+.|+.+.|..-|.-+.+.+.
T Consensus 553 d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 553 DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 44 3444334556677789999999999999999999999999999999999999999998887766543
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.49 E-value=2.3e-09 Score=106.95 Aligned_cols=259 Identities=12% Similarity=0.058 Sum_probs=151.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSK 271 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 271 (589)
..+.++++|..+|.+.... .|+...|.--+..---++..++|.+++++.++. ++.-.-.|-.+...+-+.++++.|.
T Consensus 629 ~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred hccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHH
Confidence 3444555555555554442 233333333233333344555555555555543 2333444555555555555555555
Q ss_pred HHHhhcCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 043490 272 QVFDKMTY--H-DLVSWNSILKAYALHGQAKEALQLFSNM--NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGV 346 (589)
Q Consensus 272 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 346 (589)
..|..-.+ | .+..|-.+...--+.|..-+|..+|++. .-+-|..-|...|..=.+.|..++|..+..+.+++ .
T Consensus 706 ~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--c 783 (913)
T KOG0495|consen 706 EAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--C 783 (913)
T ss_pred HHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 55554431 2 2334554544445555555555555555 22224445555555555555555555555554442 2
Q ss_pred ccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHh
Q 043490 347 VPQLDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIY 426 (589)
Q Consensus 347 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 426 (589)
+.+...|..-|.+..+.++-....+.+++- +-|....-++...+....+++.|...|.+..+.+|++..+|..+...+
T Consensus 784 p~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfe 861 (913)
T KOG0495|consen 784 PSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFE 861 (913)
T ss_pred CccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHH
Confidence 233445555555555555544444444443 345566666777788888999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHhcCCCccCCceeeEEEC
Q 043490 427 CLSGSFNKARLIRKEMKGSRVRKYPGLSWIEIE 459 (589)
Q Consensus 427 ~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~ 459 (589)
...|.-++-.++++..... .|.-|..|..+.
T Consensus 862 l~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 862 LRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 9999999999999887653 345566787553
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.47 E-value=3.8e-09 Score=109.43 Aligned_cols=423 Identities=13% Similarity=0.119 Sum_probs=212.0
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHH
Q 043490 17 LHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEM---PKRNVVSWTALISGYAQHGNAEECF 93 (589)
Q Consensus 17 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~ 93 (589)
..|++++|..++.++++..| .+...|..|...|-..|+.+++...+-.. ...|..-|-.+-.-..+.|++++|.
T Consensus 151 arg~~eeA~~i~~EvIkqdp---~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDP---RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCc---cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 34888888888888888766 77788888888888888888877655432 2335566766666666666677766
Q ss_pred HHHHHHHhccCCCceeH----HHHHHHhc-hhhHHHHHHHHHHhcCCCchhHHHH----HHHHHhc-CCHHHHHHHHhhC
Q 043490 94 RLFCSLLQYFFPNEFSL----ASVLISCD-YLHGKLVHALALKFSLDAHVYVANA----LINMYSK-SCADEAWKVFENM 163 (589)
Q Consensus 94 ~~~~~m~~~~~p~~~t~----~~~l~a~~-~~~~~~~~~~~~~~g~~~~~~~~~~----li~~y~~-g~~~~A~~lf~~m 163 (589)
-.|.+..+. .|+..-+ ..+..-.. ...+..-+..+.....+.|..-... .+..|.. ++-+.|.+.++.-
T Consensus 228 ~cy~rAI~~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQA-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhc-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666554 2222111 11111111 1122222222222211111111111 1222223 3334444444433
Q ss_pred CC-----CChhHHHHHHHHHHcCCcHHHHHHHH-----------------------------------------------
Q 043490 164 EF-----RNVISWNSMIAAFRACKLEAQAIELF----------------------------------------------- 191 (589)
Q Consensus 164 ~~-----~~~~~~~~li~~~~~~g~~~~a~~~~----------------------------------------------- 191 (589)
.. -+...+|.++..|.+...++.|....
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 21 12223334444443333333333221
Q ss_pred -HHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHH
Q 043490 192 -AKMKNEEEALFLFRQLQREGM--APDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSIS 268 (589)
Q Consensus 192 -~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 268 (589)
......+....+..-+....+ .-+...|.-+..++.+.|.+..|..++..+.....--+..+|-.+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 111111112222222223332 22334555566666666666666666666665544444556666666666666666
Q ss_pred HHHHHHhhcCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHhccCcHHHHH
Q 043490 269 LSKQVFDKMTY--H-DLVSWNSILKAYALHGQAKEALQLFSNM-----------NVQPDSATFVSLLSACSHAGLVQEGN 334 (589)
Q Consensus 269 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-----------~~~p~~~t~~~ll~a~~~~g~~~~a~ 334 (589)
.|...|+.+.. | +...--+|...+-+.|+.++|++.++.+ +..|+..........+.+.|+.++=.
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 66666666552 2 2233344445566666666666666665 12222222222333333444433322
Q ss_pred HHHHHhHH--------------------------------------------------------------hcCCccC--c
Q 043490 335 KVFHSMLE--------------------------------------------------------------NHGVVPQ--L 350 (589)
Q Consensus 335 ~~~~~~~~--------------------------------------------------------------~~~~~p~--~ 350 (589)
.+-..|+. ..++.-+ -
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 21111100 0011110 0
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhC----C-CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhc-----CCCChh
Q 043490 351 DHYACMVDLLGRVGRILEAEKLIREM----P-MEPDS---VIWSVLLGSCRKHGETRLAELAATKLKQL-----EPGDSL 417 (589)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m----~-~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~ 417 (589)
..+.-++..+++.+++++|+.+...+ . ..++. ..-...+.++...+++..|....+.++.. +|--..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 13445667788888999999888776 1 12221 12244566777888899998888888765 554455
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 418 GFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 418 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
.|+...+...+.|+-..-.+.+....
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~ 732 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLL 732 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56656666666666544444444433
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.46 E-value=4.4e-11 Score=121.34 Aligned_cols=280 Identities=11% Similarity=0.046 Sum_probs=171.1
Q ss_pred cCChHHHHHHHhcCCCC--Ccc-hHHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHH
Q 043490 55 FGYLDDARHLFDEMPKR--NVV-SWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALK 131 (589)
Q Consensus 55 ~g~~~~A~~~f~~m~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~ 131 (589)
.|+++.|++.+...++. ++. .|-....+..+.|+++.|...|.++.+.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~----------------------------- 147 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL----------------------------- 147 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----------------------------
Confidence 58999999988876653 222 2333334447889999999999998764
Q ss_pred hcCCCchhHHH--HHHHHHhc-CCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHH
Q 043490 132 FSLDAHVYVAN--ALINMYSK-SCADEAWKVFENMEF--R-NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFR 205 (589)
Q Consensus 132 ~g~~~~~~~~~--~li~~y~~-g~~~~A~~lf~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~ 205 (589)
.|+..... .....+.. |+++.|...+++..+ | +......+...| .+.|++++|.+++.
T Consensus 148 ---~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~-------------~~~gdw~~a~~~l~ 211 (398)
T PRK10747 148 ---ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAY-------------IRTGAWSSLLDILP 211 (398)
T ss_pred ---CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-------------HHHHhHHHHHHHHH
Confidence 34433222 23556777 999999999998864 3 566677788888 88899999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCh
Q 043490 206 QLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDL 282 (589)
Q Consensus 206 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~ 282 (589)
++.+.+..++. .+..+-. .+|..++....+..+.+...++++.++ ..++
T Consensus 212 ~l~k~~~~~~~-~~~~l~~---------------------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~ 263 (398)
T PRK10747 212 SMAKAHVGDEE-HRAMLEQ---------------------------QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQV 263 (398)
T ss_pred HHHHcCCCCHH-HHHHHHH---------------------------HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCH
Confidence 99887644322 1110000 011111111122223344444444443 2345
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHh
Q 043490 283 VSWNSILKAYALHGQAKEALQLFSNM-NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLG 361 (589)
Q Consensus 283 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 361 (589)
.....+..++...|+.++|.+.+++. ...||.... ++.+....++.+++.+..+...+++ +-|...+.++...+.
T Consensus 264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~ 339 (398)
T PRK10747 264 ALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLM 339 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHH
Confidence 55555666666666666666666666 544444211 2223334466677777666665432 223445666667777
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 043490 362 RVGRILEAEKLIREM-PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQL 411 (589)
Q Consensus 362 ~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 411 (589)
+.|++++|.+.|+.. ...|+...+..+...+.+.|+.++|.+.+++...+
T Consensus 340 ~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777777777777766 55677777777777777777777777777776553
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=6.1e-10 Score=107.42 Aligned_cols=400 Identities=14% Similarity=0.060 Sum_probs=254.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc---chHHHHHHHHH
Q 043490 8 YATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNV---VSWTALISGYA 84 (589)
Q Consensus 8 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~ 84 (589)
+-..-+-|-+.|.+++|.+.+.+.++..| ..+..|......|...|++++..+---+..+-|+ -.+..-.+++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p---~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCP---DEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCC---CCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34455667788999999999999997633 3388899999999999999988776555544332 35555567777
Q ss_pred hCCChhHHHHHHHHHHhccCCCceeHHHHHHHhc------------hhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc--
Q 043490 85 QHGNAEECFRLFCSLLQYFFPNEFSLASVLISCD------------YLHGKLVHALALKFSLDAHVYVANALINMYSK-- 150 (589)
Q Consensus 85 ~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~------------~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-- 150 (589)
+.|++++|+.=. |..+++..+. -..|+.....-.+..-+|...+- ..|..|..
T Consensus 195 ~lg~~~eal~D~------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~-~fi~syf~sF 261 (606)
T KOG0547|consen 195 QLGKFDEALFDV------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSA-TFIASYFGSF 261 (606)
T ss_pred hhccHHHHHHhh------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcH-HHHHHHHhhc
Confidence 788888775422 2222222221 11222222222221112222211 12222211
Q ss_pred -CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHH-HH-cCCHHHHHHHHHHHHHcC-CCC-----CHH----
Q 043490 151 -SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELF-AK-MKNEEEALFLFRQLQREG-MAP-----DWC---- 217 (589)
Q Consensus 151 -g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~-~~-~g~~~~A~~~~~~m~~~g-~~p-----~~~---- 217 (589)
.++.. .+..+...+...+..++ +.+ .. ...+.+|.+.+.+-.... ..+ |..
T Consensus 262 ~~~~~~------~~~~~~~ksDa~l~~~l----------~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~ 325 (606)
T KOG0547|consen 262 HADPKP------LFDNKSDKSDAALAEAL----------EALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYM 325 (606)
T ss_pred cccccc------cccCCCccchhhHHHHH----------HHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHH
Confidence 00000 00001111222222221 110 00 112333333332211100 011 111
Q ss_pred HHHHHHH--HHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHH
Q 043490 218 TFSIVLK--ACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAY 292 (589)
Q Consensus 218 t~~~ll~--a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 292 (589)
.-..++. -+.-.|+.-.+.+-++..++.. +.+...|--+..+|....+.++..+.|+... ..|..+|..-...+
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR 404 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence 1111111 1234578888888888888875 3344447777788999999999999999876 34667787777788
Q ss_pred HHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHH
Q 043490 293 ALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAE 370 (589)
Q Consensus 293 ~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 370 (589)
.-.+++++|..=|++. .+.|+ ...|..+-.+.-+.+.++++...|++..+++ +.-+++|+.....+...+++++|.
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHH
Confidence 8888999999999999 88885 4688888888888999999999999997754 556789999999999999999999
Q ss_pred HHHHhC-CCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHH
Q 043490 371 KLIREM-PMEPD---------SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRK 440 (589)
Q Consensus 371 ~~~~~m-~~~p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 440 (589)
+.|+.. .++|+ +.+-.+++-.- -.+++..|..+++++.+++|....+|..|...-.+.|+.++|+++|+
T Consensus 483 k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 483 KQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred HHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999887 44443 22222222222 23899999999999999999999999999999999999999999998
Q ss_pred HHh
Q 043490 441 EMK 443 (589)
Q Consensus 441 ~m~ 443 (589)
+-.
T Consensus 562 ksa 564 (606)
T KOG0547|consen 562 KSA 564 (606)
T ss_pred HHH
Confidence 754
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=1e-11 Score=124.15 Aligned_cols=243 Identities=19% Similarity=0.180 Sum_probs=198.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhcCCHH-HHHH
Q 043490 196 NEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYG--FEDDTVIANALIHAYARCGSIS-LSKQ 272 (589)
Q Consensus 196 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~-~A~~ 272 (589)
+.++|+..|.+.... +.-+......+..+|...++.++++.+|+.+.+.. ...+..+|++.+--+-+.-.+. .|..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 567899999985543 44455778888999999999999999999998764 2335667777654333322221 1222
Q ss_pred HHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCc
Q 043490 273 VFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQL 350 (589)
Q Consensus 273 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 350 (589)
+.+. .+..+.+|.++..+|.-+++.+.|++.|++. .+.| ...+|+.+..-+.....+|.|...|+..+ ..|.
T Consensus 413 Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~ 486 (638)
T KOG1126|consen 413 LIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDP 486 (638)
T ss_pred HHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCc
Confidence 2222 2456789999999999999999999999999 9999 67899988888888999999999998764 4566
Q ss_pred chHHHH---HHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 043490 351 DHYACM---VDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNI 425 (589)
Q Consensus 351 ~~~~~l---i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 425 (589)
.+|+++ .-.|.+.++++.|+-.|+++ .+.|. .+....+...+.+.|+.++|+++++++..++|.|+..-...+..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 677764 56799999999999999999 77885 77778888899999999999999999999999999999999999
Q ss_pred hhhcCChHHHHHHHHHHhcC
Q 043490 426 YCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 426 ~~~~g~~~~a~~~~~~m~~~ 445 (589)
+...+++++|...++++++-
T Consensus 567 l~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHhhcchHHHHHHHHHHHHh
Confidence 99999999999999999863
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.44 E-value=2.4e-10 Score=118.13 Aligned_cols=357 Identities=17% Similarity=0.167 Sum_probs=240.0
Q ss_pred HHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHH
Q 043490 50 NMYAKFGYLDDARHLFDEMPK---RNVVSWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVH 126 (589)
Q Consensus 50 ~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~ 126 (589)
+.+.-.|++++|.+++.++.+ .+...|-+|...|-+.|+.++++..+--.-. .
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH-L----------------------- 202 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH-L----------------------- 202 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh-c-----------------------
Confidence 334445999999999998875 3667899999999999999988876532221 1
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHH
Q 043490 127 ALALKFSLDAHVYVANALINMYSK-SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFR 205 (589)
Q Consensus 127 ~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~ 205 (589)
.+.|...|-.+-....+ |.++.|.-.|.+..+.++.-|-.+..- ..+|.+.|+...|++-|.
T Consensus 203 -------~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~er----------s~L~~~~G~~~~Am~~f~ 265 (895)
T KOG2076|consen 203 -------NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYER----------SSLYQKTGDLKRAMETFL 265 (895)
T ss_pred -------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHH----------HHHHHHhChHHHHHHHHH
Confidence 23455677777777788 999999999998876444444433211 123388999999999999
Q ss_pred HHHHcCCCCCHH----HHHHHHHHHhCcCcHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC--
Q 043490 206 QLQREGMAPDWC----TFSIVLKACAGLVTERHASAVHSLIAKY-GFEDDTVIANALIHAYARCGSISLSKQVFDKMT-- 278 (589)
Q Consensus 206 ~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 278 (589)
++.+...+.|.. +.-.++..+...++-+.|.+.+...... +-..+...++.++.+|.+...++.|......+.
T Consensus 266 ~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r 345 (895)
T KOG2076|consen 266 QLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNR 345 (895)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcc
Confidence 998864322222 2333455566666667777777766653 224455667788888888888888877766554
Q ss_pred --CCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc--Ccch
Q 043490 279 --YHDLVSWNSILKAYALHGQAKEALQLFSNM--NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP--QLDH 352 (589)
Q Consensus 279 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~ 352 (589)
++|..-|.+- ..++ .-...+... ++.++...+. +.-++.+....+...-+.....+ ..+.| +...
T Consensus 346 ~~e~d~~e~~~~-----~~~~--~~~~~~~~~~~~~s~~l~v~r-l~icL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL 416 (895)
T KOG2076|consen 346 ESEKDDSEWDTD-----ERRR--EEPNALCEVGKELSYDLRVIR-LMICLVHLKERELLEALLHFLVE-DNVWVSDDVDL 416 (895)
T ss_pred ccCCChhhhhhh-----hhcc--ccccccccCCCCCCccchhHh-HhhhhhcccccchHHHHHHHHHH-hcCChhhhHHH
Confidence 2333222110 0000 000011111 3334433311 22233344444433333333333 24333 5678
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhc
Q 043490 353 YACMVDLLGRVGRILEAEKLIREM---PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLS 429 (589)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 429 (589)
|.-+.++|...|++.+|+.+|..+ +...+...|--+..+|...|.++.|.+.+++++.+.|++..+-..|...|.+.
T Consensus 417 ~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~ 496 (895)
T KOG2076|consen 417 YLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQL 496 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhc
Confidence 999999999999999999999998 22235789999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCccCCceeeE
Q 043490 430 GSFNKARLIRKEMKGSRVRKYPGLSWI 456 (589)
Q Consensus 430 g~~~~a~~~~~~m~~~~~~~~~~~s~~ 456 (589)
|+.++|.+++..|..-+-...+++.|-
T Consensus 497 g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 497 GNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred CCHHHHHHHHhcccCCCccchhhcccc
Confidence 999999999998874333333455553
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=6.4e-10 Score=106.64 Aligned_cols=245 Identities=13% Similarity=0.120 Sum_probs=163.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCC-C-CCHHHHHHHHHHHhCcCcHH-HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHH
Q 043490 192 AKMKNEEEALFLFRQLQREGM-A-PDWCTFSIVLKACAGLVTER-HASAVHSLIAKYGFEDDTVIANALIHAYARCGSIS 268 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~-~-p~~~t~~~ll~a~~~~~~~~-~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 268 (589)
-...++++|+.+|+++.+... + -|..||+.+|-.-.....+. .|..++. + . +-.+.|+..+.+-|+-.++.+
T Consensus 273 y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-i--d--KyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 273 YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-I--D--KYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-h--c--cCCccceeeehhHHHHHHhHH
Confidence 455677777777777776531 1 25567777765543222211 1111111 1 1 223456667777777788888
Q ss_pred HHHHHHhhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 043490 269 LSKQVFDKMTY---HDLVSWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLEN 343 (589)
Q Consensus 269 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 343 (589)
+|...|++..+ .....|+.|..-|....+...|++.|++. .+.| |...|-.|.++|.-.+.+.-|.-+|++..
T Consensus 348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~-- 425 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL-- 425 (559)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH--
Confidence 88888887763 34467888888888888888888888888 6666 56688888888888888888888887764
Q ss_pred cCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-------cCC
Q 043490 344 HGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM--PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQ-------LEP 413 (589)
Q Consensus 344 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p 413 (589)
.++| |...|.+|.+.|.+.+++++|++-|.+. .-..+...+..|...|-+.++.++|.+.+++-++ .+|
T Consensus 426 -~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~ 504 (559)
T KOG1155|consen 426 -ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD 504 (559)
T ss_pred -hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch
Confidence 4455 6678888888888888888888888777 1123457777788888888888888888877665 222
Q ss_pred CChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 414 GDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 414 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
....+-.-|..-+.+.+++++|.........
T Consensus 505 ~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 505 ETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 2233344566777777888777765554443
No 42
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=9.2e-11 Score=120.45 Aligned_cols=422 Identities=14% Similarity=0.105 Sum_probs=258.3
Q ss_pred CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHh-CCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHH
Q 043490 2 LHSTQIYATLFHACALHGNIKQAMQLHEHMINN-FPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALI 80 (589)
Q Consensus 2 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li 80 (589)
.|+..||..++..|+..|+.+.|- +|..|.-. .| .+..+++.++......++.+.+. +|...+|+.|+
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLp---v~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll 90 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLP---VREGVFRGLVASHKEANDAENPK-------EPLADTYTNLL 90 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhccccc---ccchhHHHHHhcccccccccCCC-------CCchhHHHHHH
Confidence 589999999999999999999988 99999887 66 88889999999999999887765 78889999999
Q ss_pred HHHHhCCChhH---HHHHHHHHHhccCCCc-----eeHHHHHHHhc-----------hhhHHHHHHHHHHhcCCCchhHH
Q 043490 81 SGYAQHGNAEE---CFRLFCSLLQYFFPNE-----FSLASVLISCD-----------YLHGKLVHALALKFSLDAHVYVA 141 (589)
Q Consensus 81 ~~~~~~g~~~~---A~~~~~~m~~~~~p~~-----~t~~~~l~a~~-----------~~~~~~~~~~~~~~g~~~~~~~~ 141 (589)
.+|.+.|+... ..+.+.....+..|.. .-|...+..|. ...-+.+++..++.+....+..+
T Consensus 91 ~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~ 170 (1088)
T KOG4318|consen 91 KAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAW 170 (1088)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Confidence 99999999654 3332333332211111 11111112121 22223334444444311111111
Q ss_pred HH----HHHHHhc--CCHHHHHHHHhhCCC-CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 043490 142 NA----LINMYSK--SCADEAWKVFENMEF-RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAP 214 (589)
Q Consensus 142 ~~----li~~y~~--g~~~~A~~lf~~m~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p 214 (589)
+. ++.-... ..+++-........+ ++..++.+.+..- ..+|+.+.|..++.+|.+.|++.
T Consensus 171 ~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~a-------------laag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 171 NAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRA-------------LAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred cchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHH-------------HhcCchhhHHHHHHHHHHcCCCc
Confidence 10 1111111 223333333333333 7777888887777 88899999999999999999998
Q ss_pred CHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHH-----------------------
Q 043490 215 DWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSK----------------------- 271 (589)
Q Consensus 215 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~----------------------- 271 (589)
+.+-|..+|-+ .++...+..+.+-|...|+.|+..|+.--+-...++|....+.
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a 314 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLA 314 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHh
Confidence 88887777755 7888888999999999999999888876665555544322111
Q ss_pred -HHHhhc---------C-------CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCC-HHHHHHHHHHH----
Q 043490 272 -QVFDKM---------T-------YHDLVSWNSILKAYALHGQAKEALQLFSNM-----NVQPD-SATFVSLLSAC---- 324 (589)
Q Consensus 272 -~~~~~~---------~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~-~~t~~~ll~a~---- 324 (589)
+.+++- + .....+|...+. ....|..++...+-..| ...|+ ...|..++.-|
T Consensus 315 ~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~ 393 (1088)
T KOG4318|consen 315 NKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRI 393 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHH
Confidence 111110 0 011123332222 22245555555554444 12221 11222222111
Q ss_pred ----------------------------------------------------------------------------hccC
Q 043490 325 ----------------------------------------------------------------------------SHAG 328 (589)
Q Consensus 325 ----------------------------------------------------------------------------~~~g 328 (589)
+..-
T Consensus 394 e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~ 473 (1088)
T KOG4318|consen 394 ERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEY 473 (1088)
T ss_pred HhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 1111
Q ss_pred cHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043490 329 LVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMP-----MEPDSVIWSVLLGSCRKHGETRLAEL 403 (589)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~~~~~~g~~~~a~~ 403 (589)
+..++...-+.. +. ..=...|..||+.+......++|..+.++.. +.-|..-+..+.....+.+....+..
T Consensus 474 n~lK~l~~~eky-e~---~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 474 NKLKILCDEEKY-ED---LLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHHH-HH---HHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 111111111110 10 0112457888888888888999998888872 23355567788888889998999988
Q ss_pred HHHHHhhcC---CCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCccCCceeeE
Q 043490 404 AATKLKQLE---PGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVRKYPGLSWI 456 (589)
Q Consensus 404 ~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 456 (589)
+++.+.+.- |.-..+...+.+.-+..|+.+...++++-+...|+.- .+--|.
T Consensus 550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~~ 604 (1088)
T KOG4318|consen 550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLWM 604 (1088)
T ss_pred HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccceE
Confidence 888887632 3334556678888889999999999999999888865 344453
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.43 E-value=5.1e-10 Score=114.24 Aligned_cols=249 Identities=12% Similarity=0.012 Sum_probs=123.7
Q ss_pred HHHhc-CCHHHHHHHHhhCCC--CCh--hHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043490 146 NMYSK-SCADEAWKVFENMEF--RNV--ISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFS 220 (589)
Q Consensus 146 ~~y~~-g~~~~A~~lf~~m~~--~~~--~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 220 (589)
..+.+ |+.+.|...|.+..+ |+. ...-.....+ .+.|++++|.+.++++.+.. +-+...+.
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~-------------l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ 191 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL-------------LAQNELHAARHGVDKLLEMA-PRHKEVLK 191 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH-------------HHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 44555 777777777776532 222 1222223334 66777777777777777754 22445666
Q ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH---H----hcCCHHHHHHHHhhcCC---CChhHHHHHHH
Q 043490 221 IVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAY---A----RCGSISLSKQVFDKMTY---HDLVSWNSILK 290 (589)
Q Consensus 221 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~---~----~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 290 (589)
.+...+...|+++.+.+.+..+.+.+..+.......-...+ . .....+...+.++..+. .+...+..+..
T Consensus 192 ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~ 271 (409)
T TIGR00540 192 LAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAE 271 (409)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHH
Confidence 77777777777777777777777776433222211111111 1 11222333444444442 35566666666
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCCHHHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCH
Q 043490 291 AYALHGQAKEALQLFSNM-NVQPDSATF---VSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRI 366 (589)
Q Consensus 291 ~~~~~g~~~~A~~~~~~m-~~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 366 (589)
.+...|+.++|.+.+++. ...||.... ..........++.+.+.+.++...+...-.|+.....++...+.+.|++
T Consensus 272 ~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~ 351 (409)
T TIGR00540 272 HLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEF 351 (409)
T ss_pred HHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccH
Confidence 666666666666666666 545544321 1111111223444555555544433221111112333444444445555
Q ss_pred HHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043490 367 LEAEKLIRE--M-PMEPDSVIWSVLLGSCRKHGETRLAELAATKL 408 (589)
Q Consensus 367 ~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 408 (589)
++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.
T Consensus 352 ~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 352 IEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555554442 1 33444444444444444444444444444443
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=4.3e-10 Score=114.79 Aligned_cols=273 Identities=14% Similarity=0.030 Sum_probs=198.1
Q ss_pred CCHHHHHHHHhhCCC--CCh-hHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHH
Q 043490 151 SCADEAWKVFENMEF--RNV-ISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDW--CTFSIVLKA 225 (589)
Q Consensus 151 g~~~~A~~lf~~m~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a 225 (589)
|+++.|++.+.+..+ |+. ..+-....++ .+.|++++|.+.+.+..+.. |+. ..-......
T Consensus 98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa-------------~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l 162 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAA-------------QQRGDEARANQHLEEAAELA--GNDNILVEIARTRI 162 (409)
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH-------------HHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHH
Confidence 999999999988764 332 2233333445 78899999999999987643 443 233334667
Q ss_pred HhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHH----HHHHHHHHcCCH
Q 043490 226 CAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYH---DLVSWN----SILKAYALHGQA 298 (589)
Q Consensus 226 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~ 298 (589)
+...|+.+.|.+.++.+.+.. |.+..+...+...|...|++++|.+.+....+. +...+. ....++...+..
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999987 677888999999999999999999999988743 332231 111222333333
Q ss_pred HHHHHHHHhC-CCCC-----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchH-HHHHHHH--hhcCCHHHH
Q 043490 299 KEALQLFSNM-NVQP-----DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHY-ACMVDLL--GRVGRILEA 369 (589)
Q Consensus 299 ~~A~~~~~~m-~~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~--~~~g~~~~A 369 (589)
+++.+.+.++ ...| +...+..+...+...|+.++|.+.++...++ .||.... ..++..+ ...++.+.+
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHH
Confidence 3334444444 2233 6778888889999999999999999998764 4544321 0123322 345788888
Q ss_pred HHHHHhC-CCCCC-H--HHHHHHHHHHHHcCCHHHHHHHHH--HHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 370 EKLIREM-PMEPD-S--VIWSVLLGSCRKHGETRLAELAAT--KLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 370 ~~~~~~m-~~~p~-~--~~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
.+.+++. ...|+ . ....++...|.+.|++++|.+.|+ ...+..| ++..+..++..+.+.|+.++|.+++++-.
T Consensus 319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888777 33454 4 667789999999999999999999 4666777 55668899999999999999999998753
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.2e-09 Score=104.90 Aligned_cols=308 Identities=13% Similarity=0.118 Sum_probs=214.0
Q ss_pred cCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHH-------------------HHHH
Q 043490 133 SLDAHVYVANALINMYSK-SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAI-------------------ELFA 192 (589)
Q Consensus 133 g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~-------------------~~~~ 192 (589)
+...|.+..-..--.+-+ |....|.+.|......-+.-|.+.+.-.--..+.+.+. .++.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 344554444433344555 77788888887765433333333222111111111110 1123
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhcCCHH-H
Q 043490 193 KMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGF--EDDTVIANALIHAYARCGSIS-L 269 (589)
Q Consensus 193 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~-~ 269 (589)
.....+++++-.......|++-+...-+....+.-...|+++|+.+|+++.+... -.|..+|+.++-.--.+.++. .
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 3345666666666667766654444444444444667788888888888887631 124566665543322222222 2
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCc
Q 043490 270 SKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDS-ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVV 347 (589)
Q Consensus 270 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 347 (589)
|..+++ +.+--+.|...+..-|+-.++.++|...|++. .+.|.. ..|+.+..-|...++...|.+-++..+ .+.
T Consensus 319 A~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~ 394 (559)
T KOG1155|consen 319 AQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DIN 394 (559)
T ss_pred HHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcC
Confidence 222222 22334456666777788899999999999999 888875 467777889999999999999999887 455
Q ss_pred c-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 043490 348 P-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSN 424 (589)
Q Consensus 348 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 424 (589)
| |-..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|...|.+.++.++|++-|.++...+-.+...+..|++
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 5 7778999999999999999999999999 6777 59999999999999999999999999999988767899999999
Q ss_pred HhhhcCChHHHHHHHHHHhc
Q 043490 425 IYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 425 ~~~~~g~~~~a~~~~~~m~~ 444 (589)
+|-+.++.++|.+.+++-.+
T Consensus 475 Lye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999987765
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=1.3e-08 Score=98.04 Aligned_cols=414 Identities=11% Similarity=0.114 Sum_probs=286.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC--CCCcchHHHHHHHHH
Q 043490 7 IYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMP--KRNVVSWTALISGYA 84 (589)
Q Consensus 7 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~ 84 (589)
.|...+..-.+...+..|+.+++..+..+| .--..|-..+.+=-..|++..|+++|++-. +|+..+|++.|..=.
T Consensus 109 LWlkYae~Emknk~vNhARNv~dRAvt~lP---RVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fEl 185 (677)
T KOG1915|consen 109 LWLKYAEFEMKNKQVNHARNVWDRAVTILP---RVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFEL 185 (677)
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 445556677788899999999999998866 556677778888888999999999999854 699999999999999
Q ss_pred hCCChhHHHHHHHHHHhccCCCceeHHHHHHHh---c-hhhHHHHHHHHHHh-cC-CCchhHHHHHHHHHhc-CCHHHHH
Q 043490 85 QHGNAEECFRLFCSLLQYFFPNEFSLASVLISC---D-YLHGKLVHALALKF-SL-DAHVYVANALINMYSK-SCADEAW 157 (589)
Q Consensus 85 ~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~---~-~~~~~~~~~~~~~~-g~-~~~~~~~~~li~~y~~-g~~~~A~ 157 (589)
+...++.|..+|++.+- +.|+..+|.--.+-- + ...++.++..++.. |- ..+...++++...=.+ ..++.|+
T Consensus 186 RykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar 264 (677)
T KOG1915|consen 186 RYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERAR 264 (677)
T ss_pred HhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998765 357776665443321 1 55566666665533 11 1112233333333333 4556666
Q ss_pred HHHhh----CCC-CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHH--------HHHHHHHcCCCCCHHHHHHHHH
Q 043490 158 KVFEN----MEF-RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALF--------LFRQLQREGMAPDWCTFSIVLK 224 (589)
Q Consensus 158 ~lf~~----m~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~--------~~~~m~~~g~~p~~~t~~~ll~ 224 (589)
-+|.- ++. +....|.....-- -+.|+-....+ -|+++.+.+ +-|-.+|--.+.
T Consensus 265 ~iykyAld~~pk~raeeL~k~~~~fE-------------KqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylr 330 (677)
T KOG1915|consen 265 FIYKYALDHIPKGRAEELYKKYTAFE-------------KQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLR 330 (677)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHH-------------HHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHH
Confidence 66543 332 1223333333333 23343322221 133444432 456677777788
Q ss_pred HHhCcCcHHHHHHHHHHHHHhCCCCcH-------HHHHHHH---HHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHH
Q 043490 225 ACAGLVTERHASAVHSLIAKYGFEDDT-------VIANALI---HAYARCGSISLSKQVFDKMT---YHDLVSWNSILKA 291 (589)
Q Consensus 225 a~~~~~~~~~a~~i~~~~~~~g~~~~~-------~~~~~li---~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 291 (589)
.-...|+.+...++++.++.. ++|-. .+|.-+= -.=....+.+.+.++|+... .....|+.-+--.
T Consensus 331 L~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlm 409 (677)
T KOG1915|consen 331 LEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLM 409 (677)
T ss_pred HHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 888889999999999999876 35521 1222111 11134578888999987765 3344455444333
Q ss_pred ----HHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCC
Q 043490 292 ----YALHGQAKEALQLFSNM-NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGR 365 (589)
Q Consensus 292 ----~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 365 (589)
-.++.+...|.+++-.. |.-|-..+|-..|..=.+.+.+|.+.++++..++ ..| +..+|......=...|+
T Consensus 410 yA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle---~~Pe~c~~W~kyaElE~~Lgd 486 (677)
T KOG1915|consen 410 YAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE---FSPENCYAWSKYAELETSLGD 486 (677)
T ss_pred HHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh---cChHhhHHHHHHHHHHHHhhh
Confidence 44678899999999999 9999999999999999999999999999998864 345 66677777777788999
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhh-----hcC------
Q 043490 366 ILEAEKLIREMPMEPD----SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYC-----LSG------ 430 (589)
Q Consensus 366 ~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g------ 430 (589)
.+.|..+|.-.--+|. ...|.+.|.-=...|.++.|..+++++++..+ ...+|.+.+.--. +.|
T Consensus 487 tdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~-h~kvWisFA~fe~s~~~~~~~~~~~~~ 565 (677)
T KOG1915|consen 487 TDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ-HVKVWISFAKFEASASEGQEDEDLAEL 565 (677)
T ss_pred HHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc-cchHHHhHHHHhccccccccccchhhh
Confidence 9999999998732442 56788888888889999999999999999887 3347777666544 344
Q ss_pred -----ChHHHHHHHHHHh
Q 043490 431 -----SFNKARLIRKEMK 443 (589)
Q Consensus 431 -----~~~~a~~~~~~m~ 443 (589)
+...|.++|++..
T Consensus 566 e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 566 EITDENIKRARKIFERAN 583 (677)
T ss_pred hcchhHHHHHHHHHHHHH
Confidence 5667888887764
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.39 E-value=1.8e-12 Score=125.56 Aligned_cols=249 Identities=18% Similarity=0.192 Sum_probs=105.0
Q ss_pred HHHHHHHhcCChHHHHHHHhcC-CC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhh
Q 043490 47 HLINMYAKFGYLDDARHLFDEM-PK----RNVVSWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLH 121 (589)
Q Consensus 47 ~li~~~~~~g~~~~A~~~f~~m-~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~ 121 (589)
.+..++.+.|++++|.+++++. .. .|...|..+.......+++++|+..|+++...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~------------------- 73 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS------------------- 73 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------------
Confidence 5577788888888888888532 22 24555666666666778888888888888654
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCC--CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHH
Q 043490 122 GKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFENMEF--RNVISWNSMIAAFRACKLEAQAIELFAKMKNEE 198 (589)
Q Consensus 122 ~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~ 198 (589)
-+.+...+..++.. .. +++++|.++++..-+ ++...+..++..+ .+.++++
T Consensus 74 ------------~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~-------------~~~~~~~ 127 (280)
T PF13429_consen 74 ------------DKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLY-------------YRLGDYD 127 (280)
T ss_dssp ---------------------------------------------------------H-H-------------HHTT-HH
T ss_pred ------------cccccccccccccc-cccccccccccccccccccccccchhhHHHHHH-------------HHHhHHH
Confidence 01133345556666 45 888888888776533 4566677777777 8888888
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 043490 199 EALFLFRQLQREG-MAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKM 277 (589)
Q Consensus 199 ~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 277 (589)
++.+++++..... .+++...|..+...+.+.|+.+.|...++..++.. |.|..+.+.++..+...|+.+++.+++...
T Consensus 128 ~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~ 206 (280)
T PF13429_consen 128 EAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRL 206 (280)
T ss_dssp HHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 8888888876533 34566777788888889999999999999998886 557888888999999999999877777665
Q ss_pred C---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043490 278 T---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSML 341 (589)
Q Consensus 278 ~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 341 (589)
. ..|...|..+..+|...|+.++|+..|++. ...| |......+..++...|+.++|.++.....
T Consensus 207 ~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 207 LKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4 457778889999999999999999999999 6556 66778888889999999999999887664
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=6.3e-09 Score=102.46 Aligned_cols=425 Identities=15% Similarity=0.101 Sum_probs=280.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHh--cCCCCCcchHHHHHHHHH
Q 043490 7 IYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFD--EMPKRNVVSWTALISGYA 84 (589)
Q Consensus 7 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~--~m~~~~~~~~~~li~~~~ 84 (589)
-+..+++-+..+.++..|+-+-+.+... ..|+..---+..+|.-.|+.+.|..+.. .+.+.|..+.......+.
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l----~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~ 93 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGL----TNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLV 93 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhc----cCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 3445556666666677776666666543 2444444557778888888888877765 455678888888888899
Q ss_pred hCCChhHHHHHHHH----HHhc----------cCCCcee----HHHHHHHhc-----------hhhHHHHHHHHHHhcCC
Q 043490 85 QHGNAEECFRLFCS----LLQY----------FFPNEFS----LASVLISCD-----------YLHGKLVHALALKFSLD 135 (589)
Q Consensus 85 ~~g~~~~A~~~~~~----m~~~----------~~p~~~t----~~~~l~a~~-----------~~~~~~~~~~~~~~g~~ 135 (589)
+..++++|+.++.. +..- +.+|..- ...-...|- ...++..+..+ +.
T Consensus 94 ~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~A----l~ 169 (611)
T KOG1173|consen 94 KLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEA----LL 169 (611)
T ss_pred HHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHH----Hh
Confidence 99999999988872 2111 1111111 000000011 22233333222 23
Q ss_pred CchhHHHHHHHHHhc--CCHHHHHHHHhhCCC-----CChhHH----------------------HHHHHHHHcCCcHHH
Q 043490 136 AHVYVANALINMYSK--SCADEAWKVFENMEF-----RNVISW----------------------NSMIAAFRACKLEAQ 186 (589)
Q Consensus 136 ~~~~~~~~li~~y~~--g~~~~A~~lf~~m~~-----~~~~~~----------------------~~li~~~~~~g~~~~ 186 (589)
.|...+.++..+-.. --..+-+.+|+..+- -++..- ..++..--...-..+
T Consensus 170 ~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~ 249 (611)
T KOG1173|consen 170 ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAE 249 (611)
T ss_pred cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHH
Confidence 333333333322222 111222223322110 000000 001000000000001
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 043490 187 AIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGS 266 (589)
Q Consensus 187 a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~ 266 (589)
--+.+...+++.+.++++....+.. ++....+..=|.++...|+...-..+=..+.+. .|....+|-++.--|.-.|+
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcC
Confidence 1122367789999999999988753 455555656666777888777766666666665 37778899999999999999
Q ss_pred HHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043490 267 ISLSKQVFDKMTYHD---LVSWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSML 341 (589)
Q Consensus 267 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 341 (589)
.++|++.|.+...-| ...|-.....|+-.|..++|+..+... .+-| ....+.-+.--|.+.++.+.|.++|.+..
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999877443 368999999999999999999999888 3333 22334445556788899999999998775
Q ss_pred HhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 043490 342 ENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM--------PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQL 411 (589)
Q Consensus 342 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 411 (589)
++-| |+.+.+-+.-..-..+.+.+|..+|+.. +-.+ -..+++.|..+|++.+.+++|+..+++.+.+
T Consensus 408 ---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 408 ---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred ---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 6677 6667777777777889999999999876 1112 2456888999999999999999999999999
Q ss_pred CCCChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 412 EPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 412 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
.|.+..+|.+++-+|...|+++.|...|.+...
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999987653
No 49
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.37 E-value=1e-08 Score=102.37 Aligned_cols=361 Identities=11% Similarity=0.112 Sum_probs=264.0
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-CcchHHHHHHH
Q 043490 6 QIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--R-NVVSWTALISG 82 (589)
Q Consensus 6 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~ 82 (589)
.||..-.+.|.+.+.++-|+.+|...++-+| .+...|...+..--..|..++-..+|++... | ....|-.....
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp---~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake 593 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFP---CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKE 593 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHH
Confidence 3555566666667777777777777776666 6666776666666666777777766666543 2 33445555555
Q ss_pred HHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHh
Q 043490 83 YAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFE 161 (589)
Q Consensus 83 ~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~ 161 (589)
+-..|+...|..++....+. . +.+...|-+.+..-.. ..++.|+.+|.
T Consensus 594 ~w~agdv~~ar~il~~af~~------------------------------~-pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEA------------------------------N-PNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHh------------------------------C-CCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 66667777776666655443 1 2355667777777788 88999999998
Q ss_pred hCCC--CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCcCcHHHHHHH
Q 043490 162 NMEF--RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDW-CTFSIVLKACAGLVTERHASAV 238 (589)
Q Consensus 162 ~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i 238 (589)
+... ++...|.--+..- --.+..++|++++++..+. -|+- ..|..+...+-+.++++.|+..
T Consensus 643 kar~~sgTeRv~mKs~~~e-------------r~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 643 KARSISGTERVWMKSANLE-------------RYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred HHhccCCcchhhHHHhHHH-------------HHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 7653 5556665544444 5567888999998887763 4554 4566667777888899999988
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCC
Q 043490 239 HSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM--NVQPD 313 (589)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~ 313 (589)
|..-.+. .|..+..|-.|...=-+.|.+-.|+.+|++.. ..|...|-..|..-.+.|..+.|..+..+. ..+.+
T Consensus 708 Y~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 708 YLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred HHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 8766554 36667788889888899999999999999876 346789999999999999999999988887 44445
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 043490 314 SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGS 391 (589)
Q Consensus 314 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~ 391 (589)
...|..-|....+.++-......+ + ...-|..+.-.+..+|-...++++|.+.|.+. ...|| ..+|.-+...
T Consensus 787 g~LWaEaI~le~~~~rkTks~DAL----k--kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykf 860 (913)
T KOG0495|consen 787 GLLWAEAIWLEPRPQRKTKSIDAL----K--KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKF 860 (913)
T ss_pred chhHHHHHHhccCcccchHHHHHH----H--hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHH
Confidence 567777776666666544443333 2 22457777788888899999999999999988 66776 7899999999
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 043490 392 CRKHGETRLAELAATKLKQLEPGDSLGFVQM 422 (589)
Q Consensus 392 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 422 (589)
+.++|.-+.-.+++.+....+|.....|...
T Consensus 861 el~hG~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 861 ELRHGTEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred HHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 9999999999999999999999765555544
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=1.9e-10 Score=108.10 Aligned_cols=197 Identities=14% Similarity=0.135 Sum_probs=164.5
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 043490 248 EDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLS 322 (589)
Q Consensus 248 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~ 322 (589)
......+..+...|...|++++|...|++.. ..+...+..+...|...|++++|.+.|++. ...| +...+..+..
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 3446677888999999999999999999876 335678888899999999999999999998 5555 4567778888
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHH
Q 043490 323 ACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRL 400 (589)
Q Consensus 323 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 400 (589)
.+...|++++|.+.++..............+..+...+.+.|++++|.+.+++. ...|+ ...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 899999999999999998653222224456777888999999999999999988 44454 6788889999999999999
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 401 AELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 401 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
|...+++..+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999998888888888999999999999999999887754
No 51
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=7.3e-10 Score=105.64 Aligned_cols=389 Identities=16% Similarity=0.131 Sum_probs=258.4
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHHhcCChHHHHHHHhcCCC--CCcchHHHHHHHHHhCCCh
Q 043490 14 ACALHGNIKQAMQLHEHMINNFPNEPQDL--FVTNHLINMYAKFGYLDDARHLFDEMPK--RNVVSWTALISGYAQHGNA 89 (589)
Q Consensus 14 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~ 89 (589)
.+.+.+.+.+|...++-.+...|.+..+. ...+.+.-.+.+.|++++|+.-|+...+ ||..+--.|+-.+.--|+.
T Consensus 246 i~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ 325 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDA 325 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcH
Confidence 34566788899999988777654333332 3455566667889999999999997653 7766544444455556888
Q ss_pred hHHHHHHHHHHhc-cCCCceeH--------HHHHHH-hchhhHHHH-------HHHHH--HhcCCCchhH--------H-
Q 043490 90 EECFRLFCSLLQY-FFPNEFSL--------ASVLIS-CDYLHGKLV-------HALAL--KFSLDAHVYV--------A- 141 (589)
Q Consensus 90 ~~A~~~~~~m~~~-~~p~~~t~--------~~~l~a-~~~~~~~~~-------~~~~~--~~g~~~~~~~--------~- 141 (589)
++..+.|..|..- ..||...| ..++.. ...+.-+.. .+..+ ...+-..+.. |
T Consensus 326 ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwc 405 (840)
T KOG2003|consen 326 EKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWC 405 (840)
T ss_pred HHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHH
Confidence 8999999998875 44444322 112211 111111100 00000 0111111110 0
Q ss_pred ---------HHH--------HHHHhc-CCHHHHHHHHhhCCCCChhHHHH----HH-HHHHc-CCcHHHHHHHH------
Q 043490 142 ---------NAL--------INMYSK-SCADEAWKVFENMEFRNVISWNS----MI-AAFRA-CKLEAQAIELF------ 191 (589)
Q Consensus 142 ---------~~l--------i~~y~~-g~~~~A~~lf~~m~~~~~~~~~~----li-~~~~~-~g~~~~a~~~~------ 191 (589)
.-| ..-|.+ |+++.|.+++.-...+|..+-.+ |- --|.+ ..++..|.+.-
T Consensus 406 le~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~ 485 (840)
T KOG2003|consen 406 LESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI 485 (840)
T ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc
Confidence 000 012467 88888888877776554333221 11 11222 23344444331
Q ss_pred ---------------HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHH
Q 043490 192 ---------------AKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANA 256 (589)
Q Consensus 192 ---------------~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 256 (589)
..+|++++|.+.|++.....-.-....|++-+ .+-..|++++|...|-.+... +..+..+...
T Consensus 486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~q 563 (840)
T KOG2003|consen 486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQ 563 (840)
T ss_pred cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHH
Confidence 45699999999999998754333344454443 346789999999887665433 2446777788
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHH
Q 043490 257 LIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQ 331 (589)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~ 331 (589)
+.+.|-...+...|.+++-+.. ..|+...+-|...|-+.|+-.+|.+.+-+- ..-| |..|...|..-|....-++
T Consensus 564 ianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHH
Confidence 8899999999999999998765 568889999999999999999999988777 4444 6778888888888888999
Q ss_pred HHHHHHHHhHHhcCCccCcchHHHHHHHH-hhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043490 332 EGNKVFHSMLENHGVVPQLDHYACMVDLL-GRVGRILEAEKLIREM--PMEPDSVIWSVLLGSCRKHGETRLAELAATKL 408 (589)
Q Consensus 332 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 408 (589)
++..+|+... -+.|+..-|..||..+ .|.|++.+|+++++.. .+..|......|++.|...|- .++.+..+++
T Consensus 644 kai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl-~d~key~~kl 719 (840)
T KOG2003|consen 644 KAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL-KDAKEYADKL 719 (840)
T ss_pred HHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc-hhHHHHHHHH
Confidence 9999998764 6789999999888655 5689999999999998 555578888889988887763 3444444444
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=3.6e-11 Score=123.39 Aligned_cols=263 Identities=14% Similarity=0.147 Sum_probs=192.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 043490 202 FLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHD 281 (589)
Q Consensus 202 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 281 (589)
.++..+...|+.|+.+||.+++.-||..|+.+.|- +|..|.-...+.+..+++.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46678889999999999999999999999999999 9999999999999999999999999999987765 788
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHh
Q 043490 282 LVSWNSILKAYALHGQAKEALQLFSNMNVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLG 361 (589)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 361 (589)
..+|..+..+|.++|+..- ++..++ -...+...++..|.-..-..++..+.-..+.-||. ...+....
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv 150 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLV 150 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHH
Confidence 8999999999999999765 322222 22333444555555555555554432222334443 34566677
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHH
Q 043490 362 RVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGE-TRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRK 440 (589)
Q Consensus 362 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 440 (589)
-.|.++.+++++..+|...-......+++-+..... +++-..+.+...+ .| ++.+|..+...-..+|+.+.|..++.
T Consensus 151 ~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ll~ 228 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKNLLY 228 (1088)
T ss_pred HHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHHHHH
Confidence 788899999999888643322222223555544443 3333344444444 44 78999999999999999999999999
Q ss_pred HHhcCCCccCCceeeEEECCEEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCcccCCCcc
Q 043490 441 EMKGSRVRKYPGLSWIEIENRVHEFASGGKRHPQREAIFKKLEELIGQLKGMGYVPETSLA 501 (589)
Q Consensus 441 ~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~ 501 (589)
+|+++|++..+.+.|..+ .|.... ..++.+.+.|++.|+.|+.++.
T Consensus 229 emke~gfpir~HyFwpLl--------~g~~~~-------q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 229 EMKEKGFPIRAHYFWPLL--------LGINAA-------QVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred HHHHcCCCcccccchhhh--------hcCccc-------hHHHHHHHHHHHhcCCCCcchh
Confidence 999999999999999764 332221 2345788999999999996554
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.30 E-value=1.4e-08 Score=96.22 Aligned_cols=280 Identities=15% Similarity=0.104 Sum_probs=216.3
Q ss_pred HHHHHHhc---CCHHHHHHHHhhCCCC---ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 043490 143 ALINMYSK---SCADEAWKVFENMEFR---NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDW 216 (589)
Q Consensus 143 ~li~~y~~---g~~~~A~~lf~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 216 (589)
.+..+..+ |++..|+++..+-.+. .+..|..-..+- .+.|+.+.+-.++.+.-+.--.++.
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA-------------~qrgd~~~an~yL~eaae~~~~~~l 153 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAA-------------QQRGDEDRANRYLAEAAELAGDDTL 153 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHH-------------HhcccHHHHHHHHHHHhccCCCchH
Confidence 34444444 9999999999875432 233344444455 7889999999999998875335556
Q ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-----------hHH
Q 043490 217 CTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDL-----------VSW 285 (589)
Q Consensus 217 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~ 285 (589)
..+.+........|+.+.|..-...+.+.+ +....+.......|.+.|++.....++..+.+... .+|
T Consensus 154 ~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~ 232 (400)
T COG3071 154 AVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAW 232 (400)
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHH
Confidence 666677777889999999999999998887 77788899999999999999999999999985322 478
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhc
Q 043490 286 NSILKAYALHGQAKEALQLFSNM--NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRV 363 (589)
Q Consensus 286 ~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 363 (589)
+.++.-....+..+.-...+++. ..+-++..-.+++.-+...|+.++|.++..+..++ +..|+ . +..-...+-
T Consensus 233 ~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L-~~~~~~l~~ 307 (400)
T COG3071 233 EGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---L-CRLIPRLRP 307 (400)
T ss_pred HHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---H-HHHHhhcCC
Confidence 88888777777777777788887 66666777777888888999999999999888765 55555 1 111223345
Q ss_pred CCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHH
Q 043490 364 GRILEAEKLIREM----PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIR 439 (589)
Q Consensus 364 g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 439 (589)
++.+.-++..++. |.. +..+.+|...|.+++.+.+|...|+..++..| +...|..+..+|.+.|+..+|.+++
T Consensus 308 ~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHH
Confidence 5555544444443 444 47888999999999999999999999999998 7789999999999999999999999
Q ss_pred HHHhc
Q 043490 440 KEMKG 444 (589)
Q Consensus 440 ~~m~~ 444 (589)
++-..
T Consensus 385 ~e~L~ 389 (400)
T COG3071 385 REALL 389 (400)
T ss_pred HHHHH
Confidence 87663
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=1.3e-11 Score=84.31 Aligned_cols=50 Identities=30% Similarity=0.651 Sum_probs=46.6
Q ss_pred CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhC
Q 043490 166 RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAG 228 (589)
Q Consensus 166 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 228 (589)
||+++||++|.+| .+.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~-------------~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGY-------------CKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHH-------------HHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 7899999999999 9999999999999999999999999999999999875
No 55
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=1.6e-09 Score=109.65 Aligned_cols=228 Identities=15% Similarity=0.168 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHh-----C-CCCcH-HHHHHHHHHHHhcCCHHHHHHHHhhcC--------C-
Q 043490 216 WCTFSIVLKACAGLVTERHASAVHSLIAKY-----G-FEDDT-VIANALIHAYARCGSISLSKQVFDKMT--------Y- 279 (589)
Q Consensus 216 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----g-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~--------~- 279 (589)
..|...+...|...|+++.|..+++..++. | ..|.+ ...+.+...|...+++++|..+|+++. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 357777889999999999999999988776 2 12333 334458889999999999999998875 1
Q ss_pred -C-ChhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCC-CCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcC--
Q 043490 280 -H-DLVSWNSILKAYALHGQAKEALQLFSNM--------NVQ-PDSA-TFVSLLSACSHAGLVQEGNKVFHSMLENHG-- 345 (589)
Q Consensus 280 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~-p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 345 (589)
| -..+++.|...|.+.|++++|...+++. +.. |... -++.+...|...+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 2357888889999999999988888777 222 2332 466777788999999999999987765443
Q ss_pred CccC----cchHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh-
Q 043490 346 VVPQ----LDHYACMVDLLGRVGRILEAEKLIREM---------PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQ- 410 (589)
Q Consensus 346 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 410 (589)
..++ ..+++.|...|...|++++|+++++++ +..+. ...++-|..+|.+.++++.|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 347999999999999999999999887 11222 55677889999999999999999988654
Q ss_pred ---cCC---CChhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 411 ---LEP---GDSLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 411 ---~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
.+| +...+|..|+..|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344 445678899999999999999999998775
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=3.3e-09 Score=112.58 Aligned_cols=245 Identities=13% Similarity=0.054 Sum_probs=181.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHh---------CcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 043490 195 KNEEEALFLFRQLQREGMAPDW-CTFSIVLKACA---------GLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARC 264 (589)
Q Consensus 195 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~---------~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~ 264 (589)
+..++|+.+|++..+. .|+. ..|..+..++. ..++.++|...++.+++.. +.+...+..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 3467899999998874 4544 34444433332 3355899999999999886 66788899999999999
Q ss_pred CCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhccCcHHHHHHHHHH
Q 043490 265 GSISLSKQVFDKMT--YH-DLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDSA-TFVSLLSACSHAGLVQEGNKVFHS 339 (589)
Q Consensus 265 g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 339 (589)
|++++|...|++.. .| +...|..+...+...|++++|+..+++. .+.|+.. .+..++..+...|++++|...+++
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999999976 33 4568888999999999999999999999 8888753 333445556678999999999988
Q ss_pred hHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh
Q 043490 340 MLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDS 416 (589)
Q Consensus 340 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 416 (589)
..+.. .| +...+..+...|...|++++|...++++ +..|+ ...++.+...+...| +.|...++.+.+..-..+
T Consensus 432 ~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 76431 34 3445677888899999999999999988 44555 444555666667777 477777777766332122
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHHhcCCC
Q 043490 417 LGFVQMSNIYCLSGSFNKARLIRKEMKGSRV 447 (589)
Q Consensus 417 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 447 (589)
..+..+...|+-.|+-+.+..+ +++.+.|-
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 2223367778888888888777 77776553
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=2.1e-08 Score=92.25 Aligned_cols=213 Identities=14% Similarity=0.174 Sum_probs=127.0
Q ss_pred cCChHHHHHHHhcCCCCCcchHH---HHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHH
Q 043490 55 FGYLDDARHLFDEMPKRNVVSWT---ALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALK 131 (589)
Q Consensus 55 ~g~~~~A~~~f~~m~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~ 131 (589)
..+.++|.++|-+|.+-|..++. +|-+.|-+.|..+.|+++-..+.++ || .|+.--
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s--pd-lT~~qr------------------ 106 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES--PD-LTFEQR------------------ 106 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CC-CchHHH------------------
Confidence 46889999999999876666554 5777888899999999988877764 22 222111
Q ss_pred hcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCCCChh---HHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHH
Q 043490 132 FSLDAHVYVANALINMYSK-SCADEAWKVFENMEFRNVI---SWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQL 207 (589)
Q Consensus 132 ~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m 207 (589)
....-.|..-|.. |-+|.|+.+|..+.+.... .-..|+..| .+..+|++|++.-+++
T Consensus 107 ------~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IY-------------Q~treW~KAId~A~~L 167 (389)
T COG2956 107 ------LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIY-------------QATREWEKAIDVAERL 167 (389)
T ss_pred ------HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHH-------------HHhhHHHHHHHHHHHH
Confidence 1122334455666 7778888887776653322 334455556 7777777777777777
Q ss_pred HHcCCCCCHH----HHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh
Q 043490 208 QREGMAPDWC----TFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLV 283 (589)
Q Consensus 208 ~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 283 (589)
...+-++..+ .|.-+........+++.|..++....+.+ +..+.+--.+.+.+...|+++.|.+.++.+.+.|..
T Consensus 168 ~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 168 VKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred HHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 6655444332 34444444445556666666666665554 333444444555566666666666666665544432
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHhC
Q 043490 284 ----SWNSILKAYALHGQAKEALQLFSNM 308 (589)
Q Consensus 284 ----~~~~li~~~~~~g~~~~A~~~~~~m 308 (589)
....|..+|.+.|+.++.+..+.++
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3344445555555555555555554
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=7.2e-07 Score=84.87 Aligned_cols=408 Identities=12% Similarity=0.036 Sum_probs=227.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHh-C---C-------------CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc
Q 043490 12 FHACALHGNIKQAMQLHEHMINN-F---P-------------NEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVV 74 (589)
Q Consensus 12 l~~~~~~g~~~~a~~~~~~~~~~-~---~-------------~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~ 74 (589)
++..-..+.+..+++-|..+.+. . . ..+.+...-...+..|...++-+.|.....+.+..-..
T Consensus 50 ~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~ 129 (564)
T KOG1174|consen 50 LNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRS 129 (564)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccccc
Confidence 34444445566677666655543 0 0 00123344456778888889999999999888864433
Q ss_pred hHHHHHHHHH-hCC-ChhHHHHHHHHHHhccCCCceeHHHHHHHhc--hhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 043490 75 SWTALISGYA-QHG-NAEECFRLFCSLLQYFFPNEFSLASVLISCD--YLHGKLVHALALKFSLDAHVYVANALINMYSK 150 (589)
Q Consensus 75 ~~~~li~~~~-~~g-~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~--~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~ 150 (589)
--+.|+.+.. +.| +-.++.--+...... .| .....+..... .....+---.+-+...++.......-+.+|+.
T Consensus 130 p~inlMla~l~~~g~r~~~~vl~ykevvre-cp--~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq 206 (564)
T KOG1174|consen 130 PRINLMLARLQHHGSRHKEAVLAYKEVIRE-CP--MALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQ 206 (564)
T ss_pred hhHHHHHHHHHhccccccHHHHhhhHHHHh-cc--hHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHH
Confidence 3444444333 332 222222222222221 00 00000000000 00011111111122223333333333344433
Q ss_pred ---CCHHHHHHHHhhCC-----CCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH----
Q 043490 151 ---SCADEAWKVFENME-----FRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCT---- 218 (589)
Q Consensus 151 ---g~~~~A~~lf~~m~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---- 218 (589)
++...|...|-... .-|+.....+...+ ...|+.++|...|++.+.. .|+..+
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~-------------~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~ 271 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCL-------------YYNGDYFQAEDIFSSTLCA--NPDNVEAMDL 271 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhh-------------hhhcCchHHHHHHHHHhhC--ChhhhhhHHH
Confidence 44444433332222 23566666777777 7778888888888777653 343322
Q ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHc
Q 043490 219 FSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTY---HDLVSWNSILKAYALH 295 (589)
Q Consensus 219 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 295 (589)
|..+ +.+.|+.+....+...+.... .-...-|-.-........+++.|+.+-++..+ +++..+-.-...+.+.
T Consensus 272 Ya~L---L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 272 YAVL---LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHH---HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhc
Confidence 2222 245667776666666554432 11111122222233445677777777776663 3444444444667778
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHH-HHHh-hcCCHHHHHH
Q 043490 296 GQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMV-DLLG-RVGRILEAEK 371 (589)
Q Consensus 296 g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~ 371 (589)
|+.++|.-.|+.. .+.| +-.+|..|+.+|...|...+|.-.-+...+.. .-+..+.+.+. ..+. ....-++|.+
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHH
Confidence 8888888888888 7776 45688888888888888888876665554322 22333333321 1221 1223467888
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 372 LIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 372 ~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
++++. .++|+ ....+.+...|...|..+.++.++++.+...| |....+.|.+.+.....+++|...|.....
T Consensus 426 f~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 426 FAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88776 77787 66777778888888888888888888888877 557788888888888888888888876654
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=4.7e-08 Score=89.97 Aligned_cols=294 Identities=13% Similarity=0.125 Sum_probs=203.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCChhHHH---HHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-
Q 043490 141 ANALINMYSKSCADEAWKVFENMEFRNVISWN---SMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDW- 216 (589)
Q Consensus 141 ~~~li~~y~~g~~~~A~~lf~~m~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 216 (589)
|-.=++.+...+.++|.++|-+|.+-|..|+. +|.+-| .+.|..++|+++-+.+... ||.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLf-------------RsRGEvDRAIRiHQ~L~~s---pdlT 102 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLF-------------RSRGEVDRAIRIHQTLLES---PDLT 102 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHH-------------HhcchHHHHHHHHHHHhcC---CCCc
Confidence 33344555557788999999998876665554 455666 7788888888888777653 332
Q ss_pred -----HHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh--------
Q 043490 217 -----CTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLV-------- 283 (589)
Q Consensus 217 -----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------- 283 (589)
...-.+..-|...|-+|.|+.+|..+.+.+ ..-.....-|+..|-...++++|.++-+++.+-+..
T Consensus 103 ~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAq 181 (389)
T COG2956 103 FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQ 181 (389)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHH
Confidence 233445556677888888999988887755 333455667888888888998888887766533222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHh
Q 043490 284 SWNSILKAYALHGQAKEALQLFSNM-NVQPDSAT-FVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLG 361 (589)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 361 (589)
-|.-+...+....+.+.|..++.+. ...|+.+- -..+.+.....|+++.|.+.++.+.+. +..--..+...|..+|.
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~ 260 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYA 260 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 3444555566678888899998888 66676553 334556777889999999999887543 32333457778888999
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhh---hcCChHHHHH
Q 043490 362 RVGRILEAEKLIREM-PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYC---LSGSFNKARL 437 (589)
Q Consensus 362 ~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~a~~ 437 (589)
..|+.++...++.++ ...+....-..+-..-....-.+.|...+.+-+...| +...+..|+..-. ..|++.+...
T Consensus 261 ~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~ 339 (389)
T COG2956 261 QLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLD 339 (389)
T ss_pred HhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHH
Confidence 999999999888877 4445555555555555555556777777777777777 5666677776653 4467888888
Q ss_pred HHHHHhcCCCccCCce
Q 043490 438 IRKEMKGSRVRKYPGL 453 (589)
Q Consensus 438 ~~~~m~~~~~~~~~~~ 453 (589)
.+..|....++..|.+
T Consensus 340 ~lr~mvge~l~~~~~Y 355 (389)
T COG2956 340 LLRDMVGEQLRRKPRY 355 (389)
T ss_pred HHHHHHHHHHhhcCCc
Confidence 9999987767666643
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.3e-07 Score=91.77 Aligned_cols=382 Identities=12% Similarity=0.030 Sum_probs=249.8
Q ss_pred CCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHH
Q 043490 2 LHS-TQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALI 80 (589)
Q Consensus 2 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li 80 (589)
.|| +.-|....-+|...|++++..+--...++..| .-+-++..-..++-..|++++|+.= +|-.+++
T Consensus 145 ~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P---~Y~KAl~RRA~A~E~lg~~~eal~D---------~tv~ci~ 212 (606)
T KOG0547|consen 145 CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNP---DYVKALLRRASAHEQLGKFDEALFD---------VTVLCIL 212 (606)
T ss_pred CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc---HHHHHHHHHHHHHHhhccHHHHHHh---------hhHHHHh
Confidence 577 77788888899999999988887777776544 4456677777788888888887631 2333344
Q ss_pred HHHHhCCChhHHHHHHH--------H-HHhc---cCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 043490 81 SGYAQHGNAEECFRLFC--------S-LLQY---FFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMY 148 (589)
Q Consensus 81 ~~~~~~g~~~~A~~~~~--------~-m~~~---~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y 148 (589)
.++-.+.-.--+.++++ + |..+ +.|......+.+..+. +...... ...+-..|...-+.+-..|
T Consensus 213 ~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~---~~~~~~~-~~~~~ksDa~l~~~l~~l~ 288 (606)
T KOG0547|consen 213 EGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFH---ADPKPLF-DNKSDKSDAALAEALEALE 288 (606)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcc---ccccccc-cCCCccchhhHHHHHHHHH
Confidence 43333322222223322 2 2211 4455444444444332 0000000 0001122233333333333
Q ss_pred hc--CCHHHHHHHHhhCC-------CC---ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 043490 149 SK--SCADEAWKVFENME-------FR---NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDW 216 (589)
Q Consensus 149 ~~--g~~~~A~~lf~~m~-------~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 216 (589)
.. ..+..|...+.+-. .. |... ..|..++.-.|-+ +.-.|+...|...|+..+.....++.
T Consensus 289 ~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~al~~~gtF------~fL~g~~~~a~~d~~~~I~l~~~~~~ 361 (606)
T KOG0547|consen 289 KGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEALLLRGTF------HFLKGDSLGAQEDFDAAIKLDPAFNS 361 (606)
T ss_pred hhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHHHHHhhhh------hhhcCCchhhhhhHHHHHhcCcccch
Confidence 33 34444444443221 11 1111 2222222222222 15668889999999998886543333
Q ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHH
Q 043490 217 CTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYH---DLVSWNSILKAYA 293 (589)
Q Consensus 217 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~ 293 (589)
.|.-+..+|....+.++....|....+.+ +.++.+|.--..++.-.+++++|..=|++...- ++.+|-.+..+.-
T Consensus 362 -lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 362 -LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALY 439 (606)
T ss_pred -HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Confidence 27777788899999999999999999887 677888888899999999999999999998743 5567777777777
Q ss_pred HcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCc---------chHHHHHHHHhh
Q 043490 294 LHGQAKEALQLFSNM--NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQL---------DHYACMVDLLGR 362 (589)
Q Consensus 294 ~~g~~~~A~~~~~~m--~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---------~~~~~li~~~~~ 362 (589)
+.+++++++..|++. ..+--+..|+.....+...++++.|.+.|+..++ +.|+. .+.-+++-.- -
T Consensus 440 r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~~q-w 515 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALLVLQ-W 515 (606)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhhhHhhhc-h
Confidence 889999999999999 4444566888889999999999999999998753 34441 1112222222 3
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 043490 363 VGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLE 412 (589)
Q Consensus 363 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 412 (589)
.+++..|..++++. .+.|- ...|.+|...-.+.|+.++|+++|++...+-
T Consensus 516 k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 516 KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 48999999999998 66675 7789999999999999999999999987654
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=2e-08 Score=101.92 Aligned_cols=237 Identities=16% Similarity=0.154 Sum_probs=143.9
Q ss_pred cCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCC----------CChhH-HHHHHHHHHcCCcHHHHHHHHHHcCCHHHH
Q 043490 133 SLDAHVYVANALINMYSK-SCADEAWKVFENMEF----------RNVIS-WNSMIAAFRACKLEAQAIELFAKMKNEEEA 200 (589)
Q Consensus 133 g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~----------~~~~~-~~~li~~~~~~g~~~~a~~~~~~~g~~~~A 200 (589)
+.+.-..+...|..+|.. |+++.|..+|+...+ +.+.+ -+.+...| ...+++++|
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y-------------~~~~k~~eA 260 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVY-------------RSLGKYDEA 260 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHH-------------HHhccHHHH
Confidence 334444566668888999 999999988876542 11111 12233344 566666666
Q ss_pred HHHHHHHHHc-----C-CCC-CHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 043490 201 LFLFRQLQRE-----G-MAP-DWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQV 273 (589)
Q Consensus 201 ~~~~~~m~~~-----g-~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 273 (589)
..+|+++... | ..| -..+++.|-.+|.+.|++++|...++.+.+.
T Consensus 261 v~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I---------------------------- 312 (508)
T KOG1840|consen 261 VNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI---------------------------- 312 (508)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------
Confidence 6666655431 1 011 1123333444444444444444444433221
Q ss_pred HhhcC---CCCh-hHHHHHHHHHHHcCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHhccCcHHHHHHHHHH
Q 043490 274 FDKMT---YHDL-VSWNSILKAYALHGQAKEALQLFSNM------NVQPD----SATFVSLLSACSHAGLVQEGNKVFHS 339 (589)
Q Consensus 274 ~~~~~---~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m------~~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~ 339 (589)
++... .+.+ ..++.++..+...+++++|..++++. -..++ ..+++.|...+.+.|++++|.++|+.
T Consensus 313 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 313 YEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 11100 1122 13444555666667777777766665 12222 24778888888888888888888887
Q ss_pred hHHhc----C-Ccc-CcchHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 043490 340 MLENH----G-VVP-QLDHYACMVDLLGRVGRILEAEKLIREM--------PMEPD-SVIWSVLLGSCRKHGETRLAELA 404 (589)
Q Consensus 340 ~~~~~----~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 404 (589)
+++.. + ..+ ...+++.|...|.+.++..+|.++|.+. +-.|+ ..+|..|...|...|+++.|+++
T Consensus 393 ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~ 472 (508)
T KOG1840|consen 393 AIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEEL 472 (508)
T ss_pred HHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHH
Confidence 76543 1 112 2346777888888888888888888765 34456 67899999999999999999999
Q ss_pred HHHHhh
Q 043490 405 ATKLKQ 410 (589)
Q Consensus 405 ~~~~~~ 410 (589)
.+.+..
T Consensus 473 ~~~~~~ 478 (508)
T KOG1840|consen 473 EEKVLN 478 (508)
T ss_pred HHHHHH
Confidence 998864
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.15 E-value=1.4e-08 Score=95.24 Aligned_cols=196 Identities=14% Similarity=0.079 Sum_probs=152.2
Q ss_pred CHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHH
Q 043490 215 DWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKA 291 (589)
Q Consensus 215 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 291 (589)
....+..+...+...|+++.|.+.+..+++.. +.+...+..+...|...|++++|.+.|++.. ..+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 34566677778888899999999998887764 5567778888888999999999999988776 3455678888888
Q ss_pred HHHcCCHHHHHHHHHhC-CC--CC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHH
Q 043490 292 YALHGQAKEALQLFSNM-NV--QP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRIL 367 (589)
Q Consensus 292 ~~~~g~~~~A~~~~~~m-~~--~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 367 (589)
+...|++++|.+.|++. .. .| ....+..+...+...|++++|.+.+....+.. +.+...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHH
Confidence 89999999999999998 32 22 34466667778888999999999998876532 224557788888999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 043490 368 EAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEP 413 (589)
Q Consensus 368 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 413 (589)
+|...+++. ...| +...+..+...+...|+.+.|....+.+.+..|
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999887 3233 466777778888889999999998888766543
No 63
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.14 E-value=4.6e-07 Score=86.11 Aligned_cols=284 Identities=14% Similarity=0.054 Sum_probs=210.2
Q ss_pred HHHHHHHHh--CCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCH
Q 043490 77 TALISGYAQ--HGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCA 153 (589)
Q Consensus 77 ~~li~~~~~--~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~ 153 (589)
..+..+..+ .|+|.+|+++..+-.+. + +.....|..-..+-.. |+.
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~------------------------------~-e~p~l~~l~aA~AA~qrgd~ 134 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEH------------------------------G-EQPVLAYLLAAEAAQQRGDE 134 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhc------------------------------C-cchHHHHHHHHHHHHhcccH
Confidence 445556554 68999999888775443 1 1112223333345555 888
Q ss_pred HHHHHHHhhCCCC----ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCc
Q 043490 154 DEAWKVFENMEFR----NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGL 229 (589)
Q Consensus 154 ~~A~~lf~~m~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 229 (589)
+.|-+.+.+..++ +....-+..... ...|++..|..-..++.+.+ +-+.........+|.+.
T Consensus 135 ~~an~yL~eaae~~~~~~l~v~ltrarll-------------l~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~ 200 (400)
T COG3071 135 DRANRYLAEAAELAGDDTLAVELTRARLL-------------LNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRL 200 (400)
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHH-------------HhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHh
Confidence 8888888877653 333344444455 77788888888888887764 33556778888899999
Q ss_pred CcHHHHHHHHHHHHHhCCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHH
Q 043490 230 VTERHASAVHSLIAKYGFEDDT-------VIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAK 299 (589)
Q Consensus 230 ~~~~~a~~i~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 299 (589)
|++.....+...+.+.|.-.|. .+|+.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.+
T Consensus 201 g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~ 280 (400)
T COG3071 201 GAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHD 280 (400)
T ss_pred ccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChH
Confidence 9999999999999988865553 456777776666666666667788777 446777778888899999999
Q ss_pred HHHHHHHhC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 043490 300 EALQLFSNM---NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM 376 (589)
Q Consensus 300 ~A~~~~~~m---~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 376 (589)
+|.++.++. +..|+ ...+-.+.+.++.+.-.+..+.-.+.++..| ..+.+|...|.+.+.+.+|.+.|+..
T Consensus 281 ~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaA 354 (400)
T COG3071 281 EAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAA 354 (400)
T ss_pred HHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999888 55555 2233356677787777777777666665555 68889999999999999999999987
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 043490 377 -PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQL 411 (589)
Q Consensus 377 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 411 (589)
+..|+..+|+.+..++.+.|+.++|.+..++.+.+
T Consensus 355 l~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 355 LKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88899999999999999999999999999987743
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.12 E-value=7.5e-09 Score=109.83 Aligned_cols=224 Identities=14% Similarity=0.062 Sum_probs=171.6
Q ss_pred CHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh---------cCCHHHHHHHHhhcC--
Q 043490 215 DWCTFSIVLKACA-----GLVTERHASAVHSLIAKYGFEDDTVIANALIHAYAR---------CGSISLSKQVFDKMT-- 278 (589)
Q Consensus 215 ~~~t~~~ll~a~~-----~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~-- 278 (589)
+...|...+.+-. ..++++.|.+.+++.++.. |.+...+..+...|.. .+++++|...+++..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4455555555531 2345789999999998875 4456667666665542 345889999999887
Q ss_pred -CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCc-chHH
Q 043490 279 -YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDS-ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQL-DHYA 354 (589)
Q Consensus 279 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~ 354 (589)
..+..+|..+...+...|++++|+..|++. ...|+. ..+..+..++...|++++|...++...+ +.|+. ..+.
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~ 410 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGI 410 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHH
Confidence 346678888888999999999999999999 777864 5777888899999999999999999864 35543 2334
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC--CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCC
Q 043490 355 CMVDLLGRVGRILEAEKLIREM--PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGS 431 (589)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 431 (589)
.+...+...|++++|...+++. ...|+ ...+..+..++...|+.++|...++++....|.+......+...|...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH-
Confidence 4455677789999999999887 22354 5567778888889999999999999998888877777788888888888
Q ss_pred hHHHHHHHHHHhc
Q 043490 432 FNKARLIRKEMKG 444 (589)
Q Consensus 432 ~~~a~~~~~~m~~ 444 (589)
+.|...++.+.+
T Consensus 490 -~~a~~~l~~ll~ 501 (553)
T PRK12370 490 -ERALPTIREFLE 501 (553)
T ss_pred -HHHHHHHHHHHH
Confidence 488887777664
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.10 E-value=6.3e-07 Score=91.84 Aligned_cols=396 Identities=16% Similarity=0.123 Sum_probs=245.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHhc-cCCCceeHHHHH-
Q 043490 40 QDLFVTNHLINMYAKFGYLDDARHLFDEMPK---RNVVSWTALISGYAQHGNAEECFRLFCSLLQY-FFPNEFSLASVL- 114 (589)
Q Consensus 40 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~~l- 114 (589)
.|+.+|..|.-++..+|+++.+-+.|++... .....|+.+-..|...|.-..|+.+++.-... -.|+..+...+.
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 7999999999999999999999999998653 34567999999999999999999999877665 335544443333
Q ss_pred HHhc-----hhhHHHHHHHHHH--hcC--CCchhHHHHHHHHHhc------------CCHHHHHHHHhhCCC-----CCh
Q 043490 115 ISCD-----YLHGKLVHALALK--FSL--DAHVYVANALINMYSK------------SCADEAWKVFENMEF-----RNV 168 (589)
Q Consensus 115 ~a~~-----~~~~~~~~~~~~~--~g~--~~~~~~~~~li~~y~~------------g~~~~A~~lf~~m~~-----~~~ 168 (589)
+.|. .++|......++. .|. ......+-.+--+|.. ....++...+++..+ |++
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 3343 3333333333332 111 1112222222222322 112345555555532 333
Q ss_pred hHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCC
Q 043490 169 ISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFE 248 (589)
Q Consensus 169 ~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 248 (589)
.-|-++- | +..++.+.|++..++...-+-.-+...|..+.-.+...+++..|..+.+.....- +
T Consensus 481 if~lalq--~-------------A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~ 544 (799)
T KOG4162|consen 481 IFYLALQ--Y-------------AEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-G 544 (799)
T ss_pred HHHHHHH--H-------------HHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-h
Confidence 3333332 2 5667788888888888877656677778777777788888888888887765431 1
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHh--------------------------hcC-----CCChhHHHHHHHHHHHcCC
Q 043490 249 DDTVIANALIHAYARCGSISLSKQVFD--------------------------KMT-----YHDLVSWNSILKAYALHGQ 297 (589)
Q Consensus 249 ~~~~~~~~li~~~~~~g~~~~A~~~~~--------------------------~~~-----~~~~~~~~~li~~~~~~g~ 297 (589)
.|-.....-+..-...++.++|..... .+. ..+...-..-+.+.+. -+
T Consensus 545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~ 623 (799)
T KOG4162|consen 545 DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQ 623 (799)
T ss_pred hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hh
Confidence 111111111111122334333332221 111 0111111111222221 11
Q ss_pred HHHHHH--HHHhCCCCC--CH------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCH
Q 043490 298 AKEALQ--LFSNMNVQP--DS------ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRI 366 (589)
Q Consensus 298 ~~~A~~--~~~~m~~~p--~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~ 366 (589)
.+.+.. .+....+.| +. ..|......+...+..++|...+.+.. ++.| ....|......+...|.+
T Consensus 624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhh
Confidence 111110 011112222 22 123445566777888888887776664 3344 455677777888899999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHH
Q 043490 367 LEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAEL--AATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEM 442 (589)
Q Consensus 367 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 442 (589)
++|.+.|... .+.|+ +.+..++...+.+.|+...|.. ++..+.+.+|.++..|..|..++-+.|+.+.|...|...
T Consensus 701 ~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 701 EEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9999998877 77887 7889999999999999999988 999999999999999999999999999999999999987
Q ss_pred hcCCCccCCceeeE
Q 043490 443 KGSRVRKYPGLSWI 456 (589)
Q Consensus 443 ~~~~~~~~~~~s~~ 456 (589)
.+..- .+|-..|.
T Consensus 781 ~qLe~-S~PV~pFs 793 (799)
T KOG4162|consen 781 LQLEE-SNPVLPFS 793 (799)
T ss_pred Hhhcc-CCCccccc
Confidence 65432 23334443
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.10 E-value=4e-06 Score=84.27 Aligned_cols=431 Identities=13% Similarity=0.130 Sum_probs=271.8
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHH
Q 043490 5 TQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALISGYA 84 (589)
Q Consensus 5 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 84 (589)
+..|..-++....+|++..-+..|+..++.+| +......|...+......|-++-+.+++++-.+-++..-+--|..++
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLp-vtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALP-VTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLA 180 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCc-hHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34566777888899999999999999998754 11345678888888888999999999999887777777888999999
Q ss_pred hCCChhHHHHHHHHHHhc-------cCCCceeHHHHHHHhc----hhhHHHHHHHHHHhcCC--Cc--hhHHHHHHHHHh
Q 043490 85 QHGNAEECFRLFCSLLQY-------FFPNEFSLASVLISCD----YLHGKLVHALALKFSLD--AH--VYVANALINMYS 149 (589)
Q Consensus 85 ~~g~~~~A~~~~~~m~~~-------~~p~~~t~~~~l~a~~----~~~~~~~~~~~~~~g~~--~~--~~~~~~li~~y~ 149 (589)
+.+++++|.+.+...+.. .+.+...|..+-.-.+ ......+. .+++.|+. +| -..|++|.+-|.
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvd-aiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVD-AIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHH-HHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 999999999999888754 1222223333222222 11111111 22333432 33 368999999999
Q ss_pred c-CCHHHHHHHHhhCCCC--ChhHHHHHHHHHHcCCcHH--HHHHHH-HHcC------CHHHHHHHHHHHHHcCC-----
Q 043490 150 K-SCADEAWKVFENMEFR--NVISWNSMIAAFRACKLEA--QAIELF-AKMK------NEEEALFLFRQLQREGM----- 212 (589)
Q Consensus 150 ~-g~~~~A~~lf~~m~~~--~~~~~~~li~~~~~~g~~~--~a~~~~-~~~g------~~~~A~~~~~~m~~~g~----- 212 (589)
+ |.++.|+.+|++.... .+.-++.+-++|++-..-- .-+++- .+.| +.+-.+.-|+.+...+.
T Consensus 260 r~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred HhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 9 9999999999886542 3333555555552211000 001100 0111 22334444555444321
Q ss_pred ------CCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCc------HHHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 043490 213 ------APDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDD------TVIANALIHAYARCGSISLSKQVFDKMTYH 280 (589)
Q Consensus 213 ------~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 280 (589)
+-+..+|..-.. ...|+..+-...+.++++. +.|. ...|..+...|-..|+++.|+.+|++..+-
T Consensus 340 VlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 112223332222 2346677777788888765 2222 346788999999999999999999998743
Q ss_pred Ch-------hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-------------------HHHHHHHHHHHhccCcHHHH
Q 043490 281 DL-------VSWNSILKAYALHGQAKEALQLFSNM-NVQPD-------------------SATFVSLLSACSHAGLVQEG 333 (589)
Q Consensus 281 ~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------------------~~t~~~ll~a~~~~g~~~~a 333 (589)
+- ..|..-...-.++.+++.|+++.++. .++.+ ...|...+..--..|-++..
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 22 35666666677889999999999988 22111 12233344444455677777
Q ss_pred HHHHHHhHHhcCCccCcc-hHHHHHHHHhhcCCHHHHHHHHHhC-CC--CCC-HHHHHHHHHHHHHc---CCHHHHHHHH
Q 043490 334 NKVFHSMLENHGVVPQLD-HYACMVDLLGRVGRILEAEKLIREM-PM--EPD-SVIWSVLLGSCRKH---GETRLAELAA 405 (589)
Q Consensus 334 ~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~--~p~-~~~~~~ll~~~~~~---g~~~~a~~~~ 405 (589)
..+++.+..-.=..|.+. .|. -.+-...-++++.+++++- ++ -|+ ..+|++.+.-+.+. .+++.|..+|
T Consensus 497 k~vYdriidLriaTPqii~NyA---mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 497 KAVYDRIIDLRIATPQIIINYA---MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHH---HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 888888764322233221 122 2233456789999999987 22 245 56898888776543 4789999999
Q ss_pred HHHhhcCCCChh--HHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 406 TKLKQLEPGDSL--GFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 406 ~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
+++++.-|+... .|...+..--+-|....|++++++..
T Consensus 574 EqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 574 EQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999997664322 23333333345588888899988753
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.09 E-value=1.7e-06 Score=89.10 Aligned_cols=405 Identities=14% Similarity=0.137 Sum_probs=256.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCcch-HHHHHHHHHhC-
Q 043490 11 LFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--RNVVS-WTALISGYAQH- 86 (589)
Q Consensus 11 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~-~~~li~~~~~~- 86 (589)
..+.+...|++++|++.+..-.+... ............|.+.|+.++|..++..+.+ |+-.. |..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~---Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQIL---DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence 34566788999999999987666544 5677888899999999999999999999886 44344 44444544222
Q ss_pred ----CChhHHHHHHHHHHhccCCCceeHHHHHHHhc-----hhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHH
Q 043490 87 ----GNAEECFRLFCSLLQYFFPNEFSLASVLISCD-----YLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEA 156 (589)
Q Consensus 87 ----g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~-----~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A 156 (589)
.+.+...++|+++... .|.....-.+.-... ...........++.|++ .+++.|-..|.. ...+-.
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~-yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEK-YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccccHHHHHHHHHHHHHh-CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 2567778888888665 343333322221111 22333444444555643 456677777877 666555
Q ss_pred HHHHhhCC------------------CCChhHH--HHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-
Q 043490 157 WKVFENME------------------FRNVISW--NSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPD- 215 (589)
Q Consensus 157 ~~lf~~m~------------------~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~- 215 (589)
.+++.... .|....| .-+...| ...|++++|++..++.+.. .|+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhy-------------d~~g~~~~Al~~Id~aI~h--tPt~ 227 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHY-------------DYLGDYEKALEYIDKAIEH--TPTL 227 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHH-------------HHhCCHHHHHHHHHHHHhc--CCCc
Confidence 55555431 1333345 4445556 8999999999999999885 565
Q ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh----------hHH
Q 043490 216 WCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDL----------VSW 285 (589)
Q Consensus 216 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~ 285 (589)
+..|..-...+-+.|++++|.+.++...... .-|..+-+..+..+.++|++++|.+++.....++. ..|
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~W 306 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMW 306 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHH
Confidence 5678888888999999999999999999887 66899999999999999999999999988875542 134
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHhC-----CCC-------------CCHHHHHHHHHHHhccC-------cHHHHHHHHH
Q 043490 286 --NSILKAYALHGQAKEALQLFSNM-----NVQ-------------PDSATFVSLLSACSHAG-------LVQEGNKVFH 338 (589)
Q Consensus 286 --~~li~~~~~~g~~~~A~~~~~~m-----~~~-------------p~~~t~~~ll~a~~~~g-------~~~~a~~~~~ 338 (589)
.....+|.+.|++..|++.|..+ .+. .+..+|..+|+..-+.. -...|.+++-
T Consensus 307 f~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl 386 (517)
T PF12569_consen 307 FETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYL 386 (517)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 33467899999999999887776 222 23334444444332211 1233445544
Q ss_pred HhHHhcCCccCcch-----------HHHHHHHH---hhcCCHHHHHHHHH-----------hC----CCCCCHHHHHHHH
Q 043490 339 SMLENHGVVPQLDH-----------YACMVDLL---GRVGRILEAEKLIR-----------EM----PMEPDSVIWSVLL 389 (589)
Q Consensus 339 ~~~~~~~~~p~~~~-----------~~~li~~~---~~~g~~~~A~~~~~-----------~m----~~~p~~~~~~~ll 389 (589)
.+............ -..+-.-- .+...-+++...-. .. +...|.....
T Consensus 387 ~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G--- 463 (517)
T PF12569_consen 387 ELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG--- 463 (517)
T ss_pred HHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH---
Confidence 44222111000000 00000000 01111111111110 00 1111221111
Q ss_pred HHHHHcC-CHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHH
Q 043490 390 GSCRKHG-ETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKE 441 (589)
Q Consensus 390 ~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 441 (589)
.-+.+.. =.++|.++++-+.+..|++..+|..-..+|.+.|++--|.+.+.+
T Consensus 464 ekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 464 EKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 1122333 468899999999999999999999999999999999888877653
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=2.4e-08 Score=97.05 Aligned_cols=212 Identities=13% Similarity=0.100 Sum_probs=152.0
Q ss_pred cCcHHHHHHHHHHHHHhC-CCCc--HHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHH
Q 043490 229 LVTERHASAVHSLIAKYG-FEDD--TVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEAL 302 (589)
Q Consensus 229 ~~~~~~a~~i~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 302 (589)
.+..+.+..-+.+++... ..|+ ...+..+...|.+.|+.++|...|++.. ..+...|+.+...|...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345566777777777542 2222 4567788888999999999999998876 346689999999999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC--CC
Q 043490 303 QLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM--PM 378 (589)
Q Consensus 303 ~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~ 378 (589)
+.|++. .+.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.|++. ..
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999999 88886 467788888888999999999999988653 454332222223345677899999999665 22
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-------hcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCC
Q 043490 379 EPDSVIWSVLLGSCRKHGETRLAELAATKLK-------QLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRV 447 (589)
Q Consensus 379 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 447 (589)
.|+...| . ......|+...+ ..++.+. ++.|....+|..++.+|.+.|++++|...|++..+.++
T Consensus 196 ~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3332222 2 222334554443 2444443 34455677899999999999999999999999887654
No 69
>PF13041 PPR_2: PPR repeat family
Probab=99.07 E-value=3.5e-10 Score=77.15 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Q 043490 214 PDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYAR 263 (589)
Q Consensus 214 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~ 263 (589)
||..+|+++|.+|++.|++++|.++|++|.+.|++||..+|+.++++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999875
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=9.7e-08 Score=92.81 Aligned_cols=221 Identities=11% Similarity=-0.050 Sum_probs=160.5
Q ss_pred HHcCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHH
Q 043490 192 AKMKNEEEALFLFRQLQREG-MAPD--WCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSIS 268 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 268 (589)
...+..+.++.-+.++.... ..|+ ...|......+...|+.+.|...+...++.. +.+...|+.+...|...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHH
Confidence 33456677888888887542 2232 3457777778889999999999999999876 667899999999999999999
Q ss_pred HHHHHHhhcCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 043490 269 LSKQVFDKMTY--H-DLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENH 344 (589)
Q Consensus 269 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 344 (589)
+|...|++..+ | +..+|..+...+...|++++|++.|++. ...|+..........+...++.++|...|.....
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-- 193 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYE-- 193 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 99999999863 3 4678888999999999999999999999 7777654322222234456789999999976543
Q ss_pred CCccCcchHHHHHHHHhhcCCHH--HHHHHHHhC-CC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh
Q 043490 345 GVVPQLDHYACMVDLLGRVGRIL--EAEKLIREM-PM----EP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDS 416 (589)
Q Consensus 345 ~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 416 (589)
...|+... ..++..+ .|++. ++++.+.+. .. .| ....|..+...+...|++++|...|+++.+.+|++.
T Consensus 194 ~~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 194 KLDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred hCCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 22343322 2333333 44443 333333322 11 12 246899999999999999999999999999998554
Q ss_pred hH
Q 043490 417 LG 418 (589)
Q Consensus 417 ~~ 418 (589)
.-
T Consensus 271 ~e 272 (296)
T PRK11189 271 VE 272 (296)
T ss_pred HH
Confidence 33
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.6e-07 Score=92.90 Aligned_cols=273 Identities=12% Similarity=0.010 Sum_probs=206.4
Q ss_pred CchhHHHHHHHHHhc-CCHHHHHHHHhhCCCC---ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043490 136 AHVYVANALINMYSK-SCADEAWKVFENMEFR---NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREG 211 (589)
Q Consensus 136 ~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g 211 (589)
.++.+...-.+-+.. +++.+..++++.+.+. +...+..-|..+ ...|+..+-..+=.+|.+.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l-------------~el~~~n~Lf~lsh~LV~~- 307 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACL-------------YELGKSNKLFLLSHKLVDL- 307 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHH-------------HHhcccchHHHHHHHHHHh-
Confidence 334444444455556 8888888888887754 344555566677 7888887777777777765
Q ss_pred CCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHH
Q 043490 212 MAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSI 288 (589)
Q Consensus 212 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 288 (589)
.+-.+.+|-++.--|...|...+|++.+....... +.-...|-.+...|+-.|.-|+|...+.... ...-..+--+
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYl 386 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYL 386 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHH
Confidence 34467889999888888899999999999876654 3345678889999999999999988876654 2222223335
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCcc----CcchHHHHHHHHh
Q 043490 289 LKAYALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENH-GVVP----QLDHYACMVDLLG 361 (589)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p----~~~~~~~li~~~~ 361 (589)
.--|.+.+..+-|.+.|.+. ++.|+ +..++-+.-...+.+.+.+|..+|+..+..- .+.+ ...+++.|..+|.
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 55688899999999999999 88884 5667777666667899999999998875321 1111 2335888899999
Q ss_pred hcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 043490 362 RVGRILEAEKLIREM-PME-PDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMS 423 (589)
Q Consensus 362 ~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 423 (589)
+.+++++|+..+++. ... .|..++.++.-.|...|+++.|...|.+.+.+.|++..+-..|.
T Consensus 467 kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 999999999999988 333 47899999999999999999999999999999998865544443
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.02 E-value=2.7e-05 Score=78.55 Aligned_cols=426 Identities=12% Similarity=0.110 Sum_probs=222.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC----------------
Q 043490 7 IYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK---------------- 70 (589)
Q Consensus 7 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---------------- 70 (589)
+|...+......+-++-+..++++.++. ++..-+--|..+++.+++++|.+.+.....
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk~------~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw 213 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLKV------APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLW 213 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhc------CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHH
Confidence 4555566666666667777777777664 223355666777777777777766655431
Q ss_pred ------------------------------CC--cchHHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhc
Q 043490 71 ------------------------------RN--VVSWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCD 118 (589)
Q Consensus 71 ------------------------------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~ 118 (589)
+| ...|++|..-|.+.|.++.|..+|++..+. .....-|+.+..+++
T Consensus 214 ~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~-v~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 214 LELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT-VMTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-heehhhHHHHHHHHH
Confidence 11 136999999999999999999999998876 223344666666666
Q ss_pred hhhHHHHHHHHH----HhcCCCchhHHHHHHHHHhc---CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHH----
Q 043490 119 YLHGKLVHALAL----KFSLDAHVYVANALINMYSK---SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQA---- 187 (589)
Q Consensus 119 ~~~~~~~~~~~~----~~g~~~~~~~~~~li~~y~~---g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a---- 187 (589)
.-+-..+...|. +.|-+.+.......+.-+.. ++..-.-.++-+-...++..|..-...+ .|+..+-
T Consensus 293 ~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~ty 370 (835)
T KOG2047|consen 293 QFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTY 370 (835)
T ss_pred HHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHH
Confidence 111111111111 11111111111111100000 0000000000000011233333322211 0000000
Q ss_pred -----------------------HHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhCcCcHHHHHHHHHH
Q 043490 188 -----------------------IELFAKMKNEEEALFLFRQLQREGMAPD---WCTFSIVLKACAGLVTERHASAVHSL 241 (589)
Q Consensus 188 -----------------------~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~ 241 (589)
-++|-.+|+.+.|..+|++..+-..+-- ..+|......=.+..+++.|..+.+.
T Consensus 371 teAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~ 450 (835)
T KOG2047|consen 371 TEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRR 450 (835)
T ss_pred HHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 0112566666666666666554322111 11222222222344455555555554
Q ss_pred HHHhC-----------CCC------cHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHH---HHHHHcCCHHHH
Q 043490 242 IAKYG-----------FED------DTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSIL---KAYALHGQAKEA 301 (589)
Q Consensus 242 ~~~~g-----------~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A 301 (589)
+.... .++ +..+|...++.--..|-++....+|+++.+--+.|=..++ .-+-.+..++++
T Consensus 451 A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfees 530 (835)
T KOG2047|consen 451 ATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEES 530 (835)
T ss_pred hhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHH
Confidence 43211 111 1223333444444455566666666665532222211111 122345667788
Q ss_pred HHHHHhC-CC--CCCHH-HHHHHHHHHh---ccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHh----hcCCHHHHH
Q 043490 302 LQLFSNM-NV--QPDSA-TFVSLLSACS---HAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLG----RVGRILEAE 370 (589)
Q Consensus 302 ~~~~~~m-~~--~p~~~-t~~~ll~a~~---~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~ 370 (589)
.++|++- .+ -|+.. .|+..|.-+. ....++.|+.+|++.++ |.+|. ....+--+|+ +-|....|+
T Consensus 531 Fk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~--~aKtiyLlYA~lEEe~GLar~am 606 (835)
T KOG2047|consen 531 FKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPE--HAKTIYLLYAKLEEEHGLARHAM 606 (835)
T ss_pred HHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHH--HHHHHHHHHHHHHHHhhHHHHHH
Confidence 8888876 22 24442 4555444333 23478999999999876 65553 2223333343 458888999
Q ss_pred HHHHhC--CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChh--HHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 371 KLIREM--PMEPD--SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSL--GFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 371 ~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
+++++. .+++. ...||..|.-....=-+..-..+++++++.-|++.. ...-.+++-.+.|..+.|+.++..-.+
T Consensus 607 siyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 607 SIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 999998 44443 567888887655554456677889999988774422 233566777899999999999987654
Q ss_pred C
Q 043490 445 S 445 (589)
Q Consensus 445 ~ 445 (589)
-
T Consensus 687 ~ 687 (835)
T KOG2047|consen 687 I 687 (835)
T ss_pred c
Confidence 3
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=6.9e-06 Score=81.95 Aligned_cols=406 Identities=12% Similarity=0.096 Sum_probs=234.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---------------------
Q 043490 11 LFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMP--------------------- 69 (589)
Q Consensus 11 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--------------------- 69 (589)
=++.+...|++++|.+.-..++...| .+......=+-++.+.+++++|+++.+.-.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~p---dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVP---DDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCC---CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHccc
Confidence 34566677888888888888887644 566666655666666666666665544322
Q ss_pred ------------CCCcchHHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHH-hcCCC
Q 043490 70 ------------KRNVVSWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALK-FSLDA 136 (589)
Q Consensus 70 ------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~-~g~~~ 136 (589)
+-+..+...-...+-+.|++++|+.+|+.+.++..+| +-.-+++-....+...-....+ ....|
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd---~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD---QDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 1122233333456678899999999999997762222 2222222221111111111111 12222
Q ss_pred c---hhHHHHHHHHHhc-CCHHHHHHHHhhCC--------CC--C---hhHHHHHHH---HHHcCCcHHHHHHHHHHcCC
Q 043490 137 H---VYVANALINMYSK-SCADEAWKVFENME--------FR--N---VISWNSMIA---AFRACKLEAQAIELFAKMKN 196 (589)
Q Consensus 137 ~---~~~~~~li~~y~~-g~~~~A~~lf~~m~--------~~--~---~~~~~~li~---~~~~~g~~~~a~~~~~~~g~ 196 (589)
+ ...||..- .+.. |++.+|.++++... +. + ...--..|. +| ++...|+
T Consensus 172 e~syel~yN~Ac-~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay-----------VlQ~~Gq 239 (652)
T KOG2376|consen 172 EDSYELLYNTAC-ILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY-----------VLQLQGQ 239 (652)
T ss_pred cchHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH-----------HHHHhcc
Confidence 1 22444433 3444 99999999998761 11 1 111111111 12 1278899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHhCcCcHHH--------------HHHHHHHHHHhCCCCcHHHHHHHHH
Q 043490 197 EEEALFLFRQLQREGMAPDWCTFSIVL---KACAGLVTERH--------------ASAVHSLIAKYGFEDDTVIANALIH 259 (589)
Q Consensus 197 ~~~A~~~~~~m~~~g~~p~~~t~~~ll---~a~~~~~~~~~--------------a~~i~~~~~~~g~~~~~~~~~~li~ 259 (589)
.++|.+++...++.. .+|........ .+.....++-. +......+.+ ........-+.++.
T Consensus 240 t~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK-KQKQAIYRNNALLA 317 (652)
T ss_pred hHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 999999999998875 44543222222 12221111111 1111111111 11122333345666
Q ss_pred HHHhcCCHHHHHHHHhhcCCCC-hhHHHHHHH-HHH-HcCCHHHHHHHHHhC-CCCCCH--HHHHHHHHHHhccCcHHHH
Q 043490 260 AYARCGSISLSKQVFDKMTYHD-LVSWNSILK-AYA-LHGQAKEALQLFSNM-NVQPDS--ATFVSLLSACSHAGLVQEG 333 (589)
Q Consensus 260 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~-~~~-~~g~~~~A~~~~~~m-~~~p~~--~t~~~ll~a~~~~g~~~~a 333 (589)
+|. +..+.+.+.-...+... ...+.+++. ++. +.....+|.+++... .-.|+. ......+......|+++.|
T Consensus 318 l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 318 LFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 655 45567777777776332 233344443 332 233577888888888 555654 3444555666789999999
Q ss_pred HHHHH--------HhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcC
Q 043490 334 NKVFH--------SMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM--------PMEPD-SVIWSVLLGSCRKHG 396 (589)
Q Consensus 334 ~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g 396 (589)
.+++. .+. .+.-.+.+...++.+|.+.++-+.|..++.+. .-.+. ..+|.-+...-.++|
T Consensus 396 ~~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 396 LEILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 99998 432 22234456778888999988877777766655 22222 334444445556789
Q ss_pred CHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHH
Q 043490 397 ETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEM 442 (589)
Q Consensus 397 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 442 (589)
+-++|...++++.+.+|+|..+...++.+|++. +.+.|..+-+.+
T Consensus 473 ~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999999999999999999999977 666776665443
No 74
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=9.7e-07 Score=82.31 Aligned_cols=405 Identities=13% Similarity=0.069 Sum_probs=203.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCCh
Q 043490 13 HACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK---RNVVSWTALISGYAQHGNA 89 (589)
Q Consensus 13 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~ 89 (589)
.-+...+|+..|..+++.-..... +....+---+...|...|++++|..++.-+.+ ++...|-.|.-.+.-.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~--EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDR--EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccch--hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 344455667777777765553311 12223333455566677777777777765442 4555565565555556666
Q ss_pred hHHHHHHHHHHhccCCCceeHHHHHHHhc--hhhH---HHHHHHHHHhcCCCchhHHHHHHHH-HhcCCHHHHHHHHhhC
Q 043490 90 EECFRLFCSLLQYFFPNEFSLASVLISCD--YLHG---KLVHALALKFSLDAHVYVANALINM-YSKSCADEAWKVFENM 163 (589)
Q Consensus 90 ~~A~~~~~~m~~~~~p~~~t~~~~l~a~~--~~~~---~~~~~~~~~~g~~~~~~~~~~li~~-y~~g~~~~A~~lf~~m 163 (589)
.+|..+-.... +...-..++-..+ +..- ...|..+ ......--+|.++ |.+-.+.+|..++.++
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~L-----qD~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSL-----QDTLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHH-----hhhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666544332 2222222222222 1111 1111111 1112222334444 3336678888888877
Q ss_pred CC--CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHH----
Q 043490 164 EF--RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASA---- 237 (589)
Q Consensus 164 ~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~---- 237 (589)
.. |+-...|.-+.-| |.+..-++-+.+++.--.+. ++-++...+.......+.=+-..|.+
T Consensus 178 L~dn~ey~alNVy~ALC------------yyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ 244 (557)
T KOG3785|consen 178 LQDNPEYIALNVYMALC------------YYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKE 244 (557)
T ss_pred HhcChhhhhhHHHHHHH------------HHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHH
Confidence 64 4445555444333 26666666666666554442 22222233322222122111111111
Q ss_pred ----------HHHHHHHhCC------------CCc-----HHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHH
Q 043490 238 ----------VHSLIAKYGF------------EDD-----TVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILK 290 (589)
Q Consensus 238 ----------i~~~~~~~g~------------~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 290 (589)
..+.+.++++ -|. +..--.|+--|.+.+++.+|..+.......++.-|-.-..
T Consensus 245 ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgv 324 (557)
T KOG3785|consen 245 LADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGV 324 (557)
T ss_pred HHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHH
Confidence 1111222110 010 1122234445677777777777777766444443332222
Q ss_pred HHHHcCC-------HHHHHHHHHhC---CCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHH
Q 043490 291 AYALHGQ-------AKEALQLFSNM---NVQPDSA-TFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDL 359 (589)
Q Consensus 291 ~~~~~g~-------~~~A~~~~~~m---~~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 359 (589)
.++..|+ ..-|...|+-. +..-|.. --.++.+++.-...+|+..-+++.+ +.+=...|...+ .+..+
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi-~sYF~NdD~Fn~-N~AQA 402 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI-ESYFTNDDDFNL-NLAQA 402 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCcchhhh-HHHHH
Confidence 2333332 34455555544 2222221 2233444455556677777777766 333333344333 46778
Q ss_pred HhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHH-HHHHHcCCHHHHHHHHHHHhhcC-CCChh-HHHHHHHHhhhcCChHH
Q 043490 360 LGRVGRILEAEKLIREMP-ME-PDSVIWSVLL-GSCRKHGETRLAELAATKLKQLE-PGDSL-GFVQMSNIYCLSGSFNK 434 (589)
Q Consensus 360 ~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~-p~~~~-~~~~l~~~~~~~g~~~~ 434 (589)
++..|.+.+|+++|-++. .+ .|..+|.+++ .+|.++|+++.|..++ ++.+ |.+.. ....+++-|.+++.+--
T Consensus 403 k~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 888888888988887772 11 3556665554 5667778888776654 3333 33332 33456677888888888
Q ss_pred HHHHHHHHhcCCC
Q 043490 435 ARLIRKEMKGSRV 447 (589)
Q Consensus 435 a~~~~~~m~~~~~ 447 (589)
|.+.|+.+...+.
T Consensus 480 aaKAFd~lE~lDP 492 (557)
T KOG3785|consen 480 AAKAFDELEILDP 492 (557)
T ss_pred HHHhhhHHHccCC
Confidence 8888888776543
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.8e-06 Score=80.94 Aligned_cols=272 Identities=13% Similarity=0.006 Sum_probs=200.3
Q ss_pred HhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCCCChhHHHHHH-HHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043490 131 KFSLDAHVYVANALINMYSK-SCADEAWKVFENMEFRNVISWNSMI-AAFRACKLEAQAIELFAKMKNEEEALFLFRQLQ 208 (589)
Q Consensus 131 ~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~ 208 (589)
+.-+..++....++...|.. |+.++|...|++...-|+.+-.+|= .++ ++.+.|+.++...+...+.
T Consensus 225 ~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~-----------LL~~eg~~e~~~~L~~~Lf 293 (564)
T KOG1174|consen 225 NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAV-----------LLGQEGGCEQDSALMDYLF 293 (564)
T ss_pred hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHH-----------HHHhccCHhhHHHHHHHHH
Confidence 44567788899999999999 9999999999987654444333321 111 1267788887777777665
Q ss_pred HcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHH
Q 043490 209 REGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSW 285 (589)
Q Consensus 209 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 285 (589)
... .-+...|-.-+.......+++.|..+-+..++.. +.+...+-.-...+...|+.++|.-.|+... .-+..+|
T Consensus 294 ~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y 371 (564)
T KOG1174|consen 294 AKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIY 371 (564)
T ss_pred hhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHH
Confidence 431 1222333333344456778888888888887765 4455556555677788999999999998766 3578899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHhHHhcCCccC-cchHHHHHHHH
Q 043490 286 NSILKAYALHGQAKEALQLFSNM-N-VQPDSATFVSLL-SACS-HAGLVQEGNKVFHSMLENHGVVPQ-LDHYACMVDLL 360 (589)
Q Consensus 286 ~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~ 360 (589)
.-++.+|...|+..+|.-+-+.. . ...+..++..+. ..|. ....-++|.++++.-. .+.|+ ....+.+...+
T Consensus 372 ~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~ 448 (564)
T KOG1174|consen 372 RGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELC 448 (564)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHH
Confidence 99999999999999999887776 3 333455555442 3333 2344578888887654 45664 33556777888
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhH
Q 043490 361 GRVGRILEAEKLIREM-PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLG 418 (589)
Q Consensus 361 ~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 418 (589)
.+.|..+++..++++. ...||...-+.|...++..+.+++|...|..++.++|.|..+
T Consensus 449 ~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 449 QVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 9999999999999988 668999999999999999999999999999999999977543
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=3e-08 Score=91.21 Aligned_cols=226 Identities=13% Similarity=0.034 Sum_probs=188.5
Q ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHH
Q 043490 217 CTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTY--H-DLVSWNSILKAYA 293 (589)
Q Consensus 217 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 293 (589)
.--+-+..+|.+.|.+..|...++..++. .|-+.+|..|-..|.+..+++.|+.+|..-.+ | |+.-..-+...+-
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH
Confidence 33456778889999999999999888876 45566777888999999999999999998763 3 5555556778888
Q ss_pred HcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHH
Q 043490 294 LHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEK 371 (589)
Q Consensus 294 ~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 371 (589)
..++.++|.++|+.. +..|+ ......+...|.-.++++.|.++++.+.+- |+ .+.+.|+.+.-.+.-.+++|-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 899999999999999 77764 446666777788889999999999998753 64 356788888888888999999999
Q ss_pred HHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 372 LIREM---PMEPD--SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 372 ~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
-|++. --.|+ ..+|-.|.......||+..|.+-|+..+..+|++..+++.|.-.-.+.|++++|..+++......
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 88877 22354 67898888888999999999999999999999999999999999999999999999999877543
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.96 E-value=1.3e-05 Score=80.85 Aligned_cols=401 Identities=13% Similarity=0.126 Sum_probs=239.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHH
Q 043490 8 YATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK---RNVVSWTALISGYA 84 (589)
Q Consensus 8 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 84 (589)
|-.++. |-..+.+..++...+.+++.+| ....+.....-.+...|+-++|......-.. .+.+.|.++.-.+-
T Consensus 11 F~~~lk-~yE~kQYkkgLK~~~~iL~k~~---eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 11 FRRALK-CYETKQYKKGLKLIKQILKKFP---EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHHhCC---ccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 334444 4466889999999999998765 4555555555556677999999988876554 46688999988888
Q ss_pred hCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhh-
Q 043490 85 QHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFEN- 162 (589)
Q Consensus 85 ~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~- 162 (589)
...++++|++.|+..... .||... .+.-|--.=++ |+++.....-..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~-~~dN~q------------------------------ilrDlslLQ~QmRd~~~~~~tr~~L 135 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKI-EKDNLQ------------------------------ILRDLSLLQIQMRDYEGYLETRNQL 135 (700)
T ss_pred hhhhHHHHHHHHHHHHhc-CCCcHH------------------------------HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 899999999999988764 333322 22211111122 333222222211
Q ss_pred --CCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHH------HHhCcCcHH
Q 043490 163 --MEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREG-MAPDWCTFSIVLK------ACAGLVTER 233 (589)
Q Consensus 163 --m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------a~~~~~~~~ 233 (589)
.....-..|..+..++ .-.|+...|..+.++..+.. -.|+...|.-... .....|..+
T Consensus 136 Lql~~~~ra~w~~~Avs~-------------~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q 202 (700)
T KOG1156|consen 136 LQLRPSQRASWIGFAVAQ-------------HLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQ 202 (700)
T ss_pred HHhhhhhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHH
Confidence 1223456777777777 77788888888877776643 2455554433222 224556666
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHH-HHHHHcCCHHHHH-HHHHhC-
Q 043490 234 HASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTY--HDLVSWNSIL-KAYALHGQAKEAL-QLFSNM- 308 (589)
Q Consensus 234 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m- 308 (589)
.|.+.+..-... +......-..-.+.+.+.+++++|..++..+.. ||...|+-.. .++.+--+.-+++ .+|...
T Consensus 203 ~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 203 KALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred HHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 666665443322 122233334556677888888888888888774 4444444333 3333232333333 444444
Q ss_pred CC-----CCC----------------------------HHHHHHHHHHHhccCcHHH----HHHHHHHhHHhcCC-----
Q 043490 309 NV-----QPD----------------------------SATFVSLLSACSHAGLVQE----GNKVFHSMLENHGV----- 346 (589)
Q Consensus 309 ~~-----~p~----------------------------~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~----- 346 (589)
.. .|- +.+|..+.+.+-.....+- +..+...+ ...|.
T Consensus 282 ~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L-~~~~~f~~~D 360 (700)
T KOG1156|consen 282 EKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSL-SGTGMFNFLD 360 (700)
T ss_pred hcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhc-ccccCCCccc
Confidence 11 110 0111222222211111111 11111111 11011
Q ss_pred -----ccCcc--hHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChh
Q 043490 347 -----VPQLD--HYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSL 417 (589)
Q Consensus 347 -----~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 417 (589)
+|... ++-.++..|-+.|+++.|+..++.. +-.|+ +.-|..=.+.+...|+++.|...++++.+++-.|..
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 23333 4456778889999999999999988 65677 556666668889999999999999999999976654
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHhcCCCc-----cCCceeeEEE
Q 043490 418 GFVQMSNIYCLSGSFNKARLIRKEMKGSRVR-----KYPGLSWIEI 458 (589)
Q Consensus 418 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-----~~~~~s~~~~ 458 (589)
.-.--++-..++.+.++|.++.......|.. .+..|.|..+
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhH
Confidence 4445566667899999999999888766642 1134677643
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.95 E-value=7e-08 Score=84.93 Aligned_cols=159 Identities=16% Similarity=0.156 Sum_probs=120.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhh
Q 043490 286 NSILKAYALHGQAKEALQLFSNM-NVQPDS-ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGR 362 (589)
Q Consensus 286 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 362 (589)
..+.-+|.+.|+...|..-+++. ...|+. .++..+...|.+.|..+.|.+.|+..+ .+.| +..+.|....-+|.
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHHHh
Confidence 34555666777777777777776 566654 366666677777777777777777665 3344 45566677777777
Q ss_pred cCCHHHHHHHHHhC---CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHH
Q 043490 363 VGRILEAEKLIREM---PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLI 438 (589)
Q Consensus 363 ~g~~~~A~~~~~~m---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 438 (589)
.|++++|...|++. |.-|. ..+|..+.-+..+.|+.+.|+..+++.++.+|+.+.+...+.....+.|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 77888888877777 22232 667888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCC
Q 043490 439 RKEMKGSRV 447 (589)
Q Consensus 439 ~~~m~~~~~ 447 (589)
++....++.
T Consensus 196 ~~~~~~~~~ 204 (250)
T COG3063 196 LERYQQRGG 204 (250)
T ss_pred HHHHHhccc
Confidence 998877665
No 79
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.87 E-value=2.2e-06 Score=87.03 Aligned_cols=204 Identities=16% Similarity=0.137 Sum_probs=95.5
Q ss_pred HHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHH
Q 043490 173 SMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTV 252 (589)
Q Consensus 173 ~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 252 (589)
+-|+-|+..+...+|++.-.....+.+|+.+++.++... .-.--|..+...|+..|+++.|.++|.+. .
T Consensus 724 aainhfiea~~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~ 792 (1636)
T KOG3616|consen 724 AAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------D 792 (1636)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------c
Confidence 334444444444445555555555555555555554432 12223445555556666666666555422 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 043490 253 IANALIHAYARCGSISLSKQVFDKMTYHD--LVSWNSILKAYALHGQAKEALQLFSNMNVQPDSATFVSLLSACSHAGLV 330 (589)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~g~~ 330 (589)
.++--|+||.+.|++++|.++-.+...|. +..|-+-..-+-.+|++.+|.++|-..| .|+. .|..|-+.|..
T Consensus 793 ~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~-----aiqmydk~~~~ 866 (1636)
T KOG3616|consen 793 LFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDK-----AIQMYDKHGLD 866 (1636)
T ss_pred hhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchH-----HHHHHHhhCcc
Confidence 23344556666666666666555554332 2334444444555566655555554432 2322 23444455555
Q ss_pred HHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043490 331 QEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAEL 403 (589)
Q Consensus 331 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~ 403 (589)
+...++...- +| ..-..+...+..-|-..|++..|+..|-+.+ -|.+-+..|...+-+++|-+
T Consensus 867 ddmirlv~k~---h~-d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayr 929 (1636)
T KOG3616|consen 867 DDMIRLVEKH---HG-DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYR 929 (1636)
T ss_pred hHHHHHHHHh---Ch-hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHH
Confidence 5555444321 01 1111233344445555556666555554432 23334444444444444433
No 80
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=2.1e-07 Score=85.73 Aligned_cols=217 Identities=12% Similarity=0.060 Sum_probs=145.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHH
Q 043490 77 TALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADE 155 (589)
Q Consensus 77 ~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~ 155 (589)
+.|..+|.+.|.+.+|.+.|+.-+.. .|-+.+|--|-..|.+ .+.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--------------------------------~~~~dTfllLskvY~ridQP~~ 274 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--------------------------------FPHPDTFLLLSKVYQRIDQPER 274 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--------------------------------CCchhHHHHHHHHHHHhccHHH
Confidence 46777888888888888888776655 3444555566677888 88888
Q ss_pred HHHHHhhCCC--CChhHH-HHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcH
Q 043490 156 AWKVFENMEF--RNVISW-NSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTE 232 (589)
Q Consensus 156 A~~lf~~m~~--~~~~~~-~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 232 (589)
|..+|.+-.+ |-.+|| ..+...+ ..+++.++|+++|+...+.. +.+.....++...|.-.++.
T Consensus 275 AL~~~~~gld~fP~~VT~l~g~ARi~-------------eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~P 340 (478)
T KOG1129|consen 275 ALLVIGEGLDSFPFDVTYLLGQARIH-------------EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNP 340 (478)
T ss_pred HHHHHhhhhhcCCchhhhhhhhHHHH-------------HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCCh
Confidence 8888877654 444444 3344555 67778888888888776642 33455666666667777888
Q ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCh--hHHHHHHHHHHHcCCHHHHHHHHH
Q 043490 233 RHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT----YHDL--VSWNSILKAYALHGQAKEALQLFS 306 (589)
Q Consensus 233 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~--~~~~~li~~~~~~g~~~~A~~~~~ 306 (589)
+.|...++.+++.|+ .+...|+.+.-.+.-.+++|.++..|++.. .++. ..|..+.......|+..-|.+.|+
T Consensus 341 E~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfr 419 (478)
T KOG1129|consen 341 EMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFR 419 (478)
T ss_pred HHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHH
Confidence 888888888888884 466677777777777778887777776654 2332 356666666666666666666666
Q ss_pred hC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 043490 307 NM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSM 340 (589)
Q Consensus 307 ~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 340 (589)
-. .-.| +...++.|.-.-.+.|++++|+.+++..
T Consensus 420 laL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 420 LALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 65 3333 3346666665556666666666666655
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.80 E-value=1.3e-06 Score=77.12 Aligned_cols=187 Identities=15% Similarity=0.137 Sum_probs=101.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhccCcH
Q 043490 256 ALIHAYARCGSISLSKQVFDKMTYH---DLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDS-ATFVSLLSACSHAGLV 330 (589)
Q Consensus 256 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~t~~~ll~a~~~~g~~ 330 (589)
.|.-.|...|+...|.+-+++..+. +..+|..+...|-+.|+.+.|.+.|++. .+.|+. ...|....-+|..|.+
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 3444556666666666666655522 2245555556666666666666666665 555532 3444555555555666
Q ss_pred HHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043490 331 QEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKL 408 (589)
Q Consensus 331 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 408 (589)
++|...|+.........--..+|..+.-+..++|+++.|.+.|++. ...|+ ..+...+.....+.|++-.|...+++.
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 6666666655443222223345555555555666666666666555 33333 444455555555666666666666665
Q ss_pred hhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHH
Q 043490 409 KQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEM 442 (589)
Q Consensus 409 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 442 (589)
....+....+....+.+-...|+-+.+.+.=..+
T Consensus 200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5554445555555555555566655555544433
No 82
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.79 E-value=2.1e-05 Score=73.37 Aligned_cols=312 Identities=15% Similarity=0.125 Sum_probs=192.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHH---HHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHH
Q 043490 40 QDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALI---SGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLIS 116 (589)
Q Consensus 40 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a 116 (589)
.++.-.--|.+.+...|++.+|+.-|....+-|+..|-++. ..|...|+...|+.=|.+.++. +||
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-KpD---------- 104 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-KPD---------- 104 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-Ccc----------
Confidence 34444455666677778888888888888777777776664 4567777777777766666553 333
Q ss_pred hchhhHHHHHHHHHHhcCCCchhHHH-HHHHHHhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHc
Q 043490 117 CDYLHGKLVHALALKFSLDAHVYVAN-ALINMYSK-SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKM 194 (589)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~~~~~~~~~-~li~~y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 194 (589)
-.... ---..+.+ |.++.|..=|+.+.+.++. -+....++ .+.
T Consensus 105 ---------------------F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s-~~~~~eaq-------------skl 149 (504)
T KOG0624|consen 105 ---------------------FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPS-NGLVLEAQ-------------SKL 149 (504)
T ss_pred ---------------------HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCC-cchhHHHH-------------HHH
Confidence 11100 11134566 8888888777776542210 00111111 111
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 043490 195 KNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVF 274 (589)
Q Consensus 195 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 274 (589)
-..++ + ......+..+...|+...++.....+++.. +.|...+..-..+|...|++..|..-+
T Consensus 150 ~~~~e-------~---------~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dl 212 (504)
T KOG0624|consen 150 ALIQE-------H---------WVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDL 212 (504)
T ss_pred HhHHH-------H---------HHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 11111 1 122334455567788888888888888775 678888888889999999999887766
Q ss_pred hhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH-HH---HH---H------HHHhccCcHHHHHHHH
Q 043490 275 DKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDSAT-FV---SL---L------SACSHAGLVQEGNKVF 337 (589)
Q Consensus 275 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t-~~---~l---l------~a~~~~g~~~~a~~~~ 337 (589)
.... ..+.....-+-..+...|+.+.++...++- .+.||... |. .| . ......+++.++.+-.
T Consensus 213 k~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~g 292 (504)
T KOG0624|consen 213 KQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAG 292 (504)
T ss_pred HHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5544 556667777777888889999999888888 88888642 21 11 1 1122345555555555
Q ss_pred HHhHHhcCCccC-----cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 043490 338 HSMLENHGVVPQ-----LDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQ 410 (589)
Q Consensus 338 ~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 410 (589)
+...+. .|. ...+..+-..|...|++-+|++.-.+. .+.|| +.++.--..+|.-...++.|+.-|+++.+
T Consensus 293 e~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 293 EKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 554432 232 123344455566667777777766665 55555 66666666777777777777777777777
Q ss_pred cCCCChh
Q 043490 411 LEPGDSL 417 (589)
Q Consensus 411 ~~p~~~~ 417 (589)
.++++..
T Consensus 370 ~n~sn~~ 376 (504)
T KOG0624|consen 370 LNESNTR 376 (504)
T ss_pred cCcccHH
Confidence 7766544
No 83
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=1.8e-05 Score=72.42 Aligned_cols=283 Identities=13% Similarity=0.095 Sum_probs=161.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCcchHHH-HHHHHH
Q 043490 8 YATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--RNVVSWTA-LISGYA 84 (589)
Q Consensus 8 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~ 84 (589)
+.+.+..+.+..++..|.++...-.+..| .+....+.|...|-...++..|-..++++.. |...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p---~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP---RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 44555555666677777777766555433 4556666666677777777777777776653 33333322 234455
Q ss_pred hCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 043490 85 QHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSKSCADEAWKVFENME 164 (589)
Q Consensus 85 ~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~g~~~~A~~lf~~m~ 164 (589)
+.+.+.+|+++...|... ..++...++. .+. -.|..+++..++.+.++.+
T Consensus 90 ~A~i~ADALrV~~~~~D~--------------------~~L~~~~lqL---------qaA-IkYse~Dl~g~rsLveQlp 139 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN--------------------PALHSRVLQL---------QAA-IKYSEGDLPGSRSLVEQLP 139 (459)
T ss_pred HhcccHHHHHHHHHhcCC--------------------HHHHHHHHHH---------HHH-HhcccccCcchHHHHHhcc
Confidence 667777777777666542 0111111100 000 1233477777888888877
Q ss_pred C-CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Q 043490 165 F-RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIA 243 (589)
Q Consensus 165 ~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 243 (589)
. .+..+-+...-.. -+.|++++|++-|+...+-+--.....|+..+.. .+.++.+.|.....+++
T Consensus 140 ~en~Ad~~in~gCll-------------ykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 140 SENEADGQINLGCLL-------------YKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEII 205 (459)
T ss_pred CCCccchhccchhee-------------eccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHH
Confidence 3 4444433333233 6778888888888877664433345567766644 45677888888888887
Q ss_pred HhCCCC-------------c---------------HHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHH
Q 043490 244 KYGFED-------------D---------------TVIANALIHAYARCGSISLSKQVFDKMTY-----HDLVSWNSILK 290 (589)
Q Consensus 244 ~~g~~~-------------~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~ 290 (589)
++|++. | +..+|.-...+.+.|+.+.|.+.+-.|+. -|++|...+.-
T Consensus 206 eRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al 285 (459)
T KOG4340|consen 206 ERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL 285 (459)
T ss_pred HhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH
Confidence 776532 1 11122223345566777777777777763 35555554432
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 043490 291 AYALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFH 338 (589)
Q Consensus 291 ~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 338 (589)
.-. .+++.+..+-++-+ ++.|- ..||..++-.||+..-++.|-.++.
T Consensus 286 ~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 286 MNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred hcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 211 23333333333333 45553 3577777777777777777766654
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.77 E-value=4e-06 Score=86.38 Aligned_cols=262 Identities=12% Similarity=0.087 Sum_probs=179.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC----
Q 043490 191 FAKMKNEEEALFLFRQLQREGMAPDWC-TFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCG---- 265 (589)
Q Consensus 191 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g---- 265 (589)
+...|++++|++.+.+-.. ..+|.. .+......+.+.|+.++|..++..+++.+ |.+..-|..|..+..-..
T Consensus 14 l~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccc
Confidence 3788999999999977544 345554 45556667799999999999999999997 666667777777663332
Q ss_pred -CHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCCHHH-HHHHHHhC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 043490 266 -SISLSKQVFDKMTY--HDLVSWNSILKAYALHGQAKE-ALQLFSNM---NVQPDSATFVSLLSACSHAGLVQEGNKVFH 338 (589)
Q Consensus 266 -~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~-A~~~~~~m---~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 338 (589)
+.+....+|+++.. |...+...+.-.+.....+.. +...+..+ |++ .+|+.|-..|......+-..+++.
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHH
Confidence 56777788887752 221222122222222222222 22333333 543 345555555555555555555555
Q ss_pred HhHHhc---C-C---------ccCcc--hHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 043490 339 SMLENH---G-V---------VPQLD--HYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLA 401 (589)
Q Consensus 339 ~~~~~~---~-~---------~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a 401 (589)
...... + + .|... ++..+...|-..|++++|++++++. ...|+ +..|..-...+.+.|++++|
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 543321 1 1 12222 4456678889999999999999987 66777 77888888999999999999
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCccCC-----ceeeEEE
Q 043490 402 ELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVRKYP-----GLSWIEI 458 (589)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~s~~~~ 458 (589)
....+.+.++++.|...-+-.+..+.++|+.++|.+++......+..+.. .+.|.++
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 99999999999989888888889999999999999999998877753332 3567653
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=2e-07 Score=92.59 Aligned_cols=216 Identities=13% Similarity=0.080 Sum_probs=173.3
Q ss_pred hCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCCHHHHHH
Q 043490 227 AGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTY---HDLVSWNSILKAYALHGQAKEALQ 303 (589)
Q Consensus 227 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 303 (589)
.+.|++.+|.-.|+..++.. |.+...|.-|.......++-..|+..+.+..+ .|....-+|...|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 56788888888888888776 77888898898888888888888888888763 355677778888899999889998
Q ss_pred HHHhC-CCCCCHH---------HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHH
Q 043490 304 LFSNM-NVQPDSA---------TFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLI 373 (589)
Q Consensus 304 ~~~~m-~~~p~~~---------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 373 (589)
.++.- ...|-.. .+..- ........+....++|-.+....+.++|..++..|.-.|--.|.+++|.+-|
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~-~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT-KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC-cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 88776 2221100 00000 1222334455667777777666676688889999999999999999999999
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 374 REM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 374 ~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
+.+ .++|+ ...||-|...++...+.++|+..|++++++.|.-..+...|.-.|...|.+++|.+.|-....
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 988 77885 889999999999999999999999999999999999999999999999999999998876553
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.75 E-value=2.2e-07 Score=89.08 Aligned_cols=242 Identities=11% Similarity=-0.008 Sum_probs=157.6
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSK 271 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 271 (589)
.-.|++..++.-.+ .....-..+..+...+.+++...|..+.+ ...+.+.. .|.......+...+...++-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34577777765444 22221122334455666777777776543 33443433 666666655554444335566666
Q ss_pred HHHhhcC-CC---ChhHHHH-HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 043490 272 QVFDKMT-YH---DLVSWNS-ILKAYALHGQAKEALQLFSNMNVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGV 346 (589)
Q Consensus 272 ~~~~~~~-~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 346 (589)
.-++... .+ +-.++.. ....+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|. .+
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQ---QI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hc
Confidence 6665443 22 1122222 223455679999999888764 445666777888999999999999999985 33
Q ss_pred ccCcchHHHHHHHHh----hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHH
Q 043490 347 VPQLDHYACMVDLLG----RVGRILEAEKLIREM--PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFV 420 (589)
Q Consensus 347 ~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 420 (589)
..| .+...+..++. -.+.+.+|..+|+++ ...+++.+.+.+..+....|++++|+.++++..+.+|.++.+..
T Consensus 161 ~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 161 DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 344 33444444433 334799999999999 44578889999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCh-HHHHHHHHHHhcC
Q 043490 421 QMSNIYCLSGSF-NKARLIRKEMKGS 445 (589)
Q Consensus 421 ~l~~~~~~~g~~-~~a~~~~~~m~~~ 445 (589)
.++-+....|+. +.+.+.+..++..
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999998 6678888887753
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.72 E-value=0.00019 Score=74.18 Aligned_cols=391 Identities=17% Similarity=0.144 Sum_probs=234.9
Q ss_pred CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCcchHH
Q 043490 2 LHSTQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK----RNVVSWT 77 (589)
Q Consensus 2 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~ 77 (589)
.-|+..|..|-=+....|+++.+-+.|++.....- .....|+.+...|..+|.-..|..+.++-.. |+..+--
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~---~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF---GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 45778888888888999999999999999887622 4677899999999999999999999986542 3333333
Q ss_pred HHHH-HHH-hCCChhHHHHHHHHHHhc-------cCCCceeHHHHHHHhc-------------hhhHHHHHHHHHHhc-C
Q 043490 78 ALIS-GYA-QHGNAEECFRLFCSLLQY-------FFPNEFSLASVLISCD-------------YLHGKLVHALALKFS-L 134 (589)
Q Consensus 78 ~li~-~~~-~~g~~~~A~~~~~~m~~~-------~~p~~~t~~~~l~a~~-------------~~~~~~~~~~~~~~g-~ 134 (589)
.|+. .|. +.+..++++..-.+.... ..|-..-+..+-.... -..+.+..+.+++.+ -
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3332 233 346667766665555542 3333322222211111 122333333343333 2
Q ss_pred CCchhHHHHHHHHHhc-CCHHHHHHHHhhCC----CCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043490 135 DAHVYVANALINMYSK-SCADEAWKVFENME----FRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQR 209 (589)
Q Consensus 135 ~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~ 209 (589)
+|++..|-++ -|+. ++++.|.....+.. .-+...|.-+.-.+ ...+++.+|+.+.+....
T Consensus 477 dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvl-------------Sa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 477 DPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVL-------------SAQKRLKEALDVVDAALE 541 (799)
T ss_pred CchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHH-------------hhhhhhHHHHHHHHHHHH
Confidence 3433333333 3556 88888877766543 45788999888888 444555555554443322
Q ss_pred c-CC------------------CCCHHHHHHHHHHHhCcCcHHHHHHHHHHHH----HhCC-------CCcHHHHHHHHH
Q 043490 210 E-GM------------------APDWCTFSIVLKACAGLVTERHASAVHSLIA----KYGF-------EDDTVIANALIH 259 (589)
Q Consensus 210 ~-g~------------------~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~----~~g~-------~~~~~~~~~li~ 259 (589)
. |. .--..|...++..+-..-. +.+..++.. +.|+ .....++..+..
T Consensus 542 E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~---~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 542 EFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYG---VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhh---HhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 1 10 0001122222222111100 000000110 1111 111223332222
Q ss_pred HHH---hcCCHHHHHHHHhhcCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccC
Q 043490 260 AYA---RCGSISLSKQVFDKMTYHD------LVSWNSILKAYALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAG 328 (589)
Q Consensus 260 ~~~---~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g 328 (589)
... +.-..+.....+...+.|+ ...|......+.+.+..++|...+.+. ++.|- ...|......+...|
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH
Confidence 221 1111112222222222333 235667777888999999999999888 77764 446666667777889
Q ss_pred cHHHHHHHHHHhHHhcCCccC-cchHHHHHHHHhhcCCHHHHHH--HHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 043490 329 LVQEGNKVFHSMLENHGVVPQ-LDHYACMVDLLGRVGRILEAEK--LIREM-PMEPD-SVIWSVLLGSCRKHGETRLAEL 403 (589)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~ 403 (589)
..++|.+.|.... -+.|+ +....++..++.+.|+..-|.. ++..+ .+.|+ ...|-.+...+.+.|+.+.|..
T Consensus 699 ~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 699 QLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred hhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 9999999998765 56774 5578889999999998777766 88777 66775 8999999999999999999999
Q ss_pred HHHHHhhcCCCCh
Q 043490 404 AATKLKQLEPGDS 416 (589)
Q Consensus 404 ~~~~~~~~~p~~~ 416 (589)
.|....++++.+|
T Consensus 776 cf~aa~qLe~S~P 788 (799)
T KOG4162|consen 776 CFQAALQLEESNP 788 (799)
T ss_pred HHHHHHhhccCCC
Confidence 9999999886554
No 88
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=7.7e-05 Score=77.23 Aligned_cols=360 Identities=13% Similarity=0.134 Sum_probs=211.0
Q ss_pred ChhHHHHHHH--HHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhc----------cCCCce
Q 043490 41 DLFVTNHLIN--MYAKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHGNAEECFRLFCSLLQY----------FFPNEF 108 (589)
Q Consensus 41 ~~~~~~~li~--~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------~~p~~~ 108 (589)
|..+-.++++ .|..-|++|.|.+-.+-+. +-..|..|.+.+++..+.+-|.-.+-.|... ..|+..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 4444444443 3444566666655554443 3345666666666655555554444444221 112211
Q ss_pred eH-HHHHHH-hc-hhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCCC-ChhHHHHHHHHHHcCCc
Q 043490 109 SL-ASVLIS-CD-YLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFENMEFR-NVISWNSMIAAFRACKL 183 (589)
Q Consensus 109 t~-~~~l~a-~~-~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~~-~~~~~~~li~~~~~~g~ 183 (589)
.- .++|.. .. ++.++.++....+. ..|=..|.. |.+++|.++-+.=..- =-.||..-..-+-.+++
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhcc
Confidence 11 111111 11 55555555554433 233345666 9999998876543321 11345555555666788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHH
Q 043490 184 EAQAIELFAKMKNEEEALFLFRQLQRE--------GMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIAN 255 (589)
Q Consensus 184 ~~~a~~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 255 (589)
.+.|++.|.+.|.. |.++++-+.+. .-..|...|.....-....|+.+.|..+|..+.. |-
T Consensus 874 i~~AleyyEK~~~h--afev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVH--AFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred HHHHHHHHHhcCCh--HHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 99999999888754 34444333221 1134556666677777888999999999987654 44
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------
Q 043490 256 ALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNMNVQPDSATFVSLLSACSHA-------- 327 (589)
Q Consensus 256 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~-------- 327 (589)
+++...+-.|+.++|-++-++ ..|..+...+...|-..|++.+|...|.+. .+|...|+.|-..
T Consensus 943 s~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA------qafsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRA------QAFSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred hheeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHH------HHHHHHHHHHHhcCHHHHHHH
Confidence 667777778999988887765 356777778889999999999999999876 3344444333322
Q ss_pred -------CcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-----------CC--CCCHHHHHH
Q 043490 328 -------GLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-----------PM--EPDSVIWSV 387 (589)
Q Consensus 328 -------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----------~~--~p~~~~~~~ 387 (589)
.+.-.|-++|++. |.. ...-+..|-++|.+.+|+++-=+- .+ ..|+...+.
T Consensus 1015 lal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 2334455555543 211 223456788888888888763221 12 235666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhh----------------------cCCC-----C----hhHHHHHHHHhhhcCChHHHH
Q 043490 388 LLGSCRKHGETRLAELAATKLKQ----------------------LEPG-----D----SLGFVQMSNIYCLSGSFNKAR 436 (589)
Q Consensus 388 ll~~~~~~g~~~~a~~~~~~~~~----------------------~~p~-----~----~~~~~~l~~~~~~~g~~~~a~ 436 (589)
-..-+..+.++++|..++-...+ +.|. + ......++..|.++|.+..|-
T Consensus 1086 cadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~At 1165 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAAT 1165 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHH
Confidence 66666777777777666543321 1111 1 234667888899999888776
Q ss_pred HHH
Q 043490 437 LIR 439 (589)
Q Consensus 437 ~~~ 439 (589)
+-|
T Consensus 1166 KKf 1168 (1416)
T KOG3617|consen 1166 KKF 1168 (1416)
T ss_pred HHH
Confidence 655
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=0.00014 Score=72.21 Aligned_cols=388 Identities=13% Similarity=0.030 Sum_probs=216.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-cchHHHHHHHHHhCCCh
Q 043490 13 HACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--RN-VVSWTALISGYAQHGNA 89 (589)
Q Consensus 13 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~ 89 (589)
.+....|+++.|...|...+...| ++...|+.-..+|++.|++++|.+=-.+-.+ |+ .-.|+-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p---~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP---TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC---CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 455678999999999999998777 8999999999999999999998875555443 44 34788899999999999
Q ss_pred hHHHHHHHHHHhccCCCceeHHHHHHHhchhh-------HHHHHHHHH----HhcCCCchhHHHHHHHHH----------
Q 043490 90 EECFRLFCSLLQYFFPNEFSLASVLISCDYLH-------GKLVHALAL----KFSLDAHVYVANALINMY---------- 148 (589)
Q Consensus 90 ~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~-------~~~~~~~~~----~~g~~~~~~~~~~li~~y---------- 148 (589)
++|+.-|.+-++....|...+..+..+..... .-.+|.-+. ..+.. ....|..++..+
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~-~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSL-SDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhh-ccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999887753333333333333332000 000111000 00000 001112222211
Q ss_pred hc-CCHHHHHHHHhhCC----------------CC------------Ch----------hHHHHHHHHHHcCCcHHHHHH
Q 043490 149 SK-SCADEAWKVFENME----------------FR------------NV----------ISWNSMIAAFRACKLEAQAIE 189 (589)
Q Consensus 149 ~~-g~~~~A~~lf~~m~----------------~~------------~~----------~~~~~li~~~~~~g~~~~a~~ 189 (589)
.. .++..|...+.... .| |. .-.-.+.++.
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa----------- 234 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA----------- 234 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH-----------
Confidence 11 11222222221110 01 00 0011222222
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHH-------HHHHHHHH
Q 043490 190 LFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIA-------NALIHAYA 262 (589)
Q Consensus 190 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~-------~~li~~~~ 262 (589)
-+..++..|++-+....... -+..-++..-.++...|........-...++.|-. ...-| ..+...|.
T Consensus 235 --ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 235 --YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYT 309 (539)
T ss_pred --HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhh
Confidence 44455566666666555432 22223333344456666555555554444444411 11111 12334666
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHh
Q 043490 263 RCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDSA-TFVSLLSACSHAGLVQEGNKVFHSM 340 (589)
Q Consensus 263 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~ 340 (589)
+.++++.|...|.+...+... -....+....++++...+.. -+.|+.. -.-.-.+.+.+.|++..|.+.|.++
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 667777777777765421110 01112233445555555544 4444432 1222355677788888888888888
Q ss_pred HHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhH
Q 043490 341 LENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLG 418 (589)
Q Consensus 341 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 418 (589)
+++. +-|...|....-+|.+.|.+..|++-.+.. ...|+ ...|..=..++....+++.|.+.|++.++.+|.+...
T Consensus 385 Ikr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 385 IKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred HhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 7642 336778888888888888888888766555 44555 4455555566666678888888888888888876655
Q ss_pred HHHHHHHhh
Q 043490 419 FVQMSNIYC 427 (589)
Q Consensus 419 ~~~l~~~~~ 427 (589)
...+.+++.
T Consensus 463 ~~~~~rc~~ 471 (539)
T KOG0548|consen 463 IDGYRRCVE 471 (539)
T ss_pred HHHHHHHHH
Confidence 444444443
No 90
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=0.00012 Score=68.66 Aligned_cols=414 Identities=15% Similarity=0.133 Sum_probs=224.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhH
Q 043490 12 FHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHGNAEE 91 (589)
Q Consensus 12 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 91 (589)
...+-..|++++|...+..+..... ++..++-.|.-.+.-.|.+.+|..+-.+.++ ++..-..|...--+.|+-++
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~---~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDD---APAELGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCC---CCcccchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHH
Confidence 3455588999999999998887633 5666777777777778999999998887763 11111122222223333333
Q ss_pred HHHHHHHHHhccCCCceeHHHHHHHhc-hhhHHHHHHHHHHhcCCCchhHHHHH-HHHHhc-CCHHHHHHHHhhCCC--C
Q 043490 92 CFRLFCSLLQYFFPNEFSLASVLISCD-YLHGKLVHALALKFSLDAHVYVANAL-INMYSK-SCADEAWKVFENMEF--R 166 (589)
Q Consensus 92 A~~~~~~m~~~~~p~~~t~~~~l~a~~-~~~~~~~~~~~~~~g~~~~~~~~~~l-i~~y~~-g~~~~A~~lf~~m~~--~ 166 (589)
-..+-..+... ..|..+..++-..-. .+++-.+...++.. .|+-...|.- .-+|.| .-++-+.++++--.+ |
T Consensus 140 ~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p 216 (557)
T KOG3785|consen 140 ILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP 216 (557)
T ss_pred HHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC
Confidence 32222222211 111111111111111 22233333332221 1222222221 123444 444444444433221 2
Q ss_pred C-hhHHHHHHHHHHc--CCcHHHH-HHHHHHc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043490 167 N-VISWNSMIAAFRA--CKLEAQA-IELFAKM-------------------KNEEEALFLFRQLQREGMAPDWCTFSIVL 223 (589)
Q Consensus 167 ~-~~~~~~li~~~~~--~g~~~~a-~~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 223 (589)
| +..-|.......+ .|+..++ .+-++.+ ..-+.|++++-.+... .|.. -..++
T Consensus 217 dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~ 292 (557)
T KOG3785|consen 217 DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLI 292 (557)
T ss_pred CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhhe
Confidence 2 1222222111111 1111111 0111111 2345667666555442 2322 22334
Q ss_pred HHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH-----HHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHH
Q 043490 224 KACAGLVTERHASAVHSLIAKYGFEDDTVIANALIH-----AYARCGSISLSKQVFDKMTY-----HDLVSWNSILKAYA 293 (589)
Q Consensus 224 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~-----~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~ 293 (589)
--+.+.+++.+|..+.+.+.- ..|-..+...++. -......+.-|.+.|+-.-+ .++.--.+|.+.+.
T Consensus 293 iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred eeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 456788999999887765421 1222222222222 22222335667777776542 23345667888888
Q ss_pred HcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCc-cCcchHHH-HHHHHhhcCCHHHH
Q 043490 294 LHGQAKEALQLFSNM-N-VQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVV-PQLDHYAC-MVDLLGRVGRILEA 369 (589)
Q Consensus 294 ~~g~~~~A~~~~~~m-~-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~-li~~~~~~g~~~~A 369 (589)
-..++++.+-.+... . ...|..--..+..|.+..|.+.+|+++|-.+. |.+ .|..+|.+ |...|.+++..+-|
T Consensus 371 L~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is---~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS---GPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc---ChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 888899999888887 2 22233333357789999999999999997763 322 34556654 56789999999999
Q ss_pred HHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCc
Q 043490 370 EKLIREMPMEPDSVIWS-VLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVR 448 (589)
Q Consensus 370 ~~~~~~m~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 448 (589)
.+++-++.-..+..+.- .+..-|.+.+.+--|-+.|..+..++| ++..| .|+-....-+|..+..+.-+
T Consensus 448 W~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnW---------eGKRGACaG~f~~l~~~~~~ 517 (557)
T KOG3785|consen 448 WDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-TPENW---------EGKRGACAGLFRQLANHKTD 517 (557)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-Ccccc---------CCccchHHHHHHHHHcCCCC
Confidence 99999986334444443 445679999999999999999999998 44433 34444455666666555444
Q ss_pred cCC
Q 043490 449 KYP 451 (589)
Q Consensus 449 ~~~ 451 (589)
|.|
T Consensus 518 ~~p 520 (557)
T KOG3785|consen 518 PIP 520 (557)
T ss_pred CCc
Confidence 444
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.67 E-value=4.2e-05 Score=77.04 Aligned_cols=253 Identities=11% Similarity=0.014 Sum_probs=159.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCTFSI---VLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSIS 268 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 268 (589)
...|++++|.+++++..+.. +.|...+.. ........+..+.+.+.+.. .....+........+...+...|+++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~ 131 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYD 131 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHH
Confidence 77899999999999988753 223334332 11111224455555555544 11122333445556777889999999
Q ss_pred HHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CH--HHHHHHHHHHhccCcHHHHHHHHHH
Q 043490 269 LSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQP---DS--ATFVSLLSACSHAGLVQEGNKVFHS 339 (589)
Q Consensus 269 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~--~t~~~ll~a~~~~g~~~~a~~~~~~ 339 (589)
+|...+++.. ..+...+..+...|...|++++|+..+++. ...| +. ..|..+...+...|++++|..+++.
T Consensus 132 ~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 132 RAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999887 345677888899999999999999999998 4333 32 2355677788899999999999998
Q ss_pred hHHhcCCccCcchH-H--HHHHHHhhcCCHHHHHHH---HHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 043490 340 MLENHGVVPQLDHY-A--CMVDLLGRVGRILEAEKL---IREM-PMEP---DSVIWSVLLGSCRKHGETRLAELAATKLK 409 (589)
Q Consensus 340 ~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 409 (589)
........+..... + .++..+...|..+.+.++ .... +..| ..........++...|+.+.|...++.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 212 HIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALK 291 (355)
T ss_pred HhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 74321111111111 1 223333344433222222 1111 1101 12222356677788899999999998886
Q ss_pred hcCC---------CChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 410 QLEP---------GDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 410 ~~~p---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
.... ...........++...|++++|.+.+.......
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 292 GRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5321 123445566777889999999999999887644
No 92
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.66 E-value=1.7e-06 Score=93.81 Aligned_cols=199 Identities=13% Similarity=0.135 Sum_probs=169.1
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHH
Q 043490 248 EDDTVIANALIHAYARCGSISLSKQVFDKMTY--------HDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDSATFV 318 (589)
Q Consensus 248 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~ 318 (589)
|.+...|-..|......+++++|++++++... --...|.+++..-...|.-+...++|++. ..---...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 55677888888888999999999999988762 12357888888888888888999999999 4443445788
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHH
Q 043490 319 SLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP---DSVIWSVLLGSCRK 394 (589)
Q Consensus 319 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~ 394 (589)
.|...|.+.+..++|.++++.|.++++ -...+|...++.+.+..+-+.|..+++++ ..-| ......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999887 45668999999999999999999999887 3233 35556666677789
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCc
Q 043490 395 HGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVR 448 (589)
Q Consensus 395 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 448 (589)
+|+.+++..+|+..+.-.|.-...|...+++-.+.|+.+.++.+|++....++.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999988774
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.64 E-value=0.00011 Score=75.22 Aligned_cols=236 Identities=14% Similarity=0.114 Sum_probs=165.1
Q ss_pred cCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 043490 180 ACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIH 259 (589)
Q Consensus 180 ~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 259 (589)
..|-+.+.-+-|+..|+++.|.++|.+.- .++-.|..|.+.|.|+.|.++-.+. .|-+...+.|-+-..
T Consensus 764 ~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakae 832 (1636)
T KOG3616|consen 764 ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAE 832 (1636)
T ss_pred ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHH
Confidence 34445555555788899999999986532 3556788899999999998876544 343455667777777
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHH
Q 043490 260 AYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNMNVQPD--SATFVSLLSACSHAGLVQEGNKVF 337 (589)
Q Consensus 260 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~--~~t~~~ll~a~~~~g~~~~a~~~~ 337 (589)
-.-+.|++.+|.++|-.+..|+. -|..|-++|..+..+++.++- .|+ ..|-..+..-+...|++..|.+.|
T Consensus 833 dldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~--h~d~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 833 DLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH--HGDHLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred hHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh--ChhhhhHHHHHHHHHHHhccChhHHHHHH
Confidence 78889999999999999988886 477899999999999998886 333 345666777788899999999888
Q ss_pred HHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-----HHHHHHH------HHHHHHcCCHHHHHH---
Q 043490 338 HSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPMEPD-----SVIWSVL------LGSCRKHGETRLAEL--- 403 (589)
Q Consensus 338 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-----~~~~~~l------l~~~~~~g~~~~a~~--- 403 (589)
-+.. -|.+-+++|-..+.+++|.++-+.-+ ..| ...|.-- +..+-++|-.+.|+.
T Consensus 906 lea~----------d~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~ 974 (1636)
T KOG3616|consen 906 LEAG----------DFKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAA 974 (1636)
T ss_pred Hhhh----------hHHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhh
Confidence 6542 36677899999999999999887653 112 2233211 222344444444433
Q ss_pred ----------HHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 404 ----------AATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 404 ----------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
+.+...+- .-+.+..-+..-+...|++++|.+-+-+..+.+
T Consensus 975 d~~afd~afdlari~~k~--k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 975 DNCAFDFAFDLARIAAKD--KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred cccchhhHHHHHHHhhhc--cCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 32222221 123456667777888999999988877666544
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.62 E-value=2.1e-06 Score=82.38 Aligned_cols=245 Identities=13% Similarity=0.104 Sum_probs=161.8
Q ss_pred CCHHHHHHHHhhCC-CC--ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043490 151 SCADEAWKVFENME-FR--NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACA 227 (589)
Q Consensus 151 g~~~~A~~lf~~m~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 227 (589)
|.+..+..-.+.-. .+ +.....-+.++| ...|+++.++ .++... -.|.......+...+.
T Consensus 15 G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~-------------iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~ 77 (290)
T PF04733_consen 15 GNYQQCINEASLKSFSPENKLERDFYQYRSY-------------IALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLS 77 (290)
T ss_dssp T-HHHHCHHHHCHTSTCHHHHHHHHHHHHHH-------------HHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHC
T ss_pred hhHHHHHHHhhccCCCchhHHHHHHHHHHHH-------------HHcCChhHHH---HHhccC-CChhHHHHHHHHHHHh
Confidence 77777765444111 11 223344556777 7777766544 333332 2566666655555554
Q ss_pred CcCcHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 043490 228 GLVTERHASAVHSLIAKYGFE-DDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFS 306 (589)
Q Consensus 228 ~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 306 (589)
...+-+.+..-+......... .+..+......+|...|++++|++++... .+.......+..|.+.++++.|.+.++
T Consensus 78 ~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 78 SPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp TSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 434444444444333333322 34444455556788899999999999876 567777788999999999999999999
Q ss_pred hC-CCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 043490 307 NM-NVQPDSATFVSLLSACSH----AGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP 380 (589)
Q Consensus 307 ~m-~~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 380 (589)
.| ....|.. ...+..++.. ...+.+|..+|+++..+ ..+++.+.+.+.-+....|++++|.+++.+. ...|
T Consensus 156 ~~~~~~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 156 NMQQIDEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHHCCSCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHHhcCCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 99 7766644 4444444432 34689999999998654 4567788899999999999999999999887 4455
Q ss_pred C-HHHHHHHHHHHHHcCCH-HHHHHHHHHHhhcCCCChh
Q 043490 381 D-SVIWSVLLGSCRKHGET-RLAELAATKLKQLEPGDSL 417 (589)
Q Consensus 381 ~-~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~~ 417 (589)
+ ..+...++......|+. +.+.+.+.++....|..+.
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 4 77777888888888887 7788999999999996653
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=9.2e-05 Score=78.29 Aligned_cols=378 Identities=16% Similarity=0.113 Sum_probs=248.6
Q ss_pred CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHh-CCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC-CCCcch----
Q 043490 2 LHSTQIYATLFHACALHGNIKQAMQLHEHMINN-FPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMP-KRNVVS---- 75 (589)
Q Consensus 2 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~~~~~---- 75 (589)
|.|...|+.++.- .-..-+++.++.+.. +| ...|+.--+.-+.++...+-+.+-+++++++. ++++++
T Consensus 949 R~D~~LW~~VL~e-----~n~~rRqLiDqVv~tal~-E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~n 1022 (1666)
T KOG0985|consen 949 RSDPDLWAKVLNE-----ENPYRRQLIDQVVQTALP-ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRN 1022 (1666)
T ss_pred ccChHHHHHHHhc-----cChHHHHHHHHHHHhcCC-ccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchh
Confidence 3466667766641 223346788888877 43 33566677788899999999999999999875 444443
Q ss_pred -HHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCH
Q 043490 76 -WTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCA 153 (589)
Q Consensus 76 -~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~ 153 (589)
-|.||-.-.+. +.....+..+++-.--.|+.... .+..-..+++-.++. + +..+....+.|+. . +.+
T Consensus 1023 LQnLLiLtAika-d~trVm~YI~rLdnyDa~~ia~i--ai~~~LyEEAF~ifk---k--f~~n~~A~~VLie---~i~~l 1091 (1666)
T KOG0985|consen 1023 LQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIAEI--AIENQLYEEAFAIFK---K--FDMNVSAIQVLIE---NIGSL 1091 (1666)
T ss_pred hhhhHHHHHhhc-ChHHHHHHHHHhccCCchhHHHH--HhhhhHHHHHHHHHH---H--hcccHHHHHHHHH---HhhhH
Confidence 34454444444 33445555554432222222111 000000222222222 1 2333333333332 3 788
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHH
Q 043490 154 DEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTER 233 (589)
Q Consensus 154 ~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 233 (589)
+.|.+.-++..+| ..|..+..+-.+.|.+.+|++.|.+. -|+..|.-++..+.+.|.++
T Consensus 1092 dRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika-------------------dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1092 DRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA-------------------DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred HHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-------------------CCcHHHHHHHHHHHhcCcHH
Confidence 8888888877765 46889999995555555555555443 36678899999999999999
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Q 043490 234 HASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNMNVQPD 313 (589)
Q Consensus 234 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 313 (589)
.-...+..+.+..-+|. +-+.||-+|++.+++.+-++++. -||+.....+..-+...|.++.|.-+|..
T Consensus 1151 dLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~------ 1219 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSN------ 1219 (1666)
T ss_pred HHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHH------
Confidence 99999888777765554 45678999999999988766644 47777777788888888989888877754
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 043490 314 SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPM--EPDSVIWSVLLGS 391 (589)
Q Consensus 314 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~~ 391 (589)
...|..|...+...|.++.|..--++. .+..+|..+-.++...+.+.-|. --|+ -....-..-|+.-
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQ----iCGL~iivhadeLeeli~~ 1288 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQ----ICGLNIIVHADELEELIEY 1288 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHH----hcCceEEEehHhHHHHHHH
Confidence 345777777777888888776654432 35567877777777666554332 1132 2345566788999
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHH
Q 043490 392 CRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRK 440 (589)
Q Consensus 392 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 440 (589)
|...|-+++-+.+++..+.++....+.|+-|+-.|++- +.++..+-++
T Consensus 1289 Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1289 YQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred HHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 99999999999999999999887888999999999876 3444444333
No 96
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=6.7e-05 Score=79.29 Aligned_cols=285 Identities=15% Similarity=0.189 Sum_probs=194.9
Q ss_pred CceeHHHHHHHhchhhHHHHHHHHHHhcCC--CchhHHHHHHHHHhc-CCHHHHHHHHhhCC-CCChhH-----HHHHHH
Q 043490 106 NEFSLASVLISCDYLHGKLVHALALKFSLD--AHVYVANALINMYSK-SCADEAWKVFENME-FRNVIS-----WNSMIA 176 (589)
Q Consensus 106 ~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~--~~~~~~~~li~~y~~-g~~~~A~~lf~~m~-~~~~~~-----~~~li~ 176 (589)
|...|..+|..- -..-+++.+.++..+++ .|+...+.-+.++.. +-..+-.++++++. ++++.+ -|.||-
T Consensus 951 D~~LW~~VL~e~-n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiL 1029 (1666)
T KOG0985|consen 951 DPDLWAKVLNEE-NPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLIL 1029 (1666)
T ss_pred ChHHHHHHHhcc-ChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHH
Confidence 444444444221 22345566666666653 345555666777777 77778888888765 344333 233333
Q ss_pred HHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHH
Q 043490 177 AFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANA 256 (589)
Q Consensus 177 ~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 256 (589)
.- -.-+..+..+..+++..-. .|+ +...+...+-.++|..+|+.. ..+....+.
T Consensus 1030 tA--------------ikad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~V 1083 (1666)
T KOG0985|consen 1030 TA--------------IKADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQV 1083 (1666)
T ss_pred HH--------------hhcChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHH
Confidence 32 2233445555555554322 122 223344556678888888653 445666666
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 043490 257 LIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNMNVQPDSATFVSLLSACSHAGLVQEGNKV 336 (589)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~g~~~~a~~~ 336 (589)
|++ ..+.++.|.+.-++..+| ..|+.+..+-.+.|...+|++-|-+. -|+..|..++..+++.|.+++-.++
T Consensus 1084 Lie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika---dDps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1084 LIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA---DDPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred HHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc---CCcHHHHHHHHHHHhcCcHHHHHHH
Confidence 665 467788888888887655 46889999999999999999999664 4667899999999999999999999
Q ss_pred HHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh
Q 043490 337 FHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDS 416 (589)
Q Consensus 337 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 416 (589)
+....++ .-+|.+. +.||-+|++.+++.+.++++. .||..-...+..-|...|.++.|.-++.. .
T Consensus 1156 L~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------v 1220 (1666)
T KOG0985|consen 1156 LLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------V 1220 (1666)
T ss_pred HHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------h
Confidence 9766443 5556544 589999999999999888876 57877788888899999999998888764 3
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHH
Q 043490 417 LGFVQMSNIYCLSGSFNKARLIRK 440 (589)
Q Consensus 417 ~~~~~l~~~~~~~g~~~~a~~~~~ 440 (589)
+.|..|+..+...|.++.|...-+
T Consensus 1221 SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1221 SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 556667777777777776665443
No 97
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.59 E-value=0.0007 Score=68.85 Aligned_cols=410 Identities=15% Similarity=0.130 Sum_probs=208.6
Q ss_pred HccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC-------------------------
Q 043490 16 ALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK------------------------- 70 (589)
Q Consensus 16 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~------------------------- 70 (589)
...|+.++|....+..++..+ .+.+.|..+.-.+-...++++|++.|.....
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~---~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDL---KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hcccchHHHHHHHHHHhccCc---ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhH
Confidence 345666666666665555433 4555555555555555666666666654321
Q ss_pred ------------CCcchHHHHHHHHHhCCChhHHHHHHHHHHhc--cCCCceeHHHHHHHh----c-hhhHH--HHHHHH
Q 043490 71 ------------RNVVSWTALISGYAQHGNAEECFRLFCSLLQY--FFPNEFSLASVLISC----D-YLHGK--LVHALA 129 (589)
Q Consensus 71 ------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p~~~t~~~~l~a~----~-~~~~~--~~~~~~ 129 (589)
....+|..+.-++--.|+...|..+++...+. -.|+...+.-...-. . .+.+. ......
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 23345666666777778888888888887776 245554443322211 1 11111 111111
Q ss_pred H--HhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCC--CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHH-HH
Q 043490 130 L--KFSLDAHVYVANALINMYSK-SCADEAWKVFENMEF--RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEAL-FL 203 (589)
Q Consensus 130 ~--~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~-~~ 203 (589)
. +..+......-..-.+.+.+ +++++|..++..+.. ||.+.|+-.+.... .+..+.-+++ .+
T Consensus 209 ~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~l------------gk~~d~~~~lk~l 276 (700)
T KOG1156|consen 209 LDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKAL------------GKIKDMLEALKAL 276 (700)
T ss_pred HhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHH------------HHHhhhHHHHHHH
Confidence 1 11111122223344456777 888888888887764 45455544433220 1122222222 33
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHH----HHHHHHhhc--
Q 043490 204 FRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSIS----LSKQVFDKM-- 277 (589)
Q Consensus 204 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~-- 277 (589)
|....+. .+.....-..=++......-.+....++..+.+.|+++ ++..+...|-.-...+ -+..+...+
T Consensus 277 y~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~ 352 (700)
T KOG1156|consen 277 YAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSG 352 (700)
T ss_pred HHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhccc
Confidence 3333321 11000000001111111222233444455555556543 2223333232211111 011111111
Q ss_pred ------------CCCChhHHH--HHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhH
Q 043490 278 ------------TYHDLVSWN--SILKAYALHGQAKEALQLFSNM-NVQPDSA-TFVSLLSACSHAGLVQEGNKVFHSML 341 (589)
Q Consensus 278 ------------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~ 341 (589)
..|....|. -++..|-..|+++.|+..++.. +-.|+.+ -|..=.+.+.+.|++++|..++.+..
T Consensus 353 ~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~ 432 (700)
T KOG1156|consen 353 TGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ 432 (700)
T ss_pred ccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 134444454 4667788889999999999888 7777765 45556677888899999999888774
Q ss_pred HhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCC-C--------HHHHHHH--HHHHHHcCCHHHHHHHHHHHhh
Q 043490 342 ENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPMEP-D--------SVIWSVL--LGSCRKHGETRLAELAATKLKQ 410 (589)
Q Consensus 342 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~--------~~~~~~l--l~~~~~~g~~~~a~~~~~~~~~ 410 (589)
+- -.||...-.--..-..++++.++|.++.......- + .-+|-.+ ..+|.+.|++.+|.+-|..+.+
T Consensus 433 el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 433 EL--DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hc--cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 31 13444433345566678889999888877662111 1 1233333 3567777777777765555432
Q ss_pred c----------------CCCChhHHHHHHHHhhhcCC-------hHHHHHHHHHHhcCC
Q 043490 411 L----------------EPGDSLGFVQMSNIYCLSGS-------FNKARLIRKEMKGSR 446 (589)
Q Consensus 411 ~----------------~p~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~m~~~~ 446 (589)
. ......+|+-|+...-..-. ...|++++-.|.+..
T Consensus 511 ~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p 569 (700)
T KOG1156|consen 511 HYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSP 569 (700)
T ss_pred HHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCc
Confidence 1 11234556666554332221 235677777776543
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.58 E-value=0.00019 Score=81.92 Aligned_cols=255 Identities=13% Similarity=0.020 Sum_probs=170.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhCcCcHHHHHHHHHHHHHhCC---CC--cHHHHHHHHHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDW----CTFSIVLKACAGLVTERHASAVHSLIAKYGF---ED--DTVIANALIHAYA 262 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~---~~--~~~~~~~li~~~~ 262 (589)
...|++++|...+++....-...+. ...+.+...+...|+++.|...+.......- .+ ...+...+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6788999999988887653111222 2344555566789999999999888765311 11 1234566777888
Q ss_pred hcCCHHHHHHHHhhcCC-------CC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCC--HHHHHHHHHHH
Q 043490 263 RCGSISLSKQVFDKMTY-------HD----LVSWNSILKAYALHGQAKEALQLFSNM-----NVQPD--SATFVSLLSAC 324 (589)
Q Consensus 263 ~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~--~~t~~~ll~a~ 324 (589)
..|+++.|...+++... ++ ...+..+...+...|++++|...+++. ...|. ..++..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999998876541 11 223445556677789999999999887 22232 23444456677
Q ss_pred hccCcHHHHHHHHHHhHHhcCCccCcchH-----HHHHHHHhhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHHH
Q 043490 325 SHAGLVQEGNKVFHSMLENHGVVPQLDHY-----ACMVDLLGRVGRILEAEKLIREMPM-E-PDS----VIWSVLLGSCR 393 (589)
Q Consensus 325 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~----~~~~~ll~~~~ 393 (589)
...|+.++|.+.+.....-.........+ ...+..+...|+.+.|.+.+..... . ... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 78999999999988774321111111111 1122445668999999999877621 1 111 12456677788
Q ss_pred HcCCHHHHHHHHHHHhhcC------CCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 394 KHGETRLAELAATKLKQLE------PGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 394 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
..|+.++|...++++.+.. +....+...+..+|.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999987642 1123467788889999999999999999887543
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=1e-07 Score=58.38 Aligned_cols=33 Identities=36% Similarity=0.653 Sum_probs=25.4
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 043490 246 GFEDDTVIANALIHAYARCGSISLSKQVFDKMT 278 (589)
Q Consensus 246 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 278 (589)
|++||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777764
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.55 E-value=6.3e-06 Score=77.60 Aligned_cols=179 Identities=10% Similarity=0.026 Sum_probs=118.8
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-h---hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH----HH
Q 043490 249 DDTVIANALIHAYARCGSISLSKQVFDKMTY--HD-L---VSWNSILKAYALHGQAKEALQLFSNM-NVQPDSA----TF 317 (589)
Q Consensus 249 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----t~ 317 (589)
.....+..+...|.+.|++++|...|+++.. |+ . .+|..+..+|.+.|++++|+..|+++ ...|+.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455666777778888888888888887652 22 2 35667777888888888888888888 5555332 34
Q ss_pred HHHHHHHhcc--------CcHHHHHHHHHHhHHhcCCccCcc-hHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 043490 318 VSLLSACSHA--------GLVQEGNKVFHSMLENHGVVPQLD-HYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVL 388 (589)
Q Consensus 318 ~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 388 (589)
..+..++... |+.++|.+.|+.+.+. .|+.. .+..+... +...... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHH
Confidence 4444455443 6677778777777644 34322 11111111 0011000 0111245
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCC---hhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 389 LGSCRKHGETRLAELAATKLKQLEPGD---SLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 389 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
...+...|+++.|...++++.+..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 567889999999999999999886643 568899999999999999999999988754
No 101
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=1.1e-07 Score=58.20 Aligned_cols=33 Identities=42% Similarity=0.580 Sum_probs=22.8
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 043490 37 NEPQDLFVTNHLINMYAKFGYLDDARHLFDEMP 69 (589)
Q Consensus 37 ~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 69 (589)
|.+||..+||.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 445777777777777777777777777777664
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.47 E-value=0.00028 Score=70.97 Aligned_cols=253 Identities=11% Similarity=-0.029 Sum_probs=159.8
Q ss_pred HHcCCHHHHHHHHHHHHHcC-CCCCHHHHHH-HHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHH---HHHHHHhcCC
Q 043490 192 AKMKNEEEALFLFRQLQREG-MAPDWCTFSI-VLKACAGLVTERHASAVHSLIAKYGFEDDTVIANA---LIHAYARCGS 266 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~-ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~---li~~~~~~g~ 266 (589)
...|+.+++.+-+.+..+.. ..++...... ....+...|+.+.+..+++...+.. |.|...+.. +.......|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~ 95 (355)
T cd05804 17 LLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGM 95 (355)
T ss_pred HhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccC
Confidence 66677777666666654432 1233322222 2233467899999999999988874 555555542 2222233566
Q ss_pred HHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043490 267 ISLSKQVFDKMTYHD---LVSWNSILKAYALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSML 341 (589)
Q Consensus 267 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 341 (589)
.+.+.+.++.....+ ...+..+...+...|++++|.+.+++. ...|+ ...+..+...+...|++++|...++...
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l 175 (355)
T cd05804 96 RDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWR 175 (355)
T ss_pred chhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 677777776533222 234455667888999999999999999 66675 4567778888999999999999999876
Q ss_pred HhcCCccCc--chHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--C-HHHH-H--HHHHHHHHcCCHHHHHHH---HHHHh
Q 043490 342 ENHGVVPQL--DHYACMVDLLGRVGRILEAEKLIREM-PMEP--D-SVIW-S--VLLGSCRKHGETRLAELA---ATKLK 409 (589)
Q Consensus 342 ~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p--~-~~~~-~--~ll~~~~~~g~~~~a~~~---~~~~~ 409 (589)
......|+. ..|..+...+...|++++|..++++. ...| . .... + .++.-+...|..+.+.+. .....
T Consensus 176 ~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~ 255 (355)
T cd05804 176 DTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAA 255 (355)
T ss_pred hccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 532222332 23557888899999999999999987 2233 2 1111 1 233334444544333333 22211
Q ss_pred hcCCC--ChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 410 QLEPG--DSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 410 ~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
...|. ....-...+.++...|+.++|.++++.+...
T Consensus 256 ~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 256 WHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred hhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 11121 1222336777888999999999999998753
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.46 E-value=0.00091 Score=76.45 Aligned_cols=253 Identities=11% Similarity=0.022 Sum_probs=163.7
Q ss_pred HHHhc-CCHHHHHHHHhhCCC----CCh----hHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC
Q 043490 146 NMYSK-SCADEAWKVFENMEF----RNV----ISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQRE----GM 212 (589)
Q Consensus 146 ~~y~~-g~~~~A~~lf~~m~~----~~~----~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~----g~ 212 (589)
..+.. |++++|...+++... .+. ..++.+...+ ...|++++|...+.+.... |-
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~-------------~~~G~~~~A~~~~~~al~~~~~~g~ 526 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH-------------HCKGELARALAMMQQTEQMARQHDV 526 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 34555 999999988877432 222 2334444455 6778888888777776542 11
Q ss_pred -CCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh----CCC---CcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----
Q 043490 213 -APDWCTFSIVLKACAGLVTERHASAVHSLIAKY----GFE---DDTVIANALIHAYARCGSISLSKQVFDKMTY----- 279 (589)
Q Consensus 213 -~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 279 (589)
.+...++..+...+...|+++.|...++..... +.. .....+..+...+...|++++|...++....
T Consensus 527 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 606 (903)
T PRK04841 527 YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY 606 (903)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence 111234455566778899999999998876653 221 1233455666777888999999988887641
Q ss_pred -C--ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCCHHHHH-----HHHHHHhccCcHHHHHHHHHHhHHhcCCc
Q 043490 280 -H--DLVSWNSILKAYALHGQAKEALQLFSNM-NV---QPDSATFV-----SLLSACSHAGLVQEGNKVFHSMLENHGVV 347 (589)
Q Consensus 280 -~--~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~~~t~~-----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 347 (589)
+ ....+..+...+...|+.++|.+.+++. .+ ......+. ..+..+...|+.+.|.+.+...... . .
T Consensus 607 ~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~-~ 684 (903)
T PRK04841 607 QPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-E-F 684 (903)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-C-C
Confidence 1 1234555667788899999999998887 11 11111111 1123445578999999987665321 1 1
Q ss_pred cCcc----hHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 043490 348 PQLD----HYACMVDLLGRVGRILEAEKLIREM-------PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEP 413 (589)
Q Consensus 348 p~~~----~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 413 (589)
.... .+..+..++...|+.++|...+++. +..++ ..+...+..++...|+.++|...+.++.++..
T Consensus 685 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 685 ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 1111 1345667788899999999998876 22222 34566777888999999999999999988764
No 104
>PLN02789 farnesyltranstransferase
Probab=98.45 E-value=5.5e-05 Score=73.64 Aligned_cols=211 Identities=9% Similarity=0.097 Sum_probs=128.3
Q ss_pred CcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCH--HHHHH
Q 043490 230 VTERHASAVHSLIAKYGFEDDTVIANALIHAYARCG-SISLSKQVFDKMT---YHDLVSWNSILKAYALHGQA--KEALQ 303 (589)
Q Consensus 230 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~ 303 (589)
+..+.|..+...+++.. +-+..+|+.....+.+.| ++++++..++++. .++..+|+.....+.+.|.. +++++
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 34445555555555543 334444444444444555 4566666666654 23444565554444444542 55666
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhc---CC----HHHHHHHHH
Q 043490 304 LFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRV---GR----ILEAEKLIR 374 (589)
Q Consensus 304 ~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~ 374 (589)
+++++ ...| |..+|.....++.+.|+++++.+.++.+++.. ..+...|+.....+.+. |. .+++++...
T Consensus 130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 67666 5555 44566666666667777777777777776431 22444555544444333 22 245566654
Q ss_pred hC-CCCCC-HHHHHHHHHHHHHc----CCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcC------------------
Q 043490 375 EM-PMEPD-SVIWSVLLGSCRKH----GETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSG------------------ 430 (589)
Q Consensus 375 ~m-~~~p~-~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------ 430 (589)
++ ...|+ ...|+.+...+... ++..+|...+.++.+.+|.++.+...|++.|+...
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS 287 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 44 55564 78888888888773 34566888888888888888888999999998643
Q ss_pred ChHHHHHHHHHHh
Q 043490 431 SFNKARLIRKEMK 443 (589)
Q Consensus 431 ~~~~a~~~~~~m~ 443 (589)
..++|.++++.+.
T Consensus 288 ~~~~a~~~~~~l~ 300 (320)
T PLN02789 288 DSTLAQAVCSELE 300 (320)
T ss_pred cHHHHHHHHHHHH
Confidence 2367888888874
No 105
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00071 Score=68.08 Aligned_cols=389 Identities=12% Similarity=0.037 Sum_probs=211.6
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhc-hhhHH
Q 043490 48 LINMYAKFGYLDDARHLFDEMPK--R-NVVSWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCD-YLHGK 123 (589)
Q Consensus 48 li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~-~~~~~ 123 (589)
=++.+.+.|++++|.+.-+++.. | |......=+-++++.+++++|+.+.+.-... +......+=+++. ....+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHHHHccc
Confidence 35677788999999988888764 3 5566777788899999999999665543221 1111111223333 33333
Q ss_pred HHHHHHHHhcCCCchh-HHHHHHHHHhc-CCHHHHHHHHhhCCCCChhHHHH-----HHHHH-HcC------------Cc
Q 043490 124 LVHALALKFSLDAHVY-VANALINMYSK-SCADEAWKVFENMEFRNVISWNS-----MIAAF-RAC------------KL 183 (589)
Q Consensus 124 ~~~~~~~~~g~~~~~~-~~~~li~~y~~-g~~~~A~~lf~~m~~~~~~~~~~-----li~~~-~~~------------g~ 183 (589)
.-.+.....|.+++.. +...-...+.+ |++++|.++|+.+.+.+...+.. ++.+- ... +.
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~s 174 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDS 174 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcch
Confidence 3333333335555543 44434445566 88999999988875322221111 11110 000 11
Q ss_pred HHHHHH---HHHHcCCHHHHHHHHHHHHHcC-------------CCCCHHH-HHHHHHHHhCcCcHHHHHHHHHHHHHhC
Q 043490 184 EAQAIE---LFAKMKNEEEALFLFRQLQREG-------------MAPDWCT-FSIVLKACAGLVTERHASAVHSLIAKYG 246 (589)
Q Consensus 184 ~~~a~~---~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g 246 (589)
++.+.. .+...|++.+|+++++...+.+ ++-+..+ -.-+.-++...|+.++|.+++...++..
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 111111 1356677777777777662211 1111111 1123334456788888888888887776
Q ss_pred CCCcH----HHHHHHHHHHHhcCCHH-HHHHHHhhcCCCC--------------hhHHHHHHHHHHHcCCHHHHHHHHHh
Q 043490 247 FEDDT----VIANALIHAYARCGSIS-LSKQVFDKMTYHD--------------LVSWNSILKAYALHGQAKEALQLFSN 307 (589)
Q Consensus 247 ~~~~~----~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~ 307 (589)
++|. ...|.|+.+-....=.+ .++..++...... .+..|..+-.+ -.+..+.+.++-..
T Consensus 255 -~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l-~tnk~~q~r~~~a~ 332 (652)
T KOG2376|consen 255 -PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL-FTNKMDQVRELSAS 332 (652)
T ss_pred -CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHh
Confidence 3333 23344443322111111 2333333322111 11122211111 13444556666555
Q ss_pred C-CCCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHhHHhcCCccC--cchHHHHHHHHhhcCCHHHHHHHHH--------
Q 043490 308 M-NVQPDSATFVSLLSACS--HAGLVQEGNKVFHSMLENHGVVPQ--LDHYACMVDLLGRVGRILEAEKLIR-------- 374 (589)
Q Consensus 308 m-~~~p~~~t~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~-------- 374 (589)
. +..|... +-.++..+. +...+..+.+++....+. .|. ..+.-.++......|+++.|.+++.
T Consensus 333 lp~~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~---~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 333 LPGMSPESL-FPILLQEATKVREKKHKKAIELLLQFADG---HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred CCccCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhcc---CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 5 5555543 334444332 223567777777766443 232 3455666778889999999999998
Q ss_pred hC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC----C---CChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 375 EM-PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLE----P---GDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 375 ~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
.. .+.-.+.+..++...+.+.++.+.|..++..+...- + .-...+..++..-.+.|+-++|.++++++.+.
T Consensus 409 s~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 409 SILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 44 233345666777888888888888888887776521 2 12233445555566789999999999999874
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.43 E-value=1.7e-05 Score=71.90 Aligned_cols=147 Identities=8% Similarity=0.097 Sum_probs=107.8
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHH
Q 043490 290 KAYALHGQAKEALQLFSNMNVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEA 369 (589)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 369 (589)
..|...|+++.+....+.+ ..|. ..+...++.+++...++...+. -+.+...|..|...|...|++++|
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~-~~~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRL-ADPL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHcchHHHHHHHHHHH-hCcc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4466667666654444333 0110 0111245666776666665543 134677888888889999999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHH-HHcCC--HHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 370 EKLIREM-PMEPD-SVIWSVLLGSC-RKHGE--TRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 370 ~~~~~~m-~~~p~-~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
...|++. ...|+ ...+..+..++ ...|+ .++|.++++++++.+|.++.++..++..+.+.|++++|...|+++.+
T Consensus 93 ~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 93 LLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999888 55664 77788887764 67676 59999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 043490 445 SRV 447 (589)
Q Consensus 445 ~~~ 447 (589)
..-
T Consensus 173 l~~ 175 (198)
T PRK10370 173 LNS 175 (198)
T ss_pred hCC
Confidence 543
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.42 E-value=4.2e-06 Score=71.65 Aligned_cols=113 Identities=12% Similarity=-0.008 Sum_probs=66.8
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 043490 309 NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIW 385 (589)
Q Consensus 309 ~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 385 (589)
.+.|+. +..+..++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++. ...| +...|
T Consensus 21 ~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~ 95 (144)
T PRK15359 21 SVDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPV 95 (144)
T ss_pred HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 344443 33344555566666666666666542 233 4445566666666666666666666665 3344 35666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHh
Q 043490 386 SVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIY 426 (589)
Q Consensus 386 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 426 (589)
..+..++...|++++|+..++++++..|+++..+.....+.
T Consensus 96 ~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 96 YQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 66666666677777777777777777776666665544443
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.38 E-value=2.3e-05 Score=73.78 Aligned_cols=180 Identities=14% Similarity=0.037 Sum_probs=128.9
Q ss_pred CCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Chh---H
Q 043490 214 PDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDT---VIANALIHAYARCGSISLSKQVFDKMTY--H-DLV---S 284 (589)
Q Consensus 214 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~---~ 284 (589)
.....+......+...|+++.|...++.+++.. +.+. .++..+...|.+.|++++|...|+++.+ | +.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 455677788888899999999999999998764 3332 4667889999999999999999999862 2 222 4
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHH
Q 043490 285 WNSILKAYALH--------GQAKEALQLFSNM-NVQPDSA-TFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYA 354 (589)
Q Consensus 285 ~~~li~~~~~~--------g~~~~A~~~~~~m-~~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 354 (589)
+..+..++.+. |+.++|.+.|+++ ...|+.. ....+... .. . .... . ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~-~~---~------~~~~-~--------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM-DY---L------RNRL-A--------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH-HH---H------HHHH-H--------HHHH
Confidence 55556666654 7889999999999 6677653 22222111 00 0 0000 0 0122
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 043490 355 CMVDLLGRVGRILEAEKLIREM----PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEP 413 (589)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 413 (589)
.+...|.+.|++++|...+++. +-.|. ...|..+..++...|++++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567788999999999999887 32333 67888999999999999999999888876555
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=1.7e-05 Score=79.13 Aligned_cols=239 Identities=14% Similarity=0.069 Sum_probs=180.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHH
Q 043490 191 FAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLS 270 (589)
Q Consensus 191 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 270 (589)
+.++|+..+|.-.|+...+.. +-+...|.-|....+..++-..|+..+.+..+.. +.+..+.-+|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 378888999999999888763 3356788888888889999999999999998876 67788889999999999999999
Q ss_pred HHHHhhcCC--C----------ChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHhccCcHHHHH
Q 043490 271 KQVFDKMTY--H----------DLVSWNSILKAYALHGQAKEALQLFSNM----NVQPDSATFVSLLSACSHAGLVQEGN 334 (589)
Q Consensus 271 ~~~~~~~~~--~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~t~~~ll~a~~~~g~~~~a~ 334 (589)
.+.|+.-.. | +...-+. ..+..........++|-++ +..+|......|.-.|--.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 999886531 0 1000000 1222223345566777777 43456666666666777889999999
Q ss_pred HHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 043490 335 KVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQL 411 (589)
Q Consensus 335 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 411 (589)
..|+..+ .++| |...||.|...++...+.++|+.-|++. .++|. +.++-.|.-+|...|.+++|...|-.++.+
T Consensus 451 Dcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999887 5577 6678999999999999999999999998 88998 778888999999999999999999888776
Q ss_pred CCC----------ChhHHHHHHHHhhhcCChHHHH
Q 043490 412 EPG----------DSLGFVQMSNIYCLSGSFNKAR 436 (589)
Q Consensus 412 ~p~----------~~~~~~~l~~~~~~~g~~~~a~ 436 (589)
.+. +...|.+|=.++.-.++.|-+.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 542 1234555555555555554333
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=1.5e-05 Score=81.58 Aligned_cols=189 Identities=16% Similarity=0.160 Sum_probs=151.9
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 043490 246 GFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDSATFVSLLSAC 324 (589)
Q Consensus 246 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~ 324 (589)
+++|-...-..+...+.++|-...|..+|++. ..|.-.|.+|+..|+..+|..+..+- .-+||+.-|..+.+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVL 467 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhc
Confidence 45666677778899999999999999999986 57888999999999999999998888 8788999999999998
Q ss_pred hccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 043490 325 SHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAE 402 (589)
Q Consensus 325 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 402 (589)
....-+++|.++++....+ .-..+.....+.++++++.+.|+.- .+.|- ..+|-.+..+..+.++.+.|.
T Consensus 468 ~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 8888899999998876433 1111122223467888888888765 55553 678888888888888888888
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCC
Q 043490 403 LAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRV 447 (589)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 447 (589)
+.|.....++|++...|+++..+|.+.|+-.+|...+++..+-+.
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 888888888888888888888888888888888888888877664
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.34 E-value=6.7e-05 Score=82.05 Aligned_cols=179 Identities=13% Similarity=0.122 Sum_probs=103.5
Q ss_pred HHHHHHHHhc-CCHHHHHHHHhhCCCC-C-hhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 043490 141 ANALINMYSK-SCADEAWKVFENMEFR-N-VISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWC 217 (589)
Q Consensus 141 ~~~li~~y~~-g~~~~A~~lf~~m~~~-~-~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 217 (589)
|.+++++-.. |.-+...++|++.-+- | ...|..|...| .+.+.+++|.++|+.|.+. ..-...
T Consensus 1500 WiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy-------------~k~ek~~~A~ell~~m~KK-F~q~~~ 1565 (1710)
T KOG1070|consen 1500 WIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIY-------------EKSEKNDEADELLRLMLKK-FGQTRK 1565 (1710)
T ss_pred HHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHH-------------HHhhcchhHHHHHHHHHHH-hcchhh
Confidence 3444444444 4444444444444331 1 22345555555 6666666666666666543 223445
Q ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHH
Q 043490 218 TFSIVLKACAGLVTERHASAVHSLIAKYGFED--DTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAY 292 (589)
Q Consensus 218 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 292 (589)
.|...+..+.+..+-+.|..++.++++.= |. .+....-.+.+-.++|+.+.++.+|+... .+-...|+..|..-
T Consensus 1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e 1644 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDME 1644 (1710)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHH
Confidence 56666666666666666666666665541 22 34455566666777788888888887766 23456788888888
Q ss_pred HHcCCHHHHHHHHHhC---CCCCCH--HHHHHHHHHHhccCcHHHHH
Q 043490 293 ALHGQAKEALQLFSNM---NVQPDS--ATFVSLLSACSHAGLVQEGN 334 (589)
Q Consensus 293 ~~~g~~~~A~~~~~~m---~~~p~~--~t~~~ll~a~~~~g~~~~a~ 334 (589)
.++|+.+.+..+|++. ++.|-. ..|.--|..=.+.|+-+.+.
T Consensus 1645 ik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1645 IKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred HccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 8888888888888887 555532 34555555444445544333
No 112
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.33 E-value=0.00015 Score=76.96 Aligned_cols=394 Identities=13% Similarity=0.017 Sum_probs=195.9
Q ss_pred CHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHH
Q 043490 20 NIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK---RNVVSWTALISGYAQHGNAEECFRLF 96 (589)
Q Consensus 20 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 96 (589)
+...+...|=+.++..+ .=...|..|...|...-+...|.+.|++..+ .|..++......|++..+++.|..+.
T Consensus 473 ~~~~al~ali~alrld~---~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV---SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 35555555555554433 3345788888888888888889999988765 46778889999999999999998884
Q ss_pred HHHHhccCCCceeHHHHHHHhchhhHHHHHHHHH--Hh--c-CCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCCCChhH
Q 043490 97 CSLLQYFFPNEFSLASVLISCDYLHGKLVHALAL--KF--S-LDAHVYVANALINMYSK-SCADEAWKVFENMEFRNVIS 170 (589)
Q Consensus 97 ~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~--~~--g-~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~~~~~~ 170 (589)
-..-+.-..-...++-+.+....-.+...|+.+. +. . -+.|...|..|..+|.+ |++..|.++|++...-++.+
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 3322221111111111111111112222333222 11 1 23466778888999999 99999999998876544433
Q ss_pred HHH-HHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHhCcCc-------HHHHH
Q 043490 171 WNS-MIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREG------MAPDWCTFSIVLKACAGLVT-------ERHAS 236 (589)
Q Consensus 171 ~~~-li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~~~-------~~~a~ 236 (589)
|-. .-.+- +-+.+|.+.+|+..+....... ..--..++..+...+...|- ++.+.
T Consensus 630 ~y~~fk~A~-----------~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 630 KYGRFKEAV-----------MECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred HHHHHHHHH-----------HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 322 11110 0156677777777776654321 11111222222222222222 22233
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh--HHHHHHHH-HHHcCCH---H---HHHHHHHh
Q 043490 237 AVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLV--SWNSILKA-YALHGQA---K---EALQLFSN 307 (589)
Q Consensus 237 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~ 307 (589)
+.+.-.+......+...|-.+. .|..+|-... ||.+ .+..++.. .-..+.. + -+.+.+-.
T Consensus 699 e~f~~~l~h~~~~~~~~Wi~as----------dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~ 767 (1238)
T KOG1127|consen 699 ESFIVSLIHSLQSDRLQWIVAS----------DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA 767 (1238)
T ss_pred HHHHHHHHHhhhhhHHHHHHHh----------HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH
Confidence 3333333322222333332222 2223333332 2211 11111111 1111111 0 01111100
Q ss_pred C-CCCCCHHHHHHHHHHHhc----c----CcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 043490 308 M-NVQPDSATFVSLLSACSH----A----GLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-P 377 (589)
Q Consensus 308 m-~~~p~~~t~~~ll~a~~~----~----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 377 (589)
- ....+..+|..+...+.+ . .+...|...+...+ ....+...+-..+......|.+.-|..-|-+. -
T Consensus 768 hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV---~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~ 844 (1238)
T KOG1127|consen 768 HLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV---SLCANNEGLWNALGVLSGIGNVACAQHCFIKSRF 844 (1238)
T ss_pred HHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH---HHhhccHHHHHHHHHhhccchhhhhhhhhhhhhh
Confidence 0 111122333333322221 1 12224444444433 22333333333333445556666555554433 2
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHH
Q 043490 378 MEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKE 441 (589)
Q Consensus 378 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 441 (589)
..| ...+|..+...|..+.+++-|...|.++..++|.|...|......-...|+.-++..+|..
T Consensus 845 sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 845 SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 233 4677777777777788888888888888888887777777777777777777777776654
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.32 E-value=8.5e-06 Score=69.75 Aligned_cols=98 Identities=13% Similarity=-0.088 Sum_probs=88.1
Q ss_pred ccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 043490 347 VPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSN 424 (589)
Q Consensus 347 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 424 (589)
.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++.+++|.++..+..+..
T Consensus 23 ~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~ 100 (144)
T PRK15359 23 DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGV 100 (144)
T ss_pred CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 454 3556788889999999999999988 5566 58899999999999999999999999999999999999999999
Q ss_pred HhhhcCChHHHHHHHHHHhcCC
Q 043490 425 IYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 425 ~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
++...|++++|+..++...+..
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999987654
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=1.4e-05 Score=81.79 Aligned_cols=218 Identities=14% Similarity=0.092 Sum_probs=156.8
Q ss_pred CCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHH
Q 043490 212 MAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT--YHDLVSWNSIL 289 (589)
Q Consensus 212 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li 289 (589)
.+|--..=..+...+.+.|-...|..+++.+. .+.-.+..|...|+..+|..+..+-. +||...|..+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhh
Confidence 33333333444555566777777777776543 45566777888888777777766554 45667777777
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHH
Q 043490 290 KAYALHGQAKEALQLFSNMNVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILE 368 (589)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 368 (589)
...-+.--+++|.++++.... ..-..+.....+.++++++.+.|+.-.+ +.| ...+|-.+.-+..++++++.
T Consensus 465 Dv~~d~s~yEkawElsn~~sa----rA~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISA----RAQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hhccChHHHHHHHHHhhhhhH----HHHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHH
Confidence 777777777888888877511 1111111122336788888888876543 333 45577777778888889999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 369 AEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 369 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
|.+.|..- ...|| ...||.+-.+|.+.|+-.+|...++++.+.+-.+...|...+-.-.+.|.|++|.+.+.++.+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 88888777 66787 7889999999999999999999999999988777788888888889999999999999888653
No 115
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.31 E-value=0.0008 Score=71.63 Aligned_cols=411 Identities=13% Similarity=0.056 Sum_probs=202.6
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHH-H--HHHHHhCCChhHHH
Q 043490 17 LHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTA-L--ISGYAQHGNAEECF 93 (589)
Q Consensus 17 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~-l--i~~~~~~g~~~~A~ 93 (589)
..++...+..-|....+..| .|...|..|..+|..+|++..|.++|++...-++.+|-. . ...-+..|.+.+|+
T Consensus 574 ea~n~h~aV~~fQsALR~dP---kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDP---KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred CccchhhHHHHHHHHhcCCc---hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 34555566666666665555 788888999999999999999999998776544443322 1 22345677888888
Q ss_pred HHHHHHHhc---cCCCceeHHHHHHHhc---------------hhhHHHHHHHHHHhcCCCchhHHH-------------
Q 043490 94 RLFCSLLQY---FFPNEFSLASVLISCD---------------YLHGKLVHALALKFSLDAHVYVAN------------- 142 (589)
Q Consensus 94 ~~~~~m~~~---~~p~~~t~~~~l~a~~---------------~~~~~~~~~~~~~~g~~~~~~~~~------------- 142 (589)
..+...... ..|-.......+-.++ .+...+.+...+......+...|-
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 877766543 1111111111111111 122222222222211111111111
Q ss_pred ------HHHHHH----hc-CCH--HH----HHHHHhhCC--CCChhHHHHHHHHHHcCCcHHHHHHHHHHc----CCHHH
Q 043490 143 ------ALINMY----SK-SCA--DE----AWKVFENME--FRNVISWNSMIAAFRACKLEAQAIELFAKM----KNEEE 199 (589)
Q Consensus 143 ------~li~~y----~~-g~~--~~----A~~lf~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----g~~~~ 199 (589)
.++..+ -+ +.. ++ +.+.+-.-. .-+..+|..++..|.+ .|... .+...
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr---------~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR---------YFLLLGETMKDACT 801 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH---------HHHHcCCcchhHHH
Confidence 111111 11 111 00 000000000 0134556555555411 01111 12235
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 043490 200 ALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTY 279 (589)
Q Consensus 200 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 279 (589)
|+..+.+-.+.. ..+..+|+. +......|++..+..-|-.-.... +....+|..+.-.+.+..+++.|...|.+...
T Consensus 802 Ai~c~KkaV~L~-ann~~~Wna-LGVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 802 AIRCCKKAVSLC-ANNEGLWNA-LGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHh-hccHHHHHH-HHHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 666666655431 223344443 333344455544444333333222 45566677777777777777777777776652
Q ss_pred ---CChhHHHHHH---------------------------------------HHHHHcCCHHHHHHHHHhC---------
Q 043490 280 ---HDLVSWNSIL---------------------------------------KAYALHGQAKEALQLFSNM--------- 308 (589)
Q Consensus 280 ---~~~~~~~~li---------------------------------------~~~~~~g~~~~A~~~~~~m--------- 308 (589)
.|...|--+. .-..++|+.++-+..-+++
T Consensus 879 LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~ 958 (1238)
T KOG1127|consen 879 LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSY 958 (1238)
T ss_pred cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHH
Confidence 2333333222 2234445544443333333
Q ss_pred --CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHH----HHHhhcCCHHHHHHHHHhCCCCCC
Q 043490 309 --NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMV----DLLGRVGRILEAEKLIREMPMEPD 381 (589)
Q Consensus 309 --~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~p~ 381 (589)
+-.| +...|........+.+.+..|.+...+...-...+-+...|+... ..+...|.++.|..-+...+...|
T Consensus 959 yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evd 1038 (1238)
T KOG1127|consen 959 YFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVD 1038 (1238)
T ss_pred HHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHH
Confidence 2223 345666666666666777766666555432222234555666433 334456777777776666544555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh---hHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 382 SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDS---LGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 382 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
..+-.+-+..+ -.++++.+.+.|+++..+-..+. .....++..-..++.-+.|...+-+..
T Consensus 1039 Edi~gt~l~lF-fkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1039 EDIRGTDLTLF-FKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred HHHhhhhHHHH-HHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 55554444443 35688999999999887543222 223334444455666667766554444
No 116
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.31 E-value=0.0025 Score=59.94 Aligned_cols=301 Identities=12% Similarity=0.060 Sum_probs=166.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHH---HHHHhCCCh
Q 043490 13 HACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALI---SGYAQHGNA 89 (589)
Q Consensus 13 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~ 89 (589)
..+...|.+..|+.-|-..++..| .+-.++-.-...|...|+-.-|+.=|++..+.-+..+.+-| ..+.+.|.+
T Consensus 46 k~lla~~Q~sDALt~yHaAve~dp---~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGDP---NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCc---hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 344445566666655555554322 33333444456777788877777777766543333333333 457889999
Q ss_pred hHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCCCCh
Q 043490 90 EECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFENMEFRNV 168 (589)
Q Consensus 90 ~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~~~~ 168 (589)
++|..=|+..++. .|+.-+-. ..+.+ .-+++-+.+
T Consensus 123 e~A~~DF~~vl~~-~~s~~~~~----------------------------------eaqskl~~~~e~~~l--------- 158 (504)
T KOG0624|consen 123 EQAEADFDQVLQH-EPSNGLVL----------------------------------EAQSKLALIQEHWVL--------- 158 (504)
T ss_pred HHHHHHHHHHHhc-CCCcchhH----------------------------------HHHHHHHhHHHHHHH---------
Confidence 9999999998875 23221111 11111 111111111
Q ss_pred hHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCC
Q 043490 169 ISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFE 248 (589)
Q Consensus 169 ~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 248 (589)
-..+..+ ...|+...|+.....+++. .+-|...|..-..+|...|.+..|+.=++...+.. .
T Consensus 159 ---~~ql~s~-------------~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~ 220 (504)
T KOG0624|consen 159 ---VQQLKSA-------------SGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-Q 220 (504)
T ss_pred ---HHHHHHH-------------hcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-c
Confidence 0111222 3445555555555555542 12244444444445555555555554444444443 2
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh--h----HHHHH---------HHHHHHcCCHHHHHHHHHhC-CCCC
Q 043490 249 DDTVIANALIHAYARCGSISLSKQVFDKMTYHDL--V----SWNSI---------LKAYALHGQAKEALQLFSNM-NVQP 312 (589)
Q Consensus 249 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~~l---------i~~~~~~g~~~~A~~~~~~m-~~~p 312 (589)
.+....--+-..+...|+.+.++...++..+-|+ - .|-.+ +......+++.++++-.+.. ...|
T Consensus 221 DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 221 DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 2333333444555555666665555555542221 1 11111 12345567888888888887 6666
Q ss_pred CH--HHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCccC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 043490 313 DS--ATF---VSLLSACSHAGLVQEGNKVFHSMLENHGVVPQ-LDHYACMVDLLGRVGRILEAEKLIREM-PMEPD 381 (589)
Q Consensus 313 ~~--~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 381 (589)
.. +++ ..+-.++...+.+.+|.+.-.+++ .+.|+ +.++.--.++|.-...+++|+.-|+.. ...++
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 52 233 344455667889999999888776 55675 778888888999999999999999887 44443
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.29 E-value=8.5e-05 Score=67.29 Aligned_cols=117 Identities=20% Similarity=0.136 Sum_probs=52.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCC
Q 043490 320 LLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGE 397 (589)
Q Consensus 320 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~ 397 (589)
.+....+.|++.+|...+++... .-++|...|+.+.-+|.+.|++++|..-|.+. .+.|+ ....+.|.-.+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 33444444444444444444321 22234444444444444444444444444433 22222 3444444444444555
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHH
Q 043490 398 TRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLI 438 (589)
Q Consensus 398 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 438 (589)
.+.|+.++.......+.|..+-..|..+-...|++++|..+
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555544444444444444555555555555555443
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.27 E-value=6e-05 Score=68.25 Aligned_cols=151 Identities=11% Similarity=0.136 Sum_probs=104.6
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHH
Q 043490 258 IHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNK 335 (589)
Q Consensus 258 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~ 335 (589)
+-+|...|+++......+.+..+. ..|...++.++++..+++. ...| |...|..+...+...|++++|..
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~ 94 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALL 94 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 446777777766655443332221 0112255667777777776 5555 55677778888888888888888
Q ss_pred HHHHhHHhcCCcc-CcchHHHHHHH-HhhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 043490 336 VFHSMLENHGVVP-QLDHYACMVDL-LGRVGR--ILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLK 409 (589)
Q Consensus 336 ~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 409 (589)
.|+...+ +.| +...+..+..+ |.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++++
T Consensus 95 a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 95 AYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8887753 344 55667777765 466676 48888888887 4556 47788888889999999999999999999
Q ss_pred hcCCCChhHH
Q 043490 410 QLEPGDSLGF 419 (589)
Q Consensus 410 ~~~p~~~~~~ 419 (589)
++.|++..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9887665443
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.24 E-value=8.9e-05 Score=79.59 Aligned_cols=155 Identities=11% Similarity=0.093 Sum_probs=121.8
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHH
Q 043490 280 HDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDSA-TFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACM 356 (589)
Q Consensus 280 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 356 (589)
.++..+-.|.....+.|..++|+.+++.. ...||.. ....+...+.+.+++++|....+.... ..| +......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHH
Confidence 35778888888899999999999999999 8899765 677788899999999999999988864 355 45567778
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHH
Q 043490 357 VDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNK 434 (589)
Q Consensus 357 i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 434 (589)
..++.+.|++++|.++|++. .-.|+ ..+|..+..++...|+.++|...|+++.+...+-...|+.++ ++...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~ 234 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNA 234 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHH
Confidence 88899999999999999998 33455 888999999999999999999999999887654445555433 23333
Q ss_pred HHHHHHHHh
Q 043490 435 ARLIRKEMK 443 (589)
Q Consensus 435 a~~~~~~m~ 443 (589)
-...++.+.
T Consensus 235 ~~~~~~~~~ 243 (694)
T PRK15179 235 DLAALRRLG 243 (694)
T ss_pred HHHHHHHcC
Confidence 344555554
No 120
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=0.00045 Score=71.82 Aligned_cols=246 Identities=17% Similarity=0.168 Sum_probs=174.6
Q ss_pred CchhHHHHHHH--HHhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 043490 136 AHVYVANALIN--MYSK-SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGM 212 (589)
Q Consensus 136 ~~~~~~~~li~--~y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~ 212 (589)
.|..+..++++ .|.. |+.+.|.+-.+.+. +...|..|.+.+++..+.+-|.-.+..+++...|.. +++.++.|-
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRA-lR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARA-LRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHH-HHHHHhCCc
Confidence 46677777876 4777 99999988877765 457899999999999999999888877777665544 344444432
Q ss_pred CCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-hHHHHHHHH
Q 043490 213 APDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDL-VSWNSILKA 291 (589)
Q Consensus 213 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~ 291 (589)
+...-..+ .....|.+++|..+|++-.+.. .|-..|-..|.+++|.++-+.-..-.. .||.....-
T Consensus 801 --e~eakvAv--LAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~ 867 (1416)
T KOG3617|consen 801 --EDEAKVAV--LAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKY 867 (1416)
T ss_pred --chhhHHHH--HHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHH
Confidence 11111112 2357899999999999887643 455567889999999988765432222 366666666
Q ss_pred HHHcCCHHHHHHHHHhCCCC----------------------CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccC
Q 043490 292 YALHGQAKEALQLFSNMNVQ----------------------PDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQ 349 (589)
Q Consensus 292 ~~~~g~~~~A~~~~~~m~~~----------------------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 349 (589)
+-..++.+.|++.|++.++. .|...|.--..-....|++|.|..+|....
T Consensus 868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-------- 939 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-------- 939 (1416)
T ss_pred HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------
Confidence 77788899999999887221 123333344444556788888888887763
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 043490 350 LDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQ 410 (589)
Q Consensus 350 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 410 (589)
-|-+++...+-.|+.++|-++-++-+ |....-.|.+-|-..|++.+|..+|.++..
T Consensus 940 --D~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 940 --DYFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred --hhhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 25677888888899999999888865 555555678888889999999888877643
No 121
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.0014 Score=60.44 Aligned_cols=280 Identities=12% Similarity=-0.008 Sum_probs=185.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhh
Q 043490 45 TNHLINMYAKFGYLDDARHLFDEMPKR---NVVSWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLH 121 (589)
Q Consensus 45 ~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~ 121 (589)
+++.+.-+.+..++++|++++..-.++ +....+.|.-+|-...++..|...|+++-..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql------------------- 73 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL------------------- 73 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------
Confidence 456666677888999999998876653 4556777778888899999999999988654
Q ss_pred HHHHHHHHHHhcCCCchhHHH--HHHHHHhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHH
Q 043490 122 GKLVHALALKFSLDAHVYVAN--ALINMYSKSCADEAWKVFENMEF-RNVISWNSMIAAFRACKLEAQAIELFAKMKNEE 198 (589)
Q Consensus 122 ~~~~~~~~~~~g~~~~~~~~~--~li~~y~~g~~~~A~~lf~~m~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~ 198 (589)
.|...-|. -.-+.|-.+.+.+|.++...|.. ++...-..-+.+-. .-+.+++.
T Consensus 74 -------------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAI-----------kYse~Dl~ 129 (459)
T KOG4340|consen 74 -------------HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAI-----------KYSEGDLP 129 (459)
T ss_pred -------------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHH-----------hcccccCc
Confidence 12111111 11123333778899999888876 33322222222210 14557777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 043490 199 EALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYG-FEDDTVIANALIHAYARCGSISLSKQVFDKM 277 (589)
Q Consensus 199 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 277 (589)
.+..+.++....| +..+.+.......+.|+.+.|.+-|....+.+ +.| ...||.-+ +..+.|+++.|++...++
T Consensus 130 g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 130 GSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEI 204 (459)
T ss_pred chHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHH
Confidence 7777777765433 33444444334468899999999999988764 444 44565444 456679999999988776
Q ss_pred CC-----------------CCh---------------hHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHH
Q 043490 278 TY-----------------HDL---------------VSWNSILKAYALHGQAKEALQLFSNM----NVQPDSATFVSLL 321 (589)
Q Consensus 278 ~~-----------------~~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~t~~~ll 321 (589)
.+ +|+ ..+|.-...+.+.|+.+.|.+.+..| .-..|++|...+.
T Consensus 205 ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~A 284 (459)
T KOG4340|consen 205 IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQA 284 (459)
T ss_pred HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHH
Confidence 41 222 12343444467889999999999999 4456788887654
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 043490 322 SACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM 376 (589)
Q Consensus 322 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 376 (589)
-.= ..+++.++.+-++-+. ++.| ..+|+..++-.|++..-++-|-+++.+-
T Consensus 285 l~n-~~~~p~~g~~KLqFLL---~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 285 LMN-MDARPTEGFEKLQFLL---QQNPFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred Hhc-ccCCccccHHHHHHHH---hcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 322 2345666666666655 4445 5579999999999999999999998775
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.19 E-value=8.9e-05 Score=67.16 Aligned_cols=140 Identities=16% Similarity=0.092 Sum_probs=113.5
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCH
Q 043490 305 FSNMNVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM--PMEPDS 382 (589)
Q Consensus 305 ~~~m~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~ 382 (589)
.......|+......+-.++...|+-+....+....... -..|.......+....+.|++.+|...|++. +-.||.
T Consensus 57 ~~~~~~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~ 134 (257)
T COG5010 57 GAAVLRNPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW 134 (257)
T ss_pred HHHHhcCcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh
Confidence 333345564433355666777788888888887765332 2234456666889999999999999999999 445679
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 383 VIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 383 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
..|+.+..+|.+.|+++.|...+.+..++.|.++..++.|...|.-.|+.++|..++......+
T Consensus 135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 135 EAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred hhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999998877544
No 123
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.19 E-value=0.015 Score=61.79 Aligned_cols=401 Identities=15% Similarity=0.140 Sum_probs=216.7
Q ss_pred HccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHH--HHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChh
Q 043490 16 ALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINM--YAKFGYLDDARHLFDEMPK---RNVVSWTALISGYAQHGNAE 90 (589)
Q Consensus 16 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 90 (589)
...+++..|.+..+.+.+..| ... |...+.+ ..+.|+.++|..+++.... .|..+...+-..|.+.|+.+
T Consensus 20 ld~~qfkkal~~~~kllkk~P---n~~--~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHP---NAL--YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCC---CcH--HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 356789999999999988854 332 3333443 4578999999999987653 37788999999999999999
Q ss_pred HHHHHHHHHHhccCCCceeHHHHHHHhc----hhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc--CCH---------HH
Q 043490 91 ECFRLFCSLLQYFFPNEFSLASVLISCD----YLHGKLVHALALKFSLDAHVYVANALINMYSK--SCA---------DE 155 (589)
Q Consensus 91 ~A~~~~~~m~~~~~p~~~t~~~~l~a~~----~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~--g~~---------~~ 155 (589)
+|..+|++.... .|+..-...++.++. ...-.++--.+ -..++.+.+.+=+.++.+.. ... .-
T Consensus 95 ~~~~~Ye~~~~~-~P~eell~~lFmayvR~~~yk~qQkaa~~L-yK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 95 EAVHLYERANQK-YPSEELLYHLFMAYVREKSYKKQQKAALQL-YKNFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHHhh-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 999999998876 555444445555544 11111111111 11344445544455555443 111 22
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHH------HHHHHcCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHhC
Q 043490 156 AWKVFENMEFRNVISWNSMIAAFRACKLEAQAI------ELFAKMKNEEEALFLFR-QLQREGMAPDWCTFSIVLKACAG 228 (589)
Q Consensus 156 A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~------~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~a~~~ 228 (589)
|.+.++.+.+.. |..+... -++...|.+++|++++. ..-+.-..-+...-+--+..+..
T Consensus 173 A~~m~~~~l~~~--------------gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 173 AEKMVQKLLEKK--------------GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL 238 (932)
T ss_pred HHHHHHHHhccC--------------CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 334444433222 1111100 11256677888888873 33332233344444455666677
Q ss_pred cCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH----------------hcCCHHHHHHHHhhcCCC-ChhHHHHHHHH
Q 043490 229 LVTERHASAVHSLIAKYGFEDDTVIANALIHAYA----------------RCGSISLSKQVFDKMTYH-DLVSWNSILKA 291 (589)
Q Consensus 229 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~----------------~~g~~~~A~~~~~~~~~~-~~~~~~~li~~ 291 (589)
.+++.+..++-.++...| ..| |...++.+. ..+.++...+..++.... .--.|-+-+.+
T Consensus 239 l~~w~~l~~l~~~Ll~k~-~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel 314 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKG-NDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLEL 314 (932)
T ss_pred hcChHHHHHHHHHHHHhC-Ccc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHH
Confidence 788888888888887776 223 333222222 223333333333332211 11223333333
Q ss_pred H---HHcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcc-------hHHHH
Q 043490 292 Y---ALHGQAKEALQLFSNM-NVQP----DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLD-------HYACM 356 (589)
Q Consensus 292 ~---~~~g~~~~A~~~~~~m-~~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-------~~~~l 356 (589)
+ -.-|+.+++...|-+- |-.| |...|...+ ..++-..++.... +..++.. -+.+.
T Consensus 315 ~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l-------~~~q~~~l~~~l~---~~~~~~s~~~k~l~~h~c~ 384 (932)
T KOG2053|consen 315 DKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHL-------NIDQLKSLMSKLV---LADDDSSGDEKVLQQHLCV 384 (932)
T ss_pred HHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccC-------CHHHHHHHHHHhh---ccCCcchhhHHHHHHHHHH
Confidence 3 3457777766555443 5544 222222211 1112222222221 1111111 01222
Q ss_pred HHHHhhcCC-----HHHHHHHHHhC------------CCCCC---------HHHHHHHHHHHHHcCCHH---HHHHHHHH
Q 043490 357 VDLLGRVGR-----ILEAEKLIREM------------PMEPD---------SVIWSVLLGSCRKHGETR---LAELAATK 407 (589)
Q Consensus 357 i~~~~~~g~-----~~~A~~~~~~m------------~~~p~---------~~~~~~ll~~~~~~g~~~---~a~~~~~~ 407 (589)
+....-.|. -+.-..++.+. +.-|+ .-+.+.|+..|.+.++.. +|+-+++.
T Consensus 385 l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~ 464 (932)
T KOG2053|consen 385 LLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLEN 464 (932)
T ss_pred HHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 222222221 11112222111 11122 234577888899988754 56667777
Q ss_pred HhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCccCC
Q 043490 408 LKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVRKYP 451 (589)
Q Consensus 408 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 451 (589)
.....|.|..+-..|+.+|.-.|-+..|..+++.+.-+.++.+.
T Consensus 465 glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 465 GLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 77888988888889999999999999999999998877776553
No 124
>PLN02789 farnesyltranstransferase
Probab=98.18 E-value=0.0011 Score=64.74 Aligned_cols=216 Identities=13% Similarity=0.071 Sum_probs=151.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCcC-cHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH--
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWC-TFSIVLKACAGLV-TERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSI-- 267 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~-- 267 (589)
...++.++|+.+..++++. .|+.. .|+.--.++...+ +++++...++.+++.. +.+..+|+...-.+.+.|+.
T Consensus 48 ~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 48 ASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 7778999999999999874 45544 4444444445556 6799999999998876 56667787666566666653
Q ss_pred HHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhcc---Cc----HHHHHH
Q 043490 268 SLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHA---GL----VQEGNK 335 (589)
Q Consensus 268 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~---g~----~~~a~~ 335 (589)
+++..+++++. .+|..+|+.....+...|+++++++.++++ ...| |...|+.....+.+. |. .++..+
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 67788887776 457789999999999999999999999999 5555 455666655555443 22 245666
Q ss_pred HHHHhHHhcCCcc-CcchHHHHHHHHhhc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC------------
Q 043490 336 VFHSMLENHGVVP-QLDHYACMVDLLGRV----GRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHG------------ 396 (589)
Q Consensus 336 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~----g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g------------ 396 (589)
+...++.. .| |...|+.+...|... ++..+|.+++.+. ...| +......|+..|....
T Consensus 205 y~~~aI~~---~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 205 YTIDAILA---NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHh---CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 66555542 45 677888888888773 4456788888776 4445 4777888888887532
Q ss_pred ------CHHHHHHHHHHHhhcCC
Q 043490 397 ------ETRLAELAATKLKQLEP 413 (589)
Q Consensus 397 ------~~~~a~~~~~~~~~~~p 413 (589)
..++|..+++.+.+.+|
T Consensus 282 ~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred cccccccHHHHHHHHHHHHhhCc
Confidence 23556666666655555
No 125
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.00054 Score=68.17 Aligned_cols=213 Identities=16% Similarity=0.076 Sum_probs=140.1
Q ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh----------HHHHHH
Q 043490 220 SIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLV----------SWNSIL 289 (589)
Q Consensus 220 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~li 289 (589)
.-+.++.-+..+++.+.+-+...+... .+..-++....+|...|.+..+...-+...+..-. +...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345555556666777777777666654 45556666677777777776665554443322111 122233
Q ss_pred HHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcc-hHHHHHHHHhhcCC
Q 043490 290 KAYALHGQAKEALQLFSNM---NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLD-HYACMVDLLGRVGR 365 (589)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~m---~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~ 365 (589)
.+|.+.++++.|+..|++. ...||. ..+....+++.+...... -+.|... --..=...+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 4566667777777777776 222221 112233344444333221 2233221 11111456778899
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 366 ILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 366 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
+..|...+.++ ...| |...|.....+|.+.|++..|..-.+..++++|+....|..=+.++....+|+.|.+.|.+-.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 4456 488899999999999999999999999999999999999988888989999999999998877
Q ss_pred cCC
Q 043490 444 GSR 446 (589)
Q Consensus 444 ~~~ 446 (589)
+.+
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 655
No 126
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.16 E-value=5.5e-05 Score=63.85 Aligned_cols=93 Identities=14% Similarity=0.015 Sum_probs=81.8
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhc
Q 043490 352 HYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLS 429 (589)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 429 (589)
..-.+...+...|++++|.++|+-. .+.|. ..-|-.|...|...|++++|+..+.++..++|+|+.++..+..+|...
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 3444556677889999999999988 45564 778889999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhc
Q 043490 430 GSFNKARLIRKEMKG 444 (589)
Q Consensus 430 g~~~~a~~~~~~m~~ 444 (589)
|+.+.|++.|+....
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=0.001 Score=65.73 Aligned_cols=118 Identities=19% Similarity=0.187 Sum_probs=94.6
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 043490 324 CSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLA 401 (589)
Q Consensus 324 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a 401 (589)
....|.+++|+..++.+.+. .+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 34568888888888887654 2335555666778888999999999999888 56677 66777788889999999999
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 402 ELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
+.+++.....+|.|+..|..|..+|...|+..++...+.+..
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999988889899999999999988888888877776654
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.11 E-value=0.00031 Score=76.35 Aligned_cols=193 Identities=7% Similarity=0.030 Sum_probs=132.8
Q ss_pred CHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CC-----------
Q 043490 215 DWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YH----------- 280 (589)
Q Consensus 215 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~----------- 280 (589)
+...+..|+..+-..+++++|.++.+...+.. +.....|-.+...|...++.+++..+ .+. ..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHH
Confidence 34456667777777777777777777555543 33334444444466666666665555 222 11
Q ss_pred --------ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCc
Q 043490 281 --------DLVSWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQL 350 (589)
Q Consensus 281 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 350 (589)
+..++..+..+|-+.|+.++|..+|+++ ...| |..+.+.+...++.. ++++|.+++...+..
T Consensus 107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------- 178 (906)
T PRK14720 107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR------- 178 (906)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-------
Confidence 1245666788888999999999999999 7767 456888888888888 999999998877654
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhC----------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043490 351 DHYACMVDLLGRVGRILEAEKLIREM----------------------PMEPDSVIWSVLLGSCRKHGETRLAELAATKL 408 (589)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m----------------------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 408 (589)
|...+++.++.+++.++ +..--+.++-.+-..|...++++++..+++.+
T Consensus 179 ---------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 179 ---------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred ---------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 33333444444444443 22223445555667788899999999999999
Q ss_pred hhcCCCChhHHHHHHHHhh
Q 043490 409 KQLEPGDSLGFVQMSNIYC 427 (589)
Q Consensus 409 ~~~~p~~~~~~~~l~~~~~ 427 (589)
++.+|.|..+..-++..|.
T Consensus 250 L~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 250 LEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhcCCcchhhHHHHHHHHH
Confidence 9999999888888888875
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.09 E-value=4e-05 Score=65.01 Aligned_cols=96 Identities=21% Similarity=0.174 Sum_probs=77.6
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhh
Q 043490 351 DHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCL 428 (589)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 428 (589)
.....+...+...|++++|.+.|+.. ...| +...|..+...+...|+++.|...++++.+.+|.++..+..+..+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44556667777888888888888776 4345 477788888888888999999999999888888888888889999999
Q ss_pred cCChHHHHHHHHHHhcCC
Q 043490 429 SGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 429 ~g~~~~a~~~~~~m~~~~ 446 (589)
.|++++|.+.++...+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 98 LGEPESALKALDLAIEIC 115 (135)
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 999999999988777643
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.08 E-value=0.0001 Score=73.23 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=98.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 043490 317 FVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRK 394 (589)
Q Consensus 317 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 394 (589)
..+|+..+...++++.|.++|+++.+. .|+ ....|+..+...++-.+|.+++++. ...| |...+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445666666778888888888887643 243 5556777777778888888888777 3234 56777777778899
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 395 HGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 395 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
.++++.|..+.+++.+..|.+..+|..|+.+|.+.|++++|...++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999875
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.06 E-value=8.1e-06 Score=50.56 Aligned_cols=35 Identities=34% Similarity=0.659 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 043490 169 ISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDW 216 (589)
Q Consensus 169 ~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 216 (589)
++||++|.+| ++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~-------------~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGL-------------CKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHH-------------HHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 4799999999 9999999999999999999999983
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.05 E-value=0.00089 Score=66.11 Aligned_cols=146 Identities=21% Similarity=0.217 Sum_probs=115.9
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH-HHHHHhccCcHHHHHHHHHHhHHhcCCccC-cchHHHHH
Q 043490 281 DLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDSATFVS-LLSACSHAGLVQEGNKVFHSMLENHGVVPQ-LDHYACMV 357 (589)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 357 (589)
....+.-....+...|+.++|+..++.+ +-.||..-|.. ....+...++.++|.+.++.++. ..|+ ....-.+.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a 381 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLA 381 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHH
Confidence 3444555555667889999999999999 77787666554 45678899999999999999874 4666 44566778
Q ss_pred HHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHH
Q 043490 358 DLLGRVGRILEAEKLIREM--PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKA 435 (589)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 435 (589)
.+|.+.|++.+|..++++. ...-|+..|..|..+|...|+..++... ..+.|.-.|+|+.|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHH
Confidence 9999999999999999988 3334699999999999999998776554 45667889999999
Q ss_pred HHHHHHHhcCC
Q 043490 436 RLIRKEMKGSR 446 (589)
Q Consensus 436 ~~~~~~m~~~~ 446 (589)
...+....++.
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 99998887653
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.99 E-value=0.00087 Score=72.13 Aligned_cols=142 Identities=9% Similarity=0.086 Sum_probs=116.8
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHH
Q 043490 247 FEDDTVIANALIHAYARCGSISLSKQVFDKMT--YH-DLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDSA-TFVSLL 321 (589)
Q Consensus 247 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-t~~~ll 321 (589)
.+.++..+-.|.......|.+++|..+++... .| +...+..++..+.+.+++++|+..+++. ...|+.. ....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 45678889999999999999999999999987 34 5568888999999999999999999999 8888765 455666
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 043490 322 SACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM--PMEPDSVIWSVLLG 390 (589)
Q Consensus 322 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~ 390 (589)
.++.+.|++++|..+|+++... ..-+...+..+..++-..|+.++|...|++. ...|....|+.++.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 6888999999999999999752 2224668888899999999999999999988 33455666665543
No 134
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.95 E-value=0.028 Score=56.44 Aligned_cols=144 Identities=10% Similarity=0.045 Sum_probs=103.9
Q ss_pred HHHHHHHHHhC----CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHH
Q 043490 298 AKEALQLFSNM----NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKL 372 (589)
Q Consensus 298 ~~~A~~~~~~m----~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 372 (589)
.+...+.+++. ..+|+ .+|..+++.-.+..-+..|+.+|.+..+. +..+ ++.++++++.-|+ .++.+-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 44555566666 33343 46777788777888889999999988655 5555 7778888887665 5677888998
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CC-CChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 373 IREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQL--EP-GDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 373 ~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
|+-- .--+| ..-....+.-+...++-..+..+|++++.. .| .....|..++.--+.-|+...+.++-+++..
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 8765 22234 444566777778888889999999998876 22 2346788888888889999988888877654
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.95 E-value=0.028 Score=56.39 Aligned_cols=426 Identities=13% Similarity=0.122 Sum_probs=241.1
Q ss_pred CChhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCcchHHHHH
Q 043490 3 HSTQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--RNVVSWTALI 80 (589)
Q Consensus 3 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li 80 (589)
-|..+|+.|++-+... -.++++..++++...+| ..+..|..-+..-.+..+++..+++|.+... -++..|..-|
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP---~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFP---SSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCC---CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 3677899999977666 89999999999998887 8889999999999999999999999998653 4677787777
Q ss_pred HHHHh-CCChh----HHHHHHHHHHhc--cCCCcee-HHHHHHHhc-------------hhhHHHHHHHHHHhcCCCchh
Q 043490 81 SGYAQ-HGNAE----ECFRLFCSLLQY--FFPNEFS-LASVLISCD-------------YLHGKLVHALALKFSLDAHVY 139 (589)
Q Consensus 81 ~~~~~-~g~~~----~A~~~~~~m~~~--~~p~~~t-~~~~l~a~~-------------~~~~~~~~~~~~~~g~~~~~~ 139 (589)
+---+ +|+.. .-.+.|+-.... ..+-+.+ |..-+.-.. ++..+.+...++..-+..=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 63332 22222 223334444443 2222222 222222111 333334444333222111111
Q ss_pred HHHHH------HH------HHh-c-CCHHHHHHHHhhCCC------CCh---------------hHHHHHHHHHHcCCcH
Q 043490 140 VANAL------IN------MYS-K-SCADEAWKVFENMEF------RNV---------------ISWNSMIAAFRACKLE 184 (589)
Q Consensus 140 ~~~~l------i~------~y~-~-g~~~~A~~lf~~m~~------~~~---------------~~~~~li~~~~~~g~~ 184 (589)
.|+-. |+ +-+ + ..+-.|++++++... ++. ..|-.+|.---.++.-
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 11110 00 001 1 233455555554421 111 1244444321000000
Q ss_pred HHHHHHHHHcCCH--HHHHHHHHH-HHHcCCCCCHHHH-HHHHH----HHhCcCc-------HHHHHHHHHHHHHhCCCC
Q 043490 185 AQAIELFAKMKNE--EEALFLFRQ-LQREGMAPDWCTF-SIVLK----ACAGLVT-------ERHASAVHSLIAKYGFED 249 (589)
Q Consensus 185 ~~a~~~~~~~g~~--~~A~~~~~~-m~~~g~~p~~~t~-~~ll~----a~~~~~~-------~~~a~~i~~~~~~~g~~~ 249 (589)
...|.. .+..-.+++ |.--+..|+..-. ...+. .+...|+ -+++..+++..+..-...
T Consensus 254 -------t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 254 -------TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred -------cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 000000 111112222 2223344443221 11111 1122222 455666666666554444
Q ss_pred cHHHHHHHHHHHHhcC---CHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCC-CHHHHH
Q 043490 250 DTVIANALIHAYARCG---SISLSKQVFDKMT----YHDLVSWNSILKAYALHGQAKEALQLFSNM---NVQP-DSATFV 318 (589)
Q Consensus 250 ~~~~~~~li~~~~~~g---~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p-~~~t~~ 318 (589)
+..+|.++.+---..- ..+.....+++.. ..-..+|-..+..-.+..-.+.|..+|.+. +..+ +....+
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 5555555543221111 2444445555544 122346777777777778889999999999 5555 666778
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHH
Q 043490 319 SLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM---PMEPD--SVIWSVLLGSCR 393 (589)
Q Consensus 319 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~ 393 (589)
+++.-++ .++.+-|.++|+.-++++|-.| .--...++-+...++-..|..+|++. .+.|| ..+|..+|.-=.
T Consensus 407 A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES 483 (656)
T KOG1914|consen 407 ALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYES 483 (656)
T ss_pred HHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHH
Confidence 8887666 5889999999998877765433 34456788888999999999999998 23454 689999999999
Q ss_pred HcCCHHHHHHHHHHHhhcCCCC----hhHHHHHHHHhhhcCChHHHHHHHHHH
Q 043490 394 KHGETRLAELAATKLKQLEPGD----SLGFVQMSNIYCLSGSFNKARLIRKEM 442 (589)
Q Consensus 394 ~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 442 (589)
.-|+...+.++-++....-|.+ ...-..+++-|.-.+.+..-..-++.|
T Consensus 484 ~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 484 NVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 9999999999988876654411 123345666666666655444444433
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.94 E-value=0.00023 Score=70.79 Aligned_cols=125 Identities=14% Similarity=0.185 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcH
Q 043490 253 IANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLV 330 (589)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~ 330 (589)
...+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++. ...| +...+..-...|.+.+++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 34455666666778888888888887666666666777777777778888888777 4444 444455555567777888
Q ss_pred HHHHHHHHHhHHhcCCccC-cchHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 043490 331 QEGNKVFHSMLENHGVVPQ-LDHYACMVDLLGRVGRILEAEKLIREMPMEP 380 (589)
Q Consensus 331 ~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 380 (589)
+.|.++.+++.+ ..|+ ..+|..|...|.+.|++++|+..++.+|..|
T Consensus 251 ~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 251 ELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 888888877763 3554 4478888888888888888888888776544
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.90 E-value=2.4e-05 Score=48.09 Aligned_cols=34 Identities=32% Similarity=0.633 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 043490 168 VISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAP 214 (589)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p 214 (589)
+.+||++|.+| .+.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~-------------~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRAC-------------AKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHH-------------HHCCCHHHHHHHHHHHHHhCCCC
Confidence 36899999999 99999999999999999999988
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.90 E-value=2e-05 Score=48.77 Aligned_cols=33 Identities=33% Similarity=0.662 Sum_probs=30.3
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHhc-cCCC
Q 043490 74 VSWTALISGYAQHGNAEECFRLFCSLLQY-FFPN 106 (589)
Q Consensus 74 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~ 106 (589)
++||++|++|++.|++++|.++|++|.+. +.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 47999999999999999999999999988 7776
No 139
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=0.056 Score=55.88 Aligned_cols=195 Identities=12% Similarity=0.086 Sum_probs=122.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCC-CCcch------------HHHHHHHHHhCCChhHHHHHHHHHHhccCCC
Q 043490 40 QDLFVTNHLINMYAKFGYLDDARHLFDEMPK-RNVVS------------WTALISGYAQHGNAEECFRLFCSLLQYFFPN 106 (589)
Q Consensus 40 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~~~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 106 (589)
|.+..|..|...-...-.++.|+..|-+... +.+.. -.+=|++| -|++++|.++|-+|-+.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr---- 763 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR---- 763 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh----
Confidence 7788888888777777778888888876653 22111 11112222 47888888888777543
Q ss_pred ceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHc
Q 043490 107 EFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFENMEFR-----NVISWNSMIAAFRA 180 (589)
Q Consensus 107 ~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~~-----~~~~~~~li~~~~~ 180 (589)
...|.++.+ |++-...++++.-... -...|+.+...+..
T Consensus 764 -----------------------------------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~ 808 (1189)
T KOG2041|consen 764 -----------------------------------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAE 808 (1189)
T ss_pred -----------------------------------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHH
Confidence 234556666 7777666666553321 23578888888888
Q ss_pred CCcHHHHHHHHHHcCCHHHHHHHH------HHHHH--cCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHH
Q 043490 181 CKLEAQAIELFAKMKNEEEALFLF------RQLQR--EGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTV 252 (589)
Q Consensus 181 ~g~~~~a~~~~~~~g~~~~A~~~~------~~m~~--~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 252 (589)
...|++|.+.|.+.|+.+.-.+.+ .++.. ..++-|....-.+..++.+.|.-++|.+.|- +.+. |
T Consensus 809 ~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L---r~s~-p--- 881 (1189)
T KOG2041|consen 809 MMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYL---RRSL-P--- 881 (1189)
T ss_pred HHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHH---hccC-c---
Confidence 888888888888888776544433 22221 2244455666677777788888887776663 2232 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhH
Q 043490 253 IANALIHAYARCGSISLSKQVFDKMTYHDLVS 284 (589)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 284 (589)
.+-++.+....++.+|.++-++..-|.+.+
T Consensus 882 --kaAv~tCv~LnQW~~avelaq~~~l~qv~t 911 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELAQRFQLPQVQT 911 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 133455666777777777777665554443
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.81 E-value=0.00043 Score=58.63 Aligned_cols=99 Identities=9% Similarity=0.034 Sum_probs=56.3
Q ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHc
Q 043490 219 FSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALH 295 (589)
Q Consensus 219 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 295 (589)
...+...+...|+.+.|.+.+..+...+ +.+...+..+...|.+.|++++|...|+... ..+...|..+...|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 4444445556666666666666665554 4455566666666666666666666666553 22344555555566666
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHH
Q 043490 296 GQAKEALQLFSNM-NVQPDSATFV 318 (589)
Q Consensus 296 g~~~~A~~~~~~m-~~~p~~~t~~ 318 (589)
|+.++|+..|++. ...|+...+.
T Consensus 99 g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 99 GEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCHHHHHHHHHHHHHhccccchHH
Confidence 6666666666655 5555444433
No 141
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.80 E-value=0.00028 Score=54.83 Aligned_cols=93 Identities=17% Similarity=0.201 Sum_probs=74.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcC
Q 043490 353 YACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSG 430 (589)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 430 (589)
+..+...+...|++++|...+++. ...|+ ...+..+...+...++++.|...++...+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888876 33443 4677778888888899999999999998888888788888999999999
Q ss_pred ChHHHHHHHHHHhcC
Q 043490 431 SFNKARLIRKEMKGS 445 (589)
Q Consensus 431 ~~~~a~~~~~~m~~~ 445 (589)
++++|...+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988877643
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.78 E-value=0.0088 Score=65.39 Aligned_cols=222 Identities=14% Similarity=0.120 Sum_probs=130.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCcc-hHHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHH
Q 043490 40 QDLFVTNHLINMYAKFGYLDDARHLFDEMPK--RNVV-SWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLIS 116 (589)
Q Consensus 40 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a 116 (589)
.+...+..|+..|...+++++|.++.+.-.+ |+.. .|-.+...+.+.++..++..+ .+... .++..-|..+-.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~- 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEH- 104 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHHH-
Confidence 5566677777777777777777777664432 3332 222233355556666665555 33333 111111111111
Q ss_pred hchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCC---CChhHHHHHHHHHHcCCcHHHHHHHH-
Q 043490 117 CDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFENMEF---RNVISWNSMIAAFRACKLEAQAIELF- 191 (589)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~- 191 (589)
+...+.. ...+...+-.|..+|.+ |+.++|..+++++.+ .|+...|.+...|... +.++|++++
T Consensus 105 --------~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 105 --------ICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred --------HHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 1111111 22334466778889999 999999999999875 4677888888888666 777666553
Q ss_pred ------HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHhc
Q 043490 192 ------AKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKY-GFEDDTVIANALIHAYARC 264 (589)
Q Consensus 192 ------~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~~~~~ 264 (589)
...+++.++.+++.++... .|+ +.+.-.++.+.+... |...-+.++-.|-..|-+.
T Consensus 174 KAV~~~i~~kq~~~~~e~W~k~~~~--~~~---------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~ 236 (906)
T PRK14720 174 KAIYRFIKKKQYVGIEEIWSKLVHY--NSD---------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL 236 (906)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHhc--Ccc---------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh
Confidence 4556777777777777663 232 222333333333333 3334455566667777788
Q ss_pred CCHHHHHHHHhhcC---CCChhHHHHHHHHHH
Q 043490 265 GSISLSKQVFDKMT---YHDLVSWNSILKAYA 293 (589)
Q Consensus 265 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 293 (589)
.+++++..+|..+. ..|..+..-++.+|.
T Consensus 237 ~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 237 EDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 88888888888776 335556666666665
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.76 E-value=0.00099 Score=57.15 Aligned_cols=123 Identities=16% Similarity=0.148 Sum_probs=74.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHH
Q 043490 317 FVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPDS----VIWSVLLG 390 (589)
Q Consensus 317 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~ 390 (589)
|..++.+.. .++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.. ...||. .....|..
T Consensus 15 y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 444444443 5667777777777665432221 1122333446666777777777777776 212332 23444566
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHH
Q 043490 391 SCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKE 441 (589)
Q Consensus 391 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 441 (589)
.+...|++++|...++... ..+..+..+..+.++|.+.|++++|+..|+.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777788888877775532 2233455667788888888888888887765
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.74 E-value=0.00068 Score=55.74 Aligned_cols=103 Identities=15% Similarity=0.112 Sum_probs=56.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 043490 316 TFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD----SVIWSVLL 389 (589)
Q Consensus 316 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll 389 (589)
++..+...+...|++++|.+.|..+.+.+.-.+ ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455555566666666666666654321111 1223444556666666666666666655 22222 34455556
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCChhH
Q 043490 390 GSCRKHGETRLAELAATKLKQLEPGDSLG 418 (589)
Q Consensus 390 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 418 (589)
.++...|+.+.|...++++.+..|++..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 66666666666666666666666655443
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.74 E-value=5e-05 Score=58.21 Aligned_cols=78 Identities=18% Similarity=0.173 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHH
Q 043490 363 VGRILEAEKLIREM----PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLI 438 (589)
Q Consensus 363 ~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 438 (589)
.|++++|+.+++++ +..|+...|-.+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666777776666 2122445555677888888888888888877 566665666666778888888888888888
Q ss_pred HHH
Q 043490 439 RKE 441 (589)
Q Consensus 439 ~~~ 441 (589)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.68 E-value=7.4e-05 Score=45.82 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHhc-cCC
Q 043490 73 VVSWTALISGYAQHGNAEECFRLFCSLLQY-FFP 105 (589)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p 105 (589)
+.+||++|.+|++.|+++.|.++|++|.+. ++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 368999999999999999999999999887 555
No 147
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.036 Score=57.22 Aligned_cols=188 Identities=11% Similarity=0.071 Sum_probs=103.4
Q ss_pred CChhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCC--------ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc
Q 043490 3 HSTQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQ--------DLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVV 74 (589)
Q Consensus 3 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~ 74 (589)
|.+..|..|.......-.++.|...|-+... .+|++. +.....+=+. +-.|++++|++++-.|.++|..
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhhh
Confidence 6777787777777776777777776654422 222211 1111111222 2258999999999999887754
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhccCCCce----eHHHHHHHhc----hhhHHHHHHHHHHhcCCCchhHHHHHHH
Q 043490 75 SWTALISGYAQHGNAEECFRLFCSLLQYFFPNEF----SLASVLISCD----YLHGKLVHALALKFSLDAHVYVANALIN 146 (589)
Q Consensus 75 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~----t~~~~l~a~~----~~~~~~~~~~~~~~g~~~~~~~~~~li~ 146 (589)
|..+.+.|++-...++++.--.. .|.. .|..+-...+ ++.+.+.+.+.. + ....+.
T Consensus 767 -----ielr~klgDwfrV~qL~r~g~~d--~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~------~---~e~~~e 830 (1189)
T KOG2041|consen 767 -----IELRKKLGDWFRVYQLIRNGGSD--DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG------D---TENQIE 830 (1189)
T ss_pred -----HHHHHhhhhHHHHHHHHHccCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------c---hHhHHH
Confidence 44455556665555554321100 0110 1111111111 222222222110 0 123445
Q ss_pred HHhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043490 147 MYSK-SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQRE 210 (589)
Q Consensus 147 ~y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~ 210 (589)
+|.+ ..+++-+.+-..+++. ....-.|...+.+.|..++|.+.|.+.++++.|+..-.++.+.
T Consensus 831 cly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 5555 5566666666666553 3445567788888999999999999998888887666555543
No 148
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.0058 Score=55.71 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=7.8
Q ss_pred HHHhcCCHHHHHHHHhh
Q 043490 260 AYARCGSISLSKQVFDK 276 (589)
Q Consensus 260 ~~~~~g~~~~A~~~~~~ 276 (589)
.|...|++++|++....
T Consensus 117 i~~~~~~~deAl~~~~~ 133 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHL 133 (299)
T ss_pred HhhcCCChHHHHHHHhc
Confidence 34444444444444444
No 149
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.0034 Score=56.75 Aligned_cols=180 Identities=17% Similarity=0.186 Sum_probs=116.5
Q ss_pred cCCHHHHHHHHhhcC--------CCChh-HHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHH-HHHhccCcHH
Q 043490 264 CGSISLSKQVFDKMT--------YHDLV-SWNSILKAYALHGQAKEALQLFSNM--NVQPDSATFVSLL-SACSHAGLVQ 331 (589)
Q Consensus 264 ~g~~~~A~~~~~~~~--------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~ll-~a~~~~g~~~ 331 (589)
..+.++..+++..+. .++.. .|..++-+....|+.+-|..+++++ .. |.+.-...+= --+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 356777777777665 12332 3444555566677788888888887 33 5443222221 1223457788
Q ss_pred HHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 043490 332 EGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM--PMEPDSVIWSVLLGSCRKHGETRLAELAATKLK 409 (589)
Q Consensus 332 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 409 (589)
+|.++++.++++. +.|..+|-.=+.+.-..|+--+|++-+.+. .+-.|...|.-|...|...|+++.|.--++++.
T Consensus 104 ~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888876542 335556666666666667666777666555 344578888888888888888888888888888
Q ss_pred hcCCCChhHHHHHHHHhhhcC---ChHHHHHHHHHHhcCC
Q 043490 410 QLEPGDSLGFVQMSNIYCLSG---SFNKARLIRKEMKGSR 446 (589)
Q Consensus 410 ~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~ 446 (589)
-..|.++..+..+++.+.-.| +.+-+++.+.+..+..
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 888888777777877765554 3455666666665543
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.65 E-value=0.00064 Score=55.90 Aligned_cols=97 Identities=13% Similarity=0.049 Sum_probs=81.5
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hhHHHHH
Q 043490 351 DHYACMVDLLGRVGRILEAEKLIREM-PMEPD----SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGD---SLGFVQM 422 (589)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 422 (589)
.++..+...+.+.|++++|.+.|+.+ ...|+ ...+..+..++.+.|+++.|...++.+....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35667788889999999999999988 33343 3566778899999999999999999999988764 4578899
Q ss_pred HHHhhhcCChHHHHHHHHHHhcCCC
Q 043490 423 SNIYCLSGSFNKARLIRKEMKGSRV 447 (589)
Q Consensus 423 ~~~~~~~g~~~~a~~~~~~m~~~~~ 447 (589)
..+|.+.|++++|.+.++++.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 9999999999999999999987643
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.61 E-value=7.7e-05 Score=44.60 Aligned_cols=31 Identities=35% Similarity=0.710 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 043490 169 ISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGM 212 (589)
Q Consensus 169 ~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~ 212 (589)
++||+||++| .+.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~-------------~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGY-------------CKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHH-------------HccchHHHHHHHHHHHhHCcC
Confidence 5899999999 999999999999999998874
No 152
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0074 Score=55.06 Aligned_cols=148 Identities=13% Similarity=0.077 Sum_probs=107.2
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhh----c
Q 043490 289 LKAYALHGQAKEALQLFSNM-NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGR----V 363 (589)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~ 363 (589)
...|...|++++|++..... +++ .... =...+.+..+.+.|.+.++.|.+ + .+..+.+.|..++.+ .
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE--~~Al--~VqI~lk~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLE--AAAL--NVQILLKMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhccc
Confidence 34578889999999988874 322 2222 22334456788888888888853 2 234456656655544 4
Q ss_pred CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHH-HHHHH
Q 043490 364 GRILEAEKLIREM--PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKA-RLIRK 440 (589)
Q Consensus 364 g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~ 440 (589)
+.+.+|.-+|++| ...|+..+.+-...++...|++++|+.+++.++..++.++.+...++-.-...|.-.++ .+.+.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 5788999999999 46788888888888999999999999999999999988888888888777777776555 44555
Q ss_pred HHhc
Q 043490 441 EMKG 444 (589)
Q Consensus 441 ~m~~ 444 (589)
.++.
T Consensus 267 QLk~ 270 (299)
T KOG3081|consen 267 QLKL 270 (299)
T ss_pred HHHh
Confidence 5544
No 153
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.024 Score=51.47 Aligned_cols=164 Identities=15% Similarity=0.163 Sum_probs=109.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHH---HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCc
Q 043490 255 NALIHAYARCGSISLSKQVFDKMTYHDLVSWNSI---LKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGL 329 (589)
Q Consensus 255 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~ 329 (589)
.-++-+...+|+.+.|..+++.+..+=+-++... ..-+-..|++++|+++|+.. .-.| |.+++..=+...-..|.
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC
Confidence 3444445556777777777666542111111111 11233468888888888888 4445 55666655555556677
Q ss_pred HHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc---CCHHHHHHH
Q 043490 330 VQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKH---GETRLAELA 404 (589)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~---g~~~~a~~~ 404 (589)
.-+|.+-+....+. +..|.+.|.-+.+.|...|++++|.-.++++ -+.|- ...+..+...+.-. .+.+.+.+.
T Consensus 136 ~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 136 NLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred cHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77888877777664 4668889999999999999999999999998 34554 44555555554433 367889999
Q ss_pred HHHHhhcCCCChhHHH
Q 043490 405 ATKLKQLEPGDSLGFV 420 (589)
Q Consensus 405 ~~~~~~~~p~~~~~~~ 420 (589)
+.+.+++.|.+...+.
T Consensus 214 y~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 214 YERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHhChHhHHHHH
Confidence 9999999985554433
No 154
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.58 E-value=0.00024 Score=52.05 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcC-ChHHHHHHHHHHhc
Q 043490 381 DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSG-SFNKARLIRKEMKG 444 (589)
Q Consensus 381 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 444 (589)
++.+|..+...+...|++++|+..|+++++.+|.++.+|..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999 79999999987654
No 155
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.00065 Score=62.96 Aligned_cols=98 Identities=16% Similarity=0.109 Sum_probs=68.2
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHH
Q 043490 324 CSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRL 400 (589)
Q Consensus 324 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 400 (589)
..+.+++++|+..|...+ .+.| |..-|..-..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 345566777777776665 3454 4445555566777777777777766655 55665 6788888888888888888
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHH
Q 043490 401 AELAATKLKQLEPGDSLGFVQMSN 424 (589)
Q Consensus 401 a~~~~~~~~~~~p~~~~~~~~l~~ 424 (589)
|++.|++.++++|++......|-.
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHH
Confidence 888888888888877744444433
No 156
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.52 E-value=0.00011 Score=43.87 Aligned_cols=29 Identities=34% Similarity=0.659 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 043490 74 VSWTALISGYAQHGNAEECFRLFCSLLQY 102 (589)
Q Consensus 74 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 102 (589)
++||+||++|++.|++++|.++|++|.+.
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 47899999999999999999999988764
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.50 E-value=0.00073 Score=67.44 Aligned_cols=104 Identities=17% Similarity=0.122 Sum_probs=84.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC
Q 043490 320 LLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHG 396 (589)
Q Consensus 320 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g 396 (589)
-...+...|++++|.+.|..+++. .| +...|..+..+|.+.|++++|+..++++ .+.|+ ...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 345566789999999999988753 44 5567888888999999999999999888 55664 778888888999999
Q ss_pred CHHHHHHHHHHHhhcCCCChhHHHHHHHHh
Q 043490 397 ETRLAELAATKLKQLEPGDSLGFVQMSNIY 426 (589)
Q Consensus 397 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 426 (589)
+++.|+..++++++++|.++.....+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999998877766654443
No 158
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.49 E-value=0.0072 Score=51.80 Aligned_cols=22 Identities=18% Similarity=0.063 Sum_probs=9.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHH
Q 043490 353 YACMVDLLGRVGRILEAEKLIR 374 (589)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~ 374 (589)
+....+.|.+.|+.++|...|+
T Consensus 121 ~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 121 AELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH
Confidence 3334444444444444444443
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.45 E-value=0.0045 Score=64.60 Aligned_cols=64 Identities=25% Similarity=0.215 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 382 SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 382 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
...|.++.-.....|++++|...++++++++| +...|..++.+|...|+.++|...+++....+
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44555554444555666666666666666666 45566666666666666666666666554433
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.44 E-value=0.0015 Score=57.85 Aligned_cols=80 Identities=21% Similarity=0.100 Sum_probs=60.7
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHh
Q 043490 352 HYACMVDLLGRVGRILEAEKLIREM-PMEPD----SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIY 426 (589)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 426 (589)
.+..+...|.+.|++++|...|++. ...|+ ...|..+...+.+.|+++.|...++++.+..|.+...+..+..+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4556666677777777777777766 22222 457778888888889999999999999888888888888888888
Q ss_pred hhcCC
Q 043490 427 CLSGS 431 (589)
Q Consensus 427 ~~~g~ 431 (589)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 87776
No 161
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.42 E-value=0.00049 Score=49.65 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=44.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 388 LLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 388 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
+...+...|++++|+..++++++..|.++..+..+..++...|++++|...+++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677788888888888888888888888888888888888888888888777643
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.42 E-value=0.0034 Score=55.63 Aligned_cols=126 Identities=16% Similarity=0.149 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHH
Q 043490 282 LVSWNSILKAYALHGQAKEALQLFSNM-NVQPD----SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYAC 355 (589)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 355 (589)
...+..+...+...|++++|+..|++. ...|+ ...+..+...+.+.|++++|...+...... .| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 345556666666677777777777766 33332 235555666666666777776666665432 23 2334444
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCC
Q 043490 356 MVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGS 431 (589)
Q Consensus 356 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 431 (589)
+...|...|+...+..-++.. ...++.|.+.++++.+.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 455555555544433322211 012577888888888888855 5555555555444
No 163
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.38 E-value=0.15 Score=49.27 Aligned_cols=272 Identities=17% Similarity=0.128 Sum_probs=180.0
Q ss_pred CCHHHHHHHHhhCC---CCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHH
Q 043490 151 SCADEAWKVFENME---FRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWC--TFSIVLKA 225 (589)
Q Consensus 151 g~~~~A~~lf~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a 225 (589)
|+-..|+++-.+-. ..|....--++.+-. -.-.|++++|.+-|+.|... |... -+..|.-.
T Consensus 98 Gda~lARkmt~~~~~llssDqepLIhlLeAQa-----------al~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyle 163 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEPLIHLLEAQA-----------ALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLE 163 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchHHHHHHHHHH-----------HHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHH
Confidence 67777776655432 233333333333220 14568889999999998762 2221 22333334
Q ss_pred HhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC-----CCChh--HHHHHHHHHH---Hc
Q 043490 226 CAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT-----YHDLV--SWNSILKAYA---LH 295 (589)
Q Consensus 226 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~ 295 (589)
..+.|+.+.|++.-+..-..- +.-.....+++...+..|+++.|+++.+.-. ++++. .-..|+.+-+ -.
T Consensus 164 Aqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 467888888888887776553 3345677888999999999999999998654 44543 2223333322 13
Q ss_pred CCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHH
Q 043490 296 GQAKEALQLFSNM-NVQPDSA-TFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLI 373 (589)
Q Consensus 296 g~~~~A~~~~~~m-~~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 373 (589)
-+...|.+.-.+. ++.||-+ .-..-..++.+.|++.++-.+++.+-+. .|.+..+. +-.+.|.|+ .+..-+
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~--lY~~ar~gd--ta~dRl 315 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIAL--LYVRARSGD--TALDRL 315 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHH--HHHHhcCCC--cHHHHH
Confidence 4566677766666 7888865 3444566889999999999999988654 55544432 223345554 333333
Q ss_pred HhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhc-CChHHHHHHHHHHhcC
Q 043490 374 REM----PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLS-GSFNKARLIRKEMKGS 445 (589)
Q Consensus 374 ~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 445 (589)
++. .++|| ..+.-.+..+....|++..|..-.+.+....| ....|..|.++-... |+-.+++..+.+-.+.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 332 44565 77777888899999999999999999999998 567888999887655 9999999988876653
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.37 E-value=0.0028 Score=63.23 Aligned_cols=100 Identities=13% Similarity=0.151 Sum_probs=79.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcC
Q 043490 288 ILKAYALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVG 364 (589)
Q Consensus 288 li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 364 (589)
-...+...|++++|++.|++. ...|+ ...|..+..++...|++++|...++.+++. .| +...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhC
Confidence 345677889999999999999 77775 567778888999999999999999988743 45 5667888899999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 043490 365 RILEAEKLIREM-PMEPDSVIWSVLLG 390 (589)
Q Consensus 365 ~~~~A~~~~~~m-~~~p~~~~~~~ll~ 390 (589)
++++|...|++. .+.|+.......+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999988 55666444444443
No 165
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.35 E-value=0.17 Score=49.29 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=58.8
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 043490 258 IHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNMNVQPDSATFVSLLSACSHAGLVQEGNKVF 337 (589)
Q Consensus 258 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 337 (589)
|.-+...|+...|.++-....-||-.-|-..+.+|+..+++++-.++... +-.++.|...+.+|...|...+|..+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~~~~~eA~~yI 260 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKYGNKKEASKYI 260 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHCCCHHHHHHHH
Confidence 33444556666666666666666666666666666666666655543322 223355566666666666666666555
Q ss_pred HHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHh
Q 043490 338 HSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIRE 375 (589)
Q Consensus 338 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 375 (589)
..+ .+..-+.+|.++|++.+|.+.--+
T Consensus 261 ~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 261 PKI-----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HhC-----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 432 123455666666666666555433
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.34 E-value=0.001 Score=47.98 Aligned_cols=61 Identities=20% Similarity=0.234 Sum_probs=49.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh
Q 043490 356 MVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDS 416 (589)
Q Consensus 356 li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 416 (589)
+...+.+.|++++|.+.|++. ...|+ ...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 445677888889999888888 55675 78888899999999999999999999999999764
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.34 E-value=0.027 Score=57.58 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=93.3
Q ss_pred HHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHH
Q 043490 175 IAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIA 254 (589)
Q Consensus 175 i~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 254 (589)
...+...|+.++|+++...+|-.+-+.++=+++.. .+..+...+..-+-+...+..|.++|..|-..
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------- 776 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------- 776 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------
Confidence 34456678888888888888888777777666543 24445555555556677778888888776432
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 043490 255 NALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNMNVQPDSATFVSLLSACSHAGLVQEGN 334 (589)
Q Consensus 255 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~g~~~~a~ 334 (589)
.+++++....+++++|..+-++.++--...|-.-..-++...++++|.+.|. ++|+-.+|.
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfh-------------------kAGr~~EA~ 837 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFH-------------------KAGRQREAV 837 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHH-------------------HhcchHHHH
Confidence 3678889999999999999999885444444445556667777777765443 457777777
Q ss_pred HHHHHh
Q 043490 335 KVFHSM 340 (589)
Q Consensus 335 ~~~~~~ 340 (589)
++++++
T Consensus 838 ~vLeQL 843 (1081)
T KOG1538|consen 838 QVLEQL 843 (1081)
T ss_pred HHHHHh
Confidence 777766
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.33 E-value=0.0019 Score=57.05 Aligned_cols=93 Identities=18% Similarity=-0.043 Sum_probs=74.5
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 043490 350 LDHYACMVDLLGRVGRILEAEKLIREM-PMEPD----SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSN 424 (589)
Q Consensus 350 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 424 (589)
...|..+...+...|++++|+..|++. .+.|+ ..+|..+...+...|++++|+..++++.++.|.....+..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 345666777777889999999988887 33332 3578889999999999999999999999999988888888888
Q ss_pred Hhh-------hcCChHHHHHHHHHH
Q 043490 425 IYC-------LSGSFNKARLIRKEM 442 (589)
Q Consensus 425 ~~~-------~~g~~~~a~~~~~~m 442 (589)
+|. ..|++++|...+++-
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788888776666543
No 169
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.32 E-value=0.0038 Score=49.04 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=62.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhCcC--------cHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGM-APDWCTFSIVLKACAGLV--------TERHASAVHSLIAKYGFEDDTVIANALIHAYA 262 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~ 262 (589)
...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+-....+|+.|+..+++|+..+|+.++..+.
T Consensus 36 ~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 36 FENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 666999999999999999999 899999999999986542 34556788999999999999999999998876
Q ss_pred h
Q 043490 263 R 263 (589)
Q Consensus 263 ~ 263 (589)
+
T Consensus 116 k 116 (120)
T PF08579_consen 116 K 116 (120)
T ss_pred H
Confidence 5
No 170
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0037 Score=58.45 Aligned_cols=103 Identities=12% Similarity=0.040 Sum_probs=88.0
Q ss_pred ccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHhhcCCCChhHHHH
Q 043490 347 VPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKH---GETRLAELAATKLKQLEPGDSLGFVQ 421 (589)
Q Consensus 347 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 421 (589)
+-|...|-.|...|.+.|++..|..-|.+. .+.| +...+..+..++... ....++..+++++++.+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 348889999999999999999999999988 4444 477777777766544 34688999999999999999999999
Q ss_pred HHHHhhhcCChHHHHHHHHHHhcCCCcc
Q 043490 422 MSNIYCLSGSFNKARLIRKEMKGSRVRK 449 (589)
Q Consensus 422 l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 449 (589)
|...+...|++.+|...|+.|.+....-
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999876543
No 171
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.31 E-value=0.19 Score=48.74 Aligned_cols=242 Identities=18% Similarity=0.131 Sum_probs=162.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHhCCCCcHH--HHHHHHHHHHhcCCH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKAC--AGLVTERHASAVHSLIAKYGFEDDTV--IANALIHAYARCGSI 267 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~i~~~~~~~g~~~~~~--~~~~li~~~~~~g~~ 267 (589)
.-.|+-..|.++-.+-.+. +..|...+.-+|.+- .-.|+.+.|++-|+-|... |... -...|.-.--+.|..
T Consensus 95 agAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 95 AGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred hccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccH
Confidence 4457777776666554322 455666666677665 4569999999999999863 2221 122333344567899
Q ss_pred HHHHHHHhhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHH--HHHHHHHHHhc---cCcHHHHHH
Q 043490 268 SLSKQVFDKMTY---HDLVSWNSILKAYALHGQAKEALQLFSNM----NVQPDSA--TFVSLLSACSH---AGLVQEGNK 335 (589)
Q Consensus 268 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~--t~~~ll~a~~~---~g~~~~a~~ 335 (589)
+.|..+-+..-. .-...|.+.+...+..|+++.|+++.+.- -+.++.. .-..|+.+-.. ..+...|..
T Consensus 171 eaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 171 EAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 988888777652 23468899999999999999999999887 4566643 23334433221 224555555
Q ss_pred HHHHhHHhcCCccCcchHHH-HHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHhhcC
Q 043490 336 VFHSMLENHGVVPQLDHYAC-MVDLLGRVGRILEAEKLIREM-PMEPDSVIWSVLLGSCRKHGETRLA-ELAATKLKQLE 412 (589)
Q Consensus 336 ~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~~ 412 (589)
.-.+. ..+.||...-.. -..+|.+.|++.++-.+++.+ ...|...+|.... ..+.|+.... .+-.+++..+.
T Consensus 251 ~A~~a---~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk 325 (531)
T COG3898 251 DALEA---NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHHH---hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcC
Confidence 44333 356777654333 346789999999999999999 6678887775433 3455554332 23345566788
Q ss_pred CCChhHHHHHHHHhhhcCChHHHHHHHHHH
Q 043490 413 PGDSLGFVQMSNIYCLSGSFNKARLIRKEM 442 (589)
Q Consensus 413 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 442 (589)
|++......+..+-...|++..|+.--+..
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 999999999999999999998877655444
No 172
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.25 E-value=0.0034 Score=48.49 Aligned_cols=91 Identities=22% Similarity=0.202 Sum_probs=46.6
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 043490 320 LLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHG 396 (589)
Q Consensus 320 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 396 (589)
+...+...|++++|...++...+. .| +...+..+...+...|++++|.+.+++. ...| +..++..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 333444445555555555544322 12 1233444455555555555555555544 2222 2345556666666666
Q ss_pred CHHHHHHHHHHHhhcCC
Q 043490 397 ETRLAELAATKLKQLEP 413 (589)
Q Consensus 397 ~~~~a~~~~~~~~~~~p 413 (589)
+.+.|...+++..+..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66666666666665554
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.24 E-value=0.00059 Score=49.74 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=43.2
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 393 RKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 393 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
...|++++|+..++++.+..|++..++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45788888888888888888888888888888888888888888888877654
No 174
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.20 E-value=0.0039 Score=55.39 Aligned_cols=103 Identities=12% Similarity=0.188 Sum_probs=83.3
Q ss_pred HHHHHhhC--CCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCc----
Q 043490 156 AWKVFENM--EFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGL---- 229 (589)
Q Consensus 156 A~~lf~~m--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---- 229 (589)
-...|+.. ..+|-.+|..++..|.+... .+.|..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~--------~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp 104 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDV--------RRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVP 104 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCC--------CCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCccc
Confidence 34566665 46788889888888854432 56688888888999999999999999999999987432
Q ss_pred ------------CcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 043490 230 ------------VTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGS 266 (589)
Q Consensus 230 ------------~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~ 266 (589)
.+-+.|.+++++|...|+-||..++..|++.+++.+.
T Consensus 105 ~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 105 RNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 3456789999999999999999999999998887664
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.19 E-value=0.028 Score=54.23 Aligned_cols=143 Identities=15% Similarity=0.123 Sum_probs=77.5
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCccC----cchHHHHHHHHhhc
Q 043490 289 LKAYALHGQAKEALQLFSNMNVQPDSATFVSLLSACSHA-GLVQEGNKVFHSMLENHGVVPQ----LDHYACMVDLLGRV 363 (589)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~ 363 (589)
+..|...|++..|-.++.+ +...|... |++++|.+.|+....-+.-... ...+..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 4555556665555544444 34455555 6777777777665443221111 22455667778888
Q ss_pred CCHHHHHHHHHhC---CC-----CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-----hhHHHHHHHHhhh-
Q 043490 364 GRILEAEKLIREM---PM-----EPDSV-IWSVLLGSCRKHGETRLAELAATKLKQLEPGD-----SLGFVQMSNIYCL- 428 (589)
Q Consensus 364 g~~~~A~~~~~~m---~~-----~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----~~~~~~l~~~~~~- 428 (589)
|++++|.++|++. .. +.+.. .+-..+-.+...||+..|.+.+++....+|.- ......|+.+|-.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 8888888888776 11 11221 22233335566788888888888888877632 2223455666543
Q ss_pred -cCChHHHHHHHHHHh
Q 043490 429 -SGSFNKARLIRKEMK 443 (589)
Q Consensus 429 -~g~~~~a~~~~~~m~ 443 (589)
...++++..-|+.+.
T Consensus 249 D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSIS 264 (282)
T ss_dssp -CCCHHHHCHHHTTSS
T ss_pred CHHHHHHHHHHHcccC
Confidence 244555555555443
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.15 E-value=0.0011 Score=50.75 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 043490 328 GLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPMEPD-SVIWSVLLGSCRKHGETRLAELAAT 406 (589)
Q Consensus 328 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 406 (589)
|+++.|..+++.+.+.....|+...+-.+..+|.+.|++++|..++++.+..|+ ....-.+..+|.+.|++++|+.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 444444444444443311111222233344444455555555555444322222 1222233444455555555555444
No 177
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.13 E-value=0.25 Score=48.21 Aligned_cols=109 Identities=15% Similarity=0.194 Sum_probs=65.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 043490 316 TFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKH 395 (589)
Q Consensus 316 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 395 (589)
+.+..+.-|...|....|.++-. ++.+ |+...|...+.+|+..++|++-.++... +.++.-|..++.+|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 44445555556666666655543 3343 5666677777777777777766665443 22345666677777777
Q ss_pred CCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHH
Q 043490 396 GETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKE 441 (589)
Q Consensus 396 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 441 (589)
|+..+|..+..++ .+..-+.+|.++|+|.+|.+.--+
T Consensus 251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777666665551 124456667777777777665433
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.12 E-value=0.0019 Score=59.92 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=79.2
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHH
Q 043490 358 DLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKA 435 (589)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 435 (589)
+-+.+.+++++|+..|.+. .+.| |.+-|..-..+|.+.|.++.|++-.+..+.++|....+|..|..+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456789999999999988 6676 5888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 043490 436 RLIRKEMKGS 445 (589)
Q Consensus 436 ~~~~~~m~~~ 445 (589)
++.|++..+-
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 9999877653
No 179
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.12 E-value=0.086 Score=54.10 Aligned_cols=193 Identities=15% Similarity=0.144 Sum_probs=111.6
Q ss_pred HHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHH
Q 043490 176 AAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIAN 255 (589)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 255 (589)
..++-.|.+.+|-++|.++|...+|+++|..|.--. ...-+...|+.++-+.+.+.-.+- ..++.--.
T Consensus 640 ~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD----------~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePk 707 (1081)
T KOG1538|consen 640 DVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFD----------YAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPK 707 (1081)
T ss_pred HHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHH----------HHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcH
Confidence 345557889999999999999999999998875421 122334455555444443322111 01111112
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 043490 256 ALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNMNVQPDSATFVSLLSACSHAGLVQEGNK 335 (589)
Q Consensus 256 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~g~~~~a~~ 335 (589)
+-..++...|+.++|..+ ...+|-.+-+.++-+++ -..+..+...+..-+-+...+..|-+
T Consensus 708 aAAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rkl-d~~ere~l~~~a~ylk~l~~~gLAae 768 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARKL-DKAEREPLLLCATYLKKLDSPGLAAE 768 (1081)
T ss_pred HHHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhhc-chhhhhHHHHHHHHHhhccccchHHH
Confidence 345566677777776554 33455555566555555 11223344444444455667777888
Q ss_pred HHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHH-H----------HHHHHHHHHcCCHHHHHH
Q 043490 336 VFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMP-MEPDSVI-W----------SVLLGSCRKHGETRLAEL 403 (589)
Q Consensus 336 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~-~----------~~ll~~~~~~g~~~~a~~ 403 (589)
+|..|-. ...++++....+++++|+.+-++.| ..||+.. | ...-.||.+.|+-.+|.+
T Consensus 769 IF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~ 838 (1081)
T KOG1538|consen 769 IFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQ 838 (1081)
T ss_pred HHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHH
Confidence 8877621 2357788888888999888888873 3444321 1 112244555566666666
Q ss_pred HHHHHh
Q 043490 404 AATKLK 409 (589)
Q Consensus 404 ~~~~~~ 409 (589)
+++++.
T Consensus 839 vLeQLt 844 (1081)
T KOG1538|consen 839 VLEQLT 844 (1081)
T ss_pred HHHHhh
Confidence 666554
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.11 E-value=0.042 Score=47.41 Aligned_cols=133 Identities=12% Similarity=0.127 Sum_probs=93.2
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCc-cCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHH
Q 043490 309 NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVV-PQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP---DSV 383 (589)
Q Consensus 309 ~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~ 383 (589)
...|+...-..|..+....|+..+|...|++... |+- -|....-.+..+....+++.+|...+++. ...| ++.
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 4456666666777777788888888888877643 443 35555566666677778888888877776 1112 233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 384 IWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 384 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
+--.+...+...|+++.|+..|+.+..--| ++..-......+++.|+.+++..-+..+.+
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 344567888889999999999999988777 556666677788899988888766655543
No 181
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.09 E-value=0.0015 Score=48.31 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=49.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 389 LGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 389 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
-..|.+.++++.|.++++++++++|.++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567788899999999999999999888888899999999999999999998887644
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.08 E-value=0.02 Score=55.05 Aligned_cols=130 Identities=16% Similarity=0.234 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHH
Q 043490 284 SWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSA-CSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLL 360 (589)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 360 (589)
+|-.++...-+.+..+.|..+|.+. ...+ +...|...... +...++.+.|.++|+..++.+ ..+...|..-++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
Confidence 5666666666666677777777777 2222 23333333332 333577777999999988765 34566788888999
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 043490 361 GRVGRILEAEKLIREM-PMEPD----SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGD 415 (589)
Q Consensus 361 ~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 415 (589)
.+.|+.+.|..+|++. ..-|. ...|...+.-=.+.|+.+....+.+++.+.-|.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 9999999999999988 32333 3589999999999999999999999999887753
No 183
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.06 E-value=0.0041 Score=59.95 Aligned_cols=252 Identities=12% Similarity=0.060 Sum_probs=160.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhCcCcHHHHHHHHHHHH--Hh--CCC-CcHHHHHHHHHHH
Q 043490 191 FAKMKNEEEALFLFRQLQREGMAPDW----CTFSIVLKACAGLVTERHASAVHSLIA--KY--GFE-DDTVIANALIHAY 261 (589)
Q Consensus 191 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~--~~--g~~-~~~~~~~~li~~~ 261 (589)
++++|+....+.+|+..++.|. -|. ..|+.+-++|.-.+++++|.++|..=+ .. |-+ -.......|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 4899999999999999998873 233 456677788888899999999875422 11 100 1112222344444
Q ss_pred HhcCCHHHHHHHHhh-cC---C-----CChhHHHHHHHHHHHcCC--------------------HHHHHHHHHhC----
Q 043490 262 ARCGSISLSKQVFDK-MT---Y-----HDLVSWNSILKAYALHGQ--------------------AKEALQLFSNM---- 308 (589)
Q Consensus 262 ~~~g~~~~A~~~~~~-~~---~-----~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m---- 308 (589)
--.|.+++|...-.+ +. + ....++..+...|...|+ .+.|.++|.+-
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666543222 11 0 112344445555544432 22344444332
Q ss_pred ---CCC-CCHHHHHHHHHHHhccCcHHHHHHHHHH---hHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC----
Q 043490 309 ---NVQ-PDSATFVSLLSACSHAGLVQEGNKVFHS---MLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM---- 376 (589)
Q Consensus 309 ---~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m---- 376 (589)
|-. .-...|..|.+.|.-.|+++.|+..++. +.+.+|-+. .-..+..+..++.-.|+++.|.+.++..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 110 1123466666666677899999877653 223444433 2346778888899999999999998865
Q ss_pred ---C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh----cC--CCChhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 377 ---P-MEPDSVIWSVLLGSCRKHGETRLAELAATKLKQ----LE--PGDSLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 377 ---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
+ ......+.-+|..+|.-..+++.|+.++.+=+. ++ .....++.+|.++|...|..+.|..+.+.-.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 122356667888889888899999988877443 22 2356789999999999999999988776544
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.02 E-value=0.00092 Score=48.66 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=25.2
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 043490 363 VGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGD 415 (589)
Q Consensus 363 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 415 (589)
.|++++|+++|+++ ...| +...+..+..+|.+.|++++|...++++...+|++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 44444444444444 2223 34444445555555555555555555555555543
No 185
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.02 E-value=0.016 Score=58.18 Aligned_cols=121 Identities=13% Similarity=0.051 Sum_probs=95.9
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCccCcchHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHH
Q 043490 309 NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENH-GVVPQLDHYACMVDLLGRVGRILEAEKLIREM---PMEPDSVI 384 (589)
Q Consensus 309 ~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~ 384 (589)
+...+...+..+++.+....+++++..++....... ....-..+..++|..|...|..++++++++.= |+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 345577888889999999999999999888775431 11122345569999999999999999999765 89999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcC-CCChhHHHHHHHHhhhc
Q 043490 385 WSVLLGSCRKHGETRLAELAATKLKQLE-PGDSLGFVQMSNIYCLS 429 (589)
Q Consensus 385 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 429 (589)
++.|+..+.+.|++..|.+++..|...+ .+++.++..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988876544 56677777666666655
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.27 Score=45.03 Aligned_cols=229 Identities=12% Similarity=0.045 Sum_probs=142.8
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHhccCCCcee--HHHH----HHHhchhhHHHHHHHHHHhcCCCchhHHHHHHH
Q 043490 73 VVSWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFS--LASV----LISCDYLHGKLVHALALKFSLDAHVYVANALIN 146 (589)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t--~~~~----l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~ 146 (589)
...|+.-+.++++....++|..-+....+--.||-+- |..+ -.....-.-+.+|+.+.+.- ..-+++|..
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~l----gnpqesLdR 144 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYL----GNPQESLDR 144 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhc----CCcHHHHHH
Confidence 4467888888888888888877666554322222210 0000 00000223455666655332 123466666
Q ss_pred HHhc-CCHHHHHHHHhhCCC--CChhHH--------HHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 043490 147 MYSK-SCADEAWKVFENMEF--RNVISW--------NSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPD 215 (589)
Q Consensus 147 ~y~~-g~~~~A~~lf~~m~~--~~~~~~--------~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 215 (589)
.|.- .-+++-...|+.-.. ..+..| +.++..+ .-.|.+.-.+.++++.++...+.+
T Consensus 145 l~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~l-------------lG~kEy~iS~d~~~~vi~~~~e~~ 211 (366)
T KOG2796|consen 145 LHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCL-------------LGMKEYVLSVDAYHSVIKYYPEQE 211 (366)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH-------------hcchhhhhhHHHHHHHHHhCCccc
Confidence 6655 445555555554332 222223 4445554 667788888888888888776778
Q ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHH-----HHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHH
Q 043490 216 WCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIAN-----ALIHAYARCGSISLSKQVFDKMT---YHDLVSWNS 287 (589)
Q Consensus 216 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 287 (589)
+...+.+.+.-.+.||.+.|...++...+..-..|....+ .....|.-.+++..|...|++++ ..|++.-|.
T Consensus 212 p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~Nn 291 (366)
T KOG2796|consen 212 PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNN 291 (366)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhch
Confidence 8888888888888999999999998776653333333333 33445666778888888888777 345666676
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHH
Q 043490 288 ILKAYALHGQAKEALQLFSNM-NVQPDSATFV 318 (589)
Q Consensus 288 li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~ 318 (589)
-.-+..-.|+..+|++..+.| ...|...+-+
T Consensus 292 KALcllYlg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 292 KALCLLYLGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 666666778888999999888 6777655444
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.00 E-value=0.018 Score=55.40 Aligned_cols=125 Identities=14% Similarity=0.039 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-cCCHHHHHHHHhhcC---CCChhHHHHHHHHH
Q 043490 217 CTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYAR-CGSISLSKQVFDKMT---YHDLVSWNSILKAY 292 (589)
Q Consensus 217 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 292 (589)
.+|..+++.+-+.+..+.|+.+|..+.+.+ ..+..+|-....+-.. .++.+.|.++|+... ..+...|...+.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 467778888888888999999999988654 3334444444444333 466666999998876 45777888888888
Q ss_pred HHcCCHHHHHHHHHhC-CCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043490 293 ALHGQAKEALQLFSNM-NVQPDSA----TFVSLLSACSHAGLVQEGNKVFHSMLE 342 (589)
Q Consensus 293 ~~~g~~~~A~~~~~~m-~~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~ 342 (589)
...|+.+.|..+|++. ..-|... .|...+.-=.+.|+++...++.+.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888888 4344433 677777766777888888877777754
No 188
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.00 E-value=0.066 Score=51.67 Aligned_cols=143 Identities=13% Similarity=0.220 Sum_probs=66.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc-CCHHHHHHHHHhC------CCCCC--HHHHHHHHHHHhcc
Q 043490 257 LIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALH-GQAKEALQLFSNM------NVQPD--SATFVSLLSACSHA 327 (589)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m------~~~p~--~~t~~~ll~a~~~~ 327 (589)
.+..|...|++..|-+++.. +...|-.. |++++|++.|++. .-.|. ..++..+...+.+.
T Consensus 100 A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 34455566666655544443 34444444 5666666666665 01111 23455566666777
Q ss_pred CcHHHHHHHHHHhHHhcCCcc-----Ccc-hHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----C--HHHHHHHHHHHHH
Q 043490 328 GLVQEGNKVFHSMLENHGVVP-----QLD-HYACMVDLLGRVGRILEAEKLIREM-PMEP----D--SVIWSVLLGSCRK 394 (589)
Q Consensus 328 g~~~~a~~~~~~~~~~~~~~p-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~--~~~~~~ll~~~~~ 394 (589)
|++++|.++|+++.... ... +.. .+-..+-.+...|+...|.+.+++. ...| + ......|+.+|-.
T Consensus 169 ~~y~~A~~~~e~~~~~~-l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKC-LENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp T-HHHHHHHHHHHHHTC-CCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHh-hcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 77777777777664431 111 111 2223333455567777777777765 2222 1 3344555555543
Q ss_pred c--CCHHHHHHHHHHHhhc
Q 043490 395 H--GETRLAELAATKLKQL 411 (589)
Q Consensus 395 ~--g~~~~a~~~~~~~~~~ 411 (589)
. ..++.+..-|+.+.++
T Consensus 248 ~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp T-CCCHHHHCHHHTTSS--
T ss_pred CCHHHHHHHHHHHcccCcc
Confidence 2 2334444444433333
No 189
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.98 E-value=0.017 Score=49.03 Aligned_cols=91 Identities=9% Similarity=0.059 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccC
Q 043490 254 ANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAG 328 (589)
Q Consensus 254 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g 328 (589)
.-++...+...|++++|.++|+.+. ..+..-|-.|..++-..|++++|+..|... .+.|| +..+-.+..++...|
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 3345555667788888888887765 234556777777777788888888888887 55564 456777777777888
Q ss_pred cHHHHHHHHHHhHHhc
Q 043490 329 LVQEGNKVFHSMLENH 344 (589)
Q Consensus 329 ~~~~a~~~~~~~~~~~ 344 (589)
+.+.|++.|+..+...
T Consensus 118 ~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 118 NVCYAIKALKAVVRIC 133 (157)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 8888888887766543
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.93 E-value=0.014 Score=58.66 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=95.6
Q ss_pred cCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCC-CC-----hhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHH
Q 043490 133 SLDAHVYVANALINMYSK-SCADEAWKVFENMEF-RN-----VISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFR 205 (589)
Q Consensus 133 g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~-~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~ 205 (589)
+...+......+++.... .+++++..++-+... |+ ..|..+++..| .+.|..++++.+++
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~-------------l~~~~~~~~l~~L~ 127 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQC-------------LELGAEDELLELLK 127 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHH-------------HhcCCHHHHHHHHh
Confidence 344556666777888888 888888888877653 21 23556899999 99999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 043490 206 QLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARC 264 (589)
Q Consensus 206 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~ 264 (589)
.=...|+-||.+|++.+|..+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 128 n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 128 NRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 98999999999999999999999999999999999998887777777776655555555
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.93 E-value=0.0017 Score=47.36 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=48.4
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCC
Q 043490 351 DHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHG-ETRLAELAATKLKQLEP 413 (589)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 413 (589)
..|..+...+.+.|++++|+..|++. ...|+ ...|..+..++...| ++++|++.++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45666667777777777777777766 44554 778888888888888 68999999999888877
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.91 E-value=0.041 Score=57.54 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 043490 314 SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM 376 (589)
Q Consensus 314 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 376 (589)
...|..+.-.....|++++|...+++... +.|+...|..+...+...|+.++|.+.+++.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34454444444445666666666666542 3455556666666666666666666666655
No 193
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.86 E-value=0.0087 Score=53.24 Aligned_cols=86 Identities=17% Similarity=0.343 Sum_probs=52.7
Q ss_pred CCChhHHHHHHHHHHHc-----CCHHHHHHHHHhC---CCCCCHHHHHHHHHHHhcc----------------CcHHHHH
Q 043490 279 YHDLVSWNSILKAYALH-----GQAKEALQLFSNM---NVQPDSATFVSLLSACSHA----------------GLVQEGN 334 (589)
Q Consensus 279 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m---~~~p~~~t~~~ll~a~~~~----------------g~~~~a~ 334 (589)
.+|-.+|..++..|.+. |..+=....++.| |+.-|..+|+.||+.+=+. .+.+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 45555555555555533 4555444445555 7777777777777665431 2345567
Q ss_pred HHHHHhHHhcCCccCcchHHHHHHHHhhcCC
Q 043490 335 KVFHSMLENHGVVPQLDHYACMVDLLGRVGR 365 (589)
Q Consensus 335 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 365 (589)
+++++| +.+|+.||.+++..|++.+++.+.
T Consensus 124 ~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 777777 556777777777777777766554
No 194
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.035 Score=53.93 Aligned_cols=153 Identities=10% Similarity=0.023 Sum_probs=106.5
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHhHHhcCCccCcchH-------------
Q 043490 290 KAYALHGQAKEALQLFSNM-NVQPDSATFVSLLS--ACSHAGLVQEGNKVFHSMLENHGVVPQLDHY------------- 353 (589)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~------------- 353 (589)
.++...|++++|...--.. .+.++. .+..+++ ++--.++.+.|...|++.+ .+.|+-..-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHH
Confidence 3456677777777665555 444332 1222222 3334567788888887654 334442211
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhh
Q 043490 354 ACMVDLLGRVGRILEAEKLIREM-PME-----PDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYC 427 (589)
Q Consensus 354 ~~li~~~~~~g~~~~A~~~~~~m-~~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 427 (589)
..=.+...+.|++.+|.+.+.+. .+. |+...|.....+..+.|+.++|+.--+.+.+++|.-...|..-++++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 11123456789999999999887 444 456667777778889999999999999999999877888888899999
Q ss_pred hcCChHHHHHHHHHHhcCC
Q 043490 428 LSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 428 ~~g~~~~a~~~~~~m~~~~ 446 (589)
..++|++|.+-+++..+..
T Consensus 333 ~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999998876543
No 195
>PRK15331 chaperone protein SicA; Provisional
Probab=96.82 E-value=0.0076 Score=51.34 Aligned_cols=86 Identities=17% Similarity=0.013 Sum_probs=74.1
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHH
Q 043490 359 LLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKAR 436 (589)
Q Consensus 359 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 436 (589)
-+-..|++++|..+|+-+ -..| +..-|..|..+|...++++.|...+.....++++|+..+......|...|+.+.|+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 345688999999988877 2223 46678888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 043490 437 LIRKEMKG 444 (589)
Q Consensus 437 ~~~~~m~~ 444 (589)
..|....+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 99998776
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.80 E-value=0.027 Score=46.02 Aligned_cols=85 Identities=18% Similarity=-0.013 Sum_probs=51.7
Q ss_pred HHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC---ChhHHHHHHHHhhhc
Q 043490 358 DLLGRVGRILEAEKLIREM---PMEPD--SVIWSVLLGSCRKHGETRLAELAATKLKQLEPG---DSLGFVQMSNIYCLS 429 (589)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 429 (589)
.++-..|+.++|+.+|++. +.... ...+-.+.+.+...|++++|..++++.....|+ +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3445556666666666655 22221 334555666777777777777777777766665 444555566667777
Q ss_pred CChHHHHHHHHHH
Q 043490 430 GSFNKARLIRKEM 442 (589)
Q Consensus 430 g~~~~a~~~~~~m 442 (589)
|+.++|.+.+-..
T Consensus 89 gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 89 GRPKEALEWLLEA 101 (120)
T ss_pred CCHHHHHHHHHHH
Confidence 7777777766443
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.21 Score=45.74 Aligned_cols=102 Identities=13% Similarity=0.126 Sum_probs=61.5
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCC
Q 043490 170 SWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFED 249 (589)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 249 (589)
.|++++.-+.-...+++-+..+......+..+++|++=.. ....+++......+.+.-....+...++..-+.
T Consensus 138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~ 210 (366)
T KOG2796|consen 138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ 210 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc
Confidence 4555555553333333333333343444455555544221 334455566666667777777777777766667
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 043490 250 DTVIANALIHAYARCGSISLSKQVFDKMT 278 (589)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 278 (589)
++.....|+.+-.+.|+.+.|...|+...
T Consensus 211 ~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 211 EPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 77777888888888888888888887654
No 198
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.65 E-value=0.002 Score=39.28 Aligned_cols=33 Identities=21% Similarity=0.446 Sum_probs=30.5
Q ss_pred HHHHhhcCCCChhHHHHHHHHhhhcCChHHHHH
Q 043490 405 ATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARL 437 (589)
Q Consensus 405 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 437 (589)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
No 199
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.65 E-value=0.046 Score=48.15 Aligned_cols=81 Identities=9% Similarity=-0.118 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Q 043490 168 VISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAP--DWCTFSIVLKACAGLVTERHASAVHSLIAKY 245 (589)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 245 (589)
...|..+...+ ...|++++|+..|++.......| ...++..+...+...|+.++|...+....+.
T Consensus 35 a~~~~~~g~~~-------------~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 35 AFTYYRDGMSA-------------QSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34556666666 77788888888888876543222 1246666777777778888888877777765
Q ss_pred CCCCcHHHHHHHHHHHH
Q 043490 246 GFEDDTVIANALIHAYA 262 (589)
Q Consensus 246 g~~~~~~~~~~li~~~~ 262 (589)
. +.....+..+...|.
T Consensus 102 ~-~~~~~~~~~la~i~~ 117 (168)
T CHL00033 102 N-PFLPQALNNMAVICH 117 (168)
T ss_pred C-cCcHHHHHHHHHHHH
Confidence 3 333444555555555
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.63 E-value=0.064 Score=43.80 Aligned_cols=101 Identities=17% Similarity=0.124 Sum_probs=69.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCC---cHHHHHHHHHHHHhcCC
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPD--WCTFSIVLKACAGLVTERHASAVHSLIAKYGFED---DTVIANALIHAYARCGS 266 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~---~~~~~~~li~~~~~~g~ 266 (589)
...|+.++|+.+|++....|...+ ...+..+.+++...|+.++|..+++...... +. +..+...+..++...|+
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHHCCC
Confidence 778999999999999988886654 2456667777888899999999988887652 22 22333334446677788
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHH
Q 043490 267 ISLSKQVFDKMTYHDLVSWNSILKAYA 293 (589)
Q Consensus 267 ~~~A~~~~~~~~~~~~~~~~~li~~~~ 293 (589)
.++|.+.+-...-++...|.--|..|+
T Consensus 91 ~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 91 PKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888776655444445555454444
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.62 E-value=0.017 Score=54.68 Aligned_cols=88 Identities=15% Similarity=0.072 Sum_probs=46.5
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hhHHHHHHHHhhh
Q 043490 357 VDLLGRVGRILEAEKLIREM-PMEPD----SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGD---SLGFVQMSNIYCL 428 (589)
Q Consensus 357 i~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~ 428 (589)
+..+.+.|++++|...|+.+ ...|+ ...+--+..+|...|+++.|...|+.+.+..|++ +.++..++.+|..
T Consensus 150 ~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 150 IALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH
Confidence 33333445555555555444 11222 1234445556666666666666666666655543 3334444555666
Q ss_pred cCChHHHHHHHHHHhc
Q 043490 429 SGSFNKARLIRKEMKG 444 (589)
Q Consensus 429 ~g~~~~a~~~~~~m~~ 444 (589)
.|++++|.++++.+.+
T Consensus 230 ~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 230 KGDTAKAKAVYQQVIK 245 (263)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666554
No 202
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.61 E-value=0.86 Score=45.17 Aligned_cols=404 Identities=13% Similarity=0.106 Sum_probs=216.1
Q ss_pred HHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc---chHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 043490 26 QLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNV---VSWTALISGYAQHGNAEECFRLFCSLLQY 102 (589)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 102 (589)
++-+.+.. .| .|..+|-.||.-|...|..++-++++++|..|-+ .+|..-|++=....+++....+|.+.+..
T Consensus 30 rLRerIkd-NP---tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKD-NP---TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhc-Cc---hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 44444443 35 8899999999999999999999999999998754 47998898888888999999999988876
Q ss_pred -cCCCcee-HHHHHHHhc---hhhHH----HHHHHHHH-hcCCCc-hhHHHHHHHHHhc----CC------HHHHHHHHh
Q 043490 103 -FFPNEFS-LASVLISCD---YLHGK----LVHALALK-FSLDAH-VYVANALINMYSK----SC------ADEAWKVFE 161 (589)
Q Consensus 103 -~~p~~~t-~~~~l~a~~---~~~~~----~~~~~~~~-~g~~~~-~~~~~~li~~y~~----g~------~~~A~~lf~ 161 (589)
...|-.+ |..-++... ..+.+ +.+..++. .+++|- ...|+..+..... |. ++..++.+.
T Consensus 106 ~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 106 SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 4433332 222222222 11111 22222222 244442 3455555544322 33 345555666
Q ss_pred hCCC-C--Ch-hHHH------HHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCC----CCHHHHHHHHH-
Q 043490 162 NMEF-R--NV-ISWN------SMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQR--EGMA----PDWCTFSIVLK- 224 (589)
Q Consensus 162 ~m~~-~--~~-~~~~------~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~--~g~~----p~~~t~~~ll~- 224 (589)
++.. | |. ..|+ .=++.....+-+. ...--+..|.+.+++... .|.+ .+..|++-+-+
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvg------e~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~ 259 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVG------ETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART 259 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhc------ccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc
Confidence 6543 1 11 1121 1111110000000 011123345555555432 2322 12223332111
Q ss_pred ----------HHhCc-----Cc--HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhHH
Q 043490 225 ----------ACAGL-----VT--ERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT--YHDLVSW 285 (589)
Q Consensus 225 ----------a~~~~-----~~--~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 285 (589)
--... ++ .....-+|.+.... +.-...+|----.-+...++-+.|++..++.. .|....
T Consensus 260 s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~- 337 (660)
T COG5107 260 SDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTM- 337 (660)
T ss_pred ccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchhe-
Confidence 10000 00 11111122222221 12223333333333445567777777766543 222100
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-----------------CC---------------CCCHHHHHHHHHHHhccCcHHHH
Q 043490 286 NSILKAYALHGQAKEALQLFSNM-----------------NV---------------QPDSATFVSLLSACSHAGLVQEG 333 (589)
Q Consensus 286 ~~li~~~~~~g~~~~A~~~~~~m-----------------~~---------------~p~~~t~~~ll~a~~~~g~~~~a 333 (589)
-+-..|--..+.++....|+.. +. .--...|...+++-.+...++.|
T Consensus 338 -~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aa 416 (660)
T COG5107 338 -FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAA 416 (660)
T ss_pred -eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHH
Confidence 0111111112222211111111 11 11123456677777778889999
Q ss_pred HHHHHHhHHhcC-CccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhh
Q 043490 334 NKVFHSMLENHG-VVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPDSVI-WSVLLGSCRKHGETRLAELAATKLKQ 410 (589)
Q Consensus 334 ~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~ 410 (589)
+.+|-+..+. + +.+++.++++++.-++ .|+..-|..+|+-- ..-||... -.-.+.-+..-++-+.|..+|+...+
T Consensus 417 R~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 417 RKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 9999998554 5 6778899999998765 57778889998765 33455433 34566667778888999999996554
Q ss_pred cCC--CChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 411 LEP--GDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 411 ~~p--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
.-. .-...|..++.--+.-|+...+..+=++|.+
T Consensus 495 r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 495 RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 221 1245788888888888888888777776654
No 203
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.60 E-value=0.022 Score=44.92 Aligned_cols=75 Identities=15% Similarity=0.409 Sum_probs=44.6
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCC-ccCcchHHHHHHHHhhcC--------CHHHHHHHHHhC---CCCCCHHHHH
Q 043490 319 SLLSACSHAGLVQEGNKVFHSMLENHGV-VPQLDHYACMVDLLGRVG--------RILEAEKLIREM---PMEPDSVIWS 386 (589)
Q Consensus 319 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m---~~~p~~~~~~ 386 (589)
..|..|...+++.....+|+.+ ++.|+ .|++.+|+.++.+..+.. ++-+.+.+++.| +++|+..+|+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqsl-kRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSL-KRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3444555556666666666666 34466 666666666666655432 233455556665 6677777777
Q ss_pred HHHHHHHH
Q 043490 387 VLLGSCRK 394 (589)
Q Consensus 387 ~ll~~~~~ 394 (589)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77666543
No 204
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.58 E-value=0.025 Score=46.65 Aligned_cols=74 Identities=11% Similarity=0.160 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CC-----------------CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 043490 284 SWNSILKAYALHGQAKEALQLFSNM-NV-----------------QPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHG 345 (589)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m-~~-----------------~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 345 (589)
++.++|.++++.|+.+....+.+.. |+ .|+..+..+++.+++..|++..|.++.+...+.++
T Consensus 4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 4444555555555555555555444 33 34445555555555555555555555555544444
Q ss_pred CccCcchHHHHH
Q 043490 346 VVPQLDHYACMV 357 (589)
Q Consensus 346 ~~p~~~~~~~li 357 (589)
++-+..+|..|+
T Consensus 84 I~i~~~~W~~Ll 95 (126)
T PF12921_consen 84 IPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHH
Confidence 433333443333
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.51 E-value=0.33 Score=47.88 Aligned_cols=34 Identities=29% Similarity=0.181 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 043490 381 DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPG 414 (589)
Q Consensus 381 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 414 (589)
|--.+.+++.++.-.|+.+.|.+..+++.++.|+
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 3444466777777777888888888877777664
No 206
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.49 E-value=0.2 Score=46.99 Aligned_cols=176 Identities=11% Similarity=0.038 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh-hH---HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH--HHHHHHH
Q 043490 251 TVIANALIHAYARCGSISLSKQVFDKMTY--HDL-VS---WNSILKAYALHGQAKEALQLFSNM-NVQPDS--ATFVSLL 321 (589)
Q Consensus 251 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~--~t~~~ll 321 (589)
....-.....+.+.|++++|.+.|+.+.. |+. .. .-.++.+|.+.+++++|...|++. ...|+. ..+...+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 33333445556778899999999888863 222 22 234566778888999999988888 555543 2333333
Q ss_pred HHHhc--c---------------Cc---HHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 043490 322 SACSH--A---------------GL---VQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPMEPD 381 (589)
Q Consensus 322 ~a~~~--~---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 381 (589)
.+.+. . .+ ..+|.+.|+.+++++ |+ ..-..+|...+..+...--
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHHH
Confidence 33321 1 11 223445555554442 32 2223344333333210000
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 382 SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGD---SLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 382 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
..- -.+..-|.+.|.+.-|..-++.+++.-|+. ..+...+.++|.+.|..++|..+...+.
T Consensus 176 ~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 KYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 111 134556888899999999999999877654 4456688899999999999999887664
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.48 E-value=0.013 Score=43.28 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=49.6
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHH
Q 043490 358 DLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGF 419 (589)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 419 (589)
..|.+.+++++|.+.++.+ ...|+ ...|......+...|+++.|...+++..+..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4677888888888888887 55554 67777788888999999999999999999988765543
No 208
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=1.5 Score=46.39 Aligned_cols=117 Identities=13% Similarity=0.161 Sum_probs=87.8
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 043490 309 NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVL 388 (589)
Q Consensus 309 ~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 388 (589)
+..-...|.+-.+.-+...|...+|.++-.+.. -||...|-.=+.+++..+++++-+++-+.+. .+.-|.-+
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 333444566666777777888888888866552 5788888888999999999999888887763 24556678
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHH
Q 043490 389 LGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKE 441 (589)
Q Consensus 389 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 441 (589)
..+|.+.|+.++|.+.+-+...+ .-...+|.+.|++.+|.++--+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 88999999999998887665332 1577889999999998876544
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.48 E-value=0.36 Score=41.91 Aligned_cols=124 Identities=15% Similarity=0.101 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHH
Q 043490 212 MAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTY-----HDLVSWN 286 (589)
Q Consensus 212 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 286 (589)
+.|+...-..+..+....|+..+|...|.+...--+..|..+.-.+.++....++...|...++.+-+ +++.+--
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 34666656666677777777777777777766555566666666777777777777777776666542 1222333
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHH
Q 043490 287 SILKAYALHGQAKEALQLFSNM-NVQPDSATFVSLLSACSHAGLVQEGNK 335 (589)
Q Consensus 287 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~~g~~~~a~~ 335 (589)
.+...|...|.+.+|..-|+.. ..-|+...-.....-+.+.|+.+++..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 4455666666666666666666 444544333223333344555544443
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.46 E-value=0.014 Score=58.14 Aligned_cols=63 Identities=13% Similarity=-0.084 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChh---HHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 382 SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSL---GFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 382 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
...|+.+..+|...|++++|+..+++.++++|++.. +|..+..+|.+.|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555442 255555555555555555555555544
No 211
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.39 E-value=0.0078 Score=39.26 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 043490 383 VIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSN 424 (589)
Q Consensus 383 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 424 (589)
.+|..+..+|...|++++|+++++++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788999999999999999999999999999988877753
No 212
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.31 E-value=0.64 Score=51.63 Aligned_cols=142 Identities=21% Similarity=0.222 Sum_probs=94.5
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 043490 183 LEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYA 262 (589)
Q Consensus 183 ~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~ 262 (589)
-+++.+++..+.|.+.+|+.++ +|+...+.-+..+|+. .+.+.. .|+--.-+|.
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL~~~~------~~~~Aal~Ye 963 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HLREEL------MSDEAALMYE 963 (1265)
T ss_pred ccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HHHHhc------cccHHHHHHH
Confidence 4566666667777777776664 5777777666655542 222221 1233345788
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHh
Q 043490 263 RCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNMNVQPDSA--TFVSLLSACSHAGLVQEGNKVFHSM 340 (589)
Q Consensus 263 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~ 340 (589)
++|+.++|.+. |...|++.+|+.+-.++...-|.. +-..|..-+...+++-+|-++..+.
T Consensus 964 ~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 964 RCGKLEKALKA------------------YKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HhccHHHHHHH------------------HHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 99999998655 455789999999999883333333 2356777788888888888887655
Q ss_pred HHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCC
Q 043490 341 LENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMP 377 (589)
Q Consensus 341 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 377 (589)
.. . +.-.+..|+++..+++|..+....+
T Consensus 1026 ~s----d-----~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1026 LS----D-----PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred hc----C-----HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 33 2 3355677888889999998877663
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.30 E-value=0.089 Score=49.81 Aligned_cols=100 Identities=12% Similarity=0.112 Sum_probs=62.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHH
Q 043490 317 FVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM----PMEPD-SVIWSVLLG 390 (589)
Q Consensus 317 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll~ 390 (589)
|...+......|++++|...|+.+++.+.-.+ ....+-.+...|...|++++|...|+.+ |..|. ...+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444333445667777777766665432111 0124555666677777777777777666 22221 445555666
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCCh
Q 043490 391 SCRKHGETRLAELAATKLKQLEPGDS 416 (589)
Q Consensus 391 ~~~~~g~~~~a~~~~~~~~~~~p~~~ 416 (589)
.+...|+.+.|...++++++..|++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 77788899999999999888888654
No 214
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.18 E-value=0.025 Score=48.48 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHh-----cCCCccC
Q 043490 383 VIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMK-----GSRVRKY 450 (589)
Q Consensus 383 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~ 450 (589)
.....++..+...|+++.|....+++...+|.+...|..++.+|...|+..+|.++|+++. +.|+.|.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 4556677888899999999999999999999999999999999999999999999999875 3466543
No 215
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.14 E-value=0.29 Score=45.85 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=27.0
Q ss_pred HHHHHHcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 043490 289 LKAYALHGQAKEALQLFSNM-----NVQPDSATFVSLLSACSHAGLVQEGNKVFHS 339 (589)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m-----~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 339 (589)
..-|.+.|.+..|+.-|+.+ +.+........+..++...|..++|..+...
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 33455566666666555555 2222334455555566666666665555443
No 216
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.49 Score=46.36 Aligned_cols=84 Identities=21% Similarity=0.170 Sum_probs=43.9
Q ss_pred ccCcHHHHHHHHHHhHHhcCCcc-----CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH--HHHHHHcCC
Q 043490 326 HAGLVQEGNKVFHSMLENHGVVP-----QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPDSVIWSVL--LGSCRKHGE 397 (589)
Q Consensus 326 ~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l--l~~~~~~g~ 397 (589)
+.|.+..|.+.+.+.+ ++.| +...|........+.|++++|+.--+.. .+.| ..++..+ ..++...++
T Consensus 261 k~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLALEK 336 (486)
T ss_pred hccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHHH
Confidence 3455555555555443 3333 3334555555556667777776665554 3222 2222222 233444566
Q ss_pred HHHHHHHHHHHhhcCC
Q 043490 398 TRLAELAATKLKQLEP 413 (589)
Q Consensus 398 ~~~a~~~~~~~~~~~p 413 (589)
++.|.+-+++..+...
T Consensus 337 ~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 7777777777766554
No 217
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.11 E-value=2.7 Score=45.55 Aligned_cols=185 Identities=17% Similarity=0.171 Sum_probs=113.0
Q ss_pred HHHHHHHHHH--ccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCcchHHHHHHH
Q 043490 7 IYATLFHACA--LHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--RNVVSWTALISG 82 (589)
Q Consensus 7 ~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~ 82 (589)
.|..++.++. +.|..++|..+++......+ .|..+...+...|-..|+.++|..++++..+ |+......+..+
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~---~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFma 119 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKG---TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMA 119 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC---CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHH
Confidence 3455555554 77889999977776654333 5888999999999999999999999999876 565556667778
Q ss_pred HHhCCChhH----HHHHHHHHHhccCCCceeHHHHHHHhc--------------hhhHHHHHHHHHHhc-CCCchhHHHH
Q 043490 83 YAQHGNAEE----CFRLFCSLLQYFFPNEFSLASVLISCD--------------YLHGKLVHALALKFS-LDAHVYVANA 143 (589)
Q Consensus 83 ~~~~g~~~~----A~~~~~~m~~~~~p~~~t~~~~l~a~~--------------~~~~~~~~~~~~~~g-~~~~~~~~~~ 143 (589)
|++.+++.+ |+++|+ ...-+.+.|-+++.... +..+....+.+++.+ -..+..-.--
T Consensus 120 yvR~~~yk~qQkaa~~LyK----~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L 195 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYK----NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIIL 195 (932)
T ss_pred HHHHHHHHHHHHHHHHHHH----hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHH
Confidence 888887754 555554 33445566666655443 233444444444333 1111111111
Q ss_pred HHHHHhc-CCHHHHHHHHhh-----CCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043490 144 LINMYSK-SCADEAWKVFEN-----MEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREG 211 (589)
Q Consensus 144 li~~y~~-g~~~~A~~lf~~-----m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g 211 (589)
-...... |..++|..++.. ...-+...-|--+.-+ ...+++.+-.++-.++...|
T Consensus 196 yl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dll-------------k~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 196 YLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLL-------------KLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHH-------------HHhcChHHHHHHHHHHHHhC
Confidence 2223344 888888888732 2223334444445555 55566666666666665554
No 218
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=2.7 Score=44.61 Aligned_cols=102 Identities=21% Similarity=0.219 Sum_probs=59.7
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 043490 259 HAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNMNVQPDSATFVSLLSACSHAGLVQEGNKVFH 338 (589)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 338 (589)
.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-+.+ + .+.-|.-...+|.+.|+.++|.+++.
T Consensus 692 ~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAksk--k-sPIGy~PFVe~c~~~~n~~EA~KYip 768 (829)
T KOG2280|consen 692 TTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSK--K-SPIGYLPFVEACLKQGNKDEAKKYIP 768 (829)
T ss_pred HHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhcc--C-CCCCchhHHHHHHhcccHHHHhhhhh
Confidence 33445566666666666666666666666666666666666665555554 1 13344445666666666666666664
Q ss_pred HhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHH
Q 043490 339 SMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLI 373 (589)
Q Consensus 339 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 373 (589)
... |. .-.+.+|.+.|++.+|.++-
T Consensus 769 rv~---~l-------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 769 RVG---GL-------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ccC---Ch-------HHHHHHHHHhccHHHHHHHH
Confidence 331 11 13556666666666666554
No 219
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.82 E-value=0.29 Score=39.85 Aligned_cols=85 Identities=18% Similarity=0.130 Sum_probs=58.9
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHH
Q 043490 362 RVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKE 441 (589)
Q Consensus 362 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 441 (589)
.+|++.....-+-.++ .+.......+.+....|+-+.-.++...+.+.+..++....-++++|.+.|+..++..++.+
T Consensus 68 ~C~NlKrVi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp G-S-THHHHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcchHHHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3555555555555543 24555667788899999999999999998876656888999999999999999999999999
Q ss_pred HhcCCCc
Q 043490 442 MKGSRVR 448 (589)
Q Consensus 442 m~~~~~~ 448 (589)
.-++|++
T Consensus 146 ACekG~k 152 (161)
T PF09205_consen 146 ACEKGLK 152 (161)
T ss_dssp HHHTT-H
T ss_pred HHHhchH
Confidence 9999974
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.79 E-value=0.012 Score=44.08 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc----CCC---ChhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 382 SVIWSVLLGSCRKHGETRLAELAATKLKQL----EPG---DSLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 382 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
..+++.+...|...|++++|+..+++++++ ++. -..++..++.+|...|++++|.+.+++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456777888888888888888888887653 221 24567788889999999999999888754
No 221
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.66 E-value=0.22 Score=48.56 Aligned_cols=125 Identities=14% Similarity=0.064 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHH----hCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCC--h
Q 043490 217 CTFSIVLKACAGLVTERHASAVHSLIAK----YGF-EDDTVIANALIHAYARCGSISLSKQVFDKMT-------YHD--L 282 (589)
Q Consensus 217 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~--~ 282 (589)
..|..+-+.|.-.|+++.|...|+.-+. .|- ......+..|.+.|.-.|+++.|.+.|.... .+. .
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4566666777778889999888875433 231 1234567788888889999999988887643 232 3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043490 283 VSWNSILKAYALHGQAKEALQLFSNM--------NVQPDSATFVSLLSACSHAGLVQEGNKVFHSML 341 (589)
Q Consensus 283 ~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 341 (589)
.+..+|...|.-..++++|+.++.+- ...-...++-+|..++...|..++|..+.+...
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 46667888888888899999888765 222345678889999999999999887765543
No 222
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.59 E-value=1.1 Score=40.72 Aligned_cols=163 Identities=15% Similarity=0.145 Sum_probs=82.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH--HHHHHHHHHHhcc
Q 043490 257 LIHAYARCGSISLSKQVFDKMTY--HD----LVSWNSILKAYALHGQAKEALQLFSNM-NVQPDS--ATFVSLLSACSHA 327 (589)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~--~t~~~ll~a~~~~ 327 (589)
....+...|++++|.+.|+.+.. |+ ..+.-.++.++-+.|++++|...|++. ..-|+. ..+...+.+.+.-
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 34445566777777777776652 21 124445566666777777777777776 333322 1222222222111
Q ss_pred Cc-------------HHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 043490 328 GL-------------VQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRK 394 (589)
Q Consensus 328 g~-------------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 394 (589)
.. ..+|...|+.+ +.-|=......+|...+..+.-.--..- -.+..-|.+
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~l----------------i~~yP~S~y~~~A~~~l~~l~~~la~~e-~~ia~~Y~~ 153 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEEL----------------IKRYPNSEYAEEAKKRLAELRNRLAEHE-LYIARFYYK 153 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHH----------------HHH-TTSTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHC
T ss_pred HhCccchhcccChHHHHHHHHHHHHH----------------HHHCcCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 11 11222333332 2223333333344333333210000001 124466888
Q ss_pred cCCHHHHHHHHHHHhhcCCCChh---HHHHHHHHhhhcCChHHHH
Q 043490 395 HGETRLAELAATKLKQLEPGDSL---GFVQMSNIYCLSGSFNKAR 436 (589)
Q Consensus 395 ~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~ 436 (589)
.|.+..|..-++.+++.-|+... +...++.+|.+.|..+.+.
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999999999998886543 3567888999999888544
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.56 E-value=0.021 Score=42.74 Aligned_cols=29 Identities=14% Similarity=-0.090 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 043490 382 SVIWSVLLGSCRKHGETRLAELAATKLKQ 410 (589)
Q Consensus 382 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 410 (589)
..++..+...+...|++++|++.+++..+
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666777777777777777777777654
No 224
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.51 E-value=0.092 Score=43.34 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 043490 313 DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPDSVIWSVLLGS 391 (589)
Q Consensus 313 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~ 391 (589)
|..++..++.++++.|+++....+.+.. +|+.++...- .+. +..- +..|+..+..+++.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~---------~~~-------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKK---------EGD-------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCccc---------cCc-------cCCCCCCCCCHHHHHHHHHH
Confidence 5678888999999999999988887643 4665543210 000 1111 567788888888888
Q ss_pred HHHcCCHHHHHHHHHHHhhcC--CCChhHHHHHHHHh
Q 043490 392 CRKHGETRLAELAATKLKQLE--PGDSLGFVQMSNIY 426 (589)
Q Consensus 392 ~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~ 426 (589)
|..+|++..|.++.+...+.- |-+...|..|++-.
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 888888888888777776543 23355666666543
No 225
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.17 Score=47.53 Aligned_cols=108 Identities=14% Similarity=0.069 Sum_probs=84.7
Q ss_pred CChhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcC---ChHHHHHHHhcCCC--C-CcchH
Q 043490 3 HSTQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFG---YLDDARHLFDEMPK--R-NVVSW 76 (589)
Q Consensus 3 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~f~~m~~--~-~~~~~ 76 (589)
-|...|-.|-+.+...|++..|...|....+..+ +++..+..+...+.... ...++..+|+++.. | |+.+.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g---~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAG---DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 3667889999999999999999999999998866 78887777777655443 35678999998874 3 56677
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHH
Q 043490 77 TALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVL 114 (589)
Q Consensus 77 ~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l 114 (589)
.-|...+...|++.+|...++.|.+...|| ..+..++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~-~~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPAD-DPRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCC-CchHHHH
Confidence 778888999999999999999999874333 3343333
No 226
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.20 E-value=0.075 Score=45.50 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043490 254 ANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM 308 (589)
Q Consensus 254 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 308 (589)
...++..+...|+++.|....+.+. +-|...|..+|.+|...|+..+|++.|+++
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3445555555666666666655554 223445556666666666666666555554
No 227
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.18 E-value=0.22 Score=46.04 Aligned_cols=105 Identities=19% Similarity=0.183 Sum_probs=80.6
Q ss_pred HHHHHHhhCC--CCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCc---
Q 043490 155 EAWKVFENME--FRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGL--- 229 (589)
Q Consensus 155 ~A~~lf~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--- 229 (589)
..++.|...+ ++|-.+|-+++..+.. .-..+.+..+-....++.|.+-|+.-|..+|..||+.+-+.
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E--------~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi 123 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKE--------KSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI 123 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHH--------hhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc
Confidence 4456777776 6888889888887711 11134466777777889999999999999999999887543
Q ss_pred -------------CcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH
Q 043490 230 -------------VTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSI 267 (589)
Q Consensus 230 -------------~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 267 (589)
..-+-+..++++|...|+.||..+-..|++++++.+-.
T Consensus 124 P~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 124 PQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred cHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 23455788899999999999999999999998887653
No 228
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.04 E-value=2.6 Score=41.76 Aligned_cols=111 Identities=17% Similarity=0.106 Sum_probs=66.1
Q ss_pred HHHHHHhc-CCHHHHHHHHhhCCCC-Ch-hHHHHHH---HHHHcCCcHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCC
Q 043490 143 ALINMYSK-SCADEAWKVFENMEFR-NV-ISWNSMI---AAFRACKLEAQAIELFAK---MKNEEEALFLFRQLQREGMA 213 (589)
Q Consensus 143 ~li~~y~~-g~~~~A~~lf~~m~~~-~~-~~~~~li---~~~~~~g~~~~a~~~~~~---~g~~~~A~~~~~~m~~~g~~ 213 (589)
.++-.|-. .+++...++.+.++.. +. +.-+..+ .+++ +.+ .|+.++|++++..+....-.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafA-----------LnRrn~~gdre~Al~il~~~l~~~~~ 214 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFA-----------LNRRNKPGDREKALQILLPVLESDEN 214 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHH-----------HhhcccCCCHHHHHHHHHHHHhccCC
Confidence 33445777 8999999999998753 21 1111111 1110 144 79999999999997666677
Q ss_pred CCHHHHHHHHHHHhC---------cCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 043490 214 PDWCTFSIVLKACAG---------LVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGS 266 (589)
Q Consensus 214 p~~~t~~~ll~a~~~---------~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~ 266 (589)
+++.||..+...|-. ...++.|...|.+.-+. .||....-.++..+.-.|.
T Consensus 215 ~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 215 PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGH 274 (374)
T ss_pred CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCC
Confidence 888899888776631 22355666666544433 3444444344444444443
No 229
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.03 E-value=2.7 Score=38.24 Aligned_cols=212 Identities=18% Similarity=0.133 Sum_probs=140.6
Q ss_pred cHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHHcCCHHHHHHH
Q 043490 231 TERHASAVHSLIAKYGFE-DDTVIANALIHAYARCGSISLSKQVFDKMT-----YHDLVSWNSILKAYALHGQAKEALQL 304 (589)
Q Consensus 231 ~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 304 (589)
....+...+......... ............+...+.+..+...+.... ......+......+...+...++.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444443311 135666677777778888887777777653 23445666666777777888888888
Q ss_pred HHhC-CCCCCH-HHHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCcc----CcchHHHHHHHHhhcCCHHHHHHHHHhC-
Q 043490 305 FSNM-NVQPDS-ATFVSLLS-ACSHAGLVQEGNKVFHSMLENHGVVP----QLDHYACMVDLLGRVGRILEAEKLIREM- 376 (589)
Q Consensus 305 ~~~m-~~~p~~-~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m- 376 (589)
+... ...++. ........ ++...|+++.+...+..... ..| ....+......+...++.++|...+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8887 444433 22222223 67788888888888887743 222 2223334444466778888888888877
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 377 PMEPD--SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 377 ~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
...|+ ...+..+...+...++.+.+...+.......|.....+..+...+...|.++++...+......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33333 6777788888888888999999999998888865566666777666777788888888777654
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.21 Score=48.84 Aligned_cols=64 Identities=16% Similarity=0.071 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 382 SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 382 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
..++..|..+|.+.+++..|++...++++++|+|.-....-..+|...|.++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3456777888899999999999999999999999999999999999999999999999999864
No 231
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.00 E-value=2.2 Score=38.97 Aligned_cols=84 Identities=13% Similarity=0.092 Sum_probs=48.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc----CCCChhHHHHHH
Q 043490 356 MVDLLGRVGRILEAEKLIREMP-------MEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQL----EPGDSLGFVQMS 423 (589)
Q Consensus 356 li~~~~~~g~~~~A~~~~~~m~-------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~ 423 (589)
.-..|.+..++++|-..|.+-+ --|+ -..+-+.|-.+....++..|++.++.--++ +|.+..+...|+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 3445666666666655554431 1122 123344444555556777888877775443 356667777777
Q ss_pred HHhhhcCChHHHHHHHH
Q 043490 424 NIYCLSGSFNKARLIRK 440 (589)
Q Consensus 424 ~~~~~~g~~~~a~~~~~ 440 (589)
.+|- .|+.+++.++..
T Consensus 236 ~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 236 TAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHhc-cCCHHHHHHHHc
Confidence 7774 567776666543
No 232
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.85 E-value=0.89 Score=41.38 Aligned_cols=141 Identities=17% Similarity=0.152 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHH
Q 043490 285 WNSILKAYALHGQAKEALQLFSNM-NVQPD----SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDL 359 (589)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 359 (589)
+-.....+.+.|++.+|.+.|+++ ..-|+ ......++.++.+.|++++|...++..++.+.-.|.. .+...+.+
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g 86 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHH
Confidence 333445556667777777777776 22221 2344555666666777777777777666554333322 11111111
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChh-----------------HHHHH
Q 043490 360 LGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSL-----------------GFVQM 422 (589)
Q Consensus 360 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l 422 (589)
.+......... .. ....+....|...|+.+++.-|++.. .-..+
T Consensus 87 ~~~~~~~~~~~------~~-------------~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 87 LSYYKQIPGIL------RS-------------DRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp HHHHHHHHHHH-------T-------------T---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCccch------hc-------------ccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111110000 00 11112234555555555555554322 12356
Q ss_pred HHHhhhcCChHHHHHHHHHHhcC
Q 043490 423 SNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 423 ~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
+..|.+.|.+..|..-++.+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH
Confidence 78899999999999999998764
No 233
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.82 E-value=0.26 Score=40.02 Aligned_cols=89 Identities=20% Similarity=0.177 Sum_probs=65.4
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh----hHHHHHHHHhhhcCCh
Q 043490 359 LLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDS----LGFVQMSNIYCLSGSF 432 (589)
Q Consensus 359 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~ 432 (589)
+++..|+++.|++.|.+. .+-| ....||.-..+++-.|+.++|..-+++.+++.-+.. .+|+.-...|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 466778888888888776 3344 477788888888888888888888888887653222 2366667778888888
Q ss_pred HHHHHHHHHHhcCCC
Q 043490 433 NKARLIRKEMKGSRV 447 (589)
Q Consensus 433 ~~a~~~~~~m~~~~~ 447 (589)
+.|+.=|+..-+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888887776664
No 234
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.72 E-value=7.7 Score=43.65 Aligned_cols=124 Identities=15% Similarity=0.106 Sum_probs=55.2
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH----hccCcHHHHHHHHHHh
Q 043490 265 GSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNMNVQPDSATFVSLLSAC----SHAGLVQEGNKVFHSM 340 (589)
Q Consensus 265 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~----~~~g~~~~a~~~~~~~ 340 (589)
++++.|+.-+..+. ...|.-.+.---++|.+.+|+.++ .|+...+..+..+| ...+.+++|--.|+..
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly-----~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~ 965 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY-----KPDSEKQKVIYEAYADHLREELMSDEAALMYERC 965 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee-----ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 44555555554443 222333333334455555555544 35554444333333 3344455554444332
Q ss_pred HHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHH
Q 043490 341 LENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVI--WSVLLGSCRKHGETRLAELAAT 406 (589)
Q Consensus 341 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~ 406 (589)
-+ ..--+.+|..+|++.+|+.+..++....|... -..|.+-+...+++-+|-++..
T Consensus 966 Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~ 1023 (1265)
T KOG1920|consen 966 GK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILL 1023 (1265)
T ss_pred cc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHH
Confidence 10 11234555556666666666655532223221 1344555555555544444433
No 235
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.7 Score=45.36 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=75.5
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhc
Q 043490 352 HYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLS 429 (589)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 429 (589)
++..|.-.|.+.+++.+|++.-++. ...| |+...-.=..+|...|+++.|+..|+++++++|.|-.+-..|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 5667778888999999998888776 3344 5666666678999999999999999999999999988888888887777
Q ss_pred CChHHH-HHHHHHHhc
Q 043490 430 GSFNKA-RLIRKEMKG 444 (589)
Q Consensus 430 g~~~~a-~~~~~~m~~ 444 (589)
....+. .++|..|-.
T Consensus 339 ~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 666555 778888864
No 236
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.57 E-value=1.7 Score=41.99 Aligned_cols=121 Identities=15% Similarity=0.102 Sum_probs=61.4
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCC--cc--CcchHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHH--
Q 043490 320 LLSACSHAGLVQEGNKVFHSMLENHGV--VP--QLDHYACMVDLLGRVGRILEAEKLIREM-------PMEPDSVIWS-- 386 (589)
Q Consensus 320 ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~-- 386 (589)
+..+....+.++++.+.|+...+-..- .| ...+|..|...|++..++++|.-+..+. +++--..-|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 444555555666666666655332111 11 2335666666777766666665544433 2111111122
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHHHhhcC--CCChh----HHHHHHHHhhhcCChHHHHHHHH
Q 043490 387 ---VLLGSCRKHGETRLAELAATKLKQLE--PGDSL----GFVQMSNIYCLSGSFNKARLIRK 440 (589)
Q Consensus 387 ---~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~----~~~~l~~~~~~~g~~~~a~~~~~ 440 (589)
-+.-+++..|....|.+.-++..++- ..|.. ....+.++|-..|+.+.|..-++
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 23345666666666666666654421 22322 23456666777777666655554
No 237
>PRK11906 transcriptional regulator; Provisional
Probab=94.56 E-value=2.2 Score=43.13 Aligned_cols=154 Identities=12% Similarity=0.122 Sum_probs=96.2
Q ss_pred hHH--HHHHHHHHHc-----CCHHHHHHHHHhC----CCCCCHH-HHHHHHHHHhc---------cCcHHHHHHHHHHhH
Q 043490 283 VSW--NSILKAYALH-----GQAKEALQLFSNM----NVQPDSA-TFVSLLSACSH---------AGLVQEGNKVFHSML 341 (589)
Q Consensus 283 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m----~~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~~~ 341 (589)
..| ..++.|.... ...+.|+.+|.+. .+.|+.. .|..+..++.. .....+|.+.-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554441 1345677788877 4556543 33333322211 223445555555554
Q ss_pred HhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhH
Q 043490 342 ENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLG 418 (589)
Q Consensus 342 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 418 (589)
+ +.| |......+..++.-.|+++.|..+|++. .+.|| ..+|......+.-.|+.++|.+.+++..+++|.-..+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3 334 5555666666667778899999999888 66777 6677777777778899999999999999999854433
Q ss_pred --HHHHHHHhhhcCChHHHHHHHH
Q 043490 419 --FVQMSNIYCLSGSFNKARLIRK 440 (589)
Q Consensus 419 --~~~l~~~~~~~g~~~~a~~~~~ 440 (589)
....++.|...+ .++|++++-
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHHh
Confidence 334445666554 566666654
No 238
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.39 E-value=0.59 Score=47.13 Aligned_cols=154 Identities=12% Similarity=0.055 Sum_probs=92.1
Q ss_pred HHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHH
Q 043490 293 ALHGQAKEALQLFSNM-NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEK 371 (589)
Q Consensus 293 ~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 371 (589)
-+..+.+.-++.-++. .+.||..+.-.++. --.+....++.+++++.++... ..+..- ......|. ..+
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLA-EEeA~Ti~Eae~l~rqAvkAgE-----~~lg~s-~~~~~~g~---~~e 248 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLA-EEEASTIVEAEELLRQAVKAGE-----ASLGKS-QFLQHHGH---FWE 248 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhcc-cccccCHHHHHHHHHHHHHHHH-----Hhhchh-hhhhcccc---hhh
Confidence 3445555555555555 67787655444432 2234567888888887754310 000000 00000111 111
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC--ChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCcc
Q 043490 372 LIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPG--DSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVRK 449 (589)
Q Consensus 372 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 449 (589)
.+..-..+|-..+-..|..++.+.|+.++|++.++.+.+..|. +..+...|++++...+.+.++..++.+-.+-..++
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 1111122233444466777888999999999999999887764 45678899999999999999999999876655555
Q ss_pred CCceeeE
Q 043490 450 YPGLSWI 456 (589)
Q Consensus 450 ~~~~s~~ 456 (589)
....+|.
T Consensus 329 SAti~YT 335 (539)
T PF04184_consen 329 SATICYT 335 (539)
T ss_pred hHHHHHH
Confidence 5555543
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.31 E-value=0.33 Score=45.09 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=26.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCC---ChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 388 LLGSCRKHGETRLAELAATKLKQLEPG---DSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 388 ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
|..++...|+++.|...|..+.+-.|. -+..+.-|.....+.|+.++|..+|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444555555555555554443332 223344444445555555555555555443
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=4.9 Score=38.00 Aligned_cols=136 Identities=8% Similarity=0.090 Sum_probs=79.6
Q ss_pred HHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-hhHHH---HHHHHHHHcCCHHH
Q 043490 225 ACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHD-LVSWN---SILKAYALHGQAKE 300 (589)
Q Consensus 225 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~---~li~~~~~~g~~~~ 300 (589)
.....|+...+..+++...... +-+...--.|...|...|+.+.|..++..++... ...|. +-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3467788888988888887765 4455667778889999999999999999988321 11121 22333333333333
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHh
Q 043490 301 ALQLFSNMNVQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLG 361 (589)
Q Consensus 301 A~~~~~~m~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 361 (589)
...+-++..-.| |...-..+...+...|+.++|.+.+-.++++..-.-|...-..|++.+.
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 333333332345 4445555666777778888777766555444222223334444444433
No 241
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.27 E-value=0.66 Score=47.55 Aligned_cols=106 Identities=20% Similarity=0.183 Sum_probs=61.6
Q ss_pred HhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHh
Q 043490 53 AKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKF 132 (589)
Q Consensus 53 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~ 132 (589)
.++|+++.|.++-++.. +...|..|.....++|+++-|.+.|.+...
T Consensus 329 l~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------------------------------- 375 (443)
T PF04053_consen 329 LQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD------------------------------- 375 (443)
T ss_dssp HHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT--------------------------------
T ss_pred HhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------------------------------
Confidence 34444555544444333 566888888888888888888888876643
Q ss_pred cCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHH
Q 043490 133 SLDAHVYVANALINMYSK-SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEAL 201 (589)
Q Consensus 133 g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~ 201 (589)
+..|+-.|.- |+.+.-.++-+....++ -+|....++.-.|+.++..+++.+.|++.+|.
T Consensus 376 --------~~~L~lLy~~~g~~~~L~kl~~~a~~~~--~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~ 435 (443)
T PF04053_consen 376 --------FSGLLLLYSSTGDREKLSKLAKIAEERG--DINIAFQAALLLGDVEECVDLLIETGRLPEAA 435 (443)
T ss_dssp --------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHH
T ss_pred --------ccccHHHHHHhCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCCHHHHHHHHHHcCCchHHH
Confidence 3455555666 77666655554433221 24555555555567777777777777766653
No 242
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.27 E-value=0.24 Score=49.60 Aligned_cols=60 Identities=12% Similarity=-0.007 Sum_probs=32.8
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 043490 352 HYACMVDLLGRVGRILEAEKLIREM-PMEPDS----VIWSVLLGSCRKHGETRLAELAATKLKQL 411 (589)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 411 (589)
.++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455555555555555555555553 444442 23555666666666666666666665554
No 243
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.13 E-value=16 Score=44.59 Aligned_cols=275 Identities=16% Similarity=0.092 Sum_probs=149.6
Q ss_pred HHHHHHHHhc-CCHHHHHHHHh-hCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HH
Q 043490 141 ANALINMYSK-SCADEAWKVFE-NMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPD-WC 217 (589)
Q Consensus 141 ~~~li~~y~~-g~~~~A~~lf~-~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 217 (589)
+-.+...|+. +++|....+.. ....++.. + -|.-. ...|++..|...|+++.+.+ |+ ..
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~--~-qil~~-------------e~~g~~~da~~Cye~~~q~~--p~~~~ 1484 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFADPSLY--Q-QILEH-------------EASGNWADAAACYERLIQKD--PDKEK 1484 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhcCccHH--H-HHHHH-------------HhhccHHHHHHHHHHhhcCC--Ccccc
Confidence 3344457777 77776666555 23333321 1 22222 67799999999999998764 44 66
Q ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHH-HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHH-HH-HHHH
Q 043490 218 TFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIAN-ALIHAYARCGSISLSKQVFDKMTYHDLVSWNSI-LK-AYAL 294 (589)
Q Consensus 218 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~ 294 (589)
+++-++......+.++...-..+-.... ..+...-++ .=+.+--+.++++....... ..+..+|.+. +. ...+
T Consensus 1485 ~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~ 1560 (2382)
T KOG0890|consen 1485 HHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLR 1560 (2382)
T ss_pred chhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHh
Confidence 7887777777777777666544433322 233333333 33445567788877776665 5566666665 22 2222
Q ss_pred cC--CHH---HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHH----H------HHhHHhcCCccCcch------H
Q 043490 295 HG--QAK---EALQLFSNMNVQPDSATFVSLLSACSHAGLVQEGNKV----F------HSMLENHGVVPQLDH------Y 353 (589)
Q Consensus 295 ~g--~~~---~A~~~~~~m~~~p~~~t~~~ll~a~~~~g~~~~a~~~----~------~~~~~~~~~~p~~~~------~ 353 (589)
.. +.- +.++..++.-+. =+.+|+..|.+..+.++ + .......++.++..+ |
T Consensus 1561 ~~~kD~~~~~~~i~~~r~~~i~--------~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W 1632 (2382)
T KOG0890|consen 1561 NKKKDEIATLDLIENSRELVIE--------NLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNW 1632 (2382)
T ss_pred hcccchhhHHHHHHHHHHHhhh--------hHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhH
Confidence 11 111 122222222111 11222222222122111 1 111111233343221 2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 043490 354 ACMVDLLGRVGRILEAEKLIREM----PMEP-----DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSN 424 (589)
Q Consensus 354 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 424 (589)
..-+..-....+..+-+--+++. ..+| -..+|-...+.++.+|.++.|....-.+.+..+ +..+.-.+.
T Consensus 1633 ~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK 1710 (2382)
T KOG0890|consen 1633 KNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAK 1710 (2382)
T ss_pred HHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHH
Confidence 11121111111122222222221 1122 267899999999999999999998888877774 467889999
Q ss_pred HhhhcCChHHHHHHHHHHhcCCC
Q 043490 425 IYCLSGSFNKARLIRKEMKGSRV 447 (589)
Q Consensus 425 ~~~~~g~~~~a~~~~~~m~~~~~ 447 (589)
.....|+-..|+.++++..+...
T Consensus 1711 ~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1711 LLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHhhccHHHHHHHHHHHHHhhc
Confidence 99999999999999998875544
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.03 E-value=3.1 Score=35.05 Aligned_cols=87 Identities=14% Similarity=0.123 Sum_probs=63.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCC
Q 043490 8 YATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHG 87 (589)
Q Consensus 8 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 87 (589)
...++..+...+........++.+.+..+ .++..+|.++..|++.+ ..+....+.. ..+.......++.|.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~---~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS---ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc---cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcC
Confidence 45677777778888888998888887633 67788999999998764 4455555552 234555666788888888
Q ss_pred ChhHHHHHHHHHH
Q 043490 88 NAEECFRLFCSLL 100 (589)
Q Consensus 88 ~~~~A~~~~~~m~ 100 (589)
.++++.-++.++.
T Consensus 84 l~~~~~~l~~k~~ 96 (140)
T smart00299 84 LYEEAVELYKKDG 96 (140)
T ss_pred cHHHHHHHHHhhc
Confidence 8888888887764
No 245
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.02 E-value=0.36 Score=44.74 Aligned_cols=96 Identities=20% Similarity=0.255 Sum_probs=72.2
Q ss_pred HHHHHhhcC--CCChhHHHHHHHHHHHc-----CCHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccC-----------
Q 043490 270 SKQVFDKMT--YHDLVSWNSILKAYALH-----GQAKEALQLFSNM---NVQPDSATFVSLLSACSHAG----------- 328 (589)
Q Consensus 270 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m---~~~p~~~t~~~ll~a~~~~g----------- 328 (589)
.++.|.... ++|-.+|-+++..+..+ ++.+-....++.| |+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666666 67888888888887654 4555444555555 99999999999998765532
Q ss_pred -----cHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCH
Q 043490 329 -----LVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRI 366 (589)
Q Consensus 329 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 366 (589)
.-+=+.+++++| +.+|+.||.++-..|++++++.+-.
T Consensus 133 ~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhcccccc
Confidence 234578899999 7789999999999999999998853
No 246
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.92 E-value=7.7 Score=38.91 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=57.2
Q ss_pred HHHHhCCCCC----CHHHHHHHHHH--HHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 371 KLIREMPMEP----DSVIWSVLLGS--CRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 371 ~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
.++++.++.| +...-|.|..| +..+|++.++...-.-+.+..| ++.+|..++-......++++|..++..+.
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 3444455555 34556666654 5788999999988888899999 99999999999999999999999998754
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.83 E-value=2 Score=35.95 Aligned_cols=17 Identities=24% Similarity=0.112 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhcCCCC
Q 043490 399 RLAELAATKLKQLEPGD 415 (589)
Q Consensus 399 ~~a~~~~~~~~~~~p~~ 415 (589)
..|...|+++++.-|++
T Consensus 116 ~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 116 RQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHHHHCcCC
Confidence 45555566666655643
No 248
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.60 E-value=0.99 Score=42.02 Aligned_cols=102 Identities=17% Similarity=0.182 Sum_probs=63.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHH
Q 043490 316 TFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM----PMEPD-SVIWSVLL 389 (589)
Q Consensus 316 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll 389 (589)
.|+.-+..+ ..|++..|...|...++++.-.+ ....+--|...+...|++++|..+|..+ |-.|- +...--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555443 34667777777777766542211 2234445677777777777777777666 32332 45555666
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCChhH
Q 043490 390 GSCRKHGETRLAELAATKLKQLEPGDSLG 418 (589)
Q Consensus 390 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 418 (589)
....+.|+.+.|...++++.+.-|..+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 67777888888888888888877765443
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.58 E-value=0.71 Score=38.63 Aligned_cols=56 Identities=21% Similarity=0.175 Sum_probs=33.1
Q ss_pred hhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh
Q 043490 361 GRVGRILEAEKLIREM----PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDS 416 (589)
Q Consensus 361 ~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 416 (589)
.+.|++++|.+.|+.+ |..| ....---|+.+|.+.++++.|...+++.++++|.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 3455555665555555 2222 133444566677777777777777777777776543
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.38 E-value=1.4 Score=45.31 Aligned_cols=130 Identities=20% Similarity=0.238 Sum_probs=78.0
Q ss_pred HHHcCCHHHHHHHHH--hC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHH
Q 043490 292 YALHGQAKEALQLFS--NM-NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILE 368 (589)
Q Consensus 292 ~~~~g~~~~A~~~~~--~m-~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 368 (589)
....|+++++.++.+ ++ .--| ..-...++.-+.+.|-.+.|.++-..-.. -.+...++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHH
Confidence 345666777665554 22 1112 33456666666777777777776544322 2355667888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 369 AEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 369 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
|.++.++.. +...|..|......+|+++.|++.+++.. -+..|+-.|.-.|+.+.-.++.+....+|
T Consensus 337 A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 888776643 67788888888888888888888887663 34567777777888777777666665554
No 251
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.36 E-value=5.5 Score=35.77 Aligned_cols=159 Identities=13% Similarity=0.118 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHH
Q 043490 283 VSWNSILKAYALHGQAKEALQLFSNM-NVQPDS-ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLL 360 (589)
Q Consensus 283 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 360 (589)
..||-+.--+...|+++.|.+.|+.. .+.|.. .+...-.-++--.|++..|.+-|...-+. .|+. .|.+|---+
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~D-PfR~LWLYl 175 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPND-PFRSLWLYL 175 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc---CCCC-hHHHHHHHH
Confidence 46666666677777888888877777 666642 23322222333457777776655443322 2321 222222111
Q ss_pred -hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-------hhHHHHHHHHhhhcCCh
Q 043490 361 -GRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGD-------SLGFVQMSNIYCLSGSF 432 (589)
Q Consensus 361 -~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~ 432 (589)
-+.-+..+|..-+.+--...|..-|...|-.+.--+=.+ +.+++++.+...++ ..+|.-|..-|...|+.
T Consensus 176 ~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~ 253 (297)
T COG4785 176 NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDL 253 (297)
T ss_pred HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccH
Confidence 123345555544332211345566665554443222111 22334443322222 46788899999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 043490 433 NKARLIRKEMKGSRV 447 (589)
Q Consensus 433 ~~a~~~~~~m~~~~~ 447 (589)
++|..+|+-....++
T Consensus 254 ~~A~~LfKLaiannV 268 (297)
T COG4785 254 DEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHhH
Confidence 999999998776554
No 252
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.14 E-value=0.68 Score=37.64 Aligned_cols=88 Identities=18% Similarity=0.095 Sum_probs=48.9
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHc
Q 043490 323 ACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM----PMEP--DSVIWSVLLGSCRKH 395 (589)
Q Consensus 323 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p--~~~~~~~ll~~~~~~ 395 (589)
+.+..|+++.|.+.|.+.+ .+-| ....||.-..+|.-.|+.++|++-+++. +-+- --..|..-...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3445566666666665554 2233 4556666666666666666666655554 1110 012233333456677
Q ss_pred CCHHHHHHHHHHHhhcCC
Q 043490 396 GETRLAELAATKLKQLEP 413 (589)
Q Consensus 396 g~~~~a~~~~~~~~~~~p 413 (589)
|+.+.|..-|+..-+++.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 777777777777766654
No 253
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.09 E-value=0.2 Score=30.17 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 043490 383 VIWSVLLGSCRKHGETRLAELAATKLKQLEPG 414 (589)
Q Consensus 383 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 414 (589)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888874
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.06 E-value=4.8 Score=33.90 Aligned_cols=99 Identities=18% Similarity=0.233 Sum_probs=62.6
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhcCC
Q 043490 73 VVSWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSKSC 152 (589)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~g~ 152 (589)
...-..++..+.+.+.+......++.+... + ..+....|.++..|++-+
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~------------------------------~-~~~~~~~~~li~ly~~~~ 55 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKL------------------------------N-SENPALQTKLIELYAKYD 55 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHcc------------------------------C-ccchhHHHHHHHHHHHHC
Confidence 344556777777777788888877776543 2 245567788888888833
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHH
Q 043490 153 ADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLF 204 (589)
Q Consensus 153 ~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~ 204 (589)
.++....+.. ..+.......+..|.+.+.++++.-++.+.|++++|+++.
T Consensus 56 ~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~ 105 (140)
T smart00299 56 PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTL 105 (140)
T ss_pred HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHH
Confidence 4444555552 2333444556667766666666666677777766666554
No 255
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.94 E-value=6.9 Score=35.40 Aligned_cols=218 Identities=16% Similarity=0.072 Sum_probs=155.3
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 043490 195 KNEEEALFLFRQLQREGMA-PDWCTFSIVLKACAGLVTERHASAVHSLIAKY-GFEDDTVIANALIHAYARCGSISLSKQ 272 (589)
Q Consensus 195 g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~ 272 (589)
+....+...+......... .....+......+...+++..+...+...... ........+..+...+...++++.+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555543322 13566777777778888888888888777653 335566777778888888888999999
Q ss_pred HHhhcCC--CCh-hHHHHHHH-HHHHcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 043490 273 VFDKMTY--HDL-VSWNSILK-AYALHGQAKEALQLFSNM-NVQP----DSATFVSLLSACSHAGLVQEGNKVFHSMLEN 343 (589)
Q Consensus 273 ~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 343 (589)
.+..... ++. ........ .+...|+.++|...|.+. ...| ....+......+...++.+.+...+....+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 9988774 222 33333444 788999999999999998 5444 2334444445567788999999999888643
Q ss_pred cCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 043490 344 HGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPG 414 (589)
Q Consensus 344 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 414 (589)
. .. ....+..+...+...+.+++|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 197 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 N--PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred C--cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 1 22 3567888888899999999999999888 44555 455555666666777899999999999998885
No 256
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.92 E-value=0.31 Score=29.23 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 043490 383 VIWSVLLGSCRKHGETRLAELAATKLKQLEPGD 415 (589)
Q Consensus 383 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 415 (589)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777788888888888888888887753
No 257
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.87 E-value=3 Score=43.44 Aligned_cols=25 Identities=8% Similarity=-0.219 Sum_probs=14.4
Q ss_pred HHHHHHHhCcCcHHHHHHHHHHHHH
Q 043490 220 SIVLKACAGLVTERHASAVHSLIAK 244 (589)
Q Consensus 220 ~~ll~a~~~~~~~~~a~~i~~~~~~ 244 (589)
..+++...-.||-+.|.+.+....+
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 3444455555666666666665544
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=5.8 Score=37.52 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=7.9
Q ss_pred HHHHHhccCcHHHHHHHHH
Q 043490 320 LLSACSHAGLVQEGNKVFH 338 (589)
Q Consensus 320 ll~a~~~~g~~~~a~~~~~ 338 (589)
+..++...|+.+.|..++.
T Consensus 174 la~~~l~~g~~e~A~~iL~ 192 (304)
T COG3118 174 LAECLLAAGDVEAAQAILA 192 (304)
T ss_pred HHHHHHHcCChHHHHHHHH
Confidence 3334444444444444443
No 259
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.76 E-value=16 Score=39.25 Aligned_cols=77 Identities=16% Similarity=0.162 Sum_probs=55.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhCCCCCC---ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCC
Q 043490 12 FHACALHGNIKQAMQLHEHMINNFPNEPQ---DLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHGN 88 (589)
Q Consensus 12 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 88 (589)
++++.+.+.+++|+.+-+.... ..+ -..++...|..|.-.|++++|-.+.-.|...+..-|-.-+.-++..++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~----~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG----NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC----CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccc
Confidence 4556667777777775554432 223 345677888888888999999888888888888888887777777776
Q ss_pred hhHH
Q 043490 89 AEEC 92 (589)
Q Consensus 89 ~~~A 92 (589)
....
T Consensus 439 l~~I 442 (846)
T KOG2066|consen 439 LTDI 442 (846)
T ss_pred cchh
Confidence 6543
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.59 E-value=2.8 Score=40.11 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=90.5
Q ss_pred hcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHH----HHHHhccCcHHHH
Q 043490 263 RCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM--NVQPDSATFVSL----LSACSHAGLVQEG 333 (589)
Q Consensus 263 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~l----l~a~~~~g~~~~a 333 (589)
-.|+..+|-..++++. ..|..+|+-.=.+|..+|+...-...++++ ...||...|.-+ .-++...|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4566666666666665 457778887778888888888888888887 445665433322 2233467788888
Q ss_pred HHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHH
Q 043490 334 NKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREMPMEPD-------SVIWSVLLGSCRKHGETRLAELAA 405 (589)
Q Consensus 334 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-------~~~~~~ll~~~~~~g~~~~a~~~~ 405 (589)
++.-++.. .+.| |.-.-.++...+--.|++.++.+++.+-.-.-+ -.-|... -.+...+.++.|+.+|
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A-l~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA-LFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH-HhhhcccchhHHHHHH
Confidence 77766543 3333 333445666667777888888888776521100 1112221 2234447788888887
Q ss_pred HHH--hhcCCCCh
Q 043490 406 TKL--KQLEPGDS 416 (589)
Q Consensus 406 ~~~--~~~~p~~~ 416 (589)
++= .+++.+|.
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 653 34555554
No 261
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.53 E-value=0.62 Score=44.02 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 382 SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 382 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
..++..++..+...|+.+.+...++++...+|-+...|..++.+|.+.|+...|+..++.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345566777888888999999999999999999999999999999999999999999988765
No 262
>PRK11906 transcriptional regulator; Provisional
Probab=92.46 E-value=2.4 Score=42.82 Aligned_cols=128 Identities=9% Similarity=0.067 Sum_probs=92.0
Q ss_pred HHHHHHHhc-----cCcHHHHHHHHHHhHHhcCCccCc-chHHHHHHHHhh---------cCCHHHHHHHHHhC-CCCC-
Q 043490 318 VSLLSACSH-----AGLVQEGNKVFHSMLENHGVVPQL-DHYACMVDLLGR---------VGRILEAEKLIREM-PMEP- 380 (589)
Q Consensus 318 ~~ll~a~~~-----~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p- 380 (589)
..++.+..+ ....+.|..+|.+.+....+.|+- ..|..+...+.. .....+|.++.++. .+.|
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 445555443 124667888898887555667753 344433332221 23455666766666 4444
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 381 DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 381 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
|......+..+....++++.|...|+++..++|+.+.+|........-+|+.++|.+.+++..+.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 57777777777788888999999999999999999999999999999999999999999985543
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.42 E-value=7.3 Score=39.68 Aligned_cols=97 Identities=16% Similarity=0.268 Sum_probs=69.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCC--HHHHHHHHHHHH
Q 043490 318 VSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMP-M-EPD--SVIWSVLLGSCR 393 (589)
Q Consensus 318 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~--~~~~~~ll~~~~ 393 (589)
..+..++-+.|+.++|.+.+.+|.+.+.......+...|+..|...+.+.++..++.+-. + -|. ...|+..+-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 346666678999999999999998765433345577889999999999999999998873 2 243 456666554444
Q ss_pred HcCCH---------------HHHHHHHHHHhhcCCC
Q 043490 394 KHGET---------------RLAELAATKLKQLEPG 414 (589)
Q Consensus 394 ~~g~~---------------~~a~~~~~~~~~~~p~ 414 (589)
..++- ..|.++..++.+.+|.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 44431 2355777888777764
No 264
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.33 E-value=0.51 Score=30.54 Aligned_cols=41 Identities=20% Similarity=0.120 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHH
Q 043490 6 QIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLI 49 (589)
Q Consensus 6 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 49 (589)
.++..+...+.+.|++++|.++++.+++..| .|+..+..|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P---~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP---DDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---CCHHHHHHhh
Confidence 4566778888888888888888888888766 6666665543
No 265
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.29 E-value=9.5 Score=35.40 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=45.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCChh---HHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 388 LLGSCRKHGETRLAELAATKLKQLEPGDSL---GFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 388 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
+..-|.+.|.+..|..-++.+++.-|..+. .+..|.++|.+.|..++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 456688999999999999999987664433 4567788999999999999987766543
No 266
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.28 E-value=19 Score=39.11 Aligned_cols=83 Identities=17% Similarity=0.062 Sum_probs=36.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHh---cCC
Q 043490 191 FAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYG-FEDDTVIANALIHAYAR---CGS 266 (589)
Q Consensus 191 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~~~~---~g~ 266 (589)
+.-.|+++.|++.+.+ ..+...|.+.+...+.-+.-..-.+... ..+.... -.|...-+..||..|.+ ..+
T Consensus 268 LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~td 342 (613)
T PF04097_consen 268 LLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEITD 342 (613)
T ss_dssp HHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT-
T ss_pred HHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhccC
Confidence 3566777777777665 2334566777777666654332222211 1111111 01111345667777765 356
Q ss_pred HHHHHHHHhhcC
Q 043490 267 ISLSKQVFDKMT 278 (589)
Q Consensus 267 ~~~A~~~~~~~~ 278 (589)
..+|.++|--+.
T Consensus 343 ~~~Al~Y~~li~ 354 (613)
T PF04097_consen 343 PREALQYLYLIC 354 (613)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHH
Confidence 677777776655
No 267
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.04 E-value=17 Score=37.87 Aligned_cols=177 Identities=11% Similarity=0.112 Sum_probs=121.0
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCHHHHHHH
Q 043490 249 DDTVIANALIHAYARCGSISLSKQVFDKMTYHD---LVSWNSILKAYALHGQAKEALQLFSNM-----NVQPDSATFVSL 320 (589)
Q Consensus 249 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~t~~~l 320 (589)
++..+|..-++--.+.|+.+.+.-.|++...|- ...|--.+.-....|+.+-|..++... .-.|....+.+.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 456778888888889999999999999887442 245655555555568888888877776 233333333333
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCccCc-chHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHHH----
Q 043490 321 LSACSHAGLVQEGNKVFHSMLENHGVVPQL-DHYACMVDLLGRVGRILEAE---KLIREM-PMEPDSVIWSVLLGS---- 391 (589)
Q Consensus 321 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~~---- 391 (589)
+ +-..|+.+.|..+++.+.... |+. ..-..-+....+.|..+.+. +++... +.+-+..+...+.--
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 3 345689999999999987643 543 23333456677888888888 555544 222233333333322
Q ss_pred -HHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcC
Q 043490 392 -CRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSG 430 (589)
Q Consensus 392 -~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 430 (589)
+...++.+.|..++.++.+..|++...|..+++.....+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 344578999999999999999999999999998877665
No 268
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.85 E-value=7 Score=40.73 Aligned_cols=115 Identities=11% Similarity=0.032 Sum_probs=75.1
Q ss_pred cCcHHHHHHHHHHhHHhcCCccCcchHHHH-HHHHhhcCCHHHHHHHHHhCC-CC-----CCHHHHHHHHHHHHHcCCHH
Q 043490 327 AGLVQEGNKVFHSMLENHGVVPQLDHYACM-VDLLGRVGRILEAEKLIREMP-ME-----PDSVIWSVLLGSCRKHGETR 399 (589)
Q Consensus 327 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~-~~-----p~~~~~~~ll~~~~~~g~~~ 399 (589)
....+.+.+++..+.++ -|+...|... ...+...|++++|.+.|++.- .+ .....+--+.-.+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 45667778888777655 3665554433 244556788888888888651 11 12233334556677788999
Q ss_pred HHHHHHHHHhhcCCCChhHHH-HHHHHhhhcCCh-------HHHHHHHHHHhc
Q 043490 400 LAELAATKLKQLEPGDSLGFV-QMSNIYCLSGSF-------NKARLIRKEMKG 444 (589)
Q Consensus 400 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~m~~ 444 (589)
+|...|.++.+...-+...|. ..+-+|...|+. ++|.+++.+...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999887665555555 444456677888 888888877654
No 269
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.80 E-value=16 Score=36.86 Aligned_cols=45 Identities=9% Similarity=0.101 Sum_probs=26.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHh-CC-CCCCChhHHHHHHHHHHhc
Q 043490 11 LFHACALHGNIKQAMQLHEHMINN-FP-NEPQDLFVTNHLINMYAKF 55 (589)
Q Consensus 11 ll~~~~~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~li~~~~~~ 55 (589)
.++.+...|++.+|+.+++++... ++ ....++.+||.++-++++.
T Consensus 134 ~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 134 EAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 345555667777777777666665 22 2224666666666666554
No 270
>PRK15331 chaperone protein SicA; Provisional
Probab=91.27 E-value=1.7 Score=37.30 Aligned_cols=85 Identities=12% Similarity=-0.050 Sum_probs=45.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSK 271 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 271 (589)
-+.|++++|..+|+-+...+. -+..-+..|..++-..+.++.|...|......+ ..|....--....|...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 466777777777776655321 122223333333445566677776666655444 223333333455566666666666
Q ss_pred HHHhhcC
Q 043490 272 QVFDKMT 278 (589)
Q Consensus 272 ~~~~~~~ 278 (589)
..|....
T Consensus 126 ~~f~~a~ 132 (165)
T PRK15331 126 QCFELVN 132 (165)
T ss_pred HHHHHHH
Confidence 6665554
No 271
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.04 E-value=28 Score=38.28 Aligned_cols=191 Identities=16% Similarity=0.166 Sum_probs=105.1
Q ss_pred HhcCCHHHHHHHHhhcC----CCCh-------hHHHHHHHHH-HHcCCHHHHHHHHHhC--CC-----CCCHHHHHHHHH
Q 043490 262 ARCGSISLSKQVFDKMT----YHDL-------VSWNSILKAY-ALHGQAKEALQLFSNM--NV-----QPDSATFVSLLS 322 (589)
Q Consensus 262 ~~~g~~~~A~~~~~~~~----~~~~-------~~~~~li~~~-~~~g~~~~A~~~~~~m--~~-----~p~~~t~~~ll~ 322 (589)
....++++|..++.+.. .++. ..|+++-... ...|++++|+++-+.. .+ .+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34577778877776654 2222 2566554333 3568888888888777 22 234456666677
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHH-----HHHhhcCCH--HHHHHHHHhC-----CCCC----CHHHHH
Q 043490 323 ACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMV-----DLLGRVGRI--LEAEKLIREM-----PMEP----DSVIWS 386 (589)
Q Consensus 323 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-----~~~~~~g~~--~~A~~~~~~m-----~~~p----~~~~~~ 386 (589)
+..-.|++++|..+.+...+. .-.-+..++.... ..+-..|+. ++.+..|... +-+| -..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777789999998877655322 1122333333222 224455632 2223333322 1122 233444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcC----CCChh---HHHHHHHHhhhcCChHHHHHHHHHHhcCCCccCCceeeE
Q 043490 387 VLLGSCRKHGETRLAELAATKLKQLE----PGDSL---GFVQMSNIYCLSGSFNKARLIRKEMKGSRVRKYPGLSWI 456 (589)
Q Consensus 387 ~ll~~~~~~g~~~~a~~~~~~~~~~~----p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 456 (589)
.++.++.+ .+.+..-.....+.. |.... .+..|+..+...|+.++|...++++........+.+.|.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 55555554 455554444443322 32211 233788889999999999999998876544433444443
No 272
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.75 E-value=1.5 Score=41.51 Aligned_cols=73 Identities=14% Similarity=0.290 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCCHHHHHH
Q 043490 251 TVIANALIHAYARCGSISLSKQVFDKMTY---HDLVSWNSILKAYALHGQAKEALQLFSNM--------NVQPDSATFVS 319 (589)
Q Consensus 251 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~t~~~ 319 (589)
..++..++..+..+|+.+.+...+++... -|...|..++.+|.+.|+...|+..|+++ |+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45677888999999999999988888773 46678999999999999999999998887 78887766665
Q ss_pred HHHH
Q 043490 320 LLSA 323 (589)
Q Consensus 320 ll~a 323 (589)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
No 273
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.74 E-value=2.9 Score=40.01 Aligned_cols=157 Identities=14% Similarity=0.052 Sum_probs=115.3
Q ss_pred HcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHH----HhhcCCHH
Q 043490 294 LHGQAKEALQLFSNM--NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDL----LGRVGRIL 367 (589)
Q Consensus 294 ~~g~~~~A~~~~~~m--~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~----~~~~g~~~ 367 (589)
-+|+..+|-..++++ ..+.|..++...=.+|...|+.+.-...++++.. ...||...|..+=.+ +..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 478888888888888 5555777888888999999999999999988764 346676655555444 45789999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC----ChhHHHHHHHHhhhcCChHHHHHHHHH
Q 043490 368 EAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPG----DSLGFVQMSNIYCLSGSFNKARLIRKE 441 (589)
Q Consensus 368 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 441 (589)
+|++.-++. .+.| |.-.-.++....--+|+.+++.++..+-...-.. -.-.|...+-.|...+.++.|..+|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999999888 5555 4556667777778889999999887765442221 123466777778888999999999987
Q ss_pred HhcCCCccCCc
Q 043490 442 MKGSRVRKYPG 452 (589)
Q Consensus 442 m~~~~~~~~~~ 452 (589)
=.-+.+.++.+
T Consensus 273 ei~k~l~k~Da 283 (491)
T KOG2610|consen 273 EIWKRLEKDDA 283 (491)
T ss_pred HHHHHhhccch
Confidence 55444544443
No 274
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.67 E-value=18 Score=36.02 Aligned_cols=66 Identities=23% Similarity=0.225 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC----CChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 380 PDSVIWSVLLGSCRKHGETRLAELAATKLKQLEP----GDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 380 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
....+|..+...++++|+++.|...+.++.+.++ ..+.....-+......|+..+|...++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3477899999999999999999999999988652 24566777788999999999999999888763
No 275
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.58 E-value=29 Score=37.78 Aligned_cols=75 Identities=11% Similarity=0.126 Sum_probs=37.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-cCCCChhHHHHHHHHhhhcCC
Q 043490 356 MVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQ-LEPGDSLGFVQMSNIYCLSGS 431 (589)
Q Consensus 356 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~ 431 (589)
++..+.+..+.+.+..+.+..+ +-++..|..++..+.+.+..+.-.+...++++ ....+...-..+++++++.+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g-~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG-KEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC-ccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 3444555556666666666654 22566677777777766655544444444332 111122222345555555544
No 276
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.47 E-value=9.4 Score=37.13 Aligned_cols=218 Identities=12% Similarity=0.011 Sum_probs=120.8
Q ss_pred HcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh--CCCCc---HHHHHHHHHHHHhcC
Q 043490 193 KMKNEEEALFLFRQLQREG--MAPDWCTFSIVLKACAGLVTERHASAVHSLIAKY--GFEDD---TVIANALIHAYARCG 265 (589)
Q Consensus 193 ~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~---~~~~~~li~~~~~~g 265 (589)
+..+.++|+..+.+-...- ..--..+|..+..+.++.|..+++...--.-+.. ..... -..|..|..++-+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666665544320 1112245666666777777766654432211111 01111 123334444444444
Q ss_pred CHHHHHHHHhhcC------C-C-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-----CC--CHHHHHHHHHHHhccCc
Q 043490 266 SISLSKQVFDKMT------Y-H-DLVSWNSILKAYALHGQAKEALQLFSNM-NV-----QP--DSATFVSLLSACSHAGL 329 (589)
Q Consensus 266 ~~~~A~~~~~~~~------~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-----~p--~~~t~~~ll~a~~~~g~ 329 (589)
++.+++.+=..-. . . .-...-+|..++.-.+.++++++.|+.. .+ .| .-..+..|-+.+.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 4444444432211 1 1 1123344667777788899999999987 21 12 23578888888999999
Q ss_pred HHHHHHHHHHh---HHhcCCccCcchHHHHH-----HHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHH
Q 043490 330 VQEGNKVFHSM---LENHGVVPQLDHYACMV-----DLLGRVGRILEAEKLIREM-------PMEPD-SVIWSVLLGSCR 393 (589)
Q Consensus 330 ~~~a~~~~~~~---~~~~~~~p~~~~~~~li-----~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~ 393 (589)
+++|.-+.... +..+++..-..-|.+++ -+|-..|++-+|.+.-++. |-+|- ......+...|+
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 99887655432 23444433223344332 3455566665555555443 53443 556677888999
Q ss_pred HcCCHHHHHHHHHHHhh
Q 043490 394 KHGETRLAELAATKLKQ 410 (589)
Q Consensus 394 ~~g~~~~a~~~~~~~~~ 410 (589)
..|+.|.|..-++.+..
T Consensus 258 ~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQAMG 274 (518)
T ss_pred hcccHhHHHHHHHHHHH
Confidence 99999999888777643
No 277
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.29 E-value=9.9 Score=32.93 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=9.2
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 043490 192 AKMKNEEEALFLFRQLQR 209 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~ 209 (589)
.+.|+...|...|.+.-.
T Consensus 105 a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 105 AQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred hhcccHHHHHHHHHHHhc
Confidence 444555555555555443
No 278
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.25 E-value=0.37 Score=29.17 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=24.2
Q ss_pred HHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHH
Q 043490 28 HEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDAR 62 (589)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 62 (589)
|.+.++..| .++.+|+.|...|...|++++|+
T Consensus 2 y~kAie~~P---~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP---NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC---CCHHHHHHHHHHHHHCcCHHhhc
Confidence 445555556 78888888888888888888876
No 279
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.04 E-value=11 Score=32.23 Aligned_cols=91 Identities=16% Similarity=0.073 Sum_probs=56.7
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCccCcc-hHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCC
Q 043490 320 LLSACSHAGLVQEGNKVFHSMLENHGVVPQLD-HYACMVDLLGRVGRILEAEKLIREM-PMEPDSVIWSVLLGSCRKHGE 397 (589)
Q Consensus 320 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~ 397 (589)
+++.-...++.+++..++..+. -+.|... .-..-.-.+.+.|++.+|..+|+++ .-.|....-.+|+..|....+
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 3344456778888888888774 4456433 2223344567888899999998888 333455555667777766655
Q ss_pred HHHHHHHHHHHhhcCC
Q 043490 398 TRLAELAATKLKQLEP 413 (589)
Q Consensus 398 ~~~a~~~~~~~~~~~p 413 (589)
-..=....+++.+.++
T Consensus 93 D~~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 93 DPSWRRYADEVLESGA 108 (160)
T ss_pred ChHHHHHHHHHHhcCC
Confidence 4445555566666655
No 280
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.02 E-value=0.075 Score=45.30 Aligned_cols=71 Identities=15% Similarity=0.263 Sum_probs=54.4
Q ss_pred cCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHH
Q 043490 133 SLDAHVYVANALINMYSK-SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQ 206 (589)
Q Consensus 133 g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~ 206 (589)
+...+....+.++..|++ ++.+...+.++.... .-...++..+-+.|.+++|.-+|.+.|++++|+++...
T Consensus 37 ~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~~ 108 (143)
T PF00637_consen 37 NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAVYLYSKLGNHDEALEILHK 108 (143)
T ss_dssp STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSSTSSS
T ss_pred ccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHHHHHHHcccHHHHHHHHHH
Confidence 335667888999999999 887888888874433 44456778888888999999999999999988875433
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.66 E-value=0.55 Score=28.81 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=21.7
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 418 GFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 418 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
+|..|.++|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999998844
No 282
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.61 E-value=17 Score=33.72 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=32.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHh
Q 043490 288 ILKAYALHGQAKEALQLFSNM-NVQPD----SATFVSLLSACSHAGLVQEGNKVFHSM 340 (589)
Q Consensus 288 li~~~~~~g~~~~A~~~~~~m-~~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~ 340 (589)
+..-|.+.|.+..|..-+++| .--|+ ...+-.+..+|...|..++|.+.-.-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 344567777777777777777 22222 234555666777777777776665544
No 283
>PRK09687 putative lyase; Provisional
Probab=89.43 E-value=21 Score=34.32 Aligned_cols=60 Identities=17% Similarity=0.131 Sum_probs=34.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCh----hHHHHHHHHH
Q 043490 40 QDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHGNA----EECFRLFCSL 99 (589)
Q Consensus 40 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m 99 (589)
+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .+++.++..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 56666666666666666544433333333445666666666666666653 3455555555
No 284
>PRK12798 chemotaxis protein; Reviewed
Probab=89.33 E-value=25 Score=35.19 Aligned_cols=180 Identities=16% Similarity=0.183 Sum_probs=117.4
Q ss_pred cCCHHHHHHHHhhcCC----CChhHHHHHHHHHH-HcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHhccCcHHHH
Q 043490 264 CGSISLSKQVFDKMTY----HDLVSWNSILKAYA-LHGQAKEALQLFSNM-NVQP----DSATFVSLLSACSHAGLVQEG 333 (589)
Q Consensus 264 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~~~~~m-~~~p----~~~t~~~ll~a~~~~g~~~~a 333 (589)
.|+.++|.+.+..+.. +....+-.|+.+-. ...+..+|+++|+.. =.-| .......-+-...+.|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 5888888888888862 34456666666544 456789999999988 3334 344555556667788999998
Q ss_pred HHHHHHhHHhcCCccCcchHHH-HHHHHhhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 043490 334 NKVFHSMLENHGVVPQLDHYAC-MVDLLGRV---GRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLK 409 (589)
Q Consensus 334 ~~~~~~~~~~~~~~p~~~~~~~-li~~~~~~---g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 409 (589)
..+-.....++.-.|-...|.. ++..+.+. ...+.-..++..|.-.--...|..+...-...|+.+.|....++..
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~ 284 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERAL 284 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 8887777777766665443332 33333333 3455566666666312226788899999999999999999999998
Q ss_pred hcCCCChhHHHHHHHHhh-----hcCChHHHHHHHHHHhc
Q 043490 410 QLEPGDSLGFVQMSNIYC-----LSGSFNKARLIRKEMKG 444 (589)
Q Consensus 410 ~~~p~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~~ 444 (589)
.+... ...-...+..|. -..+.+++.+.+..+..
T Consensus 285 ~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 285 KLADP-DSADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 87632 222333344443 23446666666655443
No 285
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.10 E-value=2.5 Score=37.35 Aligned_cols=89 Identities=19% Similarity=0.100 Sum_probs=69.7
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCC
Q 043490 359 LLGRVGRILEAEKLIREM-PMEPD------SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGS 431 (589)
Q Consensus 359 ~~~~~g~~~~A~~~~~~m-~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 431 (589)
-+.+.|++++|..-|... ..-|. .+.|..-..+..+.+..+.|+.-..+.++++|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 456678888888877766 11221 34455556777888999999999999999999888888888899999999
Q ss_pred hHHHHHHHHHHhcCCC
Q 043490 432 FNKARLIRKEMKGSRV 447 (589)
Q Consensus 432 ~~~a~~~~~~m~~~~~ 447 (589)
+++|+.=++++.+...
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999887654
No 286
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.30 E-value=13 Score=30.62 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043490 287 SILKAYALHGQAKEALQLFSNM--NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLE 342 (589)
Q Consensus 287 ~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 342 (589)
.-+..+...|+-++-.+++.++ .-+|++.....+..||.+.|+..++.+++.+.-+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3445555666666666666665 3455666666666666666666666666665544
No 287
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.82 E-value=1.1 Score=26.76 Aligned_cols=30 Identities=20% Similarity=0.077 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 043490 384 IWSVLLGSCRKHGETRLAELAATKLKQLEP 413 (589)
Q Consensus 384 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 413 (589)
+|..+...+...|++++|...+++..+++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456666677777777777777777777666
No 288
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.80 E-value=19 Score=32.96 Aligned_cols=23 Identities=4% Similarity=-0.130 Sum_probs=16.3
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCC
Q 043490 393 RKHGETRLAELAATKLKQLEPGD 415 (589)
Q Consensus 393 ~~~g~~~~a~~~~~~~~~~~p~~ 415 (589)
...+++.+|+.+|+++....-++
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 45577888888888887654433
No 289
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.75 E-value=2.9 Score=39.65 Aligned_cols=98 Identities=14% Similarity=0.267 Sum_probs=72.7
Q ss_pred hcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCC-C--------ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHH
Q 043490 132 FSLDAHVYVANALINMYSK-SCADEAWKVFENMEF-R--------NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEAL 201 (589)
Q Consensus 132 ~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~-~--------~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~ 201 (589)
.|......+...++..-.. .+++++...+-++.. | ..++|--++..| ++++++
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky-----------------~pq~~i 120 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKY-----------------DPQKAI 120 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHcc-----------------ChHHHH
Confidence 3555556666677777776 888888887776653 2 234444444444 677888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhC
Q 043490 202 FLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYG 246 (589)
Q Consensus 202 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 246 (589)
.++..=++-|+-||.+|++.+|+.+.+.++...|.++...|....
T Consensus 121 ~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 121 YTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888999999999999999999999999888888777665
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.41 E-value=4.2 Score=34.83 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=29.9
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 393 RKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 393 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
...++.++++.++..+.-+.|..+..-..-...+...|+|.+|.++++.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34455555555555555555555555555555555666666666666555443
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.29 E-value=1.1 Score=27.43 Aligned_cols=27 Identities=15% Similarity=-0.034 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 043490 384 IWSVLLGSCRKHGETRLAELAATKLKQ 410 (589)
Q Consensus 384 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 410 (589)
+|..|...|.+.|++++|+.++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467778888888888888888888554
No 292
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.99 E-value=31 Score=33.43 Aligned_cols=126 Identities=11% Similarity=0.067 Sum_probs=73.7
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhc---C----CHHHHHHHHhhCCC-------CChhHHHHHHHHHHcCCcHHHHHHH
Q 043490 125 VHALALKFSLDAHVYVANALINMYSK---S----CADEAWKVFENMEF-------RNVISWNSMIAAFRACKLEAQAIEL 190 (589)
Q Consensus 125 ~~~~~~~~g~~~~~~~~~~li~~y~~---g----~~~~A~~lf~~m~~-------~~~~~~~~li~~~~~~g~~~~a~~~ 190 (589)
++..+.+.|+..+.+++-+..-+... . ....|..+|+.|.+ ++-.++.+|+..- ..+.+
T Consensus 84 ~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~--~~~~e----- 156 (297)
T PF13170_consen 84 IYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMT--SEDVE----- 156 (297)
T ss_pred HHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcc--cccHH-----
Confidence 34445555666665555442222222 2 24678899999974 3556666666531 11111
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhCcCc--HHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 043490 191 FAKMKNEEEALFLFRQLQREGMAPDW--CTFSIVLKACAGLVT--ERHASAVHSLIAKYGFEDDTVIANALIHAY 261 (589)
Q Consensus 191 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~--~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 261 (589)
.-.+++..+|+.+...|+..+. ...+.+|..+..... ...+.++++.+.+.|+++....|..+.-.-
T Consensus 157 ----~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 157 ----ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred ----HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 1135677788888888876543 344444444433322 447788889999999888877777665433
No 293
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.31 E-value=4.5 Score=34.04 Aligned_cols=53 Identities=17% Similarity=0.141 Sum_probs=37.8
Q ss_pred HcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 394 KHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 394 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
..++.++++.++..+.-+.|..+..-..-...+...|+|++|.++++.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36677777777777777777766666666667777777777777777776554
No 294
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.03 E-value=28 Score=32.09 Aligned_cols=52 Identities=21% Similarity=0.262 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 043490 353 YACMVDLLGRVGRILEAEKLIREM---P--MEP-DSVIWSVLLGSCRKHGETRLAELAA 405 (589)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m---~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 405 (589)
|-..|-.|.-..++..|...++.- | ..| +..+...|+.+|- .|+.++...++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 445555556666777777777663 1 112 3566666776664 45666555544
No 295
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=85.19 E-value=35 Score=32.37 Aligned_cols=151 Identities=17% Similarity=0.148 Sum_probs=77.1
Q ss_pred cCCcHHHHHHH-------HHHcCCHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHhCcC-----cHHHHHHHHHHHH
Q 043490 180 ACKLEAQAIEL-------FAKMKNEEEALFLFRQL----QREGMAPDWCTFSIVLKACAGLV-----TERHASAVHSLIA 243 (589)
Q Consensus 180 ~~g~~~~a~~~-------~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~a~~~~~-----~~~~a~~i~~~~~ 243 (589)
+++++++|+++ +.+.|+...|-++-.-| .+.+.++|.....-++..+.... ..+-..+....-
T Consensus 2 ~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS- 80 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS- 80 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-
T ss_pred ccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-
Confidence 45666666666 36677776665544333 44567777766555555443322 222222333333
Q ss_pred HhC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 043490 244 KYG--FEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNMNVQPDSATFVSLL 321 (589)
Q Consensus 244 ~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll 321 (589)
+.| -.-|+.....+...|.+.|++.+|+..|-.-..++...+..++.-....|...++ |...-.+++
T Consensus 81 ~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~-----------dlfi~RaVL 149 (260)
T PF04190_consen 81 KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA-----------DLFIARAVL 149 (260)
T ss_dssp HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H-----------HHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch-----------hHHHHHHHH
Confidence 222 1246778888889999999999998888766555544443344333333333222 222333344
Q ss_pred HHHhccCcHHHHHHHHHHhHHh
Q 043490 322 SACSHAGLVQEGNKVFHSMLEN 343 (589)
Q Consensus 322 ~a~~~~g~~~~a~~~~~~~~~~ 343 (589)
. |...++...|...+....+.
T Consensus 150 ~-yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 Q-YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp H-HHHTTBHHHHHHHHHHHHHH
T ss_pred H-HHHhcCHHHHHHHHHHHHHH
Confidence 3 33457788888777666543
No 296
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.94 E-value=65 Score=35.31 Aligned_cols=193 Identities=15% Similarity=0.098 Sum_probs=104.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHh-CC-C------------CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc
Q 043490 8 YATLFHACALHGNIKQAMQLHEHMINN-FP-N------------EPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNV 73 (589)
Q Consensus 8 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~-~------------~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~ 73 (589)
.+.++.++...+.+-.-.-+++.+.+. .. + ..........-+.++.+...++-|..+-..-.. |.
T Consensus 286 ~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~-d~ 364 (933)
T KOG2114|consen 286 SNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHL-DE 364 (933)
T ss_pred hhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCC-CH
Confidence 455566666666554444444444433 11 1 001112334556777777778888877765432 33
Q ss_pred chHHHHHH----HHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhc----hhhHHHHHHHHHHhcCCCchhHHHHHH
Q 043490 74 VSWTALIS----GYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCD----YLHGKLVHALALKFSLDAHVYVANALI 145 (589)
Q Consensus 74 ~~~~~li~----~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~----~~~~~~~~~~~~~~g~~~~~~~~~~li 145 (589)
..-..+.. -+-+.|++++|...|-+-...+.|.. +++-+. ...--.....+.+.|+.... .-+.|+
T Consensus 365 d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~-----Vi~kfLdaq~IknLt~YLe~L~~~gla~~d-httlLL 438 (933)
T KOG2114|consen 365 DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE-----VIKKFLDAQRIKNLTSYLEALHKKGLANSD-HTTLLL 438 (933)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH-----HHHHhcCHHHHHHHHHHHHHHHHcccccch-hHHHHH
Confidence 33333333 34567999999999877665433322 222222 22222344445566765443 346789
Q ss_pred HHHhc-CCHHHHHHHHhhCCCCChh-HHHHHHHHHHcCCcHHHHHHH--------------HHHcCCHHHHHHHHHHH
Q 043490 146 NMYSK-SCADEAWKVFENMEFRNVI-SWNSMIAAFRACKLEAQAIEL--------------FAKMKNEEEALFLFRQL 207 (589)
Q Consensus 146 ~~y~~-g~~~~A~~lf~~m~~~~~~-~~~~li~~~~~~g~~~~a~~~--------------~~~~g~~~~A~~~~~~m 207 (589)
++|.+ ++.+.-.+..+....-... -....+..+.+.+-.++|.-+ +...+++++|++.+..|
T Consensus 439 ncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 439 NCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcC
Confidence 99999 9998888877776621111 122333444444444444333 34556677777777665
No 297
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.70 E-value=33 Score=33.18 Aligned_cols=58 Identities=12% Similarity=0.236 Sum_probs=31.9
Q ss_pred HHHHHHHHhC---CCCCC-H-HHHHHHHHHHhccCc--HHHHHHHHHHhHHhcCCccCcchHHHHH
Q 043490 299 KEALQLFSNM---NVQPD-S-ATFVSLLSACSHAGL--VQEGNKVFHSMLENHGVVPQLDHYACMV 357 (589)
Q Consensus 299 ~~A~~~~~~m---~~~p~-~-~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li 357 (589)
+.+..+|+.+ |...+ . .....+|..+..... ...+.++++.+.+ .|+++...+|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHH
Confidence 3445555555 44442 2 344444444433222 4467778888744 48888877776553
No 298
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.59 E-value=17 Score=28.28 Aligned_cols=57 Identities=12% Similarity=0.182 Sum_probs=41.5
Q ss_pred HHhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043490 147 MYSK-SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTF 219 (589)
Q Consensus 147 ~y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 219 (589)
.+.. |++++|..+.+.+..||...|-++-. -+.|..++...-+.+|...| .|...+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce---------------~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCE---------------WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHH---------------HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3445 99999999999999999999988866 45666666666666676665 3444444
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.43 E-value=1.2 Score=26.63 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=10.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC
Q 043490 285 WNSILKAYALHGQAKEALQLFSNM 308 (589)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m 308 (589)
|..+...|...|++++|+..|++.
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHH
Confidence 344444444444444444444443
No 300
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.27 E-value=3.5 Score=38.74 Aligned_cols=60 Identities=10% Similarity=-0.024 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 384 IWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 384 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
+++....+|..+|.+.+|.++.++++.++|-+...+..|+..++..|+--++.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344556789999999999999999999999999999999999999999888888888775
No 301
>PRK11619 lytic murein transglycosylase; Provisional
Probab=84.11 E-value=69 Score=34.94 Aligned_cols=95 Identities=11% Similarity=-0.107 Sum_probs=57.4
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC---CCChhHHHHHHHHhhhcCChH
Q 043490 357 VDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLE---PGDSLGFVQMSNIYCLSGSFN 433 (589)
Q Consensus 357 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 433 (589)
+..+...|+..+|...+..+-...+......+.......|..+.+..........+ -.-+..|...+..+++.-.++
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 44566778888888877766223455555666666677888888887765543321 012345666777777666666
Q ss_pred HHHHHHHHHhcCCCccCC
Q 043490 434 KARLIRKEMKGSRVRKYP 451 (589)
Q Consensus 434 ~a~~~~~~m~~~~~~~~~ 451 (589)
.+.-.--...+.+..|..
T Consensus 494 ~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 494 QSYAMAIARQESAWNPKA 511 (644)
T ss_pred HHHHHHHHHHhcCCCCCC
Confidence 655433333466665543
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.83 E-value=8.3 Score=34.07 Aligned_cols=57 Identities=7% Similarity=0.163 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043490 252 VIANALIHAYARCGSISLSKQVFDKMTYHD------LVSWNSILKAYALHGQAKEALQLFSNM 308 (589)
Q Consensus 252 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m 308 (589)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......|++..+.....+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 456677888888888888888888876432 235566677777777777777776666
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.38 E-value=25 Score=29.76 Aligned_cols=69 Identities=9% Similarity=-0.003 Sum_probs=45.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-cchHHHHHHHH
Q 043490 12 FHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRN-VVSWTALISGY 83 (589)
Q Consensus 12 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~ 83 (589)
+..-....+++++..++..+.-.-| .....-.--.-.+...|++++|.++|+++.+.. ...|..-+.++
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrvLrP---~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~ 86 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRVLRP---NLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL 86 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCC---CccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence 3444468899999999988865533 333333334455678999999999999998643 22444333333
No 304
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.25 E-value=65 Score=33.23 Aligned_cols=168 Identities=9% Similarity=0.083 Sum_probs=74.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhc
Q 043490 250 DTVIANALIHAYARCGSISLSKQVFDKMT--YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDSATFVSLLSACSH 326 (589)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~ 326 (589)
|....-++++.++..-...-.+.+-.+|. ..+-..+-.++..|..+ ..++-..+++++ ...-|.+.+..-+..+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yE 143 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYE 143 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 33444445555555544444444444444 23344555555555555 344455555544 333344444433333333
Q ss_pred cCcHHHHHHHHHHhHHhcCCccC------cchHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcC
Q 043490 327 AGLVQEGNKVFHSMLENHGVVPQ------LDHYACMVDLLGRVGRILEAEKLIREM----PMEPDSVIWSVLLGSCRKHG 396 (589)
Q Consensus 327 ~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g 396 (589)
.++.+.+..+|..+..+ +.|. .++|..|+... ..+.+..+.+..+. +...-.+.+.-+-.-|....
T Consensus 144 kik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 144 KIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 35555555555554332 1221 11233333211 12333333333333 22222333444444555566
Q ss_pred CHHHHHHHHHHHhhcCCCChhHHHHH
Q 043490 397 ETRLAELAATKLKQLEPGDSLGFVQM 422 (589)
Q Consensus 397 ~~~~a~~~~~~~~~~~p~~~~~~~~l 422 (589)
++.+|++++..+++.+..|..+-..+
T Consensus 220 N~~eai~Ilk~il~~d~k~~~ar~~~ 245 (711)
T COG1747 220 NWTEAIRILKHILEHDEKDVWARKEI 245 (711)
T ss_pred CHHHHHHHHHHHhhhcchhhhHHHHH
Confidence 66666666666655554444333333
No 305
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.09 E-value=3 Score=40.01 Aligned_cols=111 Identities=12% Similarity=0.075 Sum_probs=78.8
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCC
Q 043490 321 LSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PME-PDSVIWSVLLGSCRKHGE 397 (589)
Q Consensus 321 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~ 397 (589)
.+-|.++|.+++|...|...+ .+.| +..++..-..+|.+..++..|+.-.... .+. .-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 356889999999999998654 5567 8888888899999999998877755544 211 114456666666666788
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHH
Q 043490 398 TRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLI 438 (589)
Q Consensus 398 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 438 (589)
.++|.+-++.+++++|.+.. |=..|++.....++.-+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHH
Confidence 99999999999999997543 33444444444444433
No 306
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.86 E-value=13 Score=38.72 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=57.3
Q ss_pred Hhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043490 148 YSK-SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKAC 226 (589)
Q Consensus 148 y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 226 (589)
..+ |+++.|.++..+. .+..-|..|..+. .+.|++..|.+.|..... |.+|+-.+
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~a-------------l~~~~l~lA~EC~~~a~d---------~~~LlLl~ 702 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAA-------------LSAGELPLASECFLRARD---------LGSLLLLY 702 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHH-------------hhcccchhHHHHHHhhcc---------hhhhhhhh
Confidence 345 7777777665443 3456677777777 555666666555554332 44555566
Q ss_pred hCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 043490 227 AGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKM 277 (589)
Q Consensus 227 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 277 (589)
...|+.+....+-....+.| ..| .-..+|...|+++++.+++.+-
T Consensus 703 t~~g~~~~l~~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 703 TSSGNAEGLAVLASLAKKQG-KNN-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhcCChhHHHHHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 66666665555555555555 222 2223455567777666666543
No 307
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.80 E-value=14 Score=28.71 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHhCCCCCCChhHHHHHH--HHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 043490 20 NIKQAMQLHEHMINNFPNEPQDLFVTNHLI--NMYAKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHGNAEECFRLFC 97 (589)
Q Consensus 20 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 97 (589)
.-++|..+-+++... ++..-.-.|| ..+...|++++|..+.+.++-||...|-+|-.. +.|--+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~-----~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLK-----GESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHH
Confidence 467777777777654 2212223333 456788999999999999999999999988663 5566666666666
Q ss_pred HHHhccCCCceeHH
Q 043490 98 SLLQYFFPNEFSLA 111 (589)
Q Consensus 98 ~m~~~~~p~~~t~~ 111 (589)
+|..+..|...+|.
T Consensus 93 rla~sg~p~lq~Fa 106 (115)
T TIGR02508 93 RLAASGDPRLQTFV 106 (115)
T ss_pred HHHhCCCHHHHHHH
Confidence 66665555444443
No 308
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.32 E-value=7.7 Score=37.34 Aligned_cols=84 Identities=19% Similarity=0.240 Sum_probs=60.9
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhc---
Q 043490 289 LKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRV--- 363 (589)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--- 363 (589)
..-|.+.|.+++|++.|.+- .+.| |.+++..-..+|.+...+..|..-....+.- -...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHHHH
Confidence 45689999999999999998 8888 9999999999999999988887665554321 12345566655
Q ss_pred ----CCHHHHHHHHHhC-CCCCC
Q 043490 364 ----GRILEAEKLIREM-PMEPD 381 (589)
Q Consensus 364 ----g~~~~A~~~~~~m-~~~p~ 381 (589)
|...+|.+-++.. .++|+
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcc
Confidence 4555555554444 56676
No 309
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.75 E-value=11 Score=29.00 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=35.9
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 043490 375 EMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQM 422 (589)
Q Consensus 375 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 422 (589)
.+.+-|++.+..+.+.||++.+++..|.++++-+...-..+...|-.+
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 346789999999999999999999999999998774322233344444
No 310
>PRK09687 putative lyase; Provisional
Probab=80.62 E-value=56 Score=31.40 Aligned_cols=61 Identities=8% Similarity=-0.023 Sum_probs=30.1
Q ss_pred cCcchHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 043490 348 PQLDHYACMVDLLGRVGRILEAEKL-IREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEP 413 (589)
Q Consensus 348 p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 413 (589)
++..+-...+.++++.|.. +|... ++.+. .++ .....+.++...|+. +|...+..+.+.+|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDK-RVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred CChHHHHHHHHHHHccCCh-hHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 3445555555666666553 33333 23322 122 223455566666653 46666666665555
No 311
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=80.57 E-value=36 Score=36.58 Aligned_cols=193 Identities=13% Similarity=0.139 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCC------Cc-HHHHHHHHHHHHhcCCH
Q 043490 198 EEALFLFRQLQREGMAPD---WCTFSIVLKACAGLVTERHASAVHSLIAKYGFE------DD-TVIANALIHAYARCGSI 267 (589)
Q Consensus 198 ~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~------~~-~~~~~~li~~~~~~g~~ 267 (589)
++--..+.+|...--.|+ ..+...++-.|-...+++...++.+.+.+..-. ++ .+.|.--++---+-|+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence 344556778876533343 456677777888888899888888888764200 01 11222223333455777
Q ss_pred HHHHHHHhhcC------CCChh-----HHHHH--HHHHHHcCCHHHHHHHHHhC-CCCCCHHH---HHHHHHHHhccCcH
Q 043490 268 SLSKQVFDKMT------YHDLV-----SWNSI--LKAYALHGQAKEALQLFSNM-NVQPDSAT---FVSLLSACSHAGLV 330 (589)
Q Consensus 268 ~~A~~~~~~~~------~~~~~-----~~~~l--i~~~~~~g~~~~A~~~~~~m-~~~p~~~t---~~~ll~a~~~~g~~ 330 (589)
++|+.+.-.+. .||.. .|--| -+.|-..+..+.|.+.|++. .++|+..+ +..|+.+-.+ .+
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~--~F 337 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGE--HF 337 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhh--hc
Confidence 88877766554 24442 23322 23466667788899999999 88887653 4445544322 12
Q ss_pred HHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 043490 331 QEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQ 410 (589)
Q Consensus 331 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 410 (589)
+...++ +.+ |+ .|-..++|.|.+++..+.++-. ..+.+-.-..++.+|.++.+.|.+
T Consensus 338 ens~El-q~I----gm--------kLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfK 394 (1226)
T KOG4279|consen 338 ENSLEL-QQI----GM--------KLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFK 394 (1226)
T ss_pred cchHHH-HHH----HH--------HHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhc
Confidence 222221 111 21 2345677888888777766532 334555667889999999999999
Q ss_pred cCCCC
Q 043490 411 LEPGD 415 (589)
Q Consensus 411 ~~p~~ 415 (589)
++|+.
T Consensus 395 Lk~P~ 399 (1226)
T KOG4279|consen 395 LKPPV 399 (1226)
T ss_pred cCCce
Confidence 98864
No 312
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.50 E-value=12 Score=29.28 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=33.4
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 043490 375 EMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMS 423 (589)
Q Consensus 375 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 423 (589)
.+.+-|++.+..+.+.||++.+++..|.++++-+...-.+....|-.++
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3467899999999999999999999999999988754332333555443
No 313
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.15 E-value=2.5 Score=23.61 Aligned_cols=24 Identities=8% Similarity=0.116 Sum_probs=17.5
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHH
Q 043490 417 LGFVQMSNIYCLSGSFNKARLIRK 440 (589)
Q Consensus 417 ~~~~~l~~~~~~~g~~~~a~~~~~ 440 (589)
.+...+..++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667778888888888877764
No 314
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.02 E-value=22 Score=37.17 Aligned_cols=149 Identities=13% Similarity=0.088 Sum_probs=104.4
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhH
Q 043490 263 RCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNMNVQPDSA-TFVSLLSACSHAGLVQEGNKVFHSML 341 (589)
Q Consensus 263 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~ 341 (589)
-.|+++.|..++..++++ .-+.++.-+-..|..++|+++- ||.. -|.. ..+.|+++.|.++..+.
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s------~D~d~rFel----al~lgrl~iA~~la~e~- 663 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS------TDPDQRFEL----ALKLGRLDIAFDLAVEA- 663 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC------CChhhhhhh----hhhcCcHHHHHHHHHhh-
Confidence 457888888877777632 3345566667788888887643 3332 2322 23568999998876544
Q ss_pred HhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHH
Q 043490 342 ENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQ 421 (589)
Q Consensus 342 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 421 (589)
-+..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+-+.-..+.....+.+..| .
T Consensus 664 ------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N-----~ 726 (794)
T KOG0276|consen 664 ------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN-----L 726 (794)
T ss_pred ------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc-----h
Confidence 245568899999999999999999998752 35677778888888877666666666655544 2
Q ss_pred HHHHhhhcCChHHHHHHHHHH
Q 043490 422 MSNIYCLSGSFNKARLIRKEM 442 (589)
Q Consensus 422 l~~~~~~~g~~~~a~~~~~~m 442 (589)
-..+|...|+++++.+++.+-
T Consensus 727 AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHcCCHHHHHHHHHhc
Confidence 345678899999999888654
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.77 E-value=3.1 Score=26.05 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=22.2
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 417 LGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 417 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888899999999999998887754
No 316
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.95 E-value=1.2 Score=37.80 Aligned_cols=84 Identities=15% Similarity=0.193 Sum_probs=49.2
Q ss_pred HHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHH
Q 043490 222 VLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEA 301 (589)
Q Consensus 222 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 301 (589)
++..+.+.+..+....+++.+.+.+-..+....+.++..|++.++.+...++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4455556666666777777777666556677777888888877666666666663322 2223344455555555555
Q ss_pred HHHHHhC
Q 043490 302 LQLFSNM 308 (589)
Q Consensus 302 ~~~~~~m 308 (589)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555544
No 317
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.94 E-value=15 Score=28.74 Aligned_cols=48 Identities=13% Similarity=0.354 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHH
Q 043490 309 NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVD 358 (589)
Q Consensus 309 ~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 358 (589)
.+.|++....+.|.||.+.+++..|.++|+.+..+.+ +....|..+++
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 7889999999999999999999999999998866544 33337777765
No 318
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=78.89 E-value=43 Score=29.13 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=78.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHhc-CCHHHHHHHHhhcC
Q 043490 201 LFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDD-TVIANALIHAYARC-GSISLSKQVFDKMT 278 (589)
Q Consensus 201 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~~~~~-g~~~~A~~~~~~~~ 278 (589)
++.++.+.+.+++|+...+..++..+.+.|....-.++ +..++-+| ..+...|++.-.+. .-..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45666777788999999999999999999886654444 44444444 33443333322211 11334555555543
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 043490 279 YHDLVSWNSILKAYALHGQAKEALQLFSNM-NV-QPDSATFVSLLSACSHAGLVQEGNKVFHSM 340 (589)
Q Consensus 279 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 340 (589)
..+..++..+...|++-+|+++.++. ++ .++. ..++.+..+.++...=..+|+-.
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~---~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPA---RKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCH---HHHHHHHHHcCCHHHHHHHHHHH
Confidence 24556777888999999999999886 32 2222 34556666666655544444444
No 319
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.82 E-value=2.5 Score=25.03 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=7.7
Q ss_pred HHHHHHHcCCHHHHHHHHHh
Q 043490 288 ILKAYALHGQAKEALQLFSN 307 (589)
Q Consensus 288 li~~~~~~g~~~~A~~~~~~ 307 (589)
+...|.+.|++++|++.|++
T Consensus 7 lg~~~~~~~~~~~A~~~~~~ 26 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEK 26 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHH
Confidence 33334444444444444433
No 320
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.19 E-value=60 Score=30.40 Aligned_cols=179 Identities=13% Similarity=0.151 Sum_probs=110.3
Q ss_pred cCCHHHHHHHHhhcCC----CC---hhHHHHHHHHHHHcCCHHHHHHHHHhC------CCC--CCHHHHHHHHHHHhccC
Q 043490 264 CGSISLSKQVFDKMTY----HD---LVSWNSILKAYALHGQAKEALQLFSNM------NVQ--PDSATFVSLLSACSHAG 328 (589)
Q Consensus 264 ~g~~~~A~~~~~~~~~----~~---~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~--p~~~t~~~ll~a~~~~g 328 (589)
..++++|+.-|++..+ +. -.+.-.||..+.+.|++++.++.|.+| .+. -+..+.++++.--+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3466777777776541 22 224456778888888888888888888 222 24557777877777666
Q ss_pred cHHHHHHHHHHhHHhc----CCccCcchHHHHHHHHhhcCCHHHHHHHHHhC--CC-----CCC-------HHHHHHHHH
Q 043490 329 LVQEGNKVFHSMLENH----GVVPQLDHYACMVDLLGRVGRILEAEKLIREM--PM-----EPD-------SVIWSVLLG 390 (589)
Q Consensus 329 ~~~~a~~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~-----~p~-------~~~~~~ll~ 390 (589)
+.+.-.++++.-.... +-.....+-..|...|...|.+.+..++++++ .. ..| ..+|..=+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 6666666554433211 11223334566777888888888777777766 00 111 356666778
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCC--CChhHHHHHH-----HHhhhcCChHHHHH-HHHHHh
Q 043490 391 SCRKHGETRLAELAATKLKQLEP--GDSLGFVQMS-----NIYCLSGSFNKARL-IRKEMK 443 (589)
Q Consensus 391 ~~~~~g~~~~a~~~~~~~~~~~p--~~~~~~~~l~-----~~~~~~g~~~~a~~-~~~~m~ 443 (589)
.|...++-..-..++++.+.... +.|.. ...+ .+..+.|.|++|.. +|+..+
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 88888888888889988876542 23322 2222 24567788888754 444443
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.34 E-value=4.7 Score=25.16 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=22.1
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHh
Q 043490 74 VSWTALISGYAQHGNAEECFRLFCSLLQ 101 (589)
Q Consensus 74 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 101 (589)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678888888888999999888888764
No 322
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.88 E-value=4.5 Score=22.55 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=11.1
Q ss_pred HHHHHHHHhcCChHHHHHHHh
Q 043490 46 NHLINMYAKFGYLDDARHLFD 66 (589)
Q Consensus 46 ~~li~~~~~~g~~~~A~~~f~ 66 (589)
..|...+...|++++|+.+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344455555555555555543
No 323
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=76.77 E-value=35 Score=26.96 Aligned_cols=87 Identities=15% Similarity=0.198 Sum_probs=54.7
Q ss_pred cCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043490 229 LVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNM 308 (589)
Q Consensus 229 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 308 (589)
....++|..|.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-++-. .+.|-.+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3456788888888877763 344444455566788899999955555555788888876644 5778888888888877
Q ss_pred --CCCCCHHHHH
Q 043490 309 --NVQPDSATFV 318 (589)
Q Consensus 309 --~~~p~~~t~~ 318 (589)
.-.|....|.
T Consensus 96 a~~g~~~~q~Fa 107 (116)
T PF09477_consen 96 ASSGSPELQAFA 107 (116)
T ss_dssp CT-SSHHHHHHH
T ss_pred HhCCCHHHHHHH
Confidence 3444444443
No 324
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=76.65 E-value=53 Score=28.98 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=37.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDW--CTFSIVLKACAGLVTERHASAVHSLIAKY 245 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 245 (589)
.+.|+.++|++.|.++......|.. ..+-.++..+...+++..+......+...
T Consensus 47 ~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 47 CKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 8888888888888888776544443 34566677777777877777776665443
No 325
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.44 E-value=5.6 Score=23.19 Aligned_cols=25 Identities=20% Similarity=0.034 Sum_probs=12.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCC
Q 043490 389 LGSCRKHGETRLAELAATKLKQLEP 413 (589)
Q Consensus 389 l~~~~~~g~~~~a~~~~~~~~~~~p 413 (589)
..++.+.|+.++|...++++++..|
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3344445555555555555555444
No 326
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.16 E-value=19 Score=27.79 Aligned_cols=63 Identities=14% Similarity=0.069 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 043490 196 NEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIH 259 (589)
Q Consensus 196 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 259 (589)
+.-++.+-++.+....+.|++....+.|+||-+.+|+..|.++++-++... ..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 334555566666667788999999999999999999999999998766332 224445655543
No 327
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.99 E-value=6.7 Score=26.59 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=25.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCChhH
Q 043490 387 VLLGSCRKHGETRLAELAATKLKQLEPGDSLG 418 (589)
Q Consensus 387 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 418 (589)
.+.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45668899999999999999999999987644
No 328
>PRK11619 lytic murein transglycosylase; Provisional
Probab=75.28 E-value=1.3e+02 Score=32.85 Aligned_cols=56 Identities=14% Similarity=0.054 Sum_probs=26.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043490 353 YACMVDLLGRVGRILEAEKLIREMPM--EPDSVIWSVLLGSCRKHGETRLAELAATKL 408 (589)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 408 (589)
...-+..-.+.++++.+...+..|+. .-...-.-=+..+....|+.+.|...|+++
T Consensus 315 ~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 315 LERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33334444456666666666666621 111111112334444456666666666665
No 329
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.27 E-value=7.1 Score=21.83 Aligned_cols=29 Identities=24% Similarity=0.087 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 043490 385 WSVLLGSCRKHGETRLAELAATKLKQLEP 413 (589)
Q Consensus 385 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 413 (589)
|..+...+...++++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44455555555666666666666555544
No 330
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=74.89 E-value=91 Score=30.82 Aligned_cols=147 Identities=11% Similarity=0.019 Sum_probs=77.4
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHh-cCCccCcc
Q 043490 279 YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQP-----DSATFVSLLSACSHAGLVQEGNKVFHSMLEN-HGVVPQLD 351 (589)
Q Consensus 279 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~ 351 (589)
.....+|..++..+.+.|+++.|...+.++ +..+ ++.....-....-..|+.++|...++...+. ..-..+..
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 344567888888888899998888888888 3221 2333444445555678888888888777652 11111111
Q ss_pred hHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 043490 352 HYACMVDLLGRVGRILEAEKL-IREMPMEPDSVIWSVLLGSCRKH------GETRLAELAATKLKQLEPGDSLGFVQMSN 424 (589)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 424 (589)
....+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+.+.++.|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111100 00000000 00000000122333333333333 77888899999999998877777777666
Q ss_pred Hhh
Q 043490 425 IYC 427 (589)
Q Consensus 425 ~~~ 427 (589)
.+.
T Consensus 301 ~~~ 303 (352)
T PF02259_consen 301 FND 303 (352)
T ss_pred HHH
Confidence 554
No 331
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=74.84 E-value=29 Score=31.10 Aligned_cols=72 Identities=14% Similarity=0.059 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHHhcCCHHHH
Q 043490 198 EEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKY---GFEDDTVIANALIHAYARCGSISLS 270 (589)
Q Consensus 198 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~A 270 (589)
++|++.|-++...+.--| ...-..|..+-...+.+++.+++-...+. +-.+|+.++.+|++.|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t-~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELET-AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 456666666666553333 33333344444456677777776666554 2255667777777777777776665
No 332
>PRK10941 hypothetical protein; Provisional
Probab=74.56 E-value=30 Score=32.94 Aligned_cols=62 Identities=18% Similarity=0.102 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 384 IWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 384 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
..+.|-.+|.+.++++.|.+..+.+..+.|+++.-+.--.-+|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 45667788999999999999999999999999988888899999999999999988877654
No 333
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.38 E-value=18 Score=32.68 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=24.3
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHh
Q 043490 321 LSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIRE 375 (589)
Q Consensus 321 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 375 (589)
++.+.+.+.+++|....+.-++. +| |...-..+++.|+-.|++++|..-++-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVka---kPtda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKA---KPTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhc---CCccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 34444445555555544443332 22 333444455555555555555544443
No 334
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=73.77 E-value=1.2e+02 Score=31.51 Aligned_cols=144 Identities=15% Similarity=0.218 Sum_probs=80.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSK 271 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 271 (589)
.++-...-...+..+|..-| -+...|..++..|... ..+.-..+++++.+..+ .|++...-|++-|-+ ++.+.+.
T Consensus 77 ~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yEk-ik~sk~a 151 (711)
T COG1747 77 GDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYEK-IKKSKAA 151 (711)
T ss_pred ccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHHH-hchhhHH
Confidence 66666666677777777644 4666777778777766 45566677777777653 355556666666666 7777777
Q ss_pred HHHhhcCCC------Ch---hHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 043490 272 QVFDKMTYH------DL---VSWNSILKAYALHGQAKEALQLFSNM----NVQPDSATFVSLLSACSHAGLVQEGNKVFH 338 (589)
Q Consensus 272 ~~~~~~~~~------~~---~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 338 (589)
..|.++..+ +. ..|.-++.-- ..+.+..+.+..+. |..--.+.+.-+-.-|....++++|.+++.
T Consensus 152 ~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk 229 (711)
T COG1747 152 EFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILK 229 (711)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHH
Confidence 777665411 11 1333333211 22333344444333 333333444444455555566666666665
Q ss_pred HhHH
Q 043490 339 SMLE 342 (589)
Q Consensus 339 ~~~~ 342 (589)
.+.+
T Consensus 230 ~il~ 233 (711)
T COG1747 230 HILE 233 (711)
T ss_pred HHhh
Confidence 5543
No 335
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.33 E-value=42 Score=32.24 Aligned_cols=94 Identities=15% Similarity=0.263 Sum_probs=66.1
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC-CCC--------hhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC
Q 043490 246 GFEDDTVIANALIHAYARCGSISLSKQVFDKMT-YHD--------LVSWNSILKAYALHGQAKEALQLFSNM---NVQPD 313 (589)
Q Consensus 246 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~ 313 (589)
|.+....+...++..-....+++.+...+-++. .|+ ..+|-.+ +..-++++++.++..= |+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccccc
Confidence 555666666777777777788888888877765 222 2233222 2334566888777665 89999
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 043490 314 SATFVSLLSACSHAGLVQEGNKVFHSMLEN 343 (589)
Q Consensus 314 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 343 (589)
..++..+++.+.+.+++.+|.++.-.|+..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999998888877666543
No 336
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=73.31 E-value=89 Score=29.96 Aligned_cols=18 Identities=6% Similarity=-0.084 Sum_probs=11.9
Q ss_pred HHhhhcCChHHHHHHHHH
Q 043490 424 NIYCLSGSFNKARLIRKE 441 (589)
Q Consensus 424 ~~~~~~g~~~~a~~~~~~ 441 (589)
..+.+.++|++|.+.++-
T Consensus 254 ~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHhhcCHHHHHHHHHH
Confidence 335567777777777763
No 337
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.86 E-value=19 Score=31.51 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=37.3
Q ss_pred CCCCC-HHHHHHHHHHHHHcC-----------CHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 377 PMEPD-SVIWSVLLGSCRKHG-----------ETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 377 ~~~p~-~~~~~~ll~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
.+.|+ ..++..+..++..++ .+++|...|+++...+|.| ..|..-+.+.. .|-++..++.+
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~~------kap~lh~e~~~ 135 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMAA------KAPELHMEIHK 135 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHH------THHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHH------hhHHHHHHHHH
Confidence 44565 345545555554432 2566777777888889965 56666555553 46677777766
Q ss_pred CCC
Q 043490 445 SRV 447 (589)
Q Consensus 445 ~~~ 447 (589)
++.
T Consensus 136 ~~~ 138 (186)
T PF06552_consen 136 QGL 138 (186)
T ss_dssp SSS
T ss_pred HHh
Confidence 655
No 338
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=72.84 E-value=9.9 Score=34.23 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=30.5
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHH
Q 043490 378 MEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEM 442 (589)
Q Consensus 378 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 442 (589)
+.|+ +.+||.|.--+...|+++.|.+.|+...+++|....+...-.-++.-.|++.-|.+=+...
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHH
Confidence 3444 4445544444555555555555555555555543333333333333445555444444333
No 339
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=72.72 E-value=6.8 Score=23.13 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=24.8
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 417 LGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 417 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
.+|..++..|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688899999999999999999998764
No 340
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.38 E-value=41 Score=30.07 Aligned_cols=58 Identities=12% Similarity=0.031 Sum_probs=35.6
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 043490 358 DLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGD 415 (589)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 415 (589)
.++.+.+.++.|++--.+. .+.|+ ......-..+|.+..+++.|+.-++++++.+|..
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 3445555555555544443 34443 2222333456777788889999999999988854
No 341
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=72.08 E-value=1.2e+02 Score=30.89 Aligned_cols=130 Identities=15% Similarity=0.168 Sum_probs=101.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC---C-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchH-HHH
Q 043490 282 LVSWNSILKAYALHGQAKEALQLFSNM---N-VQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHY-ACM 356 (589)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~A~~~~~~m---~-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l 356 (589)
...|...+..-.+..-.+.|..+|-+. + +.|+...+++++.-++ .|+..-|.++|+.-...+ ||...| +-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHH
Confidence 356777888877878889999999998 5 5678888999988766 588899999998765543 454444 455
Q ss_pred HHHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 043490 357 VDLLGRVGRILEAEKLIREM--PMEPD--SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGD 415 (589)
Q Consensus 357 i~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 415 (589)
+.-+.+.++-+.|..+|+.. .+..+ ..+|..+|.--..-|+...+..+-+++.+.-|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 66778899999999999966 33334 5789999998899999999998888888888743
No 342
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.96 E-value=4.5 Score=23.63 Aligned_cols=28 Identities=11% Similarity=0.231 Sum_probs=24.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 418 GFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 418 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
++..++.+|.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567888999999999999999998764
No 343
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.34 E-value=85 Score=28.92 Aligned_cols=54 Identities=17% Similarity=0.357 Sum_probs=32.1
Q ss_pred hhcCCHHHHHHHHHhC---CCCCCHHHHHH---HHH-H-HH-HcCCHHHHHHHHHHHhhcCCC
Q 043490 361 GRVGRILEAEKLIREM---PMEPDSVIWSV---LLG-S-CR-KHGETRLAELAATKLKQLEPG 414 (589)
Q Consensus 361 ~~~g~~~~A~~~~~~m---~~~p~~~~~~~---ll~-~-~~-~~g~~~~a~~~~~~~~~~~p~ 414 (589)
+..+++.+|.++|++. .+..+..-|.. ++. + |. ...+.-.+...+++..+++|.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 4567788888888776 22223333321 221 1 22 236677778888888888884
No 344
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.31 E-value=82 Score=31.56 Aligned_cols=64 Identities=20% Similarity=0.217 Sum_probs=51.5
Q ss_pred CHHHHHHH---HHHHHHcCCHHHHHHHHHHHhhcCCC-ChhHHHHHHHHhh-hcCChHHHHHHHHHHhc
Q 043490 381 DSVIWSVL---LGSCRKHGETRLAELAATKLKQLEPG-DSLGFVQMSNIYC-LSGSFNKARLIRKEMKG 444 (589)
Q Consensus 381 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 444 (589)
|...|.++ +..+.+.|-+..|.+..+-+..++|. |+..-..+++.|+ ++++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 45555554 46678889999999999999999998 8888888888886 77888888888877654
No 345
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=71.12 E-value=28 Score=31.14 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=51.2
Q ss_pred hcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC----CChhHHHHHHHHhhhcCChHH
Q 043490 362 RVGRILEAEKLIREMPMEP---DSVIWSVLLGSCRKHGETRLAELAATKLKQLEP----GDSLGFVQMSNIYCLSGSFNK 434 (589)
Q Consensus 362 ~~g~~~~A~~~~~~m~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~ 434 (589)
+.|+ ++|.+.|-.+.-.| ++..... +..|....|.++++.++-+++++.+ .|+..+.+|+.+|.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 4444 56777777662122 3444444 4445557789999999999887542 368889999999999999988
Q ss_pred HH
Q 043490 435 AR 436 (589)
Q Consensus 435 a~ 436 (589)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 75
No 346
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=71.00 E-value=1e+02 Score=29.59 Aligned_cols=60 Identities=8% Similarity=0.046 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCcCcHH---HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 043490 218 TFSIVLKACAGLVTER---HASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT 278 (589)
Q Consensus 218 t~~~ll~a~~~~~~~~---~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 278 (589)
++..+..++...+..+ .|..+.+.+... .+..+.++-.-+..+.+.++.+.+.+++.+|.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 4455555555554433 344444444322 22223334334444555566666666666654
No 347
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.47 E-value=1.7e+02 Score=32.03 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=83.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCC---chhHHHHHHHHHhc-CCHHH
Q 043490 80 ISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDA---HVYVANALINMYSK-SCADE 155 (589)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~---~~~~~~~li~~y~~-g~~~~ 155 (589)
|.-+.+.+.+++|+..-+.-... .+ -..++...|+-+.- |++++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--------------------------------~~~~~i~kv~~~yI~HLl~~~~y~~ 410 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--------------------------------EERFVIKKVGKTYIDHLLFEGKYDE 410 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--------------------------------ccccchHHHHHHHHHHHHhcchHHH
Confidence 55667788888888776554332 11 23345566666666 77877
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHH-
Q 043490 156 AWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERH- 234 (589)
Q Consensus 156 A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~- 234 (589)
|-++.-.|-..+..-|--.+..+ ...++......+ +.....+.+...|..+|..+.. .+...
T Consensus 411 Aas~~p~m~gn~~~eWe~~V~~f-------------~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F 473 (846)
T KOG2066|consen 411 AASLCPKMLGNNAAEWELWVFKF-------------AELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGF 473 (846)
T ss_pred HHhhhHHHhcchHHHHHHHHHHh-------------ccccccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHH
Confidence 77777777766666666666665 444443322111 1111111233344444444433 11111
Q ss_pred -------------HH----HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh
Q 043490 235 -------------AS----AVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLV 283 (589)
Q Consensus 235 -------------a~----~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 283 (589)
+. ++..+..+. ..+...-..|+..|...++++.|...+-....+++.
T Consensus 474 ~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 474 LELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred HHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 11 111111111 112233445999999999999999999988866553
No 348
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=69.51 E-value=29 Score=23.53 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=22.1
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 419 FVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 419 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
...++-++.+.|++++|.+..+.+.+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 456778899999999999999998764
No 349
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.11 E-value=38 Score=30.13 Aligned_cols=91 Identities=12% Similarity=0.049 Sum_probs=59.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcch--HHHHHHHHHhCCCh
Q 043490 12 FHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVS--WTALISGYAQHGNA 89 (589)
Q Consensus 12 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~ 89 (589)
.......++++.|..-+.+.+..-........+--.|.+.....|.+|+|.+.++....++-.+ -..--..+...|+-
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch
Confidence 4566677888888888887775400000112333456677777888888888888776654333 12223567888888
Q ss_pred hHHHHHHHHHHhc
Q 043490 90 EECFRLFCSLLQY 102 (589)
Q Consensus 90 ~~A~~~~~~m~~~ 102 (589)
++|..-|...+..
T Consensus 176 ~~Ar~ay~kAl~~ 188 (207)
T COG2976 176 QEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHHc
Confidence 8888888887765
No 350
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.07 E-value=7.3 Score=25.20 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=22.7
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 420 VQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 420 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
..|+.+|...|+.+.|+++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357889999999999999999887543
No 351
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=69.03 E-value=70 Score=26.99 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=57.7
Q ss_pred HHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCC-CCcHHH
Q 043490 175 IAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGF-EDDTVI 253 (589)
Q Consensus 175 i~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~~~~ 253 (589)
+..+.+.|++.+|+.+-.+.+++...+.+|+.+......++.. -+..+......-+.+.-..+++.+..-+- ..+..+
T Consensus 4 L~N~l~~~~y~~Al~LAl~L~~P~~ll~i~~~~~~~~~~~~~~-g~~~l~~~i~~L~~~~l~~LL~~ir~WNTNsr~~~v 82 (141)
T PF08625_consen 4 LSNLLRQKDYKEALRLALKLDHPFRLLKILKDLLETEEDEDSI-GSEELDEVIKKLDDEQLEKLLRFIRDWNTNSRTSHV 82 (141)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCcHHHHHHHHHHHhcccccccc-hHHHHHHHHHhcCHHHHHHHHHHHHHhhcccccHHH
Confidence 3456788999999999999999999999999998543344433 23333444444455555666666665542 223344
Q ss_pred HHHHHHHHHhcCCHH
Q 043490 254 ANALIHAYARCGSIS 268 (589)
Q Consensus 254 ~~~li~~~~~~g~~~ 268 (589)
...++....+.-..+
T Consensus 83 AQ~vL~~il~~~~~~ 97 (141)
T PF08625_consen 83 AQRVLNAILKSHPPE 97 (141)
T ss_pred HHHHHHHHHHhCCHH
Confidence 444555444444443
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.33 E-value=19 Score=32.61 Aligned_cols=64 Identities=19% Similarity=0.100 Sum_probs=50.6
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 043490 352 HYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGD 415 (589)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 415 (589)
+.+.-++.+.+.+.+.+|+...+.- .-+| |...-..++..++..|++++|..-++-+-++.|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3445577788889999998887655 4566 46677788899999999999999888888888854
No 353
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.29 E-value=73 Score=26.95 Aligned_cols=78 Identities=14% Similarity=0.234 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhc-CCHHHHHHHHhhCC---------CCChhHHHHHHHHHHcCCcHHHHHHHHHHcCC-HHHHHHHHHHH
Q 043490 139 YVANALINMYSK-SCADEAWKVFENME---------FRNVISWNSMIAAFRACKLEAQAIELFAKMKN-EEEALFLFRQL 207 (589)
Q Consensus 139 ~~~~~li~~y~~-g~~~~A~~lf~~m~---------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~-~~~A~~~~~~m 207 (589)
...|.+++-... +.+.....+++.+. ..+..+|++++.+. .+..- ---+..+|.-|
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~Sl-------------snSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSL-------------SNSSSAKLTSLTLFNFL 106 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHH-------------ccChHHHHHHHHHHHHH
Confidence 345566655555 66666666666553 13455677777766 44443 23456677777
Q ss_pred HHcCCCCCHHHHHHHHHHHhCc
Q 043490 208 QREGMAPDWCTFSIVLKACAGL 229 (589)
Q Consensus 208 ~~~g~~p~~~t~~~ll~a~~~~ 229 (589)
++.+.++++.-|..++.+|.+.
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcC
Confidence 7767777777777777777554
No 354
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=67.61 E-value=23 Score=35.82 Aligned_cols=86 Identities=17% Similarity=0.130 Sum_probs=36.2
Q ss_pred ccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHH
Q 043490 326 HAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PME-PDSVIWSVLLGSCRKHGETRLAEL 403 (589)
Q Consensus 326 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~ 403 (589)
+.|+++.+.+.+...-+ -+.....+-.+++....+.|++++|..+-..| +-+ -+..+...........|-++++.-
T Consensus 335 ~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 335 HLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 44555555544443311 12223334445555555555555555555444 111 122222222223333444455555
Q ss_pred HHHHHhhcCC
Q 043490 404 AATKLKQLEP 413 (589)
Q Consensus 404 ~~~~~~~~~p 413 (589)
.++++..++|
T Consensus 413 ~wk~~~~~~~ 422 (831)
T PRK15180 413 YWKRVLLLNP 422 (831)
T ss_pred HHHHHhccCC
Confidence 5555554443
No 355
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=67.46 E-value=62 Score=26.96 Aligned_cols=65 Identities=6% Similarity=-0.076 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHhh-cCCCCh-hHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 381 DSVIWSVLLGSCRKHG---ETRLAELAATKLKQ-LEPGDS-LGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 381 ~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
+..+--.+..++.+.. +..+++.+++.+.+ -.|... ....-|.-++.+.|+++.+.++.+.+.+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3333334444444443 45666777777775 333322 23335666777888888888887777653
No 356
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=66.77 E-value=88 Score=27.28 Aligned_cols=106 Identities=11% Similarity=0.119 Sum_probs=56.9
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHH
Q 043490 37 NEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLIS 116 (589)
Q Consensus 37 ~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a 116 (589)
+++++...+..+++.+.+.|++.....++..=.-+|...-...+-.+.. ....+.++=-+|.++
T Consensus 24 ~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR-------------- 87 (167)
T PF07035_consen 24 NIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR-------------- 87 (167)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH--------------
Confidence 4447777777777877777777777666654333443333333322221 122233332233221
Q ss_pred hchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 043490 117 CDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFENMEFRNVISWNSMIAAF 178 (589)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~ 178 (589)
.+ ..+..++..+.. |++-+|.+..+....-+......++.+-
T Consensus 88 ---------------L~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA 130 (167)
T PF07035_consen 88 ---------------LG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAA 130 (167)
T ss_pred ---------------hh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHH
Confidence 00 023445566666 8888888888776554444455556555
No 357
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=66.00 E-value=1.5e+02 Score=29.63 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=72.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHhhc--CCCC-----
Q 043490 355 CMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVL------------LGSCRKHGETRLAELAATKLKQL--EPGD----- 415 (589)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~--~p~~----- 415 (589)
.|...+-.+|++++|..++.+.++ .||+++ ++.|...+|+-.|.-+-+++... +.++
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~V----ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lK 211 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQV----ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELK 211 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcch----hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHH
Confidence 455667789999999999998753 334333 46688889999998888877542 2222
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCccCCceeeEEE
Q 043490 416 SLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVRKYPGLSWIEI 458 (589)
Q Consensus 416 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~ 458 (589)
...|..++......+.+=++-+.++..-+.|-.+...--|+.+
T Consensus 212 lkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~v 254 (439)
T KOG1498|consen 212 LKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEV 254 (439)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhh
Confidence 2358889999999999999999999988776554433446654
No 358
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=64.58 E-value=1.9e+02 Score=30.51 Aligned_cols=118 Identities=12% Similarity=0.051 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-----CCCCCHHHHHHHH
Q 043490 315 ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-----PMEPDSVIWSVLL 389 (589)
Q Consensus 315 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~ll 389 (589)
.+|...+.--...|+.+...-.|+.... ....-...|-..+.-....|+.+-|..++... +-.|......+.
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~- 374 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR- 374 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH-
Confidence 4566666655666666666666655432 11112223333333333446666666555544 112222222221
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHH
Q 043490 390 GSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKAR 436 (589)
Q Consensus 390 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 436 (589)
-+-..|+...|..+++.+.+.-|....+-..-++.-.+.|+.+.+.
T Consensus 375 -f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 -FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred -HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 2234467777777777776544654444445555566666666666
No 359
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.45 E-value=99 Score=27.08 Aligned_cols=115 Identities=15% Similarity=0.117 Sum_probs=54.3
Q ss_pred cCcHHHHHHHHHHHHHhCCCCcHHHHH-HHHHHHHhcCCHHHHHHHHhhcCCCC--hhHH---HHHH--HHHHHcCCHHH
Q 043490 229 LVTERHASAVHSLIAKYGFEDDTVIAN-ALIHAYARCGSISLSKQVFDKMTYHD--LVSW---NSIL--KAYALHGQAKE 300 (589)
Q Consensus 229 ~~~~~~a~~i~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~---~~li--~~~~~~g~~~~ 300 (589)
.+..++|..-|..+.+.|...-++.-. -........|+...|...|+++-..+ +... .-+= -.+..+|.+++
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence 334444444555554444322221111 12233445566666666666654211 1111 1111 12345667777
Q ss_pred HHHHHHhC--CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 043490 301 ALQLFSNM--NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLEN 343 (589)
Q Consensus 301 A~~~~~~m--~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 343 (589)
.....+.+ .-.|- ...-..|.-+-.+.|++..|.+.|..+..+
T Consensus 151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 76666666 22222 223334444556677777777777776543
No 360
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=64.34 E-value=21 Score=27.37 Aligned_cols=46 Identities=13% Similarity=0.035 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCC
Q 043490 402 ELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRV 447 (589)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 447 (589)
...++...+.+|+|...-..+...+...|++++|...+-.+.+++-
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 3455666778898988899999999999999999998888876543
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.40 E-value=16 Score=27.06 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=7.4
Q ss_pred cCcHHHHHHHHHHhHH
Q 043490 327 AGLVQEGNKVFHSMLE 342 (589)
Q Consensus 327 ~g~~~~a~~~~~~~~~ 342 (589)
....++|...|...++
T Consensus 19 ~~~~~~Al~~W~~aL~ 34 (80)
T PF10579_consen 19 QNETQQALQKWRKALE 34 (80)
T ss_pred cchHHHHHHHHHHHHh
Confidence 3444445555544443
No 362
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=63.27 E-value=52 Score=30.12 Aligned_cols=86 Identities=14% Similarity=0.102 Sum_probs=53.4
Q ss_pred hhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHH-------HHHhhcC--CC----ChhH
Q 043490 361 GRVGRILEAEKLIREM-------PMEPD--SVIWSVLLGSCRKHGETRLAELAA-------TKLKQLE--PG----DSLG 418 (589)
Q Consensus 361 ~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~-------~~~~~~~--p~----~~~~ 418 (589)
.....+++|.+.+.-+ +.+|. ...+.-+...|+..|+.+....++ ++..+.+ |. ....
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 3344555555544433 33444 445555666777778755544444 4444332 21 2345
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 419 FVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 419 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
...++..+.+.|+.++|.+.|.++...+
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 6678889999999999999999998654
No 363
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=61.83 E-value=1.3e+02 Score=31.62 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=14.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC
Q 043490 287 SILKAYALHGQAKEALQLFSNM 308 (589)
Q Consensus 287 ~li~~~~~~g~~~~A~~~~~~m 308 (589)
.++.-|.+.++.++|+.++..|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhC
Confidence 4555666666666666666666
No 364
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=60.25 E-value=85 Score=24.92 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=32.5
Q ss_pred HHhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043490 147 MYSK-SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREG 211 (589)
Q Consensus 147 ~y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g 211 (589)
.+.+ |++++|...=.....||...|-+|-. -+.|..+++...+.++...|
T Consensus 49 sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a---------------~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 49 SLMNRGDYQEALLLPQCHCYPDLEPWAALCA---------------WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHTT-HHHHHHHHTTS--GGGHHHHHHHH---------------HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHhhHHHHHHHHhcccCCCccHHHHHHHHH---------------HhhccHHHHHHHHHHHHhCC
Confidence 3445 99999955555566789999988765 56777777777777776554
No 365
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.46 E-value=5.6 Score=38.33 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHH
Q 043490 364 GRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKE 441 (589)
Q Consensus 364 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 441 (589)
|.+++|++.|... ...|. ...|.--.+++.+.++...|++=+...++++|+....|-.-..+....|+|++|.+.+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 4455555555444 33332 333333344445555555555555555555555544454444444555555555555555
Q ss_pred HhcCCCc
Q 043490 442 MKGSRVR 448 (589)
Q Consensus 442 m~~~~~~ 448 (589)
..+.++.
T Consensus 208 a~kld~d 214 (377)
T KOG1308|consen 208 ACKLDYD 214 (377)
T ss_pred HHhcccc
Confidence 5544443
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.16 E-value=37 Score=25.18 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhCcCcHHHHHHH
Q 043490 184 EAQAIELFAKMKNEEEALFLFRQLQREGMAPDW--CTFSIVLKACAGLVTERHASAV 238 (589)
Q Consensus 184 ~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i 238 (589)
+++.+.+| ...+.++|+..|....+.-..|.. .++..++.+++..|+.+.+.++
T Consensus 10 ie~GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 10 IEKGLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555 556778888888887765333322 3566777777777776665544
No 367
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.20 E-value=34 Score=30.63 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=26.6
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 043490 70 KRNVVSWTALISGYAQHGNAEECFRLFCSLLQY 102 (589)
Q Consensus 70 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 102 (589)
.|+...|..++.++...|+.++|.++..++..-
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 377788888888888888888888888877764
No 368
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=57.52 E-value=23 Score=20.25 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 043490 396 GETRLAELAATKLKQLEPGDSLGFVQMSN 424 (589)
Q Consensus 396 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 424 (589)
|+.+.+..+|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677888888888877777766665544
No 369
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=54.49 E-value=40 Score=31.06 Aligned_cols=57 Identities=12% Similarity=0.000 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHH
Q 043490 386 SVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEM 442 (589)
Q Consensus 386 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 442 (589)
+.=+-.+.+.++++.+..--++.+++.|+.......|.........+++|+..+.+.
T Consensus 48 tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 48 TNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 333444444455555555555555555544444445555555555555555555444
No 370
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.15 E-value=2e+02 Score=27.19 Aligned_cols=245 Identities=14% Similarity=0.183 Sum_probs=144.7
Q ss_pred hcCCCchhHHHHHHHHHh-c-CCHHHHHHHHhhCCC----CChhH---HHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHH
Q 043490 132 FSLDAHVYVANALINMYS-K-SCADEAWKVFENMEF----RNVIS---WNSMIAAFRACKLEAQAIELFAKMKNEEEALF 202 (589)
Q Consensus 132 ~g~~~~~~~~~~li~~y~-~-g~~~~A~~lf~~m~~----~~~~~---~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~ 202 (589)
.+-+||+..-|..-+.-+ + ...++|..-|.+..+ +...- ...+|..+ .+.|++++.++
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~-------------f~l~~~~eMm~ 86 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKIN-------------FRLGNYKEMME 86 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHH-------------hccccHHHHHH
Confidence 345677766554433222 2 578899999987753 22222 23456666 77788888888
Q ss_pred HHHHHHH---cCC--CCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh-----CCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 043490 203 LFRQLQR---EGM--APDWCTFSIVLKACAGLVTERHASAVHSLIAKY-----GFEDDTVIANALIHAYARCGSISLSKQ 272 (589)
Q Consensus 203 ~~~~m~~---~g~--~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~ 272 (589)
.|.+|.. ..+ .-+..+.++++.-.+.+.+.+.-..+++.-++. +-..--.+-+.|...|...|++..-.+
T Consensus 87 ~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~K 166 (440)
T KOG1464|consen 87 RYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQK 166 (440)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHH
Confidence 7777743 112 234567788887777776666666665543321 111122344567888888898888888
Q ss_pred HHhhcCC--------CC-------hhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHh-----ccC
Q 043490 273 VFDKMTY--------HD-------LVSWNSILKAYALHGQAKEALQLFSNM----NVQPDSATFVSLLSACS-----HAG 328 (589)
Q Consensus 273 ~~~~~~~--------~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~t~~~ll~a~~-----~~g 328 (589)
++.++.. .| ...|..=|..|....+-.+-..+|++. ..-|.+.. ..+|+-|. +.|
T Consensus 167 IlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg 245 (440)
T KOG1464|consen 167 ILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREG 245 (440)
T ss_pred HHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccc
Confidence 8877641 11 246777788888888888888888887 33344433 34556564 457
Q ss_pred cHHHHHHHHHHhHHhcCCc--cCc---chHHHHHHHHhhcCCHHHHHHHHH--hC-CC--CCCHHHHHHHHHHHHHc
Q 043490 329 LVQEGNKVFHSMLENHGVV--PQL---DHYACMVDLLGRVGRILEAEKLIR--EM-PM--EPDSVIWSVLLGSCRKH 395 (589)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~--p~~---~~~~~li~~~~~~g~~~~A~~~~~--~m-~~--~p~~~~~~~ll~~~~~~ 395 (589)
.+++|.--|-+.-+.+.-. |.. --|-.|..++.+.|-- -|+ +. |. .|.....+.|+.+|..+
T Consensus 246 ~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 246 EFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred hHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhcc
Confidence 7877754433333444222 221 1355666677666520 011 11 33 35566778889888765
No 371
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.61 E-value=1.1e+02 Score=25.13 Aligned_cols=42 Identities=17% Similarity=0.057 Sum_probs=33.8
Q ss_pred HHHHHHHHHhh--cCCCChhHHHHHHHHhhhcCChHHHHHHHHH
Q 043490 400 LAELAATKLKQ--LEPGDSLGFVQMSNIYCLSGSFNKARLIRKE 441 (589)
Q Consensus 400 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 441 (589)
.+..+|+.|.. ++...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78888888876 4455677789999999999999999999874
No 372
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.91 E-value=51 Score=34.52 Aligned_cols=96 Identities=17% Similarity=0.079 Sum_probs=51.1
Q ss_pred cCcHHHHHHHHHHhHHhcCCcc--CcchHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHH
Q 043490 327 AGLVQEGNKVFHSMLENHGVVP--QLDHYACMVDLLGRVGRILEAEKLIREM-PM-EPDSVIWSVLLGSCRKHGETRLAE 402 (589)
Q Consensus 327 ~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~ 402 (589)
.|+...|.+.+.... ...| .......|...+.+.|...+|-.++.+. .+ ...+-++-.+..++....+.+.|+
T Consensus 620 ~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 355555555554432 2233 1223334455555556666666655443 21 122445555666666666777777
Q ss_pred HHHHHHhhcCCCChhHHHHHHHH
Q 043490 403 LAATKLKQLEPGDSLGFVQMSNI 425 (589)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~~l~~~ 425 (589)
+.|+++.+.+|.++..-+.|..+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHH
Confidence 77777777776666665555443
No 373
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=51.83 E-value=2.2e+02 Score=27.13 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=53.6
Q ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHH
Q 043490 220 SIVLKACAGLVTERHASAVHSLIAKY--GFEDDTVIANALIHAYARCGSISLSKQVFDKMT----YHDLVSWNSILKAYA 293 (589)
Q Consensus 220 ~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~ 293 (589)
..-|.|++..+++.++....-+--+. .++| .+...-|-.|.|.|+...+.++-..-. ..+...|.+++.-|.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 34477888888888876543332222 2344 344555667899998877766654332 345556777766665
Q ss_pred H-----cCCHHHHHHHHH
Q 043490 294 L-----HGQAKEALQLFS 306 (589)
Q Consensus 294 ~-----~g~~~~A~~~~~ 306 (589)
. .|.+++|.++..
T Consensus 165 l~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHHhccccHHHHHHHHh
Confidence 4 588888888773
No 374
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=51.61 E-value=61 Score=28.50 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=16.1
Q ss_pred HHHHHHHHhC-CCCCCH-HHHHHHHHHHhcc
Q 043490 299 KEALQLFSNM-NVQPDS-ATFVSLLSACSHA 327 (589)
Q Consensus 299 ~~A~~~~~~m-~~~p~~-~t~~~ll~a~~~~ 327 (589)
++|+.-|++. .+.|+. .++..+..++...
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 3445555555 677765 5676676666543
No 375
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=51.04 E-value=83 Score=26.53 Aligned_cols=63 Identities=11% Similarity=-0.029 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCC
Q 043490 366 ILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGS 431 (589)
Q Consensus 366 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 431 (589)
-+.|.++.+-|| .....-.........|++..|.++.+.+...+|+|...-...+++|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 456777777775 334444555667789999999999999999999998888888887766554
No 376
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=50.69 E-value=2.3e+02 Score=26.90 Aligned_cols=81 Identities=17% Similarity=0.243 Sum_probs=47.3
Q ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHH-HHHHHhh
Q 043490 349 QLDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFV-QMSNIYC 427 (589)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~ 427 (589)
++.....+...|.+.|++.+|+..|-... .|+...+..++.-....| .|.+...|. ..+--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~---------------~~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKG---------------YPSEADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHT---------------SS--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhc---------------CCcchhHHHHHHHHHHH
Confidence 55667778888999999999988776542 223333222333222222 333334433 3445577
Q ss_pred hcCChHHHHHHHHHHhcC
Q 043490 428 LSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 428 ~~g~~~~a~~~~~~m~~~ 445 (589)
-.|+...|...++...++
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 788999999988877654
No 377
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.58 E-value=48 Score=29.65 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 043490 379 EPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEP 413 (589)
Q Consensus 379 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 413 (589)
.|+..++..++.++...|+.++|.+..+++...-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44555555555555555555555555555555444
No 378
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=49.77 E-value=35 Score=31.18 Aligned_cols=57 Identities=26% Similarity=0.376 Sum_probs=41.8
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 043490 359 LLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGD 415 (589)
Q Consensus 359 ~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 415 (589)
+..+.|+.+.|.+++.+. ...|+ ...|-.+...--+.|+.+.|.+.+++.++++|+|
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345567777777777776 44554 7777777777788888888888888888887764
No 379
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=49.52 E-value=2.6e+02 Score=27.23 Aligned_cols=85 Identities=15% Similarity=-0.001 Sum_probs=57.6
Q ss_pred CcHHHHHHHHHHhHHhcCC---ccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043490 328 GLVQEGNKVFHSMLENHGV---VPQLDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELA 404 (589)
Q Consensus 328 g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 404 (589)
+-.++|.+.|........- ..++.....+.....+.|..++-..+++...-.++...-..++.+.+...+.+...++
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 3467888888887653111 3345566677777788888766666666554456788888999999999999999999
Q ss_pred HHHHhhcC
Q 043490 405 ATKLKQLE 412 (589)
Q Consensus 405 ~~~~~~~~ 412 (589)
++.+..-+
T Consensus 224 l~~~l~~~ 231 (324)
T PF11838_consen 224 LDLLLSND 231 (324)
T ss_dssp HHHHHCTS
T ss_pred HHHHcCCc
Confidence 99988843
No 380
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=49.51 E-value=44 Score=31.75 Aligned_cols=59 Identities=12% Similarity=0.168 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 043490 44 VTNHLINMYAKFGYLDDARHLFDEMPK---RNVVSWTALISGYAQHGNAEECFRLFCSLLQY 102 (589)
Q Consensus 44 ~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 102 (589)
+.+...+.|..+|.+.+|..+-++... -+...|-.|++.++..|+--+|.+-|+++.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 345566788889999999988887764 35667888999999999988888888888753
No 381
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.10 E-value=3.7e+02 Score=28.88 Aligned_cols=44 Identities=16% Similarity=0.045 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHH----H-HHhcCCHHHHHHHHhhcC
Q 043490 232 ERHASAVHSLIAKYGFEDDTVIANALIH----A-YARCGSISLSKQVFDKMT 278 (589)
Q Consensus 232 ~~~a~~i~~~~~~~g~~~~~~~~~~li~----~-~~~~g~~~~A~~~~~~~~ 278 (589)
...+.++++...+.| +......+.. + +....+.+.|...|..+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa 276 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAA 276 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHH
Confidence 566778888877776 2222222222 2 335567778877777653
No 382
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=49.09 E-value=2e+02 Score=27.43 Aligned_cols=83 Identities=13% Similarity=0.058 Sum_probs=56.2
Q ss_pred HHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-----c
Q 043490 192 AKMKNEEEALFLFRQLQRE--GMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYAR-----C 264 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~-----~ 264 (589)
+.++++.+++...-+--+. .++|...- .-|--|.+.+....+.++-..-.+..-.-+..-|.+++..|.. .
T Consensus 94 AEmnrWreVLsWvlqyYq~pEklPpkIle--LCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPL 171 (309)
T PF07163_consen 94 AEMNRWREVLSWVLQYYQVPEKLPPKILE--LCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPL 171 (309)
T ss_pred HHHhhHHHHHHHHHHHhcCcccCCHHHHH--HHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhcc
Confidence 8999999988766554332 24444443 3444577888888888887766654333344458887777765 5
Q ss_pred CCHHHHHHHHhh
Q 043490 265 GSISLSKQVFDK 276 (589)
Q Consensus 265 g~~~~A~~~~~~ 276 (589)
|.+++|+++...
T Consensus 172 G~~~eAeelv~g 183 (309)
T PF07163_consen 172 GHFSEAEELVVG 183 (309)
T ss_pred ccHHHHHHHHhc
Confidence 999999998743
No 383
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=48.02 E-value=4e+02 Score=29.00 Aligned_cols=82 Identities=11% Similarity=0.157 Sum_probs=44.9
Q ss_pred CCHHHHHHHHhhCCC-------CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCC
Q 043490 151 SCADEAWKVFENMEF-------RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREG---------MAP 214 (589)
Q Consensus 151 g~~~~A~~lf~~m~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g---------~~p 214 (589)
++...|.+.++.+.. +-+...-.++.+.. ..+.+..+++++..+++.... -.|
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l-----------~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~ 221 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL-----------HLRRGSPDDVLELLQRAIAQARSLQLDPSVHIP 221 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH-----------HhcCCCchhHHHHHHHHHHHHhhcccCCCCCcH
Confidence 577777777766542 22223333333331 144565666777776663321 134
Q ss_pred CHHHHHHHHHHHh--CcCcHHHHHHHHHHHH
Q 043490 215 DWCTFSIVLKACA--GLVTERHASAVHSLIA 243 (589)
Q Consensus 215 ~~~t~~~ll~a~~--~~~~~~~a~~i~~~~~ 243 (589)
-..+|..++..++ ..|+++.+.+.++.+.
T Consensus 222 qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 222 QLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5567777777764 5677667666655543
No 384
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=47.86 E-value=3e+02 Score=27.56 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=52.7
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCcc--CcchHHHHHHHHh-hcCCHHHHHHHHHhCCC---------CCCHHHHHHH
Q 043490 321 LSACSHAGLVQEGNKVFHSMLENHGVVP--QLDHYACMVDLLG-RVGRILEAEKLIREMPM---------EPDSVIWSVL 388 (589)
Q Consensus 321 l~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~---------~p~~~~~~~l 388 (589)
+..+.+.|-+..|.++.+-+. .+.| |+.....+|+.|+ ++++++--+++.+.... -|+ ..|+..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~a 185 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIA 185 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHH
Confidence 445666777777777766654 4445 3444445566664 56666666666665421 122 233333
Q ss_pred HHHHHHcCCH---------------HHHHHHHHHHhhcCCCChhHHHHHHH
Q 043490 389 LGSCRKHGET---------------RLAELAATKLKQLEPGDSLGFVQMSN 424 (589)
Q Consensus 389 l~~~~~~g~~---------------~~a~~~~~~~~~~~p~~~~~~~~l~~ 424 (589)
+.-+. .++. +.|...+.+++..-| .+...|.+
T Consensus 186 LA~~~-l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP---~vl~~Ll~ 232 (360)
T PF04910_consen 186 LAYFR-LEKEESSQSSAQSGRSENSESADEALQKAILRFP---WVLVPLLD 232 (360)
T ss_pred HHHHH-hcCccccccccccccccchhHHHHHHHHHHHHhH---HHHHHHHH
Confidence 33333 3333 778888888777766 44444443
No 385
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.82 E-value=26 Score=38.35 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=41.0
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 043490 359 LLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLE 412 (589)
Q Consensus 359 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 412 (589)
....+|+++.|++.-.+.+ |..+|..|......+|+.+.|+..+++....+
T Consensus 652 LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfe 702 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNFE 702 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 3457888999888887765 67889999999999999999988888776543
No 386
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.75 E-value=3.1e+02 Score=29.03 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=35.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCC-ChhHHHHHHHHhh-hcCChHHHHHHHHHHh
Q 043490 390 GSCRKHGETRLAELAATKLKQLEPG-DSLGFVQMSNIYC-LSGSFNKARLIRKEMK 443 (589)
Q Consensus 390 ~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 443 (589)
....+.|-+..|.+..+.+..++|. ||.....+++.|+ ++.+++=-+++++...
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445667777777777777777775 6666667777665 5566666666666553
No 387
>PF13934 ELYS: Nuclear pore complex assembly
Probab=47.16 E-value=2.4e+02 Score=26.10 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=16.1
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 043490 361 GRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRK 394 (589)
Q Consensus 361 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 394 (589)
..++.+.||..+-+...-.-....|..++..|..
T Consensus 151 La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 4445666666555554211113355555555543
No 388
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=46.89 E-value=1.2e+02 Score=24.97 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=32.8
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 043490 375 EMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLE 412 (589)
Q Consensus 375 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 412 (589)
.+.+-|++.+...-+.||++-+|+..|.++++-+...-
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 34678999999999999999999999999999887533
No 389
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=46.77 E-value=1.3e+02 Score=22.93 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=28.5
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHH
Q 043490 263 RCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEAL 302 (589)
Q Consensus 263 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 302 (589)
+.|+.+.|.++++.++ +....|..++.++-..|+..-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577778888888877 77777777788777777665543
No 390
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=46.75 E-value=15 Score=37.17 Aligned_cols=94 Identities=15% Similarity=0.100 Sum_probs=68.3
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHH-HHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCC
Q 043490 321 LSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACM-VDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGE 397 (589)
Q Consensus 321 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~ 397 (589)
++.....+.++.|..++.+++ .+.|+...|-+. ..++.+.+++..|+.=+.+. ...|+ ...|-.=..+|.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 445566788999999998886 457865554333 37788888888888766555 55565 4445555567777888
Q ss_pred HHHHHHHHHHHhhcCCCChh
Q 043490 398 TRLAELAATKLKQLEPGDSL 417 (589)
Q Consensus 398 ~~~a~~~~~~~~~~~p~~~~ 417 (589)
+.+|...|+....+.|+++.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHH
Confidence 99999999999999997654
No 391
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=46.35 E-value=2.8e+02 Score=26.66 Aligned_cols=64 Identities=6% Similarity=-0.070 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-C-CCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCC
Q 043490 380 PDSVIWSVLLGSCRKHGETRLAELAATKLKQL-E-PGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRV 447 (589)
Q Consensus 380 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 447 (589)
++..+...++..++..+++..-.++++..... . ..|...|..+++.-.+.|+. .+.+++...|-
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~----~~~~kiI~~Gh 265 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQ----EVMRKIIDDGH 265 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCH----HHHHHHhhCCC
Confidence 44444444555555555555555555544433 2 23556666666666666664 33444555554
No 392
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.53 E-value=1.6e+02 Score=27.46 Aligned_cols=57 Identities=9% Similarity=0.002 Sum_probs=46.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 390 GSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 390 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
.++...|++-++++.-..++...|.|..+|..-+.+.+..=+.++|..=|....+..
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 445667888888888888999999999999998888888888888888888776644
No 393
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=44.62 E-value=1.7e+02 Score=30.66 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC--Ccc---hHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 043490 46 NHLINMYAKFGYLDDARHLFDEMPKR--NVV---SWTALISGYAQHGNAEECFRLFCSLLQY 102 (589)
Q Consensus 46 ~~li~~~~~~g~~~~A~~~f~~m~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 102 (589)
..|+.-|.+++++++|..++..|.=. ... +.+.+.+.+.+..--.+....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 46788999999999999999998621 122 3445556666665556666677777666
No 394
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.41 E-value=2.4e+02 Score=25.35 Aligned_cols=53 Identities=15% Similarity=0.073 Sum_probs=23.1
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043490 290 KAYALHGQAKEALQLFSNM-NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLE 342 (589)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 342 (589)
....+.|.+++|+.+++.. +-.-.......-...+...|+-++|+.-|....+
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHH
Confidence 3344455555555555443 1111111122223345555555555555555543
No 395
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=42.97 E-value=66 Score=20.80 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=17.3
Q ss_pred HHcCCHHHHHHHHHHHHHcC
Q 043490 192 AKMKNEEEALFLFRQLQREG 211 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g 211 (589)
...|+.+.|.+++++....|
T Consensus 10 ie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 10 IEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHcCChHHHHHHHHHHHHcC
Confidence 89999999999999988654
No 396
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=42.42 E-value=2.7e+02 Score=26.63 Aligned_cols=122 Identities=11% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCccCcc-------hHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHH
Q 043490 320 LLSACSHAGLVQEGNKVFHSMLENHGVVPQLD-------HYACMVDLLGRVGRILEAEKLIREM-------PMEPDSVIW 385 (589)
Q Consensus 320 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-------~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~ 385 (589)
+.+-..+.+++++|...+.++..+ |+..+.. +...+.+.|.+.|+...-.+++... .-.....+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~k-g~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGK-GVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcC-CCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Q ss_pred HHHHHHH-HHcCCHHHHHHHHHHHhhcCCCChhHHH------HHHHHhhhcCChHHHHHHHHHH
Q 043490 386 SVLLGSC-RKHGETRLAELAATKLKQLEPGDSLGFV------QMSNIYCLSGSFNKARLIRKEM 442 (589)
Q Consensus 386 ~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~------~l~~~~~~~g~~~~a~~~~~~m 442 (589)
.+|+.-+ .....++.-+.+....++.-...-..+. -++.++.+.|.+.+|..+...+
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
No 397
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=42.31 E-value=5.9e+02 Score=29.33 Aligned_cols=145 Identities=7% Similarity=-0.070 Sum_probs=61.2
Q ss_pred HhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH-HHHHHHHhHHhcCCccCcch
Q 043490 274 FDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNMNVQPDSATFVSLLSACSHAGLVQE-GNKVFHSMLENHGVVPQLDH 352 (589)
Q Consensus 274 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~g~~~~-a~~~~~~~~~~~~~~p~~~~ 352 (589)
...+..+|...-...+.++.+.+..+..... --.++...-.....++...+..+. +...+..+.+ .++..+
T Consensus 720 ~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~----l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~----D~d~~V 791 (897)
T PRK13800 720 AAALGDPDHRVRIEAVRALVSVDDVESVAGA----ATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG----DPDPLV 791 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHhcccCcHHHHHH----hcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc----CCCHHH
Confidence 3344455555444555555554433222111 123344444444444444443221 2223333322 244555
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhc
Q 043490 353 YACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLS 429 (589)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 429 (589)
-...+.++++.|..+.+...+..+-..+|..+-...+.++...+.. ++...+..+++ +| +..+-..-+.++.+.
T Consensus 792 R~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~-D~-~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 792 RAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVPALVEALT-DP-HLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHHHHHHHhc-CC-CHHHHHHHHHHHhcc
Confidence 5566666666665444322222221134544444555555555442 23333333332 22 334444444455443
No 398
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=41.58 E-value=2.4e+02 Score=25.98 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHH--HHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHH
Q 043490 283 VSWNSILKAYALHGQAKEALQLFSNM-NVQP---DSATFV--SLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACM 356 (589)
Q Consensus 283 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 356 (589)
.-.|.|+--|..+..+.+|-+.|..- ++.| |..++. .-|......|+.++|.+....+... -+..|...+--|
T Consensus 27 ~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~L 105 (228)
T KOG2659|consen 27 EDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHL 105 (228)
T ss_pred hhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHH
Confidence 34556665565555555666666555 5555 222332 3344556677777777766655221 222232222222
Q ss_pred H----HHHhhcCCHHHHHHHHHhC
Q 043490 357 V----DLLGRVGRILEAEKLIREM 376 (589)
Q Consensus 357 i----~~~~~~g~~~~A~~~~~~m 376 (589)
. --+.|.|..++|+++.+.=
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1 1235667777777776643
No 399
>PF13934 ELYS: Nuclear pore complex assembly
Probab=41.52 E-value=2.9e+02 Score=25.52 Aligned_cols=52 Identities=13% Similarity=0.025 Sum_probs=24.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043490 356 MVDLLGRVGRILEAEKLIREMPMEP-DSVIWSVLLGSCRKHGETRLAELAATKL 408 (589)
Q Consensus 356 li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 408 (589)
++..+.+.|+.+.|+.+++.++-.+ +......++.. ..++.+.+|....+..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 4555555566666666666552111 22222333333 4445566665554443
No 400
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=41.19 E-value=27 Score=28.88 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=25.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKAC 226 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 226 (589)
...|.-.+|..+|++|+..|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3447778899999999999999885 55666554
No 401
>PRK14700 recombination factor protein RarA; Provisional
Probab=40.81 E-value=3.5e+02 Score=26.21 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCc-----HHHHHHHHHHHH
Q 043490 169 ISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVT-----ERHASAVHSLIA 243 (589)
Q Consensus 169 ~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~i~~~~~ 243 (589)
..+-.+|+++.++ .+-.+++.|+-.+.+|++.|-.|....-..++.+.-..|. +..|...++...
T Consensus 124 d~HYd~iSAf~KS----------iRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~ 193 (300)
T PRK14700 124 KEFYEQLSAFHKS----------VRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYE 193 (300)
T ss_pred chhHHHHHHHHHH----------hhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 3344456666444 6778999999999999999988888877777777766663 334444555555
Q ss_pred HhCCC
Q 043490 244 KYGFE 248 (589)
Q Consensus 244 ~~g~~ 248 (589)
..|+|
T Consensus 194 ~iG~P 198 (300)
T PRK14700 194 KLGMP 198 (300)
T ss_pred HhCCh
Confidence 55543
No 402
>PHA02875 ankyrin repeat protein; Provisional
Probab=40.77 E-value=2.9e+02 Score=28.11 Aligned_cols=197 Identities=14% Similarity=0.116 Sum_probs=97.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHH--HHHHHHHHHHhcCCH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCT--FSIVLKACAGLVTERHASAVHSLIAKYGFEDDTV--IANALIHAYARCGSI 267 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~--~~~~li~~~~~~g~~ 267 (589)
++.|+.+-+ +.+.+.|..|+... -.+.+..++..|+.+.+ +.+.+.|..|+.. ...+.+...++.|+.
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 566766543 44445676665432 23445555667776644 4455566554432 122345566788999
Q ss_pred HHHHHHHhhcCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHh
Q 043490 268 SLSKQVFDKMTYHD----LVSWNSILKAYALHGQAKEALQLFSNMNVQPDS---ATFVSLLSACSHAGLVQEGNKVFHSM 340 (589)
Q Consensus 268 ~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~ 340 (589)
+.+..+++.-...+ ..-+ +.+...+..|+.+-+..+++. |..|+. .-.+.+ ...+..|+.+-...+++
T Consensus 82 ~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~~iv~~Ll~~-gad~~~~~~~g~tpL-h~A~~~~~~~~v~~Ll~-- 156 (413)
T PHA02875 82 KAVEELLDLGKFADDVFYKDGM-TPLHLATILKKLDIMKLLIAR-GADPDIPNTDKFSPL-HLAVMMGDIKGIELLID-- 156 (413)
T ss_pred HHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHh--
Confidence 98888887643211 1111 233344566776544444443 444432 222233 33345677665544443
Q ss_pred HHhcCCccCc---chHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHH
Q 043490 341 LENHGVVPQL---DHYACMVDLLGRVGRILEAEKLIREMPMEPDSVI---WSVLLGSCRKHGETRLAELAAT 406 (589)
Q Consensus 341 ~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~ 406 (589)
.|..++. .-.+ .+...+..|+.+-+.-+++. +..|+... ..+++......|+.+.+..+++
T Consensus 157 ---~g~~~~~~d~~g~T-pL~~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 157 ---HKACLDIEDCCGCT-PLIIAMAKGDIAICKMLLDS-GANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred ---cCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhC-CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence 2443332 2222 33344556776655555543 33333211 1244554456677765555544
No 403
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=40.32 E-value=1.4e+02 Score=30.45 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=36.2
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 377 PMEPD--SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 377 ~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
.++|. .-+..+-+..+.+++|+..|-.+.++++++.|.... .+.|.+++..-.+
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~--------------a~qArKil~~~e~ 348 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV--------------AEQARKILQACER 348 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH--------------HHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH--------------HHHHHHHHHHHhc
Confidence 45554 456677788889999999999999999999885421 2356777665543
No 404
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=39.64 E-value=35 Score=25.22 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=18.9
Q ss_pred cHHHHHHHHHHHHHHHHhCCcccCCCcc
Q 043490 474 QREAIFKKLEELIGQLKGMGYVPETSLA 501 (589)
Q Consensus 474 ~~~~~~~~l~~l~~~m~~~g~~pd~~~~ 501 (589)
...++...+++...+++..|+.||...+
T Consensus 6 ~li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 6 DLIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 4456778888899999999999997554
No 405
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=39.51 E-value=2.5e+02 Score=27.30 Aligned_cols=15 Identities=20% Similarity=0.149 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhcCCC
Q 043490 400 LAELAATKLKQLEPG 414 (589)
Q Consensus 400 ~a~~~~~~~~~~~p~ 414 (589)
.|.+...++.+.+|.
T Consensus 380 ~AvEAihRAvEFNPH 394 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPH 394 (556)
T ss_pred HHHHHHHHHhhcCCC
Confidence 355666666777764
No 406
>PRK10941 hypothetical protein; Provisional
Probab=39.45 E-value=1.3e+02 Score=28.72 Aligned_cols=64 Identities=9% Similarity=-0.013 Sum_probs=43.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhH
Q 043490 355 CMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLG 418 (589)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 418 (589)
.+-.+|.+.++++.|+...+.+ .+.|+ ..-|.--.-.|.+.|....|..-++..++.-|+++.+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 3445666777777777777766 44454 5556555666777777777777777777777766544
No 407
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.68 E-value=1.3e+02 Score=23.00 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=9.0
Q ss_pred HhccCcHHHHHHHHHHhH
Q 043490 324 CSHAGLVQEGNKVFHSML 341 (589)
Q Consensus 324 ~~~~g~~~~a~~~~~~~~ 341 (589)
....|..++|.+.+++.+
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 344455555555554443
No 408
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=38.12 E-value=4.9e+02 Score=27.17 Aligned_cols=91 Identities=9% Similarity=-0.072 Sum_probs=54.5
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhh
Q 043490 352 HYACMVDLLGRVGRILEAEKLIREMPM--EPDSVIWSVLLGSCR--KHGETRLAELAATKLKQLEPGDSLGFVQMSNIYC 427 (589)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 427 (589)
.-+.+++-+-+.|-..+|...+..... .|+...+.-++..=. ..-+...+...++.+...-..++..|...+..-.
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEEL 541 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhc
Confidence 345667777777888888888777711 345666666554321 2223566666777766533356667666666556
Q ss_pred hcCChHHHHHHHHHH
Q 043490 428 LSGSFNKARLIRKEM 442 (589)
Q Consensus 428 ~~g~~~~a~~~~~~m 442 (589)
..|..+.+-.++.+.
T Consensus 542 ~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 542 PLGRPENCGQIYWRA 556 (568)
T ss_pred cCCCcccccHHHHHH
Confidence 667666665555443
No 409
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.79 E-value=89 Score=24.03 Aligned_cols=53 Identities=11% Similarity=0.106 Sum_probs=34.3
Q ss_pred HHHcCCHHHHHHHHHHHhhcC----CCC-----hhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 392 CRKHGETRLAELAATKLKQLE----PGD-----SLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 392 ~~~~g~~~~a~~~~~~~~~~~----p~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
..+.|++..|.+.+.+..... ... ..+...++..+...|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345677777766666554422 111 22344577778889999999999987754
No 410
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.30 E-value=2.3e+02 Score=23.24 Aligned_cols=43 Identities=5% Similarity=0.184 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 043490 234 HASAVHSLIAKYGFE-DDTVIANALIHAYARCGSISLSKQVFDK 276 (589)
Q Consensus 234 ~a~~i~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 276 (589)
.+.++|..|...|+- .-...|..-...+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 888999999988764 4466778888888999999999998874
No 411
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.67 E-value=1.2e+02 Score=19.87 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=24.7
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCTFSIVLK 224 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 224 (589)
.+.|...++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 567777788888888888887777777766654
No 412
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=36.51 E-value=2.3e+02 Score=23.32 Aligned_cols=56 Identities=13% Similarity=0.078 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 043490 202 FLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALI 258 (589)
Q Consensus 202 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 258 (589)
+-++.+..-.+.|++......|.||-+.+|+..|.++++-++.. ..+...+|-.++
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 33444555567889999999999999999999999988776543 233333454443
No 413
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=36.42 E-value=1.3e+02 Score=32.41 Aligned_cols=62 Identities=11% Similarity=0.056 Sum_probs=25.9
Q ss_pred chhHHHHHHHHHhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043490 137 HVYVANALINMYSK-SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQR 209 (589)
Q Consensus 137 ~~~~~~~li~~y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~ 209 (589)
+......++..+.+ |-.+.|.++.+. +..-+.+.|++.+|+..+.+.|+....-.+-..+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~-----------~~~~~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKI-----------LGQRLLKEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH-----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHH-----------HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444556666666 666666665443 333344556677777777777777666555555443
No 414
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=35.74 E-value=1.4e+02 Score=29.07 Aligned_cols=85 Identities=16% Similarity=0.095 Sum_probs=60.8
Q ss_pred HHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCC
Q 043490 358 DLLGRVGRILEAEKLIREM----PMEPD--SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGS 431 (589)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 431 (589)
+-|.+..++..|...|.+. --.|| .+.|+.-..+-...||+..++.=..+++..+|.+...|..=+.++....+
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH
Confidence 3466677777777777655 11343 56677666666777888888888888888999888888877777777777
Q ss_pred hHHHHHHHHHH
Q 043490 432 FNKARLIRKEM 442 (589)
Q Consensus 432 ~~~a~~~~~~m 442 (589)
+++|....++.
T Consensus 169 ~~~a~nw~ee~ 179 (390)
T KOG0551|consen 169 FAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHhhh
Confidence 66666655543
No 415
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=35.71 E-value=14 Score=26.17 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=16.5
Q ss_pred ceEEEecCCccccccCCccCC
Q 043490 565 KEIVVRDSNRFHHFKDRICSC 585 (589)
Q Consensus 565 ~~~~~~~~~~~h~~~~g~~s~ 585 (589)
..|=+.|.+..|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 456788999999999998653
No 416
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.21 E-value=1.7e+02 Score=29.79 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcH---------------HHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 043490 214 PDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDT---------------VIANALIHAYARCGSISLSKQVFDKMT 278 (589)
Q Consensus 214 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~---------------~~~~~li~~~~~~g~~~~A~~~~~~~~ 278 (589)
|+.....++++.+-..-+-....+.+....+.+.+.+. +..-.|+..++-.|++..|.++++.+.
T Consensus 70 ~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 70 PDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred cCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccC
Q ss_pred -----------CCChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 043490 279 -----------YHDLVSWNSILKAYALHGQAKEALQLFSN 307 (589)
Q Consensus 279 -----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 307 (589)
.-.+.++--+.-+|...+++.+|.+.|..
T Consensus 150 l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~ 189 (404)
T PF10255_consen 150 LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQ 189 (404)
T ss_pred cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHH
No 417
>PHA02875 ankyrin repeat protein; Provisional
Probab=34.79 E-value=4e+02 Score=27.10 Aligned_cols=207 Identities=12% Similarity=0.032 Sum_probs=100.0
Q ss_pred hCcCcHHHHHHHHHHHHHhCCCCcHHH--HHHHHHHHHhcCCHHHHHHHHhhcCCCChh--HHHHHHHHHHHcCCHHHHH
Q 043490 227 AGLVTERHASAVHSLIAKYGFEDDTVI--ANALIHAYARCGSISLSKQVFDKMTYHDLV--SWNSILKAYALHGQAKEAL 302 (589)
Q Consensus 227 ~~~~~~~~a~~i~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~ 302 (589)
+..|+.+.+. .+++.|..++... ..+.+...++.|+.+-+.-+++.-..++.. ...+-+...+..|+.+.+.
T Consensus 10 ~~~g~~~iv~----~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 10 ILFGELDIAR----RLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HHhCCHHHHH----HHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 4456665544 4455676665432 334556667889988777776654433321 1123355566788888777
Q ss_pred HHHHhCCC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcch--HHHHHHHHhhcCCHHHHHHHHHhCC
Q 043490 303 QLFSNMNV---QPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDH--YACMVDLLGRVGRILEAEKLIREMP 377 (589)
Q Consensus 303 ~~~~~m~~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~ 377 (589)
.+++.-.. ..+..-.+.+ ...+..|+.+-...++ + .|..|+... -.+.+...+..|+.+-+..+++.-
T Consensus 86 ~Ll~~~~~~~~~~~~~g~tpL-~~A~~~~~~~iv~~Ll----~-~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g- 158 (413)
T PHA02875 86 ELLDLGKFADDVFYKDGMTPL-HLATILKKLDIMKLLI----A-RGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK- 158 (413)
T ss_pred HHHHcCCcccccccCCCCCHH-HHHHHhCCHHHHHHHH----h-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC-
Confidence 77765411 1111112222 3333456665444333 3 266654331 223445556778877766666543
Q ss_pred CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCcc
Q 043490 378 MEP---DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVRK 449 (589)
Q Consensus 378 ~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 449 (589)
..+ |..-++.|. .....|+.+.+..+++.-...+..+.....+++..-+..|+.+-+ +.+.++|..+
T Consensus 159 ~~~~~~d~~g~TpL~-~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv----~~Ll~~gad~ 228 (413)
T PHA02875 159 ACLDIEDCCGCTPLI-IAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIV----RLFIKRGADC 228 (413)
T ss_pred CCCCCCCCCCCCHHH-HHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHH----HHHHHCCcCc
Confidence 222 222233333 344567776555544432222211111112333333455665433 3344566543
No 418
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.58 E-value=50 Score=23.18 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=21.2
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 043490 72 NVVSWTALISGYAQHGNAEECFRLFCSLLQY 102 (589)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 102 (589)
|-.-.-.+|.+|.+.|++++|.+..+++...
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3334445778888888888888888777653
No 419
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=34.34 E-value=85 Score=30.07 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=23.5
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh
Q 043490 362 RVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDS 416 (589)
Q Consensus 362 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 416 (589)
+.|+.++|..+|+.. .+.|+ +.+...+..-.-.+++.-+|.+.+-+++...|.+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 445555555555443 33332 23332333333333444444455544444444443
No 420
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=33.81 E-value=4.4e+02 Score=25.35 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=82.1
Q ss_pred HcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHhcCCHH
Q 043490 193 KMKNEEEALFLFRQLQR-EGMAPDWCTFSIVLKACAG--LVTERHASAVHSLIAKY-GFEDDTVIANALIHAYARCGSIS 268 (589)
Q Consensus 193 ~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~--~~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~ 268 (589)
++....+|+++|+.... ..+--|......+++.... ...+..-.++.+.+... |-.++..+...+++.+++.+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 44556677777774322 2355677777777777643 22344444555555433 34677788888999999999999
Q ss_pred HHHHHHhhcC-----CCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043490 269 LSKQVFDKMT-----YHDLVSWNSILKAYALHGQAKEALQLFSNM 308 (589)
Q Consensus 269 ~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 308 (589)
.-.++++... ..|...|..+|......|+..-...+..+-
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 9999988765 457889999999999999988777777664
No 421
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=33.76 E-value=4.9e+02 Score=26.33 Aligned_cols=48 Identities=8% Similarity=0.074 Sum_probs=24.4
Q ss_pred HcCCHHHHHHHHHhC--CCCCCHH--HHHHHHHHHh--ccCcHHHHHHHHHHhH
Q 043490 294 LHGQAKEALQLFSNM--NVQPDSA--TFVSLLSACS--HAGLVQEGNKVFHSML 341 (589)
Q Consensus 294 ~~g~~~~A~~~~~~m--~~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~ 341 (589)
+.+++..|.++|+++ .+.++.. .+..+..+|. ..-++++|.+.++...
T Consensus 143 n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 556666666666666 2333332 2333333333 2445666666666554
No 422
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.64 E-value=2.3e+02 Score=31.69 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=36.7
Q ss_pred HHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHh
Q 043490 52 YAKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHGNAEECFRLFCSLLQ 101 (589)
Q Consensus 52 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 101 (589)
...||+++.|++.-.++. |...|..|...-.+.|+.+-|...|++...
T Consensus 653 aLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 345677777776655554 556899999999999999999988887654
No 423
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.57 E-value=73 Score=22.36 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=18.8
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 415 DSLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 415 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
|......++.+|...|++++|.++.+.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445567777777777777777776654
No 424
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=32.70 E-value=1.2e+02 Score=18.54 Aligned_cols=28 Identities=18% Similarity=-0.063 Sum_probs=14.2
Q ss_pred HHHHHHHHHcCCHHHHHHH--HHHHhhcCC
Q 043490 386 SVLLGSCRKHGETRLAELA--ATKLKQLEP 413 (589)
Q Consensus 386 ~~ll~~~~~~g~~~~a~~~--~~~~~~~~p 413 (589)
-.+...+-..|++++|+.+ ++-+..++|
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3444455566666666666 335444443
No 425
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=32.14 E-value=2.9e+02 Score=22.77 Aligned_cols=53 Identities=15% Similarity=0.045 Sum_probs=24.1
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHH
Q 043490 352 HYACMVDLLGRVGRILEAEKLIREMPMEPDSVIW-SVLLGSCRKHGETRLAELA 404 (589)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~-~~ll~~~~~~g~~~~a~~~ 404 (589)
+..++..++.=.|..++|.++++..+..++-... .-++..|++..+.++..++
T Consensus 68 cvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~ 121 (127)
T PF04034_consen 68 CVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEI 121 (127)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3344444555555555555555555433332222 2344455544444444333
No 426
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=31.99 E-value=2.6e+02 Score=22.24 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=11.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 043490 353 YACMVDLLGRVGRILEAEKLIREM 376 (589)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m 376 (589)
|..|+..|...|..++|++++.+.
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l 65 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKL 65 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHH
Confidence 444444444444444444444443
No 427
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.94 E-value=5.5e+02 Score=25.60 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=34.6
Q ss_pred Hhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043490 148 YSK-SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREG 211 (589)
Q Consensus 148 y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g 211 (589)
+.+ ++..-|......+..++...|+-....+. -.+ +.-.++.+..++|.+..-+|.+.|
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLs-L~d----IA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLS-LSD----IASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHH----HHHHHHhcchHHHHHHHHHHhccC
Confidence 345 66667777777777776666554433220 000 000156777888888888887765
No 428
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=30.84 E-value=3.4e+02 Score=25.33 Aligned_cols=80 Identities=6% Similarity=-0.089 Sum_probs=52.3
Q ss_pred HHhcCCHHHHHHHHhhcC--CCChh-HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHhccCcHHHHHH
Q 043490 261 YARCGSISLSKQVFDKMT--YHDLV-SWNSILKAYALHGQAKEALQLFSNM-NVQPDSATFV-SLLSACSHAGLVQEGNK 335 (589)
Q Consensus 261 ~~~~g~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~-~ll~a~~~~g~~~~a~~ 335 (589)
|.....++.|...|.+.. .|++. -|+.=+.++.+..+++.+.+--++. .+.||.+--. .+..+......+++|..
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 445566777777776655 55553 4556677777778887777666666 7777766433 34445566677777777
Q ss_pred HHHHh
Q 043490 336 VFHSM 340 (589)
Q Consensus 336 ~~~~~ 340 (589)
.+++.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 77665
No 429
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=30.72 E-value=3e+02 Score=22.52 Aligned_cols=81 Identities=15% Similarity=0.037 Sum_probs=0.0
Q ss_pred hhcCCHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHh-------hcCCCChhHH
Q 043490 361 GRVGRILEAEKLIREM-----PMEP---------DSVIWSVLLGSCRKHGETRLAELAATKLK-------QLEPGDSLGF 419 (589)
Q Consensus 361 ~~~g~~~~A~~~~~~m-----~~~p---------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~ 419 (589)
...|.+++|..-..+. .+.| |...+..|-.++...|++++++...+..+ +++.+....|
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Q ss_pred H----HHHHHhhhcCChHHHHHHHHH
Q 043490 420 V----QMSNIYCLSGSFNKARLIRKE 441 (589)
Q Consensus 420 ~----~l~~~~~~~g~~~~a~~~~~~ 441 (589)
. +-..++...|+.++|.+.|+.
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
No 430
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=30.42 E-value=91 Score=28.66 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=50.5
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCC
Q 043490 392 CRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRV 447 (589)
Q Consensus 392 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 447 (589)
..+.++.+.+.+++.++.++-|.....|..+...-.++|+++.|.+.+++..+.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 45678899999999999999999999999999999999999999999999877554
No 431
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=30.21 E-value=2.8e+02 Score=22.06 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=22.5
Q ss_pred HHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043490 177 AFRACKLEAQAIELFAKMKNEEEALFLFRQLQR 209 (589)
Q Consensus 177 ~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~ 209 (589)
.+.+.+.+.+-..+|...|..++|++++.++..
T Consensus 35 ~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 35 VLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 334445555555555888888888888888766
No 432
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=29.87 E-value=1.5e+02 Score=24.81 Aligned_cols=36 Identities=14% Similarity=-0.026 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChh
Q 043490 382 SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSL 417 (589)
Q Consensus 382 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 417 (589)
....-.|.-++.+.|+++.+.++.+.+++.+|+|..
T Consensus 71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 71 RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 334445667889999999999999999999997653
No 433
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.55 E-value=1.1e+02 Score=29.33 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=18.4
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCTF 219 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 219 (589)
.+.|+.++|++++++..+.|+.--..||
T Consensus 268 Vk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 268 VKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 7777777777777777777665444444
No 434
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=29.53 E-value=3e+02 Score=29.23 Aligned_cols=133 Identities=18% Similarity=0.103 Sum_probs=87.8
Q ss_pred CCCHHHHHHHHHHHhcc--CcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhh-cCCHHHHHHHHHhC-CCCCC--HHH
Q 043490 311 QPDSATFVSLLSACSHA--GLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGR-VGRILEAEKLIREM-PMEPD--SVI 384 (589)
Q Consensus 311 ~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m-~~~p~--~~~ 384 (589)
-|+..+.-.++.-.... ...+-|-.++..|. + .+.|--...| +...|-| .|+...|.+.+... ..+|- -+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~-~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-K-PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-C-CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 35666665555444332 23455666666653 2 3333222222 2344554 68888898887776 33442 233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 385 WSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 385 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
...|.....+.|-.-.|-.++.+.+.+....+.++..+.++|....+.+.|++.|+...+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 44566667777778888889988888877778899999999999999999999998776654
No 435
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=29.44 E-value=8.7e+02 Score=27.44 Aligned_cols=263 Identities=19% Similarity=0.105 Sum_probs=146.5
Q ss_pred HHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHH---cC-----------CCCCHHHHH----HHHHHH--hCcCcHHHH
Q 043490 176 AAFRACKLEAQAIELFAKMKNEEEALFLFRQLQR---EG-----------MAPDWCTFS----IVLKAC--AGLVTERHA 235 (589)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~---~g-----------~~p~~~t~~----~ll~a~--~~~~~~~~a 235 (589)
..+...|..++|++--...|+++.|-.++++... .+ --|+....+ .++.++ ....++++|
T Consensus 355 ~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea 434 (894)
T COG2909 355 EWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEA 434 (894)
T ss_pred HHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHH
Confidence 3456778888899999999999998888877511 10 113322211 233443 456788999
Q ss_pred HHHHHHHHHhCCCCcHH-------HHHHHHH-HHHhcCCHHHHHHHHhhcC--------CCChhHHHHHHHHHHHcCCHH
Q 043490 236 SAVHSLIAKYGFEDDTV-------IANALIH-AYARCGSISLSKQVFDKMT--------YHDLVSWNSILKAYALHGQAK 299 (589)
Q Consensus 236 ~~i~~~~~~~g~~~~~~-------~~~~li~-~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~ 299 (589)
..+..++...--.|+.. .+++|-. .....|+++.|.++-+... ...++.+..+..+..-.|+++
T Consensus 435 ~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~ 514 (894)
T COG2909 435 ETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELT 514 (894)
T ss_pred HHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHH
Confidence 99988876653232221 2333322 2334688888877766543 346677888888888999999
Q ss_pred HHHHHHHhC---CCCCCHHH---HHHH--HHHHhccCc--HHHHHHHHHHhHHhcCCc-c----CcchHHHHHHHHhhcC
Q 043490 300 EALQLFSNM---NVQPDSAT---FVSL--LSACSHAGL--VQEGNKVFHSMLENHGVV-P----QLDHYACMVDLLGRVG 364 (589)
Q Consensus 300 ~A~~~~~~m---~~~p~~~t---~~~l--l~a~~~~g~--~~~a~~~~~~~~~~~~~~-p----~~~~~~~li~~~~~~g 364 (589)
+|..+.++. .-+-|..- +..+ ...+...|. .++....|......+.-. | -..++..+..++.+
T Consensus 515 ~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r-- 592 (894)
T COG2909 515 QALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR-- 592 (894)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH--
Confidence 999887766 11222222 2222 223445663 333344444432221111 1 12344445555555
Q ss_pred CHHHHHHHHHhC-----CCCCC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHhhcC--CCChhHHH-----HHHHHhhh
Q 043490 365 RILEAEKLIREM-----PMEPD--SV--IWSVLLGSCRKHGETRLAELAATKLKQLE--PGDSLGFV-----QMSNIYCL 428 (589)
Q Consensus 365 ~~~~A~~~~~~m-----~~~p~--~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~-----~l~~~~~~ 428 (589)
++.+..-.... ...|. .. .+..|+......|+.+.|....+++..+- +.....|. .-...-..
T Consensus 593 -~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~ 671 (894)
T COG2909 593 -LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLA 671 (894)
T ss_pred -HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcc
Confidence 33333322222 11222 11 12356778888999999999988887643 21112222 22223356
Q ss_pred cCChHHHHHHHHH
Q 043490 429 SGSFNKARLIRKE 441 (589)
Q Consensus 429 ~g~~~~a~~~~~~ 441 (589)
.|+...+.....+
T Consensus 672 qg~~~~a~~~l~~ 684 (894)
T COG2909 672 QGDKELAAEWLLK 684 (894)
T ss_pred cCCHHHHHHHHHh
Confidence 7888888777665
No 436
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=29.35 E-value=6.2e+02 Score=25.69 Aligned_cols=121 Identities=19% Similarity=0.107 Sum_probs=70.5
Q ss_pred HhCCChhHHHHHHHHHHhc-cCCCceeHHHHHHHhc------------h-hhHHHHHHHHHHhcC----CCchhHHHHHH
Q 043490 84 AQHGNAEECFRLFCSLLQY-FFPNEFSLASVLISCD------------Y-LHGKLVHALALKFSL----DAHVYVANALI 145 (589)
Q Consensus 84 ~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~~l~a~~------------~-~~~~~~~~~~~~~g~----~~~~~~~~~li 145 (589)
..+.++++|.++-+..... ..-|..|+..+..-+. + ...-.++..+....+ .......|.|+
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL 216 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL 216 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence 3457788888888777766 5566666655544333 1 111122222222223 33455677788
Q ss_pred HHHhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043490 146 NMYSK-SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQRE 210 (589)
Q Consensus 146 ~~y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~ 210 (589)
..|.. +.++.|.++..+..-|+..+-|-...-+.-.|... +-.+++..|.+.|-+....
T Consensus 217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIk------aiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIK------AIQLDYSSALEYFLQALRK 276 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHH------HhhcchhHHHHHHHHHHHh
Confidence 88888 88999999998888765544333222221111111 4567778888877776654
No 437
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=29.23 E-value=3.2e+02 Score=28.55 Aligned_cols=89 Identities=16% Similarity=0.190 Sum_probs=60.7
Q ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC--------ChhHHH
Q 043490 349 QLDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPG--------DSLGFV 420 (589)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------~~~~~~ 420 (589)
++..|-..+.-|+-.+++++|.++-.-.+ +...|.+|......+.+..-++.++..+.+.+.- -+..-.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 45567778888889999999999887654 6778888888888888888777777766654320 011122
Q ss_pred HHHHHhhhcCChHHHHHHHH
Q 043490 421 QMSNIYCLSGSFNKARLIRK 440 (589)
Q Consensus 421 ~l~~~~~~~g~~~~a~~~~~ 440 (589)
.++....-.|+..+|.-++.
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHhccchhhhHHHH
Confidence 34444445677777776654
No 438
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=28.85 E-value=1.2e+02 Score=22.00 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhc
Q 043490 20 NIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKF 55 (589)
Q Consensus 20 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 55 (589)
+.+.|.+++..+... .+.++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~d---ekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDD---EKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcch---hhcChHHHHHHHHHHHHc
Confidence 466677777766543 236888999988887765
No 439
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=28.80 E-value=3.6e+02 Score=22.86 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=53.6
Q ss_pred HHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 043490 192 AKMKNEEEALFLFRQLQREG-----MAPDWCTFSIVLKACAGLVT-ERHASAVHSLIAKYGFEDDTVIANALIHAYARC 264 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~a~~~~~~-~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~ 264 (589)
+..+.+...+.+++.+..-. -..+..+|.+++.+.++... --.+..+|..+.+.+.+.+..-|..++....+.
T Consensus 50 ~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 50 ASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 55566666666666553211 12456689999999988777 566788999999988899999999999887764
No 440
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=28.78 E-value=4.4e+02 Score=23.79 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043490 283 VSWNSILKAYALHGQAKEALQLFSNM 308 (589)
Q Consensus 283 ~~~~~li~~~~~~g~~~~A~~~~~~m 308 (589)
...+.++..+...|+++.|-+.|.-+
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lL 67 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLL 67 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 35566777777777777777777766
No 441
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=28.71 E-value=6.8e+02 Score=25.97 Aligned_cols=83 Identities=16% Similarity=0.158 Sum_probs=44.3
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHH
Q 043490 17 LHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK---RNVVSWTALISGYAQHGNAEECF 93 (589)
Q Consensus 17 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 93 (589)
..|++..|-+-....++..| .++.............|+++.+...+..... ....+-..+++..-+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~---~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQ---QDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCC---CCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 45666665544444444433 2222222223344556667766666654432 34445556666666666677776
Q ss_pred HHHHHHHhc
Q 043490 94 RLFCSLLQY 102 (589)
Q Consensus 94 ~~~~~m~~~ 102 (589)
.+-.-|+.+
T Consensus 378 s~a~~~l~~ 386 (831)
T PRK15180 378 STAEMMLSN 386 (831)
T ss_pred HHHHHHhcc
Confidence 666666655
No 442
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.61 E-value=7.6e+02 Score=26.50 Aligned_cols=144 Identities=10% Similarity=0.044 Sum_probs=79.8
Q ss_pred HHHHHHHHhhCCC-CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHH
Q 043490 153 ADEAWKVFENMEF-RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQR-------EGMAPDWCTFSIVLK 224 (589)
Q Consensus 153 ~~~A~~lf~~m~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~ 224 (589)
...|.+.++.... .++..-..+...|..-+ +....+.+.|+.+|+.... .| +......+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~--------~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~ 296 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGT--------YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGR 296 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhcc--------ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHH
Confidence 3456677766554 34444333333331110 1456678888888887766 44 2224444555
Q ss_pred HHhCc----C-cHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH---
Q 043490 225 ACAGL----V-TERHASAVHSLIAKYGFEDDTVIANALIHAYAR-CGSISLSKQVFDKMTY-HDLVSWNSILKAYAL--- 294 (589)
Q Consensus 225 a~~~~----~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~--- 294 (589)
+|.+. . +.+.|..++....+.| .|+....-..+..... -.+...|.++|...-. -.+.+.-.+...|..
T Consensus 297 ~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 297 LYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLG 375 (552)
T ss_pred HHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Confidence 55443 2 6778999999988888 4555444443333333 2457788888887653 233333333333322
Q ss_pred -cCCHHHHHHHHHhC
Q 043490 295 -HGQAKEALQLFSNM 308 (589)
Q Consensus 295 -~g~~~~A~~~~~~m 308 (589)
..+.+.|..++.+.
T Consensus 376 v~r~~~~A~~~~k~a 390 (552)
T KOG1550|consen 376 VERNLELAFAYYKKA 390 (552)
T ss_pred cCCCHHHHHHHHHHH
Confidence 23566666666666
No 443
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=28.22 E-value=9.7e+02 Score=27.62 Aligned_cols=93 Identities=16% Similarity=0.009 Sum_probs=40.9
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHH
Q 043490 279 YHDLVSWNSILKAYALHGQAKEALQLFSNMNVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVD 358 (589)
Q Consensus 279 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 358 (589)
.+|...-.+.+.++.+.|....+...+..+--.+|...=...+.++...+. +++...+..+.+ .|+..+-...+.
T Consensus 786 D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~----D~~~~VR~~A~~ 860 (897)
T PRK13800 786 DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT----DPHLDVRKAAVL 860 (897)
T ss_pred CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc----CCCHHHHHHHHH
Confidence 455555555555555555544332222222112344444444555555443 233333333332 344455555555
Q ss_pred HHhhcCCHHHHHHHHHhC
Q 043490 359 LLGRVGRILEAEKLIREM 376 (589)
Q Consensus 359 ~~~~~g~~~~A~~~~~~m 376 (589)
++++.+.-..+...+...
T Consensus 861 aL~~~~~~~~a~~~L~~a 878 (897)
T PRK13800 861 ALTRWPGDPAARDALTTA 878 (897)
T ss_pred HHhccCCCHHHHHHHHHH
Confidence 555543233344444333
No 444
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.89 E-value=1.8e+02 Score=27.28 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=6.3
Q ss_pred HHHHhCCChhHHHHHH
Q 043490 81 SGYAQHGNAEECFRLF 96 (589)
Q Consensus 81 ~~~~~~g~~~~A~~~~ 96 (589)
..|...|++.+|++-|
T Consensus 18 rl~l~~~~~~~Av~q~ 33 (247)
T PF11817_consen 18 RLYLWLNQPTEAVRQF 33 (247)
T ss_pred HHHHhCCCHHHHHHHH
Confidence 3333344444443333
No 445
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=27.77 E-value=5.7e+02 Score=24.81 Aligned_cols=70 Identities=14% Similarity=0.192 Sum_probs=36.3
Q ss_pred cCcHHHHHHHHHHhHHhcCCccCcc----hHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043490 327 AGLVQEGNKVFHSMLENHGVVPQLD----HYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAE 402 (589)
Q Consensus 327 ~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~ 402 (589)
...+++......+-.++.+ -|+.. +|.+++++ +.|.+-.++..+-. -....+|.-|+.+++..|+.+...
T Consensus 268 e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsa----veWnKkeelva~qa-lrhlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 268 EDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSA----VEWNKKEELVAEQA-LRHLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred CCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHH----HhhchHHHHHHHHH-HHHHHhhhHHHHHHhcCChHHHHH
Confidence 3445555544444335534 45554 45555544 33333222222110 013557888899999998887664
No 446
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=27.72 E-value=2.8e+02 Score=21.17 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHH---hcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHH
Q 043490 24 AMQLHEHMINNFPNEPQDLFVTNHLINMYA---KFGYLDDARHLFDEMPKRNVVSWTALISGYAQHGNAEECF 93 (589)
Q Consensus 24 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 93 (589)
+.+++..+.+. +.++..-.=..-+ ..|+.+.|+++++.++ +.+-.+..+++++-+.|.-+-|.
T Consensus 21 ~~~v~d~ll~~------~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQ------GLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhc------CCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 45566666654 2233332223333 5689999999999999 88889999999999888765553
No 447
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=27.67 E-value=1.1e+02 Score=29.38 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=30.2
Q ss_pred hccCcHHHHHHHHHHhHHhcCCccC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 043490 325 SHAGLVQEGNKVFHSMLENHGVVPQ-LDHYACMVDLLGRVGRILEAEKLIREM-PMEPD 381 (589)
Q Consensus 325 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 381 (589)
-+.|+.++|..+|+... .+.|+ +....-+....-...++-+|-..+-+. .+.|.
T Consensus 127 ~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 45789999999998775 34553 222222222223334555666665554 55553
No 448
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.30 E-value=6.6e+02 Score=25.38 Aligned_cols=53 Identities=9% Similarity=-0.006 Sum_probs=31.4
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHH--hCcCcHHHHHHHHHHHHHh
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWC--TFSIVLKAC--AGLVTERHASAVHSLIAKY 245 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~--~~~~~~~~a~~i~~~~~~~ 245 (589)
...+++..|.++|+++... ++++.. .+..+..+| -..-+.++|.+.++...+.
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3677888888888888876 555444 233333333 2344566666666655443
No 449
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.03 E-value=2.1e+02 Score=22.62 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=30.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHhCCCCcHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGL--VTERHASAVHSLIAKYGFEDDTVI 253 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--~~~~~a~~i~~~~~~~g~~~~~~~ 253 (589)
...|+.++|...+.++.... --......++..+... ...+....++..+.+.+.-+....
T Consensus 13 ~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~ 74 (113)
T PF02847_consen 13 FSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQF 74 (113)
T ss_dssp HHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHH
T ss_pred hcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 77788888888887763321 1112233333333333 334455566666666664444333
No 450
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=26.96 E-value=5.5e+02 Score=24.31 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcH-----HHHHHHHHHhHHhcCCccCcchHHHHH
Q 043490 284 SWNSILKAYALHGQAKEALQLFSNM-NVQPDSATFVSLLSACSHAGLV-----QEGNKVFHSMLENHGVVPQLDHYACMV 357 (589)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~~g~~-----~~a~~~~~~~~~~~~~~p~~~~~~~li 357 (589)
-.+.++..+.+.|...+|..+.+.+ ..+-=..+.-.++......... ......+....+-. .. ...|-.++
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll--~~-f~~~l~Iv 160 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSLPYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLL--QE-FPEYLEIV 160 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccCCCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH--Hc-CcchHHHH
Confidence 4456777777777777777777777 3332233333344322211100 11111122111100 00 11233444
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh-------hHHHHHHHHhhhcC
Q 043490 358 DLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDS-------LGFVQMSNIYCLSG 430 (589)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g 430 (589)
-.++|.=+...--.+|+..| .| ..|+.-|.+.|+.+.|-.++--+...++.+. ..-..|+.+....|
T Consensus 161 v~C~RKtE~~~W~~LF~~lg-~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~ 234 (258)
T PF07064_consen 161 VNCARKTEVRYWPYLFDYLG-SP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESG 234 (258)
T ss_pred HHHHHhhHHHHHHHHHHhcC-CH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcc
Confidence 44444444444455666654 33 2577888999999999887777766554332 23346777888899
Q ss_pred ChHHHHHHHHHHhcC
Q 043490 431 SFNKARLIRKEMKGS 445 (589)
Q Consensus 431 ~~~~a~~~~~~m~~~ 445 (589)
+|+-+.++.+-++.-
T Consensus 235 ~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 235 DWDLCFELVRFLKAL 249 (258)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999888877643
No 451
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.66 E-value=8.6e+02 Score=26.49 Aligned_cols=48 Identities=13% Similarity=0.014 Sum_probs=32.2
Q ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhcCCHH
Q 043490 221 IVLKACAGLVTERHASAVHSLIAKYG--FEDDTVIANALIHAYARCGSIS 268 (589)
Q Consensus 221 ~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~ 268 (589)
+++.+|...|++-.+.++++...... -+.-...+|..+.-..+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 78888888888888888888776653 2222345666666666666543
No 452
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=26.50 E-value=5.3e+02 Score=23.98 Aligned_cols=54 Identities=11% Similarity=0.014 Sum_probs=37.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hCcCcHHHHHHHHHHHHH
Q 043490 191 FAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKAC-AGLVTERHASAVHSLIAK 244 (589)
Q Consensus 191 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~~~~~~a~~i~~~~~~ 244 (589)
..+.|+++++...++++...+...+..--+.+-.+| ...|....+.+++..+..
T Consensus 11 aeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 11 AEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 388999999999999999988777877777776666 334555556666655544
No 453
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=26.37 E-value=2.5e+02 Score=21.16 Aligned_cols=62 Identities=19% Similarity=0.364 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHH
Q 043490 25 MQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHGNAEEC 92 (589)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 92 (589)
..++..+.+. .+.+....-...+...+.+.|.++++.++.++..+|.++.+++-..|...-|
T Consensus 19 ~~v~~~L~~~------~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSR------GVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhc------CCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3455555543 2333333444445566789999999999999999999999999888865544
No 454
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.05 E-value=9.9e+02 Score=26.99 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=35.6
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChh
Q 043490 13 HACALHGNIKQAMQLHEHMINNFPNEPQDL--FVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHGNAE 90 (589)
Q Consensus 13 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 90 (589)
..|...|.++.|+++-+.- |+. .++-.-...|...+++..|-+++.++. .++..+.--+....+.+
T Consensus 366 k~yLd~g~y~kAL~~ar~~--------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~----~~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR--------PDALETVLLKQADFLFQDKEYLRAAEIYAETL----SSFEEVALKFLEINQER 433 (911)
T ss_pred HHHHhcchHHHHHHhccCC--------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hhHHHHHHHHHhcCCHH
Confidence 3455677777777654322 222 233334456666777777777777763 33444444444444443
No 455
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.90 E-value=3.9e+02 Score=24.99 Aligned_cols=56 Identities=7% Similarity=-0.144 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcC------CCChhHHHHHHHHhhhcCChHHHHHHHHHH
Q 043490 387 VLLGSCRKHGETRLAELAATKLKQLE------PGDSLGFVQMSNIYCLSGSFNKARLIRKEM 442 (589)
Q Consensus 387 ~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 442 (589)
-+..-|...|++++|.++++.+...- .....+...+..++.+.|+.++...+-=++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34455566666666666666654321 112333445666666667766666554443
No 456
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=25.83 E-value=1.7e+02 Score=30.00 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=70.9
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHhHHhcCCccC-cchHHHHHHHHhhcCC
Q 043490 289 LKAYALHGQAKEALQLFSNM-NVQPDSATFVSL-LSACSHAGLVQEGNKVFHSMLENHGVVPQ-LDHYACMVDLLGRVGR 365 (589)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 365 (589)
...+...+.++.|..++.+. .+.||...|-+. -.++.+.+++..|..=....++. .|+ ...|-.=..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhHHH
Confidence 34566778899999999999 999987766544 36888889998888776666543 342 2222222334445567
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc
Q 043490 366 ILEAEKLIREM-PMEPDSVIWSVLLGSCRKH 395 (589)
Q Consensus 366 ~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~ 395 (589)
+.+|+..|+.. .+.|+..-....+.-|-..
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 77888887777 6778877776666666543
No 457
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=25.81 E-value=5.8e+02 Score=26.04 Aligned_cols=86 Identities=19% Similarity=0.218 Sum_probs=60.2
Q ss_pred HHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHH--------HHhcCCHHHHHHHHhhcC
Q 043490 207 LQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHA--------YARCGSISLSKQVFDKMT 278 (589)
Q Consensus 207 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~ 278 (589)
+....+.||..+.+.+.+.++..-..+....+++..++.+ .|-.+.+-+||-. -.+...-+++.++++.|+
T Consensus 174 LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp 252 (669)
T KOG3636|consen 174 LDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMP 252 (669)
T ss_pred hhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCc
Confidence 3445689999999988888888888889999999888887 4444444443321 134556789999999998
Q ss_pred C----CChhHHHHHHHHHH
Q 043490 279 Y----HDLVSWNSILKAYA 293 (589)
Q Consensus 279 ~----~~~~~~~~li~~~~ 293 (589)
. .|+.-+-+|..-|+
T Consensus 253 ~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 253 AQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred hhcccccchhHHHHHHHHh
Confidence 2 35555555655554
No 458
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.60 E-value=7.9e+02 Score=25.73 Aligned_cols=27 Identities=4% Similarity=-0.033 Sum_probs=17.6
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCT 218 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t 218 (589)
...++++.|+.++.+|...|..|....
T Consensus 254 i~~~d~~~Al~~l~~ll~~Gedp~~i~ 280 (472)
T PRK14962 254 IFNGDVKRVFTVLDDVYYSGKDYEVLI 280 (472)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 556677777777777777666555443
No 459
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.41 E-value=1.2e+03 Score=27.56 Aligned_cols=170 Identities=14% Similarity=0.079 Sum_probs=96.6
Q ss_pred HHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHh---------cCCCc-----hhHHHHHHHH
Q 043490 82 GYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKF---------SLDAH-----VYVANALINM 147 (589)
Q Consensus 82 ~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~---------g~~~~-----~~~~~~li~~ 147 (589)
+|...|...+|+..|.+.... ..+++.++..+... |-.|. ..-|-..+..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg----------------~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rl 992 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSG----------------FGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRL 992 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhc----------------cccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHH
Confidence 367788899999999887654 22333444444432 21121 2234555666
Q ss_pred Hhc-CCHHHHHHHH----hhCCC--CC-hhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCCC
Q 043490 148 YSK-SCADEAWKVF----ENMEF--RN-VISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQ----REGMAPD 215 (589)
Q Consensus 148 y~~-g~~~~A~~lf----~~m~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~----~~g~~p~ 215 (589)
+-+ +-.+.+.++- +..+. |. ..+++.+.+-..+.|.+.+|.++..++-+.+.-...++++. +.|.-+.
T Consensus 993 le~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 993 LEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEA 1072 (1480)
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHH
Confidence 666 6665554443 33332 22 34577888888888888888888888877666555555542 2232222
Q ss_pred HHHHHHHHHHHhCcCcHHHHHH-HHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 043490 216 WCTFSIVLKACAGLVTERHASA-VHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVF 274 (589)
Q Consensus 216 ~~t~~~ll~a~~~~~~~~~a~~-i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 274 (589)
..+ +--.|--++..+ +++..-+.........|+.|-..+...+++.+|-.+.
T Consensus 1073 L~~-------fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1073 LAT-------FPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred Hhh-------CCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 222 122244455555 4444333333333456777777778888888776553
No 460
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=25.20 E-value=3.7e+02 Score=28.11 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=21.9
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 043490 72 NVVSWTALISGYAQHGNAEECFRLFCSLL 100 (589)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 100 (589)
++..|-.++.-|...+++++|+++-+...
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~ 600 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ 600 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc
Confidence 34457778888888999999998865443
No 461
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=25.14 E-value=6.8e+02 Score=24.80 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=51.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 043490 189 ELFAKMKNEEEALFLFRQLQREGMAPDW----CTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYA 262 (589)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~ 262 (589)
++....--.++++.++.+++.. .|+. .-|..+.......|.++.+..+|+.++..|-.|-...-..+++.+-
T Consensus 111 ~Li~eGcp~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 111 NLIEEGCPKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHcCCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3333333456788888888764 4555 3466677777888888999999999999998887777777766544
No 462
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=24.83 E-value=92 Score=22.84 Aligned_cols=39 Identities=23% Similarity=0.226 Sum_probs=28.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcC
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLV 230 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 230 (589)
...|+.+.+.+++++....|..|.......+..+....|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 667888888888888888888877776666666554443
No 463
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.65 E-value=2.8e+02 Score=29.78 Aligned_cols=60 Identities=13% Similarity=0.025 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 384 IWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 384 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
....|--+|....+.+.|.++++++.+.+|.++.+-..+..+....|+-++|..+.....
T Consensus 396 ~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 396 IQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 345555556666677777777777777777666666666667777777777776665554
No 464
>PRK02287 hypothetical protein; Provisional
Probab=24.04 E-value=4.9e+02 Score=22.78 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=10.2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC
Q 043490 354 ACMVDLLGRVGRILEAEKLIREM 376 (589)
Q Consensus 354 ~~li~~~~~~g~~~~A~~~~~~m 376 (589)
.++..++.=.|..++|.++++..
T Consensus 111 EAlAaaLyI~G~~~~A~~ll~~F 133 (171)
T PRK02287 111 EALAAALYILGFKEEAEKILSKF 133 (171)
T ss_pred HHHHHHHHHcCCHHHHHHHHhhC
Confidence 33444444444444444444444
No 465
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=23.98 E-value=4.1e+02 Score=21.87 Aligned_cols=68 Identities=13% Similarity=0.164 Sum_probs=43.9
Q ss_pred HHHHHHHHhC-CCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--CCChhHHHHHHHHhhhcCChHHHHHHHH
Q 043490 367 LEAEKLIREM-PMEPDS---VIWSVLLGSCRKHGETRLAELAATKLKQLE--PGDSLGFVQMSNIYCLSGSFNKARLIRK 440 (589)
Q Consensus 367 ~~A~~~~~~m-~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 440 (589)
+++.+.|... ..+.|+ ..|-..+..| + ....+|..|...+ ..-+..|...+..+...|++.+|.++++
T Consensus 50 erc~~~f~~~~~YknD~RyLkiWi~ya~~~---~---dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 50 ERCIRYFEDDERYKNDPRYLKIWLKYADNC---D---EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---C---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444445444 334453 4455555443 3 3566777776644 4556778899999999999999999886
No 466
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=23.33 E-value=2e+02 Score=27.79 Aligned_cols=43 Identities=14% Similarity=0.045 Sum_probs=33.9
Q ss_pred CCCCHHH-HHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHH
Q 043490 212 MAPDWCT-FSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIA 254 (589)
Q Consensus 212 ~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 254 (589)
+.||..+ |+..|....+.||+++|..+.+++.+.|+..-..++
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4566654 568999999999999999999999999976544444
No 467
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=23.27 E-value=4.6e+02 Score=23.95 Aligned_cols=23 Identities=13% Similarity=0.014 Sum_probs=13.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcC
Q 043490 390 GSCRKHGETRLAELAATKLKQLE 412 (589)
Q Consensus 390 ~~~~~~g~~~~a~~~~~~~~~~~ 412 (589)
....+.|+.++|.+.|.+++...
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcCC
Confidence 34455666666666666665543
No 468
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=23.24 E-value=6e+02 Score=23.46 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=10.6
Q ss_pred HHHHhhcCCHHHHHHHHHhC
Q 043490 357 VDLLGRVGRILEAEKLIREM 376 (589)
Q Consensus 357 i~~~~~~g~~~~A~~~~~~m 376 (589)
|....+.|++++|++...+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 34445555555555555554
No 469
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=23.14 E-value=3.5e+02 Score=26.84 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhc--cCCCceeHHHH
Q 043490 77 TALISGYAQHGNAEECFRLFCSLLQY--FFPNEFSLASV 113 (589)
Q Consensus 77 ~~li~~~~~~g~~~~A~~~~~~m~~~--~~p~~~t~~~~ 113 (589)
-.|++.|+++|.+++|+++.....+- ..|+...+..+
T Consensus 110 P~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i 148 (338)
T PF04124_consen 110 PQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSI 148 (338)
T ss_pred HHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHH
Confidence 36789999999999999999887765 56664444443
No 470
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=22.75 E-value=3.4e+02 Score=20.46 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=28.4
Q ss_pred HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHH
Q 043490 262 ARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEA 301 (589)
Q Consensus 262 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 301 (589)
+...+.+.|.++++.++.+...+|.++..++-..|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3445677778888888778888888888877777655433
No 471
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=22.67 E-value=5.2e+02 Score=24.93 Aligned_cols=54 Identities=11% Similarity=0.144 Sum_probs=33.8
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 043490 47 HLINMYAKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHGNAEECFRLFCSLLQY 102 (589)
Q Consensus 47 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 102 (589)
.++..+.+..++.+..+.+..+. .+..-...+..+...|++..|+++..+..+.
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~ 156 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQL 156 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33444444444444444444442 3334455678888999999999999887764
No 472
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=22.52 E-value=3.6e+02 Score=20.60 Aligned_cols=62 Identities=16% Similarity=0.104 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC--ChhHHHHHHHHhhhcCChH-HHHHHHHHH
Q 043490 381 DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPG--DSLGFVQMSNIYCLSGSFN-KARLIRKEM 442 (589)
Q Consensus 381 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 442 (589)
|....-.+...+...|+++.|...+-.+.+.++. +...-..|+.++.-.|.-+ -+.+...+|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4566667777888888888888888887776653 4566677777777777644 334444433
No 473
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=22.21 E-value=3.6e+02 Score=20.53 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 043490 237 AVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT 278 (589)
Q Consensus 237 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 278 (589)
++|+.....|+..|..+|..+++...-+=..+...+++..|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 666666777777777777777776666556666666666554
No 474
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=21.85 E-value=2.9e+02 Score=26.19 Aligned_cols=60 Identities=20% Similarity=0.131 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 386 SVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 386 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
..+=.++.+.++++.|....++.+.++|.++.-..--.-+|.+.|...-|.+-++...++
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 344567888899999999999999999999888888888999999999999888875543
No 475
>PF14044 NETI: NETI protein
Probab=21.55 E-value=83 Score=21.53 Aligned_cols=15 Identities=27% Similarity=0.685 Sum_probs=13.1
Q ss_pred HHHHHHHHhCCcccC
Q 043490 483 EELIGQLKGMGYVPE 497 (589)
Q Consensus 483 ~~l~~~m~~~g~~pd 497 (589)
.+.+.+|++.||.|=
T Consensus 11 ~~CL~RM~~eGY~Pv 25 (57)
T PF14044_consen 11 SDCLARMKKEGYMPV 25 (57)
T ss_pred HHHHHHHHHcCCCce
Confidence 567899999999996
No 476
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.31 E-value=1.4e+03 Score=26.98 Aligned_cols=81 Identities=5% Similarity=-0.055 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhC---CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHH
Q 043490 218 TFSIVLKACAGLVTERHASAVHSLIAKYG---FEDDTVIANALIHAYARCGSISLSKQVFDKMTY--HDLVSWNSILKAY 292 (589)
Q Consensus 218 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 292 (589)
-|..+++.+-+.+..+.+.++-..+++.- .+.-..+++.+.+-....|.+-+|.+.+-+.+. +-......++..+
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivL 1064 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVL 1064 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 35666666677777777777766665542 111234556666666677777777666655442 1223445555555
Q ss_pred HHcCCH
Q 043490 293 ALHGQA 298 (589)
Q Consensus 293 ~~~g~~ 298 (589)
+..|..
T Consensus 1065 fecg~l 1070 (1480)
T KOG4521|consen 1065 FECGEL 1070 (1480)
T ss_pred Hhccch
Confidence 555554
No 477
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=21.22 E-value=6.1e+02 Score=22.80 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=23.2
Q ss_pred HhcCCHHHHHHHHhhcC------CCChhHHHHHHH-HHHHcCC--HHHHHHHHHhC
Q 043490 262 ARCGSISLSKQVFDKMT------YHDLVSWNSILK-AYALHGQ--AKEALQLFSNM 308 (589)
Q Consensus 262 ~~~g~~~~A~~~~~~~~------~~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m 308 (589)
...|++++|.+-++.+. +.-...|+.+.. +++.++. +-+|.-++.-.
T Consensus 40 ~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l 95 (204)
T COG2178 40 LHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSIL 95 (204)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 34555666666555553 122334444444 5555554 33555555544
No 478
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.21 E-value=8.8e+02 Score=24.66 Aligned_cols=153 Identities=12% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC------CCChhHHHHHHHHHHHcCCHHHHHHHHHhC------------CCCCCH
Q 043490 253 IANALIHAYARCGSISLSKQVFDKMT------YHDLVSWNSILKAYALHGQAKEALQLFSNM------------NVQPDS 314 (589)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------------~~~p~~ 314 (589)
.+.-+.+-|..||+++.|.+.|.+.. +.-+..|-.+|..-.-.|++......-.+. .+.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-----ccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCC----CHHHH
Q 043490 315 ATFVSLLSACSHAGLVQEGNKVFHSMLENHGV-----VPQLDHYACMVDLLGRVGRILEAEKLIREMPMEP----DSVIW 385 (589)
Q Consensus 315 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p----~~~~~ 385 (589)
..+..+...+.+ .+..|.+.|-........ .|.-.+....+.+++--++-+--+.+.....+++ ++..+
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Q 043490 386 SVLLGSCRKHGETRLAELAATKLK 409 (589)
Q Consensus 386 ~~ll~~~~~~g~~~~a~~~~~~~~ 409 (589)
..+..-|... +.....+++++.
T Consensus 310 ~il~~fy~sk--y~~cl~~L~~~k 331 (466)
T KOG0686|consen 310 EILFKFYSSK--YASCLELLREIK 331 (466)
T ss_pred HHHHHHhhhh--HHHHHHHHHHhc
No 479
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=21.16 E-value=4.1e+02 Score=22.44 Aligned_cols=63 Identities=11% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC
Q 043490 202 FLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCG 265 (589)
Q Consensus 202 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g 265 (589)
++.+.+.+.|++++..-. .++..+.+.++.-.|.++|+.+.+.+...+..|...-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
No 480
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=20.67 E-value=1.7e+02 Score=28.29 Aligned_cols=30 Identities=3% Similarity=-0.072 Sum_probs=19.7
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCChhHHHH
Q 043490 392 CRKHGETRLAELAATKLKQLEPGDSLGFVQ 421 (589)
Q Consensus 392 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 421 (589)
+..+++++.+..+|.+.++++|.+|..|..
T Consensus 152 ~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 152 LFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred hhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 345666777777777777777766666543
No 481
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=20.34 E-value=1.1e+03 Score=25.37 Aligned_cols=41 Identities=5% Similarity=0.021 Sum_probs=25.3
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhCCCCC-hhHHHHHHHHH
Q 043490 137 HVYVANALINMYSKSCADEAWKVFENMEFRN-VISWNSMIAAF 178 (589)
Q Consensus 137 ~~~~~~~li~~y~~g~~~~A~~lf~~m~~~~-~~~~~~li~~~ 178 (589)
....++.|+.....-+.++-..+++++.. . ...|..++++.
T Consensus 309 ~~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal 350 (574)
T smart00638 309 AAAKFLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAV 350 (574)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHH
Confidence 34455666665555555666666666544 3 56777788887
No 482
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=20.33 E-value=1.3e+03 Score=26.10 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=18.2
Q ss_pred HHHHHHHHh-----hhcCChHHHHHHHHHHhc
Q 043490 418 GFVQMSNIY-----CLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 418 ~~~~l~~~~-----~~~g~~~~a~~~~~~m~~ 444 (589)
++..|+..+ ...|.|++|.++++.+.-
T Consensus 704 t~~lLl~~~~~f~~y~~~~~e~aL~~le~l~L 735 (835)
T KOG2168|consen 704 TLSLLLDLVSFFDLYHNGEWEEALSILEHLDL 735 (835)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 455555543 467889999888887653
No 483
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.20 E-value=1e+02 Score=30.10 Aligned_cols=115 Identities=15% Similarity=0.095 Sum_probs=68.8
Q ss_pred cCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 043490 327 AGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELA 404 (589)
Q Consensus 327 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 404 (589)
.|.++.|++.|...++. -.|....|.--.+.+.+.++...|++=+... .+.|| ..-|-.--.+-+..|++++|...
T Consensus 127 ~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred Ccchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 45566666666554422 1223334444455666666666666666555 44555 33344444555667888888888
Q ss_pred HHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 405 ATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 405 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
++...+++- +..+-..|-...-.++..++-...+++.++
T Consensus 205 l~~a~kld~-dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 205 LALACKLDY-DEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHhccc-cHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 888888775 445555666666677777666666655543
No 484
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=20.08 E-value=8.2e+02 Score=23.86 Aligned_cols=12 Identities=8% Similarity=0.130 Sum_probs=7.3
Q ss_pred HHHHHHHHhhcC
Q 043490 267 ISLSKQVFDKMT 278 (589)
Q Consensus 267 ~~~A~~~~~~~~ 278 (589)
.+.|..+|.++.
T Consensus 143 ~e~A~~iyk~~~ 154 (310)
T PRK00423 143 REEAAVIYRKAV 154 (310)
T ss_pred HHHHHHHHHHHH
Confidence 456666666654
No 485
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=20.04 E-value=8.2e+02 Score=23.85 Aligned_cols=42 Identities=2% Similarity=-0.036 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 043490 237 AVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT 278 (589)
Q Consensus 237 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 278 (589)
++|+.+...++.|.-+.+.-+.-++...=.+.+...+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344444444444444444444444444444444444444443
No 486
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=20.02 E-value=2.3e+02 Score=20.17 Aligned_cols=50 Identities=10% Similarity=-0.131 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Q 043490 213 APDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYAR 263 (589)
Q Consensus 213 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~ 263 (589)
.|+...++.++..+++....+.+...+..+.+.|. .+..+|.--+..+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 45566677777777777777888888888877773 455555555555444
Done!