Query 043490
Match_columns 589
No_of_seqs 758 out of 4328
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 09:13:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.2E-38 2.8E-42 336.8 40.3 422 3-446 115-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.4E-34 1.5E-38 307.7 30.5 420 3-446 82-546 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.7E-26 1.3E-30 232.0 40.7 370 11-431 5-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 4.7E-28 1.6E-32 251.3 22.4 195 155-363 8-223 (501)
5 4g26_A Pentatricopeptide repea 100.0 2.7E-27 9.2E-32 245.5 21.9 196 199-395 8-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.1E-24 3.8E-29 221.1 37.3 348 48-445 5-368 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.4E-22 5E-27 209.6 30.1 344 24-441 11-405 (450)
8 2gw1_A Mitochondrial precursor 99.9 6.3E-22 2.2E-26 208.3 32.8 421 5-446 6-479 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 4.7E-21 1.6E-25 198.2 32.9 370 4-433 25-442 (450)
10 3fp2_A TPR repeat-containing p 99.9 5.9E-21 2E-25 202.2 33.6 427 5-446 25-492 (537)
11 2gw1_A Mitochondrial precursor 99.9 1.8E-20 6.1E-25 197.2 30.2 402 2-422 36-489 (514)
12 3fp2_A TPR repeat-containing p 99.9 4.5E-19 1.6E-23 187.7 32.9 394 3-420 57-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 4.2E-18 1.4E-22 169.9 31.6 307 72-428 2-352 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 2.7E-17 9.1E-22 164.0 34.5 292 137-446 2-336 (359)
15 3hym_B Cell division cycle pro 99.8 2.4E-17 8.2E-22 162.4 29.0 285 134-433 18-322 (330)
16 1b89_A Protein (clathrin heavy 99.8 6.7E-18 2.3E-22 167.2 22.1 345 17-443 15-370 (449)
17 2ooe_A Cleavage stimulation fa 99.8 8.8E-16 3E-20 162.2 37.7 404 4-445 12-492 (530)
18 1fch_A Peroxisomal targeting s 99.8 3.3E-17 1.1E-21 164.4 23.1 276 148-441 35-355 (368)
19 3hym_B Cell division cycle pro 99.8 1.5E-16 5E-21 156.8 26.8 262 166-445 20-299 (330)
20 1b89_A Protein (clathrin heavy 99.8 2.3E-18 7.8E-23 170.5 10.9 301 53-427 14-339 (449)
21 2ooe_A Cleavage stimulation fa 99.7 8E-15 2.7E-19 154.9 35.5 376 28-446 2-455 (530)
22 4eqf_A PEX5-related protein; a 99.7 1.1E-16 3.9E-21 160.4 20.0 258 167-441 64-352 (365)
23 2xm6_A Protein corresponding t 99.7 1.5E-14 5.1E-19 151.2 36.8 266 138-427 147-451 (490)
24 3mkr_A Coatomer subunit epsilo 99.7 2.8E-15 9.4E-20 145.0 28.3 267 148-439 10-288 (291)
25 1fch_A Peroxisomal targeting s 99.7 1.5E-16 5.1E-21 159.6 17.9 253 192-445 36-314 (368)
26 4eqf_A PEX5-related protein; a 99.7 3.7E-16 1.3E-20 156.7 20.5 230 215-445 64-310 (365)
27 1xi4_A Clathrin heavy chain; a 99.7 1.8E-13 6.2E-18 150.6 42.2 379 7-437 987-1376(1630)
28 4g1t_A Interferon-induced prot 99.7 4.8E-15 1.6E-19 154.1 28.6 367 40-455 49-469 (472)
29 3cv0_A Peroxisome targeting si 99.7 7.9E-16 2.7E-20 151.3 21.5 258 168-442 21-312 (327)
30 2xm6_A Protein corresponding t 99.7 1.5E-13 5.1E-18 143.6 38.4 349 40-447 37-434 (490)
31 3mkr_A Coatomer subunit epsilo 99.7 5.6E-15 1.9E-19 142.8 22.3 243 192-446 10-265 (291)
32 3spa_A Mtrpol, DNA-directed RN 99.7 5.3E-17 1.8E-21 173.1 8.6 150 134-296 123-286 (1134)
33 3cv0_A Peroxisome targeting si 99.7 1.8E-14 6.3E-19 141.4 24.5 266 5-307 21-311 (327)
34 4g1t_A Interferon-induced prot 99.6 1.8E-14 6.1E-19 149.7 24.3 364 5-422 51-470 (472)
35 3spa_A Mtrpol, DNA-directed RN 99.6 1.6E-16 5.3E-21 169.5 6.9 146 213-364 124-286 (1134)
36 1xnf_A Lipoprotein NLPI; TPR, 99.6 6E-14 2E-18 134.2 21.4 241 192-439 16-269 (275)
37 3uq3_A Heat shock protein STI1 99.6 5.7E-14 1.9E-18 132.8 20.7 218 217-445 6-236 (258)
38 2pl2_A Hypothetical conserved 99.6 4E-14 1.4E-18 130.5 19.0 193 248-443 2-212 (217)
39 3uq3_A Heat shock protein STI1 99.6 1.6E-13 5.6E-18 129.6 19.9 232 169-424 6-255 (258)
40 1xi4_A Clathrin heavy chain; a 99.5 5.6E-11 1.9E-15 131.2 40.3 311 8-402 1052-1375(1630)
41 3u4t_A TPR repeat-containing p 99.5 6E-13 2E-17 127.0 22.0 234 192-429 14-268 (272)
42 3e4b_A ALGK; tetratricopeptide 99.5 1.2E-12 4.2E-17 134.7 20.8 371 11-444 9-420 (452)
43 2ho1_A Type 4 fimbrial biogene 99.5 4.5E-12 1.5E-16 119.4 22.9 198 217-417 38-244 (252)
44 2vq2_A PILW, putative fimbrial 99.5 2.1E-12 7.1E-17 119.1 20.0 194 250-444 7-210 (225)
45 2h6f_A Protein farnesyltransfe 99.5 2.2E-12 7.5E-17 129.0 20.6 242 168-427 97-364 (382)
46 2q7f_A YRRB protein; TPR, prot 99.5 8E-13 2.7E-17 123.7 16.4 206 215-423 22-234 (243)
47 2ho1_A Type 4 fimbrial biogene 99.5 2E-12 6.7E-17 121.9 19.2 195 251-446 37-239 (252)
48 2pl2_A Hypothetical conserved 99.5 9.7E-13 3.3E-17 121.2 15.8 193 213-409 2-212 (217)
49 2vq2_A PILW, putative fimbrial 99.5 1.3E-11 4.4E-16 113.7 23.0 205 215-422 7-222 (225)
50 3u4t_A TPR repeat-containing p 99.4 1.2E-11 4E-16 118.0 22.1 236 141-390 6-263 (272)
51 2q7f_A YRRB protein; TPR, prot 99.4 1.7E-12 5.8E-17 121.4 15.9 196 249-446 21-223 (243)
52 4a1s_A PINS, partner of inscut 99.4 1.4E-12 4.8E-17 132.7 16.3 252 192-444 59-371 (411)
53 3ro2_A PINS homolog, G-protein 99.4 4.4E-12 1.5E-16 124.5 19.4 253 192-445 16-332 (338)
54 3sf4_A G-protein-signaling mod 99.4 5.6E-12 1.9E-16 127.7 20.6 252 192-444 20-335 (406)
55 4abn_A Tetratricopeptide repea 99.4 1.5E-12 5.2E-17 134.9 16.7 207 232-442 84-318 (474)
56 2h6f_A Protein farnesyltransfe 99.4 2.3E-12 7.8E-17 128.9 17.0 224 217-445 98-348 (382)
57 1xnf_A Lipoprotein NLPI; TPR, 99.4 3E-12 1E-16 122.2 17.0 237 148-405 15-269 (275)
58 1ouv_A Conserved hypothetical 99.4 5.9E-11 2E-15 113.4 25.1 223 215-447 5-253 (273)
59 1ouv_A Conserved hypothetical 99.4 6.6E-11 2.3E-15 113.0 25.3 224 167-415 5-255 (273)
60 4e6h_A MRNA 3'-END-processing 99.4 2.6E-09 8.9E-14 114.0 38.3 403 3-426 64-584 (679)
61 3vtx_A MAMA; tetratricopeptide 99.4 1.3E-11 4.4E-16 110.2 17.7 164 281-446 4-171 (184)
62 3sf4_A G-protein-signaling mod 99.4 1.1E-11 3.8E-16 125.4 17.9 285 136-433 7-364 (406)
63 3e4b_A ALGK; tetratricopeptide 99.3 1.8E-10 6.1E-15 118.6 24.7 308 79-447 9-353 (452)
64 4a1s_A PINS, partner of inscut 99.3 1.2E-11 4E-16 125.8 14.4 260 141-413 51-374 (411)
65 3vtx_A MAMA; tetratricopeptide 99.3 4E-11 1.4E-15 107.0 15.8 165 249-415 3-174 (184)
66 2ond_A Cleavage stimulation fa 99.3 6.6E-10 2.3E-14 108.2 25.4 215 198-415 33-274 (308)
67 2ond_A Cleavage stimulation fa 99.3 1.5E-10 5.2E-15 112.7 20.3 211 233-447 33-272 (308)
68 3ulq_A Response regulator aspa 99.3 6E-11 2E-15 119.5 17.8 222 222-444 109-367 (383)
69 3ulq_A Response regulator aspa 99.3 1.9E-10 6.3E-15 115.9 21.0 221 192-412 114-369 (383)
70 3ro2_A PINS homolog, G-protein 99.3 5.5E-11 1.9E-15 116.6 16.3 258 143-413 10-334 (338)
71 3nf1_A KLC 1, kinesin light ch 99.3 4.1E-12 1.4E-16 123.5 7.5 229 216-444 27-306 (311)
72 4gyw_A UDP-N-acetylglucosamine 99.3 3.7E-11 1.3E-15 129.7 15.4 159 282-443 9-172 (723)
73 3as5_A MAMA; tetratricopeptide 99.3 4.6E-10 1.6E-14 99.5 19.2 160 284-445 10-173 (186)
74 3nf1_A KLC 1, kinesin light ch 99.2 1.6E-11 5.4E-16 119.3 9.8 234 168-414 27-310 (311)
75 4e6h_A MRNA 3'-END-processing 99.2 1.8E-08 6E-13 107.6 33.9 416 23-447 50-572 (679)
76 4abn_A Tetratricopeptide repea 99.2 2E-10 7E-15 118.9 16.6 207 196-407 83-317 (474)
77 1hz4_A MALT regulatory protein 99.2 8.5E-09 2.9E-13 103.1 27.9 253 192-444 25-321 (373)
78 4i17_A Hypothetical protein; T 99.2 8E-10 2.7E-14 102.3 18.8 203 214-426 5-224 (228)
79 3q15_A PSP28, response regulat 99.2 7.9E-10 2.7E-14 111.0 18.0 300 135-444 7-364 (378)
80 3as5_A MAMA; tetratricopeptide 99.2 1.6E-09 5.5E-14 96.0 17.6 165 251-417 8-179 (186)
81 3q15_A PSP28, response regulat 99.1 5.7E-09 2E-13 104.7 22.9 220 192-411 112-365 (378)
82 1hz4_A MALT regulatory protein 99.1 9.4E-08 3.2E-12 95.5 29.6 117 192-308 146-279 (373)
83 4gyw_A UDP-N-acetylglucosamine 99.1 7E-10 2.4E-14 119.8 13.0 162 248-412 6-175 (723)
84 3edt_B KLC 2, kinesin light ch 99.1 3E-09 1E-13 101.3 16.2 144 199-342 26-197 (283)
85 3edt_B KLC 2, kinesin light ch 99.0 6.9E-10 2.4E-14 105.8 10.9 217 228-444 13-280 (283)
86 1qqe_A Vesicular transport pro 99.0 3.3E-09 1.1E-13 102.3 15.3 187 227-413 48-271 (292)
87 3qky_A Outer membrane assembly 99.0 2.8E-08 9.7E-13 93.9 19.7 203 248-491 12-247 (261)
88 4i17_A Hypothetical protein; T 99.0 6.3E-08 2.2E-12 89.3 21.3 192 167-381 6-212 (228)
89 1qqe_A Vesicular transport pro 99.0 6E-09 2E-13 100.5 13.7 199 231-444 32-268 (292)
90 3qky_A Outer membrane assembly 98.9 1.8E-08 6.3E-13 95.2 16.0 199 214-432 13-248 (261)
91 4ga2_A E3 SUMO-protein ligase 98.9 2.5E-09 8.4E-14 91.8 8.0 138 291-431 6-149 (150)
92 2yhc_A BAMD, UPF0169 lipoprote 98.9 4.7E-08 1.6E-12 90.1 17.0 179 251-447 4-215 (225)
93 2fo7_A Synthetic consensus TPR 98.9 3.2E-08 1.1E-12 82.2 14.2 127 317-445 4-132 (136)
94 3mv2_B Coatomer subunit epsilo 98.9 7.9E-08 2.7E-12 91.3 18.3 172 270-446 85-283 (310)
95 2pzi_A Probable serine/threoni 98.9 7E-09 2.4E-13 112.4 12.4 166 262-431 402-583 (681)
96 3qou_A Protein YBBN; thioredox 98.9 2.3E-08 7.8E-13 96.0 13.5 158 283-443 118-282 (287)
97 2fo7_A Synthetic consensus TPR 98.8 7.8E-08 2.7E-12 79.7 14.2 129 284-414 3-135 (136)
98 3mv2_B Coatomer subunit epsilo 98.8 1.2E-07 4E-12 90.1 16.4 240 146-418 22-289 (310)
99 2r5s_A Uncharacterized protein 98.8 2.9E-07 9.9E-12 81.0 16.8 155 254-443 9-171 (176)
100 2pzi_A Probable serine/threoni 98.8 1.1E-07 3.7E-12 103.0 16.7 186 227-417 402-608 (681)
101 2vsy_A XCC0866; transferase, g 98.8 7E-08 2.4E-12 102.4 14.5 157 264-423 2-169 (568)
102 3urz_A Uncharacterized protein 98.7 2.2E-07 7.5E-12 84.4 14.7 123 288-414 60-189 (208)
103 2ifu_A Gamma-SNAP; membrane fu 98.7 2.1E-07 7.2E-12 90.2 15.4 217 193-437 3-253 (307)
104 4ga2_A E3 SUMO-protein ligase 98.7 2.8E-08 9.7E-13 85.1 7.9 122 320-444 3-128 (150)
105 3urz_A Uncharacterized protein 98.7 4.2E-07 1.4E-11 82.5 16.2 174 192-389 15-197 (208)
106 2vsy_A XCC0866; transferase, g 98.7 2E-07 6.9E-12 98.9 16.0 144 229-376 2-154 (568)
107 3gyz_A Chaperone protein IPGC; 98.7 8.2E-08 2.8E-12 82.0 9.7 97 350-446 36-134 (151)
108 3qou_A Protein YBBN; thioredox 98.7 6.7E-07 2.3E-11 85.7 17.1 157 217-374 118-279 (287)
109 2uy1_A Cleavage stimulation fa 98.6 5.9E-05 2E-09 77.9 32.3 208 198-443 196-411 (493)
110 2c2l_A CHIP, carboxy terminus 98.6 2.5E-07 8.7E-12 88.4 13.4 190 250-445 3-199 (281)
111 2yhc_A BAMD, UPF0169 lipoprote 98.6 8.5E-07 2.9E-11 81.6 16.5 183 215-416 3-218 (225)
112 4gco_A Protein STI-1; structur 98.6 3.3E-07 1.1E-11 75.7 11.9 113 310-425 8-124 (126)
113 3rjv_A Putative SEL1 repeat pr 98.6 1.2E-06 4.2E-11 79.6 16.8 160 281-447 17-199 (212)
114 3dra_A Protein farnesyltransfe 98.6 3.2E-06 1.1E-10 81.0 20.3 208 234-444 51-286 (306)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.6 6.7E-07 2.3E-11 81.2 14.6 125 318-447 10-152 (213)
116 2vgx_A Chaperone SYCD; alterna 98.6 1.2E-07 4E-12 80.9 8.9 97 349-445 20-118 (148)
117 3u3w_A Transcriptional activat 98.6 4.8E-06 1.6E-10 79.9 21.3 156 288-443 81-264 (293)
118 3dra_A Protein farnesyltransfe 98.6 1.7E-05 5.8E-10 75.9 24.5 227 192-424 44-301 (306)
119 4gco_A Protein STI-1; structur 98.6 2.9E-07 9.9E-12 76.0 9.7 100 346-445 8-110 (126)
120 2r5s_A Uncharacterized protein 98.5 5.9E-07 2E-11 79.0 12.0 152 220-375 10-169 (176)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2.6E-06 8.9E-11 77.2 16.4 143 254-415 9-154 (213)
122 2qfc_A PLCR protein; TPR, HTH, 98.5 3.1E-06 1.1E-10 81.3 17.3 159 285-443 78-264 (293)
123 3rjv_A Putative SEL1 repeat pr 98.5 5.9E-06 2E-10 75.1 18.2 135 199-340 4-155 (212)
124 1a17_A Serine/threonine protei 98.5 1.3E-06 4.5E-11 75.5 12.7 126 316-443 15-144 (166)
125 4f3v_A ESX-1 secretion system 98.5 6.8E-07 2.3E-11 83.7 11.2 135 285-422 105-247 (282)
126 1na0_A Designed protein CTPR3; 98.5 2.9E-06 9.9E-11 69.0 13.8 114 315-430 10-125 (125)
127 2xcb_A PCRH, regulatory protei 98.5 1.1E-06 3.6E-11 74.3 11.2 95 351-445 19-115 (142)
128 1p5q_A FKBP52, FK506-binding p 98.5 8.1E-07 2.8E-11 87.2 11.6 93 351-443 197-292 (336)
129 2uy1_A Cleavage stimulation fa 98.5 9.6E-06 3.3E-10 83.8 20.1 204 231-442 152-380 (493)
130 2vyi_A SGTA protein; chaperone 98.4 1.7E-06 5.8E-11 71.1 11.5 117 314-432 12-130 (131)
131 2qfc_A PLCR protein; TPR, HTH, 98.4 4.9E-06 1.7E-10 79.9 16.3 160 252-411 76-266 (293)
132 2ifu_A Gamma-SNAP; membrane fu 98.4 7.6E-07 2.6E-11 86.3 10.5 193 228-443 3-222 (307)
133 2lni_A Stress-induced-phosphop 98.4 1.7E-06 5.7E-11 71.5 11.0 114 315-431 17-133 (133)
134 2kck_A TPR repeat; tetratricop 98.4 3.7E-06 1.3E-10 66.9 12.2 99 349-447 5-108 (112)
135 2fbn_A 70 kDa peptidylprolyl i 98.4 2.9E-07 9.9E-12 82.8 6.1 96 351-446 89-187 (198)
136 4f3v_A ESX-1 secretion system 98.4 4.6E-06 1.6E-10 78.1 13.9 181 263-446 18-238 (282)
137 1hxi_A PEX5, peroxisome target 98.4 1.3E-06 4.5E-11 71.4 9.1 96 351-446 18-115 (121)
138 3gyz_A Chaperone protein IPGC; 98.4 1.4E-06 4.8E-11 74.3 9.2 104 309-415 30-137 (151)
139 3u3w_A Transcriptional activat 98.4 8.7E-05 3E-09 71.0 22.9 199 204-411 34-266 (293)
140 3upv_A Heat shock protein STI1 98.3 2E-06 6.7E-11 70.8 9.6 94 352-445 6-101 (126)
141 2e2e_A Formate-dependent nitri 98.3 1.3E-06 4.4E-11 76.8 8.8 120 325-446 21-145 (177)
142 2vgx_A Chaperone SYCD; alterna 98.3 2E-06 6.9E-11 73.1 9.0 111 305-418 10-125 (148)
143 3gw4_A Uncharacterized protein 98.3 4.9E-06 1.7E-10 74.6 11.9 58 283-340 27-92 (203)
144 2c2l_A CHIP, carboxy terminus 98.3 3.9E-06 1.3E-10 80.0 11.6 190 215-412 3-200 (281)
145 3q49_B STIP1 homology and U bo 98.3 4.8E-06 1.7E-10 69.3 10.7 97 349-445 8-106 (137)
146 2xcb_A PCRH, regulatory protei 98.3 3.5E-06 1.2E-10 71.0 9.6 116 304-422 6-126 (142)
147 3sz7_A HSC70 cochaperone (SGT) 98.3 3.3E-06 1.1E-10 73.1 9.6 95 351-445 12-108 (164)
148 2dba_A Smooth muscle cell asso 98.3 1.6E-05 5.4E-10 67.0 13.6 112 314-428 28-145 (148)
149 3q7a_A Farnesyltransferase alp 98.3 8.7E-05 3E-09 71.8 20.0 209 233-444 71-330 (349)
150 1elw_A TPR1-domain of HOP; HOP 98.2 1.2E-05 4.2E-10 64.4 12.0 109 315-425 5-115 (118)
151 1na0_A Designed protein CTPR3; 98.2 1E-05 3.5E-10 65.6 11.5 97 350-446 9-107 (125)
152 1a17_A Serine/threonine protei 98.2 1.2E-05 4.1E-10 69.2 12.5 91 316-408 49-143 (166)
153 2lni_A Stress-induced-phosphop 98.2 7.2E-06 2.4E-10 67.6 10.4 97 349-445 15-113 (133)
154 1elw_A TPR1-domain of HOP; HOP 98.2 1.1E-05 3.7E-10 64.7 10.9 97 350-446 4-102 (118)
155 3q7a_A Farnesyltransferase alp 98.2 0.00043 1.5E-08 67.0 23.5 225 192-422 65-343 (349)
156 3upv_A Heat shock protein STI1 98.2 1.3E-05 4.3E-10 65.8 11.1 109 315-426 5-122 (126)
157 2dba_A Smooth muscle cell asso 98.2 1.5E-05 5.1E-10 67.1 11.8 97 349-445 27-128 (148)
158 4gcn_A Protein STI-1; structur 98.2 5.4E-06 1.9E-10 68.3 8.5 93 352-444 10-111 (127)
159 3gw4_A Uncharacterized protein 98.2 1.4E-05 4.7E-10 71.6 11.7 113 151-276 6-132 (203)
160 4b4t_Q 26S proteasome regulato 98.1 5.8E-05 2E-09 76.6 17.5 160 284-443 57-243 (434)
161 3sz7_A HSC70 cochaperone (SGT) 98.1 1.9E-05 6.5E-10 68.2 11.5 106 314-422 11-119 (164)
162 3dss_A Geranylgeranyl transfer 98.1 0.0005 1.7E-08 66.2 22.1 223 192-421 40-314 (331)
163 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1.8E-05 6.1E-10 81.2 12.6 95 350-444 317-414 (457)
164 2vyi_A SGTA protein; chaperone 98.1 1.6E-05 5.5E-10 65.0 10.0 97 349-445 11-109 (131)
165 2e2e_A Formate-dependent nitri 98.1 1.6E-05 5.6E-10 69.6 10.5 112 229-341 23-142 (177)
166 2xev_A YBGF; tetratricopeptide 98.1 1.8E-05 6.3E-10 64.9 9.5 91 355-445 7-105 (129)
167 3q49_B STIP1 homology and U bo 98.1 2.5E-05 8.6E-10 64.8 10.4 100 313-414 8-109 (137)
168 3k9i_A BH0479 protein; putativ 98.0 5.4E-06 1.8E-10 67.1 5.5 82 363-444 3-89 (117)
169 3dss_A Geranylgeranyl transfer 98.0 0.00057 1.9E-08 65.8 20.3 212 232-446 46-305 (331)
170 2hr2_A Hypothetical protein; a 98.0 2.3E-05 7.8E-10 66.3 9.1 63 382-444 57-130 (159)
171 1wao_1 Serine/threonine protei 98.0 1.2E-05 4.1E-10 82.9 8.7 116 322-440 14-134 (477)
172 2xev_A YBGF; tetratricopeptide 98.0 0.00012 4E-09 59.9 13.1 101 319-422 7-116 (129)
173 4gcn_A Protein STI-1; structur 98.0 3.1E-05 1E-09 63.7 9.3 88 254-341 11-110 (127)
174 1p5q_A FKBP52, FK506-binding p 98.0 8.1E-05 2.8E-09 72.8 14.0 158 151-342 127-293 (336)
175 3rkv_A Putative peptidylprolyl 98.0 2.8E-05 9.7E-10 66.9 9.3 64 382-445 63-126 (162)
176 1ihg_A Cyclophilin 40; ppiase 98.0 5.2E-05 1.8E-09 75.2 12.3 89 349-437 272-362 (370)
177 1elr_A TPR2A-domain of HOP; HO 97.9 3.4E-05 1.2E-09 63.1 9.2 94 352-445 6-108 (131)
178 3ro3_A PINS homolog, G-protein 97.9 5.9E-05 2E-09 64.2 11.1 128 317-444 12-157 (164)
179 1elr_A TPR2A-domain of HOP; HO 97.9 2.9E-05 9.9E-10 63.5 8.7 109 316-427 6-123 (131)
180 2kck_A TPR repeat; tetratricop 97.9 3.6E-05 1.2E-09 60.9 8.9 100 315-416 7-111 (112)
181 3n71_A Histone lysine methyltr 97.9 0.00012 4E-09 75.1 14.4 123 324-446 319-465 (490)
182 1hxi_A PEX5, peroxisome target 97.9 4.5E-05 1.5E-09 62.1 9.0 96 317-415 20-118 (121)
183 4b4t_Q 26S proteasome regulato 97.9 0.0002 7E-09 72.5 16.0 185 192-376 15-242 (434)
184 1wao_1 Serine/threonine protei 97.9 5.7E-05 1.9E-09 77.8 11.8 115 257-374 12-134 (477)
185 3ro3_A PINS homolog, G-protein 97.9 5.6E-05 1.9E-09 64.3 9.6 60 352-411 91-158 (164)
186 2fbn_A 70 kDa peptidylprolyl i 97.9 3.9E-05 1.3E-09 68.6 8.5 151 151-334 18-176 (198)
187 2hr2_A Hypothetical protein; a 97.8 2.8E-05 9.4E-10 65.8 6.5 68 352-419 59-139 (159)
188 2if4_A ATFKBP42; FKBP-like, al 97.8 1.9E-05 6.4E-10 77.4 6.2 146 283-446 180-329 (338)
189 3rkv_A Putative peptidylprolyl 97.8 6.4E-05 2.2E-09 64.7 8.8 73 350-422 63-138 (162)
190 3k9i_A BH0479 protein; putativ 97.8 2.4E-05 8.3E-10 63.2 5.3 92 327-418 3-97 (117)
191 2l6j_A TPR repeat-containing p 97.8 8.9E-06 3E-10 64.7 2.4 91 350-440 4-102 (111)
192 1dce_A Protein (RAB geranylger 97.7 0.0011 3.6E-08 69.6 17.9 165 267-434 45-244 (567)
193 2if4_A ATFKBP42; FKBP-like, al 97.7 6.2E-05 2.1E-09 73.7 7.5 149 251-416 179-333 (338)
194 2kat_A Uncharacterized protein 97.7 0.00012 3.9E-09 58.8 7.9 78 368-445 3-82 (115)
195 1na3_A Designed protein CTPR2; 97.6 0.00023 7.8E-09 53.9 8.7 80 351-430 10-91 (91)
196 3ma5_A Tetratricopeptide repea 97.6 0.00024 8.1E-09 55.4 8.8 64 381-444 6-69 (100)
197 3n71_A Histone lysine methyltr 97.5 0.00041 1.4E-08 71.0 11.3 114 359-490 318-449 (490)
198 3qwp_A SET and MYND domain-con 97.5 0.00052 1.8E-08 69.2 11.0 116 357-490 294-427 (429)
199 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.0012 4.2E-08 67.4 13.9 140 168-341 268-413 (457)
200 1ihg_A Cyclophilin 40; ppiase 97.4 0.00036 1.2E-08 69.1 9.4 65 381-445 272-336 (370)
201 1zu2_A Mitochondrial import re 97.4 8.3E-05 2.8E-09 62.7 3.9 86 361-446 13-121 (158)
202 3bee_A Putative YFRE protein; 97.4 0.0013 4.3E-08 50.3 9.5 69 380-448 4-75 (93)
203 2l6j_A TPR repeat-containing p 97.3 0.00084 2.9E-08 52.9 8.4 67 380-446 2-68 (111)
204 1klx_A Cysteine rich protein B 97.2 0.0052 1.8E-07 50.9 12.0 112 328-447 9-128 (138)
205 1zu2_A Mitochondrial import re 97.2 0.00047 1.6E-08 58.1 5.4 86 328-416 16-125 (158)
206 1na3_A Designed protein CTPR2; 97.1 0.002 7E-08 48.4 8.0 64 382-445 9-72 (91)
207 3qww_A SET and MYND domain-con 97.1 0.0016 5.6E-08 65.5 9.4 83 362-444 310-410 (433)
208 1klx_A Cysteine rich protein B 97.1 0.013 4.3E-07 48.5 13.4 106 195-308 9-123 (138)
209 1dce_A Protein (RAB geranylger 97.0 0.051 1.7E-06 56.9 20.6 167 193-365 41-241 (567)
210 2kat_A Uncharacterized protein 96.9 0.0023 7.9E-08 50.9 7.7 78 333-413 4-84 (115)
211 3qww_A SET and MYND domain-con 96.9 0.0056 1.9E-07 61.5 11.9 93 327-419 311-424 (433)
212 3qwp_A SET and MYND domain-con 96.9 0.01 3.5E-07 59.7 13.2 100 321-420 294-414 (429)
213 3mkq_A Coatomer beta'-subunit; 96.8 0.044 1.5E-06 60.2 19.3 110 51-206 608-719 (814)
214 3ly7_A Transcriptional activat 96.7 0.036 1.2E-06 53.5 14.7 45 280-324 192-243 (372)
215 2kc7_A BFR218_protein; tetratr 96.7 0.0077 2.6E-07 46.1 8.4 79 356-442 6-87 (99)
216 3ma5_A Tetratricopeptide repea 96.5 0.0079 2.7E-07 46.4 7.5 62 4-68 6-67 (100)
217 2kc7_A BFR218_protein; tetratr 96.5 0.0069 2.4E-07 46.4 7.0 59 388-446 6-65 (99)
218 1wy6_A Hypothetical protein ST 96.4 0.16 5.4E-06 40.7 14.0 139 294-448 19-157 (172)
219 3mkq_A Coatomer beta'-subunit; 96.4 0.048 1.6E-06 59.9 16.0 48 51-100 661-708 (814)
220 1pc2_A Mitochondria fission pr 96.2 0.027 9.4E-07 46.7 9.6 66 380-445 30-100 (152)
221 3ly7_A Transcriptional activat 95.9 0.074 2.5E-06 51.4 12.0 149 213-385 191-346 (372)
222 3u64_A Protein TP_0956; tetrat 95.7 0.044 1.5E-06 50.8 9.3 86 366-451 179-275 (301)
223 2v5f_A Prolyl 4-hydroxylase su 95.5 0.067 2.3E-06 41.5 8.6 68 355-422 10-86 (104)
224 3bee_A Putative YFRE protein; 95.5 0.051 1.8E-06 41.2 7.5 66 349-414 5-75 (93)
225 3mkq_B Coatomer subunit alpha; 95.4 0.14 4.8E-06 43.7 10.6 51 49-101 12-62 (177)
226 3mkq_B Coatomer subunit alpha; 95.0 0.88 3E-05 38.7 14.5 129 259-408 13-141 (177)
227 1qsa_A Protein (soluble lytic 94.9 4.3 0.00015 42.5 24.8 111 297-410 229-347 (618)
228 1pc2_A Mitochondria fission pr 94.4 0.15 5E-06 42.4 8.0 89 329-419 13-108 (152)
229 1nzn_A CGI-135 protein, fissio 93.8 0.35 1.2E-05 38.6 8.7 65 380-444 33-102 (126)
230 3u64_A Protein TP_0956; tetrat 93.6 0.36 1.2E-05 44.7 9.7 111 263-376 133-266 (301)
231 2v5f_A Prolyl 4-hydroxylase su 93.2 0.4 1.4E-05 36.9 8.2 65 381-445 4-75 (104)
232 4gns_B Protein CSD3, chitin bi 92.0 0.79 2.7E-05 48.9 11.0 54 390-443 345-398 (754)
233 3lvg_A Clathrin heavy chain 1; 91.8 0.0004 1.4E-08 68.4 -13.0 240 167-437 53-325 (624)
234 1nzn_A CGI-135 protein, fissio 91.4 2 6.8E-05 34.2 10.1 91 328-420 15-112 (126)
235 1wy6_A Hypothetical protein ST 91.2 4.9 0.00017 32.3 14.3 137 192-346 18-156 (172)
236 1y8m_A FIS1; mitochondria, unk 91.0 5.4 0.00018 32.4 13.2 67 379-445 36-106 (144)
237 3lpz_A GET4 (YOR164C homolog); 89.1 15 0.00052 34.7 21.7 160 171-342 38-215 (336)
238 4h7y_A Dual specificity protei 88.9 3.9 0.00013 33.5 9.9 55 364-419 74-131 (161)
239 2ff4_A Probable regulatory pro 87.8 1.5 5.3E-05 43.0 8.6 69 384-452 173-246 (388)
240 2qx5_A Nucleoporin NIC96; mRNA 87.6 12 0.00042 39.2 15.5 78 192-280 305-385 (661)
241 3txn_A 26S proteasome regulato 87.5 22 0.00076 34.6 16.4 88 355-442 104-207 (394)
242 2p58_C Putative type III secre 87.1 7.6 0.00026 29.1 9.5 56 148-219 50-106 (116)
243 4h7y_A Dual specificity protei 86.9 1.1 3.7E-05 36.8 5.5 55 394-448 72-126 (161)
244 2uwj_G Type III export protein 86.3 7.2 0.00025 29.2 9.0 56 148-219 49-105 (115)
245 2wpv_A GET4, UPF0363 protein Y 86.2 22 0.00076 33.3 21.4 161 171-343 36-217 (312)
246 2p58_C Putative type III secre 86.2 8.8 0.0003 28.8 9.4 86 230-319 21-108 (116)
247 4b4t_P 26S proteasome regulato 85.9 28 0.00097 34.6 16.8 180 195-376 30-244 (445)
248 2uwj_G Type III export protein 83.8 8.3 0.00028 28.9 8.4 86 230-319 20-107 (115)
249 3o48_A Mitochondria fission 1 83.6 7.4 0.00025 31.1 8.8 67 379-445 37-107 (134)
250 3lvg_A Clathrin heavy chain 1; 83.3 0.0033 1.1E-07 62.1 -12.7 189 218-429 56-276 (624)
251 1v54_E Cytochrome C oxidase po 83.1 7 0.00024 29.4 7.9 49 375-423 38-86 (109)
252 3ffl_A Anaphase-promoting comp 82.4 10 0.00035 31.7 9.6 25 316-340 65-89 (167)
253 3ffl_A Anaphase-promoting comp 81.6 11 0.00039 31.4 9.6 113 316-442 22-148 (167)
254 2ff4_A Probable regulatory pro 81.5 3.7 0.00013 40.3 8.0 66 288-353 177-248 (388)
255 1v54_E Cytochrome C oxidase po 80.5 9.1 0.00031 28.8 7.7 63 196-259 25-87 (109)
256 1zbp_A Hypothetical protein VP 80.5 6.7 0.00023 35.7 8.5 111 322-444 5-128 (273)
257 4gns_B Protein CSD3, chitin bi 80.4 12 0.00043 39.8 11.9 117 192-308 259-397 (754)
258 1qsa_A Protein (soluble lytic 79.4 64 0.0022 33.6 38.3 376 43-450 73-484 (618)
259 4fhn_B Nucleoporin NUP120; pro 77.3 17 0.00057 41.4 12.7 187 255-442 816-1047(1139)
260 4fhn_B Nucleoporin NUP120; pro 76.5 11 0.00038 42.9 10.9 123 320-448 818-970 (1139)
261 2y69_E Cytochrome C oxidase su 72.3 19 0.00066 28.7 7.9 50 374-423 80-129 (152)
262 2y69_E Cytochrome C oxidase su 71.9 18 0.00063 28.9 7.7 62 197-259 69-130 (152)
263 3ltm_A Alpha-REP4; protein eng 71.4 49 0.0017 28.4 17.5 170 40-264 31-201 (211)
264 3o48_A Mitochondria fission 1 71.2 27 0.00091 27.9 8.7 71 348-418 38-114 (134)
265 4b4t_P 26S proteasome regulato 69.1 94 0.0032 30.8 17.7 181 230-410 30-246 (445)
266 3ltj_A Alpharep-4; protein eng 68.8 54 0.0018 27.9 16.8 60 40-100 26-85 (201)
267 1y8m_A FIS1; mitochondria, unk 68.7 45 0.0015 27.0 10.2 71 348-418 37-113 (144)
268 1zbp_A Hypothetical protein VP 66.7 12 0.00041 34.1 6.5 57 358-414 5-63 (273)
269 4ady_A RPN2, 26S proteasome re 65.8 1.6E+02 0.0055 32.3 26.4 152 256-409 495-656 (963)
270 3mv2_A Coatomer subunit alpha; 64.2 94 0.0032 29.0 12.4 56 377-446 200-257 (325)
271 3lpz_A GET4 (YOR164C homolog); 63.6 1E+02 0.0034 29.1 20.2 75 167-243 135-214 (336)
272 4ady_A RPN2, 26S proteasome re 62.0 1.9E+02 0.0064 31.7 18.2 50 228-278 536-587 (963)
273 4b4t_R RPN7, 26S proteasome re 61.6 57 0.0019 32.2 11.3 94 350-443 131-235 (429)
274 1wdy_A 2-5A-dependent ribonucl 61.2 28 0.00097 31.4 8.6 23 143-165 7-30 (285)
275 3esl_A Checkpoint serine/threo 56.4 98 0.0033 26.7 13.9 105 367-497 61-171 (202)
276 2zu6_B Programmed cell death p 55.4 72 0.0025 29.7 10.0 65 192-257 177-243 (307)
277 1wdy_A 2-5A-dependent ribonucl 55.3 27 0.00094 31.5 7.4 57 10-69 7-63 (285)
278 2r9g_A AAA ATPase, central reg 55.0 1E+02 0.0035 26.5 9.8 57 192-249 25-86 (204)
279 3ltm_A Alpha-REP4; protein eng 53.4 1.1E+02 0.0036 26.2 19.3 186 56-296 16-202 (211)
280 2d2s_A Exocyst complex compone 53.3 1.2E+02 0.0041 26.9 10.7 136 8-164 21-161 (235)
281 4a1g_A Mitotic checkpoint seri 52.6 95 0.0032 25.4 9.3 80 367-449 52-134 (152)
282 4b4t_R RPN7, 26S proteasome re 51.9 82 0.0028 31.0 10.5 56 253-308 133-194 (429)
283 3ltj_A Alpharep-4; protein eng 50.6 1.1E+02 0.0039 25.7 20.0 25 64-88 19-43 (201)
284 2wpv_A GET4, UPF0363 protein Y 49.3 1.7E+02 0.0057 27.3 20.3 165 253-444 35-216 (312)
285 2wvi_A Mitotic checkpoint seri 47.3 1.2E+02 0.0042 25.1 9.4 77 367-449 47-129 (164)
286 2pk8_A Uncharacterized protein 44.3 14 0.00047 27.0 2.4 30 472-501 12-41 (103)
287 4gq2_M Nucleoporin NUP120; bet 43.3 1.7E+02 0.0058 32.3 12.3 91 320-416 816-932 (950)
288 3esl_A Checkpoint serine/threo 42.7 1.2E+02 0.0039 26.2 8.4 47 21-69 95-142 (202)
289 4a1g_A Mitotic checkpoint seri 41.6 1.4E+02 0.0047 24.5 8.3 76 213-291 65-141 (152)
290 2l0z_A Glycoprotein G2; zinc-b 41.5 8.8 0.0003 23.0 0.9 10 579-588 20-29 (42)
291 4b4t_S RPN3, 26S proteasome re 41.0 1.8E+02 0.0061 29.4 10.7 61 42-102 231-299 (523)
292 1oyz_A Hypothetical protein YI 40.2 2E+02 0.007 25.7 21.5 48 40-87 35-82 (280)
293 3bge_A Predicted ATPase; struc 39.5 1.7E+02 0.0057 25.1 8.7 39 192-230 18-56 (201)
294 1k1a_A B-cell lymphoma 3-encod 38.9 1.9E+02 0.0064 24.9 10.3 152 11-165 12-175 (241)
295 2k0q_A Putative uncharacterize 37.8 10 0.00036 25.9 0.9 22 565-586 8-29 (74)
296 3kea_A K1L; tropism, ANK repea 36.4 81 0.0028 28.7 7.3 116 326-451 104-223 (285)
297 1n11_A Ankyrin; clathrin, BAND 35.6 2.6E+02 0.009 27.0 11.5 171 258-439 150-331 (437)
298 4gq2_M Nucleoporin NUP120; bet 35.5 2E+02 0.0069 31.7 11.3 126 257-396 816-950 (950)
299 1ug3_A EIF4GI, eukaryotic prot 35.0 1.4E+02 0.0046 28.3 8.7 22 78-99 16-37 (339)
300 3ctd_A Putative ATPase, AAA fa 34.2 2.3E+02 0.0079 24.5 10.1 69 170-248 34-107 (213)
301 1n11_A Ankyrin; clathrin, BAND 32.0 2.3E+02 0.008 27.4 10.4 20 49-68 18-37 (437)
302 2ijq_A Hypothetical protein; s 30.6 1.5E+02 0.0051 24.5 6.9 56 188-244 40-103 (161)
303 3ygs_P Procaspase 9; apoptosis 30.5 61 0.0021 24.1 4.3 39 56-94 51-89 (97)
304 3eiq_C Programmed cell death p 29.9 3.7E+02 0.013 25.6 17.3 82 171-266 220-303 (358)
305 2d2s_A Exocyst complex compone 29.2 1.1E+02 0.0036 27.3 6.4 84 289-376 25-117 (235)
306 3hra_A Ankyrin repeat family p 28.6 1.2E+02 0.0041 25.3 6.7 181 80-275 9-199 (201)
307 2ion_A PDCD4, programmed cell 28.0 2.4E+02 0.0083 22.9 8.8 63 141-216 12-80 (152)
308 3txn_A 26S proteasome regulato 27.1 4.3E+02 0.015 25.5 25.5 279 140-447 21-345 (394)
309 3eu9_A Huntingtin-interacting 26.9 1.2E+02 0.004 26.2 6.4 57 389-446 181-237 (240)
310 4g8k_A 2-5A-dependent ribonucl 26.3 3.1E+02 0.011 25.2 9.7 11 151-161 250-260 (337)
311 3mkr_B Coatomer subunit alpha; 26.1 1.9E+02 0.0063 27.0 7.5 56 377-446 191-248 (320)
312 1wgl_A TOLL-interacting protei 26.1 74 0.0025 21.1 3.5 46 404-450 12-57 (59)
313 2nsz_A Programmed cell death p 26.0 1.9E+02 0.0064 22.7 6.7 64 192-256 18-83 (129)
314 2nsz_A Programmed cell death p 25.2 2.5E+02 0.0085 22.0 10.2 63 141-216 10-78 (129)
315 4aez_C MAD3, mitotic spindle c 25.0 2.7E+02 0.0093 24.4 7.9 50 399-448 131-182 (223)
316 3qil_A Clathrin heavy chain 1; 23.5 50 0.0017 25.7 2.6 55 181-238 32-86 (125)
317 2b7e_A PRE-mRNA processing pro 23.3 85 0.0029 20.9 3.3 29 89-117 2-31 (59)
318 2hgo_A CASSIICOLIN; toxin, dis 22.9 17 0.00056 18.8 -0.1 13 577-589 8-22 (27)
319 2ion_A PDCD4, programmed cell 22.6 2.2E+02 0.0077 23.1 6.7 64 192-256 20-85 (152)
320 3ygs_P Procaspase 9; apoptosis 22.3 1.2E+02 0.004 22.5 4.5 37 265-301 51-87 (97)
321 3qye_A TBC1 domain family memb 22.2 4.7E+02 0.016 24.2 10.9 44 203-246 210-253 (331)
322 2lo3_A SAGA-associated factor 22.0 24 0.00081 21.4 0.4 13 544-556 15-27 (44)
323 3twe_A Alpha4H; unknown functi 21.8 94 0.0032 16.0 2.7 18 474-491 2-19 (27)
324 3bqo_A Telomeric repeat-bindin 21.6 3.8E+02 0.013 22.9 8.1 51 366-416 94-151 (211)
325 2yru_A Steroid receptor RNA ac 21.1 1.2E+02 0.0042 23.5 4.5 43 203-245 48-90 (118)
326 3ljn_A Hypothetical protein; a 21.0 4.9E+02 0.017 24.1 10.1 79 151-247 31-112 (364)
327 1k1a_A B-cell lymphoma 3-encod 20.7 2.5E+02 0.0087 24.0 7.5 21 227-247 17-37 (241)
328 3b7b_A Euchromatic histone-lys 20.7 1.7E+02 0.0059 25.2 6.3 85 357-444 148-235 (237)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-38 Score=336.80 Aligned_cols=422 Identities=12% Similarity=-0.015 Sum_probs=320.9
Q ss_pred CChhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC-CC----------
Q 043490 3 HSTQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMP-KR---------- 71 (589)
Q Consensus 3 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~---------- 71 (589)
|+..++..++.+|.+.|++++|..+|+.+... + +++.+++.++.+|.++|++++|+++|+++. ..
T Consensus 115 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 190 (597)
T 2xpi_A 115 GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-N---RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-G---TCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------
T ss_pred CCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-c---cchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc
Confidence 33444444444444444444444444443221 2 445555555555555555555555555322 11
Q ss_pred --------CcchHHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhc----hhhHHHH----HHHHHHhcCC
Q 043490 72 --------NVVSWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCD----YLHGKLV----HALALKFSLD 135 (589)
Q Consensus 72 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~----~~~~~~~----~~~~~~~g~~ 135 (589)
+..+|+.++.+|.+.|++++|+++|++|.+. .|+..+....+..+. ....... +..+...+..
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV-DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 2445555555555555555555555555443 233222222222221 0000000 1112222233
Q ss_pred CchhHHHHHHHHHhc-CCHHHHHHHHhhCCC--CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 043490 136 AHVYVANALINMYSK-SCADEAWKVFENMEF--RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGM 212 (589)
Q Consensus 136 ~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~ 212 (589)
....+++.++.+|.+ |++++|.++|+++.+ ++..+|+.++.+| .+.|++++|+++|+++.+.+
T Consensus 270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~g~~~~A~~~~~~~~~~~- 335 (597)
T 2xpi_A 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL-------------FVRSRFIDVLAITTKILEID- 335 (597)
T ss_dssp HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH-------------HHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH-------------HHhcCHHHHHHHHHHHHHcC-
Confidence 334456666888999 999999999999987 7999999999999 99999999999999999865
Q ss_pred CCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHH
Q 043490 213 APDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSIL 289 (589)
Q Consensus 213 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 289 (589)
+.+..++..++.++.+.|+.++|.++++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++
T Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 414 (597)
T 2xpi_A 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFA 414 (597)
T ss_dssp TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3477889999999999999999999999999765 7789999999999999999999999999886 45688999999
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHH
Q 043490 290 KAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRIL 367 (589)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 367 (589)
.+|.+.|++++|+++|+++ ...| +..++..++.+|.+.|++++|.++|+.+.+.. +.+..+|+.++..|.+.|+++
T Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 492 (597)
T 2xpi_A 415 HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQ 492 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999 5445 77899999999999999999999999997642 336788999999999999999
Q ss_pred HHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHH
Q 043490 368 EAEKLIREM-------PMEPD--SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLI 438 (589)
Q Consensus 368 ~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 438 (589)
+|.++|+++ +..|+ ..+|..++.+|.+.|++++|...++++.+.+|+++.+|..++.+|.+.|++++|.+.
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITH 572 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999988 45787 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC
Q 043490 439 RKEMKGSR 446 (589)
Q Consensus 439 ~~~m~~~~ 446 (589)
++++.+..
T Consensus 573 ~~~~l~~~ 580 (597)
T 2xpi_A 573 LHESLAIS 580 (597)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 99998743
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-34 Score=307.67 Aligned_cols=420 Identities=10% Similarity=0.035 Sum_probs=350.7
Q ss_pred CChhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC--CCCcchHHHHH
Q 043490 3 HSTQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMP--KRNVVSWTALI 80 (589)
Q Consensus 3 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li 80 (589)
|++..|+.++..+.+.|++++|..+|+.+.+. . |+..++..++..|.+.|++++|..+|+++. .++..+|+.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI-T---GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-H---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh-C---CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHH
Confidence 56788999999999999999999999999865 3 577889999999999999999999999994 57999999999
Q ss_pred HHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHH
Q 043490 81 SGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKV 159 (589)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~l 159 (589)
.+|.+.|++++|+++|+++. |+... ..++. .......|.+.+..+++.++.+|.+ |++++|.++
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~----~~~~~----~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 222 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETN----PFRKD----EKNAN-------KLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKEC 222 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSC----TTC---------------------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHhccC----Ccccc----ccccc-------cccccccccchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999998532 22100 00000 0001123456678999999999999 999999999
Q ss_pred HhhCCC--C-ChhHHHHHHHHHHcCCcHHHH-------------------------HHHHHHcCCHHHHHHHHHHHHHcC
Q 043490 160 FENMEF--R-NVISWNSMIAAFRACKLEAQA-------------------------IELFAKMKNEEEALFLFRQLQREG 211 (589)
Q Consensus 160 f~~m~~--~-~~~~~~~li~~~~~~g~~~~a-------------------------~~~~~~~g~~~~A~~~~~~m~~~g 211 (589)
|++|.+ | +...|..+...+...+..+.+ ...|.+.|++++|.++|+++.+.
T Consensus 223 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~- 301 (597)
T 2xpi_A 223 YKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL- 301 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-
T ss_pred HHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-
Confidence 999874 3 344555555444322222211 11235678999999999998765
Q ss_pred CCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHH
Q 043490 212 MAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSI 288 (589)
Q Consensus 212 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 288 (589)
+++..++..++.++.+.|++++|.++++.+.+.+ +.+..+++.++.+|.+.|++++|..+|+++. ..+..+|+.+
T Consensus 302 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 379 (597)
T 2xpi_A 302 -EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAV 379 (597)
T ss_dssp -GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 5899999999999999999999999999999887 5688899999999999999999999999886 4578899999
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCH
Q 043490 289 LKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRI 366 (589)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 366 (589)
+..|.+.|++++|.++|+++ ...| +..+|..++.++.+.|++++|.++|+.+.+. .+.+..+|..++.+|.+.|++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCH
Confidence 99999999999999999999 6666 4679999999999999999999999999753 244788999999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc------CCCC-hhHHHHHHHHhhhcCChHHHHH
Q 043490 367 LEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQL------EPGD-SLGFVQMSNIYCLSGSFNKARL 437 (589)
Q Consensus 367 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~p~~-~~~~~~l~~~~~~~g~~~~a~~ 437 (589)
++|.++|+++ ...| +..+|+.++..|.+.|++++|.+.++++.+. +|++ ..+|..++.+|.+.|++++|.+
T Consensus 458 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 458 LLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999998 3333 6899999999999999999999999999887 5543 6789999999999999999999
Q ss_pred HHHHHhcCC
Q 043490 438 IRKEMKGSR 446 (589)
Q Consensus 438 ~~~~m~~~~ 446 (589)
+++++.+.+
T Consensus 538 ~~~~~~~~~ 546 (597)
T 2xpi_A 538 ALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 999998765
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=3.7e-26 Score=232.00 Aligned_cols=370 Identities=14% Similarity=0.092 Sum_probs=319.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCC
Q 043490 11 LFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK---RNVVSWTALISGYAQHG 87 (589)
Q Consensus 11 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g 87 (589)
+...+.+.|++++|.+.+..+.+..| .+...+..+...+...|++++|...++...+ .+..+|+.+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP---DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 34567789999999999999988766 7788888899999999999999999987653 46778999999999999
Q ss_pred ChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCC-
Q 043490 88 NAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFENMEF- 165 (589)
Q Consensus 88 ~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~- 165 (589)
++++|+..|+++.+. .+.+...+..+...|.+ |++++|.+.|+++.+
T Consensus 82 ~~~~A~~~~~~al~~-------------------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (388)
T 1w3b_A 82 QLQEAIEHYRHALRL-------------------------------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY 130 (388)
T ss_dssp CHHHHHHHHHHHHHH-------------------------------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc-------------------------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999998764 12334568888899999 999999999998763
Q ss_pred -CC-hhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Q 043490 166 -RN-VISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIA 243 (589)
Q Consensus 166 -~~-~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 243 (589)
|+ ...+..+...+ ...|++++|.+.|+++.... +.+..+|..+...+...|+++.|...++.++
T Consensus 131 ~p~~~~~~~~l~~~~-------------~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 196 (388)
T 1w3b_A 131 NPDLYCVRSDLGNLL-------------KALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196 (388)
T ss_dssp CTTCTHHHHHHHHHH-------------HTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH-------------HHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44 45677777777 88899999999999998753 3357889999999999999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHH
Q 043490 244 KYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPD-SATFV 318 (589)
Q Consensus 244 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~ 318 (589)
+.. +.+...+..+...+...|++++|...|++.. ..+..+|..+...|...|++++|++.|+++ ...|+ ..++.
T Consensus 197 ~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 275 (388)
T 1w3b_A 197 TLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC 275 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 886 6678889999999999999999999999775 346789999999999999999999999999 66664 66899
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC
Q 043490 319 SLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHG 396 (589)
Q Consensus 319 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g 396 (589)
.+..++.+.|++++|.+.|+.+.+.. +.+..++..+...|.+.|++++|.+.++++ ...|+ ..+|..+...+.+.|
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 353 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 99999999999999999999987642 446778999999999999999999999988 55565 889999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCC
Q 043490 397 ETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGS 431 (589)
Q Consensus 397 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 431 (589)
++++|...++++.+..|.++.+|..+..+|.+.|+
T Consensus 354 ~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 354 KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999988877664
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=4.7e-28 Score=251.27 Aligned_cols=195 Identities=11% Similarity=0.122 Sum_probs=172.7
Q ss_pred HHHHHHhhCCCC-----ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCc
Q 043490 155 EAWKVFENMEFR-----NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGL 229 (589)
Q Consensus 155 ~A~~lf~~m~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 229 (589)
.+..+++.+.++ ....++.+|.+| ++.|+.++|+++|++|.+.|++||..||+++|.+|++.
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c-------------~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~ 74 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMC-------------SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLA 74 (501)
T ss_dssp ----------------CHHHHHHHHHHHT-------------TTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHH-------------HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhC
Confidence 344555555432 234688899999 99999999999999999999999999999999999865
Q ss_pred C---------cHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcC
Q 043490 230 V---------TERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT----YHDLVSWNSILKAYALHG 296 (589)
Q Consensus 230 ~---------~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g 296 (589)
+ +++.|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+||++|.+|++.|
T Consensus 75 ~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g 154 (501)
T 4g26_A 75 EAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG 154 (501)
T ss_dssp CCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC
Confidence 4 478999999999999999999999999999999999999999999997 689999999999999999
Q ss_pred CHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhc
Q 043490 297 QAKEALQLFSNM---NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRV 363 (589)
Q Consensus 297 ~~~~A~~~~~~m---~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 363 (589)
+.++|.++|++| |+.||..||++||.+|++.|++++|.+++++|.+ .+..|+..||+.++..|...
T Consensus 155 ~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 155 DADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 999999999999 9999999999999999999999999999999955 59999999999999998764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2.7e-27 Score=245.55 Aligned_cols=196 Identities=13% Similarity=0.146 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC---------HH
Q 043490 199 EALFLFRQLQREGMAPDW-CTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGS---------IS 268 (589)
Q Consensus 199 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~---------~~ 268 (589)
.+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|++||..+||+||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 445666777777766554 46889999999999999999999999999999999999999999998765 78
Q ss_pred HHHHHHhhcC----CCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043490 269 LSKQVFDKMT----YHDLVSWNSILKAYALHGQAKEALQLFSNM---NVQPDSATFVSLLSACSHAGLVQEGNKVFHSML 341 (589)
Q Consensus 269 ~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 341 (589)
.|.++|++|. .||..+||+||.+|++.|++++|.++|++| |+.||..||+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8999999997 689999999999999999999999999999 999999999999999999999999999999996
Q ss_pred HhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHc
Q 043490 342 ENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM---PMEPDSVIWSVLLGSCRKH 395 (589)
Q Consensus 342 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~ 395 (589)
+ .|+.||..+|++||++|++.|++++|.++|++| +..|+..||+.++..|...
T Consensus 168 ~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 E-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp H-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred h-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 5 499999999999999999999999999999999 8899999999999988764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.1e-24 Score=221.09 Aligned_cols=348 Identities=16% Similarity=0.108 Sum_probs=302.7
Q ss_pred HHHHHHhcCChHHHHHHHhcCC--CC-CcchHHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHH
Q 043490 48 LINMYAKFGYLDDARHLFDEMP--KR-NVVSWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKL 124 (589)
Q Consensus 48 li~~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~ 124 (589)
+...+.+.|++++|.+.++++. .| +...+..+...+.+.|++++|...++...+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~---------------------- 62 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ---------------------- 62 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------------
Confidence 4556778999999999998765 34 4556777778889999999999998877653
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCC--CC-ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHH
Q 043490 125 VHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFENME--FR-NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEA 200 (589)
Q Consensus 125 ~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A 200 (589)
.+.+...+..+...|.+ |++++|...|+++. .| +..+|..+...+ .+.|++++|
T Consensus 63 ---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-------------~~~g~~~~A 120 (388)
T 1w3b_A 63 ---------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL-------------VAAGDMEGA 120 (388)
T ss_dssp ---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------------HHHSCSSHH
T ss_pred ---------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHH-------------HHcCCHHHH
Confidence 24567788999999999 99999999999875 34 456799999999 999999999
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC-
Q 043490 201 LFLFRQLQREGMAPD-WCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT- 278 (589)
Q Consensus 201 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~- 278 (589)
++.|+++.+.. |+ ...+..+...+...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|...|+++.
T Consensus 121 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 121 VQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp HHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999998753 44 4566777888899999999999999999875 6678899999999999999999999999987
Q ss_pred --CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchH
Q 043490 279 --YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHY 353 (589)
Q Consensus 279 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~ 353 (589)
..+...|..+...+...|++++|+..|++. ...|+ ..++..+..++...|++++|.+.|+.+.+. .| +...|
T Consensus 198 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~ 274 (388)
T 1w3b_A 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAY 274 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHH
Confidence 345678999999999999999999999999 77775 678899999999999999999999998753 34 46689
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCC
Q 043490 354 ACMVDLLGRVGRILEAEKLIREM-PME-PDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGS 431 (589)
Q Consensus 354 ~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 431 (589)
..+...|.+.|++++|.+.|+++ ... ++..+|..+...+...|++++|...++++.+..|++..++..++.+|.+.|+
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 354 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 99999999999999999999998 333 4689999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcC
Q 043490 432 FNKARLIRKEMKGS 445 (589)
Q Consensus 432 ~~~a~~~~~~m~~~ 445 (589)
+++|...++++.+.
T Consensus 355 ~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 355 LQEALMHYKEAIRI 368 (388)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999864
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.4e-22 Score=209.63 Aligned_cols=344 Identities=12% Similarity=0.060 Sum_probs=238.0
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 043490 24 AMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK---RNVVSWTALISGYAQHGNAEECFRLFCSLL 100 (589)
Q Consensus 24 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 100 (589)
+...+..+....| .+...+..+...|.+.|++++|+.+|+++.+ .+..+|..+...|.+.|++++|+..|+++.
T Consensus 11 ~~~~~~~~~~~~p---~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 11 VDLGTENLYFQSM---ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp ------------C---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444334 5667777777777777777777777776542 356677777777777777777777777766
Q ss_pred hccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCC--C-Ch---hHHHH
Q 043490 101 QYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFENMEF--R-NV---ISWNS 173 (589)
Q Consensus 101 ~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~--~-~~---~~~~~ 173 (589)
+. -+.+..++..+..+|.+ |++++|...|+++.+ | +. ..|..
T Consensus 88 ~~-------------------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 136 (450)
T 2y4t_A 88 QL-------------------------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136 (450)
T ss_dssp HH-------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred hc-------------------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 53 12234455556666666 666666666666543 2 22 44444
Q ss_pred HHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHH
Q 043490 174 MIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVI 253 (589)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 253 (589)
++..+...+ +..+...+...|+++.|...+..+.+.. +.+..+
T Consensus 137 l~~~~~~~~------------------------------------~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 137 LIKSDEMQR------------------------------------LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHHHHH------------------------------------HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHH------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 444431111 1111223445566666666666666554 556677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH-HHHH--------
Q 043490 254 ANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDSAT-FVSL-------- 320 (589)
Q Consensus 254 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t-~~~l-------- 320 (589)
+..++.+|.+.|++++|...|+++. ..+..+|..+...|...|++++|+..|+++ ...|+... +..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 7778888888888888888887765 356778888888888888888888888888 66665443 3333
Q ss_pred ----HHHHhccCcHHHHHHHHHHhHHhcCCccC-----cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 043490 321 ----LSACSHAGLVQEGNKVFHSMLENHGVVPQ-----LDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLL 389 (589)
Q Consensus 321 ----l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 389 (589)
..++.+.|++++|.+.|+.+.+. .|+ ..+|..+..++.+.|++++|++.++++ ...| +..+|..+.
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 77888999999999999998764 454 347889999999999999999999987 4455 589999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHH------------HHhhhcC-----ChHHHHHHHHH
Q 043490 390 GSCRKHGETRLAELAATKLKQLEPGDSLGFVQMS------------NIYCLSG-----SFNKARLIRKE 441 (589)
Q Consensus 390 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 441 (589)
.+|...|++++|...++++.+++|.++.++..+. +.|...| +.+++.+.+++
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999888 4466666 55666777765
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.3e-22 Score=208.33 Aligned_cols=421 Identities=9% Similarity=-0.079 Sum_probs=314.2
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-CcchHHHHHH
Q 043490 5 TQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--R-NVVSWTALIS 81 (589)
Q Consensus 5 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~ 81 (589)
...+......+.+.|++++|...|+.+++. . |++.++..+...|.+.|++++|...|+++.+ | +..+|..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL-K---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc-C---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 456777888899999999999999999987 2 6889999999999999999999999998753 4 5678999999
Q ss_pred HHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhc----hhhHHHHHHHHHHhcCCCchhHHHH---HHHHHhc-CCH
Q 043490 82 GYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCD----YLHGKLVHALALKFSLDAHVYVANA---LINMYSK-SCA 153 (589)
Q Consensus 82 ~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~----~~~~~~~~~~~~~~g~~~~~~~~~~---li~~y~~-g~~ 153 (589)
+|.+.|++++|+..|+++.....++.......+..+. ........+.+...+..|+....+. ....... ...
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999998773334444433333322 1111111100000000011000000 0001111 112
Q ss_pred HHHHHHHhhCC---------CC-ChhHHHHHHHHHHcCCcHHHHHHHHH---HcCCHHHHHHHHHHHHH-----cCC---
Q 043490 154 DEAWKVFENME---------FR-NVISWNSMIAAFRACKLEAQAIELFA---KMKNEEEALFLFRQLQR-----EGM--- 212 (589)
Q Consensus 154 ~~A~~lf~~m~---------~~-~~~~~~~li~~~~~~g~~~~a~~~~~---~~g~~~~A~~~~~~m~~-----~g~--- 212 (589)
..+...+.... .| +...|......+ . +.|++++|+..|+++.. ...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 228 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSN-------------LYKRSPESYDKADESFTKAARLFEEQLDKNNE 228 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHH-------------HSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHH-------------HHhhhhccHHHHHHHHHHHHHHhhhhhccCcc
Confidence 22222222221 12 133343333333 3 37888888888888877 311
Q ss_pred -----CCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhH
Q 043490 213 -----APDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVS 284 (589)
Q Consensus 213 -----~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~ 284 (589)
+.+..++..+...+...|+++.|...+..+.+..-. ..++..+...|...|++++|...|+++. ..+...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 306 (514)
T 2gw1_A 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV 306 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHH
T ss_pred ccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHH
Confidence 223467778888899999999999999999988633 8889999999999999999999999876 346778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhh
Q 043490 285 WNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGR 362 (589)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 362 (589)
|..+...|...|++++|+..|++. ...| +..++..+...+...|++++|.+.++.+.+.. +.+...+..+...|.+
T Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 307 YYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHH
Confidence 999999999999999999999999 5555 46788889999999999999999999987642 2356788999999999
Q ss_pred cCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCC
Q 043490 363 VGRILEAEKLIREM----PMEPD----SVIWSVLLGSCRK---HGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGS 431 (589)
Q Consensus 363 ~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 431 (589)
.|++++|...++++ +-.|+ ...|..+...+.. .|++++|...++++.+..|.++.++..++.+|.+.|+
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence 99999999999987 22233 4589999999999 9999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCC
Q 043490 432 FNKARLIRKEMKGSR 446 (589)
Q Consensus 432 ~~~a~~~~~~m~~~~ 446 (589)
+++|...+++..+.+
T Consensus 465 ~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 465 IDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987644
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=4.7e-21 Score=198.22 Aligned_cols=370 Identities=11% Similarity=0.022 Sum_probs=222.9
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHH
Q 043490 4 STQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK---RNVVSWTALI 80 (589)
Q Consensus 4 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li 80 (589)
++.++..+...+.+.|++++|..+|+.+++..| .+..++..+...|...|++++|...|+++.+ .+..+|..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP---DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 456788899999999999999999999998766 7899999999999999999999999998763 3577899999
Q ss_pred HHHHhCCChhHHHHHHHHHHhccCCCce----eHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHH
Q 043490 81 SGYAQHGNAEECFRLFCSLLQYFFPNEF----SLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADE 155 (589)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~m~~~~~p~~~----t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~ 155 (589)
..|.+.|++++|+..|+++.+. .|+.. .+..+.... ....+..+...|.+ |++++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~~-------------------~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS-NPSENEEKEAQSQLIKSD-------------------EMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCChhhHHHHHHHHHHH-------------------HHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999875 23221 111111100 00011122333555 66666
Q ss_pred HHHHHhhCCC---CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcH
Q 043490 156 AWKVFENMEF---RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTE 232 (589)
Q Consensus 156 A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 232 (589)
|...|+++.+ .+...|..+...| .+.|++++|++.|+++.+.. +.+..++..+...+...|++
T Consensus 162 A~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 162 AIAFLDKILEVCVWDAELRELRAECF-------------IKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH-------------HHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHH-------------HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 6666655431 2445555555555 55666666666666555432 23445555555555555555
Q ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 043490 233 RHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQ 311 (589)
Q Consensus 233 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 311 (589)
+.|...++.+.+.. +.+...+..+... + ....+..+...+...|++++|++.|+++ ...
T Consensus 228 ~~A~~~~~~~~~~~-p~~~~~~~~~~~~----~---------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~ 287 (450)
T 2y4t_A 228 ELSLSEVRECLKLD-QDHKRCFAHYKQV----K---------------KLNKLIESAEELIRDGRYTDATSKYESVMKTE 287 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHH----H---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-CChHHHHHHHHHH----H---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55555555555442 2222222222000 0 0001112255666666666666666666 444
Q ss_pred CC-----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HH
Q 043490 312 PD-----SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SV 383 (589)
Q Consensus 312 p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~ 383 (589)
|+ ...+..+..++.+.|++++|.+.++.+.+. .| +...|..+..+|...|++++|.+.++++ ...|+ ..
T Consensus 288 p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 364 (450)
T 2y4t_A 288 PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ 364 (450)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH
T ss_pred CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHH
Confidence 44 234555666666666666666666666543 23 4456666666666667777777666666 44554 44
Q ss_pred HHHHHHHH------------HHHcC-----CHHHHHHHHHH-HhhcCCCCh----------hHHHHHHHHhhhcCChH
Q 043490 384 IWSVLLGS------------CRKHG-----ETRLAELAATK-LKQLEPGDS----------LGFVQMSNIYCLSGSFN 433 (589)
Q Consensus 384 ~~~~ll~~------------~~~~g-----~~~~a~~~~~~-~~~~~p~~~----------~~~~~l~~~~~~~g~~~ 433 (589)
.+..+..+ |...| +.+++.+.+++ ..+..|++. ..+..+..+|...|+.+
T Consensus 365 ~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~ 442 (450)
T 2y4t_A 365 IREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442 (450)
T ss_dssp HHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGG
T ss_pred HHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHH
Confidence 44444422 22223 55677777776 566666431 13445555555555543
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=5.9e-21 Score=202.22 Aligned_cols=427 Identities=10% Similarity=-0.028 Sum_probs=319.2
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHH
Q 043490 5 TQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK---RNVVSWTALIS 81 (589)
Q Consensus 5 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~ 81 (589)
...|..+...+.+.|++++|...|+.+++..| .++.++..+...|.+.|++++|.+.|+++.+ .+..+|..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP---NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC---CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 35677888899999999999999999999877 8899999999999999999999999998753 36778999999
Q ss_pred HHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhc--CCCchhHHHHHHHHHhc-CCHHHHHH
Q 043490 82 GYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFS--LDAHVYVANALINMYSK-SCADEAWK 158 (589)
Q Consensus 82 ~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g--~~~~~~~~~~li~~y~~-g~~~~A~~ 158 (589)
.|.+.|++++|+..|+.+.....+........+.......+...+..++... ..+........+..|.. .+.+.+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 9999999999999997443222222222222222222344444444443221 01111112233444555 77777777
Q ss_pred HHhhCCCCChh---HHHHHHHHHHcC-CcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHH
Q 043490 159 VFENMEFRNVI---SWNSMIAAFRAC-KLEAQAIELFAKMKNEEEALFLFRQLQREGMAPD--------WCTFSIVLKAC 226 (589)
Q Consensus 159 lf~~m~~~~~~---~~~~li~~~~~~-g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~a~ 226 (589)
.+......+.. .+..+...+... +++. ...|++++|+.+|+++.+.. |+ ..++..+...+
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYL------VANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHH------HHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhH------HHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHH
Confidence 77766654433 333333333111 1111 23467899999999998753 43 23466666778
Q ss_pred hCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHH
Q 043490 227 AGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQ 303 (589)
Q Consensus 227 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 303 (589)
...|+++.|...+..+.+.. |+..++..+...|...|++++|...|+++. ..+..+|..+...|...|++++|++
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 88999999999999999875 558889999999999999999999999876 4567899999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC----C
Q 043490 304 LFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM----P 377 (589)
Q Consensus 304 ~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~ 377 (589)
.|++. ...|+ ..++..+...+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|+++ +
T Consensus 332 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 99999 55564 5688889999999999999999999987652 335668899999999999999999999987 1
Q ss_pred CC----CCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 378 ME----PDSVIWSVLLGSCRKH----------GETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 378 ~~----p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
.. .....+..+...+... |++++|...++++.+..|.+..++..++.+|.+.|++++|.+.+++..
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 11 1233455556777777 999999999999999999999999999999999999999999999987
Q ss_pred cCC
Q 043490 444 GSR 446 (589)
Q Consensus 444 ~~~ 446 (589)
+..
T Consensus 490 ~~~ 492 (537)
T 3fp2_A 490 ILA 492 (537)
T ss_dssp HHC
T ss_pred HhC
Confidence 654
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.8e-20 Score=197.22 Aligned_cols=402 Identities=11% Similarity=0.011 Sum_probs=296.3
Q ss_pred CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHH
Q 043490 2 LHSTQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK---RNVVSWTA 78 (589)
Q Consensus 2 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~ 78 (589)
.|++.+|..+..++...|++++|.+.++.+++..| .+..++..+..+|.+.|++++|...|+++.. ++......
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 112 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP---DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEP 112 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHH
Confidence 37889999999999999999999999999998877 7889999999999999999999999998753 34445555
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhc-cCCCceeHHHHHHHhc----hhhHHHHHHHHHHhcC---------CCchhHHHHH
Q 043490 79 LISGYAQHGNAEECFRLFCSLLQY-FFPNEFSLASVLISCD----YLHGKLVHALALKFSL---------DAHVYVANAL 144 (589)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~~l~a~~----~~~~~~~~~~~~~~g~---------~~~~~~~~~l 144 (589)
++..+.+......+.+.+..+... ..|+...+..-..... ......+......... +.+...+..+
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (514)
T 2gw1_A 113 MLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMN 192 (514)
T ss_dssp HHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHH
Confidence 555554433333333333222211 1111111111000000 0000111111111111 1112222222
Q ss_pred HH-HH--hc-CCHHHHHHHHhhCCC----------------C-ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHH
Q 043490 145 IN-MY--SK-SCADEAWKVFENMEF----------------R-NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFL 203 (589)
Q Consensus 145 i~-~y--~~-g~~~~A~~lf~~m~~----------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~ 203 (589)
.. .+ .+ |++++|...|+++.+ | +..+|..+...+ ...|++++|+..
T Consensus 193 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~A~~~ 259 (514)
T 2gw1_A 193 GLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK-------------FLKNDPLGAHED 259 (514)
T ss_dssp HHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH-------------HHSSCHHHHHHH
T ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH-------------HHCCCHHHHHHH
Confidence 22 22 25 999999999987644 1 345677777788 899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CC
Q 043490 204 FRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YH 280 (589)
Q Consensus 204 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~ 280 (589)
|+++.... |+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. ..
T Consensus 260 ~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 336 (514)
T 2gw1_A 260 IKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336 (514)
T ss_dssp HHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS
T ss_pred HHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh
Confidence 99998865 448888899999999999999999999998875 5678889999999999999999999999875 44
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccC----cchHH
Q 043490 281 DLVSWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQ----LDHYA 354 (589)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 354 (589)
+..+|..+...|...|++++|+..|+++ ...| +..++..+...+...|++++|.+.++.+.+...-.++ ...+.
T Consensus 337 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 416 (514)
T 2gw1_A 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416 (514)
T ss_dssp CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 6789999999999999999999999999 5555 4678888999999999999999999988754322222 33889
Q ss_pred HHHHHHhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 043490 355 CMVDLLGR---VGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQM 422 (589)
Q Consensus 355 ~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 422 (589)
.+...|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...++++.++.|.++..+..+
T Consensus 417 ~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 417 GKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999999 99999999999988 3345 488899999999999999999999999999999887766655
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=4.5e-19 Score=187.66 Aligned_cols=394 Identities=12% Similarity=0.047 Sum_probs=293.5
Q ss_pred CChhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHH
Q 043490 3 HSTQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALISG 82 (589)
Q Consensus 3 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~ 82 (589)
.++.+|..+...+.+.|++++|.+.++.+++..| .+..++..+...|...|++++|...|+.+. .+....+..+..
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~ 132 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP---DHSKALLRRASANESLGNFTDAMFDLSVLS-LNGDFDGASIEP 132 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHC------------C
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHH
Confidence 4677889999999999999999999999998877 788999999999999999999999997443 233333444556
Q ss_pred HHhCCChhHHHHHHHHHHhc-------cCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCch---hHHHHHHHHHhc--
Q 043490 83 YAQHGNAEECFRLFCSLLQY-------FFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHV---YVANALINMYSK-- 150 (589)
Q Consensus 83 ~~~~g~~~~A~~~~~~m~~~-------~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~---~~~~~li~~y~~-- 150 (589)
+...+...+|+..++.+... ..|+...+...+......... .. .......+. .....+...+..
T Consensus 133 ~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~l~~~~~~~~ 208 (537)
T 3fp2_A 133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV---SS-VNTSSNYDTAYALLSDALQRLYSATD 208 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH---HT-SCCCCSSCSSHHHHHHHHHHHHTCSH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH---HH-HhhccccccHHHHHHHHHHHHHHhhh
Confidence 66677778999999998653 234433333333222111100 00 011111121 144444444443
Q ss_pred -------CCHHHHHHHHhhCCC--C-ChhH-------HHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 043490 151 -------SCADEAWKVFENMEF--R-NVIS-------WNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMA 213 (589)
Q Consensus 151 -------g~~~~A~~lf~~m~~--~-~~~~-------~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~ 213 (589)
|++++|..+|+++.+ | +... |..+...+ ...|++++|+..|++.... .
T Consensus 209 ~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~-------------~~~~~~~~A~~~~~~~~~~--~ 273 (537)
T 3fp2_A 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFH-------------FLKNNLLDAQVLLQESINL--H 273 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH-------------HHTTCHHHHHHHHHHHHHH--C
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHH-------------HhcccHHHHHHHHHHHHhc--C
Confidence 378899999988764 3 3333 44444444 8899999999999999885 4
Q ss_pred CCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHH
Q 043490 214 PDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILK 290 (589)
Q Consensus 214 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 290 (589)
|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|+++. ..+...|..+..
T Consensus 274 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 352 (537)
T 3fp2_A 274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLAC 352 (537)
T ss_dssp CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 668888899999999999999999999999886 6678899999999999999999999999886 346789999999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCc----chHHHHHHHHhhc-
Q 043490 291 AYALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQL----DHYACMVDLLGRV- 363 (589)
Q Consensus 291 ~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~- 363 (589)
.|...|++++|++.|+++ ...|+ ...+..+...+...|++++|.+.|+.+.+...-.++. ..+..+...|.+.
T Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 432 (537)
T 3fp2_A 353 LLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQS 432 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 55554 5688889999999999999999999986543211211 1234445677777
Q ss_pred ---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHH
Q 043490 364 ---------GRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFV 420 (589)
Q Consensus 364 ---------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 420 (589)
|++++|...|+++ ...| +..+|..+...+...|++++|...++++.++.|.+.....
T Consensus 433 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 433 SQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred hccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999988 3345 4888999999999999999999999999999997765543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=4.2e-18 Score=169.88 Aligned_cols=307 Identities=11% Similarity=0.034 Sum_probs=227.2
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-
Q 043490 72 NVVSWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK- 150 (589)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~- 150 (589)
|+..|..+...+.+.|++++|+..|+++.+. .+.+...+..+...|..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-------------------------------~p~~~~~~~~~a~~~~~~ 50 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-------------------------------DPDNYIAYYRRATVFLAM 50 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------CTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------------------------------CcccHHHHHHHHHHHHHc
Confidence 3456777888888999999999999888754 12345667777788888
Q ss_pred CCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----CHHHHHHH-
Q 043490 151 SCADEAWKVFENMEF--R-NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAP----DWCTFSIV- 222 (589)
Q Consensus 151 g~~~~A~~lf~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~l- 222 (589)
|++++|...|++..+ | +...|..+...| ...|++++|+..|++..+. .| +...+..+
T Consensus 51 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~ 115 (359)
T 3ieg_A 51 GKSKAALPDLTKVIALKMDFTAARLQRGHLL-------------LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLV 115 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------------HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcchHHHHHHHHH-------------HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHH
Confidence 999999999988653 3 567788888888 8889999999999988874 34 33333333
Q ss_pred -----------HHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHH
Q 043490 223 -----------LKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSI 288 (589)
Q Consensus 223 -----------l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 288 (589)
...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. ..+..+|..+
T Consensus 116 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 194 (359)
T 3ieg_A 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKI 194 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 466778888888888888888775 5677788888888888888888888888765 3466788888
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHH------------HHHHHHhccCcHHHHHHHHHHhHHhcCCccCc----
Q 043490 289 LKAYALHGQAKEALQLFSNM-NVQPDSA-TFV------------SLLSACSHAGLVQEGNKVFHSMLENHGVVPQL---- 350 (589)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m-~~~p~~~-t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---- 350 (589)
...|...|++++|...|++. ...|+.. ++. .+...+...|++++|.+.++.+.+. .|+.
T Consensus 195 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~ 271 (359)
T 3ieg_A 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYT 271 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHH
Confidence 88888888888888888888 5555432 222 2255577788888888888877654 2332
Q ss_pred -chHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhh
Q 043490 351 -DHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYC 427 (589)
Q Consensus 351 -~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 427 (589)
..+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++.+++|++...+..+..++.
T Consensus 272 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 272 VRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 22445667777888888888888777 3344 47777788888888888888888888888888877777776666654
Q ss_pred h
Q 043490 428 L 428 (589)
Q Consensus 428 ~ 428 (589)
.
T Consensus 352 ~ 352 (359)
T 3ieg_A 352 L 352 (359)
T ss_dssp H
T ss_pred H
Confidence 3
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=2.7e-17 Score=163.99 Aligned_cols=292 Identities=12% Similarity=0.052 Sum_probs=244.8
Q ss_pred chhHHHHHHHHHhc-CCHHHHHHHHhhCCC---CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 043490 137 HVYVANALINMYSK-SCADEAWKVFENMEF---RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGM 212 (589)
Q Consensus 137 ~~~~~~~li~~y~~-g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~ 212 (589)
++..+..+...+.+ |++++|...|+++.+ .+...|..+...+ ...|++++|+..|+++.+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~-------------~~~~~~~~A~~~~~~~~~~~- 67 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVF-------------LAMGKSKAALPDLTKVIALK- 67 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------------HHHTCHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH-------------HHccCHHHHHHHHHHHHHhC-
Confidence 34556677788888 999999999998753 4577888888888 99999999999999998763
Q ss_pred CCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCC---CcHHHHHHH------------HHHHHhcCCHHHHHHHHhhc
Q 043490 213 APDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFE---DDTVIANAL------------IHAYARCGSISLSKQVFDKM 277 (589)
Q Consensus 213 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~ 277 (589)
+.+...+..+...+...|+++.|...+..+.+.. + .+...+..+ ...+...|++++|...|+++
T Consensus 68 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 146 (359)
T 3ieg_A 68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI 146 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3366888999999999999999999999998764 3 355555555 58899999999999999987
Q ss_pred C---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcc-
Q 043490 278 T---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLD- 351 (589)
Q Consensus 278 ~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~- 351 (589)
. ..+...|..+...|...|++++|+..|+++ ...| +..++..+...+...|++++|.+.++...+. .|+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~ 223 (359)
T 3ieg_A 147 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKR 223 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHH
T ss_pred HHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchH
Confidence 6 457788999999999999999999999999 6666 5678889999999999999999999998754 34322
Q ss_pred hHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 043490 352 HYA------------CMVDLLGRVGRILEAEKLIREM-PMEPD-S----VIWSVLLGSCRKHGETRLAELAATKLKQLEP 413 (589)
Q Consensus 352 ~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 413 (589)
.+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|...++++.+.+|
T Consensus 224 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 303 (359)
T 3ieg_A 224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP 303 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 222 2366789999999999999988 33344 3 3355677899999999999999999999999
Q ss_pred CChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 414 GDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 414 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
.++.++..++.+|...|++++|...+++..+..
T Consensus 304 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999988754
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.4e-17 Score=162.44 Aligned_cols=285 Identities=13% Similarity=0.045 Sum_probs=233.8
Q ss_pred CCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCC---CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043490 134 LDAHVYVANALINMYSK-SCADEAWKVFENMEF---RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQR 209 (589)
Q Consensus 134 ~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~ 209 (589)
.+.+..++..+...+.. |++++|.++|+++.+ .+...+..++..+ ...|++++|+.+++++.+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~-------------~~~~~~~~A~~~~~~~~~ 84 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL-------------VELNKANELFYLSHKLVD 84 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHH-------------HHHTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHH-------------HHhhhHHHHHHHHHHHHH
Confidence 35566677778888888 999999999998753 3455667777777 888999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHH
Q 043490 210 EGMAPDWCTFSIVLKACAGLV-TERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSW 285 (589)
Q Consensus 210 ~g~~p~~~t~~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 285 (589)
.. +.+...+..+...+...| +++.|.+.+..+.+.. +.+...+..+...|...|++++|...|+++. ..+..+|
T Consensus 85 ~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 162 (330)
T 3hym_B 85 LY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM 162 (330)
T ss_dssp HC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHH
T ss_pred hC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHH
Confidence 53 335677888888888889 9999999999998875 5567889999999999999999999999876 3456788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-------ccCcchHHHH
Q 043490 286 NSILKAYALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGV-------VPQLDHYACM 356 (589)
Q Consensus 286 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-------~p~~~~~~~l 356 (589)
..+...|...|++++|++.|++. ...|+ ..++..+...+...|++++|.+.++...+...- ..+...+..+
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 242 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNL 242 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHH
Confidence 88999999999999999999999 66664 578888889999999999999999888654211 2345688899
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHh-hhcCChH
Q 043490 357 VDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIY-CLSGSFN 433 (589)
Q Consensus 357 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 433 (589)
...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+.+|+++..+..+..++ ...|+.+
T Consensus 243 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 243 GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999999887 3334 4788889999999999999999999999999999999999999888 5556543
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=6.7e-18 Score=167.22 Aligned_cols=345 Identities=15% Similarity=0.112 Sum_probs=171.7
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHH
Q 043490 17 LHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHGNAEECFRLF 96 (589)
Q Consensus 17 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 96 (589)
+.|++++|.+.++++ +++.+|..|..++.+.|++++|++.|.+. +|...|..++.++...|++++|+..+
T Consensus 15 ~~~~ld~A~~fae~~--------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERC--------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC--------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 456788888888777 23347888888888888888888888654 56678888888888888888888866
Q ss_pred HHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCCCChhHHHHHH
Q 043490 97 CSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFENMEFRNVISWNSMI 175 (589)
Q Consensus 97 ~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~~~~~~~~~li 175 (589)
+..++. .+++.+.+.|+.+|.+ |+++++.++++. |+..+|+.+.
T Consensus 85 ~~ark~--------------------------------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IG 129 (449)
T 1b89_A 85 QMARKK--------------------------------ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVG 129 (449)
T ss_dssp --------------------------------------------------------CHHHHTTTTTC---C---------
T ss_pred HHHHHh--------------------------------CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHH
Confidence 655443 4556778899999999 999999888864 7778999999
Q ss_pred HHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHH
Q 043490 176 AAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIAN 255 (589)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 255 (589)
..| ...|++++|..+|.++ ..|..+..++.+.|++++|.+.+..+ .++.+|.
T Consensus 130 d~~-------------~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk 181 (449)
T 1b89_A 130 DRC-------------YDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 181 (449)
T ss_dssp --------------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHH
T ss_pred HHH-------------HHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHH
Confidence 999 8888888888888766 37889999999999999999999887 3789999
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHh--ccCcHH
Q 043490 256 ALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDS-ATFVSLLSACS--HAGLVQ 331 (589)
Q Consensus 256 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~t~~~ll~a~~--~~g~~~ 331 (589)
.++.+|...|+++.|......+. .++.....++..|.+.|++++|+.+++.. +..|.. ..|+.+.-+++ +.+++.
T Consensus 182 ~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ 260 (449)
T 1b89_A 182 EVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMR 260 (449)
T ss_dssp HHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999988877765 45555557899999999999999999999 777643 35555555554 456666
Q ss_pred HHHHHHHHhHHhcCCcc------CcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043490 332 EGNKVFHSMLENHGVVP------QLDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAA 405 (589)
Q Consensus 332 ~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 405 (589)
+..+.|. .+-+++| +...|.-++-.|..-++++.|...+-+-+ |+..--..+.....+-.+.+.--++.
T Consensus 261 ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai 335 (449)
T 1b89_A 261 EHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAI 335 (449)
T ss_dssp HHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHH
T ss_pred HHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHH
Confidence 6666664 3336665 67899999999999999999988766552 22222223334445555555555555
Q ss_pred HHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 406 TKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 406 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
.-.++..| ...+.|+.++...=+...+.+++++..
T Consensus 336 ~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 336 QFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred HHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 44444444 456666666666666666666665543
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=8.8e-16 Score=162.24 Aligned_cols=404 Identities=9% Similarity=0.067 Sum_probs=280.5
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCcchHHHHHH
Q 043490 4 STQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--RNVVSWTALIS 81 (589)
Q Consensus 4 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~ 81 (589)
|..+|..++.. .+.|++++|+.+++.+++.+| .+...|..++..+.+.|++++|+++|++..+ |++..|...+.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P---~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFP---SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 55677778874 678889999999999888777 7888888899998889999999999988764 67677777765
Q ss_pred HH-HhCCChhHHHH----HHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCC-chhHHHHHHHHH-------
Q 043490 82 GY-AQHGNAEECFR----LFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDA-HVYVANALINMY------- 148 (589)
Q Consensus 82 ~~-~~~g~~~~A~~----~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~-~~~~~~~li~~y------- 148 (589)
.. ...|+.++|.+ +|+..... .|..| +...|...+...
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~-----------------------------~g~~~~~~~~w~~~~~~~~~~~~~~ 138 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDK-----------------------------IGMEIMSYQIWVDYINFLKGVEAVG 138 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHH-----------------------------TTTSTTCHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHH-----------------------------CCCCcccHHHHHHHHHHHhcCCCcc
Confidence 33 34677777665 44444332 12222 234444444433
Q ss_pred --hc-CCHHHHHHHHhhCCC-CCh---hHHHHHHHHHHcCCcHHHHHHHH-HHcCCHHHHHHHHHHHH------HcC---
Q 043490 149 --SK-SCADEAWKVFENMEF-RNV---ISWNSMIAAFRACKLEAQAIELF-AKMKNEEEALFLFRQLQ------REG--- 211 (589)
Q Consensus 149 --~~-g~~~~A~~lf~~m~~-~~~---~~~~~li~~~~~~g~~~~a~~~~-~~~g~~~~A~~~~~~m~------~~g--- 211 (589)
.+ |+++.|+++|++... |+. ..|.......-..|. ..+..++ .+.+++++|..++.++. +..
T Consensus 139 ~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~ 217 (530)
T 2ooe_A 139 SYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPS 217 (530)
T ss_dssp STTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCC
T ss_pred cHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 34 788999999998654 321 234332221100010 0011111 12345666776666532 111
Q ss_pred CCCCH--------HHHHHHHHHHhC----cCcH----HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-------cCCHH
Q 043490 212 MAPDW--------CTFSIVLKACAG----LVTE----RHASAVHSLIAKYGFEDDTVIANALIHAYAR-------CGSIS 268 (589)
Q Consensus 212 ~~p~~--------~t~~~ll~a~~~----~~~~----~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~~ 268 (589)
++|+. ..|...+.-... .++. +.+..+++.+++.. +.+..+|..++..+.+ .|+++
T Consensus 218 ~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~ 296 (530)
T 2ooe_A 218 VPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMN 296 (530)
T ss_dssp CCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchh
Confidence 24441 344444433221 1222 46778888888764 6678889888888876 69977
Q ss_pred -------HHHHHHhhcCC---C-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH--HHHHHHHHHHhccCcHHHHH
Q 043490 269 -------LSKQVFDKMTY---H-DLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDS--ATFVSLLSACSHAGLVQEGN 334 (589)
Q Consensus 269 -------~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~--~t~~~ll~a~~~~g~~~~a~ 334 (589)
+|..+|++... | +...|..++..+.+.|++++|..+|+++ .+.|+. ..|...+..+.+.|++++|.
T Consensus 297 ~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 297 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHH
Confidence 89999998763 3 5778999999999999999999999999 777763 47888888888899999999
Q ss_pred HHHHHhHHhcCCccC-cchHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 043490 335 KVFHSMLENHGVVPQ-LDHYACMVDL-LGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQ 410 (589)
Q Consensus 335 ~~~~~~~~~~~~~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 410 (589)
++|+...+. .|+ ...|.....+ +...|+.++|..+|++. ...| +...|..++..+.+.|+.+.|..+|+++++
T Consensus 377 ~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 377 MIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 999988643 343 2233322222 34689999999999987 3345 488999999999999999999999999999
Q ss_pred cCCCChh----HHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 411 LEPGDSL----GFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 411 ~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
..|.++. .|...+......|+.+.+.++.+++.+.
T Consensus 454 ~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 454 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8765554 6777888888899999999999988753
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=3.3e-17 Score=164.37 Aligned_cols=276 Identities=12% Similarity=0.006 Sum_probs=225.0
Q ss_pred Hhc-CCHHHHHH-HHhhCCC-----C--ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043490 148 YSK-SCADEAWK-VFENMEF-----R--NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCT 218 (589)
Q Consensus 148 y~~-g~~~~A~~-lf~~m~~-----~--~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 218 (589)
|.- |++++|.. .|++... | +...|..+...+ .+.|++++|+..|+++.+.. +.+..+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------------~~~g~~~~A~~~~~~al~~~-p~~~~~ 100 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRR-------------LQEGDLPNAVLLFEAAVQQD-PKHMEA 100 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHH-------------HHTTCHHHHHHHHHHHHHSC-TTCHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHH-------------HHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 444 78888888 8876542 1 356688888888 99999999999999999864 446778
Q ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHH--------
Q 043490 219 FSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTY--H-DLVSWNS-------- 287 (589)
Q Consensus 219 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~-------- 287 (589)
+..+..++...|+++.|...+..+++.. +.+..++..+...|...|++++|...|+++.. | +...+..
T Consensus 101 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (368)
T 1fch_A 101 WQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA 179 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhh
Confidence 8899999999999999999999999886 66888999999999999999999999998762 2 2222221
Q ss_pred -------HHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHH
Q 043490 288 -------ILKAYALHGQAKEALQLFSNM-NVQPD---SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYAC 355 (589)
Q Consensus 288 -------li~~~~~~g~~~~A~~~~~~m-~~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 355 (589)
.+..+...|++++|+..|+++ ...|+ ..++..+...+...|++++|.+.++.+.+. .| +...+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~ 256 (368)
T 1fch_A 180 GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNK 256 (368)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHH
Confidence 233444899999999999999 55555 778999999999999999999999998764 34 5678999
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-----------hhHHHHH
Q 043490 356 MVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGD-----------SLGFVQM 422 (589)
Q Consensus 356 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l 422 (589)
+...|.+.|++++|.+.|+++ ...| +..+|..+...+...|++++|...++++.++.|.+ ..+|..+
T Consensus 257 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l 336 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL 336 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHH
Confidence 999999999999999999988 4445 48899999999999999999999999999988876 7889999
Q ss_pred HHHhhhcCChHHHHHHHHH
Q 043490 423 SNIYCLSGSFNKARLIRKE 441 (589)
Q Consensus 423 ~~~~~~~g~~~~a~~~~~~ 441 (589)
+.+|...|++++|..++++
T Consensus 337 ~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 337 RLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHhCChHhHHHhHHH
Confidence 9999999999999998763
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.5e-16 Score=156.76 Aligned_cols=262 Identities=13% Similarity=0.044 Sum_probs=225.7
Q ss_pred CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Q 043490 166 RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKY 245 (589)
Q Consensus 166 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 245 (589)
.+...+..+...+ ...|++++|+++|+++.... +.+...+..++..+...|++++|..++..+.+.
T Consensus 20 ~~~~~~~~~a~~~-------------~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 85 (330)
T 3hym_B 20 ENLDVVVSLAERH-------------YYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL 85 (330)
T ss_dssp CCCTTHHHHHHHH-------------HHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3555666777777 88899999999999998764 334456666778888999999999999999987
Q ss_pred CCCCcHHHHHHHHHHHHhcC-CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 043490 246 GFEDDTVIANALIHAYARCG-SISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPD-SATFVS 319 (589)
Q Consensus 246 g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ 319 (589)
. +.+..++..+...|...| ++++|...|++.. ..+...|..+...|...|++++|++.|+++ ...|+ ..++..
T Consensus 86 ~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 164 (330)
T 3hym_B 86 Y-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164 (330)
T ss_dssp C-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred C-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHH
Confidence 5 667888999999999999 9999999999876 345678999999999999999999999999 55554 567777
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CC----------CCCHHHHHH
Q 043490 320 LLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PM----------EPDSVIWSV 387 (589)
Q Consensus 320 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~ 387 (589)
+...+...|++++|.+.++...+. .| +...+..+...|.+.|++++|...++++ .. ..+..+|..
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSI---APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHH
Confidence 889999999999999999998643 34 5678899999999999999999999887 11 233678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 388 LLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 388 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
+...+...|++++|...++++.+..|.+..++..++.+|.+.|++++|.+.+++..+.
T Consensus 242 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999987654
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=2.3e-18 Score=170.53 Aligned_cols=301 Identities=14% Similarity=0.135 Sum_probs=150.0
Q ss_pred HhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHh
Q 043490 53 AKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKF 132 (589)
Q Consensus 53 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~ 132 (589)
-+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--------------------------------- 58 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--------------------------------- 58 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC---------------------------------
Confidence 37789999999999997664 9999999999999999999999542
Q ss_pred cCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCC--CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043490 133 SLDAHVYVANALINMYSK-SCADEAWKVFENMEF--RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQR 209 (589)
Q Consensus 133 g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~ 209 (589)
+|...|..++..+.. |++++|.+.++...+ +++.+.+.++.+| .+.|+++++.++++
T Consensus 59 ---~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y-------------~Klg~l~e~e~f~~---- 118 (449)
T 1b89_A 59 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL-------------AKTNRLAELEEFIN---- 118 (449)
T ss_dssp ------------------------------------------------------------------CHHHHTTTTT----
T ss_pred ---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHH-------------HHhCCHHHHHHHHc----
Confidence 345566777778888 999999997776653 4567899999999 88888888877774
Q ss_pred cCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHH
Q 043490 210 EGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSIL 289 (589)
Q Consensus 210 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 289 (589)
.|+..+|..+...|...|.++.|...|..+ ..|..|++.+.+.|++++|.+.+.++ .++.+|..++
T Consensus 119 ---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~ 184 (449)
T 1b89_A 119 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVC 184 (449)
T ss_dssp ---CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHH
Confidence 477889999999999999999999999966 46899999999999999999999999 4899999999
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhh--cCCH
Q 043490 290 KAYALHGQAKEALQLFSNMNVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGR--VGRI 366 (589)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~--~g~~ 366 (589)
.+|...|+++.|......+.+.|+. ...++..|.+.|.+++|..+++..+ ++.+ ....|+-|.-+|++ -+++
T Consensus 185 ~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL---~le~ah~~~ftel~il~~ky~p~k~ 259 (449)
T 1b89_A 185 FACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKM 259 (449)
T ss_dssp HHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHT---TSTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHh---CCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999997776665555554 4468889999999999999998765 5544 34467777777765 5678
Q ss_pred HHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc------------CCCChhHHHHHHHHhh
Q 043490 367 LEAEKLIREM-PMEP------DSVIWSVLLGSCRKHGETRLAELAATKLKQL------------EPGDSLGFVQMSNIYC 427 (589)
Q Consensus 367 ~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------------~p~~~~~~~~l~~~~~ 427 (589)
.+.++.|..- .+.| +...|..+...|...++++.|....-.-... .+.+...|...+.-|.
T Consensus 260 ~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 260 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 8888877644 4444 4677999999999999999887643222111 3456677777777776
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=8e-15 Score=154.86 Aligned_cols=376 Identities=10% Similarity=0.030 Sum_probs=263.8
Q ss_pred HHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHhccC
Q 043490 28 HEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--R-NVVSWTALISGYAQHGNAEECFRLFCSLLQYFF 104 (589)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 104 (589)
++..++..| .+..+|..++. +.+.|++++|+.+|+++.+ | +...|..++..+.+.|++++|..+|++.+..
T Consensus 2 le~al~~~P---~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~-- 75 (530)
T 2ooe_A 2 AEKKLEENP---YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK-- 75 (530)
T ss_dssp HHHHHHHCT---TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--
T ss_pred hhhHhhhCC---CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Confidence 455566566 78899999998 4789999999999999865 4 5568999999999999999999999999875
Q ss_pred CCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHH-hc-CCHHHHHH----HHhhCC------CCChhHHH
Q 043490 105 PNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMY-SK-SCADEAWK----VFENME------FRNVISWN 172 (589)
Q Consensus 105 p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y-~~-g~~~~A~~----lf~~m~------~~~~~~~~ 172 (589)
.|+...|..++... .. |+.+.|++ +|+... .++...|.
T Consensus 76 ------------------------------~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~ 125 (530)
T 2ooe_A 76 ------------------------------VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWV 125 (530)
T ss_dssp ------------------------------CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHH
T ss_pred ------------------------------CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence 34444555555322 23 55554443 665432 13566787
Q ss_pred HHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---H----------hCcCcHHHHHHHH
Q 043490 173 SMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKA---C----------AGLVTERHASAVH 239 (589)
Q Consensus 173 ~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a---~----------~~~~~~~~a~~i~ 239 (589)
..+....+.... ..+.+.|++++|..+|++.......+....|...... . ...+++..|..++
T Consensus 126 ~~~~~~~~~~~~----~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~ 201 (530)
T 2ooe_A 126 DYINFLKGVEAV----GSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVA 201 (530)
T ss_dssp HHHHHHHHSCCC----SSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHhcCCCc----ccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHH
Confidence 777655110000 0001267788888888888773111112333322211 1 2345677777777
Q ss_pred HHHH------HhC---CCCc--------HHHHHHHHHHHHhc----CCH----HHHHHHHhhcC---CCChhHHHHHHHH
Q 043490 240 SLIA------KYG---FEDD--------TVIANALIHAYARC----GSI----SLSKQVFDKMT---YHDLVSWNSILKA 291 (589)
Q Consensus 240 ~~~~------~~g---~~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~~~---~~~~~~~~~li~~ 291 (589)
.... +.. ++|+ ...|...+..-... ++. +.|..+|++.. ..+...|..++..
T Consensus 202 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~ 281 (530)
T 2ooe_A 202 KEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY 281 (530)
T ss_dssp HHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6532 111 2443 24555555433322 232 36777888776 3567889988888
Q ss_pred HHH-------cCCHH-------HHHHHHHhC-C-CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCc--ch
Q 043490 292 YAL-------HGQAK-------EALQLFSNM-N-VQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQL--DH 352 (589)
Q Consensus 292 ~~~-------~g~~~-------~A~~~~~~m-~-~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~ 352 (589)
+.+ .|+.+ +|..+|++. . +.|+ ...+..++..+...|++++|.++|+.+++ +.|+. ..
T Consensus 282 ~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~ 358 (530)
T 2ooe_A 282 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLV 358 (530)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHH
T ss_pred HHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHH
Confidence 876 69877 999999999 4 6775 56788888899999999999999999875 35543 47
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhc
Q 043490 353 YACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGS-CRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLS 429 (589)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 429 (589)
|..++..+.+.|++++|.++|++. ...|+ ...|...... +...|+.+.|..+|+++++..|+++..+..++..+.+.
T Consensus 359 ~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~ 438 (530)
T 2ooe_A 359 YIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL 438 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhC
Confidence 888899999999999999999998 43443 3333222222 34689999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCC
Q 043490 430 GSFNKARLIRKEMKGSR 446 (589)
Q Consensus 430 g~~~~a~~~~~~m~~~~ 446 (589)
|+.++|+.+|++....+
T Consensus 439 g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 439 NEDNNTRVLFERVLTSG 455 (530)
T ss_dssp TCHHHHHHHHHHHHHSC
T ss_pred CCHhhHHHHHHHHHhcc
Confidence 99999999999988764
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=1.1e-16 Score=160.44 Aligned_cols=258 Identities=11% Similarity=-0.025 Sum_probs=215.3
Q ss_pred ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhC
Q 043490 167 NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYG 246 (589)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 246 (589)
+...|..+...+ .+.|++++|+..|+++.... +.+..++..+...+...|+++.|...++.+++..
T Consensus 64 ~~~~~~~~~~~~-------------~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 129 (365)
T 4eqf_A 64 DWPGAFEEGLKR-------------LKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ 129 (365)
T ss_dssp TCTTHHHHHHHH-------------HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHH-------------HHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 456688888888 99999999999999998864 4477899999999999999999999999999886
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------------hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 043490 247 FEDDTVIANALIHAYARCGSISLSKQVFDKMTYHD-------------LVSWNSILKAYALHGQAKEALQLFSNM-NVQP 312 (589)
Q Consensus 247 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 312 (589)
+.+..++..+...|.+.|++++|...|+++.+.+ ...+..+...|...|++++|++.|+++ ...|
T Consensus 130 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 208 (365)
T 4eqf_A 130 -PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG 208 (365)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSC
T ss_pred -CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc
Confidence 6678899999999999999999999999986321 223345688899999999999999999 5555
Q ss_pred ---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 043490 313 ---DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSV 387 (589)
Q Consensus 313 ---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ 387 (589)
+..++..+...+...|++++|.+.|+.+.+.. +.+..+|..+...|.+.|++++|.+.|+++ ...|+ ..+|..
T Consensus 209 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 286 (365)
T 4eqf_A 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN 286 (365)
T ss_dssp SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHH
Confidence 57889999999999999999999999987642 235678999999999999999999999988 44554 889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCC------------ChhHHHHHHHHhhhcCChHHHHHHHHH
Q 043490 388 LLGSCRKHGETRLAELAATKLKQLEPG------------DSLGFVQMSNIYCLSGSFNKARLIRKE 441 (589)
Q Consensus 388 ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 441 (589)
+..+|...|++++|...++++.++.|. +...|..|..++...|+.+.+.++.++
T Consensus 287 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 287 LGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999999999999988765 367789999999999999998887654
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=1.5e-14 Score=151.16 Aligned_cols=266 Identities=10% Similarity=-0.024 Sum_probs=169.9
Q ss_pred hhHHHHHHHHHhc-----CCHHHHHHHHhhCCC-CChhHHHHHHHHHHcCCcHHHHHHHHHH----cCCHHHHHHHHHHH
Q 043490 138 VYVANALINMYSK-----SCADEAWKVFENMEF-RNVISWNSMIAAFRACKLEAQAIELFAK----MKNEEEALFLFRQL 207 (589)
Q Consensus 138 ~~~~~~li~~y~~-----g~~~~A~~lf~~m~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~----~g~~~~A~~~~~~m 207 (589)
...+..|..+|.. ++.++|...|++..+ .+..++..+...| .. .+++++|++.|++.
T Consensus 147 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y-------------~~g~g~~~~~~~A~~~~~~a 213 (490)
T 2xm6_A 147 DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMY-------------SRGLGVERNDAISAQWYRKS 213 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------HHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-------------hcCCCCCcCHHHHHHHHHHH
Confidence 3444445555542 467777777776543 3556666666666 55 67777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHhC----cCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHhhcCC
Q 043490 208 QREGMAPDWCTFSIVLKACAG----LVTERHASAVHSLIAKYGFEDDTVIANALIHAYAR----CGSISLSKQVFDKMTY 279 (589)
Q Consensus 208 ~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~ 279 (589)
.+.| +...+..+...+.. .++.++|...+....+.| +...+..|..+|.. .++.++|...|++..+
T Consensus 214 ~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~ 287 (490)
T 2xm6_A 214 ATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE 287 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Confidence 6654 44555555555543 667777777777777654 44556666666766 6777777777777653
Q ss_pred -CChhHHHHHHHHHHHc-----CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCccC
Q 043490 280 -HDLVSWNSILKAYALH-----GQAKEALQLFSNM-NVQPDSATFVSLLSACSHAG---LVQEGNKVFHSMLENHGVVPQ 349 (589)
Q Consensus 280 -~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~ 349 (589)
.+..++..+...|... ++.++|+..|++. .. .+...+..+...+...| +.++|.++|+...+. .+
T Consensus 288 ~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~ 362 (490)
T 2xm6_A 288 QGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GE 362 (490)
T ss_dssp TTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TC
T ss_pred cCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CC
Confidence 3556666777777766 7777777777777 22 23445555555555544 677777777776542 34
Q ss_pred cchHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCC---ChhH
Q 043490 350 LDHYACMVDLLGR----VGRILEAEKLIREMPMEPDSVIWSVLLGSCRK----HGETRLAELAATKLKQLEPG---DSLG 418 (589)
Q Consensus 350 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~ 418 (589)
...+..|..+|.. .+++++|.+.|++.--..+...+..|...|.. .++.++|...++++.+.+|+ ++..
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a 442 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENR 442 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHH
Confidence 5566677777776 67777777777776212356667777777776 67778888887777777743 4445
Q ss_pred HHHHHHHhh
Q 043490 419 FVQMSNIYC 427 (589)
Q Consensus 419 ~~~l~~~~~ 427 (589)
...|..++.
T Consensus 443 ~~~l~~~~~ 451 (490)
T 2xm6_A 443 NITEKKLTA 451 (490)
T ss_dssp HHHHTTSCH
T ss_pred HHHHHhcCH
Confidence 555544443
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=2.8e-15 Score=144.95 Aligned_cols=267 Identities=11% Similarity=0.040 Sum_probs=214.0
Q ss_pred HhcCCHHHHHHHHhhCCCCCh----hHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043490 148 YSKSCADEAWKVFENMEFRNV----ISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVL 223 (589)
Q Consensus 148 y~~g~~~~A~~lf~~m~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 223 (589)
|..|++..|...++.....++ ...-.+..+| ...|++++|+..++. .-+|+..++..+.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~y-------------i~~g~~~~al~~~~~----~~~~~~~a~~~la 72 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAY-------------LAQRKYGVVLDEIKP----SSAPELQAVRMFA 72 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHH-------------HHTTCHHHHHHHSCT----TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHH-------------HHCCCHHHHHHHhcc----cCChhHHHHHHHH
Confidence 334999999999988765432 2345567788 888888888876654 2356778888999
Q ss_pred HHHhCcCcHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHH
Q 043490 224 KACAGLVTERHASAVHSLIAKYGF-EDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEAL 302 (589)
Q Consensus 224 ~a~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 302 (589)
..+...++.+.|.+.++.+.+.+. +.+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|+.++|.
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999998874 55677788888999999999999999999 567889999999999999999999
Q ss_pred HHHHhC-CCCCCHHHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 043490 303 QLFSNM-NVQPDSATF---VSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-P 377 (589)
Q Consensus 303 ~~~~~m-~~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 377 (589)
+.|+++ ...|+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..+|.+.|++++|.+.|++. .
T Consensus 151 ~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 151 KELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999 667775422 123344456699999999999998752 446778999999999999999999999997 4
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHH-HHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHH
Q 043490 378 MEP-DSVIWSVLLGSCRKHGETRL-AELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIR 439 (589)
Q Consensus 378 ~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 439 (589)
..| +..+|..++..+...|+.++ +.++++++.+.+|+++.+ .+...+.+.++++..-|
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 456 48889999999999999875 678999999999988754 34556666666655443
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=1.5e-16 Score=159.55 Aligned_cols=253 Identities=12% Similarity=0.043 Sum_probs=203.0
Q ss_pred HHcCCHHHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH
Q 043490 192 AKMKNEEEALF-LFRQLQREGM-AP--DWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSI 267 (589)
Q Consensus 192 ~~~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 267 (589)
...|++++|++ .|++...... .| +...+..+...+...|+++.|...+..+++.. +.+..++..+...|.+.|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 45677788877 7765543211 11 34567788888999999999999999999876 67888999999999999999
Q ss_pred HHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHH-H---------------HHHHHhcc
Q 043490 268 SLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDSATFV-S---------------LLSACSHA 327 (589)
Q Consensus 268 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~-~---------------ll~a~~~~ 327 (589)
++|...|+++. ..+..+|..+...|...|++++|++.|+++ ...|+..... . .+..+...
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 99999999876 457789999999999999999999999999 5555433221 1 23334488
Q ss_pred CcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 043490 328 GLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAA 405 (589)
Q Consensus 328 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 405 (589)
|++++|.+.|+.+.+...-.++..++..+...|.+.|++++|...++++ ...| +..+|..+...+...|++++|...+
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999765332224678999999999999999999999988 3345 4889999999999999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 406 TKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 406 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
+++.+..|.++.++..++.+|.+.|++++|...+++..+.
T Consensus 275 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 275 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988753
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=3.7e-16 Score=156.68 Aligned_cols=230 Identities=11% Similarity=0.036 Sum_probs=195.5
Q ss_pred CHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHH
Q 043490 215 DWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKA 291 (589)
Q Consensus 215 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 291 (589)
+...+..+...+.+.|+++.|...++.+++.. +.+..++..+...|.+.|++++|...|+++. ..+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34557888888999999999999999999886 6788999999999999999999999999886 4567899999999
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCCH-----------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHH
Q 043490 292 YALHGQAKEALQLFSNM-NVQPDS-----------ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDL 359 (589)
Q Consensus 292 ~~~~g~~~~A~~~~~~m-~~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 359 (589)
|...|++++|++.|+++ ...|+. ..+..+...+...|++++|.++++.+.+...-.++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 99999999999999999 555543 233445778899999999999999998764332357789999999
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHH
Q 043490 360 LGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARL 437 (589)
Q Consensus 360 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 437 (589)
|.+.|++++|.+.|+++ ...| +..+|..+..+|...|++++|+..++++.+..|.++.++..++.+|.+.|++++|..
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999988 3345 588999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 043490 438 IRKEMKGS 445 (589)
Q Consensus 438 ~~~~m~~~ 445 (589)
.+++..+.
T Consensus 303 ~~~~al~~ 310 (365)
T 4eqf_A 303 NFLTALSL 310 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998753
No 27
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=1.8e-13 Score=150.61 Aligned_cols=379 Identities=10% Similarity=0.034 Sum_probs=271.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhC
Q 043490 7 IYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALISGYAQH 86 (589)
Q Consensus 7 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 86 (589)
-.+...+++...|.+.+|.++++.++-.......+....+.|+....+. +.....+..++...-+ ...+...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISN 1062 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhC
Confidence 3455677777888888888888887733000013456666677666666 4455555554444222 44467778888
Q ss_pred CChhHHHHHHHHHHhccCCCceeHHHHHHHhc-hhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCC
Q 043490 87 GNAEECFRLFCSLLQYFFPNEFSLASVLISCD-YLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFENME 164 (589)
Q Consensus 87 g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~-~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~ 164 (589)
|.+++|..+|++.... ......++.... ++.+..+...+ .+..+|..+..++.+ |++++|...|.+.
T Consensus 1063 glyEEAf~IYkKa~~~----~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDVN----TSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred CCHHHHHHHHHHcCCH----HHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 9999999999886321 111122232222 34433333322 346777788888888 8888888888664
Q ss_pred CCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Q 043490 165 FRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAK 244 (589)
Q Consensus 165 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 244 (589)
.|...|..++..+ .+.|++++|++.|...++.. +++...+.+..+|++.++++....+. +
T Consensus 1132 -dD~say~eVa~~~-------------~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAA-------------NTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred -CChHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 5666677777777 88889999999998776654 33333335888899998888644442 2
Q ss_pred hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043490 245 YGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNMNVQPDSATFVSLLSAC 324 (589)
Q Consensus 245 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~ 324 (589)
.++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|++.+++. .+..+|..+-.+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA---~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFAC 1260 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh---CCHHHHHHHHHHH
Confidence 445666778999999999999999999986 48999999999999999999999986 4568999999999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc--CCHHH
Q 043490 325 SHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKH--GETRL 400 (589)
Q Consensus 325 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~--g~~~~ 400 (589)
...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.. +..|. ...|+-|...+.+. ++..+
T Consensus 1261 ve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred hhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHH
Confidence 9999999998876432 345667889999999999999999999877 55554 66787777777765 45556
Q ss_pred HHHHHHHHhhcCC-----CChhHHHHHHHHhhhcCChHHHHH
Q 043490 401 AELAATKLKQLEP-----GDSLGFVQMSNIYCLSGSFNKARL 437 (589)
Q Consensus 401 a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 437 (589)
+.+.|..-..+.| .+...|.-+...|.+.|+|+.|..
T Consensus 1335 hlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1335 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 6666665555444 467789999999999999999984
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=4.8e-15 Score=154.05 Aligned_cols=367 Identities=12% Similarity=-0.022 Sum_probs=238.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCC-----------CC-CcchHHHHHHHHHhCCChhHHHHHHHHHHhc--cCC
Q 043490 40 QDLFVTNHLINMYAKFGYLDDARHLFDEMP-----------KR-NVVSWTALISGYAQHGNAEECFRLFCSLLQY--FFP 105 (589)
Q Consensus 40 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-----------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p 105 (589)
.....||.|...|...|+.++|++.|++.. .| ..++|+.+...|...|++++|...|++..+. ..+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 445679999999999999999999987642 22 4568999999999999999999999887643 001
Q ss_pred CceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc---CCHHHHHHHHhhCC--CC-ChhHHHHHHHHHH
Q 043490 106 NEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK---SCADEAWKVFENME--FR-NVISWNSMIAAFR 179 (589)
Q Consensus 106 ~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~---g~~~~A~~lf~~m~--~~-~~~~~~~li~~~~ 179 (589)
+.. -.....+++.+...+.+ +++++|...|++.. .| +...+..+...+.
T Consensus 129 ~~~-------------------------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~ 183 (472)
T 4g1t_A 129 SPY-------------------------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY 183 (472)
T ss_dssp CSS-------------------------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred ccc-------------------------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 000 01122334333333333 57899999999865 34 4455555544431
Q ss_pred cCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----CcCcHHHHHHHHHHHHHhCCCCcHHHHH
Q 043490 180 ACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACA----GLVTERHASAVHSLIAKYGFEDDTVIAN 255 (589)
Q Consensus 180 ~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 255 (589)
.+...++.++|++.|++..+.. +.+...+..+...+. ..++.+.|.+.++...+.. +.+..++.
T Consensus 184 ----------~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~ 251 (472)
T 4g1t_A 184 ----------RLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLR 251 (472)
T ss_dssp ----------HHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHH
T ss_pred ----------HhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHH
Confidence 0145677888999888887753 234555555544443 4467888999999988876 66788899
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHc-------------------CCHHHHHHHHHhC-CCCC
Q 043490 256 ALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALH-------------------GQAKEALQLFSNM-NVQP 312 (589)
Q Consensus 256 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m-~~~p 312 (589)
.+...|.+.|++++|...|++.. +.+..+|..+...|... +..++|+..|++. ...|
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 331 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND 331 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999876 33556777776665432 2356777788777 5555
Q ss_pred C-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcc----hHHHHHH-HHhhcCCHHHHHHHHHhC-CCCCCHHHH
Q 043490 313 D-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLD----HYACMVD-LLGRVGRILEAEKLIREM-PMEPDSVIW 385 (589)
Q Consensus 313 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~ 385 (589)
+ ..++..+...+...|++++|.+.|+...+. .|+.. .+..+.. .+...|+.++|+..|++. .+.|+...+
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~ 408 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK 408 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH
Confidence 4 456778888899999999999999887643 33322 2223322 234678999999998877 566664433
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCccCCceee
Q 043490 386 SVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVRKYPGLSW 455 (589)
Q Consensus 386 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 455 (589)
... ...+.+++++.++.+|.++.+|..|+.+|...|++++|.+.|++..+.+-......+|
T Consensus 409 ~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 409 EKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 222 3445667788888999999999999999999999999999999998876543334455
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=7.9e-16 Score=151.26 Aligned_cols=258 Identities=11% Similarity=-0.007 Sum_probs=216.0
Q ss_pred hhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCC
Q 043490 168 VISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGF 247 (589)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 247 (589)
...|..+...+ ...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...+..+.+..
T Consensus 21 ~~~~~~~a~~~-------------~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 85 (327)
T 3cv0_A 21 HENPMEEGLSM-------------LKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD- 85 (327)
T ss_dssp SSCHHHHHHHH-------------HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHH-------------HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 34566666777 89999999999999998764 3467788889999999999999999999999885
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHH--------------HH-HHHHcCCHHHHHHHHHhC-
Q 043490 248 EDDTVIANALIHAYARCGSISLSKQVFDKMTY--H-DLVSWNSI--------------LK-AYALHGQAKEALQLFSNM- 308 (589)
Q Consensus 248 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m- 308 (589)
+.+..++..+...|...|++++|.+.|+++.. | +...+..+ .. .+...|++++|++.++++
T Consensus 86 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 165 (327)
T 3cv0_A 86 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL 165 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHH
Confidence 66788999999999999999999999998762 2 23333333 22 377889999999999999
Q ss_pred CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 043490 309 NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIW 385 (589)
Q Consensus 309 ~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 385 (589)
...| +..++..+...+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +..+|
T Consensus 166 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 243 (327)
T 3cv0_A 166 EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVM 243 (327)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 5445 56788899999999999999999999987642 235678899999999999999999999987 3344 48899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCC------------ChhHHHHHHHHhhhcCChHHHHHHHHHH
Q 043490 386 SVLLGSCRKHGETRLAELAATKLKQLEPG------------DSLGFVQMSNIYCLSGSFNKARLIRKEM 442 (589)
Q Consensus 386 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 442 (589)
..+...+...|++++|...++++.+..|. +..++..++.+|.+.|++++|..++++.
T Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 244 YNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999999999999987 6888999999999999999999988744
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.69 E-value=1.5e-13 Score=143.57 Aligned_cols=349 Identities=13% Similarity=0.037 Sum_probs=285.3
Q ss_pred CChhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CCcchHHHHHHHHHh----CCChhHHHHHHHHHHhccCCCceeH
Q 043490 40 QDLFVTNHLINMYAK----FGYLDDARHLFDEMPK-RNVVSWTALISGYAQ----HGNAEECFRLFCSLLQYFFPNEFSL 110 (589)
Q Consensus 40 ~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~p~~~t~ 110 (589)
.++..+..|...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|+..|++..+.
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------- 108 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-------- 108 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------
Confidence 678888899999988 8999999999997654 477788889999998 89999999999887653
Q ss_pred HHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-----CCHHHHHHHHhhCCC-CChhHHHHHHHHHHcCCcH
Q 043490 111 ASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK-----SCADEAWKVFENMEF-RNVISWNSMIAAFRACKLE 184 (589)
Q Consensus 111 ~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-----g~~~~A~~lf~~m~~-~~~~~~~~li~~~~~~g~~ 184 (589)
.+...+..|-.+|.. +++++|...|++..+ .+..++..+...|
T Consensus 109 -------------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y------ 157 (490)
T 2xm6_A 109 -------------------------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAY------ 157 (490)
T ss_dssp -------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------
T ss_pred -------------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH------
Confidence 233444445555543 588999999988654 4566777777777
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhC----cCcHHHHHHHHHHHHHhCCCCcHHHHHH
Q 043490 185 AQAIELFAK----MKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAG----LVTERHASAVHSLIAKYGFEDDTVIANA 256 (589)
Q Consensus 185 ~~a~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 256 (589)
.. .+++++|++.|++..+.| +...+..+...+.. .++.++|...+....+.| +...+..
T Consensus 158 -------~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 224 (490)
T 2xm6_A 158 -------FEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLH 224 (490)
T ss_dssp -------HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred -------HcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 65 788999999999988865 66777777777766 899999999999999876 5677888
Q ss_pred HHHHHHh----cCCHHHHHHHHhhcC-CCChhHHHHHHHHHHH----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhc
Q 043490 257 LIHAYAR----CGSISLSKQVFDKMT-YHDLVSWNSILKAYAL----HGQAKEALQLFSNM-NVQPDSATFVSLLSACSH 326 (589)
Q Consensus 257 li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~ 326 (589)
|..+|.. .+++++|...|++.. ..+..++..+...|.. .++.++|++.|++. .. -+...+..+...+..
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-GNSDGQYYLAHLYDK 303 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc
Confidence 8889987 899999999999876 4567788888888888 89999999999998 33 355667777777777
Q ss_pred c-----CcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----
Q 043490 327 A-----GLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVG---RILEAEKLIREMPMEPDSVIWSVLLGSCRK---- 394 (589)
Q Consensus 327 ~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~---- 394 (589)
. ++.++|.+.|+...+. + +...+..|..+|.+.| ++++|.+.|++.--..+...+..|...|..
T Consensus 304 ~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~ 379 (490)
T 2xm6_A 304 GAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGV 379 (490)
T ss_dssp CBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred CCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 6 8999999999988653 2 4457778888888766 889999999988223578889999999998
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhh----cCChHHHHHHHHHHhcCCC
Q 043490 395 HGETRLAELAATKLKQLEPGDSLGFVQMSNIYCL----SGSFNKARLIRKEMKGSRV 447 (589)
Q Consensus 395 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 447 (589)
.+++++|...+++..+.+ ++.++..|..+|.+ .+++++|...|++..+.+.
T Consensus 380 ~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 380 KKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 899999999999998865 57889999999998 8999999999999987763
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=5.6e-15 Score=142.80 Aligned_cols=243 Identities=9% Similarity=0.014 Sum_probs=199.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDW--CTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISL 269 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 269 (589)
...|+++.|+..+++... ..|+. .....+..++...|+.+.|...++. .-+|+..++..+...|.+.|+.++
T Consensus 10 ~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 567899999988876543 34443 3556678899999999999976643 246788889999999999999999
Q ss_pred HHHHHhhcC----CC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 043490 270 SKQVFDKMT----YH-DLVSWNSILKAYALHGQAKEALQLFSNMNVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENH 344 (589)
Q Consensus 270 A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 344 (589)
|.+.++++. .| +...+..+...|.+.|++++|++.|++ ..+...+..+...+.+.|++++|.+.++.+.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 999999864 24 556777888999999999999999998 456778999999999999999999999999765
Q ss_pred CCccCcchH---HHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHH
Q 043490 345 GVVPQLDHY---ACMVDLLGRVGRILEAEKLIREM-PME-PDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGF 419 (589)
Q Consensus 345 ~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 419 (589)
.|+.... ..++..+...|++++|..+|+++ ... .+...|+.+..++.+.|++++|+..++++++.+|+++.++
T Consensus 160 --~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 --DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp --CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred --CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4654311 22344555569999999999998 223 4688999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCChHH-HHHHHHHHhcCC
Q 043490 420 VQMSNIYCLSGSFNK-ARLIRKEMKGSR 446 (589)
Q Consensus 420 ~~l~~~~~~~g~~~~-a~~~~~~m~~~~ 446 (589)
..++.++...|+.++ +.++++++.+.+
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999999999999986 578888887644
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=5.3e-17 Score=173.11 Aligned_cols=150 Identities=11% Similarity=0.166 Sum_probs=125.5
Q ss_pred CCCchhHHHHHHHHHhc-CCHHHHHHHHhhCC-------CCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHH
Q 043490 134 LDAHVYVANALINMYSK-SCADEAWKVFENME-------FRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFR 205 (589)
Q Consensus 134 ~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~ 205 (589)
...-..+||+||++|++ |++++|.++|++|. .||++|||+||.+| ++.|+.++|.++|+
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Gl-------------ck~G~~~eA~~Lf~ 189 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW-------------ARQGAFKELVYVLF 189 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHH-------------HHHTCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHH-------------HhCCCHHHHHHHHH
Confidence 44556799999999999 99999999997763 58999999999999 99999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----
Q 043490 206 QLQREGMAPDWCTFSIVLKACAGLVT-ERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTY----- 279 (589)
Q Consensus 206 ~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 279 (589)
+|.+.|+.||.+||+++|.++++.|. .+.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..
T Consensus 190 eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~ 269 (1134)
T 3spa_A 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269 (1134)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCC
T ss_pred HHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCc
Confidence 99999999999999999999999997 588999999999999999999999999888876655555555444431
Q ss_pred CChhHHHHHHHHHHHcC
Q 043490 280 HDLVSWNSILKAYALHG 296 (589)
Q Consensus 280 ~~~~~~~~li~~~~~~g 296 (589)
+.+.+.+.|...|.+.+
T Consensus 270 ~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 270 PPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCCCCTTTHHHHCCCS
T ss_pred ccccchHHHHHHHccCC
Confidence 11334444556666555
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=1.8e-14 Score=141.42 Aligned_cols=266 Identities=10% Similarity=-0.012 Sum_probs=166.3
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHH
Q 043490 5 TQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK---RNVVSWTALIS 81 (589)
Q Consensus 5 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~ 81 (589)
...+..+...+...|++++|..+++.+.+..| .+..++..+...|...|++++|.+.|+++.+ .+..+|..+..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAP---EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 34566778889999999999999999998866 7888999999999999999999999998753 46778999999
Q ss_pred HHHhCCChhHHHHHHHHHHhccCCCce-eHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHH-HH-HHhc-CCHHHHH
Q 043490 82 GYAQHGNAEECFRLFCSLLQYFFPNEF-SLASVLISCDYLHGKLVHALALKFSLDAHVYVANAL-IN-MYSK-SCADEAW 157 (589)
Q Consensus 82 ~~~~~g~~~~A~~~~~~m~~~~~p~~~-t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~l-i~-~y~~-g~~~~A~ 157 (589)
.|...|++++|++.|+++.+. .|+.. .+..+... .++......+ .. .+.. |++++|.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLS-QPQYEQLGSVNLQA------------------DVDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT-STTTTTC--------------------------------------CCTTSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCccHHHHHHHhHH------------------HHHHHHHHHHHHhHHHHHcccHHHHH
Confidence 999999999999999998875 22211 11111000 0111111111 12 2555 6677777
Q ss_pred HHHhhCCC---CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHH
Q 043490 158 KVFENMEF---RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERH 234 (589)
Q Consensus 158 ~lf~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 234 (589)
..|+++.+ .+...|..+...| ...|++++|++.|+++.... +.+..++..+...+...|++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~la~~~-------------~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 159 TLLHAALEMNPNDAQLHASLGVLY-------------NLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHH-------------HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHH-------------HHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 76666542 2455666666666 66666666666666665542 2234555555555666666666
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-------------ChhHHHHHHHHHHHcCCHH
Q 043490 235 ASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT--YH-------------DLVSWNSILKAYALHGQAK 299 (589)
Q Consensus 235 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-------------~~~~~~~li~~~~~~g~~~ 299 (589)
|...+..+.+.. +.+..++..+...|.+.|++++|.+.|++.. .| +...|..+..++...|+.+
T Consensus 225 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 225 ALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 666666655543 3345555555555555555555555555443 11 2334445555555555555
Q ss_pred HHHHHHHh
Q 043490 300 EALQLFSN 307 (589)
Q Consensus 300 ~A~~~~~~ 307 (589)
+|..++++
T Consensus 304 ~A~~~~~~ 311 (327)
T 3cv0_A 304 LVELTYAQ 311 (327)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHH
Confidence 55555443
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=1.8e-14 Score=149.73 Aligned_cols=364 Identities=11% Similarity=-0.013 Sum_probs=210.0
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHHh----C--CCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--------
Q 043490 5 TQIYATLFHACALHGNIKQAMQLHEHMINN----F--PNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK-------- 70 (589)
Q Consensus 5 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------- 70 (589)
...|+.|...+...|+.++|++.|.+.++. . ...+....+|+.+...|...|++++|...|++..+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456888999999999999999999987653 1 11124457889999999999999999988876531
Q ss_pred --C-CcchHHHHHHHHHhC--CChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHH
Q 043490 71 --R-NVVSWTALISGYAQH--GNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALI 145 (589)
Q Consensus 71 --~-~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li 145 (589)
+ ...+++.+..++... +++++|+..|++..+. .|+...+ +..+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-~p~~~~~------------------------------~~~~~ 179 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-KPKNPEF------------------------------TSGLA 179 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-STTCHHH------------------------------HHHHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-CCCCHHH------------------------------HHHHH
Confidence 1 234566666566554 5689999999988764 3443222 11111
Q ss_pred HH---Hhc-CCHHHHHHHHhhCC---CCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043490 146 NM---YSK-SCADEAWKVFENME---FRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCT 218 (589)
Q Consensus 146 ~~---y~~-g~~~~A~~lf~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 218 (589)
.. +.. ++.++|...|++.. ..+...+..+...+...+ ...|+.++|.+.+++..... +.+...
T Consensus 180 ~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~---------~~~~~~~~a~~~~~~al~~~-~~~~~~ 249 (472)
T 4g1t_A 180 IASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMR---------EEGEEEGEGEKLVEEALEKA-PGVTDV 249 (472)
T ss_dssp HHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC---------------CHHHHHHHHHHHHC-SSCHHH
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHH---------hhhhHHHHHHHHHHHHHHhC-ccHHHH
Confidence 11 222 44444444444332 223344444433331111 23345556666666655432 234455
Q ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-------------------cCCHHHHHHHHhhcC-
Q 043490 219 FSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYAR-------------------CGSISLSKQVFDKMT- 278 (589)
Q Consensus 219 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~~~- 278 (589)
+..+...+...|+++.|...+..+.+.. |.+..++..+...|.. .+..+.|...|++..
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 328 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 5566666666666666666666666554 4445555555544432 123566777777654
Q ss_pred --CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH----HHHHHH-HHhccCcHHHHHHHHHHhHHhcCCccCc
Q 043490 279 --YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDSAT----FVSLLS-ACSHAGLVQEGNKVFHSMLENHGVVPQL 350 (589)
Q Consensus 279 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t----~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 350 (589)
..+..+|..+...|...|++++|++.|++. ...|+... +..+.. ...+.|+.++|...|.+..+ +.|+.
T Consensus 329 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~ 405 (472)
T 4g1t_A 329 ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKS 405 (472)
T ss_dssp HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCC
T ss_pred cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccc
Confidence 345678889999999999999999999998 55555432 222322 23568999999999988764 45654
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 043490 351 DHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQM 422 (589)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 422 (589)
...... ...+.+++++. ...| +..+|..|...|...|++++|++.++++++++|.++.++.-+
T Consensus 406 ~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 406 REKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 332222 23334444433 2234 578899999999999999999999999999998776655443
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=1.6e-16 Score=169.52 Aligned_cols=146 Identities=16% Similarity=0.111 Sum_probs=123.1
Q ss_pred CCCHHHHHHHHHHHhCcCcHHHHHHHHHHHH---HhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHH
Q 043490 213 APDWCTFSIVLKACAGLVTERHASAVHSLIA---KYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT----YHDLVSW 285 (589)
Q Consensus 213 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~---~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~ 285 (589)
.--..||+++|++|++.|++++|.+++..|. +.|+.||+.+||+||++|++.|++++|.++|++|. .||++||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445799999999999999999999998876 45899999999999999999999999999999997 7999999
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccC------cchHHH
Q 043490 286 NSILKAYALHGQ-AKEALQLFSNM---NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQ------LDHYAC 355 (589)
Q Consensus 286 ~~li~~~~~~g~-~~~A~~~~~~m---~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~ 355 (589)
|+||.++++.|+ .++|.++|++| |+.||.+||+.+++++.+.+-++...++. . ++.|+ ..+...
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~----P--~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK----P--TFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGC----C--CCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhC----c--ccCCCCCCcccccchHH
Confidence 999999999998 47899999999 99999999999998776654444443332 2 34443 556667
Q ss_pred HHHHHhhcC
Q 043490 356 MVDLLGRVG 364 (589)
Q Consensus 356 li~~~~~~g 364 (589)
|.+.|.+.+
T Consensus 278 L~dl~s~d~ 286 (1134)
T 3spa_A 278 LRDVYAKDG 286 (1134)
T ss_dssp THHHHCCCS
T ss_pred HHHHHccCC
Confidence 888888766
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=6e-14 Score=134.16 Aligned_cols=241 Identities=10% Similarity=-0.095 Sum_probs=196.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMA---PDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSIS 268 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 268 (589)
...|++++|+..|+++.+.... .+..++..+...+...|+++.|...+..+++.. +.+..++..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 4457889999999999876321 245678888899999999999999999999886 667899999999999999999
Q ss_pred HHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 043490 269 LSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENH 344 (589)
Q Consensus 269 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 344 (589)
+|...|++.. ..+..+|..+...|...|++++|++.|+++ ...|+.......+..+...|++++|...+......
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 9999999887 346789999999999999999999999999 77777666666666667789999999999887654
Q ss_pred CCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhH
Q 043490 345 GVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-----SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLG 418 (589)
Q Consensus 345 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 418 (589)
.|+......++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++.+.+|.+...
T Consensus 174 --~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 --SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp --SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred --CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 233333445788888889999999999887 33332 5788999999999999999999999999999976544
Q ss_pred HHHHHHHhhhcCChHHHHHHH
Q 043490 419 FVQMSNIYCLSGSFNKARLIR 439 (589)
Q Consensus 419 ~~~l~~~~~~~g~~~~a~~~~ 439 (589)
+ ..++...|++++|.+.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 3 56777888998888766
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=5.7e-14 Score=132.77 Aligned_cols=218 Identities=11% Similarity=-0.031 Sum_probs=181.2
Q ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C----C----hhHHH
Q 043490 217 CTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTY--H----D----LVSWN 286 (589)
Q Consensus 217 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~ 286 (589)
..+..+...+...|+++.|...+..+++.. .+..++..+...|...|++++|...|++..+ | + ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456667777778888888888888888877 6778888888888888888888888887762 1 1 57888
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCC
Q 043490 287 SILKAYALHGQAKEALQLFSNM-NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGR 365 (589)
Q Consensus 287 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 365 (589)
.+...|...|++++|++.|++. ...|+.. .+...|++++|.+.++.+... .+.+...+..+...|...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTAD-------ILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchhH-------HHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcC
Confidence 8889999999999999999998 6667743 455568899999999888643 12255678888999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 366 ILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 366 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
+++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|.++.++..++.+|.+.|++++|...+++..
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999988 3334 588899999999999999999999999999999999999999999999999999999999887
Q ss_pred cC
Q 043490 444 GS 445 (589)
Q Consensus 444 ~~ 445 (589)
+.
T Consensus 235 ~~ 236 (258)
T 3uq3_A 235 TK 236 (258)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=4e-14 Score=130.52 Aligned_cols=193 Identities=15% Similarity=0.059 Sum_probs=152.3
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 043490 248 EDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPD-SATFVSLLS 322 (589)
Q Consensus 248 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~ 322 (589)
|++...+..+...+.+.|++++|...|++.. ..+...|..+...+.+.|++++|+..|++. ...|+ ...+..+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 5677778888888889999999999988765 346678888888899999999999999988 66675 457788888
Q ss_pred HHhcc-----------CcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 043490 323 ACSHA-----------GLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPDSVIWSVLL 389 (589)
Q Consensus 323 a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 389 (589)
++... |++++|...++...+. .| +...+..+...|...|++++|+..|++. .+..+...|..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 88888 9999999999988754 45 4567888899999999999999999987 2226789999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 390 GSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 390 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
.++...|++++|+..++++++.+|+++..+..++.+|...|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988654
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.6e-13 Score=129.58 Aligned_cols=232 Identities=11% Similarity=-0.016 Sum_probs=195.1
Q ss_pred hHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCC-
Q 043490 169 ISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGF- 247 (589)
Q Consensus 169 ~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~- 247 (589)
..|..+...+ ...|++++|+..|++..+.. .+...+..+..++...|+++.|...+..+++..-
T Consensus 6 ~~~~~~g~~~-------------~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 70 (258)
T 3uq3_A 6 DKEKAEGNKF-------------YKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE 70 (258)
T ss_dssp HHHHHHHHHH-------------HHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------------HHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 4566667777 89999999999999998877 7888999999999999999999999999887641
Q ss_pred -CCc----HHHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHH
Q 043490 248 -EDD----TVIANALIHAYARCGSISLSKQVFDKMT--YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPD-SATFV 318 (589)
Q Consensus 248 -~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~ 318 (589)
.++ ..++..+...|.+.|++++|...|++.. .++ ...+...|++++|+..++++ ...|+ ...+.
T Consensus 71 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 143 (258)
T 3uq3_A 71 MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEAR 143 (258)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHH
Confidence 112 5888999999999999999999999887 344 24567788999999999999 66664 45788
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC
Q 043490 319 SLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHG 396 (589)
Q Consensus 319 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g 396 (589)
.+...+...|++++|.+.++...+.. +.+...+..+...|.+.|++++|.+.+++. ...|+ ...|..+...+...|
T Consensus 144 ~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 144 LEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 88889999999999999999987642 235678999999999999999999999988 33454 888999999999999
Q ss_pred CHHHHHHHHHHHhhcC------CCChhHHHHHHH
Q 043490 397 ETRLAELAATKLKQLE------PGDSLGFVQMSN 424 (589)
Q Consensus 397 ~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 424 (589)
++++|...++++.++. |.+...+..+..
T Consensus 222 ~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 222 EYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 9999999999999988 766666655544
No 40
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.55 E-value=5.6e-11 Score=131.24 Aligned_cols=311 Identities=14% Similarity=0.129 Sum_probs=164.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCC
Q 043490 8 YATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHG 87 (589)
Q Consensus 8 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 87 (589)
...+...|...|.+++|.++|+... ......+.++ -..|++++|.++.++.. +..+|..+..++.+.|
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~-------~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFD-------VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-------CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCC
Confidence 3445677888999999999998763 2222223333 26788899988888774 4677888889999999
Q ss_pred ChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCC-
Q 043490 88 NAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFENMEF- 165 (589)
Q Consensus 88 ~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~- 165 (589)
++++|++.|.+. .|...|..++..+.+ |++++|.+.|....+
T Consensus 1120 ~~kEAIdsYiKA------------------------------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------------------------------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred CHHHHHHHHHhc------------------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999888543 233334445555555 666666665544321
Q ss_pred -CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Q 043490 166 -RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAK 244 (589)
Q Consensus 166 -~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 244 (589)
++....+.++.+| ++.+++++.. -| .. .|+...|..+...|...|++++|..+|..+
T Consensus 1164 ~~e~~Idt~LafaY-------------AKl~rleele-~f---I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A 1164 ARESYVETELIFAL-------------AKTNRLAELE-EF---IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 1221 (1630)
T ss_pred cccccccHHHHHHH-------------HhhcCHHHHH-HH---Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--
Confidence 2222223355555 4444444321 11 11 233444445555555555555555555543
Q ss_pred hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043490 245 YGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNMNVQPDSATFVSLLSAC 324 (589)
Q Consensus 245 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~ 324 (589)
..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|...|++..|...... +..+...+..++..|
T Consensus 1222 -------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~--Iiv~~deLeeli~yY 1290 (1630)
T 1xi4_A 1222 -------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH--IVVHADELEELINYY 1290 (1630)
T ss_pred -------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHh--hhcCHHHHHHHHHHH
Confidence 24555555555555555555555554 3345555555555555555555544432 222333344455555
Q ss_pred hccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhh--cCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHH
Q 043490 325 SHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGR--VGRILEAEKLIREM-PMEP------DSVIWSVLLGSCRK 394 (589)
Q Consensus 325 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~--~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~ 394 (589)
...|.+++|..+++... ++.| ....|+-|..+|++ -+++.++.++|..- .+.| +...|..+...|.+
T Consensus 1291 e~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~ 1367 (1630)
T 1xi4_A 1291 QDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 1367 (1630)
T ss_pred HHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHh
Confidence 55555555555554332 2222 22233333333333 23444444444332 2222 24445555555555
Q ss_pred cCCHHHHH
Q 043490 395 HGETRLAE 402 (589)
Q Consensus 395 ~g~~~~a~ 402 (589)
.|+++.|.
T Consensus 1368 ~~e~dnA~ 1375 (1630)
T 1xi4_A 1368 YEEYDNAI 1375 (1630)
T ss_pred cccHHHHH
Confidence 55555554
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=6e-13 Score=127.02 Aligned_cols=234 Identities=13% Similarity=0.002 Sum_probs=183.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHHHhcCCHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDD--TVIANALIHAYARCGSISL 269 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~ 269 (589)
...|++++|+..|++..+.. +.+...+..+...+...|+++.|...+..+++.+-.++ ...+..+...|.+.|++++
T Consensus 14 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~ 92 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSL 92 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHH
Confidence 88999999999999998853 22444778888899999999999999999998432222 3348899999999999999
Q ss_pred HHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 043490 270 SKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDS-ATFVSLLSACSHAGLVQEGNKVFHSMLENH 344 (589)
Q Consensus 270 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 344 (589)
|.+.|++.. ..+..+|..+...|...|++++|++.|++. ...|+. ..+..+...+...+++++|.+.|+.+.+.
T Consensus 93 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~- 171 (272)
T 3u4t_A 93 AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL- 171 (272)
T ss_dssp HHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999999876 446689999999999999999999999999 777754 56666662555566999999999998764
Q ss_pred CCccC-cchHHHHHHHHhhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 043490 345 GVVPQ-LDHYACMVDLLGRVGR---ILEAEKLIREM----PMEPD------SVIWSVLLGSCRKHGETRLAELAATKLKQ 410 (589)
Q Consensus 345 ~~~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~m----~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 410 (589)
.|+ ...+..+...+...|+ +++|...+++. ...|+ ..+|..+...|...|++++|...++++.+
T Consensus 172 --~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 172 --KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp --STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 443 5677778888888887 77777777766 11233 35788888999999999999999999999
Q ss_pred cCCCChhHHHHHHHHhhhc
Q 043490 411 LEPGDSLGFVQMSNIYCLS 429 (589)
Q Consensus 411 ~~p~~~~~~~~l~~~~~~~ 429 (589)
++|+++.+...+.......
T Consensus 250 ~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 250 LDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HCTTCHHHHHHHC------
T ss_pred cCccHHHHHHHhhhhhccc
Confidence 9999988777766555443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=1.2e-12 Score=134.74 Aligned_cols=371 Identities=8% Similarity=-0.019 Sum_probs=173.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCCh---HHHHHHHhcCCCCCcchHHHHHHHHHhCC
Q 043490 11 LFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYL---DDARHLFDEMPKRNVVSWTALISGYAQHG 87 (589)
Q Consensus 11 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g 87 (589)
+...+.+.|++++|.++|....+. .++..+..|..+|...|+. ++|...|++..+.++..+..|...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~-----g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL-----GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----TCCTGGGTCC----------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 566677889999999999999876 3444556677788888888 99999999888777788888888666665
Q ss_pred -----ChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHH---HHHH
Q 043490 88 -----NAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCAD---EAWK 158 (589)
Q Consensus 88 -----~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~---~A~~ 158 (589)
++++|+..|++..+...|+ .+..|..+|.. +..+ ++..
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~~---------------------------------A~~~Lg~~y~~~~~~~~~~~a~~ 130 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEGN---------------------------------TLIPLAMLYLQYPHSFPNVNAQQ 130 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSS---------------------------------CHHHHHHHHHHCGGGCTTCCHHH
T ss_pred CCCCcCHHHHHHHHHHHHHCCCHH---------------------------------HHHHHHHHHHhCCCCCCCHHHHH
Confidence 7789999998887652222 22222222322 2111 1111
Q ss_pred HHhhCC-CCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHH----HHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcC---
Q 043490 159 VFENME-FRNVISWNSMIAAFRACKLEAQAIELFAKMKNEE----EALFLFRQLQREGMAPDWCTFSIVLKACAGLV--- 230 (589)
Q Consensus 159 lf~~m~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~----~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~--- 230 (589)
.+.... ..+...+..+...| ...+.++ ++..+++.... + .|+ .+..+...+...|
T Consensus 131 ~~~~a~~~g~~~a~~~Lg~~y-------------~~~~~~~~~~~~a~~~~~~a~~-~-~~~--a~~~Lg~~~~~~g~~~ 193 (452)
T 3e4b_A 131 QISQWQAAGYPEAGLAQVLLY-------------RTQGTYDQHLDDVERICKAALN-T-TDI--CYVELATVYQKKQQPE 193 (452)
T ss_dssp HHHHHHHHTCTTHHHHHHHHH-------------HHHTCGGGGHHHHHHHHHHHTT-T-CTT--HHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH-------------HcCCCcccCHHHHHHHHHHHHc-C-CHH--HHHHHHHHHHHcCCcc
Confidence 111111 11233344444444 3333222 22222222211 1 122 3444444444445
Q ss_pred cHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc----CCHHHHHHHHhhcCCCChhHHHHHHHH-H--HHcCCHHHHHH
Q 043490 231 TERHASAVHSLIAKYGFEDDTVIANALIHAYARC----GSISLSKQVFDKMTYHDLVSWNSILKA-Y--ALHGQAKEALQ 303 (589)
Q Consensus 231 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~ 303 (589)
+.++|...+....+.| +++...+..|..+|... +++++|.+.|++....+..++..+... | ...++.++|++
T Consensus 194 ~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~ 272 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMK 272 (452)
T ss_dssp HHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHH
T ss_pred cHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 5555555555555555 33444444455555433 455555555555542244455555444 2 23555666666
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhh----cCCHHHHHHHH
Q 043490 304 LFSNM-NVQPDSATFVSLLSACSHAG-----LVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGR----VGRILEAEKLI 373 (589)
Q Consensus 304 ~~~~m-~~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~ 373 (589)
.|++. .. -+...+..|...|. .| ++++|.+.|+... .-+...+..|..+|.. ..++++|...|
T Consensus 273 ~~~~Aa~~-g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 345 (452)
T 3e4b_A 273 YLDNGRAA-DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHL 345 (452)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 66555 11 13444444444444 33 5666666665442 2233444455555544 23666666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 374 REMPMEPDSVIWSVLLGSCRK----HGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 374 ~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
++.--.-+......|...|.. .++.++|...+++..+.++++.......+......++..+|.++.++.++
T Consensus 346 ~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 346 LTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 665111223333444444442 34677777777777776653333333333333344556667666665543
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=4.5e-12 Score=119.39 Aligned_cols=198 Identities=14% Similarity=0.036 Sum_probs=111.4
Q ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHH
Q 043490 217 CTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYA 293 (589)
Q Consensus 217 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 293 (589)
..+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++. ..+...|..+...|.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 344555555566666666666666666554 4455566666666666666666666666554 234455666666666
Q ss_pred HcCCHHHHHHHHHhC-C--CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHH
Q 043490 294 LHGQAKEALQLFSNM-N--VQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEA 369 (589)
Q Consensus 294 ~~g~~~~A~~~~~~m-~--~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 369 (589)
..|++++|++.|+++ . ..|+ ...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666 3 4443 3345555555666666666666666554331 11344455555555556666666
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChh
Q 043490 370 EKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSL 417 (589)
Q Consensus 370 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 417 (589)
...++++ ...| +...+..+...+...|+.++|...++++.+..|.++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 6555554 2222 3445555555555556666666666666555554443
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=2.1e-12 Score=119.10 Aligned_cols=194 Identities=12% Similarity=0.052 Sum_probs=121.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 043490 250 DTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSAC 324 (589)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~ 324 (589)
+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++ ...| +..++..+...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34455555566666666666666665544 234455666666666666666666666666 3333 345566666666
Q ss_pred hcc-CcHHHHHHHHHHhHHhcCCccC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 043490 325 SHA-GLVQEGNKVFHSMLENHGVVPQ-LDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRL 400 (589)
Q Consensus 325 ~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 400 (589)
... |++++|.+.++.+.+ .+..|+ ...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 666 677777776666654 122222 345666666666777777777776665 2233 36666777777777777777
Q ss_pred HHHHHHHHhhcCC-CChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 401 AELAATKLKQLEP-GDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 401 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
|...++++.+..| .+...+..+...+...|+.+++..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777777777777 6777777777777777777777777776654
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=2.2e-12 Score=129.00 Aligned_cols=242 Identities=10% Similarity=0.036 Sum_probs=200.1
Q ss_pred hhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHhC
Q 043490 168 VISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVT-ERHASAVHSLIAKYG 246 (589)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~a~~i~~~~~~~g 246 (589)
...|+.+...+ .+.|++++|++.|++.+... +-+...|..+..++...|+ +++|...++.+++..
T Consensus 97 ~~a~~~lg~~~-------------~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 97 RDVYDYFRAVL-------------QRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162 (382)
T ss_dssp HHHHHHHHHHH-------------HHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-------------HHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC
Confidence 45677777777 89999999999999998853 2356788888888999996 999999999999987
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 043490 247 FEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPD-SATFVSLL 321 (589)
Q Consensus 247 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll 321 (589)
+.+..+|+.+..+|.+.|++++|...|+++. ..+..+|..+..++...|++++|+..|+++ .+.|+ ...|+.+.
T Consensus 163 -P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg 241 (382)
T 2h6f_A 163 -PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRY 241 (382)
T ss_dssp -TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 6688999999999999999999999999887 457789999999999999999999999999 77774 56888888
Q ss_pred HHHhc-cCcHHHH-----HHHHHHhHHhcCCcc-CcchHHHHHHHHhhcC--CHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 043490 322 SACSH-AGLVQEG-----NKVFHSMLENHGVVP-QLDHYACMVDLLGRVG--RILEAEKLIREMPMEPD-SVIWSVLLGS 391 (589)
Q Consensus 322 ~a~~~-~g~~~~a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p~-~~~~~~ll~~ 391 (589)
.++.. .|..++| .+.++..++. .| +...|..+..+|.+.| ++++|++.+.++...|+ ...+..+...
T Consensus 242 ~~l~~l~~~~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~ 318 (382)
T 2h6f_A 242 FVISNTTGYNDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDI 318 (382)
T ss_dssp HHHHHTTCSCSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 88888 5665777 4778777643 55 4567888888888888 68999999888755565 7788888888
Q ss_pred HHHcC--------C-HHHHHHHHHHH-hhcCCCChhHHHHHHHHhh
Q 043490 392 CRKHG--------E-TRLAELAATKL-KQLEPGDSLGFVQMSNIYC 427 (589)
Q Consensus 392 ~~~~g--------~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~ 427 (589)
|.+.| + .++|+.+++++ .+++|.....|..+...+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 319 YEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 88864 2 58999999999 8999988888877766554
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=8e-13 Score=123.68 Aligned_cols=206 Identities=11% Similarity=0.038 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHH
Q 043490 215 DWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKA 291 (589)
Q Consensus 215 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 291 (589)
...+|..+...+...|+++.|...+..+++.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 33455555556666677777777776666643 4456666666666666777777766666654 2345566666666
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHH
Q 043490 292 YALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEA 369 (589)
Q Consensus 292 ~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 369 (589)
|...|++++|++.|+++ ...| +...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666666 3333 34455556666666666666666666654431 12344555555666666666666
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 043490 370 EKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMS 423 (589)
Q Consensus 370 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 423 (589)
.+.++++ ...| +..+|..+...+...|++++|...++++.+..|+++.++..+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 6666555 2222 3555556666666666666666666666666665555544443
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=2e-12 Score=121.92 Aligned_cols=195 Identities=8% Similarity=-0.028 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHh
Q 043490 251 TVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACS 325 (589)
Q Consensus 251 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~ 325 (589)
...+..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++ ...| +...+..+...+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 5678888999999999999999999876 446788999999999999999999999999 5555 5678888999999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 043490 326 HAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAE 402 (589)
Q Consensus 326 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 402 (589)
..|++++|.++++.+.+ .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998865 23445 4567888899999999999999999987 3344 4888999999999999999999
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 403 LAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
..++++.+..|.+...+..++.+|.+.|++++|.+.++++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999987654
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.46 E-value=9.7e-13 Score=121.18 Aligned_cols=193 Identities=14% Similarity=0.053 Sum_probs=132.3
Q ss_pred CCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHH
Q 043490 213 APDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSIL 289 (589)
Q Consensus 213 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 289 (589)
+++...+..+...+.+.|++++|...++.+++.. |.+...+..+...|.+.|++++|...|++.. ..+...|..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3455566667777777788888888887777765 5667777777788888888888888887765 33556777777
Q ss_pred HHHHHc-----------CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHH
Q 043490 290 KAYALH-----------GQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACM 356 (589)
Q Consensus 290 ~~~~~~-----------g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 356 (589)
..|... |++++|+..|++. ...|+ ...+..+..++...|++++|...|+..++. . .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHH
Confidence 777777 8888888888888 66664 456777777888888888888888887665 3 566677788
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 043490 357 VDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLK 409 (589)
Q Consensus 357 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 409 (589)
..+|...|++++|...|++. ...| +...+..+...+...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888888877 3345 37777788888888888888888777653
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=1.3e-11 Score=113.71 Aligned_cols=205 Identities=9% Similarity=-0.049 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHH
Q 043490 215 DWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKA 291 (589)
Q Consensus 215 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 291 (589)
+...+..+...+...|+++.|.+.+..+.+.. +.+..++..+...|...|++++|.+.|+++. ..+..+|..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 45567777888888999999999999888875 5667888889999999999999999998876 3467788889999
Q ss_pred HHHc-CCHHHHHHHHHhC-C--CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCH
Q 043490 292 YALH-GQAKEALQLFSNM-N--VQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRI 366 (589)
Q Consensus 292 ~~~~-g~~~~A~~~~~~m-~--~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 366 (589)
|... |++++|+..|+++ . ..|+ ...+..+..++...|++++|.+.++.+.+.. +.+...+..+...|.+.|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCH
Confidence 9999 9999999999998 5 4554 4678888889999999999999999887542 22467788899999999999
Q ss_pred HHHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 043490 367 LEAEKLIREM-PMEP--DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQM 422 (589)
Q Consensus 367 ~~A~~~~~~m-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 422 (589)
++|.+.++++ ...| +...+..+...+...|+.+.+..+++.+.+..|+++.....+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999999987 3333 577788888888999999999999999999999887665443
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.44 E-value=1.2e-11 Score=117.96 Aligned_cols=236 Identities=11% Similarity=0.056 Sum_probs=186.5
Q ss_pred HHHHHHHHhc-CCHHHHHHHHhhCCC---CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-
Q 043490 141 ANALINMYSK-SCADEAWKVFENMEF---RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPD- 215 (589)
Q Consensus 141 ~~~li~~y~~-g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~- 215 (589)
.......+.+ |++++|...|++..+ .+...|..+...| ...|++++|+..|++....+..|+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~-------------~~~~~~~~A~~~~~~a~~~~~~~~~ 72 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCY-------------YELAKYDLAQKDIETYFSKVNATKA 72 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHH-------------HHTTCHHHHHHHHHHHHTTSCTTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-------------HHHhhHHHHHHHHHHHHhccCchhH
Confidence 3445566778 999999999998753 3456888888888 999999999999999988432222
Q ss_pred -HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHH
Q 043490 216 -WCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTY---HDLVSWNSILKA 291 (589)
Q Consensus 216 -~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 291 (589)
...|..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|++..+ .+...|..+...
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 151 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQA 151 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Confidence 3458888899999999999999999999886 56778999999999999999999999999873 356678777734
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCc---HHHHHHHHHHhHHhcCCccCc------chHHHHHHHH
Q 043490 292 YALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGL---VQEGNKVFHSMLENHGVVPQL------DHYACMVDLL 360 (589)
Q Consensus 292 ~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~~------~~~~~li~~~ 360 (589)
+...+++++|++.|++. ...|+ ...+..+..++...|+ +++|...++...+...-.|+. ..|..+...|
T Consensus 152 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 152 YYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 44456999999999999 66665 5677777888887787 888888888887654334542 5788889999
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 043490 361 GRVGRILEAEKLIREM-PMEPD-SVIWSVLLG 390 (589)
Q Consensus 361 ~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~ 390 (589)
.+.|++++|.+.+++. .+.|+ ...+..+-.
T Consensus 232 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILALDPTNKKAIDGLKM 263 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHhcCccHHHHHHHhhh
Confidence 9999999999999988 44564 555544433
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=1.7e-12 Score=121.41 Aligned_cols=196 Identities=11% Similarity=0.126 Sum_probs=154.6
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 043490 249 DDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSA 323 (589)
Q Consensus 249 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a 323 (589)
.....+..+...+...|++++|...|+++. ..+...|..+...|...|++++|++.|+++ ...| +..++..+...
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 455677788889999999999999999886 346788999999999999999999999999 5555 56788889999
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 043490 324 CSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLA 401 (589)
Q Consensus 324 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 401 (589)
+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999987642 335668888999999999999999999988 3334 588899999999999999999
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 402 ELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
...++++.+..|.+..++..++.+|.+.|++++|...+++..+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999987643
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=1.4e-12 Score=132.65 Aligned_cols=252 Identities=10% Similarity=0.020 Sum_probs=200.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhCcCcHHHHHHHHHHHHHh----C-CCCcHHHHHHHHHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDW----CTFSIVLKACAGLVTERHASAVHSLIAKY----G-FEDDTVIANALIHAYA 262 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g-~~~~~~~~~~li~~~~ 262 (589)
...|++++|+..|++..+.+. .+. ..+..+...+...|+++.|...+..+++. + .+....++..+...|.
T Consensus 59 ~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 137 (411)
T 4a1s_A 59 CNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK 137 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 889999999999999988632 233 46778888889999999999999988764 1 1334567888999999
Q ss_pred hcCCHHHHHHHHhhcCC---------CChhHHHHHHHHHHHcCC-----------------HHHHHHHHHhC-------C
Q 043490 263 RCGSISLSKQVFDKMTY---------HDLVSWNSILKAYALHGQ-----------------AKEALQLFSNM-------N 309 (589)
Q Consensus 263 ~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m-------~ 309 (589)
..|++++|...|++... ....+|..+...|...|+ +++|++.+++. +
T Consensus 138 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~ 217 (411)
T 4a1s_A 138 VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG 217 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999988752 123578889999999999 99999999887 2
Q ss_pred CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccC----cchHHHHHHHHhhcCCHHHHHHHHHhC-CC---CC
Q 043490 310 VQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQ----LDHYACMVDLLGRVGRILEAEKLIREM-PM---EP 380 (589)
Q Consensus 310 ~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p 380 (589)
..| ...++..+...+...|++++|.+.++...+...-.++ ...+..+...|...|++++|.+.+++. .. ..
T Consensus 218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 218 DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 122 2347778888999999999999999887653211112 227888999999999999999999877 11 11
Q ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC------ChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 381 D----SVIWSVLLGSCRKHGETRLAELAATKLKQLEPG------DSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 381 ~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
+ ..++..+...+...|++++|...++++.+..+. ...++..++.+|.+.|++++|...+++..+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 567888999999999999999999999876432 245788999999999999999999998765
No 53
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=4.4e-12 Score=124.48 Aligned_cols=253 Identities=13% Similarity=0.056 Sum_probs=199.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhCcCcHHHHHHHHHHHHHh----CC-CCcHHHHHHHHHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPD----WCTFSIVLKACAGLVTERHASAVHSLIAKY----GF-EDDTVIANALIHAYA 262 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~-~~~~~~~~~li~~~~ 262 (589)
...|++++|+..|++..+... .+ ...+..+...+...|+++.|.+.+..+.+. +. +....++..+...|.
T Consensus 16 ~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 94 (338)
T 3ro2_A 16 CKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 94 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 889999999999999988632 23 356778888899999999999999887654 21 223567888999999
Q ss_pred hcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCC--------------------HHHHHHHHHhC-----
Q 043490 263 RCGSISLSKQVFDKMTY-----HD----LVSWNSILKAYALHGQ--------------------AKEALQLFSNM----- 308 (589)
Q Consensus 263 ~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m----- 308 (589)
..|++++|...|++..+ ++ ..++..+...|...|+ +++|++.+++.
T Consensus 95 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~ 174 (338)
T 3ro2_A 95 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT 174 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988651 22 3478888999999999 99999999887
Q ss_pred --CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccC----cchHHHHHHHHhhcCCHHHHHHHHHhC----C
Q 043490 309 --NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQ----LDHYACMVDLLGRVGRILEAEKLIREM----P 377 (589)
Q Consensus 309 --~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~ 377 (589)
+..|. ..++..+...+...|++++|.+.++...+...-.++ ...+..+...|...|++++|.+.+++. +
T Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 254 (338)
T 3ro2_A 175 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 254 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 21222 346778888899999999999999887643211122 237888889999999999999999876 1
Q ss_pred CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC------ChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 378 MEPD----SVIWSVLLGSCRKHGETRLAELAATKLKQLEPG------DSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 378 ~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
-.++ ..++..+...+...|++++|...++++.+..+. ...++..++.+|.+.|++++|...+++..+.
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 255 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1122 567788889999999999999999998876432 1447889999999999999999999988753
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=5.6e-12 Score=127.66 Aligned_cols=252 Identities=12% Similarity=0.053 Sum_probs=199.7
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhCcCcHHHHHHHHHHHHHh----CCC-CcHHHHHHHHHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPD----WCTFSIVLKACAGLVTERHASAVHSLIAKY----GFE-DDTVIANALIHAYA 262 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~-~~~~~~~~li~~~~ 262 (589)
...|++++|+..|++....+. .+ ...+..+...+...|+++.|...+..+.+. +-+ ....++..+...|.
T Consensus 20 ~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 98 (406)
T 3sf4_A 20 CKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 98 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 889999999999999988632 23 356778888889999999999999887654 212 23567888999999
Q ss_pred hcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCC--------------------HHHHHHHHHhC-----
Q 043490 263 RCGSISLSKQVFDKMTY-----HD----LVSWNSILKAYALHGQ--------------------AKEALQLFSNM----- 308 (589)
Q Consensus 263 ~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m----- 308 (589)
..|++++|...|++..+ ++ ..++..+...|...|+ +++|++.+++.
T Consensus 99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 178 (406)
T 3sf4_A 99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT 178 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988762 22 3478889999999999 99999999887
Q ss_pred --CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccC----cchHHHHHHHHhhcCCHHHHHHHHHhC----C
Q 043490 309 --NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQ----LDHYACMVDLLGRVGRILEAEKLIREM----P 377 (589)
Q Consensus 309 --~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~ 377 (589)
+..|. ..++..+...+...|++++|.+.++...+...-.++ ...+..+...|...|++++|...+++. +
T Consensus 179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 258 (406)
T 3sf4_A 179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 258 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 11222 346778888999999999999999887653221222 237888899999999999999999876 1
Q ss_pred CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC------hhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 378 MEPD----SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGD------SLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 378 ~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
-.++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|...+++..+
T Consensus 259 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 259 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 5678888999999999999999999998764322 56788999999999999999999998764
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=1.5e-12 Score=134.94 Aligned_cols=207 Identities=7% Similarity=-0.034 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 043490 232 ERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSI-SLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSN 307 (589)
Q Consensus 232 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 307 (589)
++.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555555544433 45677788888888888888 88888888765 34567888899999999999999999999
Q ss_pred C-CCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhc--------CCHHH
Q 043490 308 M-NVQPDSATFVSLLSACSHA---------GLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRV--------GRILE 368 (589)
Q Consensus 308 m-~~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--------g~~~~ 368 (589)
. .+.|+...+..+..++... |++++|.+.|++..+. .| +...|..+..+|... |++++
T Consensus 163 al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 9 8889988888888899998 9999999999988754 34 566888889999888 99999
Q ss_pred HHHHHHhC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHH
Q 043490 369 AEKLIREM-PMEP----DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEM 442 (589)
Q Consensus 369 A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 442 (589)
|++.|++. ...| +...|..+..+|...|++++|...++++.+++|.+..++..+..++...|++++|.+.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999988 4456 68999999999999999999999999999999999999999999999999999999866543
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.43 E-value=2.3e-12 Score=128.87 Aligned_cols=224 Identities=10% Similarity=0.042 Sum_probs=193.4
Q ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHhhcC---CCChhHHHHHHHHH
Q 043490 217 CTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGS-ISLSKQVFDKMT---YHDLVSWNSILKAY 292 (589)
Q Consensus 217 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~ 292 (589)
..|..+...+...|++++|...++.+++.. +.+..+|+.+...|.+.|+ +++|+..|+++. ..+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456677777888999999999999999986 6788999999999999997 999999999987 45778999999999
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhh-cCCHHH
Q 043490 293 ALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGR-VGRILE 368 (589)
Q Consensus 293 ~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-~g~~~~ 368 (589)
...|++++|+..|+++ .+.| +...|..+..++...|++++|...|+.+++. .| +...|+.+..+|.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999 7777 5678999999999999999999999999864 45 56788999999999 666577
Q ss_pred H-----HHHHHhC-CCCCC-HHHHHHHHHHHHHcC--CHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcC---------
Q 043490 369 A-----EKLIREM-PMEPD-SVIWSVLLGSCRKHG--ETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSG--------- 430 (589)
Q Consensus 369 A-----~~~~~~m-~~~p~-~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 430 (589)
| ++.|++. .+.|+ ...|..+...+...| ++++|...++++ +.+|+++.++..|+.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4777766 45665 889999999998888 689999999998 889999999999999999875
Q ss_pred ChHHHHHHHHHH-hcC
Q 043490 431 SFNKARLIRKEM-KGS 445 (589)
Q Consensus 431 ~~~~a~~~~~~m-~~~ 445 (589)
..++|.++++++ .+.
T Consensus 333 ~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 333 ILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 358999999998 554
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.43 E-value=3e-12 Score=122.17 Aligned_cols=237 Identities=7% Similarity=-0.143 Sum_probs=184.3
Q ss_pred Hhc-CCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043490 148 YSK-SCADEAWKVFENMEFR-------NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTF 219 (589)
Q Consensus 148 y~~-g~~~~A~~lf~~m~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 219 (589)
+.. |++++|...|+++.+. +..+|..+...| ...|++++|+..|++..... +.+..++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~A~~~~~~al~~~-~~~~~~~ 80 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLY-------------DSLGLRALARNDFSQALAIR-PDMPEVF 80 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHH-------------HHTTCHHHHHHHHHHHHHHC-CCCHHHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHH-------------HHcccHHHHHHHHHHHHHcC-CCcHHHH
Confidence 344 7889999999887642 356788888888 89999999999999998864 3467889
Q ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCC
Q 043490 220 SIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT--YHDLVSWNSILKAYALHGQ 297 (589)
Q Consensus 220 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~ 297 (589)
..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|+++. .|+.......+..+...|+
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 159 (275)
T 1xnf_A 81 NYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD 159 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Confidence 999999999999999999999999875 5678899999999999999999999999987 4544444455555677799
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccC-----cchHHHHHHHHhhcCCHHHHH
Q 043490 298 AKEALQLFSNM--NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQ-----LDHYACMVDLLGRVGRILEAE 370 (589)
Q Consensus 298 ~~~A~~~~~~m--~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~ 370 (589)
+++|+..+++. ..+++...+ .++..+...++.++|.+.+....+ ..|+ ...+..+...|.+.|++++|.
T Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 235 (275)
T 1xnf_A 160 EKQAKEVLKQHFEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSAT 235 (275)
T ss_dssp HHHHHHHHHHHHHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHH
Confidence 99999999888 333444444 467777888888999999887642 2332 568889999999999999999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043490 371 KLIREM-PMEPDSVIWSVLLGSCRKHGETRLAELAA 405 (589)
Q Consensus 371 ~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 405 (589)
..|++. ...|+. +.....++...|++++|+..+
T Consensus 236 ~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 236 ALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 999988 556642 223345667778888877665
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.41 E-value=5.9e-11 Score=113.35 Aligned_cols=223 Identities=11% Similarity=-0.051 Sum_probs=163.9
Q ss_pred CHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHhhcC-CCChhHHHHHH
Q 043490 215 DWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYAR----CGSISLSKQVFDKMT-YHDLVSWNSIL 289 (589)
Q Consensus 215 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li 289 (589)
+..++..+...+...|++++|...+....+. .+...+..+...|.. .|++++|...|++.. ..+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3445556666666777777777777777763 345566677777777 777888877777765 33566777777
Q ss_pred HHHHH----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHH
Q 043490 290 KAYAL----HGQAKEALQLFSNM-NVQPDSATFVSLLSACSH----AGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLL 360 (589)
Q Consensus 290 ~~~~~----~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 360 (589)
..|.. .+++++|++.|++. .. .+..++..+...+.. .+++++|.+.|+...+. + +...+..+...|
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL-KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc-CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHH
Confidence 77777 78888888888777 32 256677777777777 78888888888877553 2 455666777777
Q ss_pred hh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhh----
Q 043490 361 GR----VGRILEAEKLIREMPMEPDSVIWSVLLGSCRK----HGETRLAELAATKLKQLEPGDSLGFVQMSNIYCL---- 428 (589)
Q Consensus 361 ~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 428 (589)
.. .+++++|.+.|++.--..+...+..+...+.. .+++++|...+++..+.+| +..+..|..+|.+
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCc
Confidence 77 78888888888876112356777778888888 8889999998888888765 5678888888888
Q ss_pred cCChHHHHHHHHHHhcCCC
Q 043490 429 SGSFNKARLIRKEMKGSRV 447 (589)
Q Consensus 429 ~g~~~~a~~~~~~m~~~~~ 447 (589)
.|++++|.+.+++..+.|.
T Consensus 235 ~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 235 TRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SCCSTTHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHHcCC
Confidence 8889999998888776653
No 59
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.41 E-value=6.6e-11 Score=112.99 Aligned_cols=224 Identities=11% Similarity=-0.042 Sum_probs=190.0
Q ss_pred ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhC----cCcHHHHHHHHHHH
Q 043490 167 NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAG----LVTERHASAVHSLI 242 (589)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~ 242 (589)
+..++..+...| ...|++++|+..|++..+. -+...+..+...+.. .+++++|...+...
T Consensus 5 ~~~a~~~lg~~~-------------~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 68 (273)
T 1ouv_A 5 DPKELVGLGAKS-------------YKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA 68 (273)
T ss_dssp CHHHHHHHHHHH-------------HHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH-------------HhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH
Confidence 455666777777 8889999999999998883 355677778888888 99999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHhhcC-CCChhHHHHHHHHHHH----cCCHHHHHHHHHhC-CCCC
Q 043490 243 AKYGFEDDTVIANALIHAYAR----CGSISLSKQVFDKMT-YHDLVSWNSILKAYAL----HGQAKEALQLFSNM-NVQP 312 (589)
Q Consensus 243 ~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p 312 (589)
.+.+ +...+..+..+|.. .+++++|...|++.. ..+..++..+...|.. .+++++|++.|++. ...
T Consensus 69 ~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~- 144 (273)
T 1ouv_A 69 CDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN- 144 (273)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-
T ss_pred HHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-
Confidence 9886 77888999999999 999999999999876 3477889999999999 99999999999999 333
Q ss_pred CHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCCHH
Q 043490 313 DSATFVSLLSACSH----AGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGR----VGRILEAEKLIREM-PMEPDSV 383 (589)
Q Consensus 313 ~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~ 383 (589)
+...+..+...+.. .+++++|.+.|+...+. .+...+..+..+|.. .+++++|++.|++. ... +..
T Consensus 145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~ 219 (273)
T 1ouv_A 145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGG 219 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHH
T ss_pred cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHH
Confidence 56677778888887 89999999999988653 245678888999999 99999999999987 323 377
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCC
Q 043490 384 IWSVLLGSCRK----HGETRLAELAATKLKQLEPGD 415 (589)
Q Consensus 384 ~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~ 415 (589)
.+..+...|.. .+++++|...++++.+.+|++
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 88888889998 999999999999999998854
No 60
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=2.6e-09 Score=113.98 Aligned_cols=403 Identities=10% Similarity=0.054 Sum_probs=257.8
Q ss_pred CChhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCC---hHHHHHHHhcCCC-----CCcc
Q 043490 3 HSTQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGY---LDDARHLFDEMPK-----RNVV 74 (589)
Q Consensus 3 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~m~~-----~~~~ 74 (589)
-|..+|..+++.+.+.+.++.++.+|+.++..+| .+...|...+..-.+.|. .+.+..+|++... |++.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP---~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP---LMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 4677888899999888999999999999998888 888889988988888888 9999999997542 6777
Q ss_pred hHHHHHHHHHhCCCh--------hHHHHHHHHHHhc--c-CCCce-eHHHHHHHhc-------------hhhHHHHHHHH
Q 043490 75 SWTALISGYAQHGNA--------EECFRLFCSLLQY--F-FPNEF-SLASVLISCD-------------YLHGKLVHALA 129 (589)
Q Consensus 75 ~~~~li~~~~~~g~~--------~~A~~~~~~m~~~--~-~p~~~-t~~~~l~a~~-------------~~~~~~~~~~~ 129 (589)
.|...+.-..+.++. +...++|+..+.. . .|+.. .|...+.-.. .+.++.++..+
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 888877766555543 2344677776655 2 34432 3333332110 34455666666
Q ss_pred HHhcCCCchhHHHHHHHHHhc--------------CCHHHHHHHHhhC-----------CC----------C--C-----
Q 043490 130 LKFSLDAHVYVANALINMYSK--------------SCADEAWKVFENM-----------EF----------R--N----- 167 (589)
Q Consensus 130 ~~~g~~~~~~~~~~li~~y~~--------------g~~~~A~~lf~~m-----------~~----------~--~----- 167 (589)
+......-..+|......-.. ..++.|+..+.++ +. | +
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 532211112233222111100 1223344444331 00 0 0
Q ss_pred -hhHHHHHHHHHHcCCcHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHH-HH
Q 043490 168 -VISWNSMIAAFRACKLEAQAIELFAKMK-------NEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHAS-AV 238 (589)
Q Consensus 168 -~~~~~~li~~~~~~g~~~~a~~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~i 238 (589)
...|...+.-- ..++ ..+++..+|++.... ++-+...|.....-+...|+.+.|. .+
T Consensus 301 ql~lW~~yi~fE-------------k~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 301 QLLIWLEWIRWE-------------SDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp HHHHHHHHHHHH-------------HTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred HHHHHHHHHHHH-------------HhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 12233333221 2221 123455677777664 3345666666666667778888886 99
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-------------CC------------hhHHHHHHHHHH
Q 043490 239 HSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTY-------------HD------------LVSWNSILKAYA 293 (589)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~ 293 (589)
++..+.. .|.+...+-.++...-+.|+++.|.++|+++.. |+ ...|...+....
T Consensus 367 l~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 367 LKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 9998875 366777788888888899999999999988753 21 235777777777
Q ss_pred HcCCHHHHHHHHHhC-CC--CCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHH
Q 043490 294 LHGQAKEALQLFSNM-NV--QPDSATFVSLLSACSH-AGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEA 369 (589)
Q Consensus 294 ~~g~~~~A~~~~~~m-~~--~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 369 (589)
+.|..+.|..+|.+. .. .+....|......-.+ .++.+.|.++|+..++.++ -+...+...++.....|+.+.|
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHH
Confidence 888889999999888 33 2233344332222223 3458899999988877642 2444566777877888999999
Q ss_pred HHHHHhC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHh
Q 043490 370 EKLIREM-PMEP----DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIY 426 (589)
Q Consensus 370 ~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 426 (589)
..+|++. ...| ....|...+.--.++|+.+.+..+.+++.+..|++. ....+++=|
T Consensus 524 R~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 524 KSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 9999887 3233 256788888888889999999999999999888653 333334433
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=1.3e-11 Score=110.20 Aligned_cols=164 Identities=13% Similarity=0.099 Sum_probs=115.2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHH
Q 043490 281 DLVSWNSILKAYALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVD 358 (589)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 358 (589)
+...|..+...|.+.|++++|++.|++. .+.|+ ..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHHH
Confidence 3445666666666666666666666666 55553 3456666666666777777777766664431 123345555666
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHH
Q 043490 359 LLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKAR 436 (589)
Q Consensus 359 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 436 (589)
.+...+++++|.+.+.+. ...| +...|..+...+...|++++|+..++++++.+|.++.+|..++.+|.+.|++++|.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 667777777777777666 3334 47778888888888888889998888888888888888888899999999999999
Q ss_pred HHHHHHhcCC
Q 043490 437 LIRKEMKGSR 446 (589)
Q Consensus 437 ~~~~~m~~~~ 446 (589)
+.|++..+.+
T Consensus 162 ~~~~~al~~~ 171 (184)
T 3vtx_A 162 KYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhCC
Confidence 8888876543
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.37 E-value=1.1e-11 Score=125.44 Aligned_cols=285 Identities=11% Similarity=0.004 Sum_probs=213.0
Q ss_pred CchhHHHHHHHHHhc-CCHHHHHHHHhhCCC--C-C----hhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHH
Q 043490 136 AHVYVANALINMYSK-SCADEAWKVFENMEF--R-N----VISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQL 207 (589)
Q Consensus 136 ~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~--~-~----~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m 207 (589)
.....+......+.+ |++++|...|++..+ | + ...|..+...| ...|++++|+..|++.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~-------------~~~g~~~~A~~~~~~a 73 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAY-------------FYLHDYAKALEYHHHD 73 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH-------------HHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH-------------HHhcCHHHHHHHHHHH
Confidence 344455566677888 999999999988753 3 3 24677788888 7778888888887775
Q ss_pred HHc----CCCC-CHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhC----CC-CcHHHHHHHHHHHHhcCC-----------
Q 043490 208 QRE----GMAP-DWCTFSIVLKACAGLVTERHASAVHSLIAKYG----FE-DDTVIANALIHAYARCGS----------- 266 (589)
Q Consensus 208 ~~~----g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g----~~-~~~~~~~~li~~~~~~g~----------- 266 (589)
... +-.| ...++..+...+...|+++.|...+..+.+.. -+ ....++..+...|...|+
T Consensus 74 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 153 (406)
T 3sf4_A 74 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVG 153 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------C
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhh
Confidence 432 2222 24567778888899999999999998877642 11 124578889999999999
Q ss_pred ---------HHHHHHHHhhcCC-----C----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCCC----HHHHHHH
Q 043490 267 ---------ISLSKQVFDKMTY-----H----DLVSWNSILKAYALHGQAKEALQLFSNM-N---VQPD----SATFVSL 320 (589)
Q Consensus 267 ---------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p~----~~t~~~l 320 (589)
+++|...+++... . ...+|..+...|...|++++|+..|++. . -.++ ..++..+
T Consensus 154 ~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 233 (406)
T 3sf4_A 154 EFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 233 (406)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 9999998887641 1 2347888899999999999999999998 1 1222 2378888
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCccC----cchHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHH
Q 043490 321 LSACSHAGLVQEGNKVFHSMLENHGVVPQ----LDHYACMVDLLGRVGRILEAEKLIREM----PMEPD----SVIWSVL 388 (589)
Q Consensus 321 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~l 388 (589)
...+...|++++|...++...+...-.++ ..++..+...|.+.|++++|.+.+++. +..++ ..++..+
T Consensus 234 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 313 (406)
T 3sf4_A 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSL 313 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 88999999999999999887643211111 457888899999999999999999877 11122 5678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcC------CCChhHHHHHHHHhhhcCChH
Q 043490 389 LGSCRKHGETRLAELAATKLKQLE------PGDSLGFVQMSNIYCLSGSFN 433 (589)
Q Consensus 389 l~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~ 433 (589)
...+...|++++|...++++.++. +....++..+..+|...|+..
T Consensus 314 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 314 GNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 999999999999999999988753 223556778888888887764
No 63
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.34 E-value=1.8e-10 Score=118.58 Aligned_cols=308 Identities=11% Similarity=0.023 Sum_probs=186.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCH---H
Q 043490 79 LISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSK-SCA---D 154 (589)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~---~ 154 (589)
+...+.+.|++++|+++|++..+. | +...+..|-.+|.. |+. +
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~------------------------------g---~~~A~~~Lg~~y~~~g~~~d~~ 55 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL------------------------------G---YSEAQVGLADIQVGTRDPAQIK 55 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------------------------------T---CCTGGGTCC-------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC------------------------------C---CHHHHHHHHHHHHccCCCCCHH
Confidence 455667788888888888877543 1 12223334445555 666 8
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCc
Q 043490 155 EAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMK-----NEEEALFLFRQLQREGMAPDWCTFSIVLKACAGL 229 (589)
Q Consensus 155 ~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 229 (589)
+|...|++..+.+...+..+...+ ...+ ++++|+..|++....|... .+..+...+...
T Consensus 56 ~A~~~~~~A~~~~~~A~~~Lg~~~-------------~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~ 119 (452)
T 3e4b_A 56 QAEATYRAAADTSPRAQARLGRLL-------------AAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQY 119 (452)
T ss_dssp ---------------CHHHHHHHH-------------HTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-------------HhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhC
Confidence 888888887766666666666645 3333 6678888888887766433 333444444333
Q ss_pred CcH---HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC----CHHHHHHHHhhcCCCChhHHHHHHHHHHHcC---CHH
Q 043490 230 VTE---RHASAVHSLIAKYGFEDDTVIANALIHAYARCG----SISLSKQVFDKMTYHDLVSWNSILKAYALHG---QAK 299 (589)
Q Consensus 230 ~~~---~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~ 299 (589)
+.. ..+.+.+......| +......|...|...+ ..+.+..++......++.++..+...|...| +.+
T Consensus 120 ~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~ 196 (452)
T 3e4b_A 120 PHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQA 196 (452)
T ss_dssp GGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHH
Confidence 322 33455555555555 3445666777777776 4556666677766667778888888888888 788
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHhcc----CcHHHHHHHHHHhHHhcCCccCcchHHHHHHH-H--hhcCCHHHHH
Q 043490 300 EALQLFSNM--NVQPDSATFVSLLSACSHA----GLVQEGNKVFHSMLENHGVVPQLDHYACMVDL-L--GRVGRILEAE 370 (589)
Q Consensus 300 ~A~~~~~~m--~~~p~~~t~~~ll~a~~~~----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~ 370 (589)
+|++.|++. .-.++...+..+...|... +++++|.++|+... .-+...+..|..+ | ...|++++|+
T Consensus 197 ~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~ 271 (452)
T 3e4b_A 197 ELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMM 271 (452)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 888888888 3344555555666666554 68888888887763 2355566666666 4 4578888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhhcCCCChhHHHHHHHHhhh----cCChHHHHHHHHH
Q 043490 371 KLIREMPMEPDSVIWSVLLGSCRKHG-----ETRLAELAATKLKQLEPGDSLGFVQMSNIYCL----SGSFNKARLIRKE 441 (589)
Q Consensus 371 ~~~~~m~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 441 (589)
+.|++.--.-+...+..|...|. .| ++++|...|++.. |.++.++..|..+|.. ..++++|...|++
T Consensus 272 ~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 272 KYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 88887721225666766766666 55 8888888888877 6677888888888876 3478888888888
Q ss_pred HhcCCC
Q 043490 442 MKGSRV 447 (589)
Q Consensus 442 m~~~~~ 447 (589)
..+.|.
T Consensus 348 Aa~~g~ 353 (452)
T 3e4b_A 348 AARNGQ 353 (452)
T ss_dssp HHTTTC
T ss_pred HHhhCh
Confidence 777664
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.32 E-value=1.2e-11 Score=125.82 Aligned_cols=260 Identities=9% Similarity=-0.011 Sum_probs=199.0
Q ss_pred HHHHHHHHhc-CCHHHHHHHHhhCCC--C-Ch----hHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 043490 141 ANALINMYSK-SCADEAWKVFENMEF--R-NV----ISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQRE-- 210 (589)
Q Consensus 141 ~~~li~~y~~-g~~~~A~~lf~~m~~--~-~~----~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~-- 210 (589)
+..+...+.. |++++|...|++..+ | +. ..|..+...| ...|++++|+..|++....
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~-------------~~~g~~~~A~~~~~~al~~~~ 117 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAY-------------FYLGDYNKAMQYHKHDLTLAK 117 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH-------------HHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHH-------------HHCCCHHHHHHHHHHHHHHHH
Confidence 3445566777 999999999998753 3 32 4677788888 7778888888888776542
Q ss_pred --CC-CCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh----C-CCCcHHHHHHHHHHHHhcCC----------------
Q 043490 211 --GM-APDWCTFSIVLKACAGLVTERHASAVHSLIAKY----G-FEDDTVIANALIHAYARCGS---------------- 266 (589)
Q Consensus 211 --g~-~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g-~~~~~~~~~~li~~~~~~g~---------------- 266 (589)
+- ......+..+...+...|+++.|...+..+.+. + .+....++..+...|...|+
T Consensus 118 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~ 197 (411)
T 4a1s_A 118 SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE 197 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH
Confidence 11 223457778888889999999999999987765 1 12345678889999999999
Q ss_pred -HHHHHHHHhhcCC-----C----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---C----HHHHHHHHHHHhccC
Q 043490 267 -ISLSKQVFDKMTY-----H----DLVSWNSILKAYALHGQAKEALQLFSNM-NVQP---D----SATFVSLLSACSHAG 328 (589)
Q Consensus 267 -~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~----~~t~~~ll~a~~~~g 328 (589)
+++|.+.+++..+ . ...+|..+...|...|++++|++.|++. .+.| + ..++..+...+...|
T Consensus 198 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (411)
T 4a1s_A 198 ALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLG 277 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCc
Confidence 9999998887642 1 2347888899999999999999999998 2222 2 237788889999999
Q ss_pred cHHHHHHHHHHhHHhcCCcc----CcchHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcC
Q 043490 329 LVQEGNKVFHSMLENHGVVP----QLDHYACMVDLLGRVGRILEAEKLIREM-------PMEP-DSVIWSVLLGSCRKHG 396 (589)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g 396 (589)
++++|.+.++.......-.. ....+..+...|.+.|++++|.+.+++. +..+ ...++..+...+...|
T Consensus 278 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 357 (411)
T 4a1s_A 278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG 357 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Confidence 99999999988765321111 1457888899999999999999999887 1111 1457888899999999
Q ss_pred CHHHHHHHHHHHhhcCC
Q 043490 397 ETRLAELAATKLKQLEP 413 (589)
Q Consensus 397 ~~~~a~~~~~~~~~~~p 413 (589)
++++|...++++.++.+
T Consensus 358 ~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 358 GHERALKYAEQHLQLAX 374 (411)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 99999999999988765
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.31 E-value=4e-11 Score=106.95 Aligned_cols=165 Identities=13% Similarity=0.067 Sum_probs=135.2
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 043490 249 DDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPD-SATFVSLLSA 323 (589)
Q Consensus 249 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a 323 (589)
.+..+|..|...|.+.|++++|.+.|++.. +.+..+|..+...|.+.|++++|+..+++. ...|+ ...+..+...
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 356778888888888899999988888876 346678888888899999999999999888 55554 5566777778
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 043490 324 CSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLA 401 (589)
Q Consensus 324 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 401 (589)
+...++++.+.+.+....+.. +.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 888899999999998876532 225667888889999999999999999887 4455 488899999999999999999
Q ss_pred HHHHHHHhhcCCCC
Q 043490 402 ELAATKLKQLEPGD 415 (589)
Q Consensus 402 ~~~~~~~~~~~p~~ 415 (589)
+..++++++++|.+
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 99999999999854
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.31 E-value=6.6e-10 Score=108.15 Aligned_cols=215 Identities=9% Similarity=0.026 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-------CcCcH-------HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Q 043490 198 EEALFLFRQLQREGMAPDWCTFSIVLKACA-------GLVTE-------RHASAVHSLIAKYGFEDDTVIANALIHAYAR 263 (589)
Q Consensus 198 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~ 263 (589)
++|+.+|++..... +-+...|......+. ..|+. ++|..+++..++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777776642 334555555555543 23554 7777777777763124455677777777777
Q ss_pred cCCHHHHHHHHhhcCC--C-Chh-HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHh-ccCcHHHHHHH
Q 043490 264 CGSISLSKQVFDKMTY--H-DLV-SWNSILKAYALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACS-HAGLVQEGNKV 336 (589)
Q Consensus 264 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~-~~g~~~~a~~~ 336 (589)
.|++++|.++|++..+ | +.. .|..++..+.+.|+.++|..+|++. ...|+ ...|........ ..|+.++|.++
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777652 2 233 6777777777777777777777777 54443 233333322211 25777777777
Q ss_pred HHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 043490 337 FHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-P---MEP--DSVIWSVLLGSCRKHGETRLAELAATKLKQ 410 (589)
Q Consensus 337 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 410 (589)
|+..++.. +.+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..+++++.+
T Consensus 192 ~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 192 FELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77766542 124456666777777777777777777766 1 244 356677777777777777777777777777
Q ss_pred cCCCC
Q 043490 411 LEPGD 415 (589)
Q Consensus 411 ~~p~~ 415 (589)
..|++
T Consensus 270 ~~p~~ 274 (308)
T 2ond_A 270 AFREE 274 (308)
T ss_dssp HTTTT
T ss_pred Hcccc
Confidence 77654
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.30 E-value=1.5e-10 Score=112.72 Aligned_cols=211 Identities=6% Similarity=0.007 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-------cCCH-------HHHHHHHhhcCC---C-ChhHHHHHHHHHHH
Q 043490 233 RHASAVHSLIAKYGFEDDTVIANALIHAYAR-------CGSI-------SLSKQVFDKMTY---H-DLVSWNSILKAYAL 294 (589)
Q Consensus 233 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 294 (589)
+.|..+|+.+++.. +.+..+|..++..+.. .|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888898888864 6778888888887763 5885 899999998753 3 55689999999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHh-hcCCHHHH
Q 043490 295 HGQAKEALQLFSNM-NVQPDSA--TFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLG-RVGRILEA 369 (589)
Q Consensus 295 ~g~~~~A~~~~~~m-~~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~-~~g~~~~A 369 (589)
.|++++|.++|++. .+.|+.. .|..+...+.+.|++++|.++|+..++. .| +...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999 8888643 7889999999999999999999998743 34 3444444333322 36999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc---CCC-ChhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 370 EKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQL---EPG-DSLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 370 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
.++|++. ...| +...|..++..+.+.|++++|..+|+++++. .|. ....|..++..+.+.|+.++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999988 3334 5889999999999999999999999999985 443 56788899999999999999999999987
Q ss_pred cCCC
Q 043490 444 GSRV 447 (589)
Q Consensus 444 ~~~~ 447 (589)
+...
T Consensus 269 ~~~p 272 (308)
T 2ond_A 269 TAFR 272 (308)
T ss_dssp HHTT
T ss_pred HHcc
Confidence 6543
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=6e-11 Score=119.49 Aligned_cols=222 Identities=9% Similarity=-0.040 Sum_probs=169.7
Q ss_pred HHHHHhCcCcHHHHHHHHHHHHHh----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC-----hhHHH
Q 043490 222 VLKACAGLVTERHASAVHSLIAKY----GFED-DTVIANALIHAYARCGSISLSKQVFDKMTY-----HD-----LVSWN 286 (589)
Q Consensus 222 ll~a~~~~~~~~~a~~i~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 286 (589)
....+...|+++.|...+..+.+. +-++ ...++..+...|...|++++|...+++..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445567889999999999998875 2111 346788999999999999999999887651 22 35788
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CC---CCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CC-ccCcchHH
Q 043490 287 SILKAYALHGQAKEALQLFSNM-NV---QPDS----ATFVSLLSACSHAGLVQEGNKVFHSMLENH---GV-VPQLDHYA 354 (589)
Q Consensus 287 ~li~~~~~~g~~~~A~~~~~~m-~~---~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~~~~ 354 (589)
.+...|...|++++|++.|++. .+ .++. .++..+...+...|++++|.+.++...+-. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999988 21 1222 478888999999999999999998876521 22 22345788
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcCCCChhHHHHHHH
Q 043490 355 CMVDLLGRVGRILEAEKLIREM-PM-----EPD-SVIWSVLLGSCRKHGE---TRLAELAATKLKQLEPGDSLGFVQMSN 424 (589)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 424 (589)
.+...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ .++|...+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 8999999999999999999887 11 222 3345667778888888 67777777665 222334567889999
Q ss_pred HhhhcCChHHHHHHHHHHhc
Q 043490 425 IYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 425 ~~~~~g~~~~a~~~~~~m~~ 444 (589)
.|.+.|++++|...+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=1.9e-10 Score=115.87 Aligned_cols=221 Identities=8% Similarity=-0.010 Sum_probs=174.2
Q ss_pred HHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhC--C----CCcHHHHHHHHHH
Q 043490 192 AKMKNEEEALFLFRQLQRE----GMAP-DWCTFSIVLKACAGLVTERHASAVHSLIAKYG--F----EDDTVIANALIHA 260 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~----~~~~~~~~~li~~ 260 (589)
...|++++|+..|++.... +-.+ ...++..+...+...|+.+.|...+...++.- . +....+++.+...
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 7889999999999998763 1111 23578888888999999999999999887652 1 1124578889999
Q ss_pred HHhcCCHHHHHHHHhhcCC-----CCh----hHHHHHHHHHHHcCCHHHHHHHHHhC-C-----CC-CC-HHHHHHHHHH
Q 043490 261 YARCGSISLSKQVFDKMTY-----HDL----VSWNSILKAYALHGQAKEALQLFSNM-N-----VQ-PD-SATFVSLLSA 323 (589)
Q Consensus 261 ~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m-~-----~~-p~-~~t~~~ll~a 323 (589)
|...|++++|...|++..+ ++. .++..+...|...|++++|++.|++. . .. |+ ..++..+...
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 9999999999999988761 222 47888999999999999999999998 2 22 43 4578889999
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCccC---cchHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC
Q 043490 324 CSHAGLVQEGNKVFHSMLENHGVVPQ---LDHYACMVDLLGRVGR---ILEAEKLIREMPMEPD-SVIWSVLLGSCRKHG 396 (589)
Q Consensus 324 ~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g 396 (589)
+...|++++|.+.++...+...-..+ ...+..+...|...|+ +++|+.++++.+..|+ ...+..+...|...|
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g 353 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERK 353 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999887643211112 2235678888899999 9999999999965555 557778899999999
Q ss_pred CHHHHHHHHHHHhhcC
Q 043490 397 ETRLAELAATKLKQLE 412 (589)
Q Consensus 397 ~~~~a~~~~~~~~~~~ 412 (589)
++++|...++++.++.
T Consensus 354 ~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 354 NFQKASAYFLKVEQVR 369 (383)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988754
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.28 E-value=5.5e-11 Score=116.59 Aligned_cols=258 Identities=11% Similarity=-0.003 Sum_probs=193.0
Q ss_pred HHHHHHhc-CCHHHHHHHHhhCCC--C-C----hhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 043490 143 ALINMYSK-SCADEAWKVFENMEF--R-N----VISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQRE---- 210 (589)
Q Consensus 143 ~li~~y~~-g~~~~A~~lf~~m~~--~-~----~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~---- 210 (589)
.....+.. |++++|...|++..+ | + ...|..+...| ...|++++|++.+++....
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~-------------~~~g~~~~A~~~~~~al~~~~~~ 76 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAY-------------FYLHDYAKALEYHHHDLTLARTI 76 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH-------------HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHHhhcc
Confidence 34456777 999999999998752 3 3 35677778888 7777777777777765432
Q ss_pred CCCC-CHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCC-CCc----HHHHHHHHHHHHhcCC------------------
Q 043490 211 GMAP-DWCTFSIVLKACAGLVTERHASAVHSLIAKYGF-EDD----TVIANALIHAYARCGS------------------ 266 (589)
Q Consensus 211 g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~----~~~~~~li~~~~~~g~------------------ 266 (589)
+-.| ...++..+...+...|+++.|...+....+..- .++ ..++..+...|...|+
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~ 156 (338)
T 3ro2_A 77 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR 156 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHH
Confidence 2122 245677888888999999999999998766421 112 4478889999999999
Q ss_pred --HHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHhcc
Q 043490 267 --ISLSKQVFDKMTY-----HD----LVSWNSILKAYALHGQAKEALQLFSNM-NV---QPD----SATFVSLLSACSHA 327 (589)
Q Consensus 267 --~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~t~~~ll~a~~~~ 327 (589)
+++|...+++... .+ ..++..+...|...|++++|++.+++. .. .++ ..++..+...+...
T Consensus 157 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 236 (338)
T 3ro2_A 157 NALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 236 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc
Confidence 9999998887641 12 347888889999999999999999998 21 122 23778888899999
Q ss_pred CcHHHHHHHHHHhHHhcCCccC----cchHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHc
Q 043490 328 GLVQEGNKVFHSMLENHGVVPQ----LDHYACMVDLLGRVGRILEAEKLIREM-------PMEPD-SVIWSVLLGSCRKH 395 (589)
Q Consensus 328 g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~ 395 (589)
|++++|.+.++...+...-.++ ...+..+...|...|++++|...+++. +..+. ..++..+...+...
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (338)
T 3ro2_A 237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 9999999999887643211111 457788889999999999999999877 11111 55788889999999
Q ss_pred CCHHHHHHHHHHHhhcCC
Q 043490 396 GETRLAELAATKLKQLEP 413 (589)
Q Consensus 396 g~~~~a~~~~~~~~~~~p 413 (589)
|++++|...++++.++.+
T Consensus 317 g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 317 GNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp TCHHHHHHHHHHHHHC--
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 999999999999988765
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=4.1e-12 Score=123.55 Aligned_cols=229 Identities=15% Similarity=0.129 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHh-------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C-
Q 043490 216 WCTFSIVLKACAGLVTERHASAVHSLIAKY-------GFEDDTVIANALIHAYARCGSISLSKQVFDKMTY-------H- 280 (589)
Q Consensus 216 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~- 280 (589)
..++..+...+...|+++.|..++..+.+. ..+....++..+...|...|++++|...|++... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456667777777778888888888777663 2344456677777888888888888877776541 1
Q ss_pred ---ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC--------CC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---
Q 043490 281 ---DLVSWNSILKAYALHGQAKEALQLFSNM-NV--------QP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENH--- 344 (589)
Q Consensus 281 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~--------~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--- 344 (589)
...+|..+...|...|++++|++.|++. .. .| ...++..+...+...|++++|.++++.+.+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 2346777777788888888888888777 22 12 23456677777888888888888887775431
Q ss_pred --CCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-C---------CCCC-------HHHHHHHHHHHHHcCCHHHHHHH
Q 043490 345 --GVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-P---------MEPD-------SVIWSVLLGSCRKHGETRLAELA 404 (589)
Q Consensus 345 --~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---------~~p~-------~~~~~~ll~~~~~~g~~~~a~~~ 404 (589)
+..| ....+..+...|.+.|++++|.+.++++ . ..|. ...+..+...+...+.+..+...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1112 2346777788888888888888888766 1 1111 11222233334445556666667
Q ss_pred HHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 405 ATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 405 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
++......|.+..++..++.+|.+.|++++|.+.+++..+
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777788888999999999999999999987654
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.27 E-value=3.7e-11 Score=129.71 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=121.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHH
Q 043490 282 LVSWNSILKAYALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVD 358 (589)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 358 (589)
..+|+.+...|.+.|++++|++.|++. .+.|+ ..++..+..++.+.|++++|.+.|++.++. .| +...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 345666666677777777777777776 55664 456677777777777777777777776543 44 3556777777
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHH
Q 043490 359 LLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKAR 436 (589)
Q Consensus 359 ~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 436 (589)
+|.+.|++++|++.|++. .+.|+ ...|..+..++...|++++|+..++++++++|+++.++..|+.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 777778888887777776 44564 7888889999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHh
Q 043490 437 LIRKEMK 443 (589)
Q Consensus 437 ~~~~~m~ 443 (589)
+.+++..
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=4.6e-10 Score=99.54 Aligned_cols=160 Identities=14% Similarity=0.054 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHh
Q 043490 284 SWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLG 361 (589)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 361 (589)
.|..+...+...|++++|++.|+++ ...| +..++..+...+...|++++|.+.++.+.+.. +.+...+..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 4555666777777777777777777 4444 45567777777777888888888887776531 224556777778888
Q ss_pred hcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHH
Q 043490 362 RVGRILEAEKLIREM-PME-PDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIR 439 (589)
Q Consensus 362 ~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 439 (589)
..|++++|.+.++++ ... .+...|..+...+...|++++|...++++.+..|.++.++..++.+|...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888776 223 357788888889999999999999999999999988899999999999999999999999
Q ss_pred HHHhcC
Q 043490 440 KEMKGS 445 (589)
Q Consensus 440 ~~m~~~ 445 (589)
++..+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 887653
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=1.6e-11 Score=119.32 Aligned_cols=234 Identities=12% Similarity=0.081 Sum_probs=166.1
Q ss_pred hhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHhCcCcHHHHHHHHH
Q 043490 168 VISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQRE-------GMAPDWCTFSIVLKACAGLVTERHASAVHS 240 (589)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 240 (589)
..+|..+...| ...|++++|+.+|+++.+. ..+.....+..+...+...|+++.|...+.
T Consensus 27 ~~~~~~l~~~~-------------~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 93 (311)
T 3nf1_A 27 LRTLHNLVIQY-------------ASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLN 93 (311)
T ss_dssp HHHHHHHHHHH-------------HHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45677888888 7788888888888877652 223345678888888999999999999999
Q ss_pred HHHHh------C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCCHHHHH
Q 043490 241 LIAKY------G-FEDDTVIANALIHAYARCGSISLSKQVFDKMTY-------H----DLVSWNSILKAYALHGQAKEAL 302 (589)
Q Consensus 241 ~~~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~ 302 (589)
.+++. + .+....++..+...|...|++++|...|++..+ + ...+|..+...|...|++++|+
T Consensus 94 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 173 (311)
T 3nf1_A 94 DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE 173 (311)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98775 2 233467888999999999999999999988752 1 2357888899999999999999
Q ss_pred HHHHhC-CC--------CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCccCcch-------HHHHHHH
Q 043490 303 QLFSNM-NV--------QPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENH------GVVPQLDH-------YACMVDL 359 (589)
Q Consensus 303 ~~~~~m-~~--------~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~~~~-------~~~li~~ 359 (589)
+.|+++ .. .|+ ..++..+...+...|++++|.+.++.+.+.. ...+.... +..+...
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK 253 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc
Confidence 999998 22 333 3477888899999999999999999886531 11222222 2222233
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 043490 360 LGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPG 414 (589)
Q Consensus 360 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 414 (589)
+...+.+.+|...++.. ...|+ ..+|..+...|...|++++|...+++++++.|.
T Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 254 QKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 34445555666666665 23343 678899999999999999999999999987763
No 75
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.24 E-value=1.8e-08 Score=107.58 Aligned_cols=416 Identities=12% Similarity=0.036 Sum_probs=283.1
Q ss_pred HHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCC---hhHHHHHH
Q 043490 23 QAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPK--R-NVVSWTALISGYAQHGN---AEECFRLF 96 (589)
Q Consensus 23 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~ 96 (589)
+-...++..+...| .|..+|..++..+.+.+.++.|+.+|+++.. | ....|...+..-.+.|+ ++.+..+|
T Consensus 50 d~i~~lE~~l~~np---~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 50 DVIGKLNDMIEEQP---TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCc---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 34555677766667 8999999999999999999999999998874 3 55678888888888898 99999999
Q ss_pred HHHHhcc--CCCceeHHHHHHHhc----h--------hhHHHHHHHHHH-hcC-CCc-hhHHHHHHHHHh---------c
Q 043490 97 CSLLQYF--FPNEFSLASVLISCD----Y--------LHGKLVHALALK-FSL-DAH-VYVANALINMYS---------K 150 (589)
Q Consensus 97 ~~m~~~~--~p~~~t~~~~l~a~~----~--------~~~~~~~~~~~~-~g~-~~~-~~~~~~li~~y~---------~ 150 (589)
++.+... .|+...|..-+.-.. . ...+.++..++. .|. .++ ...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998873 376666665544321 1 223466666553 466 554 468888887654 2
Q ss_pred -CCHHHHHHHHhhCCC-C--C-hhHHH---HHHHHHHcCCcHHHHHHHH-HHcCCHHHHHHHHHHHHH--cCCC------
Q 043490 151 -SCADEAWKVFENMEF-R--N-VISWN---SMIAAFRACKLEAQAIELF-AKMKNEEEALFLFRQLQR--EGMA------ 213 (589)
Q Consensus 151 -g~~~~A~~lf~~m~~-~--~-~~~~~---~li~~~~~~g~~~~a~~~~-~~~g~~~~A~~~~~~m~~--~g~~------ 213 (589)
++++.++++|++... | + ...|. .+...+ .... +...+ .....++.|...+.++.. .++.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~--~~~~--a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~ 282 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDV--NQLT--ARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPIT 282 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHH--CTTT--HHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc--Ccch--HHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccc
Confidence 356789999998764 3 1 12332 222221 0000 11111 112234445555555432 1111
Q ss_pred ---------C-----CH---HHHHHHHHHHhCcC-------cHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHH
Q 043490 214 ---------P-----DW---CTFSIVLKACAGLV-------TERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISL 269 (589)
Q Consensus 214 ---------p-----~~---~t~~~ll~a~~~~~-------~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 269 (589)
| +. ..|...+.---..+ ..+.+..+|++++..- +-+..+|-..+..+.+.|+.++
T Consensus 283 ~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~ 361 (679)
T 4e6h_A 283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDST 361 (679)
T ss_dssp STTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTT
T ss_pred cccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHH
Confidence 1 11 22333333222221 2344567788887763 6678888888888889999999
Q ss_pred HH-HHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-----------CCC------------HHHHHHHH
Q 043490 270 SK-QVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NV-----------QPD------------SATFVSLL 321 (589)
Q Consensus 270 A~-~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-----------~p~------------~~t~~~ll 321 (589)
|. .+|++.. ..+...|-..+...-+.|+.++|.++|+++ .. .|+ ...|...+
T Consensus 362 a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 362 VITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 96 9998876 345667888888899999999999999998 32 142 23577777
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCH
Q 043490 322 SACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVG-RILEAEKLIREM--PMEPDSVIWSVLLGSCRKHGET 398 (589)
Q Consensus 322 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~ 398 (589)
....+.|..+.|+++|....+.. -.+....|...+.+-.+.| +.+.|.++|+.. ...-+...|...+......|+.
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH
Confidence 77778899999999999987541 1122334544444444544 589999999987 2223577888888888889999
Q ss_pred HHHHHHHHHHhhcCCC---ChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCC
Q 043490 399 RLAELAATKLKQLEPG---DSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRV 447 (589)
Q Consensus 399 ~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 447 (589)
+.|..+|++++...|+ ....|...+..-.+.|+.+.+.++.+++.+.-.
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999998773 445678888888899999999999999987543
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.21 E-value=2e-10 Score=118.91 Aligned_cols=207 Identities=11% Similarity=-0.026 Sum_probs=176.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 043490 196 NEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTE-RHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVF 274 (589)
Q Consensus 196 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~-~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 274 (589)
..++++..+.+.... .+.+...+..+..++...|++ ++|.+.++.+++.. +.+..++..+...|.+.|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 356777777776553 234778888999999999999 99999999999886 667889999999999999999999999
Q ss_pred hhcC--CCChhHHHHHHHHHHHc---------CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhcc--------CcHHHH
Q 043490 275 DKMT--YHDLVSWNSILKAYALH---------GQAKEALQLFSNM-NVQPD-SATFVSLLSACSHA--------GLVQEG 333 (589)
Q Consensus 275 ~~~~--~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~--------g~~~~a 333 (589)
++.. .|+...|..+...|... |++++|++.|++. ...|+ ...+..+..++... |++++|
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 9886 56778899999999999 9999999999999 66674 67888888899888 999999
Q ss_pred HHHHHHhHHhcCCcc----CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043490 334 NKVFHSMLENHGVVP----QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATK 407 (589)
Q Consensus 334 ~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 407 (589)
.+.|+...+. .| +...|..+...|.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...+++
T Consensus 241 ~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998764 34 6778999999999999999999999988 44564 77888999999999988888775543
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.20 E-value=8.5e-09 Score=103.12 Aligned_cols=253 Identities=13% Similarity=0.020 Sum_probs=185.6
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhCcCcHHHHHHHHHHHHHhCC-CCc----HHHHHHHHHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWC----TFSIVLKACAGLVTERHASAVHSLIAKYGF-EDD----TVIANALIHAYA 262 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~----~~~~~~li~~~~ 262 (589)
...|++++|...+++........+.. .+..+...+...|+++.|...+....+..- ..+ ..+...+...|.
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 77899999999999987754223332 455566677889999999999998876421 111 234567888899
Q ss_pred hcCCHHHHHHHHhhcCC----------C-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC----C--CHHHHHHHHHHH
Q 043490 263 RCGSISLSKQVFDKMTY----------H-DLVSWNSILKAYALHGQAKEALQLFSNM-NVQ----P--DSATFVSLLSAC 324 (589)
Q Consensus 263 ~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~----p--~~~t~~~ll~a~ 324 (589)
..|++++|...+++... + ....+..+...|...|++++|...+++. .+. | ...++..+...+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 99999999999987651 1 1245667888899999999999999987 221 2 234677788888
Q ss_pred hccCcHHHHHHHHHHhHHhcCCccCcchHH-----HHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHH
Q 043490 325 SHAGLVQEGNKVFHSMLENHGVVPQLDHYA-----CMVDLLGRVGRILEAEKLIREM-PMEPD-----SVIWSVLLGSCR 393 (589)
Q Consensus 325 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~ 393 (589)
...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|. ...+..+...+.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 999999999999998764322111111222 2334577999999999999988 22221 335677888999
Q ss_pred HcCCHHHHHHHHHHHhhcCCC-----C-hhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 394 KHGETRLAELAATKLKQLEPG-----D-SLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 394 ~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
..|++++|...++++.+..+. + ...+..+..+|...|+.++|...+++...
T Consensus 265 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999998764321 1 23677889999999999999999988764
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=8e-10 Score=102.26 Aligned_cols=203 Identities=12% Similarity=0.023 Sum_probs=146.3
Q ss_pred CCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHH
Q 043490 214 PDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILK 290 (589)
Q Consensus 214 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 290 (589)
.|+..+......+...|++++|...+...++..-+++...+..+...|.+.|++++|.+.|++.. ..+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45677777888888889999999999988887633677777778888889999999999888876 234567888888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccC---cchHHHHHH
Q 043490 291 AYALHGQAKEALQLFSNM-NVQPD-S-------ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQ---LDHYACMVD 358 (589)
Q Consensus 291 ~~~~~g~~~~A~~~~~~m-~~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~ 358 (589)
.|...|++++|++.|++. ...|+ . ..|..+...+...|++++|.+.|+..+ .+.|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHHH
Confidence 888899999999999888 55564 3 346667777788888888888888775 33554 456666777
Q ss_pred HHhhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHh
Q 043490 359 LLGRVGRI--LEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIY 426 (589)
Q Consensus 359 ~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 426 (589)
.|...|+. ++|..+ . ..+...+.... ....+.+++|...++++.+++|+++.+...+..+.
T Consensus 162 ~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 77655543 222211 1 12344443333 23445679999999999999998887777666554
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.16 E-value=7.9e-10 Score=111.01 Aligned_cols=300 Identities=11% Similarity=-0.006 Sum_probs=200.4
Q ss_pred CCchhHHHHHHHHH--hc-CCHHHHHHHHhhCCC--------CChhHHHHHHHHHHcCCcHHHHHHHHHHc-C------C
Q 043490 135 DAHVYVANALINMY--SK-SCADEAWKVFENMEF--------RNVISWNSMIAAFRACKLEAQAIELFAKM-K------N 196 (589)
Q Consensus 135 ~~~~~~~~~li~~y--~~-g~~~~A~~lf~~m~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~-g------~ 196 (589)
.|+..+.+.|-.-| .+ +++++|..+++++.+ .++..|-.++..- ..++... . .
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r---------~~~~~~~~~~~~~~~~ 77 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFR---------HQLMLDYLEPGKTYGN 77 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHH---------HHHHHHTCCC------
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---------HHHHHhhcCccccccc
Confidence 45666667777777 55 999999999886532 2333344444321 0000111 1 1
Q ss_pred HHHHHHHHHHHHHcCCCCCH-H---HHHHHHHHHhCcCcHHHHHHHHHHHHHhC--CC---CcHHHHHHHHHHHHhcCCH
Q 043490 197 EEEALFLFRQLQREGMAPDW-C---TFSIVLKACAGLVTERHASAVHSLIAKYG--FE---DDTVIANALIHAYARCGSI 267 (589)
Q Consensus 197 ~~~A~~~~~~m~~~g~~p~~-~---t~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~~---~~~~~~~~li~~~~~~g~~ 267 (589)
.....+.++.+.....+.+. . .+......+...|+++.|...+..+.+.. .+ ....++..+...|...|++
T Consensus 78 ~~~~~~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~ 157 (378)
T 3q15_A 78 RPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQT 157 (378)
T ss_dssp --CHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCc
Confidence 11222455554332111111 1 12223344578899999999999987652 11 1356788899999999999
Q ss_pred HHHHHHHhhcCC-----CC-----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHhccCc
Q 043490 268 SLSKQVFDKMTY-----HD-----LVSWNSILKAYALHGQAKEALQLFSNM-NV---QPD----SATFVSLLSACSHAGL 329 (589)
Q Consensus 268 ~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~t~~~ll~a~~~~g~ 329 (589)
+.|...+++..+ ++ ..+++.+...|...|++++|++.|++. .+ .++ ..++..+...+...|+
T Consensus 158 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 158 HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD 237 (378)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 999988887641 22 347888999999999999999999988 11 122 2467788889999999
Q ss_pred HHHHHHHHHHhHHhc---CCccCcchHHHHHHHHhhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHcCC--
Q 043490 330 VQEGNKVFHSMLENH---GVVPQLDHYACMVDLLGRVGRILEAEKLIREM----PM--EPD-SVIWSVLLGSCRKHGE-- 397 (589)
Q Consensus 330 ~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~-- 397 (589)
+++|.+.++...+-. +.+....++..+...|.+.|++++|...+++. +. .|. ...+..+...+...++
T Consensus 238 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~ 317 (378)
T 3q15_A 238 DQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDER 317 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 999999998876511 11223567888899999999999999999887 11 233 4456666666777788
Q ss_pred -HHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 398 -TRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 398 -~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
.++|...+++. ...|.....+..++..|.+.|++++|...+++..+
T Consensus 318 ~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 318 KIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67777777662 22233455677899999999999999999987753
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.15 E-value=1.6e-09 Score=95.95 Aligned_cols=165 Identities=15% Similarity=0.107 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHh
Q 043490 251 TVIANALIHAYARCGSISLSKQVFDKMTY---HDLVSWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACS 325 (589)
Q Consensus 251 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~ 325 (589)
...+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|.+.++++ ...| +...+..+...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45567788889999999999999998873 46678888999999999999999999998 5555 5678888888999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 043490 326 HAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAEL 403 (589)
Q Consensus 326 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 403 (589)
..|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999887642 335667888899999999999999999987 3334 57889999999999999999999
Q ss_pred HHHHHhhcCCCChh
Q 043490 404 AATKLKQLEPGDSL 417 (589)
Q Consensus 404 ~~~~~~~~~p~~~~ 417 (589)
.++++.+..|++..
T Consensus 166 ~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 166 HFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHCCCG
T ss_pred HHHHHHHcCCCchh
Confidence 99999998886654
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.14 E-value=5.7e-09 Score=104.68 Aligned_cols=220 Identities=11% Similarity=0.021 Sum_probs=172.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhC--C---C-CcHHHHHHHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGM-APD----WCTFSIVLKACAGLVTERHASAVHSLIAKYG--F---E-DDTVIANALIHA 260 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~---~-~~~~~~~~li~~ 260 (589)
...|++++|+..|++....-. .+| ..++..+...+...|+++.|...+....+.. . . ....+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 788999999999998875321 122 3567788888999999999999999887642 1 1 125678889999
Q ss_pred HHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-C-----CCCC-HHHHHHHHHHH
Q 043490 261 YARCGSISLSKQVFDKMTY-----HD----LVSWNSILKAYALHGQAKEALQLFSNM-N-----VQPD-SATFVSLLSAC 324 (589)
Q Consensus 261 ~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~-----~~p~-~~t~~~ll~a~ 324 (589)
|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|++. . ..|+ ..++..+...+
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 9999999999999987752 22 247888999999999999999999998 3 4444 45788888999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCccC---cchHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC
Q 043490 325 SHAGLVQEGNKVFHSMLENHGVVPQ---LDHYACMVDLLGRVGR---ILEAEKLIREMPMEPD-SVIWSVLLGSCRKHGE 397 (589)
Q Consensus 325 ~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~ 397 (589)
.+.|++++|...++...+...-.++ ...+..+...|...|+ +++|+..+++.+..|+ ...+..+...|...|+
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~ 351 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCH 351 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCC
Confidence 9999999999999988765332222 2245666677778888 9999999999865554 4567788899999999
Q ss_pred HHHHHHHHHHHhhc
Q 043490 398 TRLAELAATKLKQL 411 (589)
Q Consensus 398 ~~~a~~~~~~~~~~ 411 (589)
+++|...++++.+.
T Consensus 352 ~~~A~~~~~~al~~ 365 (378)
T 3q15_A 352 FEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.09 E-value=9.4e-08 Score=95.45 Aligned_cols=117 Identities=10% Similarity=0.064 Sum_probs=60.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC--C--CHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCc--HHHHH----HHHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMA--P--DWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDD--TVIAN----ALIHAY 261 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~----~li~~~ 261 (589)
...|++++|...+++....... + ...++..+...+...|++++|...++...+..-.++ ..... ..+..+
T Consensus 146 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
T 1hz4_A 146 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 6666666666666665543211 1 123455555556666666666666666554311111 11111 223345
Q ss_pred HhcCCHHHHHHHHhhcCCCCh-------hHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043490 262 ARCGSISLSKQVFDKMTYHDL-------VSWNSILKAYALHGQAKEALQLFSNM 308 (589)
Q Consensus 262 ~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m 308 (589)
...|++++|...+++...++. ..+..+...+...|++++|...+++.
T Consensus 226 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 566666666666666553211 13444555556666666666666554
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.06 E-value=7e-10 Score=119.76 Aligned_cols=162 Identities=15% Similarity=0.159 Sum_probs=123.5
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 043490 248 EDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPD-SATFVSLLS 322 (589)
Q Consensus 248 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~ 322 (589)
|.+...++.|...|.+.|++++|.+.|++.. ..+..+|+.+...|.+.|++++|++.|++. .+.|+ ..+|..+..
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3346677777777888888888888777765 335667777888888888888888888887 66675 457778888
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHH
Q 043490 323 ACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETR 399 (589)
Q Consensus 323 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~ 399 (589)
++...|++++|.+.|++.++. .| +...|..+..+|.+.|++++|++.|++. .+.|+ ...|..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888888888888888877643 44 4567788888888888888888888877 55665 778888888888888888
Q ss_pred HHHHHHHHHhhcC
Q 043490 400 LAELAATKLKQLE 412 (589)
Q Consensus 400 ~a~~~~~~~~~~~ 412 (589)
+|.+.++++.++.
T Consensus 163 ~A~~~~~kal~l~ 175 (723)
T 4gyw_A 163 DYDERMKKLVSIV 175 (723)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 8888888877643
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.06 E-value=3e-09 Score=101.33 Aligned_cols=144 Identities=13% Similarity=0.115 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh------CC-CCcHHHHHHHHHHHHhcCCHHHHH
Q 043490 199 EALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKY------GF-EDDTVIANALIHAYARCGSISLSK 271 (589)
Q Consensus 199 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~ 271 (589)
+|++++.+......+....++..+...+...|+++.|...+..+++. +- +....++..+...|...|++++|.
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 34444444433222234567778888888889999999888887765 22 234567778888888888888888
Q ss_pred HHHhhcCC-------C----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC--------CCC-HHHHHHHHHHHhccCcH
Q 043490 272 QVFDKMTY-------H----DLVSWNSILKAYALHGQAKEALQLFSNM-NV--------QPD-SATFVSLLSACSHAGLV 330 (589)
Q Consensus 272 ~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~--------~p~-~~t~~~ll~a~~~~g~~ 330 (589)
..|++... + ...+|..+...|...|++++|++.|++. .. .|+ ..++..+...+...|++
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 88876541 1 1345666677777777777777777766 22 222 34566666667777777
Q ss_pred HHHHHHHHHhHH
Q 043490 331 QEGNKVFHSMLE 342 (589)
Q Consensus 331 ~~a~~~~~~~~~ 342 (589)
++|.++++...+
T Consensus 186 ~~A~~~~~~~l~ 197 (283)
T 3edt_B 186 QDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766643
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.04 E-value=6.9e-10 Score=105.81 Aligned_cols=217 Identities=17% Similarity=0.193 Sum_probs=148.7
Q ss_pred CcCcHHHHHHHHHHHHH-------hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHH
Q 043490 228 GLVTERHASAVHSLIAK-------YGFEDDTVIANALIHAYARCGSISLSKQVFDKMTY-------H----DLVSWNSIL 289 (589)
Q Consensus 228 ~~~~~~~a~~i~~~~~~-------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li 289 (589)
..|+++.|...+++.++ ...+....++..+...|...|++++|...|++... + ...+|..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34444445444444433 22234567888999999999999999999987651 1 245788899
Q ss_pred HHHHHcCCHHHHHHHHHhC-CC--------CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCcc-CcchH
Q 043490 290 KAYALHGQAKEALQLFSNM-NV--------QPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENH-----GVVP-QLDHY 353 (589)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~m-~~--------~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~ 353 (589)
..|...|++++|++.|++. .. .|+ ..++..+...+...|++++|.++++...+.. +-.| ....+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998 22 232 4578888889999999999999998886531 1122 34578
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC----------CCCCC-HHHHHHHHHHHHHcCC------HHHHHHHHHHHhhcCCCCh
Q 043490 354 ACMVDLLGRVGRILEAEKLIREM----------PMEPD-SVIWSVLLGSCRKHGE------TRLAELAATKLKQLEPGDS 416 (589)
Q Consensus 354 ~~li~~~~~~g~~~~A~~~~~~m----------~~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~~ 416 (589)
..+...|.+.|++++|.+.+++. ...|. ...|..+.......+. +..+...++......|...
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 88899999999999999999876 11232 3344444333333332 2233333333323335556
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 417 LGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 417 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
.++..++.+|...|++++|..++++..+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788999999999999999999998764
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=3.3e-09 Score=102.27 Aligned_cols=187 Identities=9% Similarity=0.015 Sum_probs=97.6
Q ss_pred hCcCcHHHHHHHHHHHHHh----CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHH
Q 043490 227 AGLVTERHASAVHSLIAKY----GFEDD-TVIANALIHAYARCGSISLSKQVFDKMTY-----HD----LVSWNSILKAY 292 (589)
Q Consensus 227 ~~~~~~~~a~~i~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~ 292 (589)
...|++++|...+....+. |-+++ ..+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|
T Consensus 48 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~ 127 (292)
T 1qqe_A 48 RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEIL 127 (292)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3445555555555544332 21111 34555666666666666666666655431 11 23556666666
Q ss_pred HHc-CCHHHHHHHHHhC-CCCCC-------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcc-----hHHHHHH
Q 043490 293 ALH-GQAKEALQLFSNM-NVQPD-------SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLD-----HYACMVD 358 (589)
Q Consensus 293 ~~~-g~~~~A~~~~~~m-~~~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-----~~~~li~ 358 (589)
... |++++|+..|++. .+.|+ ..++..+...+...|++++|...|+...+...-.+... .|..+..
T Consensus 128 ~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 207 (292)
T 1qqe_A 128 ENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGL 207 (292)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Confidence 664 7777777666666 22221 23456666666777777777777766654311111111 3455556
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--HcCCHHHHHHHHHHHhhcCC
Q 043490 359 LLGRVGRILEAEKLIREM-PMEPDSV------IWSVLLGSCR--KHGETRLAELAATKLKQLEP 413 (589)
Q Consensus 359 ~~~~~g~~~~A~~~~~~m-~~~p~~~------~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p 413 (589)
+|...|++++|...|++. .+.|+.. .+..++.++. ..+++++|...++++.+++|
T Consensus 208 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 208 CQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 666667777777777665 3344311 2333444443 23456666666666655555
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.99 E-value=2.8e-08 Score=93.86 Aligned_cols=203 Identities=7% Similarity=-0.019 Sum_probs=136.7
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C---hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHH
Q 043490 248 EDDTVIANALIHAYARCGSISLSKQVFDKMTY--H-D---LVSWNSILKAYALHGQAKEALQLFSNM-NVQPD----SAT 316 (589)
Q Consensus 248 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~t 316 (589)
+.+...+-.+...+.+.|++++|...|+++.. | + ...+..+..+|.+.|++++|+..|++. ...|+ ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34556666777778888888888888887762 2 3 456777777788888888888888887 44442 235
Q ss_pred HHHHHHHHhc--------cCcHHHHHHHHHHhHHhcCCccCc-chHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 043490 317 FVSLLSACSH--------AGLVQEGNKVFHSMLENHGVVPQL-DHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSV 387 (589)
Q Consensus 317 ~~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 387 (589)
+..+..++.. .|++++|...|+.+++. .|+. .....+.......+.+ ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 5566666666 77888888888777654 2432 2222211111000000 122456
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCC---hhHHHHHHHHhhhc----------CChHHHHHHHHHHhcCCCccCCcee
Q 043490 388 LLGSCRKHGETRLAELAATKLKQLEPGD---SLGFVQMSNIYCLS----------GSFNKARLIRKEMKGSRVRKYPGLS 454 (589)
Q Consensus 388 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s 454 (589)
+...+...|+++.|+..++++++..|++ +..+..++.+|... |++++|...++++.+...
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p------- 226 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP------- 226 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-------
Confidence 7788999999999999999999999874 45788899999876 899999999999876432
Q ss_pred eEEECCEEEEEeeCCCCCccHHHHHHHHHHHHHHHHh
Q 043490 455 WIEIENRVHEFASGGKRHPQREAIFKKLEELIGQLKG 491 (589)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 491 (589)
.++...++...+.++...+.+
T Consensus 227 ----------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ----------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ----------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CChHHHHHHHHHHHHHHHHHH
Confidence 244555666666666666543
No 88
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.98 E-value=6.3e-08 Score=89.29 Aligned_cols=192 Identities=11% Similarity=0.029 Sum_probs=146.8
Q ss_pred ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhC
Q 043490 167 NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYG 246 (589)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 246 (589)
|+..|......+ ...|++++|+..|++......+++...+..+..++...|++++|...+...++..
T Consensus 6 ~~~~~~~~g~~~-------------~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 72 (228)
T 4i17_A 6 DPNQLKNEGNDA-------------LNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN 72 (228)
T ss_dssp CHHHHHHHHHHH-------------HHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHH-------------HHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence 456677777777 8999999999999999887644788888888889999999999999999999876
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-Ch-------hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--
Q 043490 247 FEDDTVIANALIHAYARCGSISLSKQVFDKMT--YH-DL-------VSWNSILKAYALHGQAKEALQLFSNM-NVQPD-- 313 (589)
Q Consensus 247 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-- 313 (589)
+.+..++..+...|.+.|++++|...|++.. .| +. ..|..+...+...|++++|++.|++. ...|+
T Consensus 73 -p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 151 (228)
T 4i17_A 73 -YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKW 151 (228)
T ss_dssp -CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHH
T ss_pred -cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcc
Confidence 6678899999999999999999999999886 23 44 45888888899999999999999999 88887
Q ss_pred H-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 043490 314 S-ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD 381 (589)
Q Consensus 314 ~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 381 (589)
. ..+..+..++...| ..+++.+... + ..+...|.... ....+.+++|...+++. ...|+
T Consensus 152 ~~~~~~~l~~~~~~~~-----~~~~~~a~~~-~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 152 KTDALYSLGVLFYNNG-----ADVLRKATPL-A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHGGG-T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHHH-----HHHHHHHHhc-c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC
Confidence 3 46666766665443 3444444221 1 11223333332 33456789999999888 45565
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.96 E-value=6e-09 Score=100.47 Aligned_cols=199 Identities=10% Similarity=-0.004 Sum_probs=148.0
Q ss_pred cHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCCHHHH
Q 043490 231 TERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTY-----HD----LVSWNSILKAYALHGQAKEA 301 (589)
Q Consensus 231 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 301 (589)
++++|...+..+ ...|...|++++|...|++... .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888887765 4467889999999999887652 12 46889999999999999999
Q ss_pred HHHHHhC-CCCC---C----HHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCccC----cchHHHHHHHHhhcCCHHH
Q 043490 302 LQLFSNM-NVQP---D----SATFVSLLSACSHA-GLVQEGNKVFHSMLENHGVVPQ----LDHYACMVDLLGRVGRILE 368 (589)
Q Consensus 302 ~~~~~~m-~~~p---~----~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 368 (589)
+..|++. .+.| + ..++..+...+... |++++|...|++..+-..-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999988 2222 2 35788889999996 9999999999988653211111 3468888999999999999
Q ss_pred HHHHHHhC-CCCCC---H-----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhH-----HHHHHHHhh--hcCCh
Q 043490 369 AEKLIREM-PMEPD---S-----VIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLG-----FVQMSNIYC--LSGSF 432 (589)
Q Consensus 369 A~~~~~~m-~~~p~---~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 432 (589)
|+..|++. ...|+ . ..|..+..++...|+++.|...+++.++++|..... +..++.+|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987 22332 1 257778888999999999999999999999865432 345666664 56778
Q ss_pred HHHHHHHHHHhc
Q 043490 433 NKARLIRKEMKG 444 (589)
Q Consensus 433 ~~a~~~~~~m~~ 444 (589)
++|...|+++..
T Consensus 257 ~~A~~~~~~~~~ 268 (292)
T 1qqe_A 257 SEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHhccCCc
Confidence 888888866543
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.94 E-value=1.8e-08 Score=95.16 Aligned_cols=199 Identities=12% Similarity=-0.010 Sum_probs=142.6
Q ss_pred CCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C---hhH
Q 043490 214 PDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDD---TVIANALIHAYARCGSISLSKQVFDKMTY--H-D---LVS 284 (589)
Q Consensus 214 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~ 284 (589)
.+...+-.....+.+.|++++|...+..+++.. +.+ ..++..+...|.+.|++++|...|++... | + ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456677777888889999999999999998874 334 67888899999999999999999999862 3 2 346
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHH
Q 043490 285 WNSILKAYAL--------HGQAKEALQLFSNM-NVQPDSA-TFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYA 354 (589)
Q Consensus 285 ~~~li~~~~~--------~g~~~~A~~~~~~m-~~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 354 (589)
+..+..++.. .|++++|+..|++. ...|+.. ....+. .+..+... ....+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~--------------~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQ--------------KIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHH--------------HHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHH--------------HHHHHHHH-----HHHHHH
Confidence 7778888888 99999999999999 6566532 221111 11111000 011245
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHhhcCCCChhH-
Q 043490 355 CMVDLLGRVGRILEAEKLIREM-PMEPD----SVIWSVLLGSCRKH----------GETRLAELAATKLKQLEPGDSLG- 418 (589)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~- 418 (589)
.+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6677888889999999988877 22333 45677777788766 88999999999999999977543
Q ss_pred --HHHHHHHhhhcCCh
Q 043490 419 --FVQMSNIYCLSGSF 432 (589)
Q Consensus 419 --~~~l~~~~~~~g~~ 432 (589)
...+..++.+.|++
T Consensus 233 ~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 233 TAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 33444444444443
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.91 E-value=2.5e-09 Score=91.77 Aligned_cols=138 Identities=9% Similarity=-0.028 Sum_probs=99.5
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHH
Q 043490 291 AYALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRIL 367 (589)
Q Consensus 291 ~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 367 (589)
.+...|++++|++.+++. ...|+ ...+..+...|.+.|++++|.+.|+..++. .| +...|..+...|.+.|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchH
Confidence 344556677777777776 55553 335556677777777788887777777643 34 4567777777788888888
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHH-HHHHHhhcCCCChhHHHHHHHHhhhcCC
Q 043490 368 EAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAEL-AATKLKQLEPGDSLGFVQMSNIYCLSGS 431 (589)
Q Consensus 368 ~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 431 (589)
+|+..|++. .+.|+ ...|..+...+.+.|+.++|.+ .++++++++|.++.+|.....++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888887776 44564 7788888888888888876555 4588899999888888888888877775
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.90 E-value=4.7e-08 Score=90.10 Aligned_cols=179 Identities=9% Similarity=-0.014 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH----HHHH
Q 043490 251 TVIANALIHAYARCGSISLSKQVFDKMTY--HD----LVSWNSILKAYALHGQAKEALQLFSNM-NVQPDSA----TFVS 319 (589)
Q Consensus 251 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----t~~~ 319 (589)
...+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|++. ...|+.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34555667778888999999999888762 32 246777888888899999999998888 5555432 3444
Q ss_pred HHHHHhc------------------cCcHHHHHHHHHHhHHhcCCccCcc-hHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 043490 320 LLSACSH------------------AGLVQEGNKVFHSMLENHGVVPQLD-HYACMVDLLGRVGRILEAEKLIREMPMEP 380 (589)
Q Consensus 320 ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p 380 (589)
+..++.. .|+.++|...|+.+++. .|+.. .+.+.. +.+.+....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~----~l~~~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATK----RLVFLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHH----HHHHHHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHH----HHHHHHHHH----------
Confidence 4444433 35666666666666533 23322 111111 000000000
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh---hHHHHHHHHhhhcCChHHHHHHHHHHhcCCC
Q 043490 381 DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDS---LGFVQMSNIYCLSGSFNKARLIRKEMKGSRV 447 (589)
Q Consensus 381 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 447 (589)
......+...+.+.|+++.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01113456678899999999999999999999775 5688999999999999999999999887654
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=3.2e-08 Score=82.16 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=89.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 043490 317 FVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRK 394 (589)
Q Consensus 317 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 394 (589)
+..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|...++++ ...| +...|..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4455555666666666666666664431 123445566666666777777777777665 2223 46677778888888
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 395 HGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 395 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
.|++++|...++++.+..|.+..++..++.+|.+.|++++|...++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 888888888888888888888888888888888888888888888877653
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.89 E-value=7.9e-08 Score=91.26 Aligned_cols=172 Identities=8% Similarity=-0.003 Sum_probs=131.3
Q ss_pred HHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043490 270 SKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQP---DSATFVSLLSACSHAGLVQEGNKVFHSMLE 342 (589)
Q Consensus 270 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 342 (589)
|...|++.. .++..++..+..++...|++++|++++.+. +..| +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 677777665 355666677888899999999999999987 5554 345777888899999999999999999864
Q ss_pred hcCCcc-----CcchHHHHHHH--HhhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-
Q 043490 343 NHGVVP-----QLDHYACMVDL--LGRVG--RILEAEKLIREM-PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQL- 411 (589)
Q Consensus 343 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 411 (589)
. .| +..+...|..+ ....| +..+|..+|+++ ...|+..+-..++.++.+.|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 45 24555556555 33334 899999999998 44466444455556888999999999999988775
Q ss_pred ---------CCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 412 ---------EPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 412 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
+|.++.++..++..+...|+ +|.++++++++..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 48888888888888877887 8889999888754
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.88 E-value=7e-09 Score=112.36 Aligned_cols=166 Identities=10% Similarity=-0.022 Sum_probs=133.5
Q ss_pred HhcCCHHHHHHHHhhcC-----------CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccC
Q 043490 262 ARCGSISLSKQVFDKMT-----------YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAG 328 (589)
Q Consensus 262 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g 328 (589)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++. ...| +...+..+..++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 67788888888888765 345678888888888999999999999888 6666 4567888888888899
Q ss_pred cHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 043490 329 LVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAA 405 (589)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 405 (589)
++++|.+.|++..+. .| +...|..+..+|.+.|++++ ++.|++. ...|+ ...|..+..++...|++++|+..+
T Consensus 482 ~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 482 DYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp CHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999888654 45 56678888888999999988 8888877 44554 778888889999999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHhhhcCC
Q 043490 406 TKLKQLEPGDSLGFVQMSNIYCLSGS 431 (589)
Q Consensus 406 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 431 (589)
+++.+++|.+..++..++.+|...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999888889899998877665
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.85 E-value=2.3e-08 Score=96.05 Aligned_cols=158 Identities=8% Similarity=-0.040 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHH-HHH
Q 043490 283 VSWNSILKAYALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACM-VDL 359 (589)
Q Consensus 283 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-i~~ 359 (589)
..+..+...+.+.|++++|+..|++. ...|+ ...+..+...+...|++++|...++.+.. ..|+....... ...
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcchHHHHHHHHHH
Confidence 34444444455555555555555555 33442 33444455555555555555555554432 12322211111 122
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC--hhHHHHHHHHhhhcCChHHH
Q 043490 360 LGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGD--SLGFVQMSNIYCLSGSFNKA 435 (589)
Q Consensus 360 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a 435 (589)
+.+.++.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|.+ ...+..|+.+|...|+.++|
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 44455555566666555 3345 47888889999999999999999999999999877 77899999999999999999
Q ss_pred HHHHHHHh
Q 043490 436 RLIRKEMK 443 (589)
Q Consensus 436 ~~~~~~m~ 443 (589)
...+++..
T Consensus 275 ~~~~r~al 282 (287)
T 3qou_A 275 ASXYRRQL 282 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887643
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.82 E-value=7.8e-08 Score=79.73 Aligned_cols=129 Identities=19% Similarity=0.298 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHh
Q 043490 284 SWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLG 361 (589)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 361 (589)
+|..+...+...|++++|+.+|+++ ...| +...+..+...+...|++++|.++++.+.+.. +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHH
Confidence 4566667777777777777777777 3333 45566667777777778888888777775431 224456677777788
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 043490 362 RVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPG 414 (589)
Q Consensus 362 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 414 (589)
+.|++++|.+.++++ ...| +...|..+...+...|++++|...++++.+.+|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 888888888888776 2233 4777888888888889999999999888887774
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.81 E-value=1.2e-07 Score=90.07 Aligned_cols=240 Identities=10% Similarity=0.017 Sum_probs=164.2
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChh-HHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043490 146 NMYSKSCADEAWKVFENMEFRNVI-SWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLK 224 (589)
Q Consensus 146 ~~y~~g~~~~A~~lf~~m~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 224 (589)
+.|--|.+..+..-...+...+.. .---+.++| ...|++... ..-.|....+..+..
T Consensus 22 n~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~-------------iAlg~~~~~---------~~~~~~~~a~~~la~ 79 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTL-------------LALGQYQSQ---------DPTSKLGKVLDLYVQ 79 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHH-------------HHTTCCCCC---------CSSSTTHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHH-------------HHcCCCccC---------CCCCHHHHHHHHHHH
Confidence 344448888888766666432222 222344667 555554421 012334333333332
Q ss_pred HHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCCHH
Q 043490 225 ACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTY-----HDLVSWNSILKAYALHGQAK 299 (589)
Q Consensus 225 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~ 299 (589)
|...+ +...++...+.+ +++......+...|...|++++|++++.+... .+...+..++..|.+.|+.+
T Consensus 80 -~~~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d 153 (310)
T 3mv2_B 80 -FLDTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVS 153 (310)
T ss_dssp -HHTTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHH
T ss_pred -Hhccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHH
Confidence 22322 566677666655 45566667888999999999999999998743 34567888899999999999
Q ss_pred HHHHHHHhC-CCCC-----CHHHHHHHHHHH--hccC--cHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHH
Q 043490 300 EALQLFSNM-NVQP-----DSATFVSLLSAC--SHAG--LVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEA 369 (589)
Q Consensus 300 ~A~~~~~~m-~~~p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 369 (589)
.|.+.+++| ...| +..+...+..++ ...| ++.+|..+|+++.++ .|+...-..++.++.+.|++++|
T Consensus 154 ~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eA 230 (310)
T 3mv2_B 154 TASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHH
Confidence 999999999 7788 356666666663 3334 899999999998654 34433344555589999999999
Q ss_pred HHHHHhC-CC----------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhH
Q 043490 370 EKLIREM-PM----------EPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLG 418 (589)
Q Consensus 370 ~~~~~~m-~~----------~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 418 (589)
.+.++.+ .. .|+ +.+...++......|+ .|.++++++.+..|+++.+
T Consensus 231 e~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 231 QGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 9999865 21 254 7777677766677787 8899999999999988754
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.77 E-value=2.9e-07 Score=81.04 Aligned_cols=155 Identities=12% Similarity=0.009 Sum_probs=101.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCc
Q 043490 254 ANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDSATFVSLLSACSHAGL 329 (589)
Q Consensus 254 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~~g~ 329 (589)
...+...+.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++. ...|+.. +..+...+.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~~~~~---- 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNS-YKSLIAKLE---- 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHH-HHHHHHHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChH-HHHHHHHHH----
Confidence 3445566677777777777777766 235566777777777777777777777777 5555332 221111000
Q ss_pred HHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043490 330 VQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATK 407 (589)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 407 (589)
+.+.+...+|...+++. ...| +...+..+...+...|++++|...+++
T Consensus 84 ------------------------------~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 133 (176)
T 2r5s_A 84 ------------------------------LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWN 133 (176)
T ss_dssp ------------------------------HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------------------HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 00000111233444433 2245 477888888889999999999999999
Q ss_pred HhhcCCCC--hhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 408 LKQLEPGD--SLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 408 ~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
+++.+|.. ...+..++.+|...|+.++|...+++..
T Consensus 134 ~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 134 ILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 99988754 5588889999999999999998887654
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.77 E-value=1.1e-07 Score=103.01 Aligned_cols=186 Identities=13% Similarity=0.086 Sum_probs=150.1
Q ss_pred hCcCcHHHHHHHHHHHH--------HhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHc
Q 043490 227 AGLVTERHASAVHSLIA--------KYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALH 295 (589)
Q Consensus 227 ~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 295 (589)
...|+.++|.+.++.++ +.. +.+...+..+...|.+.|++++|...|++.. ..+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999998 432 5667889999999999999999999999887 45778999999999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHH
Q 043490 296 GQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKL 372 (589)
Q Consensus 296 g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 372 (589)
|++++|++.|++. ...|+ ...+..+..++...|++++ .+.|+...+. .| +...|..+..+|.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999 77774 5688889999999999999 9999988754 45 556889999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHHcCC-----HHHHHHHHHHHhhcCCCChh
Q 043490 373 IREM-PMEPD-SVIWSVLLGSCRKHGE-----TRLAELAATKLKQLEPGDSL 417 (589)
Q Consensus 373 ~~~m-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 417 (589)
|++. ...|+ ...|..+..++...++ .+...++.+.+.++.+.++.
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 9998 67787 6778778888766555 34444555555555544433
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.75 E-value=7e-08 Score=102.44 Aligned_cols=157 Identities=13% Similarity=0.075 Sum_probs=123.9
Q ss_pred cCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 043490 264 CGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFH 338 (589)
Q Consensus 264 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 338 (589)
.|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++. ...|+ ...+..+..++...|++++|.+.++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 478899999999887 345678999999999999999999999999 77775 5688889999999999999999999
Q ss_pred HhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHhhcC
Q 043490 339 SMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKH---GETRLAELAATKLKQLE 412 (589)
Q Consensus 339 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 412 (589)
+..+. .| +...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.+
T Consensus 82 ~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 82 QASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 98764 34 4668889999999999999999999988 4445 478899999999999 99999999999999999
Q ss_pred CCChhHHHHHH
Q 043490 413 PGDSLGFVQMS 423 (589)
Q Consensus 413 p~~~~~~~~l~ 423 (589)
|.+...+..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 98888877665
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.72 E-value=2.2e-07 Score=84.40 Aligned_cols=123 Identities=11% Similarity=0.046 Sum_probs=88.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcC
Q 043490 288 ILKAYALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVG 364 (589)
Q Consensus 288 li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 364 (589)
+...|.+.|++++|+..|++. ...|+ ...+..+..++...|++++|.+.|+..++. .| +...+..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHh
Confidence 777788888888888888888 66664 567778888888888888888888887653 45 4557777777776554
Q ss_pred C--HHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 043490 365 R--ILEAEKLIREMPMEPD--SVIWSVLLGSCRKHGETRLAELAATKLKQLEPG 414 (589)
Q Consensus 365 ~--~~~A~~~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 414 (589)
. .+.+...++... .|+ ...|..+..++...|++++|+..+++++++.|+
T Consensus 137 ~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 137 EQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3 445566666652 344 334444566677788999999999999999994
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.71 E-value=2.1e-07 Score=90.21 Aligned_cols=217 Identities=10% Similarity=-0.027 Sum_probs=151.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 043490 193 KMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQ 272 (589)
Q Consensus 193 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 272 (589)
..|++++|.+++++..+... .. + +...++++.|...+..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 35778899999888765321 11 0 11146777777776654 456777888888888
Q ss_pred HHhhcCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-----CCC--HHHHHHHHHHHhccCcHHHHHH
Q 043490 273 VFDKMTY-----HD----LVSWNSILKAYALHGQAKEALQLFSNM-NV-----QPD--SATFVSLLSACSHAGLVQEGNK 335 (589)
Q Consensus 273 ~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-----~p~--~~t~~~ll~a~~~~g~~~~a~~ 335 (589)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++. .+ .|. ..++..+...+.. |++++|.+
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8877651 12 347888888899999999999888877 11 122 3567788888888 99999999
Q ss_pred HHHHhHHhcCCcc----CcchHHHHHHHHhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCHHHHHH
Q 043490 336 VFHSMLENHGVVP----QLDHYACMVDLLGRVGRILEAEKLIREM-PM---EPD----SVIWSVLLGSCRKHGETRLAEL 403 (589)
Q Consensus 336 ~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~ 403 (589)
.|+...+-..-.. ...++..+...|.+.|++++|++.|++. .+ .++ ...+..+...+...|+++.|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9988765321111 1356788899999999999999999887 11 122 2366677777888899999999
Q ss_pred HHHHHhhcCCCChhH-----HHHHHHHhhhcCChHHHHH
Q 043490 404 AATKLKQLEPGDSLG-----FVQMSNIYCLSGSFNKARL 437 (589)
Q Consensus 404 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 437 (589)
.+++.. +.|....+ ...++.+| ..|+.+.+..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 88854332 34555555 5677766655
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.71 E-value=2.8e-08 Score=85.07 Aligned_cols=122 Identities=11% Similarity=-0.050 Sum_probs=101.7
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC
Q 043490 320 LLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHG 396 (589)
Q Consensus 320 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g 396 (589)
|...+...|++++|...++... ...| +...+..+...|.+.|++++|++.|++. .+.|+ ..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445566789999999988764 3344 3456778899999999999999999988 55664 889999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHH-HHHHhc
Q 043490 397 ETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLI-RKEMKG 444 (589)
Q Consensus 397 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 444 (589)
++++|+..++++++++|.++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 466654
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.70 E-value=4.2e-07 Score=82.49 Aligned_cols=174 Identities=13% Similarity=0.056 Sum_probs=97.6
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWC-TFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLS 270 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 270 (589)
.+.|++++|+..|++.... .|+.. .+.. . .... .........+.+...|.+.|++++|
T Consensus 15 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~-~~~~-----------------~~~~~~~~~~~lg~~~~~~g~~~~A 73 (208)
T 3urz_A 15 IEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T-NVDK-----------------NSEISSKLATELALAYKKNRNYDKA 73 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H-HSCT-----------------TSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h-hhcc-----------------hhhhhHHHHHHHHHHHHHCCCHHHH
Confidence 7889999999999998874 34432 2222 0 0000 0011122334466667777777777
Q ss_pred HHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCc--HHHHHHHHHHhHHh
Q 043490 271 KQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGL--VQEGNKVFHSMLEN 343 (589)
Q Consensus 271 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~ 343 (589)
...|++.. ..+...|..+...|...|++++|+..|++. .+.|+ ..++..+..++...|. .+.+...+....
T Consensus 74 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-- 151 (208)
T 3urz_A 74 YLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-- 151 (208)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh--
Confidence 77776655 335566777777777777777777777777 55554 4456666655544433 233344443332
Q ss_pred cCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 043490 344 HGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPDSVIWSVLL 389 (589)
Q Consensus 344 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 389 (589)
...|....+..+..++...|++++|...|++. ...|+......+.
T Consensus 152 -~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 152 -SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred -CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 11222222333444555667777777777766 5667755544443
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.70 E-value=2e-07 Score=98.87 Aligned_cols=144 Identities=12% Similarity=0.043 Sum_probs=97.8
Q ss_pred cCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHH
Q 043490 229 LVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLF 305 (589)
Q Consensus 229 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 305 (589)
.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467788888888877664 5567788888888888888888888888765 235667888888888888888888888
Q ss_pred HhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhc---CCHHHHHHHHHhC
Q 043490 306 SNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRV---GRILEAEKLIREM 376 (589)
Q Consensus 306 ~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~m 376 (589)
++. ...|+ ...+..+..++...|++++|.+.++...+. .| +...+..+...|... |+.++|.+.+++.
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 888 55564 567778888888888888888888887654 33 455777788888888 8888888888776
No 107
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.67 E-value=8.2e-08 Score=82.00 Aligned_cols=97 Identities=14% Similarity=-0.049 Sum_probs=83.2
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhh
Q 043490 350 LDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYC 427 (589)
Q Consensus 350 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 427 (589)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++.+++|+++.+|..+..+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 445666777778888888888888877 4455 48889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHhcCC
Q 043490 428 LSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 428 ~~g~~~~a~~~~~~m~~~~ 446 (589)
+.|++++|...|++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999887643
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.66 E-value=6.7e-07 Score=85.69 Aligned_cols=157 Identities=10% Similarity=0.014 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHH-HHHHHH
Q 043490 217 CTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTY--HDLVSWNS-ILKAYA 293 (589)
Q Consensus 217 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~ 293 (589)
..+..+...+...|++++|...++.+++.. +.+...+..+...|.+.|++++|...|+++.. |+...... ....+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 344445555556666666666666666554 44555566666666666666666666666552 33222111 122244
Q ss_pred HcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHH
Q 043490 294 LHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEK 371 (589)
Q Consensus 294 ~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 371 (589)
..++.++|+..|++. ...|+ ...+..+..++...|++++|...|..+++...-..+...+..++..|...|+.++|..
T Consensus 197 ~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 445555555555555 44443 3445555555555555555555555554431111113344455555555555555444
Q ss_pred HHH
Q 043490 372 LIR 374 (589)
Q Consensus 372 ~~~ 374 (589)
.++
T Consensus 277 ~~r 279 (287)
T 3qou_A 277 XYR 279 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 109
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.65 E-value=5.9e-05 Score=77.89 Aligned_cols=208 Identities=10% Similarity=0.011 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 043490 198 EEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKM 277 (589)
Q Consensus 198 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 277 (589)
+++..+|+++.... +-+...|...+.-+.+.|+.+.|..+++..++. |.+...+.. |+...+.++. ++.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~- 264 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGD- 264 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHH-
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHH-
Confidence 44566777776642 344556666666666777888888888888777 444433322 2221111111 111
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcch
Q 043490 278 TYHDLVSWNSILKAYALHGQAKEALQLFSNM--NVQP---DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDH 352 (589)
Q Consensus 278 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 352 (589)
+...+. .++.- +..+ ....|...+....+.+..+.|+++|+.. +..+ .+...
T Consensus 265 ----------l~~~~~----------~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v 321 (493)
T 2uy1_A 265 ----------LKRKYS----------MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHV 321 (493)
T ss_dssp ----------HHHHTC--------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHH
T ss_pred ----------HHHHHH----------hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHH
Confidence 111100 00000 0001 1133445555555556677777777665 2211 12223
Q ss_pred HHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhc
Q 043490 353 YACMVDLLGRVG-RILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLS 429 (589)
Q Consensus 353 ~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 429 (589)
|.....+-.+.+ +.+.|..+|+.. ..-| +...|...+.-....|+.+.|..+|+++. .....|...+..-...
T Consensus 322 ~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~ 397 (493)
T 2uy1_A 322 FIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMV 397 (493)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHC
Confidence 332222222223 577777777665 1112 24445556666666777777777777762 2445566666666666
Q ss_pred CChHHHHHHHHHHh
Q 043490 430 GSFNKARLIRKEMK 443 (589)
Q Consensus 430 g~~~~a~~~~~~m~ 443 (589)
|+.+.+.++++++.
T Consensus 398 G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 398 GSMELFRELVDQKM 411 (493)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 77777777776655
No 110
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=2.5e-07 Score=88.35 Aligned_cols=190 Identities=9% Similarity=-0.041 Sum_probs=128.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 043490 250 DTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPD-SATFVSLLSAC 324 (589)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~ 324 (589)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++. ...|+ ...+..+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45566677777888888888888887765 336677888888888888888888888888 66664 45777788888
Q ss_pred hccCcHHHHHHHHHHhHHhcCCccC-cchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043490 325 SHAGLVQEGNKVFHSMLENHGVVPQ-LDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAEL 403 (589)
Q Consensus 325 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~ 403 (589)
...|++++|.+.|+...+. .|+ ...+...+....+......... .......++......+ ..+ ..|+.++|.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHH
Confidence 8888999998888877543 232 1122222222222222222222 1222223344443333 223 2688899999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHhhhc-CChHHHHHHHHHHhcC
Q 043490 404 AATKLKQLEPGDSLGFVQMSNIYCLS-GSFNKARLIRKEMKGS 445 (589)
Q Consensus 404 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 445 (589)
.++++.+.+|++......+...+.+. +.+++|.++|.+..+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999998877777777777776 7789999999988753
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.64 E-value=8.5e-07 Score=81.56 Aligned_cols=183 Identities=13% Similarity=0.010 Sum_probs=131.1
Q ss_pred CHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCC-C-cHHHHHHHHHHHHhcCCHHHHHHHHhhcC--CCC-h---hHHH
Q 043490 215 DWCTFSIVLKACAGLVTERHASAVHSLIAKYGFE-D-DTVIANALIHAYARCGSISLSKQVFDKMT--YHD-L---VSWN 286 (589)
Q Consensus 215 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~-~---~~~~ 286 (589)
+...+..+...+...|++++|...++.+++..-. + ....+..+...|.+.|++++|...|++.. .|+ . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445556667788999999999999999986421 1 24577888999999999999999999986 232 2 2455
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 043490 287 SILKAYAL------------------HGQAKEALQLFSNM-NVQPDSA-TFVSLLSACSHAGLVQEGNKVFHSMLENHGV 346 (589)
Q Consensus 287 ~li~~~~~------------------~g~~~~A~~~~~~m-~~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 346 (589)
.+..++.. .|+.++|+..|+++ ...|+.. ........ ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l----------~~~~~~~~----- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL----------VFLKDRLA----- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH----------HHHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH----------HHHHHHHH-----
Confidence 55555554 57899999999999 7778754 22211110 01111110
Q ss_pred ccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh
Q 043490 347 VPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD----SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDS 416 (589)
Q Consensus 347 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 416 (589)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|...++.+....|++.
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 01234567888999999999999987 33343 35788899999999999999999999998888654
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=3.3e-07 Score=75.68 Aligned_cols=113 Identities=11% Similarity=0.023 Sum_probs=76.0
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHH
Q 043490 310 VQPDS-ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIW 385 (589)
Q Consensus 310 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~ 385 (589)
+.|+. ..+......+.+.|++++|.+.|+..++. .| +...|..+..+|.+.|++++|++.|++. .+.|+ ...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 44443 35566666777777777777777766543 33 4556666777777777777777777666 33443 6677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 043490 386 SVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNI 425 (589)
Q Consensus 386 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 425 (589)
..+..++...|++++|+..|+++++++|.+..++..|.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 7777777777777777777777777777777666665543
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.62 E-value=1.2e-06 Score=79.63 Aligned_cols=160 Identities=9% Similarity=-0.063 Sum_probs=108.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhHHhcCCccCcchHHH
Q 043490 281 DLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDSATFVSLLSACSHAG----LVQEGNKVFHSMLENHGVVPQLDHYAC 355 (589)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~~~ 355 (589)
++.++..+...|...+++++|++.|++. .. -+...+..|...+.. + +.++|.++|+...+. -+...+..
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~~~ 90 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGEIV 90 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHHHH
Confidence 4444444555555555555555555555 11 134455555555555 4 677777777766432 24456666
Q ss_pred HHHHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 043490 356 MVDLLGR----VGRILEAEKLIREM-PMEPD---SVIWSVLLGSCRK----HGETRLAELAATKLKQLEPGDSLGFVQMS 423 (589)
Q Consensus 356 li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 423 (589)
|..+|.. .+++++|++.|++. ...|+ ...+..|...|.. .++.++|...+++..+. |.++.++..|.
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg 169 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAG 169 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 6677766 77888888888877 43443 7788888888888 78899999999999887 55677888898
Q ss_pred HHhhhc-C-----ChHHHHHHHHHHhcCCC
Q 043490 424 NIYCLS-G-----SFNKARLIRKEMKGSRV 447 (589)
Q Consensus 424 ~~~~~~-g-----~~~~a~~~~~~m~~~~~ 447 (589)
.+|... | ++++|...+++..+.|.
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888764 3 89999999998877664
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.62 E-value=3.2e-06 Score=80.96 Aligned_cols=208 Identities=13% Similarity=0.145 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHhhcC---CCChhHHHHHHHHH----HHc---CCHHHH
Q 043490 234 HASAVHSLIAKYGFEDDTVIANALIHAYARCG--SISLSKQVFDKMT---YHDLVSWNSILKAY----ALH---GQAKEA 301 (589)
Q Consensus 234 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~~A 301 (589)
+|.+..+.++... +.+..+|+.--..+...| +++++++.++.+. ..+..+|+.--..+ ... ++++++
T Consensus 51 ~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 51 RALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 4444444444443 334444444444444444 5555555555544 22334444433333 333 455556
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHhccCcHH--HHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCC------HHHHHH
Q 043490 302 LQLFSNM-NVQP-DSATFVSLLSACSHAGLVQ--EGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGR------ILEAEK 371 (589)
Q Consensus 302 ~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~ 371 (589)
+++++++ ...| |..+|..-...+.+.|.++ ++.+.++.+.+.. .-|-..|+.-...+.+.|+ ++++++
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~ 207 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDEELN 207 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHHHHH
Confidence 6655555 3334 3445554444444455554 5555555555431 1133344433344444444 566666
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHcCCHH-HHHHHHHHHhhcC---CCChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 372 LIREM-PMEP-DSVIWSVLLGSCRKHGETR-LAELAATKLKQLE---PGDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 372 ~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
.++++ ...| |...|+.+-..+.+.|+.. ....+.+++.+++ |.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 208 ~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 208 YVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 66555 2233 4666766666666666533 3444555555544 56666777777777777777777777777654
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.61 E-value=6.7e-07 Score=81.21 Aligned_cols=125 Identities=10% Similarity=-0.041 Sum_probs=93.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 043490 318 VSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKH 395 (589)
Q Consensus 318 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 395 (589)
..+...+...|++++|.+.|+.. +.|+...+..+...|.+.|++++|.+.+++. ...| +...|..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 34444555666666666666543 2445556666666666777777777766665 2234 477888888899999
Q ss_pred CCHHHHHHHHHHHhhcCCCCh----------------hHHHHHHHHhhhcCChHHHHHHHHHHhcCCC
Q 043490 396 GETRLAELAATKLKQLEPGDS----------------LGFVQMSNIYCLSGSFNKARLIRKEMKGSRV 447 (589)
Q Consensus 396 g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 447 (589)
|++++|...++++.+..|.+. .++..++.+|.+.|++++|...+++..+...
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999999887766 8899999999999999999999999887543
No 116
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.61 E-value=1.2e-07 Score=80.93 Aligned_cols=97 Identities=11% Similarity=0.015 Sum_probs=83.4
Q ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHh
Q 043490 349 QLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIY 426 (589)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 426 (589)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445666777888888888888888877 3345 5888889999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHhcC
Q 043490 427 CLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 427 ~~~g~~~~a~~~~~~m~~~ 445 (589)
...|++++|...|++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.60 E-value=4.8e-06 Score=79.95 Aligned_cols=156 Identities=6% Similarity=-0.103 Sum_probs=112.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCC---CCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCc----chHHH
Q 043490 288 ILKAYALHGQAKEALQLFSNM-NVQ---PDSA----TFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQL----DHYAC 355 (589)
Q Consensus 288 li~~~~~~g~~~~A~~~~~~m-~~~---p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~ 355 (589)
.+..+...|++++|.+++++. ... |+.. .+..+...+...|++++|.+.|+...+...-.++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356677788888888888887 322 2221 23345566667778888888888876532212222 25788
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-----C--CC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC------ChhHHH
Q 043490 356 MVDLLGRVGRILEAEKLIREM-----P--ME-PD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPG------DSLGFV 420 (589)
Q Consensus 356 li~~~~~~g~~~~A~~~~~~m-----~--~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~ 420 (589)
+...|...|++++|+..|+++ . .. |. ..++..+...|.+.|++++|...+++++++.+. -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888889988888888776 1 11 22 447888999999999999999999998875432 256789
Q ss_pred HHHHHhhhcCC-hHHHHHHHHHHh
Q 043490 421 QMSNIYCLSGS-FNKARLIRKEMK 443 (589)
Q Consensus 421 ~l~~~~~~~g~-~~~a~~~~~~m~ 443 (589)
.++.+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999888764
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.60 E-value=1.7e-05 Score=75.91 Aligned_cols=227 Identities=11% Similarity=0.027 Sum_probs=177.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCcC--cHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH----Hhc
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDW-CTFSIVLKACAGLV--TERHASAVHSLIAKYGFEDDTVIANALIHAY----ARC 264 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~----~~~ 264 (589)
.+....++|++++.+++.. .|+. ..|+.--..+...+ +++++.+.++.++... +.+..+|+.-...+ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 4445567999999999885 4554 45666666677777 9999999999999886 66667777555555 555
Q ss_pred ---CCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHH--HHHHHHHhC-CCCC-CHHHHHHHHHHHhccCc-----
Q 043490 265 ---GSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAK--EALQLFSNM-NVQP-DSATFVSLLSACSHAGL----- 329 (589)
Q Consensus 265 ---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~----- 329 (589)
+++++++.+++++. .+|..+|+.-.-.+.+.|.++ ++++.++++ ...| |...|+.-.....+.+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhh
Confidence 78999999999987 567789998888888889888 999999999 6666 56677777666777776
Q ss_pred -HHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCCHHHH
Q 043490 330 -VQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILE-AEKLIREM-PM----EPDSVIWSVLLGSCRKHGETRLA 401 (589)
Q Consensus 330 -~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a 401 (589)
++++.+.+..++.. .| |...|+.+-..+.+.|+..+ +.++..+. .. ..+...+..+...+.+.|+.++|
T Consensus 201 ~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 201 TIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 89999999888754 44 67788888888888888544 55677766 22 23688999999999999999999
Q ss_pred HHHHHHHhh-cCCCChhHHHHHHH
Q 043490 402 ELAATKLKQ-LEPGDSLGFVQMSN 424 (589)
Q Consensus 402 ~~~~~~~~~-~~p~~~~~~~~l~~ 424 (589)
.++++.+.+ .+|.....|...++
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHHHh
Confidence 999999986 79977666665443
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.56 E-value=2.9e-07 Score=76.01 Aligned_cols=100 Identities=13% Similarity=0.091 Sum_probs=89.3
Q ss_pred CccC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 043490 346 VVPQ-LDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQM 422 (589)
Q Consensus 346 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 422 (589)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3453 346777888999999999999999987 4455 588999999999999999999999999999999999999999
Q ss_pred HHHhhhcCChHHHHHHHHHHhcC
Q 043490 423 SNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 423 ~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
+.+|...|++++|.+.|++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.55 E-value=5.9e-07 Score=79.03 Aligned_cols=152 Identities=12% Similarity=0.071 Sum_probs=100.2
Q ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHH-HHHcC
Q 043490 220 SIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTY--HDLVSWNSILKA-YALHG 296 (589)
Q Consensus 220 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~~g 296 (589)
......+...|+++.|...++.+++.. |.+...+..+...|.+.|++++|...|++... |+...+..+... +...+
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhc
Confidence 344455677888888888888877654 56778888899999999999999999999873 333333222111 12222
Q ss_pred CHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccC---cchHHHHHHHHhhcCCHHHHHH
Q 043490 297 QAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQ---LDHYACMVDLLGRVGRILEAEK 371 (589)
Q Consensus 297 ~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~ 371 (589)
...+|+..|++. ...|+ ...+..+..++...|++++|...|+.+.+. .|+ ...+..+...|...|+.++|..
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV---NLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 333466777776 55564 556667777777777777777777776533 343 3356666666666777666666
Q ss_pred HHHh
Q 043490 372 LIRE 375 (589)
Q Consensus 372 ~~~~ 375 (589)
.|++
T Consensus 166 ~y~~ 169 (176)
T 2r5s_A 166 KYRR 169 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.53 E-value=2.6e-06 Score=77.23 Aligned_cols=143 Identities=10% Similarity=-0.061 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHH
Q 043490 254 ANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQ 331 (589)
Q Consensus 254 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~ 331 (589)
+..+...|...|++++|...|++...++...|..+...|...|++++|++.|++. ...| +...+..+..++...|+++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence 4455666777788888888887777777777777777777777777777777777 4444 3456666777777777777
Q ss_pred HHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 043490 332 EGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQ 410 (589)
Q Consensus 332 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 410 (589)
+|.+.|+...+. .|+..... +...| +...|+ ...|..+..++...|++++|...++++.+
T Consensus 89 ~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777766543 22111000 00000 012343 57788888999999999999999999999
Q ss_pred cCCCC
Q 043490 411 LEPGD 415 (589)
Q Consensus 411 ~~p~~ 415 (589)
..|.+
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 99865
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.52 E-value=3.1e-06 Score=81.29 Aligned_cols=159 Identities=6% Similarity=-0.088 Sum_probs=103.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CH------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccC----cch
Q 043490 285 WNSILKAYALHGQAKEALQLFSNM-NVQP-DS------ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQ----LDH 352 (589)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 352 (589)
+...+..+...|++++|++.+++. ...| +. ..+..+...+...|++++|.+.++...+...-..+ ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334455566666666666666655 2222 11 12233444556667777777777766532111111 236
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC------Chh
Q 043490 353 YACMVDLLGRVGRILEAEKLIREM-------PMEPD--SVIWSVLLGSCRKHGETRLAELAATKLKQLEPG------DSL 417 (589)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 417 (589)
|+.+...|...|++++|...|++. +..+. ..++..+...|...|++++|...+++++++.+. -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 667777777788887777777665 21111 257888888999999999999999998765421 156
Q ss_pred HHHHHHHHhhhcCChHHH-HHHHHHHh
Q 043490 418 GFVQMSNIYCLSGSFNKA-RLIRKEMK 443 (589)
Q Consensus 418 ~~~~l~~~~~~~g~~~~a-~~~~~~m~ 443 (589)
+|..++.+|.+.|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 788999999999999999 77677654
No 123
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.51 E-value=5.9e-06 Score=75.07 Aligned_cols=135 Identities=12% Similarity=0.016 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC----CHHHHHHHH
Q 043490 199 EALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCG----SISLSKQVF 274 (589)
Q Consensus 199 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 274 (589)
+|++.|++..+.| +...+..+-..+...++.++|...+....+.| +...+..|..+|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 44555555555555666666666666666654 44555556666655 4 566666666
Q ss_pred hhcC-CCChhHHHHHHHHHHH----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHhc----cCcHHHHHHHHHHh
Q 043490 275 DKMT-YHDLVSWNSILKAYAL----HGQAKEALQLFSNM-NVQPD---SATFVSLLSACSH----AGLVQEGNKVFHSM 340 (589)
Q Consensus 275 ~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~t~~~ll~a~~~----~g~~~~a~~~~~~~ 340 (589)
++.. ..+..++..|...|.. .++.++|++.|++. ...|. ..++..|...|.. .++.++|.++|+..
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 6554 2344455555555544 45555555555555 33332 3444444444444 44455555555444
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.50 E-value=1.3e-06 Score=75.48 Aligned_cols=126 Identities=12% Similarity=-0.027 Sum_probs=96.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 043490 316 TFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCR 393 (589)
Q Consensus 316 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 393 (589)
.+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|.+.+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45556666777778888888777765431 224566777777888888888888888776 3334 4778888999999
Q ss_pred HcCCHHHHHHHHHHHhhcCCCChhHHHHH--HHHhhhcCChHHHHHHHHHHh
Q 043490 394 KHGETRLAELAATKLKQLEPGDSLGFVQM--SNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 394 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~ 443 (589)
..|++++|...++++.+..|.+...+..+ +..+.+.|++++|.+.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999999999999888877544 444888899999999988764
No 125
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.49 E-value=6.8e-07 Score=83.69 Aligned_cols=135 Identities=13% Similarity=-0.035 Sum_probs=98.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccC--cchHHHHHHHHh
Q 043490 285 WNSILKAYALHGQAKEALQLFSNM-NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQ--LDHYACMVDLLG 361 (589)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~ 361 (589)
+-.....+...|++++|.++|+.+ ...|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHH
Confidence 344567778888899999998888 55676555555556778888999998888754211 1 111 235677788888
Q ss_pred hcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 043490 362 RVGRILEAEKLIREM---PMEPD--SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQM 422 (589)
Q Consensus 362 ~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 422 (589)
+.|++++|++.|++. +..|. ...+.....++.+.|+.++|...|+++...+|. ...+..|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 899999999999887 22253 346677788889999999999999999999996 5554444
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.48 E-value=2.9e-06 Score=68.98 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 043490 315 ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSC 392 (589)
Q Consensus 315 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 392 (589)
.++..+...+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|...++++ ...| +..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 456666677777777777777777775432 224556677777777888888888877776 2233 577888888888
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcC
Q 043490 393 RKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSG 430 (589)
Q Consensus 393 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 430 (589)
...|++++|...++++.+..|.++..+..+..++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999988888888888877776544
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.47 E-value=1.1e-06 Score=74.26 Aligned_cols=95 Identities=9% Similarity=-0.017 Sum_probs=78.9
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhh
Q 043490 351 DHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCL 428 (589)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 428 (589)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|.++..+..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34555666677778888888877776 3345 578888889999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHhcC
Q 043490 429 SGSFNKARLIRKEMKGS 445 (589)
Q Consensus 429 ~g~~~~a~~~~~~m~~~ 445 (589)
.|++++|.+.+++..+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999987654
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.46 E-value=8.1e-07 Score=87.23 Aligned_cols=93 Identities=11% Similarity=-0.056 Sum_probs=80.8
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhh
Q 043490 351 DHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCL 428 (589)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 428 (589)
..|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++++|.+..++..+..++.+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 57778888888889999998888887 4445 488899999999999999999999999999999999999999999999
Q ss_pred cCChHHH-HHHHHHHh
Q 043490 429 SGSFNKA-RLIRKEMK 443 (589)
Q Consensus 429 ~g~~~~a-~~~~~~m~ 443 (589)
.|++++| ...++.|.
T Consensus 277 ~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 277 IRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998 44666554
No 129
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.46 E-value=9.6e-06 Score=83.78 Aligned_cols=204 Identities=11% Similarity=-0.061 Sum_probs=127.9
Q ss_pred cHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC--C-----HHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHH
Q 043490 231 TERHASAVHSLIAKYGFEDDTVIANALIHAYARCG--S-----ISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKE 300 (589)
Q Consensus 231 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 300 (589)
.+..|+.++..+...--..+...|...++.--..+ - .+.+..+|+++. ..+...|-..+.-+.+.|+.++
T Consensus 152 ~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 152 IFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34445555555443210113345655555432221 1 344667788766 3456788888888899999999
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC--------C---ccCcchHHHHHHHHhhcCCHHH
Q 043490 301 ALQLFSNM-NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHG--------V---VPQLDHYACMVDLLGRVGRILE 368 (589)
Q Consensus 301 A~~~~~~m-~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--------~---~p~~~~~~~li~~~~~~g~~~~ 368 (589)
|..+|++. +. |....+......+...+. +++.+.+.+- . .....+|...+..+.+.+.++.
T Consensus 232 ar~i~erAi~~-P~~~~l~~~y~~~~e~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~ 304 (493)
T 2uy1_A 232 AKKVVERGIEM-SDGMFLSLYYGLVMDEEA------VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLEL 304 (493)
T ss_dssp HHHHHHHHHHH-CCSSHHHHHHHHHTTCTH------HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHhhcchhH------HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHH
Confidence 99999999 66 776543322211112121 1233322210 0 0112456666777778889999
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHH
Q 043490 369 AEKLIREMPMEP--DSVIWSVLLGSCRK-HGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEM 442 (589)
Q Consensus 369 A~~~~~~m~~~p--~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 442 (589)
|..+|++.. .| +...|......-.. .++.+.|..+|+.+.+..|+++..+...++...+.|+.+.|+.+|++.
T Consensus 305 AR~i~~~A~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 305 FRKLFIELG-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHT-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHhh-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999882 23 34455432222222 346999999999999988887777777888888999999999999997
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.44 E-value=1.7e-06 Score=71.06 Aligned_cols=117 Identities=8% Similarity=-0.034 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 043490 314 SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGS 391 (589)
Q Consensus 314 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 391 (589)
...+..+...+...|++++|.+.++...+.. +.+...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 3456666667777777888887777765432 224556777777778888888888887776 3334 47788888889
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCCh
Q 043490 392 CRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSF 432 (589)
Q Consensus 392 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 432 (589)
+...|++++|...++++.+..|.+...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998888888999988888775
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.44 E-value=4.9e-06 Score=79.86 Aligned_cols=160 Identities=9% Similarity=-0.078 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch------hHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-----CC--H
Q 043490 252 VIANALIHAYARCGSISLSKQVFDKMTY--H-DL------VSWNSILKAYALHGQAKEALQLFSNM-NVQ-----PD--S 314 (589)
Q Consensus 252 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-----p~--~ 314 (589)
..+...+..+...|++++|.+.++...+ + .. ..+..+...+...|++++|+..|++. ... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455667788899999999998876541 1 11 22344556677889999999999887 221 22 3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccC-----cchHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-
Q 043490 315 ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQ-----LDHYACMVDLLGRVGRILEAEKLIREM-------PMEPD- 381 (589)
Q Consensus 315 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~- 381 (589)
.+++.+...|...|++++|..+|+...+.....|+ ..++..+...|.+.|++++|++.+++. +....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888899999999999999999988632222232 257888899999999999999999876 11111
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHhhc
Q 043490 382 SVIWSVLLGSCRKHGETRLA-ELAATKLKQL 411 (589)
Q Consensus 382 ~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 411 (589)
..+|..+...|...|++++| ...++++..+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 67888899999999999999 7778887653
No 132
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.43 E-value=7.6e-07 Score=86.26 Aligned_cols=193 Identities=9% Similarity=-0.028 Sum_probs=147.6
Q ss_pred CcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-cCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 043490 228 GLVTERHASAVHSLIAKYGFEDDTVIANALIHAYAR-CGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFS 306 (589)
Q Consensus 228 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 306 (589)
..|++++|.+++++..+.. +.. +.+ .++++.|...|.+. ...|...|++++|.+.|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHH
Confidence 4578889999998887653 111 122 58899998888764 567889999999999999
Q ss_pred hC-CC-----CC-C-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--cc--CcchHHHHHHHHhhcCCHHHHHHHHH
Q 043490 307 NM-NV-----QP-D-SATFVSLLSACSHAGLVQEGNKVFHSMLENHGV--VP--QLDHYACMVDLLGRVGRILEAEKLIR 374 (589)
Q Consensus 307 ~m-~~-----~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~ 374 (589)
+. .+ .| . ..+|..+...|...|++++|...|+...+-+.- .| ...++..+...|.+ |++++|++.|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 88 21 11 1 347888889999999999999999887543211 11 13567888889988 99999999998
Q ss_pred hC-CCCC---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC------hhHHHHHHHHhhhcCChHHHHHHHH
Q 043490 375 EM-PMEP---D----SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGD------SLGFVQMSNIYCLSGSFNKARLIRK 440 (589)
Q Consensus 375 ~m-~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~ 440 (589)
+. .+.| + ..++..+...+...|++++|+..+++++++.|.+ ...+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77 1111 1 4678889999999999999999999999876533 2356778888999999999999999
Q ss_pred HHh
Q 043490 441 EMK 443 (589)
Q Consensus 441 ~m~ 443 (589)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 887
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.42 E-value=1.7e-06 Score=71.53 Aligned_cols=114 Identities=11% Similarity=0.001 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 043490 315 ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGS 391 (589)
Q Consensus 315 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 391 (589)
..+..+...+...|++++|.+.|+...+. .| +...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45555555566666666666666655422 23 3445556666666666666666666655 2233 46777888888
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCC
Q 043490 392 CRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGS 431 (589)
Q Consensus 392 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 431 (589)
+...|++++|...++++.+..|.+...+..+..++.+.|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888887888888888776653
No 134
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.40 E-value=3.7e-06 Score=66.88 Aligned_cols=99 Identities=12% Similarity=0.050 Sum_probs=85.6
Q ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC--ChhHHHHHHH
Q 043490 349 QLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPG--DSLGFVQMSN 424 (589)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 424 (589)
+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4556777888888899999999988877 3334 5788889999999999999999999999999998 8999999999
Q ss_pred Hhhhc-CChHHHHHHHHHHhcCCC
Q 043490 425 IYCLS-GSFNKARLIRKEMKGSRV 447 (589)
Q Consensus 425 ~~~~~-g~~~~a~~~~~~m~~~~~ 447 (589)
+|.+. |++++|.+.+++..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999887554
No 135
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.40 E-value=2.9e-07 Score=82.78 Aligned_cols=96 Identities=10% Similarity=-0.106 Sum_probs=71.9
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhh
Q 043490 351 DHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCL 428 (589)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 428 (589)
..+..+..+|.+.|++++|+..+++. ...| +...|..+..++...|+++.|...++++++++|.+..++..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 46667777888888888888888877 3344 478888999999999999999999999999999999999999999988
Q ss_pred cCChHHHH-HHHHHHhcCC
Q 043490 429 SGSFNKAR-LIRKEMKGSR 446 (589)
Q Consensus 429 ~g~~~~a~-~~~~~m~~~~ 446 (589)
.|+.+++. ..+..|...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 88877776 5555554433
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.38 E-value=4.6e-06 Score=78.06 Aligned_cols=181 Identities=9% Similarity=-0.048 Sum_probs=134.6
Q ss_pred hcCCHHHHHHHHhhcC---CCChhHHHHH-------HHHHHHcCCHHHHHHHHHhC-CCCCCHH----------------
Q 043490 263 RCGSISLSKQVFDKMT---YHDLVSWNSI-------LKAYALHGQAKEALQLFSNM-NVQPDSA---------------- 315 (589)
Q Consensus 263 ~~g~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m-~~~p~~~---------------- 315 (589)
..++.+.|.+.|.+.. ......|+.+ ...+...++..+++..+++- ++.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 4678888888888776 2344677777 45566656666666666666 6555321
Q ss_pred ------HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCC----HHHH
Q 043490 316 ------TFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPMEPD----SVIW 385 (589)
Q Consensus 316 ------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~----~~~~ 385 (589)
....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+ ...+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~ 174 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAG 174 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHH
Confidence 223456677889999999999987743 235333666667789999999999999997743343 2467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcC--CC-ChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 386 SVLLGSCRKHGETRLAELAATKLKQLE--PG-DSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 386 ~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
..+..++...|++++|+..|++..... |. .+.....+..++.+.|+.++|..+|+++...+
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 788899999999999999999998543 43 34577889999999999999999999998643
No 137
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.37 E-value=1.3e-06 Score=71.38 Aligned_cols=96 Identities=16% Similarity=0.077 Sum_probs=84.5
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhh
Q 043490 351 DHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCL 428 (589)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 428 (589)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|.++.++..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34566777888999999999999888 4456 588999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHhcCC
Q 043490 429 SGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 429 ~g~~~~a~~~~~~m~~~~ 446 (589)
.|++++|...+++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999987654
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.36 E-value=1.4e-06 Score=74.25 Aligned_cols=104 Identities=10% Similarity=-0.023 Sum_probs=76.0
Q ss_pred CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHH
Q 043490 309 NVQPDS-ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVI 384 (589)
Q Consensus 309 ~~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~ 384 (589)
.+.|+. ..+..+...+.+.|++++|...|+...+. .| +...|..+..+|.+.|++++|++.|++. .+.|+ ...
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~ 106 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH
Confidence 555643 35666666777777777777777777643 34 4556777777777888888888877777 44454 677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 043490 385 WSVLLGSCRKHGETRLAELAATKLKQLEPGD 415 (589)
Q Consensus 385 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 415 (589)
|..+..++...|++++|...|++++++.|++
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 8888888888888888888888888888754
No 139
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.35 E-value=8.7e-05 Score=71.00 Aligned_cols=199 Identities=8% Similarity=-0.072 Sum_probs=136.4
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHH---HHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 043490 204 FRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVI---ANALIHAYARCGSISLSKQVFDKMTYH 280 (589)
Q Consensus 204 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~ 280 (589)
+.++......|+..++..+...+.-.-+ .+.......+... +...+..+.+.|++++|...+++..+.
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 3334333356777777777766643221 1111111222222 233467788999999999999986532
Q ss_pred ---Ch-----h-HHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 043490 281 ---DL-----V-SWNSILKAYALHGQAKEALQLFSNM-NV---QPD----SATFVSLLSACSHAGLVQEGNKVFHSMLEN 343 (589)
Q Consensus 281 ---~~-----~-~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 343 (589)
+. . .+..+...+...|++++|+..|++. .. .++ ..+++.+..+|...|++++|..+|+.+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 1 2334666677788999999999998 21 223 236888999999999999999999988742
Q ss_pred c----CCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCC-HHHHHHHHHHHh
Q 043490 344 H----GVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-------PMEPD-SVIWSVLLGSCRKHGE-TRLAELAATKLK 409 (589)
Q Consensus 344 ~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~-~~~a~~~~~~~~ 409 (589)
. +..+ ...++..+...|.+.|++++|.+.+++. +..+. ..+|..+..++...|+ +++|...++++.
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 2 1112 2237888999999999999999999876 22233 6788999999999995 699999999887
Q ss_pred hc
Q 043490 410 QL 411 (589)
Q Consensus 410 ~~ 411 (589)
++
T Consensus 265 ~i 266 (293)
T 3u3w_A 265 FF 266 (293)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.35 E-value=2e-06 Score=70.77 Aligned_cols=94 Identities=13% Similarity=-0.029 Sum_probs=76.5
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhc
Q 043490 352 HYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLS 429 (589)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 429 (589)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|.++.+|..++.+|...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 4555666677778888888777776 3344 4788888888899999999999999999999998888999999999999
Q ss_pred CChHHHHHHHHHHhcC
Q 043490 430 GSFNKARLIRKEMKGS 445 (589)
Q Consensus 430 g~~~~a~~~~~~m~~~ 445 (589)
|++++|...+++..+.
T Consensus 86 ~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 86 KEYASALETLDAARTK 101 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHh
Confidence 9999999999887654
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.34 E-value=1.3e-06 Score=76.79 Aligned_cols=120 Identities=5% Similarity=0.070 Sum_probs=93.8
Q ss_pred hccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCH--H
Q 043490 325 SHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGS-CRKHGET--R 399 (589)
Q Consensus 325 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~ 399 (589)
...|++++|...++...+.. +.+...+..+...|...|++++|...|++. ...| +...|..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 34577788888887776542 235567888888888888888888888877 3334 57778888888 7788998 9
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 400 LAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 400 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
+|...++++.+.+|.++..+..++.+|...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999887654
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.31 E-value=2e-06 Score=73.15 Aligned_cols=111 Identities=13% Similarity=0.025 Sum_probs=83.6
Q ss_pred HHhC-CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 043490 305 FSNM-NVQPDS-ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEP 380 (589)
Q Consensus 305 ~~~m-~~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 380 (589)
|+++ .+.|+. ..+..+...+...|++++|...|+..+.. .| +...|..+..+|.+.|++++|++.|++. ...|
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4444 555543 45666777777888888888888877643 34 5567777788888888888888888877 3345
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhH
Q 043490 381 -DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLG 418 (589)
Q Consensus 381 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 418 (589)
+...|..+..++...|++++|...+++++++.|+++..
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 46788888899999999999999999999998876654
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.30 E-value=4.9e-06 Score=74.58 Aligned_cols=58 Identities=14% Similarity=0.084 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 043490 283 VSWNSILKAYALHGQAKEALQLFSNM-------NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSM 340 (589)
Q Consensus 283 ~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 340 (589)
.++..+...|...|++++|+..|++. +..| ...++..+...+...|++++|.+.++..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 92 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444455555555555555555444 1111 1234444555555555555555555544
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.29 E-value=3.9e-06 Score=80.02 Aligned_cols=190 Identities=7% Similarity=-0.084 Sum_probs=129.1
Q ss_pred CHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHH
Q 043490 215 DWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTY---HDLVSWNSILKA 291 (589)
Q Consensus 215 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 291 (589)
+...+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...+++..+ .+...|..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45566777778888999999999999998875 55788899999999999999999999998773 456788999999
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHH
Q 043490 292 YALHGQAKEALQLFSNM-NVQPDS-ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEA 369 (589)
Q Consensus 292 ~~~~g~~~~A~~~~~~m-~~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 369 (589)
|...|++++|+..|++. .+.|+. ..+...+.... ...++.... .. .......+......+... ..|+.++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~-~~-~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWN-SI-EERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHH-HH-HHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHH-HH-HHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 99999999999999988 443421 01111111111 111112221 22 222344455554444333 37899999
Q ss_pred HHHHHhC-CCCCCHH-HHHHHHHHHHHc-CCHHHHHHHHHHHhhcC
Q 043490 370 EKLIREM-PMEPDSV-IWSVLLGSCRKH-GETRLAELAATKLKQLE 412 (589)
Q Consensus 370 ~~~~~~m-~~~p~~~-~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~ 412 (589)
.+.+++. ...|+.. ....+...+.+. +.+++|.++|+++.+..
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999877 6677643 334444444444 66788999998887643
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.28 E-value=4.8e-06 Score=69.32 Aligned_cols=97 Identities=10% Similarity=-0.050 Sum_probs=81.6
Q ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHh
Q 043490 349 QLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIY 426 (589)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 426 (589)
+...+..+...+...|++++|...|++. ...| +...|..+...+...|+++.|...++++++.+|.++.++..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4556677777788888888888888776 3344 4788888999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHhcC
Q 043490 427 CLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 427 ~~~g~~~~a~~~~~~m~~~ 445 (589)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.27 E-value=3.5e-06 Score=70.98 Aligned_cols=116 Identities=11% Similarity=0.009 Sum_probs=86.5
Q ss_pred HHHhC-CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 043490 304 LFSNM-NVQPDS-ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PME 379 (589)
Q Consensus 304 ~~~~m-~~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 379 (589)
.|++. .+.|+. ..+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|...|++. ...
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44555 556643 35566677778888888888888887654 34 5567778888888899999999888887 334
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 043490 380 P-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQM 422 (589)
Q Consensus 380 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 422 (589)
| +...|..+..++...|++++|...+++++++.|.++......
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 5 367788888999999999999999999999988776654443
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=3.3e-06 Score=73.11 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=65.5
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhh
Q 043490 351 DHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCL 428 (589)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 428 (589)
..+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.+...|..+..+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34555556666666666666666665 3334 466677777777777777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHhcC
Q 043490 429 SGSFNKARLIRKEMKGS 445 (589)
Q Consensus 429 ~g~~~~a~~~~~~m~~~ 445 (589)
.|++++|...+++..+.
T Consensus 92 ~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIEA 108 (164)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHh
Confidence 77777777777776643
No 148
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1.6e-05 Score=66.95 Aligned_cols=112 Identities=13% Similarity=-0.038 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccC----cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 043490 314 SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQ----LDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSV 387 (589)
Q Consensus 314 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 387 (589)
...+..+...+...|++++|.+.|+...+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34455555555556666666666655542 2343 345555666666666666666666655 2234 4667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhh
Q 043490 388 LLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCL 428 (589)
Q Consensus 388 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 428 (589)
+..++...|++++|...++++.+.+|.+...+..+..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 78888888888888888888888888777766666655443
No 149
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.25 E-value=8.7e-05 Score=71.82 Aligned_cols=209 Identities=10% Similarity=0.084 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHhhcC---CCChhHHHHHHHHHHHc-C-CHHHHHHHHH
Q 043490 233 RHASAVHSLIAKYGFEDDTVIANALIHAYARCG-SISLSKQVFDKMT---YHDLVSWNSILKAYALH-G-QAKEALQLFS 306 (589)
Q Consensus 233 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~~~~ 306 (589)
++|.++.+.++... +.+..+|+.--..+...| .++++++.++.+. .++..+|+.-...+.+. + ++++++++++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 45566666666554 445555665555555566 4777777777665 34556666666555555 5 6677777777
Q ss_pred hC-CCCC-CHHHHHHHHHHHhccCcHH--------HHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCC-------HHHH
Q 043490 307 NM-NVQP-DSATFVSLLSACSHAGLVQ--------EGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGR-------ILEA 369 (589)
Q Consensus 307 ~m-~~~p-~~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A 369 (589)
++ ...| |..+|+.-.....+.|.++ ++.+.++.+.+.. .-|...|+.....+.+.++ ++++
T Consensus 150 k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~eE 227 (349)
T 3q7a_A 150 GSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQDE 227 (349)
T ss_dssp HHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHHHHHH
Confidence 77 5555 4445554444444444444 6777777776541 2255566666666666665 6777
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHhhcC------CCChhHHHH
Q 043490 370 EKLIREM-PMEP-DSVIWSVLLGSCRKHGET--------------------RLAELAATKLKQLE------PGDSLGFVQ 421 (589)
Q Consensus 370 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~~~~~ 421 (589)
++.++++ ...| |...|+.+-..+.+.|+. .........+.... +.++.+...
T Consensus 228 Le~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~ 307 (349)
T 3q7a_A 228 LIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEY 307 (349)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHH
Confidence 7777766 3344 577887777767666553 22222222222222 456777889
Q ss_pred HHHHhhhcCChHHHHHHHHHHhc
Q 043490 422 MSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 422 l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
|+++|...|+.++|.++++.+.+
T Consensus 308 l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 308 LADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Confidence 99999999999999999999863
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.24 E-value=1.2e-05 Score=64.43 Aligned_cols=109 Identities=8% Similarity=-0.030 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 043490 315 ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSC 392 (589)
Q Consensus 315 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 392 (589)
..+..+...+...|++++|.+.++...... +.+...+..+...|.+.|++++|...+++. ...| +...|..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344455555556666666666666554321 113445555555566666666666666555 2223 355666666666
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 043490 393 RKHGETRLAELAATKLKQLEPGDSLGFVQMSNI 425 (589)
Q Consensus 393 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 425 (589)
...|++++|...++++.+.+|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 666777777777777766666665555554443
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.24 E-value=1e-05 Score=65.62 Aligned_cols=97 Identities=16% Similarity=0.236 Sum_probs=86.9
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhh
Q 043490 350 LDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYC 427 (589)
Q Consensus 350 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 427 (589)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++.+..|.++.++..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456778889999999999999999988 3334 58889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHhcCC
Q 043490 428 LSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 428 ~~g~~~~a~~~~~~m~~~~ 446 (589)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987643
No 152
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.23 E-value=1.2e-05 Score=69.22 Aligned_cols=91 Identities=10% Similarity=-0.086 Sum_probs=35.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHH
Q 043490 316 TFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWS--VLLGS 391 (589)
Q Consensus 316 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~--~ll~~ 391 (589)
++..+...+...|++++|.+.++...+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...+. .+...
T Consensus 49 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 126 (166)
T 1a17_A 49 YYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33333444444444444444444433221 112233444444444444444444444443 1112 122222 22222
Q ss_pred HHHcCCHHHHHHHHHHH
Q 043490 392 CRKHGETRLAELAATKL 408 (589)
Q Consensus 392 ~~~~g~~~~a~~~~~~~ 408 (589)
+...|++++|...+++.
T Consensus 127 ~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 127 IVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccch
Confidence 44445555555555544
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.22 E-value=7.2e-06 Score=67.60 Aligned_cols=97 Identities=19% Similarity=0.059 Sum_probs=87.9
Q ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHh
Q 043490 349 QLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIY 426 (589)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 426 (589)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++.+..|.+..++..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3456778889999999999999999987 5556 5888999999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHhcC
Q 043490 427 CLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 427 ~~~g~~~~a~~~~~~m~~~ 445 (589)
.+.|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988754
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.21 E-value=1.1e-05 Score=64.71 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=86.6
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhh
Q 043490 350 LDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYC 427 (589)
Q Consensus 350 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 427 (589)
...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|.++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345677788899999999999999988 3344 58889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHhcCC
Q 043490 428 LSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 428 ~~g~~~~a~~~~~~m~~~~ 446 (589)
..|++++|...+++..+.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999987654
No 155
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.19 E-value=0.00043 Score=66.98 Aligned_cols=225 Identities=12% Similarity=0.056 Sum_probs=164.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc-C-CH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPD-WCTFSIVLKACAGLV-TERHASAVHSLIAKYGFEDDTVIANALIHAYARC-G-SI 267 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~-g-~~ 267 (589)
.+.+..++|++++.+++.. .|+ ...|+.--..+...+ +++++..+++.+++.. +.+..+|+.-...+.+. + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 5566778999999999985 454 445565555555667 5999999999999876 67788888777777776 7 88
Q ss_pred HHHHHHHhhcCC---CChhHHHHHHHHHHHcCCHH--------HHHHHHHhC-CCCC-CHHHHHHHHHHHhccCc-----
Q 043490 268 SLSKQVFDKMTY---HDLVSWNSILKAYALHGQAK--------EALQLFSNM-NVQP-DSATFVSLLSACSHAGL----- 329 (589)
Q Consensus 268 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~----- 329 (589)
++++++++++.+ +|..+|+.-.-.+.+.|..+ ++++.++++ ...| |...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccch
Confidence 999999999884 46678887666666666555 899999999 6666 66788887777777775
Q ss_pred --HHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCH--------------------HHHHHHHHhC-CC-------
Q 043490 330 --VQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRI--------------------LEAEKLIREM-PM------- 378 (589)
Q Consensus 330 --~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m-~~------- 378 (589)
++++.+.+...+.. .| |...|+-+-..+.+.|+. .+..++..++ +.
T Consensus 222 ~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 222 RSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred HHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 78888888887654 45 666777777777776653 3444555444 21
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-hcCCCChhHHHHH
Q 043490 379 EPDSVIWSVLLGSCRKHGETRLAELAATKLK-QLEPGDSLGFVQM 422 (589)
Q Consensus 379 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l 422 (589)
.++...+..|+..|...|+.++|.++++.+. +.+|-....|.-.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 2568889999999999999999999999986 6778554444433
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.3e-05 Score=65.79 Aligned_cols=109 Identities=9% Similarity=-0.064 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 043490 315 ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGS 391 (589)
Q Consensus 315 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~ 391 (589)
..+..+...+...|++++|...|+..++. .| +...|..+..+|.+.|++++|+..+++. .+.|+ ...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 35566666777778888888888777643 33 4567777788888888888888888777 44454 7788888899
Q ss_pred HHHcCCHHHHHHHHHHHhhcC------CCChhHHHHHHHHh
Q 043490 392 CRKHGETRLAELAATKLKQLE------PGDSLGFVQMSNIY 426 (589)
Q Consensus 392 ~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 426 (589)
+...|++++|...++++.+++ |.+......+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 999999999999999999988 76666665555443
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=1.5e-05 Score=67.10 Aligned_cols=97 Identities=15% Similarity=0.068 Sum_probs=88.1
Q ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 043490 349 QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD----SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMS 423 (589)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 423 (589)
+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++.+..|.+...+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4456778888999999999999999988 66777 678888999999999999999999999999999999999999
Q ss_pred HHhhhcCChHHHHHHHHHHhcC
Q 043490 424 NIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 424 ~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
.+|...|++++|...+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988764
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.17 E-value=5.4e-06 Score=68.32 Aligned_cols=93 Identities=5% Similarity=-0.057 Sum_probs=76.2
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh-------hHHHHH
Q 043490 352 HYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDS-------LGFVQM 422 (589)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l 422 (589)
.+..+...|.+.|++++|++.|++. .+.|+ ...|..+..+|...|++++|+..++++++++|.+. .+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4556677788888888888888876 44554 78889999999999999999999999998887543 367788
Q ss_pred HHHhhhcCChHHHHHHHHHHhc
Q 043490 423 SNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 423 ~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
..+|...|++++|++.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8899999999999999988654
No 159
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.16 E-value=1.4e-05 Score=71.55 Aligned_cols=113 Identities=13% Similarity=-0.019 Sum_probs=60.8
Q ss_pred CCHHHHHH---HHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHH
Q 043490 151 SCADEAWK---VFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQRE----GMAP-DWCTFSIV 222 (589)
Q Consensus 151 g~~~~A~~---lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~l 222 (589)
|++++|.+ ++..-+......++.+...+ ...|++++|+..|++.... +..| ....+..+
T Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 72 (203)
T 3gw4_A 6 HDYALAERQAQALLAHPATASGARFMLGYVY-------------AFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQV 72 (203)
T ss_dssp -CHHHHHHHHHHHHTSTTTHHHHHHHHHHHH-------------HHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHHHH-------------HHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 77888888 55553434556677777777 6667777777766665441 1111 22344555
Q ss_pred HHHHhCcCcHHHHHHHHHHHHHh----CCC--CcHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 043490 223 LKACAGLVTERHASAVHSLIAKY----GFE--DDTVIANALIHAYARCGSISLSKQVFDK 276 (589)
Q Consensus 223 l~a~~~~~~~~~a~~i~~~~~~~----g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 276 (589)
...+...|+++.|...+....+. +-. ....++..+...|...|++++|...+++
T Consensus 73 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 55556666666666666555443 101 1123344455555555555555555444
No 160
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=5.8e-05 Score=76.60 Aligned_cols=160 Identities=10% Similarity=-0.043 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCcc-Ccc
Q 043490 284 SWNSILKAYALHGQAKEALQLFSNM----NVQPDSA----TFVSLLSACSHAGLVQEGNKVFHSMLENH---GVVP-QLD 351 (589)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~ 351 (589)
++..+...|...|++++|.+.+.+. +..++.. ..+.+-..+...|+.+++.+++....... +..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 3566778888888888888888877 2222221 22223334445788888888887764322 1111 234
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC---CCC----h
Q 043490 352 HYACMVDLLGRVGRILEAEKLIREM-------PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLE---PGD----S 416 (589)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~ 416 (589)
++..+...|...|++++|..++++. .-+|. ..++..++..|...|++++|..+++++.... +.+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6778889999999999999998876 11232 5678888999999999999999999887643 222 2
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 417 LGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 417 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
..+..+...+...|++++|.+.+.+..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456778888999999999998887664
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.13 E-value=1.9e-05 Score=68.23 Aligned_cols=106 Identities=15% Similarity=0.028 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 043490 314 SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLG 390 (589)
Q Consensus 314 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~ 390 (589)
...+..+...+...|++++|.+.|+..++. .| +...|..+...|.+.|++++|+..|++. .+.|+ ...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345666777777888888888888877654 34 5567778888888888888888888877 44454 888999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 043490 391 SCRKHGETRLAELAATKLKQLEPGDSLGFVQM 422 (589)
Q Consensus 391 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 422 (589)
++...|++++|...++++++++|.+...+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999999999887765443
No 162
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.12 E-value=0.0005 Score=66.18 Aligned_cols=223 Identities=12% Similarity=0.078 Sum_probs=123.6
Q ss_pred HHcCCH-HHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCcCc----------HHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 043490 192 AKMKNE-EEALFLFRQLQREGMAPDWCT-FSIVLKACAGLVT----------ERHASAVHSLIAKYGFEDDTVIANALIH 259 (589)
Q Consensus 192 ~~~g~~-~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~----------~~~a~~i~~~~~~~g~~~~~~~~~~li~ 259 (589)
.+.|.+ ++|++++.++... .|+..| |+.--..+...+. ++.+..+++.++... +-+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 344444 5889999998874 455443 3322222222222 567777777777765 567777776666
Q ss_pred HHHhcC--CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCC-HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhcc----
Q 043490 260 AYARCG--SISLSKQVFDKMT---YHDLVSWNSILKAYALHGQ-AKEALQLFSNM-NVQP-DSATFVSLLSACSHA---- 327 (589)
Q Consensus 260 ~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~---- 327 (589)
.+.+.| .++++..+++++. .+|..+|+.-.-.+...|. .+++++.++++ ...| |...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 666666 3778888887776 4566777777777777777 57788888777 5555 445555444443332
Q ss_pred ----------CcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhc-----------CCHHHHHHHHHhC-CCCCCHHH
Q 043490 328 ----------GLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRV-----------GRILEAEKLIREM-PMEPDSVI 384 (589)
Q Consensus 328 ----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~ 384 (589)
+.++++.+.+...+.. .| |...|+-+-..+.+. +.++++++.++++ ...||. .
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~ 272 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K 272 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred ccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence 3456666666655432 33 444444444444333 3355555555555 334442 2
Q ss_pred HHHHHHH-----HHHcCCHHHHHHHHHHHhhcCCCChhHHHH
Q 043490 385 WSVLLGS-----CRKHGETRLAELAATKLKQLEPGDSLGFVQ 421 (589)
Q Consensus 385 ~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 421 (589)
|..+-.+ ....|..++....+.++.+++|....-|.-
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d 314 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 314 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHH
Confidence 3211111 112344555555566666666544443433
No 163
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.11 E-value=1.8e-05 Score=81.17 Aligned_cols=95 Identities=12% Similarity=-0.012 Sum_probs=77.4
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhh
Q 043490 350 LDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYC 427 (589)
Q Consensus 350 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 427 (589)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++++|+..|+++++++|.+..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 357788888899999999999999887 4445 48889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHH-HHHHHhc
Q 043490 428 LSGSFNKARL-IRKEMKG 444 (589)
Q Consensus 428 ~~g~~~~a~~-~~~~m~~ 444 (589)
+.|+++++.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999998864 5566644
No 164
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.10 E-value=1.6e-05 Score=65.04 Aligned_cols=97 Identities=12% Similarity=0.063 Sum_probs=87.0
Q ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHh
Q 043490 349 QLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIY 426 (589)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 426 (589)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+..|.++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4456777888999999999999999987 3344 5888999999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHhcC
Q 043490 427 CLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 427 ~~~g~~~~a~~~~~~m~~~ 445 (589)
...|++++|...+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999988764
No 165
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.09 E-value=1.6e-05 Score=69.55 Aligned_cols=112 Identities=7% Similarity=0.027 Sum_probs=53.0
Q ss_pred cCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHH-HHHcCCH--HHHH
Q 043490 229 LVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKA-YALHGQA--KEAL 302 (589)
Q Consensus 229 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~-~~~~g~~--~~A~ 302 (589)
.|+++.|...+...++.. +.+...+..+...|...|++++|...|++.. ..+...|..+... |...|++ ++|+
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 344444444444444443 3344455555555555555555555555443 2234444444444 4455554 5555
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043490 303 QLFSNM-NVQPD-SATFVSLLSACSHAGLVQEGNKVFHSML 341 (589)
Q Consensus 303 ~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 341 (589)
..|++. ...|+ ...+..+...+...|++++|...|+.+.
T Consensus 102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 555555 33332 3344444455555555555555555544
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.06 E-value=1.8e-05 Score=64.90 Aligned_cols=91 Identities=15% Similarity=0.074 Sum_probs=63.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hhHHHHHHHHh
Q 043490 355 CMVDLLGRVGRILEAEKLIREM-PMEPD-S---VIWSVLLGSCRKHGETRLAELAATKLKQLEPGD---SLGFVQMSNIY 426 (589)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 426 (589)
.+...+.+.|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++.+..|++ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3445566667777777766665 22232 2 466667777778888888888888888877776 66677788888
Q ss_pred hhcCChHHHHHHHHHHhcC
Q 043490 427 CLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 427 ~~~g~~~~a~~~~~~m~~~ 445 (589)
...|++++|...+++..+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888777653
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.05 E-value=2.5e-05 Score=64.84 Aligned_cols=100 Identities=7% Similarity=-0.118 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 043490 313 DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLG 390 (589)
Q Consensus 313 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 390 (589)
+...+..+...+...|++++|...|+..+... +.+...+..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 45566777777777777777777777765432 224556777777778888888888877776 3344 4778888888
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCC
Q 043490 391 SCRKHGETRLAELAATKLKQLEPG 414 (589)
Q Consensus 391 ~~~~~g~~~~a~~~~~~~~~~~p~ 414 (589)
++...|+++.|...++++.++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 889999999999999998887775
No 168
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.02 E-value=5.4e-06 Score=67.14 Aligned_cols=82 Identities=16% Similarity=0.082 Sum_probs=55.2
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHH
Q 043490 363 VGRILEAEKLIREM-PM---EPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARL 437 (589)
Q Consensus 363 ~g~~~~A~~~~~~m-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 437 (589)
.|++++|+..|++. .. .|+ ...|..+...+...|++++|+..++++++.+|.++.++..++.+|.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666655 33 243 55667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhc
Q 043490 438 IRKEMKG 444 (589)
Q Consensus 438 ~~~~m~~ 444 (589)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.02 E-value=0.00057 Score=65.79 Aligned_cols=212 Identities=10% Similarity=0.069 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHhhcC---CCChhHHHHHHHHHHHcCC-
Q 043490 232 ERHASAVHSLIAKYGFEDDTVIANALIHAYARCGS----------ISLSKQVFDKMT---YHDLVSWNSILKAYALHGQ- 297 (589)
Q Consensus 232 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~- 297 (589)
-++|..+.+.++..+ |.+..+|+.--..+...|. +++++.+++.+. .++..+|+.-...+...|+
T Consensus 46 s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 46 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp SHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc
Confidence 347888888888765 5556666654444433333 678888888876 4677899988888888884
Q ss_pred -HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCc-HHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhc----------
Q 043490 298 -AKEALQLFSNM-NVQP-DSATFVSLLSACSHAGL-VQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRV---------- 363 (589)
Q Consensus 298 -~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---------- 363 (589)
+++++++++++ ...| |..+|+.-...+...|. ++++.+.+..+++.. .-|...|+.....+.+.
T Consensus 125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC------
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhcccccccc
Confidence 89999999999 6666 66678777777777787 689999999887652 23555666666555554
Q ss_pred ----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhhcCCCChhHHHHHHHH-
Q 043490 364 ----GRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKH-----------GETRLAELAATKLKQLEPGDSLGFVQMSNI- 425 (589)
Q Consensus 364 ----g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~- 425 (589)
+.++++++.+.+. ...| |...|+.+-..+.+. +.++++++.++++++++|++.-++..++..
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~ 282 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 282 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 4588899998887 3445 588898766666555 457899999999999999886655544432
Q ss_pred --hhhcCChHHHHHHHHHHhcCC
Q 043490 426 --YCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 426 --~~~~g~~~~a~~~~~~m~~~~ 446 (589)
....|..+++...+.++.+-+
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HhhcccccHHHHHHHHHHHHHhC
Confidence 235688889999999887643
No 170
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.01 E-value=2.3e-05 Score=66.27 Aligned_cols=63 Identities=11% Similarity=-0.127 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-------CCCChhHH----HHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 382 SVIWSVLLGSCRKHGETRLAELAATKLKQL-------EPGDSLGF----VQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 382 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
...|..+..++.+.|++++|+..+++++++ +|++...| .....++...|++++|+..|++..+
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 348888888999999999999999999988 99999999 9999999999999999999998765
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.99 E-value=1.2e-05 Score=82.87 Aligned_cols=116 Identities=13% Similarity=-0.011 Sum_probs=89.8
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCH
Q 043490 322 SACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGET 398 (589)
Q Consensus 322 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~ 398 (589)
..+...|++++|.+.+++..+. .| +...|..+..+|.+.|++++|++.+++. ...|+ ...|..+..+|...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3455678888888888877654 34 4567788888888888888888888877 44554 78888889999999999
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHH--hhhcCChHHHHHHHH
Q 043490 399 RLAELAATKLKQLEPGDSLGFVQMSNI--YCLSGSFNKARLIRK 440 (589)
Q Consensus 399 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 440 (589)
++|+..++++.+.+|.+...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999888888888777 888899999998887
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.98 E-value=0.00012 Score=59.92 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=73.5
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCccCc----chHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 043490 319 SLLSACSHAGLVQEGNKVFHSMLENHGVVPQL----DHYACMVDLLGRVGRILEAEKLIREM-PMEPD----SVIWSVLL 389 (589)
Q Consensus 319 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll 389 (589)
.+...+...|++++|.+.|+.+.+. .|+. ..+..+...|.+.|++++|...|++. ...|+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 3445666778888888888777654 2332 36667777788888888888888776 22333 56677888
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 043490 390 GSCRKHGETRLAELAATKLKQLEPGDSLGFVQM 422 (589)
Q Consensus 390 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 422 (589)
.++...|++++|...++++.+..|+++......
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 889999999999999999999998776554443
No 173
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.98 E-value=3.1e-05 Score=63.71 Aligned_cols=88 Identities=15% Similarity=0.136 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--------HHHHHHHH
Q 043490 254 ANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPD--------SATFVSLL 321 (589)
Q Consensus 254 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--------~~t~~~ll 321 (589)
+..|...|.+.|++++|...|++.. +.+...|+.+..+|.+.|++++|++.|++. .+.|+ ..+|..+.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 3445555555555555555555443 223445555555555555555555555554 22221 12344444
Q ss_pred HHHhccCcHHHHHHHHHHhH
Q 043490 322 SACSHAGLVQEGNKVFHSML 341 (589)
Q Consensus 322 ~a~~~~g~~~~a~~~~~~~~ 341 (589)
.++...|++++|.+.|+..+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 45555555555555555443
No 174
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.98 E-value=8.1e-05 Score=72.83 Aligned_cols=158 Identities=11% Similarity=0.026 Sum_probs=94.9
Q ss_pred CCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043490 151 SCADEAWKVFENMEF--R-NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACA 227 (589)
Q Consensus 151 g~~~~A~~lf~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 227 (589)
+++++|...|+...+ | +...|..+...| .+.|++++|+..|++..... |+...
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~-------------~~~g~~~~A~~~y~~Al~~~--p~~~~--------- 182 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVY-------------FKEGKYKQALLQYKKIVSWL--EYESS--------- 182 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHH-------------HHHTCHHHHHHHHHHHHHHT--TTCCC---------
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHH-------------HHCCCHHHHHHHHHHHHHHh--hcccc---------
Confidence 344444444444332 2 345677777888 88999999999999887753 22100
Q ss_pred CcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHH
Q 043490 228 GLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQL 304 (589)
Q Consensus 228 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 304 (589)
. ..+.+.++- +....++..+...|.+.|++++|...|++.. ..+..+|..+..+|...|++++|+..
T Consensus 183 -~-~~~~~~~~~--------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 252 (336)
T 1p5q_A 183 -F-SNEEAQKAQ--------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARAD 252 (336)
T ss_dssp -C-CSHHHHHHH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -C-ChHHHHHHH--------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 0 001111110 1123456666667777777777777776655 33556677777777777777777777
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHhccCcHHHH-HHHHHHhHH
Q 043490 305 FSNM-NVQPD-SATFVSLLSACSHAGLVQEG-NKVFHSMLE 342 (589)
Q Consensus 305 ~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a-~~~~~~~~~ 342 (589)
|++. .+.|+ ...+..+..++...|+.+++ .+.+..|..
T Consensus 253 ~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 253 FQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777 55553 45666666677777777776 445555543
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.96 E-value=2.8e-05 Score=66.94 Aligned_cols=64 Identities=9% Similarity=0.052 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 382 SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 382 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
...|..+..+|.+.|+++.|+..++++++++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 5678888888999999999999999999999999999999999999999999999999887654
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.96 E-value=5.2e-05 Score=75.17 Aligned_cols=89 Identities=10% Similarity=-0.032 Sum_probs=78.8
Q ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHh
Q 043490 349 QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIY 426 (589)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 426 (589)
+...|..+..+|.+.|++++|++.+++. ...|+ ...|..+..+|...|++++|...++++++++|.+...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3457888889999999999999999888 66665 888999999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHH
Q 043490 427 CLSGSFNKARL 437 (589)
Q Consensus 427 ~~~g~~~~a~~ 437 (589)
...++.+++.+
T Consensus 352 ~~~~~~~~a~k 362 (370)
T 1ihg_A 352 QKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888877765
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.95 E-value=3.4e-05 Score=63.08 Aligned_cols=94 Identities=9% Similarity=0.050 Sum_probs=76.2
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-------hhHHHHH
Q 043490 352 HYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGD-------SLGFVQM 422 (589)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l 422 (589)
.+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++.+..|.+ ..++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4556666777777888888777766 2233 57788888889999999999999999998887655 7788999
Q ss_pred HHHhhhcCChHHHHHHHHHHhcC
Q 043490 423 SNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 423 ~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
+.+|...|++++|.+.+++..+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999988763
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.95 E-value=5.9e-05 Score=64.17 Aligned_cols=128 Identities=13% Similarity=0.022 Sum_probs=77.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCccC----cchHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHH
Q 043490 317 FVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQ----LDHYACMVDLLGRVGRILEAEKLIREM----PMEPD----SVI 384 (589)
Q Consensus 317 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~ 384 (589)
+..+...+...|++++|.+.++...+...-.++ ...+..+...|...|++++|.+.+++. +..++ ..+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444445555555555555444322110011 124555556666666666666666554 10111 446
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCC------CChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 385 WSVLLGSCRKHGETRLAELAATKLKQLEP------GDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 385 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
+..+...+...|++++|...+++..+..+ ....++..++.+|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 67777788888888888888888776421 1245677888999999999999998887653
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.94 E-value=2.9e-05 Score=63.50 Aligned_cols=109 Identities=9% Similarity=-0.068 Sum_probs=69.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CC----CCC----HHHHH
Q 043490 316 TFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PM----EPD----SVIWS 386 (589)
Q Consensus 316 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----~p~----~~~~~ 386 (589)
.+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|...+++. .. .++ ..+|.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 44555555666666666666666654431 223445566666666666666666666655 11 122 56777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhh
Q 043490 387 VLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYC 427 (589)
Q Consensus 387 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 427 (589)
.+...+...|+++.|...++++.+..| ++.....+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 788888888888888888888888877 5665555554443
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.93 E-value=3.6e-05 Score=60.92 Aligned_cols=100 Identities=15% Similarity=0.093 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 043490 315 ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEP---DSVIWSVLLG 390 (589)
Q Consensus 315 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~ 390 (589)
..+..+...+...|++++|...++...+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 455566667777788888888887776532 224556777777888888888888888776 3334 4778888888
Q ss_pred HHHHc-CCHHHHHHHHHHHhhcCCCCh
Q 043490 391 SCRKH-GETRLAELAATKLKQLEPGDS 416 (589)
Q Consensus 391 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 416 (589)
.+... |++++|.+.++++.+..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88899 999999999999988888653
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.92 E-value=0.00012 Score=75.09 Aligned_cols=123 Identities=14% Similarity=0.092 Sum_probs=92.9
Q ss_pred HhccCcHHHHHHHHHHhHHhcC--Ccc----CcchHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 043490 324 CSHAGLVQEGNKVFHSMLENHG--VVP----QLDHYACMVDLLGRVGRILEAEKLIREM---------PMEPD-SVIWSV 387 (589)
Q Consensus 324 ~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ 387 (589)
+...|++++|..++++.++... +.| ...+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4467788888877766654321 112 1346777888888888888888887765 33455 677899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhh-----cCCCChhH---HHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 388 LLGSCRKHGETRLAELAATKLKQ-----LEPGDSLG---FVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 388 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
|...|...|++++|+.+++++++ ++|+.+.+ ...|..++...|++++|..++.++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875 56766554 4577888899999999999999998644
No 182
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.91 E-value=4.5e-05 Score=62.10 Aligned_cols=96 Identities=9% Similarity=0.002 Sum_probs=69.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 043490 317 FVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCR 393 (589)
Q Consensus 317 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~ 393 (589)
+..+...+.+.|++++|...|+..++. .| +...|..+..++.+.|++++|+..|++. .+.|+ ...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 444555667778888888888777653 34 5566777777888888888888888777 44554 778888888888
Q ss_pred HcCCHHHHHHHHHHHhhcCCCC
Q 043490 394 KHGETRLAELAATKLKQLEPGD 415 (589)
Q Consensus 394 ~~g~~~~a~~~~~~~~~~~p~~ 415 (589)
..|++++|...++++++.+|.+
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-----
T ss_pred HcCCHHHHHHHHHHHHHhCcCC
Confidence 8999999999999998888854
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.0002 Score=72.50 Aligned_cols=185 Identities=9% Similarity=-0.044 Sum_probs=133.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhC-CCCcH---
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPD----------------WCTFSIVLKACAGLVTERHASAVHSLIAKYG-FEDDT--- 251 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~--- 251 (589)
.+.|++++|++.|.+..+...... ...+..+...|...|++++|.+.+..+.+.- -.++.
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTV 94 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHH
Confidence 678999999999999887532211 1247778889999999999999998876531 11222
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-----CC--CCC-
Q 043490 252 -VIANALIHAYARCGSISLSKQVFDKMTY-----HD----LVSWNSILKAYALHGQAKEALQLFSNM-----NV--QPD- 313 (589)
Q Consensus 252 -~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~--~p~- 313 (589)
.+.+.+...+...|+.+.|..++..... .+ ..++..+...|...|++++|..++++. +. +|.
T Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 174 (434)
T 4b4t_Q 95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSL 174 (434)
T ss_dssp HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhH
Confidence 2344455556667899999998877641 11 347788899999999999999999987 22 222
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccC-----cchHHHHHHHHhhcCCHHHHHHHHHhC
Q 043490 314 SATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQ-----LDHYACMVDLLGRVGRILEAEKLIREM 376 (589)
Q Consensus 314 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 376 (589)
..++..++..|...|++++|..+++.......-.++ ...+..+...+...|++++|...|.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 175 VDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 347788888999999999999999877543221222 235667777888899999998877655
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.90 E-value=5.7e-05 Score=77.77 Aligned_cols=115 Identities=8% Similarity=0.022 Sum_probs=74.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhccCcHH
Q 043490 257 LIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPD-SATFVSLLSACSHAGLVQ 331 (589)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ll~a~~~~g~~~ 331 (589)
+...|.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++|++.|++. .+.|+ ..++..+..++...|+++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3445667778888888887765 335667777777788888888888888777 55553 456777777777778888
Q ss_pred HHHHHHHHhHHhcCCcc-CcchHHHHHHH--HhhcCCHHHHHHHHH
Q 043490 332 EGNKVFHSMLENHGVVP-QLDHYACMVDL--LGRVGRILEAEKLIR 374 (589)
Q Consensus 332 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~--~~~~g~~~~A~~~~~ 374 (589)
+|.+.|++..+. .| +...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888877777654 23 23344444444 666677777777776
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.87 E-value=5.6e-05 Score=64.34 Aligned_cols=60 Identities=10% Similarity=-0.092 Sum_probs=36.1
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 043490 352 HYACMVDLLGRVGRILEAEKLIREM-------PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQL 411 (589)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 411 (589)
.+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++..++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444555555555555555555544 1111 1345666777778888888888888877654
No 186
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.85 E-value=3.9e-05 Score=68.56 Aligned_cols=151 Identities=9% Similarity=0.006 Sum_probs=76.9
Q ss_pred CCHHHHHHHHhhCCC---CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043490 151 SCADEAWKVFENMEF---RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACA 227 (589)
Q Consensus 151 g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 227 (589)
|+++.+...++.-.. .....|..+...+ .+.|++++|+..|++..... |+...+...
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------------~~~~~~~~A~~~~~~al~~~--~~~~~~~~~----- 77 (198)
T 2fbn_A 18 YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEF-------------FKKNEINEAIVKYKEALDFF--IHTEEWDDQ----- 77 (198)
T ss_dssp ----CCCSGGGCCHHHHHHHHHHHHHHHHHH-------------HHTTCHHHHHHHHHHHHHTT--TTCTTCCCH-----
T ss_pred hhccccCchhhCCHHHHHHHHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHHH--hcccccchh-----
Confidence 566666655554332 1334566666677 88899999999999988742 211000000
Q ss_pred CcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHH
Q 043490 228 GLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQL 304 (589)
Q Consensus 228 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 304 (589)
....-. . .....++..+...|.+.|++++|...+++.. ..+..+|..+..+|...|++++|++.
T Consensus 78 ---~~~~~~---~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 144 (198)
T 2fbn_A 78 ---ILLDKK---K-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKEN 144 (198)
T ss_dssp ---HHHHHH---H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ---hHHHHH---H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHH
Confidence 000000 0 0012344555555666666666666665544 23445566666666666666666666
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHhccCcHHHHH
Q 043490 305 FSNM-NVQPD-SATFVSLLSACSHAGLVQEGN 334 (589)
Q Consensus 305 ~~~m-~~~p~-~~t~~~ll~a~~~~g~~~~a~ 334 (589)
|++. .+.|+ ...+..+..++...++.+++.
T Consensus 145 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 145 LYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6666 44443 334444555555555555544
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.83 E-value=2.8e-05 Score=65.76 Aligned_cols=68 Identities=13% Similarity=0.034 Sum_probs=52.7
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-C-------CCCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhH
Q 043490 352 HYACMVDLLGRVGRILEAEKLIREM-P-------MEPD-SVIW----SVLLGSCRKHGETRLAELAATKLKQLEPGDSLG 418 (589)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m-~-------~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 418 (589)
.|..+..++.+.|++++|+..+++. . +.|+ ...| .....++...|++++|+..|++++++.|.|...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5566666666666666666666555 3 3887 6788 899999999999999999999999999977654
Q ss_pred H
Q 043490 419 F 419 (589)
Q Consensus 419 ~ 419 (589)
+
T Consensus 139 ~ 139 (159)
T 2hr2_A 139 T 139 (159)
T ss_dssp C
T ss_pred H
Confidence 3
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.82 E-value=1.9e-05 Score=77.44 Aligned_cols=146 Identities=12% Similarity=-0.019 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHh
Q 043490 283 VSWNSILKAYALHGQAKEALQLFSNM-NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLG 361 (589)
Q Consensus 283 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 361 (589)
..|..+...+.+.|++++|+..|++. ...|+... +...++.+++...+. ...|..+..+|.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~~ 241 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 45666777777888888888888887 66665442 223344444332221 126777888888
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHh-hhcCChHHHHHH
Q 043490 362 RVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIY-CLSGSFNKARLI 438 (589)
Q Consensus 362 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~~~ 438 (589)
+.|++++|+..+++. ...| +...|..+..+|...|++++|...++++++++|.+..++..|..+. ...+..+.+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988877 4445 4788888889999999999999999999999998888888877773 345667777778
Q ss_pred HHHHhcCC
Q 043490 439 RKEMKGSR 446 (589)
Q Consensus 439 ~~~m~~~~ 446 (589)
+.+|....
T Consensus 322 ~~~~l~~~ 329 (338)
T 2if4_A 322 YKGIFKGK 329 (338)
T ss_dssp --------
T ss_pred HHHhhCCC
Confidence 87776543
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.81 E-value=6.4e-05 Score=64.65 Aligned_cols=73 Identities=19% Similarity=0.077 Sum_probs=60.4
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh-hHHHHH
Q 043490 350 LDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDS-LGFVQM 422 (589)
Q Consensus 350 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l 422 (589)
...|..+..+|.+.|++++|+..+++. .+.|+ ...|..+..++...|++++|...++++++++|.++ .....+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 346778888899999999999998887 44554 88899999999999999999999999999999877 333333
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.78 E-value=2.4e-05 Score=63.17 Aligned_cols=92 Identities=11% Similarity=0.042 Sum_probs=66.8
Q ss_pred cCcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 043490 327 AGLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAEL 403 (589)
Q Consensus 327 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~ 403 (589)
.|++++|...|+..++...-.| +...+..+...|.+.|++++|++.|++. ...|+ ...+..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 5677778888877753200023 4556777888888888888888888877 33454 7788888999999999999999
Q ss_pred HHHHHhhcCCCChhH
Q 043490 404 AATKLKQLEPGDSLG 418 (589)
Q Consensus 404 ~~~~~~~~~p~~~~~ 418 (589)
.++++++..|.++..
T Consensus 83 ~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 83 LLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred HHHHHHHhCCCcHHH
Confidence 999999998877654
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.76 E-value=8.9e-06 Score=64.74 Aligned_cols=91 Identities=15% Similarity=0.003 Sum_probs=70.5
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC------hhHHHH
Q 043490 350 LDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGD------SLGFVQ 421 (589)
Q Consensus 350 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 421 (589)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|.+ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345566677777788888888888776 3344 47888889999999999999999999999999987 667777
Q ss_pred HHHHhhhcCChHHHHHHHH
Q 043490 422 MSNIYCLSGSFNKARLIRK 440 (589)
Q Consensus 422 l~~~~~~~g~~~~a~~~~~ 440 (589)
+..++...|++++|...++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 8888887777766655444
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.71 E-value=0.0011 Score=69.62 Aligned_cols=165 Identities=8% Similarity=-0.012 Sum_probs=127.6
Q ss_pred HHHHHHHHhhcC---CCChhHHHHHHHHHHHcCC----------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccC--c
Q 043490 267 ISLSKQVFDKMT---YHDLVSWNSILKAYALHGQ----------AKEALQLFSNM-NVQP-DSATFVSLLSACSHAG--L 329 (589)
Q Consensus 267 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g--~ 329 (589)
.++|.+.++.+. ..+..+|+.--..+...|+ ++++++.++++ ...| +..+|..-..++.+.+ +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 456677777665 3345677776666666666 78888888888 6666 4567887777778888 6
Q ss_pred HHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----------
Q 043490 330 VQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVG-RILEAEKLIREM-PMEP-DSVIWSVLLGSCRKH---------- 395 (589)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---------- 395 (589)
++++.+.++.+.+. .| +...|+.-...+.+.| .++++++.++++ ...| |...|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 125 WARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred HHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 79999999888764 33 5566777777777888 889999999888 5556 488898888777663
Q ss_pred ----CCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHH
Q 043490 396 ----GETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNK 434 (589)
Q Consensus 396 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 434 (589)
+.++++.+.+++++..+|.+..+|.-+...+.+.|+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999888555
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.68 E-value=6.2e-05 Score=73.70 Aligned_cols=149 Identities=9% Similarity=0.002 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 043490 251 TVIANALIHAYARCGSISLSKQVFDKMTY--HDLVSWNSILKAYALHGQAKEALQLFSNMNVQPDSATFVSLLSACSHAG 328 (589)
Q Consensus 251 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~g 328 (589)
...+..+...|.+.|++++|...|++... |+.. .+...|+.+++...+. ...|..+..++.+.|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~g 244 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHcC
Confidence 45677888899999999999999998662 3222 1222333444443332 136777777888888
Q ss_pred cHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHHcCCHHHHHHH
Q 043490 329 LVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD-SVIWSVLLGS-CRKHGETRLAELA 404 (589)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~-~~~~g~~~~a~~~ 404 (589)
++++|...++..++. .| +...|..+..+|...|++++|...|++. .+.|+ ...+..|... ....+..+.+...
T Consensus 245 ~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 245 RYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp CCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887653 34 5567888888888999999999988887 55665 4455555444 2344667788888
Q ss_pred HHHHhhcCCCCh
Q 043490 405 ATKLKQLEPGDS 416 (589)
Q Consensus 405 ~~~~~~~~p~~~ 416 (589)
++++.+..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 888888887553
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.68 E-value=0.00012 Score=58.79 Aligned_cols=78 Identities=12% Similarity=0.057 Sum_probs=65.8
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 368 EAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 368 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
+|++.|++. ...| +...|..+...+...|++++|+..++++++.+|.+..+|..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555555 4455 47888889999999999999999999999999999999999999999999999999999987653
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.64 E-value=0.00023 Score=53.90 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=61.5
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhh
Q 043490 351 DHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCL 428 (589)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 428 (589)
..+..+...|.+.|++++|...+++. ...| +...|..+...+...|++++|...++++.+.+|.++.++..+..++.+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 45566666777777777777777766 2234 477788888888889999999999999999888888888888887765
Q ss_pred cC
Q 043490 429 SG 430 (589)
Q Consensus 429 ~g 430 (589)
.|
T Consensus 90 ~g 91 (91)
T 1na3_A 90 QG 91 (91)
T ss_dssp HC
T ss_pred cC
Confidence 54
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.63 E-value=0.00024 Score=55.39 Aligned_cols=64 Identities=14% Similarity=0.051 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 381 DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 381 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
+...|..+...+...|++++|+..++++++.+|.++.+|..++.+|...|++++|...+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4788999999999999999999999999999999999999999999999999999999998765
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.53 E-value=0.00041 Score=71.03 Aligned_cols=114 Identities=12% Similarity=0.031 Sum_probs=87.2
Q ss_pred HHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----cCCCCh---hHHH
Q 043490 359 LLGRVGRILEAEKLIREM---------PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQ-----LEPGDS---LGFV 420 (589)
Q Consensus 359 ~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~ 420 (589)
.+...|++++|+.++++. +-.|+ ..+++.|..+|...|++++|+.+++++++ ++|+++ .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999998776 23344 67899999999999999999999999875 455554 4578
Q ss_pred HHHHHhhhcCChHHHHHHHHHHhcCCCccCCceeeEEECCEEEEEeeCCCCCccHHHHHHHHHHHHHHHH
Q 043490 421 QMSNIYCLSGSFNKARLIRKEMKGSRVRKYPGLSWIEIENRVHEFASGGKRHPQREAIFKKLEELIGQLK 490 (589)
Q Consensus 421 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 490 (589)
.|+.+|...|++++|..++++..+--.. .. ...||...++...+.+...+++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-----------------~l-G~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-----------------TH-GPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HT-CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------------Hh-CCCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987642110 11 2468988888777766665554
No 198
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.47 E-value=0.00052 Score=69.17 Aligned_cols=116 Identities=12% Similarity=0.127 Sum_probs=88.9
Q ss_pred HHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----cCCCCh---hH
Q 043490 357 VDLLGRVGRILEAEKLIREM---------PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQ-----LEPGDS---LG 418 (589)
Q Consensus 357 i~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 418 (589)
+..+.+.|++++|++++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|.++ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566788999999888765 12233 56889999999999999999999999875 345444 45
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHhcCCCccCCceeeEEECCEEEEEeeCCCCCccHHHHHHHHHHHHHHHH
Q 043490 419 FVQMSNIYCLSGSFNKARLIRKEMKGSRVRKYPGLSWIEIENRVHEFASGGKRHPQREAIFKKLEELIGQLK 490 (589)
Q Consensus 419 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 490 (589)
+..|+.+|...|++++|..++++..+--. ..-...||...++...|.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999998764211 0113479999998888888877775
No 199
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.46 E-value=0.0012 Score=67.37 Aligned_cols=140 Identities=14% Similarity=0.056 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCC
Q 043490 168 VISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGF 247 (589)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 247 (589)
...|..+...| .+.|++++|+..|++..+.. |+... .. -+...++-
T Consensus 268 a~~~~~~G~~~-------------~~~g~~~~A~~~y~~Al~~~--p~~~~----------~~-~~~~~~~~-------- 313 (457)
T 1kt0_A 268 AAIVKEKGTVY-------------FKGGKYMQAVIQYGKIVSWL--EMEYG----------LS-EKESKASE-------- 313 (457)
T ss_dssp HHHHHHHHHHH-------------HHTTCHHHHHHHHHHHHHHH--TTCCS----------CC-HHHHHHHH--------
T ss_pred HHHHHHHHHHH-------------HhCCCHHHHHHHHHHHHHHh--ccccc----------CC-hHHHHHHH--------
Confidence 34566777777 88889999999988887632 22100 00 01100000
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHH
Q 043490 248 EDDTVIANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM-NVQPDS-ATFVSLLS 322 (589)
Q Consensus 248 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~t~~~ll~ 322 (589)
+....+|..+..+|.+.|++++|...|++.. ..+..+|..+..+|...|++++|+..|++. .+.|+. ..+..+..
T Consensus 314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1123456667777777777777777777665 345667777777777778888888888777 666643 45666666
Q ss_pred HHhccCcHHHHH-HHHHHhH
Q 043490 323 ACSHAGLVQEGN-KVFHSML 341 (589)
Q Consensus 323 a~~~~g~~~~a~-~~~~~~~ 341 (589)
++...++.+++. ..+..|.
T Consensus 394 ~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 666777776655 3444443
No 200
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.45 E-value=0.00036 Score=69.09 Aligned_cols=65 Identities=8% Similarity=-0.049 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 381 DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 381 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
+...|..+..+|.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 36788899999999999999999999999999999999999999999999999999999988764
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.44 E-value=8.3e-05 Score=62.68 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=67.4
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhhcCCCChhHHHHHHHHhhh
Q 043490 361 GRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGE----------TRLAELAATKLKQLEPGDSLGFVQMSNIYCL 428 (589)
Q Consensus 361 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 428 (589)
.|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..+.++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3455667777776666 3344 46667666666666654 5699999999999999999999999999998
Q ss_pred cC-----------ChHHHHHHHHHHhcCC
Q 043490 429 SG-----------SFNKARLIRKEMKGSR 446 (589)
Q Consensus 429 ~g-----------~~~~a~~~~~~m~~~~ 446 (589)
.| ++++|.+.|++..+.+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999988654
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.36 E-value=0.0013 Score=50.32 Aligned_cols=69 Identities=16% Similarity=0.002 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCc
Q 043490 380 PDSVIWSVLLGSCRKHGE---TRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVR 448 (589)
Q Consensus 380 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 448 (589)
+|...+..+..++...++ .++|..+++++++.+|.++.+...+...+.+.|++++|+..|+++.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 467888888888865555 799999999999999999999999999999999999999999999887653
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.00084 Score=52.85 Aligned_cols=67 Identities=15% Similarity=0.061 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 380 PDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 380 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
++...|..+...+...|++++|...++++++..|.++..+..++.+|.+.|++++|...+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3567788899999999999999999999999999999999999999999999999999999988654
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.16 E-value=0.0052 Score=50.95 Aligned_cols=112 Identities=8% Similarity=-0.113 Sum_probs=87.3
Q ss_pred CcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 043490 328 GLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRK----HGETRLAEL 403 (589)
Q Consensus 328 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~ 403 (589)
+++++|.++|+...+. | +.... |..+|...+.+++|.+.|++.--.-+...+..|...|.. .+++++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N---EMFGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4678888888877553 3 22233 777777778888888888887223467788888888887 789999999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHhhh----cCChHHHHHHHHHHhcCCC
Q 043490 404 AATKLKQLEPGDSLGFVQMSNIYCL----SGSFNKARLIRKEMKGSRV 447 (589)
Q Consensus 404 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 447 (589)
.+++..+. .++.++..|..+|.. .+++++|.+.+++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99998876 367888899999988 8999999999998887765
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.15 E-value=0.00047 Score=58.06 Aligned_cols=86 Identities=14% Similarity=0.102 Sum_probs=57.3
Q ss_pred CcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCC----------HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH
Q 043490 328 GLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGR----------ILEAEKLIREM-PMEPD-SVIWSVLLGSCRK 394 (589)
Q Consensus 328 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~----------~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~ 394 (589)
+.+++|.+.++..++. .| +...|..+..++...++ +++|+..|++. .+.|+ ...|..+..+|..
T Consensus 16 ~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4455555555555432 23 34455555555555444 45777777776 55665 6778888888877
Q ss_pred c-----------CCHHHHHHHHHHHhhcCCCCh
Q 043490 395 H-----------GETRLAELAATKLKQLEPGDS 416 (589)
Q Consensus 395 ~-----------g~~~~a~~~~~~~~~~~p~~~ 416 (589)
. |++++|++.|+++++++|++.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 6 489999999999999999764
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.07 E-value=0.002 Score=48.40 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 382 SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 382 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
...|..+...+...|++++|...++++.+..|.++.++..++.+|.+.|++++|...+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5678888899999999999999999999999999999999999999999999999999988764
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.06 E-value=0.0016 Score=65.45 Aligned_cols=83 Identities=8% Similarity=-0.066 Sum_probs=66.8
Q ss_pred hcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----cCCCCh---hHHHHHH
Q 043490 362 RVGRILEAEKLIREM---------PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQ-----LEPGDS---LGFVQMS 423 (589)
Q Consensus 362 ~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~ 423 (589)
..|++++|+.++++. +-.|+ ..+++.|..+|...|++++|+.+++++++ ++|+++ .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346788888887665 23344 57889999999999999999999999875 445444 4588999
Q ss_pred HHhhhcCChHHHHHHHHHHhc
Q 043490 424 NIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 424 ~~~~~~g~~~~a~~~~~~m~~ 444 (589)
.+|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998764
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.05 E-value=0.013 Score=48.52 Aligned_cols=106 Identities=11% Similarity=0.032 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----cCCHHHH
Q 043490 195 KNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYAR----CGSISLS 270 (589)
Q Consensus 195 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A 270 (589)
+++++|++.|++..+.| .|+.. +-..+...+..+.|.+.+....+.| +...+..|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34566777777766665 33333 4444555556666777777666654 45556666666666 5666666
Q ss_pred HHHHhhcC-CCChhHHHHHHHHHHH----cCCHHHHHHHHHhC
Q 043490 271 KQVFDKMT-YHDLVSWNSILKAYAL----HGQAKEALQLFSNM 308 (589)
Q Consensus 271 ~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m 308 (589)
.+.|++.. ..+..++..|...|.. .++.++|++.|++.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 66666554 2344555555555555 45555555555544
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.02 E-value=0.051 Score=56.86 Aligned_cols=167 Identities=11% Similarity=0.064 Sum_probs=111.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCcCc----------HHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 043490 193 KMKNEEEALFLFRQLQREGMAPDW-CTFSIVLKACAGLVT----------ERHASAVHSLIAKYGFEDDTVIANALIHAY 261 (589)
Q Consensus 193 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~----------~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 261 (589)
.....++|++.++++... .|+. ..|+.--.++...++ ++++.+.++.+++.. +-+..+|+.-.-.+
T Consensus 41 ~~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 41 AGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 334557889999998875 3443 345444444444455 888888888888876 66777888777778
Q ss_pred HhcC--CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhcc------
Q 043490 262 ARCG--SISLSKQVFDKMT---YHDLVSWNSILKAYALHG-QAKEALQLFSNM-NVQP-DSATFVSLLSACSHA------ 327 (589)
Q Consensus 262 ~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~------ 327 (589)
.+.| +++++.+.++++. .+|..+|+.-...+.+.| .++++++.++++ ...| |..+|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8888 6788988888887 456778888888888888 788888888888 6666 455666555554432
Q ss_pred --------CcHHHHHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCC
Q 043490 328 --------GLVQEGNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGR 365 (589)
Q Consensus 328 --------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 365 (589)
+.++++.+.+...... .| +...|..+-..+.+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~---~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH---CSSCSHHHHHHHHHHSCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhh---CCCCccHHHHHHHHHhcCCC
Confidence 3455555555555432 23 34445555555544444
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.95 E-value=0.0023 Score=50.91 Aligned_cols=78 Identities=15% Similarity=0.069 Sum_probs=53.6
Q ss_pred HHHHHHHhHHhcCCcc-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 043490 333 GNKVFHSMLENHGVVP-QLDHYACMVDLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLK 409 (589)
Q Consensus 333 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 409 (589)
+.+.|+...+ ..| +...+..+...|.+.|++++|+..|++. ...| +...|..+..++...|++++|...++++.
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555543 233 4456666777777777777777777766 3334 36777788888888888888888888888
Q ss_pred hcCC
Q 043490 410 QLEP 413 (589)
Q Consensus 410 ~~~p 413 (589)
+..|
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7765
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.94 E-value=0.0056 Score=61.53 Aligned_cols=93 Identities=11% Similarity=-0.086 Sum_probs=63.9
Q ss_pred cCcHHHHHHHHHHhHHhcC--CccC----cchHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 043490 327 AGLVQEGNKVFHSMLENHG--VVPQ----LDHYACMVDLLGRVGRILEAEKLIREM---------PMEPD-SVIWSVLLG 390 (589)
Q Consensus 327 ~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~ 390 (589)
.|++++|..++++.++... +.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566777766665544221 1121 235677777777777777777777665 33455 667899999
Q ss_pred HHHHcCCHHHHHHHHHHHhh-----cCCCChhHH
Q 043490 391 SCRKHGETRLAELAATKLKQ-----LEPGDSLGF 419 (589)
Q Consensus 391 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 419 (589)
.|...|++++|+.+++++++ ++|+.+.+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999875 567666543
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.87 E-value=0.01 Score=59.71 Aligned_cols=100 Identities=12% Similarity=-0.059 Sum_probs=66.0
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcC--CccC----cchHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHH
Q 043490 321 LSACSHAGLVQEGNKVFHSMLENHG--VVPQ----LDHYACMVDLLGRVGRILEAEKLIREM---------PMEPD-SVI 384 (589)
Q Consensus 321 l~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~ 384 (589)
+..+...|++++|..+++...+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3344455666777666666543211 1111 235666677777777777777777655 33455 667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh-----cCCCChhHHH
Q 043490 385 WSVLLGSCRKHGETRLAELAATKLKQ-----LEPGDSLGFV 420 (589)
Q Consensus 385 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 420 (589)
++.|...|...|++++|+.+++++++ ++|+.+.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 88899999999999999999998875 5676665543
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.82 E-value=0.044 Score=60.24 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=79.5
Q ss_pred HHHhcCChHHHHH-HHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHH
Q 043490 51 MYAKFGYLDDARH-LFDEMPKRNVVSWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALA 129 (589)
Q Consensus 51 ~~~~~g~~~~A~~-~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~ 129 (589)
.....+++++|.+ ++..++ +......++..+.+.|.+++|+++.+.-.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~----------------------------- 656 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQD----------------------------- 656 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCHH-----------------------------
T ss_pred HHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCcc-----------------------------
Confidence 3345788888888 665544 11223677777788888888876653211
Q ss_pred HHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHH
Q 043490 130 LKFSLDAHVYVANALINMYSK-SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQ 206 (589)
Q Consensus 130 ~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~ 206 (589)
.-...+.. |++++|.++.+.+. +...|..+...+.+.++++.|.++|.+.|+++.+..++..
T Consensus 657 -------------~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~ 719 (814)
T 3mkq_A 657 -------------QKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSS 719 (814)
T ss_dssp -------------HHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -------------hheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHH
Confidence 11234556 99999999988774 5678999999999999999999999999988887776653
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.67 E-value=0.036 Score=53.52 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=25.1
Q ss_pred CChhHHHHHHHHHH--HcCC---HHHHHHHHHhC-CCCCCH-HHHHHHHHHH
Q 043490 280 HDLVSWNSILKAYA--LHGQ---AKEALQLFSNM-NVQPDS-ATFVSLLSAC 324 (589)
Q Consensus 280 ~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m-~~~p~~-~t~~~ll~a~ 324 (589)
.+..+|...+.+.. ..+. ..+|..+|++. ...|+. ..+..+.-++
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVD 243 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45556666655433 2232 46788888888 777763 3444433333
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.66 E-value=0.0077 Score=46.13 Aligned_cols=79 Identities=16% Similarity=0.105 Sum_probs=59.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCCh
Q 043490 356 MVDLLGRVGRILEAEKLIREM-PMEP-DSV-IWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSF 432 (589)
Q Consensus 356 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 432 (589)
....+.+.|++++|.+.|++. ...| +.. .|..+..++...|++++|...++++++.+|.+..++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 455677788888888888877 3345 466 88888899999999999999999999999988776632 445
Q ss_pred HHHHHHHHHH
Q 043490 433 NKARLIRKEM 442 (589)
Q Consensus 433 ~~a~~~~~~m 442 (589)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.51 E-value=0.0079 Score=46.44 Aligned_cols=62 Identities=21% Similarity=0.259 Sum_probs=42.5
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 043490 4 STQIYATLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEM 68 (589)
Q Consensus 4 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 68 (589)
++.++..+...+...|++++|...++.+++..| .+..++..+...|.+.|++++|.+.|++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP---DYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445566666777777777777777777776655 55666777777777777777777776654
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.48 E-value=0.0069 Score=46.42 Aligned_cols=59 Identities=20% Similarity=0.149 Sum_probs=54.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCChh-HHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 388 LLGSCRKHGETRLAELAATKLKQLEPGDSL-GFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 388 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
....+...|++++|...++++++.+|.++. .+..++.+|...|++++|.+.+++..+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455678899999999999999999999999 99999999999999999999999987654
No 218
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.41 E-value=0.16 Score=40.67 Aligned_cols=139 Identities=9% Similarity=-0.006 Sum_probs=91.4
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHH
Q 043490 294 LHGQAKEALQLFSNMNVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLI 373 (589)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 373 (589)
-.|..++..++..+.--..+..-|+.++.-....-+-+-..++++.+-+-+ | ...+|++.....-+
T Consensus 19 ldG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----D----------is~C~NlKrVi~C~ 84 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----D----------LDKCQNLKSVVECG 84 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----C----------GGGCSCTHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhc----C----------cHhhhcHHHHHHHH
Confidence 345555666655555111122334434333333334444444444442222 2 23466666666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCc
Q 043490 374 REMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVR 448 (589)
Q Consensus 374 ~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 448 (589)
-.++ .+.......+......|+-+.-.++...+...++.++....-++++|.+.|+..+|.+++.+.-++|++
T Consensus 85 ~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 85 VINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 6664 355566777888999999999999999987777778999999999999999999999999999999985
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.41 E-value=0.048 Score=59.89 Aligned_cols=48 Identities=25% Similarity=0.269 Sum_probs=32.2
Q ss_pred HHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 043490 51 MYAKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHGNAEECFRLFCSLL 100 (589)
Q Consensus 51 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 100 (589)
....+|++++|.++-+.+. +...|..|...+.+.|+++.|.+.|.++.
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3455667777776666553 45677777777777777777777777654
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.25 E-value=0.027 Score=46.75 Aligned_cols=66 Identities=6% Similarity=-0.138 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhcC-C-CChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 380 PDSVIWSVLLGSCRKHG---ETRLAELAATKLKQLE-P-GDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 380 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
++..+.-.+..++.+.+ +.++++.+++.+.+.+ | .+...+..|.-+|.+.|++++|++.++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 56777777777777777 5568888888888877 5 34667778888888888888888888887763
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.87 E-value=0.074 Score=51.40 Aligned_cols=149 Identities=9% Similarity=-0.009 Sum_probs=70.0
Q ss_pred CCCHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHH
Q 043490 213 APDWCTFSIVLKACA-----GLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNS 287 (589)
Q Consensus 213 ~p~~~t~~~ll~a~~-----~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 287 (589)
+.+...|...+.+.. ...+..+|..+|+++++.. |.....+..+.-+|.- ...+. ..+.....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~-------~~~~~---~~~~~~~~- 258 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIV-------RHSQH---PLDEKQLA- 258 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH-------HHHHS---CCCHHHHH-
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH-------HhccC---CCchhhHH-
Confidence 455566666666543 2334677888888888774 4444555544444430 00000 00000000
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCH
Q 043490 288 ILKAYALHGQAKEALQLFSNM-NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRI 366 (589)
Q Consensus 288 li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 366 (589)
....+.+....+ ....+..+|..+...+...|++++|...++++... .|+...|..+...+.-.|++
T Consensus 259 ---------~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~ 326 (372)
T 3ly7_A 259 ---------ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMN 326 (372)
T ss_dssp ---------HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCH
T ss_pred ---------HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCH
Confidence 001122211222 22334445554444444446666666666655433 24444444555555556666
Q ss_pred HHHHHHHHhC-CCCCCHHHH
Q 043490 367 LEAEKLIREM-PMEPDSVIW 385 (589)
Q Consensus 367 ~~A~~~~~~m-~~~p~~~~~ 385 (589)
++|.+.|++. .+.|...+|
T Consensus 327 ~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 327 REAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp HHHHHHHHHHHHHSCSHHHH
T ss_pred HHHHHHHHHHHhcCCCcChH
Confidence 6666666554 344554443
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.71 E-value=0.044 Score=50.80 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=68.4
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHhhcCCCC-hhHHHHHHHHhhhc-CChHH
Q 043490 366 ILEAEKLIREM-PMEPD---SVIWSVLLGSCRK-----HGETRLAELAATKLKQLEPGD-SLGFVQMSNIYCLS-GSFNK 434 (589)
Q Consensus 366 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 434 (589)
..+|...+++. .+.|+ ...|..|...|.. -|+.++|.+.|++.++++|+. ..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34455555544 44565 5678888888888 499999999999999999964 99999999999985 99999
Q ss_pred HHHHHHHHhcCCCccCC
Q 043490 435 ARLIRKEMKGSRVRKYP 451 (589)
Q Consensus 435 a~~~~~~m~~~~~~~~~ 451 (589)
+.+.+++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999887665434
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.51 E-value=0.067 Score=41.48 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=46.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 043490 355 CMVDLLGRVGRILEAEKLIREM-----P----MEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQM 422 (589)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 422 (589)
.|...+.+.|+++.|...|+.. + -.+...++..|..++.+.|+++.|...++++.++.|.+..+...+
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3444444444444444444433 0 023467888899999999999999999999999999887664444
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.46 E-value=0.051 Score=41.17 Aligned_cols=66 Identities=14% Similarity=-0.007 Sum_probs=49.0
Q ss_pred CcchHHHHHHHHhhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 043490 349 QLDHYACMVDLLGRVGR---ILEAEKLIREM-PMEPD-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPG 414 (589)
Q Consensus 349 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 414 (589)
+...+..+..++...++ .++|..++++. ...|+ +..+..+...+...|++++|+..++++++.+|+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45556666666654443 67788887777 44554 777777888888999999999999999998886
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.14 Score=43.65 Aligned_cols=51 Identities=20% Similarity=0.367 Sum_probs=39.6
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHh
Q 043490 49 INMYAKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHGNAEECFRLFCSLLQ 101 (589)
Q Consensus 49 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 101 (589)
......+|+++.|.++-+++ .+...|..|.....+.|+++-|.+.|.....
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 34455788888888887766 3567888888888888888888888877653
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.04 E-value=0.88 Score=38.71 Aligned_cols=129 Identities=14% Similarity=0.144 Sum_probs=84.7
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 043490 259 HAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNMNVQPDSATFVSLLSACSHAGLVQEGNKVFH 338 (589)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 338 (589)
+....+|+++.|.++-+.+ .+...|..+......+|+.+-|.+.|++.+ | |..+.-.|...|+.+.-.++-+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---D---~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQH---S---FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC---C---HHHHHHHHHHhCCHHHHHHHHH
Confidence 3455788888888887766 466788888888888899888888888872 1 2333334444566666555443
Q ss_pred HhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043490 339 SMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKL 408 (589)
Q Consensus 339 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 408 (589)
....+ | -++.....+.-.|+++++.+++.+.+.-|.... ....+|-.+.|.++.+.+
T Consensus 85 iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 85 IAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 33221 1 355666677788999999999988864333222 123466777777776655
No 227
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.94 E-value=4.3 Score=42.46 Aligned_cols=111 Identities=13% Similarity=0.040 Sum_probs=54.0
Q ss_pred CHHHHHHHHHhC--CCCCCHHHH----HHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHH
Q 043490 297 QAKEALQLFSNM--NVQPDSATF----VSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAE 370 (589)
Q Consensus 297 ~~~~A~~~~~~m--~~~p~~~t~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 370 (589)
+.+.|...|... ....+.... ..+.......+...++...+...... .++.....-.+..-.+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 667777777666 112222222 22222233334234444444443221 122222333333444667777777
Q ss_pred HHHHhCCCCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 043490 371 KLIREMPMEP-D-SVIWSVLLGSCRKHGETRLAELAATKLKQ 410 (589)
Q Consensus 371 ~~~~~m~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 410 (589)
..|+.|+..+ + ....-=+..+....|+.++|..+|+.+.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7777774332 2 22112233455667777777777777754
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.44 E-value=0.15 Score=42.37 Aligned_cols=89 Identities=19% Similarity=0.011 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHH
Q 043490 329 LVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVG---RILEAEKLIREM-PME-P--DSVIWSVLLGSCRKHGETRLA 401 (589)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a 401 (589)
....+++-|....+. + .++..+...+.-++++.+ +++++..++++. ... | ....+-.|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344455555544332 2 255566666666677766 555777777666 222 5 255666677888999999999
Q ss_pred HHHHHHHhhcCCCChhHH
Q 043490 402 ELAATKLKQLEPGDSLGF 419 (589)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~ 419 (589)
.+.++.+++.+|++..+.
T Consensus 91 ~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhcCCCCHHHH
Confidence 999999999999876543
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.81 E-value=0.35 Score=38.57 Aligned_cols=65 Identities=5% Similarity=-0.205 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHH---HHHHHHHHhhcC-C-CChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 380 PDSVIWSVLLGSCRKHGETRL---AELAATKLKQLE-P-GDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 380 p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
|+..+--.+..++.+..+... ++.+++.+.+.+ | ........|+-+|.+.|++++|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444544444433 555555555544 2 2233344555555666666666666555544
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.59 E-value=0.36 Score=44.69 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=58.1
Q ss_pred hcCCHHHHHHHHhhcCCCCh--hHHHHHHHH-HHHc--CC------HHHHHHHHHhC-CCCCC---HHHHHHHHHHHhcc
Q 043490 263 RCGSISLSKQVFDKMTYHDL--VSWNSILKA-YALH--GQ------AKEALQLFSNM-NVQPD---SATFVSLLSACSHA 327 (589)
Q Consensus 263 ~~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g~------~~~A~~~~~~m-~~~p~---~~t~~~ll~a~~~~ 327 (589)
+.|+..+-.+.+.+..+.++ ..|..++.+ ++.. |. ..+|...+++. .+.|+ ...|..+...|...
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHS
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhC
Confidence 34444455555555554333 355555442 3332 22 34455555555 56665 34555565556553
Q ss_pred -----CcHHHHHHHHHHhHHhcCCcc--CcchHHHHHHHHhhc-CCHHHHHHHHHhC
Q 043490 328 -----GLVQEGNKVFHSMLENHGVVP--QLDHYACMVDLLGRV-GRILEAEKLIREM 376 (589)
Q Consensus 328 -----g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~-g~~~~A~~~~~~m 376 (589)
|+.++|.+.|++.++ +.| +..++....+.|++. |+.++|.+.+++.
T Consensus 213 Pp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 666666666666553 244 245555555555553 6666666666554
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.19 E-value=0.4 Score=36.90 Aligned_cols=65 Identities=14% Similarity=-0.021 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-------CCChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 381 DSVIWSVLLGSCRKHGETRLAELAATKLKQLE-------PGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 381 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
+..-+-.|...+...|+++.|...++.+.+.. +....++..|+.+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45556678889999999999999999988742 345677899999999999999999999988753
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.99 E-value=0.79 Score=48.94 Aligned_cols=54 Identities=13% Similarity=0.090 Sum_probs=50.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 390 GSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 390 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
.-|...|+++.|..+.+++...-|.+..+|..|+.+|.+.|+|+.|+-.++.+-
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446778999999999999999999999999999999999999999999999884
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.82 E-value=0.0004 Score=68.43 Aligned_cols=240 Identities=12% Similarity=0.120 Sum_probs=158.8
Q ss_pred ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhC
Q 043490 167 NVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYG 246 (589)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 246 (589)
.+..|..+..+..+.+.+.+|++.|.+.+ |+..|..++.++.+.|.++.-...+....+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~-------------------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~- 112 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD-------------------DPSSYMEVVQAANTSGNWEELVKYLQMARKK- 112 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS-------------------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC-------------------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-
Confidence 34568888888866666666665555554 3345667777888888888777777665554
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-C----------------
Q 043490 247 FEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNM-N---------------- 309 (589)
Q Consensus 247 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---------------- 309 (589)
..++.+-+.|+-+|+|.+++.+-++++. .||+.-...+..-+...|.++.|.-+|..+ +
T Consensus 113 -~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 113 -ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQA 188 (624)
T ss_dssp -CCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGS
T ss_pred -hcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 3455667788889999888765433322 356655666677777777777777777665 1
Q ss_pred ------CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCC
Q 043490 310 ------VQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PM-EPD 381 (589)
Q Consensus 310 ------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~ 381 (589)
..-+..||-.+-.+|...+.+..|.-.--.++ ..+.....++..|-+.|.++|-+.+++.. +. +..
T Consensus 189 AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI------vhadeL~elv~~YE~~G~f~ELIsLlEaglglErAH 262 (624)
T 3lvg_A 189 AVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAH 262 (624)
T ss_dssp STTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH------CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCC
T ss_pred HHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchh
Confidence 12356789999999999988877654433332 23344556788899999999999999876 43 356
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh-hcC-CC------ChhHHHHHHHHhhhcCChHHHHH
Q 043490 382 SVIWSVLLGSCRKHGETRLAELAATKLK-QLE-PG------DSLGFVQMSNIYCLSGSFNKARL 437 (589)
Q Consensus 382 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~-p~------~~~~~~~l~~~~~~~g~~~~a~~ 437 (589)
..+++-|.-.|++.. +++-.+.++... +++ |. ....|.-+.-.|.+-..||.|..
T Consensus 263 mGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 263 MGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 899999999998874 443333332211 223 21 34456677777777777776654
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.42 E-value=2 Score=34.16 Aligned_cols=91 Identities=18% Similarity=-0.026 Sum_probs=59.4
Q ss_pred CcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHH
Q 043490 328 GLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILE---AEKLIREM-PME-P--DSVIWSVLLGSCRKHGETRL 400 (589)
Q Consensus 328 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~ 400 (589)
..+..+.+-|...... | .|+..+--.+.-++.+.....+ ++.+++.. ... | .....-.|.-++.+.|+++.
T Consensus 15 ~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3444455555544332 2 2555555566667777666555 77777766 222 4 23444556778999999999
Q ss_pred HHHHHHHHhhcCCCChhHHH
Q 043490 401 AELAATKLKQLEPGDSLGFV 420 (589)
Q Consensus 401 a~~~~~~~~~~~p~~~~~~~ 420 (589)
|.+.++.+++.+|.|..+..
T Consensus 93 A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHH
Confidence 99999999999998865543
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.23 E-value=4.9 Score=32.26 Aligned_cols=137 Identities=10% Similarity=0.079 Sum_probs=82.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSK 271 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 271 (589)
.-.|..++..++..+.... .+..-|+.++--....-+-+...++++.+=+ --|. ..||++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHH
Confidence 4457777777777776653 2444555555444444444444444433321 1121 2455555555
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 043490 272 QVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNM--NVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGV 346 (589)
Q Consensus 272 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 346 (589)
..+-.+. .+....+.-+..+...|+-++-.+++..+ +.+|++.....+..||.+.|+..++.+++.+.-++ |+
T Consensus 82 ~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 82 ECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 5554443 23344455667777788888888888884 66777777888888888888888888888777554 54
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.04 E-value=5.4 Score=32.35 Aligned_cols=67 Identities=9% Similarity=-0.067 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcCCCC-hhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 379 EPDSVIWSVLLGSCRKHGE---TRLAELAATKLKQLEPGD-SLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 379 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
.|+..+--.+..++.+..+ ..+++.+++.+.+..|.+ ......|+-+|.+.|++++|++..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4666665566667766654 456778888888777743 444557788888999999999888888764
No 237
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.12 E-value=15 Score=34.69 Aligned_cols=160 Identities=10% Similarity=0.041 Sum_probs=98.5
Q ss_pred HHHHHHHHHcCCcHHHHHHH-------HHHcCCHHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHhCcCc--HHH---
Q 043490 171 WNSMIAAFRACKLEAQAIEL-------FAKMKNEEEALFLF----RQLQREGMAPDWCTFSIVLKACAGLVT--ERH--- 234 (589)
Q Consensus 171 ~~~li~~~~~~g~~~~a~~~-------~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~--- 234 (589)
|.++..-|.+++++++|+++ +.+.|+...|-++- +-..+.++++|..+..-++..+..... .+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~f 117 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRF 117 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHH
Confidence 44555667777777777776 46778876665554 555667899999888888877765443 221
Q ss_pred HHHHHHHHHHhC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 043490 235 ASAVHSLIAKYG--FEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNMNVQP 312 (589)
Q Consensus 235 a~~i~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 312 (589)
..+...+-.+.| -.-|......+...|.+.+++.+|+..|-.-..+.+..+..|+.-+...+... .+
T Consensus 118 i~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~-----------e~ 186 (336)
T 3lpz_A 118 VKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH-----------TA 186 (336)
T ss_dssp HHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG-----------GH
T ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc-----------cH
Confidence 222233333333 23467778888999999999999999885433333466666655555444322 12
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043490 313 DSATFVSLLSACSHAGLVQEGNKVFHSMLE 342 (589)
Q Consensus 313 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 342 (589)
|.+.-.+++.- ...+++..|...++...+
T Consensus 187 dlfiaRaVL~y-L~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 PLYCARAVLPY-LLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHHHH-HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhCCHHHHHHHHHHHHH
Confidence 33333344443 335788888877766544
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.88 E-value=3.9 Score=33.55 Aligned_cols=55 Identities=5% Similarity=-0.115 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHH
Q 043490 364 GRILEAEKLIREM---PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGF 419 (589)
Q Consensus 364 g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 419 (589)
++.++|.++|+.+ .-+- ..+|.....--.++|+...|.+++.+.+.+.|.+....
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 5666666666655 1111 67777777777888999999999999988888654443
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.79 E-value=1.5 Score=43.05 Aligned_cols=69 Identities=14% Similarity=0.043 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHh-----cCCCccCCc
Q 043490 384 IWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMK-----GSRVRKYPG 452 (589)
Q Consensus 384 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~ 452 (589)
....++.++...|+++++...++.+...+|-+...|..|+.+|.+.|+..+|.+.|+... +.|+.|.|.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 345567788899999999999999999999999999999999999999999999998765 358877664
No 240
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=87.65 E-value=12 Score=39.19 Aligned_cols=78 Identities=9% Similarity=-0.024 Sum_probs=39.4
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh---cCCHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYAR---CGSIS 268 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~---~g~~~ 268 (589)
.-.|+++.|++.+... ...|.+.+...+.-+.-.+- ...++..- .+ .| ..-+..||..|.+ ..+..
T Consensus 305 lLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~~td~~ 373 (661)
T 2qx5_A 305 LLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFRYSDPR 373 (661)
T ss_dssp HHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTTTCHH
T ss_pred HHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhhcCCHH
Confidence 5667777777766543 34566677666665543332 11111110 00 11 2225567777765 47788
Q ss_pred HHHHHHhhcCCC
Q 043490 269 LSKQVFDKMTYH 280 (589)
Q Consensus 269 ~A~~~~~~~~~~ 280 (589)
+|.++|--+.-+
T Consensus 374 ~Al~Y~~li~l~ 385 (661)
T 2qx5_A 374 VAVEYLVLITLN 385 (661)
T ss_dssp HHHHHHHGGGGS
T ss_pred HHHHHHHHHhcc
Confidence 888877766433
No 241
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.52 E-value=22 Score=34.63 Aligned_cols=88 Identities=13% Similarity=-0.049 Sum_probs=53.8
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC----C-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC---CCChhH----H
Q 043490 355 CMVDLLGRVGRILEAEKLIREM----P-MEPD---SVIWSVLLGSCRKHGETRLAELAATKLKQLE---PGDSLG----F 419 (589)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~m----~-~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~----~ 419 (589)
.++..|...|++.+|.+++.++ . .... ..++..-+..|...+|...+..++..+.... +.++.. .
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5677788888888887777766 1 1111 3345555667778888888888877765422 123322 2
Q ss_pred HHHHHHhh-hcCChHHHHHHHHHH
Q 043490 420 VQMSNIYC-LSGSFNKARLIRKEM 442 (589)
Q Consensus 420 ~~l~~~~~-~~g~~~~a~~~~~~m 442 (589)
..-+.++. ..++|..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 23334455 678888887766544
No 242
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.10 E-value=7.6 Score=29.10 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=42.3
Q ss_pred Hhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043490 148 YSK-SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTF 219 (589)
Q Consensus 148 y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 219 (589)
+.. |++++|..+.+...-||...|-++-. -+.|..+++..-+.++...| .|....|
T Consensus 50 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce---------------~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLAYPDLEPWLALCE---------------YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHTTCHHHHHHHHTTSCCGGGHHHHHHHH---------------HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH---------------HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 444 99999999999999999999998866 56677777777776776655 3443333
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.92 E-value=1.1 Score=36.80 Aligned_cols=55 Identities=7% Similarity=-0.059 Sum_probs=44.8
Q ss_pred HcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCc
Q 043490 394 KHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVR 448 (589)
Q Consensus 394 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 448 (589)
..+|.++|.++|+.++.....-+..|...+.--.+.|+.+.|++++.+....+.+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3478999999999998775444667777778888999999999999998876643
No 244
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.33 E-value=7.2 Score=29.18 Aligned_cols=56 Identities=11% Similarity=0.101 Sum_probs=43.2
Q ss_pred Hhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043490 148 YSK-SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTF 219 (589)
Q Consensus 148 y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 219 (589)
+.. |++++|..+.+...-||...|-++-. -+.|..+++..-+.++...| .|....|
T Consensus 49 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce---------------~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNPWPALEPWFALCE---------------WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHTTCHHHHHGGGTTCCCGGGHHHHHHHH---------------HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH---------------HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 444 99999999999999999999998866 56787787777777777665 3444444
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.19 E-value=22 Score=33.30 Aligned_cols=161 Identities=12% Similarity=0.080 Sum_probs=101.8
Q ss_pred HHHHHHHHHcCCcHHHHHHH-------HHHcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHhCcC-----cHHH
Q 043490 171 WNSMIAAFRACKLEAQAIEL-------FAKMKNEEEALFL----FRQLQREGMAPDWCTFSIVLKACAGLV-----TERH 234 (589)
Q Consensus 171 ~~~li~~~~~~g~~~~a~~~-------~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~~~-----~~~~ 234 (589)
|.++..-|.+++++++|+++ +.+.|+...|-++ .+-..+.++++|......++..+.... ..+-
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~f 115 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDV 115 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHH
Confidence 45566667777777777766 3677887766664 455566788999888888877765432 2233
Q ss_pred HHHHHHHHHHhCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc---CCHHHHHHHHHhCC
Q 043490 235 ASAVHSLIAKYGF--EDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALH---GQAKEALQLFSNMN 309 (589)
Q Consensus 235 a~~i~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~ 309 (589)
..+....-.+.|- .-|+.....+...|.+.|++.+|+..|-.-...|...+..|+.-+... |...++-
T Consensus 116 i~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~d------- 188 (312)
T 2wpv_A 116 ITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVA------- 188 (312)
T ss_dssp HHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHH-------
T ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHH-------
Confidence 3334444444431 247788889999999999999999988744333566666666655554 5544432
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 043490 310 VQPDSATFVSLLSACSHAGLVQEGNKVFHSMLEN 343 (589)
Q Consensus 310 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 343 (589)
...-.+++. |...|+...|..+|+...++
T Consensus 189 ----lf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 189 ----EFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp ----HHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 222223333 33467888888888776543
No 246
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.17 E-value=8.8 Score=28.77 Aligned_cols=86 Identities=16% Similarity=0.237 Sum_probs=61.3
Q ss_pred CcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 043490 230 VTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNM- 308 (589)
Q Consensus 230 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m- 308 (589)
...++|..|-+.+...+. ...+--.-+..+.+.|++++|..+.+....||+.+|-++-. .+.|..+++..-+.++
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456777777777776653 33333334556778999999999999999999999987755 4678888888887677
Q ss_pred -CCCCCHHHHHH
Q 043490 309 -NVQPDSATFVS 319 (589)
Q Consensus 309 -~~~p~~~t~~~ 319 (589)
.-.|....|..
T Consensus 97 ~sg~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQDPRIQTFVN 108 (116)
T ss_dssp TCCCHHHHHHHH
T ss_pred hCCCHHHHHHHH
Confidence 44455555543
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.90 E-value=28 Score=34.61 Aligned_cols=180 Identities=12% Similarity=0.114 Sum_probs=116.4
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh-CCCCcHHHHHHHH----HHHHhc
Q 043490 195 KNEEEALFLFRQLQRE-----GMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKY-GFEDDTVIANALI----HAYARC 264 (589)
Q Consensus 195 g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~li----~~~~~~ 264 (589)
|++++|++.+..+.+. ...........++..|...++++...+.+..+.+. |..+. ....++ ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 5677777766655432 24455677888999999999999988777666543 33222 223333 333223
Q ss_pred CC--HHHHHHHHhhcC---CC-------ChhHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCC---HHHHHHHHHHH
Q 043490 265 GS--ISLSKQVFDKMT---YH-------DLVSWNSILKAYALHGQAKEALQLFSNM-----NVQPD---SATFVSLLSAC 324 (589)
Q Consensus 265 g~--~~~A~~~~~~~~---~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~---~~t~~~ll~a~ 324 (589)
.. .+.-..+.+... +. .......|...|...|++.+|.+++.++ +..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32 233334444433 11 1123456778899999999999999998 33332 23566778889
Q ss_pred hccCcHHHHHHHHHHhHHhc-CCccC----cchHHHHHHHHhhcCCHHHHHHHHHhC
Q 043490 325 SHAGLVQEGNKVFHSMLENH-GVVPQ----LDHYACMVDLLGRVGRILEAEKLIREM 376 (589)
Q Consensus 325 ~~~g~~~~a~~~~~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 376 (589)
...+++..|..++..+..+. ...++ ...|.+++..+...+++.+|.+.|.+.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999998864321 11222 235778888888999999998887766
No 248
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.80 E-value=8.3 Score=28.86 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=61.0
Q ss_pred CcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 043490 230 VTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNM- 308 (589)
Q Consensus 230 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m- 308 (589)
...++|..|-+.+...+. ...+--.-+..+.+.|++++|..+.+....||+.+|-++-. .+.|..+++..-+.++
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356777777777776653 33333334556778999999999999999999999987755 4778888888877677
Q ss_pred -CCCCCHHHHHH
Q 043490 309 -NVQPDSATFVS 319 (589)
Q Consensus 309 -~~~p~~~t~~~ 319 (589)
.-.|....|..
T Consensus 96 ~sg~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSSDPALADFAA 107 (115)
T ss_dssp TCSSHHHHHHHH
T ss_pred hCCCHHHHHHHH
Confidence 44555555543
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.56 E-value=7.4 Score=31.12 Aligned_cols=67 Identities=9% Similarity=-0.067 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcCCC-ChhHHHHHHHHhhhcCChHHHHHHHHHHhcC
Q 043490 379 EPDSVIWSVLLGSCRKHGE---TRLAELAATKLKQLEPG-DSLGFVQMSNIYCLSGSFNKARLIRKEMKGS 445 (589)
Q Consensus 379 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 445 (589)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+|. .......|+-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3454444445555555543 34566667766666653 2444556677777777777777777776653
No 250
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=83.25 E-value=0.0033 Score=62.10 Aligned_cols=189 Identities=15% Similarity=0.152 Sum_probs=111.7
Q ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHc
Q 043490 218 TFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTY--HDLVSWNSILKAYALH 295 (589)
Q Consensus 218 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~ 295 (589)
.|+.+..+..+.+.+.+|.+-| ++ ..|+..|..+|....+.|.+++-.+.+....+ ++...=+.|+-+|++.
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsy---Ik---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSY---IK---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT 129 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSS---CC---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTS
T ss_pred HHHHHHHHHHccCchHHHHHHH---Hh---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhh
Confidence 4555555655555554444332 11 23455566777777777777777777766652 3455556777788887
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHh
Q 043490 296 GQAKEALQLFSNMNVQPDSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIRE 375 (589)
Q Consensus 296 g~~~~A~~~~~~m~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 375 (589)
++..+-.+++ -.||..-...+..-|...|.++.|.-+|..+ . -|..|...+.+.|++..|.+--++
T Consensus 130 ~rL~elEefl----~~~N~A~iq~VGDrcf~e~lYeAAKilys~i-s---------N~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 130 NRLAELEEFI----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-S---------NFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp CSSSTTTSTT----SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS-C---------CCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred CcHHHHHHHH----cCCCcccHHHHHHHHHHccCHHHHHHHHHhC-c---------cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7755433333 2366666667777777777777776666544 1 233334445555555555554443
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHH------------------------------HHHHHHHhhcCCCChhHHHHHHHH
Q 043490 376 MPMEPDSVIWSVLLGSCRKHGETRLA------------------------------ELAATKLKQLEPGDSLGFVQMSNI 425 (589)
Q Consensus 376 m~~~p~~~~~~~ll~~~~~~g~~~~a------------------------------~~~~~~~~~~~p~~~~~~~~l~~~ 425 (589)
. .+..||..+-.+|...+.+..| +.+++..+.++....+.++-|+-.
T Consensus 196 A---ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaIL 272 (624)
T 3lvg_A 196 A---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 272 (624)
T ss_dssp C---CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHH
T ss_pred c---CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3 2466777777777666655554 444444445555566777777777
Q ss_pred hhhc
Q 043490 426 YCLS 429 (589)
Q Consensus 426 ~~~~ 429 (589)
|++-
T Consensus 273 YsKY 276 (624)
T 3lvg_A 273 YSKF 276 (624)
T ss_dssp HHSS
T ss_pred HHhc
Confidence 7765
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.12 E-value=7 Score=29.44 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=38.1
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 043490 375 EMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMS 423 (589)
Q Consensus 375 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 423 (589)
.+.+-|++.+..+.+.||++.+++..|.++++-+...-.+...+|-.++
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3467899999999999999999999999999988754332344555543
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.44 E-value=10 Score=31.65 Aligned_cols=25 Identities=8% Similarity=-0.012 Sum_probs=13.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHh
Q 043490 316 TFVSLLSACSHAGLVQEGNKVFHSM 340 (589)
Q Consensus 316 t~~~ll~a~~~~g~~~~a~~~~~~~ 340 (589)
++..+.+++...+.+..|...|+..
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444555555566666666665554
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.59 E-value=11 Score=31.39 Aligned_cols=113 Identities=14% Similarity=0.066 Sum_probs=60.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCc-------chHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC
Q 043490 316 TFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQL-------DHYACMVDLLGRVGRILEAEKLIREM-------PMEPD 381 (589)
Q Consensus 316 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~ 381 (589)
++..-+..+...|.++.|+-+.+.+....+..|+. .+...+.+++...|++..|...|++. +-.|+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444566667788888877766654433334443 24566778888888888888888774 11111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHH
Q 043490 382 SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEM 442 (589)
Q Consensus 382 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 442 (589)
. ...+ . ....... -... +.+...-.-+..+|.+.|++++|+.+++.+
T Consensus 102 ~--~~~~-~---~~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 V--RPST-G---NSASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred c--cccc-c---ccCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1 1000 0 0000000 0001 223344455777888888888888887765
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.54 E-value=3.7 Score=40.28 Aligned_cols=66 Identities=12% Similarity=0.177 Sum_probs=38.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhH----HhcCCccCcchH
Q 043490 288 ILKAYALHGQAKEALQLFSNM-NVQP-DSATFVSLLSACSHAGLVQEGNKVFHSML----ENHGVVPQLDHY 353 (589)
Q Consensus 288 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~~ 353 (589)
++..+...|++.+|+..++.+ ...| +...+..++.++...|+..+|.+.|+... +..|+.|...+-
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444555556666666555555 3444 45566666666666666666666665542 234777776553
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.52 E-value=9.1 Score=28.84 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 043490 196 NEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIH 259 (589)
Q Consensus 196 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 259 (589)
+.-+..+-++.+....+.|++....+.|.||-+.+++..|.++++-++..- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 444555666666667788888888888888888888888888887776543 333456666554
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.46 E-value=6.7 Score=35.70 Aligned_cols=111 Identities=11% Similarity=0.174 Sum_probs=66.4
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcC
Q 043490 322 SACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM-PMEPD----SVIWSVLLGSCRKHG 396 (589)
Q Consensus 322 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g 396 (589)
....+.|.++++.+....-++. -+-|...-..|+..||-.|+++.|.+-++.. ...|+ ...|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 3455678888888877766654 2336777778888888888888888877766 33454 2334443332
Q ss_pred CHHHHHHHHHHHhhcC-----CCChhHHH-HHHHHh--hhcCChHHHHHHHHHHhc
Q 043490 397 ETRLAELAATKLKQLE-----PGDSLGFV-QMSNIY--CLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 397 ~~~~a~~~~~~~~~~~-----p~~~~~~~-~l~~~~--~~~g~~~~a~~~~~~m~~ 444 (589)
+..-+++..-+ +..+..+. .|+.+. ...|+.++|..+.....+
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 23333333321 12222333 444444 345888888888887754
No 257
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=80.35 E-value=12 Score=39.84 Aligned_cols=117 Identities=12% Similarity=0.127 Sum_probs=72.3
Q ss_pred HHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHh-----CCCC-cH----------H
Q 043490 192 AKMKN-EEEALFLFRQLQREGMAPDWCTFSIVLKACAGLV--TERHASAVHSLIAKY-----GFED-DT----------V 252 (589)
Q Consensus 192 ~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~--~~~~a~~i~~~~~~~-----g~~~-~~----------~ 252 (589)
...++ .+.|+++|+++......-+......++......+ .++...-+++.+... ..++ +. .
T Consensus 259 ~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 259 AITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp HTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 44555 5789999999988642222222233444443333 333333333333211 1121 11 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043490 253 IANALIHAYARCGSISLSKQVFDKMT---YHDLVSWNSILKAYALHGQAKEALQLFSNM 308 (589)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 308 (589)
....=.+.+.+.|+++.|+++-++.. ..+-.+|..|..+|...|+++.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12222445667899999999998876 345689999999999999999999998887
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.38 E-value=64 Score=33.62 Aligned_cols=376 Identities=10% Similarity=-0.010 Sum_probs=196.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhc--cCCCceeHHHHHHHhchh
Q 043490 43 FVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHGNAEECFRLFCSLLQY--FFPNEFSLASVLISCDYL 120 (589)
Q Consensus 43 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p~~~t~~~~l~a~~~~ 120 (589)
..-+.-+..+.+.+++......+.. +..+...--....+....|+..+|....+.+-.. ..|+ .
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~--~----------- 138 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--A----------- 138 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT--H-----------
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcH--H-----------
Confidence 3445556667777888888876665 3234444445667777888887787777776655 2333 2
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHH--------------
Q 043490 121 HGKLVHALALKFSLDAHVYVANALINMYSKSCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQ-------------- 186 (589)
Q Consensus 121 ~~~~~~~~~~~~g~~~~~~~~~~li~~y~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~-------------- 186 (589)
...++....+.|.-.+..++.-+-.++..|+...|..+...++.........++..+-+...+..
T Consensus 139 -c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 217 (618)
T 1qsa_A 139 -CDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQM 217 (618)
T ss_dssp -HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHH
T ss_pred -HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHH
Confidence 23344444555555555566655555555888888887777642221112222222211111111
Q ss_pred ---HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 043490 187 ---AIELFAKMKNEEEALFLFRQLQREGMAPDWCTF----SIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIH 259 (589)
Q Consensus 187 ---a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 259 (589)
++.-+.+. +.+.|..+|....... ..+.... ..+.......+....+...+....... .+.....-.+.
T Consensus 218 ~~~~~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r 293 (618)
T 1qsa_A 218 AAVAFASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVR 293 (618)
T ss_dssp HHHHHHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHH
T ss_pred HHHHHHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHH
Confidence 22222333 6788888888876543 2233222 222223344452334444444443332 33333444445
Q ss_pred HHHhcCCHHHHHHHHhhcCCCC--hhHH-HHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHH
Q 043490 260 AYARCGSISLSKQVFDKMTYHD--LVSW-NSILKAYALHGQAKEALQLFSNM-NVQPDSATFVSLLSACSHAGLVQEGNK 335 (589)
Q Consensus 260 ~~~~~g~~~~A~~~~~~~~~~~--~~~~-~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ll~a~~~~g~~~~a~~ 335 (589)
...+.|+++.|...|+.|.... ..-| -=+..++...|+.++|..+|+++ + +. +|-.++.+ .+.|..-.
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~--~fYg~lAa-~~Lg~~~~--- 365 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QR--GFYPMVAA-QRIGEEYE--- 365 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SC--SHHHHHHH-HHTTCCCC---
T ss_pred HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--ChHHHHHH-HHcCCCCC---
Confidence 5567789999999999887432 1211 12345667789999999988888 4 22 34444322 12221000
Q ss_pred HHHHhHHhcCCccC-cc-----hHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 043490 336 VFHSMLENHGVVPQ-LD-----HYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLK 409 (589)
Q Consensus 336 ~~~~~~~~~~~~p~-~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 409 (589)
+ ....+.+. .. .-..-+..+...|...+|...+....-..+......+.......|..+.+.....+..
T Consensus 366 ----~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~ 440 (618)
T 1qsa_A 366 ----L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (618)
T ss_dssp ----C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred ----C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 00000010 00 1122345677889999998877766213344444455555667888888876665443
Q ss_pred hcCC---CChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCccC
Q 043490 410 QLEP---GDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVRKY 450 (589)
Q Consensus 410 ~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 450 (589)
..+. .-+..|..++.-+++.-.++...-.--...+.+..|.
T Consensus 441 ~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 441 LWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp CTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred hhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 3220 0123466666666666555554433222335555443
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.31 E-value=17 Score=41.40 Aligned_cols=187 Identities=8% Similarity=0.006 Sum_probs=114.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCH------------------
Q 043490 255 NALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNM--NVQPDS------------------ 314 (589)
Q Consensus 255 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~------------------ 314 (589)
..++..+.+.+..+.|.++..-. +.+..+--.+..+|...|++++|.+.|++. ++.++.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccc
Confidence 34566667778777777765544 345555456677888999999999999998 332210
Q ss_pred -----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCcc-C--cchHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHH
Q 043490 315 -----ATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVP-Q--LDHYACMVDLLGRVGRILEAEKLIREMPME-PDSVIW 385 (589)
Q Consensus 315 -----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~ 385 (589)
.=|..++..+.+.+.++.+.++-...++..+-.+ + ...|..+...+...|++++|...+-.++-. --....
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cL 974 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCL 974 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHH
Confidence 1255677777778888888877666554322111 1 125788888999999999999988777311 125667
Q ss_pred HHHHHHHHHcCCHHHHH------------HHHHH-Hhhc-CCCC-hhHHHHHHHHhhhcCChHHHHH-HHHHH
Q 043490 386 SVLLGSCRKHGETRLAE------------LAATK-LKQL-EPGD-SLGFVQMSNIYCLSGSFNKARL-IRKEM 442 (589)
Q Consensus 386 ~~ll~~~~~~g~~~~a~------------~~~~~-~~~~-~p~~-~~~~~~l~~~~~~~g~~~~a~~-~~~~m 442 (589)
..|+...+..|..+.-. .++.. +... ++.+ +..|..|-.-+...|++..|.. +|+..
T Consensus 975 r~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 975 LDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 77777777666554432 22211 1112 2222 2335555555667777766544 34443
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.45 E-value=11 Score=42.87 Aligned_cols=123 Identities=8% Similarity=-0.054 Sum_probs=75.5
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCC------------------
Q 043490 320 LLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM--PME------------------ 379 (589)
Q Consensus 320 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~------------------ 379 (589)
++..+...+..+.+.++.... +.+....-.+..+|..+|++++|.+.|++. ++.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 444455555555554443222 112222233445566677777777777665 111
Q ss_pred -----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-CCCh----hHHHHHHHHhhhcCChHHHHHHHHHHhcCCCc
Q 043490 380 -----PDSVIWSVLLGSCRKHGETRLAELAATKLKQLE-PGDS----LGFVQMSNIYCLSGSFNKARLIRKEMKGSRVR 448 (589)
Q Consensus 380 -----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 448 (589)
.-..-|.-++..+.+++.++.+.++.+.+++.. +++. ..|..+.+.+...|++++|...+-.+.+...+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 012346667778888899999998888887754 3332 14677888889999999998888777654443
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=72.32 E-value=19 Score=28.75 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=38.8
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 043490 374 REMPMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMS 423 (589)
Q Consensus 374 ~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 423 (589)
-.+.+-|++.+..+.+.+|++.+|+..|.++++-+...-.+....|-.++
T Consensus 80 ~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 80 VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 34477899999999999999999999999999998754322344555543
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.86 E-value=18 Score=28.86 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 043490 197 EEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIH 259 (589)
Q Consensus 197 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 259 (589)
.-+..+-++.+....+.|++......|.+|-+.+|+..|.++++-++..- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33445555666666788999999999999999999999999988776543 344556666654
No 263
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=71.41 E-value=49 Score=28.43 Aligned_cols=170 Identities=11% Similarity=0.076 Sum_probs=91.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhch
Q 043490 40 QDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDY 119 (589)
Q Consensus 40 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~ 119 (589)
++..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.|+. ++...+..+..
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~------------------ 91 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK------------------ 91 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT------------------
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc------------------
Confidence 67777778888888888866666666667777877777777888887764 34444444443
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHH
Q 043490 120 LHGKLVHALALKFSLDAHVYVANALINMYSK-SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEE 198 (589)
Q Consensus 120 ~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~ 198 (589)
.++..+-...+....+ ++.+....+.+.+..++...-...+.++ .+.|..
T Consensus 92 ---------------~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL-------------~~~~~~- 142 (211)
T 3ltm_A 92 ---------------DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFAL-------------GEIGDE- 142 (211)
T ss_dssp ---------------CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH-------------HHHCCG-
T ss_pred ---------------CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHH-------------HHcCCH-
Confidence 2334444444455555 5443333344444445554444444444 444432
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 043490 199 EALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARC 264 (589)
Q Consensus 199 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~ 264 (589)
++...+.++.. .++...-...+.++...++. .+...+..+.+. ++..+-...+.++.+.
T Consensus 143 ~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 143 RAVEPLIKALK---DEDGWVRQSAADALGEIGGE-RVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-hHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 23344444432 34555555555555555553 333444444443 2444444444444443
No 264
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=71.16 E-value=27 Score=27.90 Aligned_cols=71 Identities=14% Similarity=0.018 Sum_probs=45.9
Q ss_pred cCcchHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhH
Q 043490 348 PQLDHYACMVDLLGRVGR---ILEAEKLIREM-PMEP--DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLG 418 (589)
Q Consensus 348 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 418 (589)
|+..+--.+.-++.+... ..+++.++++. ...| ....+-.|.-|+.+.|+++.|.+..+.+++.+|.|..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 344443344445555543 33455555555 2234 25556667788999999999999999999999987644
No 265
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.09 E-value=94 Score=30.78 Aligned_cols=181 Identities=10% Similarity=0.090 Sum_probs=99.8
Q ss_pred CcHHHHHHHHHHHHHh-----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHH----HHHcCC
Q 043490 230 VTERHASAVHSLIAKY-----GFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHD---LVSWNSILKA----YALHGQ 297 (589)
Q Consensus 230 ~~~~~a~~i~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~----~~~~g~ 297 (589)
++++.|.+.+-.+.+. .......+...++..+.+.|+++...+.+..+.++. ..+-..|+.. ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6777787777666543 245567778889999999999998877666554221 1222233322 222222
Q ss_pred --HHHHHHHHHhC-CCCCC--------HHHHHHHHHHHhccCcHHHHHHHHHHhHHh-cCCccC---cchHHHHHHHHhh
Q 043490 298 --AKEALQLFSNM-NVQPD--------SATFVSLLSACSHAGLVQEGNKVFHSMLEN-HGVVPQ---LDHYACMVDLLGR 362 (589)
Q Consensus 298 --~~~A~~~~~~m-~~~p~--------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~---~~~~~~li~~~~~ 362 (589)
.+.-+.+.+.. .+... ...-..|...+...|++.+|.+++..+... ++..+. ...+..-+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22223333333 11111 112234556667778888887777776432 222211 2355566677777
Q ss_pred cCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 043490 363 VGRILEAEKLIREM-------PMEPD--SVIWSVLLGSCRKHGETRLAELAATKLKQ 410 (589)
Q Consensus 363 ~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 410 (589)
.+++..|..+++++ +..|+ ...+...+..+...+++.+|-+.|..+.+
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 77777777777665 11122 23444555555666677666666555543
No 266
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=68.80 E-value=54 Score=27.88 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=37.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 043490 40 QDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHGNAEECFRLFCSLL 100 (589)
Q Consensus 40 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 100 (589)
+|..+....+..+.+.|..+....+.+.+..+|...-...+.++.+.|.. ++...+..+.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l 85 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKAL 85 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHH
Confidence 66666677777777777655556666666667766666667777777765 3344444443
No 267
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=68.67 E-value=45 Score=26.96 Aligned_cols=71 Identities=14% Similarity=0.018 Sum_probs=43.8
Q ss_pred cCcchHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhH
Q 043490 348 PQLDHYACMVDLLGRVGR---ILEAEKLIREM-PMEP-D-SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLG 418 (589)
Q Consensus 348 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 418 (589)
|+..+--.+.-++.+... ..+++.++++. ...| + ....-.|.-++.+.|+++.|.+..+.+++.+|.|..+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 333333333444444443 23344454444 1123 2 3344456778999999999999999999999987643
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=66.67 E-value=12 Score=34.07 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=40.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 043490 358 DLLGRVGRILEAEKLIREM-PMEP-DSVIWSVLLGSCRKHGETRLAELAATKLKQLEPG 414 (589)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 414 (589)
..+.+.|.+++|++....- .-.| |...-..|+.-++-.|++++|.+-++...+++|.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 3456778888877766554 3344 4666667777888888888888888888888774
No 269
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=65.85 E-value=1.6e+02 Score=32.28 Aligned_cols=152 Identities=11% Similarity=0.046 Sum_probs=81.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH-HHHH---HHHHHHhccC
Q 043490 256 ALIHAYARCGSISLSKQVFDKMTY--HD-LVSWNSILKAYALHGQAKEALQLFSNMNVQPDS-ATFV---SLLSACSHAG 328 (589)
Q Consensus 256 ~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~-~t~~---~ll~a~~~~g 328 (589)
+|...|.-.|+-+....++..+.+ .+ +.-.-++.-++...|+.+.+..+.+.+...+|. .-|. ++.-+|+..|
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC
Confidence 445556677887777777766542 22 222233444555778888888888877112232 2333 3445777888
Q ss_pred cHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCH-HHHHHHH
Q 043490 329 LVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM--PMEPDSVIWSVLLGSCRKHGET-RLAELAA 405 (589)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~ 405 (589)
+.....+++..+..+ ...++.-...+.-++.-.|+.+.+.++++.+ ...|.+..-.++.-+....|+. ..+...+
T Consensus 575 n~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 575 NNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 988888788887542 1222222222222333456666566666544 2233333333333344434433 4555566
Q ss_pred HHHh
Q 043490 406 TKLK 409 (589)
Q Consensus 406 ~~~~ 409 (589)
..+.
T Consensus 653 ~~L~ 656 (963)
T 4ady_A 653 DPLT 656 (963)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
No 270
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=64.20 E-value=94 Score=29.03 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=43.2
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 377 PMEPD--SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 377 ~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
+++|. .-+..+-+..+.+++|+..|..+.+++++++|... ..+.|.+++..-.+.+
T Consensus 200 ~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 200 KLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 56664 55677888899999999999999999999998432 3456778877766543
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=63.61 E-value=1e+02 Score=29.13 Aligned_cols=75 Identities=9% Similarity=-0.003 Sum_probs=33.2
Q ss_pred ChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHH----HHHHHHHHHHcC-CCCCHHHHHHHHHHHhCcCcHHHHHHHHHH
Q 043490 167 NVISWNSMIAAFRACKLEAQAIELFAKMKNEEE----ALFLFRQLQREG-MAPDWCTFSIVLKACAGLVTERHASAVHSL 241 (589)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~----A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 241 (589)
|......+...|.+.+++.+|..-|.. |.-+. |.-+++.+.+.+ ..+|.+.-..+|. |...+++..|..+++.
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~il-g~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~-yL~l~n~~~A~~~~~~ 212 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLVL-GTKESPEVLARMEYEWYKQDESHTAPLYCARAVLP-YLLVANVRAANTAYRI 212 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTT-SCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH-HHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHh-cCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHH-HHHhCCHHHHHHHHHH
Confidence 444444555555555555555555543 22111 111222222222 1123333333443 3445677777776655
Q ss_pred HH
Q 043490 242 IA 243 (589)
Q Consensus 242 ~~ 243 (589)
..
T Consensus 213 f~ 214 (336)
T 3lpz_A 213 FT 214 (336)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 272
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=62.00 E-value=1.9e+02 Score=31.75 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=21.4
Q ss_pred CcCcHHHHHHHHHHHHHhCCCCcHHHHH--HHHHHHHhcCCHHHHHHHHhhcC
Q 043490 228 GLVTERHASAVHSLIAKYGFEDDTVIAN--ALIHAYARCGSISLSKQVFDKMT 278 (589)
Q Consensus 228 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~ 278 (589)
..|+.+.+..+.+.+.... .|...... ++.-+|+..|+.....+++..+.
T Consensus 536 ~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 4455555555555444321 22222111 22334445555555554555443
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.56 E-value=57 Score=32.19 Aligned_cols=94 Identities=9% Similarity=-0.009 Sum_probs=67.4
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--CCChhH----
Q 043490 350 LDHYACMVDLLGRVGRILEAEKLIREM-----PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQLE--PGDSLG---- 418 (589)
Q Consensus 350 ~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~---- 418 (589)
......+.+.|.+.|++++|.+.+.++ +..--...+-.++..+...+++..+....+++.... .+++..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 346778889999999999999999888 222236778888889999999999999988876532 122222
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 419 FVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 419 ~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
...-+.++...++|.+|.+.|-+..
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHh
Confidence 2233445667889999888876654
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=61.22 E-value=28 Score=31.43 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=13.9
Q ss_pred HHHHHHhc-CCHHHHHHHHhhCCC
Q 043490 143 ALINMYSK-SCADEAWKVFENMEF 165 (589)
Q Consensus 143 ~li~~y~~-g~~~~A~~lf~~m~~ 165 (589)
+.+...++ |+++....+++.-..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~ 30 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGAN 30 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCC
Confidence 33444455 777777777776443
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.37 E-value=98 Score=26.69 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=71.0
Q ss_pred HHHHHHHHhC-CCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhh--cCCCChhHHHHHHHHhhhcCChHHHHHHHH
Q 043490 367 LEAEKLIREM-PMEPDS---VIWSVLLGSCRKHGETRLAELAATKLKQ--LEPGDSLGFVQMSNIYCLSGSFNKARLIRK 440 (589)
Q Consensus 367 ~~A~~~~~~m-~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 440 (589)
+.+...|... ..+-|. ..|-..+..| ..++...+..+|..|.. ++..-+..|...+..+...|++++|.++|+
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444444 334454 4555555544 24456788899999876 445667789999999999999999999999
Q ss_pred HHhcCCCccCCceeeEEECCEEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCcccC
Q 043490 441 EMKGSRVRKYPGLSWIEIENRVHEFASGGKRHPQREAIFKKLEELIGQLKGMGYVPE 497 (589)
Q Consensus 441 ~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd 497 (589)
.=.+++-.| .+.......+...+|.+.+++-|
T Consensus 140 ~GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 140 LGAENNCRP-------------------------YNRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp HHHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCCCCC
Confidence 877776543 23334445677788888877444
No 276
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=55.45 E-value=72 Score=29.74 Aligned_cols=65 Identities=8% Similarity=-0.040 Sum_probs=39.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHhCCCCcHHHHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLV--TERHASAVHSLIAKYGFEDDTVIANAL 257 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~l 257 (589)
...|+.++|.+.++++...... .......+..+.-+.+ ..+....++..+.+.|+-+.......+
T Consensus 177 ~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 177 LLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 7889999999999888531111 1234445555555543 356677788888877765554444443
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=55.34 E-value=27 Score=31.53 Aligned_cols=57 Identities=14% Similarity=0.013 Sum_probs=28.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 043490 10 TLFHACALHGNIKQAMQLHEHMINNFPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMP 69 (589)
Q Consensus 10 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 69 (589)
+.+...++.|+++..+.+++.-... ....+. ...+.+...+..|+.+-+..+++.-.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~ 63 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANV--NFQEEE-GGWTPLHNAVQMSREDIVELLLRHGA 63 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTT-TCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCc--ccccCC-CCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 4455566777776555554421111 000111 12234555566777777777776543
No 278
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=54.96 E-value=1e+02 Score=26.47 Aligned_cols=57 Identities=11% Similarity=0.111 Sum_probs=42.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCc-----HHHHHHHHHHHHHhCCCC
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVT-----ERHASAVHSLIAKYGFED 249 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~i~~~~~~~g~~~ 249 (589)
.+..+.+.|+-.+.+|++.| .|....-..++.+....|. +..|...++.....|.+.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 78899999999999999999 7777777777777766553 444555566666667543
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=53.38 E-value=1.1e+02 Score=26.18 Aligned_cols=186 Identities=11% Similarity=0.084 Sum_probs=99.9
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCC
Q 043490 56 GYLDDARHLFDEMPKRNVVSWTALISGYAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLD 135 (589)
Q Consensus 56 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~ 135 (589)
++.+....+.+.+..+|...-...+..+.+.|.. ++...+..+.. .
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---------------------------------~ 61 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---------------------------------D 61 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---------------------------------C
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---------------------------------C
Confidence 3344444555555667776666677777777764 34444444433 2
Q ss_pred CchhHHHHHHHHHhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 043490 136 AHVYVANALINMYSK-SCADEAWKVFENMEFRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAP 214 (589)
Q Consensus 136 ~~~~~~~~li~~y~~-g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p 214 (589)
++..+-...+..+.+ +..+....+.+.+..+|...-...+.++ .+.+.. ++...+.++.. .+
T Consensus 62 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL-------------~~~~~~-~~~~~L~~~l~---d~ 124 (211)
T 3ltm_A 62 EDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVAL-------------GQIGDE-RAVEPLIKALK---DE 124 (211)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH-------------HHHCCG-GGHHHHHHHTT---CS
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHH-------------HHhCcH-HHHHHHHHHHh---CC
Confidence 344444555555556 5544444455555566666555556666 555553 34444444443 46
Q ss_pred CHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 043490 215 DWCTFSIVLKACAGLVTERHASAVHSLIAKYGFEDDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYAL 294 (589)
Q Consensus 215 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 294 (589)
+...-...+.++...++.+. ...+..+.+ .++..+-...+.++.+.+..+....+...+..++...-...+.++.+
T Consensus 125 ~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGDERA-VEPLIKALK---DEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 66666666677666665432 333333332 45666777777777777774433333333335555555555555554
Q ss_pred cC
Q 043490 295 HG 296 (589)
Q Consensus 295 ~g 296 (589)
.+
T Consensus 201 ~~ 202 (211)
T 3ltm_A 201 HK 202 (211)
T ss_dssp --
T ss_pred cC
Confidence 43
No 280
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=53.27 E-value=1.2e+02 Score=26.93 Aligned_cols=136 Identities=9% Similarity=0.044 Sum_probs=73.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCC----ChhHHHHHHHHHHhcCChHHHHHHHhcCC-CCCcchHHHHHHH
Q 043490 8 YATLFHACALHGNIKQAMQLHEHMINNFPNEPQ----DLFVTNHLINMYAKFGYLDDARHLFDEMP-KRNVVSWTALISG 82 (589)
Q Consensus 8 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~~~~~~~~li~~ 82 (589)
+.--|+.+....++++|..+.+...+...+.++ ........+..-.....-.-+..+.+++. ..+...-...++.
T Consensus 21 ~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 21 GVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILSSNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 445678899999999999999988776211112 11122222222222222222333333332 3345556677889
Q ss_pred HHhCCChhHHHHHHHHHHhccCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhHHHHHHHHHhcCCHHHHHHHHhh
Q 043490 83 YAQHGNAEECFRLFCSLLQYFFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYVANALINMYSKSCADEAWKVFEN 162 (589)
Q Consensus 83 ~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~g~~~~A~~lf~~ 162 (589)
+.+.|+.++|.++|-+.+.. .+...+...+...|+..|..=+....-..+..+.+.|..
T Consensus 101 L~rLg~~~~A~~lfL~~rs~---------------------~i~~~~r~l~~~gd~~~Yi~~Ls~i~Fs~I~~t~~~f~~ 159 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRSN---------------------FIQDLILQIGSVDNPTNYLTQLAVIRFQTIKKTVEDFQD 159 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---------------------HHHHHHHCC--CCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHHH---------------------HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877643 222333333555566666544332211334455555555
Q ss_pred CC
Q 043490 163 ME 164 (589)
Q Consensus 163 m~ 164 (589)
.-
T Consensus 160 ~F 161 (235)
T 2d2s_A 160 IF 161 (235)
T ss_dssp HS
T ss_pred Hh
Confidence 43
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=52.61 E-value=95 Score=25.40 Aligned_cols=80 Identities=10% Similarity=-0.062 Sum_probs=51.0
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCCChhHHHHHHHHhhhcCChHHHHHHHHHHh
Q 043490 367 LEAEKLIREM-PMEPDSVIWSVLLGSCRKHGETRLAELAATKLKQL--EPGDSLGFVQMSNIYCLSGSFNKARLIRKEMK 443 (589)
Q Consensus 367 ~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 443 (589)
+.+.+.|..- ..+.|..-...-+.--... +.+..+|..|... +..-+..|...+..+...|++++|.++++.=.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555544 3344544333222222222 2377888888764 45567778999999999999999999998877
Q ss_pred cCCCcc
Q 043490 444 GSRVRK 449 (589)
Q Consensus 444 ~~~~~~ 449 (589)
+++-.|
T Consensus 129 ~~~A~P 134 (152)
T 4a1g_A 129 QNQAEP 134 (152)
T ss_dssp HTTCBS
T ss_pred HcCCcc
Confidence 766543
No 282
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.85 E-value=82 Score=31.00 Aligned_cols=56 Identities=11% Similarity=-0.003 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC------CChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043490 253 IANALIHAYARCGSISLSKQVFDKMTY------HDLVSWNSILKAYALHGQAKEALQLFSNM 308 (589)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m 308 (589)
+...+.+.|.++|+++.|.+.|.++.. .-+..+-.+|..+...+++..+...+.+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344555666666666666666655541 11223444444444455555555444444
No 283
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=50.64 E-value=1.1e+02 Score=25.72 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=12.8
Q ss_pred HHhcCCCCCcchHHHHHHHHHhCCC
Q 043490 64 LFDEMPKRNVVSWTALISGYAQHGN 88 (589)
Q Consensus 64 ~f~~m~~~~~~~~~~li~~~~~~g~ 88 (589)
+++.+..+|.......+.++.+.|.
T Consensus 19 ~i~~L~~~~~~vr~~A~~~L~~~~~ 43 (201)
T 3ltj_A 19 YIKNLQDDSYYVRRAAAYALGKIGD 43 (201)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 3334444555555555555555554
No 284
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=49.29 E-value=1.7e+02 Score=27.30 Aligned_cols=165 Identities=12% Similarity=0.023 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHH-------HHhCCCCCCHHHHHHHHHHHh
Q 043490 253 IANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQL-------FSNMNVQPDSATFVSLLSACS 325 (589)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-------~~~m~~~p~~~t~~~ll~a~~ 325 (589)
.|.++..=|.+.+++++|.+++..- ...+.++|+...|-++ |++-+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3455666788888999888886542 3445666776665554 233277777777777766654
Q ss_pred ccC-----cHHHHHHHHHHhHHhcCCc--cCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---
Q 043490 326 HAG-----LVQEGNKVFHSMLENHGVV--PQLDHYACMVDLLGRVGRILEAEKLIREMPMEPDSVIWSVLLGSCRKH--- 395 (589)
Q Consensus 326 ~~g-----~~~~a~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~--- 395 (589)
.-. +.+-..+....- .+.|-. -++.....+...|.+.|++.+|...|-.-. .-|...+..++.-+...
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS-~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWS-IKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHH-HHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTC
T ss_pred HCCCCCchHHHHHHHHHHHH-hhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCC
Confidence 422 111112222222 122222 256678888899999999999998776221 11355555555544444
Q ss_pred CCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhc
Q 043490 396 GETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKG 444 (589)
Q Consensus 396 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 444 (589)
|...++-.+ ....+--|.-.|+...|..+++...+
T Consensus 182 ~~~~e~dlf--------------~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 182 IEDSTVAEF--------------FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCHHHHHHH--------------HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCcchHHHH--------------HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 433332111 11223345677889999998887653
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=47.29 E-value=1.2e+02 Score=25.12 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=51.5
Q ss_pred HHHHHHHHhC-CCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHhh--cCCCChhHHHHHHHHhhhcCChHHHHHHHH
Q 043490 367 LEAEKLIREM-PMEPDSV---IWSVLLGSCRKHGETRLAELAATKLKQ--LEPGDSLGFVQMSNIYCLSGSFNKARLIRK 440 (589)
Q Consensus 367 ~~A~~~~~~m-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 440 (589)
+.+...|..- ..+.|.. .|-.++..| ++ ...+|..|.. ++..-+..|...+..+...|++.+|.++|+
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~ 120 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQ 120 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444444 3344644 444444332 33 5667888765 445567789999999999999999999999
Q ss_pred HHhcCCCcc
Q 043490 441 EMKGSRVRK 449 (589)
Q Consensus 441 ~m~~~~~~~ 449 (589)
.=.+++-.|
T Consensus 121 ~Gi~~~A~P 129 (164)
T 2wvi_A 121 EGIQQKAEP 129 (164)
T ss_dssp HHHHTTCBS
T ss_pred HHHHcCCCc
Confidence 887776554
No 286
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=44.33 E-value=14 Score=26.97 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=25.2
Q ss_pred CccHHHHHHHHHHHHHHHHhCCcccCCCcc
Q 043490 472 HPQREAIFKKLEELIGQLKGMGYVPETSLA 501 (589)
Q Consensus 472 ~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~ 501 (589)
.++..+++..+++...+++..|+.||...+
T Consensus 12 rgdlirIl~~ieekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 12 RGDLIRILGEIEEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 356778888889999999999999997555
No 287
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.28 E-value=1.7e+02 Score=32.34 Aligned_cols=91 Identities=8% Similarity=-0.127 Sum_probs=50.7
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCC-----------------
Q 043490 320 LLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM--PMEP----------------- 380 (589)
Q Consensus 320 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p----------------- 380 (589)
++..|...|..+-+.++.... +.++..--.+..+|...|++++|.+.|+++ ++.+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 555566666666555433222 112222224556677778888888888776 2211
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-cCCCCh
Q 043490 381 ------DSVIWSVLLGSCRKHGETRLAELAATKLKQ-LEPGDS 416 (589)
Q Consensus 381 ------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~ 416 (589)
...-|.-++..+-+++-++-+.++.+.+++ ..++|+
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 012455566666677777777777777665 334443
No 288
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=42.73 E-value=1.2e+02 Score=26.25 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHh-CCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 043490 21 IKQAMQLHEHMINN-FPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMP 69 (589)
Q Consensus 21 ~~~a~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 69 (589)
...+..+|..|.+. .. ..-...|......+...|++.+|.++|+.-.
T Consensus 95 ~~~p~~if~~L~~~~IG--~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI 142 (202)
T 3esl_A 95 FHESENTFKYMFNKGIG--TKLSLFYEEFSKLLENAQFFLEAKVLLELGA 142 (202)
T ss_dssp HHHHHHHHHHHHHHTSS--TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCc--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555554 11 0233344455555555555555555555433
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=41.62 E-value=1.4e+02 Score=24.45 Aligned_cols=76 Identities=11% Similarity=0.004 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHH
Q 043490 213 APDWCTFSIVLKACAGLVTERHASAVHSLIAKYGFE-DDTVIANALIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKA 291 (589)
Q Consensus 213 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 291 (589)
+-|..-....|.-.-...+ ...+|..|...|+- .-...|..-...+-..|++.+|.++|+.-.+.+......|...
T Consensus 65 knD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~ 141 (152)
T 4a1g_A 65 HNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQ 141 (152)
T ss_dssp TTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 4455444444433322323 67788888777753 3355667777777788888888888877665544444444333
No 290
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=41.55 E-value=8.8 Score=23.02 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=8.5
Q ss_pred cCCccCCCCC
Q 043490 579 KDRICSCNDY 588 (589)
Q Consensus 579 ~~g~~s~~~~ 588 (589)
.+|.|||+-|
T Consensus 20 ~~~~C~CG~y 29 (42)
T 2l0z_A 20 SLGGCRCGKY 29 (42)
T ss_dssp TTSSBTTTTB
T ss_pred CCceeccccc
Confidence 5899999976
No 291
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.00 E-value=1.8e+02 Score=29.35 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc-chHHH-------HHHHHHhCCChhHHHHHHHHHHhc
Q 043490 42 LFVTNHLINMYAKFGYLDDARHLFDEMPKRNV-VSWTA-------LISGYAQHGNAEECFRLFCSLLQY 102 (589)
Q Consensus 42 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~-~~~~~-------li~~~~~~g~~~~A~~~~~~m~~~ 102 (589)
..++|.|++.|...+.++.|.++..+..-|.. .+-+- +...+.-.+++.+|.+.|....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46788899999999999999999998765532 22222 335566788999999988887765
No 292
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=40.24 E-value=2e+02 Score=25.68 Aligned_cols=48 Identities=10% Similarity=-0.052 Sum_probs=22.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhCC
Q 043490 40 QDLFVTNHLINMYAKFGYLDDARHLFDEMPKRNVVSWTALISGYAQHG 87 (589)
Q Consensus 40 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 87 (589)
++..+-..-+..+.+.|..+....+.+.+..++...-...+.++.+.|
T Consensus 35 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 444444455555555554433333333344455444444445555544
No 293
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=39.51 E-value=1.7e+02 Score=25.11 Aligned_cols=39 Identities=13% Similarity=0.251 Sum_probs=31.4
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcC
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLV 230 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 230 (589)
.+..+.+.|+-.+.+|++.|-.|....-..++.+.-..|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 778999999999999999997777776666666665544
No 294
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=38.91 E-value=1.9e+02 Score=24.90 Aligned_cols=152 Identities=11% Similarity=-0.020 Sum_probs=81.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHh-CCCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhC
Q 043490 11 LFHACALHGNIKQAMQLHEHMINN-FPNEPQDLFVTNHLINMYAKFGYLDDARHLFDEMPKRN---VVSWTALISGYAQH 86 (589)
Q Consensus 11 ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~ 86 (589)
.|...+..|+.+..+.+.+...+. ..-...|.. ..+.+...+..|+.+-+..+++.-..++ ..-++. +...+..
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~ 89 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEH 89 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCccccc-CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHc
Confidence 456667789999888888876655 110011222 2234555667889888888887544433 222333 3344567
Q ss_pred CChhHHHHHHHHHHh---c-cCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhH---HHHHHHHHhc-CCHHHHHH
Q 043490 87 GNAEECFRLFCSLLQ---Y-FFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYV---ANALINMYSK-SCADEAWK 158 (589)
Q Consensus 87 g~~~~A~~~~~~m~~---~-~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~---~~~li~~y~~-g~~~~A~~ 158 (589)
|+.+-+..+++.... . ...|....+.+..++. ..-..+...+++.|..++... ..+.+...++ |+.+-+.-
T Consensus 90 ~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~-~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 168 (241)
T 1k1a_A 90 RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN-TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168 (241)
T ss_dssp TCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHH-HTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHH-cCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHH
Confidence 777665555554432 1 2223333333333332 122344555666676554322 2334444555 88888887
Q ss_pred HHhhCCC
Q 043490 159 VFENMEF 165 (589)
Q Consensus 159 lf~~m~~ 165 (589)
+++.-..
T Consensus 169 Ll~~g~~ 175 (241)
T 1k1a_A 169 LLQHGAN 175 (241)
T ss_dssp HHHTTCC
T ss_pred HHHcCCC
Confidence 7776443
No 295
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=37.83 E-value=10 Score=25.91 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=17.9
Q ss_pred ceEEEecCCccccccCCccCCC
Q 043490 565 KEIVVRDSNRFHHFKDRICSCN 586 (589)
Q Consensus 565 ~~~~~~~~~~~h~~~~g~~s~~ 586 (589)
..|=+.|.+..|+|+||+-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4567899999999999986543
No 296
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=36.36 E-value=81 Score=28.71 Aligned_cols=116 Identities=11% Similarity=0.083 Sum_probs=59.0
Q ss_pred ccCcHHHHHHHHHHhHHhcCCccCcc---hHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHH
Q 043490 326 HAGLVQEGNKVFHSMLENHGVVPQLD---HYACMVDLLGRVGRILEAEKLIREMPMEPDS-VIWSVLLGSCRKHGETRLA 401 (589)
Q Consensus 326 ~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~-~~~~~ll~~~~~~g~~~~a 401 (589)
..|..+-...+++. |..++.. -+.+.+...+..|+.+-+..+++.-....+. .-++ .+......|+.+.+
T Consensus 104 ~~g~~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t-~L~~A~~~g~~~~v 177 (285)
T 3kea_A 104 DSGNMQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLS-CIHITIKNGHVDMM 177 (285)
T ss_dssp HTTCHHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHH-HHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCcc-HHHHHHHcChHHHH
Confidence 44666554444332 4444322 2234555566778877666666654322232 3333 34445577888888
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCccCC
Q 043490 402 ELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVRKYP 451 (589)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 451 (589)
..+++.-...+..+..-....+..-+..|+. ++.+.+.+.|..++.
T Consensus 178 ~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 178 ILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYS 223 (285)
T ss_dssp HHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTT
T ss_pred HHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCC
Confidence 8777775554432322222212222345554 445556667766543
No 297
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=35.60 E-value=2.6e+02 Score=26.96 Aligned_cols=171 Identities=11% Similarity=0.173 Sum_probs=71.4
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCcHH
Q 043490 258 IHAYARCGSISLSKQVFDKMTYHDL---VSWNSILKAYALHGQAKEALQLFSNMNVQP---DSATFVSLLSACSHAGLVQ 331 (589)
Q Consensus 258 i~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~p---~~~t~~~ll~a~~~~g~~~ 331 (589)
+...++.|+.+-+..+++.-..++. ..++ .+...+..|+.+-+..+++.- ..| +....+.+ ...+..|+.+
T Consensus 150 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L-~~A~~~~~~~ 226 (437)
T 1n11_A 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLT-PLHVAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTPL-HIAAKQNQVE 226 (437)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCC-HHHHHHHTTCHHHHHHHGGGT-CCSCCCCTTCCCHH-HHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCC-CCCCCcCCCCCCHH-HHHHHcCCHH
Confidence 3344556777666666654332221 1111 223334556655444333332 222 21112222 2333456665
Q ss_pred HHHHHHHHhHHhcCCccCcc--hHHHHHHHHhhcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043490 332 EGNKVFHSMLENHGVVPQLD--HYACMVDLLGRVGRILEAEKLIREMPMEP---DSVIWSVLLGSCRKHGETRLAELAAT 406 (589)
Q Consensus 332 ~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~ 406 (589)
-...+++ +|..++.. .-...+...++.|+.+-...+++.- ..+ +..-++.| ......|+.+....+++
T Consensus 227 ~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~ 299 (437)
T 1n11_A 227 VARSLLQ-----YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTPL-HLVAQEGHVPVADVLIK 299 (437)
T ss_dssp HHHHHHH-----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHH
T ss_pred HHHHHHH-----cCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcC-CCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHh
Confidence 5544443 23333221 1112233445667766555555443 111 21222222 23345677776666655
Q ss_pred HHhhcCCCChhHHHHHHHHhhhcCChHHHHHHH
Q 043490 407 KLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIR 439 (589)
Q Consensus 407 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 439 (589)
.-...+..+....+.| ..-+..|+.+-+.-++
T Consensus 300 ~g~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll 331 (437)
T 1n11_A 300 HGVMVDATTRMGYTPL-HVASHYGNIKLVKFLL 331 (437)
T ss_dssp HTCCTTCCCSSCCCHH-HHHHHSSCSHHHHHHH
T ss_pred CCccCCCCCCCCCCHH-HHHHHcCcHHHHHHHH
Confidence 5333333222222222 2334566665444433
No 298
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.51 E-value=2e+02 Score=31.71 Aligned_cols=126 Identities=13% Similarity=0.070 Sum_probs=71.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCcHHHHH
Q 043490 257 LIHAYARCGSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEALQLFSNM--NVQPDSATFVSLLSACSHAGLVQEGN 334 (589)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~ll~a~~~~g~~~~a~ 334 (589)
++..+...|..+-|.++..-++ .+...--.+..+|...|++++|.++|++. |+.++...... .+...
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~----------~~~~~ 884 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV----------LREFQ 884 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGG----------GHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccc----------hhhhh
Confidence 5566677788887776555554 34444445667788889999999999888 55432211000 00011
Q ss_pred HHHHHhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCC-C----HHHHHHHHHHHHHcC
Q 043490 335 KVFHSMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM--PMEP-D----SVIWSVLLGSCRKHG 396 (589)
Q Consensus 335 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p-~----~~~~~~ll~~~~~~g 396 (589)
.++... + .-.....-|..++..+-+.+.++-+.++-+.. ...+ | ...|..+..+.+..|
T Consensus 885 ~ll~~~-e--~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 885 EIAEKY-H--HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHT-T--TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hccCcc-c--ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 111110 0 00011225677888888888888887776654 1122 2 346777777766554
No 299
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=35.03 E-value=1.4e+02 Score=28.29 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=10.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHH
Q 043490 78 ALISGYAQHGNAEECFRLFCSL 99 (589)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~m 99 (589)
.++.-|...|+.++|...++++
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHc
Confidence 3444444444444444444443
No 300
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=34.18 E-value=2.3e+02 Score=24.52 Aligned_cols=69 Identities=14% Similarity=0.317 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCc-----HHHHHHHHHHHHH
Q 043490 170 SWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVT-----ERHASAVHSLIAK 244 (589)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~i~~~~~~ 244 (589)
..--+|+++.++ .+..+++.|+-.+.+|++.|-.|....-..++.+.-..|. +..|...++....
T Consensus 34 ~HYd~ISAf~KS----------iRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~ 103 (213)
T 3ctd_A 34 NHFDVISAFIKS----------IRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDR 103 (213)
T ss_dssp CHHHHHHHHHHH----------HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 344456666443 7889999999999999999988877777777777655553 4455555666666
Q ss_pred hCCC
Q 043490 245 YGFE 248 (589)
Q Consensus 245 ~g~~ 248 (589)
.|++
T Consensus 104 iG~P 107 (213)
T 3ctd_A 104 VGFP 107 (213)
T ss_dssp HCTT
T ss_pred hCCC
Confidence 6644
No 301
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=31.97 E-value=2.3e+02 Score=27.35 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=11.1
Q ss_pred HHHHHhcCChHHHHHHHhcC
Q 043490 49 INMYAKFGYLDDARHLFDEM 68 (589)
Q Consensus 49 i~~~~~~g~~~~A~~~f~~m 68 (589)
+..-+..|+++-...+++.-
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~g 37 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQRG 37 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHcC
Confidence 34444556666666666543
No 302
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.60 E-value=1.5e+02 Score=24.50 Aligned_cols=56 Identities=7% Similarity=-0.027 Sum_probs=39.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH-HH-----hCcCcHHHHHHHHHHHHH
Q 043490 188 IELFAKMKNEEEALFLFRQLQREGMAP--DWCTFSIVLK-AC-----AGLVTERHASAVHSLIAK 244 (589)
Q Consensus 188 ~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~-a~-----~~~~~~~~a~~i~~~~~~ 244 (589)
+.+|.. |++-+|-++|+..-.....+ +...|..||. .. .+.|+...|..++.....
T Consensus 40 i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 40 VRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455 99999999999987665455 5566777777 32 356788888888777655
No 303
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=30.46 E-value=61 Score=24.10 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=33.4
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHH
Q 043490 56 GYLDDARHLFDEMPKRNVVSWTALISGYAQHGNAEECFR 94 (589)
Q Consensus 56 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 94 (589)
...+.|+++++.++.+...+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 468999999999999999999999999988787665543
No 304
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=29.93 E-value=3.7e+02 Score=25.56 Aligned_cols=82 Identities=6% Similarity=0.003 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHhCCC
Q 043490 171 WNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLV--TERHASAVHSLIAKYGFE 248 (589)
Q Consensus 171 ~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~ 248 (589)
.+.++.-| ...|+.++|.+.++++...... .......+..+.-+.+ ..+...+++..+.+.|+-
T Consensus 220 i~~lL~EY-------------~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEY-------------LLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHH-------------HHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHh-------------ccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 46677777 7777788888777777532111 2334455555555543 345677777777777766
Q ss_pred CcHHHHHHHHHHHHhcCC
Q 043490 249 DDTVIANALIHAYARCGS 266 (589)
Q Consensus 249 ~~~~~~~~li~~~~~~g~ 266 (589)
+.......+...+....+
T Consensus 286 s~~q~~~Gf~~vl~~ldD 303 (358)
T 3eiq_C 286 TIDQMKRGYERIYNEIPD 303 (358)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccH
Confidence 666666666665555444
No 305
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.23 E-value=1.1e+02 Score=27.26 Aligned_cols=84 Identities=11% Similarity=0.095 Sum_probs=41.7
Q ss_pred HHHHHHcCCHHHHHHHHHhC-----CCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCccCcchHHHHHHH
Q 043490 289 LKAYALHGQAKEALQLFSNM-----NVQP----DSATFVSLLSACSHAGLVQEGNKVFHSMLENHGVVPQLDHYACMVDL 359 (589)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m-----~~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 359 (589)
+..+....++++|.+++++. +.++ +.......+..-.....-.-+..+.+.+ .. .++...-...+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---cCCHHHHHHHHHH
Confidence 44555666666666666655 2222 1122223333333222333333343333 21 3344445566677
Q ss_pred HhhcCCHHHHHHHHHhC
Q 043490 360 LGRVGRILEAEKLIREM 376 (589)
Q Consensus 360 ~~~~g~~~~A~~~~~~m 376 (589)
+.|.|+-++|.++|=+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 77888888888877543
No 306
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=28.61 E-value=1.2e+02 Score=25.34 Aligned_cols=181 Identities=8% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHhc-cCCCceeHHHHHHHhchhhHHHHHHHHHHhcCCCchhH---HHHHHHHHhcCCHHH
Q 043490 80 ISGYAQHGNAEECFRLFCSLLQY-FFPNEFSLASVLISCDYLHGKLVHALALKFSLDAHVYV---ANALINMYSKSCADE 155 (589)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~~l~a~~~~~~~~~~~~~~~~g~~~~~~~---~~~li~~y~~g~~~~ 155 (589)
+...+..|+.+....++..-... ..+|....+.+..++.... ..+...+++.|..++... .+.|..+...|+.+-
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 87 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-IEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEI 87 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Q ss_pred HHHHHhhCC----CCChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCc
Q 043490 156 AWKVFENME----FRNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVT 231 (589)
Q Consensus 156 A~~lf~~m~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 231 (589)
+..+++.-. .+|...++.+..+ +..|+.+-+..+++.-...--.+|..-.+.+..++.....
T Consensus 88 ~~~Ll~~~~~~~~~~~~~g~t~L~~A--------------~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~ 153 (201)
T 3hra_A 88 LAYMLKHATPDLNKHNRYGGNALIPA--------------AEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREG 153 (201)
T ss_dssp HHHHHHHSCCCTTCCCTTSCCSHHHH--------------HHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCC
T ss_pred HHHHHhccCcccccccCCCCcHHHHH--------------HHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccc
Q ss_pred HHHHHHHHHHHHHhCCCCcHHHHH--HHHHHHHhcCCHHHHHHHHh
Q 043490 232 ERHASAVHSLIAKYGFEDDTVIAN--ALIHAYARCGSISLSKQVFD 275 (589)
Q Consensus 232 ~~~a~~i~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~ 275 (589)
...-.++.+.+++.|..++..... +-+....+.|+.+-+.-+++
T Consensus 154 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 154 NQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp SHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred hhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
No 307
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.02 E-value=2.4e+02 Score=22.88 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=41.7
Q ss_pred HHHHHHHHhc-CCHHHHHHHHhhCCCCC---hhHHHHHHHHHHcCCcHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCC
Q 043490 141 ANALINMYSK-SCADEAWKVFENMEFRN---VISWNSMIAAFRACKLEAQAIELFAKMKN--EEEALFLFRQLQREGMAP 214 (589)
Q Consensus 141 ~~~li~~y~~-g~~~~A~~lf~~m~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~g~--~~~A~~~~~~m~~~g~~p 214 (589)
.+.++.-|.. |+.++|.+.++++..|. .+...++..++ -+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~al-------------E~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVL-------------ESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHH-------------HCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHH-------------cCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4678888888 99999999999997662 23344444554 43222 345667788887776544
Q ss_pred CH
Q 043490 215 DW 216 (589)
Q Consensus 215 ~~ 216 (589)
..
T Consensus 79 ~~ 80 (152)
T 2ion_A 79 ID 80 (152)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 308
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=27.12 E-value=4.3e+02 Score=25.46 Aligned_cols=279 Identities=11% Similarity=0.060 Sum_probs=140.1
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHhhCCC--------CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043490 140 VANALINMYSK-SCADEAWKVFENMEF--------RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQRE 210 (589)
Q Consensus 140 ~~~~li~~y~~-g~~~~A~~lf~~m~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~ 210 (589)
....|...|.+ |+.++...++..... +....-..++..+... .+..+.-.++..+..+.
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~------------~~~~~~~~~~~~~~~~~ 88 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDM------------DAGTGIEVQLCKDCIEW 88 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTS------------CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcC------------CCcHHHHHHHHHHHHHH
Confidence 34567788888 999988888877653 1223345566655221 12223333333333321
Q ss_pred CCCCCHHHH------HHHHHHHhCcCcHHHHHHHHHHHHHhCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHhhcC-
Q 043490 211 GMAPDWCTF------SIVLKACAGLVTERHASAVHSLIAKYGFEDD-----TVIANALIHAYARCGSISLSKQVFDKMT- 278 (589)
Q Consensus 211 g~~p~~~t~------~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~- 278 (589)
.- -+..+| .-+...+...|++.+|..++..+.+.--..| ..++-.-+.+|...+++.++...+....
T Consensus 89 a~-~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 89 AK-QEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 10 011112 1455666777777777777766655311111 3345555667777778777776665543
Q ss_pred -----CCChhHHHH--H--HHHHH-HcCCHHHHHHHHHhC--C---CC-CC---HHHHHHHHHHHhccCcHHHHHHHH-H
Q 043490 279 -----YHDLVSWNS--I--LKAYA-LHGQAKEALQLFSNM--N---VQ-PD---SATFVSLLSACSHAGLVQEGNKVF-H 338 (589)
Q Consensus 279 -----~~~~~~~~~--l--i~~~~-~~g~~~~A~~~~~~m--~---~~-p~---~~t~~~ll~a~~~~g~~~~a~~~~-~ 338 (589)
.+++..-.. . ...+. ..+++.+|...|-+. + .. |. ...|..| .+.......+- ..++ +
T Consensus 168 ~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~~~r~el-~~~l~~ 245 (394)
T 3txn_A 168 TANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIMLGQSDDV-NQLVSG 245 (394)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHTTCGGGH-HHHHHS
T ss_pred hhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHcCCHHHH-HHHhcc
Confidence 122221111 1 12244 577788877777665 1 11 21 1233322 22222222221 2222 1
Q ss_pred HhHHhcCCccCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 043490 339 SMLENHGVVPQLDHYACMVDLLGRVGRILEAEKLIREM--PMEPDSVIW---SVLLGSCRKHGETRLAELAATKLKQLEP 413 (589)
Q Consensus 339 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~p 413 (589)
.....+ ..|....+..++.+| +.+++.+..++++.. .+..|.... ..|..... ...+.++ ..|
T Consensus 246 ~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i--~~p 313 (394)
T 3txn_A 246 KLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI--IEP 313 (394)
T ss_dssp HHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--HTT
T ss_pred cccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--hHh
Confidence 211222 245555555566654 456777777777765 234455421 11111111 1111112 346
Q ss_pred CChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCC
Q 043490 414 GDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRV 447 (589)
Q Consensus 414 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 447 (589)
-.......++..+.- ..+++...+.+|...|.
T Consensus 314 YsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 314 YSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp CSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred hceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 566667777776654 67899999999987665
No 309
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=26.85 E-value=1.2e+02 Score=26.23 Aligned_cols=57 Identities=9% Similarity=0.007 Sum_probs=25.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 389 LGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 389 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
+......|+.+....+++.-...+..+..-. +-+....+.|+.+-+..+++...+.+
T Consensus 181 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 4444566777766666554322221121111 22333456677766666665544443
No 310
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=26.26 E-value=3.1e+02 Score=25.23 Aligned_cols=11 Identities=9% Similarity=0.075 Sum_probs=6.0
Q ss_pred CCHHHHHHHHh
Q 043490 151 SCADEAWKVFE 161 (589)
Q Consensus 151 g~~~~A~~lf~ 161 (589)
|..+....+++
T Consensus 250 ~~~~~v~~Ll~ 260 (337)
T 4g8k_A 250 KHLGLVQRLLE 260 (337)
T ss_dssp TCHHHHHHHHT
T ss_pred hhhHHHHHHHH
Confidence 55555555554
No 311
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.13 E-value=1.9e+02 Score=27.03 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=42.0
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCC
Q 043490 377 PMEPD--SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSR 446 (589)
Q Consensus 377 ~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 446 (589)
+++|. .-+...-+..+.+++|+..|..+.++++++.|... ..+.|.+++..-.+.+
T Consensus 191 ~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 191 NLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 55664 55677788889999999999999999999987421 3455777777665544
No 312
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=26.09 E-value=74 Score=21.15 Aligned_cols=46 Identities=13% Similarity=-0.025 Sum_probs=24.9
Q ss_pred HHHHHhhcCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCccC
Q 043490 404 AATKLKQLEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVRKY 450 (589)
Q Consensus 404 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 450 (589)
..+.+.++.| +......-.-.-+..|+.+.|+..+-.|..-+..++
T Consensus 12 ~l~~L~emFP-~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 12 DLKAIQDMFP-NMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHCS-SSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHCC-CCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 3444455555 322222222233456778888888877776555443
No 313
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=26.04 E-value=1.9e+02 Score=22.74 Aligned_cols=64 Identities=6% Similarity=-0.062 Sum_probs=39.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHhCCCCcHHHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLV--TERHASAVHSLIAKYGFEDDTVIANA 256 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~ 256 (589)
...|+.++|.+.++++..... -.......+..++-+.+ ..+....++..+.+.|+-+.......
T Consensus 18 ~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~G 83 (129)
T 2nsz_A 18 LLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 83 (129)
T ss_dssp HHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 888999999999988852111 12234455555665543 34667777777777775554444433
No 314
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.16 E-value=2.5e+02 Score=22.01 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=43.0
Q ss_pred HHHHHHHHhc-CCHHHHHHHHhhCCCCC---hhHHHHHHHHHHcCCcHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCC
Q 043490 141 ANALINMYSK-SCADEAWKVFENMEFRN---VISWNSMIAAFRACKLEAQAIELFAKMKN--EEEALFLFRQLQREGMAP 214 (589)
Q Consensus 141 ~~~li~~y~~-g~~~~A~~lf~~m~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~g~--~~~A~~~~~~m~~~g~~p 214 (589)
.+.++.-|.. |+.++|.+.++++..|. .+...++..++ -+.+. .+....++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~al-------------E~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVL-------------ESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHH-------------HCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHH-------------cCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4678888999 99999999999998662 23344455554 44332 356777888888777544
Q ss_pred CH
Q 043490 215 DW 216 (589)
Q Consensus 215 ~~ 216 (589)
..
T Consensus 77 ~~ 78 (129)
T 2nsz_A 77 ID 78 (129)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 315
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.98 E-value=2.7e+02 Score=24.36 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhh--cCCCChhHHHHHHHHhhhcCChHHHHHHHHHHhcCCCc
Q 043490 399 RLAELAATKLKQ--LEPGDSLGFVQMSNIYCLSGSFNKARLIRKEMKGSRVR 448 (589)
Q Consensus 399 ~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 448 (589)
+....+|..|.. ++..-+..|...+..+...|++.+|.++|+.=.+++-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 356678888766 44556778999999999999999999999887766654
No 316
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=23.49 E-value=50 Score=25.73 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=37.8
Q ss_pred CCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHH
Q 043490 181 CKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAV 238 (589)
Q Consensus 181 ~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 238 (589)
.+.+.+|++.-+..++.+-|.++++-..+.| +...|...|-.|-..-+++.+.++
T Consensus 32 DkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 32 DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 3445566666677888888888887777655 566777888888777666655543
No 317
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=23.34 E-value=85 Score=20.88 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHhc-cCCCceeHHHHHHHh
Q 043490 89 AEECFRLFCSLLQY-FFPNEFSLASVLISC 117 (589)
Q Consensus 89 ~~~A~~~~~~m~~~-~~p~~~t~~~~l~a~ 117 (589)
.++|.+.|.+|++. ..+...||.-+++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 46899999999988 777888888887765
No 318
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=22.94 E-value=17 Score=18.84 Aligned_cols=13 Identities=31% Similarity=1.232 Sum_probs=8.5
Q ss_pred cccCCcc--CCCCCC
Q 043490 577 HFKDRIC--SCNDYW 589 (589)
Q Consensus 577 ~~~~g~~--s~~~~~ 589 (589)
+|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 5777777 466555
No 319
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.58 E-value=2.2e+02 Score=23.10 Aligned_cols=64 Identities=6% Similarity=-0.050 Sum_probs=38.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHhCCCCcHHHHHH
Q 043490 192 AKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACAGL--VTERHASAVHSLIAKYGFEDDTVIANA 256 (589)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--~~~~~a~~i~~~~~~~g~~~~~~~~~~ 256 (589)
...|+.++|.+.++++..... -.......+..++-+. ...+....++..+.+.|+-+.......
T Consensus 20 ~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~G 85 (152)
T 2ion_A 20 LLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 85 (152)
T ss_dssp HHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 888999999999988852111 1233445555566553 235566777777777665544444333
No 320
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.28 E-value=1.2e+02 Score=22.48 Aligned_cols=37 Identities=11% Similarity=0.050 Sum_probs=26.7
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCHHHH
Q 043490 265 GSISLSKQVFDKMTYHDLVSWNSILKAYALHGQAKEA 301 (589)
Q Consensus 265 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 301 (589)
...+.|.++++.++.+...+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4567777888877777777788788777666665544
No 321
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=22.19 E-value=4.7e+02 Score=24.21 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=24.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhC
Q 043490 203 LFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKYG 246 (589)
Q Consensus 203 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 246 (589)
+++.+.+.|+.|...++..++..+++.=.++.+..+++.+...|
T Consensus 210 L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g 253 (331)
T 3qye_A 210 LYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQG 253 (331)
T ss_dssp HHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCC
Confidence 44444555555555555555555555555555666666555554
No 322
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=22.01 E-value=24 Score=21.39 Aligned_cols=13 Identities=23% Similarity=0.659 Sum_probs=10.3
Q ss_pred ecccccCCCchhh
Q 043490 544 KNIRICVDCHNFM 556 (589)
Q Consensus 544 ~~~~~c~~~~~~~ 556 (589)
-++|+|.+|+.-.
T Consensus 15 ~~YRvC~~CgkPi 27 (44)
T 2lo3_A 15 IQYRVCEKCGKPL 27 (44)
T ss_dssp CCEEECTTTCCEE
T ss_pred ccchhhcccCCcc
Confidence 4689999998654
No 323
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.83 E-value=94 Score=15.97 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=11.4
Q ss_pred cHHHHHHHHHHHHHHHHh
Q 043490 474 QREAIFKKLEELIGQLKG 491 (589)
Q Consensus 474 ~~~~~~~~l~~l~~~m~~ 491 (589)
.+++.+..++.+.+.+++
T Consensus 2 nadelykeledlqerlrk 19 (27)
T 3twe_A 2 NADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 356667777777666653
No 324
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.58 E-value=3.8e+02 Score=22.91 Aligned_cols=51 Identities=14% Similarity=0.051 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCCC-H-HH-----HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh
Q 043490 366 ILEAEKLIREMPMEPD-S-VI-----WSVLLGSCRKHGETRLAELAATKLKQLEPGDS 416 (589)
Q Consensus 366 ~~~A~~~~~~m~~~p~-~-~~-----~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 416 (589)
++.|+.+++.+.-.-| . .. --..+..|.+.|.+++|.+++++.....+.+.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~ 151 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHM 151 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCch
Confidence 5667777777732322 1 11 12334668899999999999998877665443
No 325
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.13 E-value=1.2e+02 Score=23.50 Aligned_cols=43 Identities=12% Similarity=-0.129 Sum_probs=30.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Q 043490 203 LFRQLQREGMAPDWCTFSIVLKACAGLVTERHASAVHSLIAKY 245 (589)
Q Consensus 203 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 245 (589)
+|+.+....+.|+...-..-|..+...++++.|.++|..+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 5566666667666555555555567889999999999888754
No 326
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.96 E-value=4.9e+02 Score=24.11 Aligned_cols=79 Identities=13% Similarity=0.018 Sum_probs=36.1
Q ss_pred CCHHHHHHHHhhCCC---CChhHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043490 151 SCADEAWKVFENMEF---RNVISWNSMIAAFRACKLEAQAIELFAKMKNEEEALFLFRQLQREGMAPDWCTFSIVLKACA 227 (589)
Q Consensus 151 g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 227 (589)
|+.+....+++.-.. +|..-++.|..+ +..|+.+- .+.+.+.|..++...-.+.+...+
T Consensus 31 g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A--------------~~~g~~~~----v~~Ll~~g~~~~~~~g~t~L~~A~ 92 (364)
T 3ljn_A 31 GQTDEVRRLIETGVSPTIQNRFGCTALHLA--------------CKFGCVDT----AKYLASVGEVHSLWHGQKPIHLAV 92 (364)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--------------HHHCCHHH----HHHHHHHCCCCCCBTTBCHHHHHH
T ss_pred CCHHHHHHHHHcCCCccccCCCCCcHHHHH--------------HHcCCHHH----HHHHHHCCCCccccCCCCHHHHHH
Confidence 777777777765332 233334444444 44555433 233333343333211112233334
Q ss_pred CcCcHHHHHHHHHHHHHhCC
Q 043490 228 GLVTERHASAVHSLIAKYGF 247 (589)
Q Consensus 228 ~~~~~~~a~~i~~~~~~~g~ 247 (589)
..|+.+.+..+++.....|.
T Consensus 93 ~~g~~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 93 MANKTDLVVALVEGAKERGQ 112 (364)
T ss_dssp HTTCHHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHhccccCC
Confidence 45666666655555444443
No 327
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=20.73 E-value=2.5e+02 Score=24.01 Aligned_cols=21 Identities=10% Similarity=-0.099 Sum_probs=11.1
Q ss_pred hCcCcHHHHHHHHHHHHHhCC
Q 043490 227 AGLVTERHASAVHSLIAKYGF 247 (589)
Q Consensus 227 ~~~~~~~~a~~i~~~~~~~g~ 247 (589)
+..|+.+....+++.+.+.|.
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcCC
Confidence 344555555555555544443
No 328
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=20.72 E-value=1.7e+02 Score=25.17 Aligned_cols=85 Identities=12% Similarity=-0.013 Sum_probs=38.8
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHhhhcCChH
Q 043490 357 VDLLGRVGRILEAEKLIREMPMEPD---SVIWSVLLGSCRKHGETRLAELAATKLKQLEPGDSLGFVQMSNIYCLSGSFN 433 (589)
Q Consensus 357 i~~~~~~g~~~~A~~~~~~m~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 433 (589)
+...++.|+.+-+.-+++.- ..++ ..-. +.+....+.|+.+....+++.-...+..|..- .+-+......|+..
T Consensus 148 L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g-~t~l~~A~~~~~~~ 224 (237)
T 3b7b_A 148 LHWAAFSGCVDIAEILLAAK-CDLHAVNIHGD-SPLHIAARENRYDCVVLFLSRDSDVTLKNKEG-ETPLQCASLNSQVW 224 (237)
T ss_dssp HHHHHHHCCHHHHHHHHTTT-CCTTCCCTTCC-CHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTS-CCHHHHSCTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHcC-CCCCCcCCCCC-CHHHHHHHhCCHhHHHHHHHcCCCCCccCCCC-CCHHHHHHHHHHHH
Confidence 33444556665555554432 2221 1111 22333445666665554444322222112111 12334445667777
Q ss_pred HHHHHHHHHhc
Q 043490 434 KARLIRKEMKG 444 (589)
Q Consensus 434 ~a~~~~~~m~~ 444 (589)
.+.++.+.+.+
T Consensus 225 ~~~~l~~~l~d 235 (237)
T 3b7b_A 225 SALQMSKALQD 235 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 77777777654
Done!