BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043492
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VIS|A Chain A, Crystal Structure Of Cutinase Est119 From Thermobifida
Alba Ahk119
pdb|3VIS|B Chain B, Crystal Structure Of Cutinase Est119 From Thermobifida
Alba Ahk119
Length = 306
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 35/193 (18%)
Query: 4 IVFPDNQGKYEVILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLM--PPKGNKEVD 61
I +P Y I PG + + +S + L + +ASHG++V++ + P ++++
Sbjct: 87 IYYPRENNTYGAIAISPGYTGTQSSIAWLGERIASHGFVVIAIDTNTTLDQPDSRARQLN 146
Query: 62 AAAEEINWLPKGLQSHLPENVVADLNYSALMGHSRGGLTAFALAQGYATNPPLGLKFSAL 121
AA ++++ S + + D + A+MGHS GG LA + P
Sbjct: 147 AA---LDYMLTDASSAVRNRI--DASRLAVMGHSMGGGGTLRLA---SQRP--------- 189
Query: 122 VGVDPVAGIPYFHSELDPPILDYESFNFSIPVTVIGTGLGGLAKCVVPCAPEKENHQQFF 181
D A IP L P L+ + ++P +IG +A + P F+
Sbjct: 190 ---DLKAAIP-----LTPWHLNKSWRDITVPTLIIGAEYDTIASVTLHSKP-------FY 234
Query: 182 NRCTS-SDRAHFD 193
N S +D+A+ +
Sbjct: 235 NSIPSPTDKAYLE 247
>pdb|2FX5|A Chain A, Pseudomonas Mendocina Lipase
Length = 258
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 12 KYEVILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYN 50
++ VIL+ GT ++Y+ L H ASHG++V + + N
Sbjct: 48 RHPVILWGNGTGAGPSTYAGLLSHWASHGFVVAAAETSN 86
>pdb|3JVD|A Chain A, Crystal Structure Of Putative Transcription Regulation
Repressor (Laci Family) From Corynebacterium Glutamicum
pdb|3JVD|B Chain B, Crystal Structure Of Putative Transcription Regulation
Repressor (Laci Family) From Corynebacterium Glutamicum
Length = 333
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 23 SVSNTSYSKLFDHLASHGYIVVSPQL--YNLMPPKGNKEVDAAAEEINWLPKGLQSHLPE 80
S+S S K LA GY S L + P+ ++V AAA+E+N++P L L E
Sbjct: 2 SLSAKSSLKEVAELAGVGYATASRALSGKGYVSPQTREKVQAAAKELNYVPNQLAKALRE 61
Query: 81 NVVADLNYSALMG 93
+ SAL+G
Sbjct: 62 ------HRSALVG 68
>pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
pdb|3DC8|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
Length = 490
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 47 QLYNLMPPKGNKEVDAAAEEINWLPKGLQSHLPENVVADLNYSALMGHSRGGLTAFALAQ 106
++ N+ P KG V A A+ + W PK ++ + + ++Y+ G + GL F L +
Sbjct: 371 KILNIYPKKGAILVGADADLVVWDPKRSKTISAKTQQSAIDYNVFEGKTVTGLPRFTLTR 430
Query: 107 G 107
G
Sbjct: 431 G 431
>pdb|4B6G|A Chain A, The Crystal Structure Of The Neisserial Esterase D.
pdb|4B6G|B Chain B, The Crystal Structure Of The Neisserial Esterase D
Length = 283
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 67 INWLPKGLQSHLPENVVADLNYSALMGHSRGGLTAFALA 105
+N LP+ ++ H P N ++MGHS GG A LA
Sbjct: 130 LNELPRLIEKHFPTN-----GKRSIMGHSMGGHGALVLA 163
>pdb|3F96|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
pdb|3F96|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
Length = 383
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 12 KYEVILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPPKGNKEVDAAAEEI---N 68
KY +++F G T YS + LASHG+IV + + + D +A EI +
Sbjct: 97 KYPLVVFSHGLGAFRTLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKS 156
Query: 69 WL 70
WL
Sbjct: 157 WL 158
>pdb|3D59|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D59|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D5E|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3D5E|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3F97|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F97|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F98|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|C Chain C, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F9C|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
pdb|3F9C|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
Length = 383
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 12 KYEVILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPPKGNKEVDAAAEEI---N 68
KY +++F G T YS + LASHG+IV + + + D +A EI +
Sbjct: 97 KYPLVVFSHGLGAFRTLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKS 156
Query: 69 WL 70
WL
Sbjct: 157 WL 158
>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
Length = 371
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 92 MGHSRGGLTAFALAQGYATNPPLGLKFSALVGVDPVAGIPYFHSELD 138
+GHS+G F ++TNP L + + PVA + Y S ++
Sbjct: 142 VGHSQGTTIGFI---AFSTNPSLAKRIKTFYALAPVATVKYTKSLIN 185
>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
Length = 377
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 92 MGHSRGGLTAFALAQGYATNPPLGLKFSALVGVDPVAGIPYFHSELDPPIL 142
+GHS+G F ++TNP L + + PVA + Y + ++ +L
Sbjct: 150 VGHSQGTTIGFI---AFSTNPKLAKRIKTFYALAPVATVKYTETLINKLML 197
>pdb|2VR2|A Chain A, Human Dihydropyrimidinase
Length = 541
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 32/63 (50%)
Query: 45 SPQLYNLMPPKGNKEVDAAAEEINWLPKGLQSHLPENVVADLNYSALMGHSRGGLTAFAL 104
+ +++NL P KG V + A+ + W PKG ++ + +N++ G G+ +
Sbjct: 404 AAKIFNLYPRKGRIAVGSDADIVIWDPKGTRTISAKTHHQAVNFNIFEGMVCHGVPLVTI 463
Query: 105 AQG 107
++G
Sbjct: 464 SRG 466
>pdb|2YRN|A Chain A, Solution Structure Of The Ch Domain From Human Neuron
Navigator 2
Length = 129
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 65 EEINWLPKGLQSHLPENVVADLNYSALMGHSRGGLTAFALAQGYATNPPLGLKFS 119
E+IN PK +S + EN+ A LN+ A G + GL+A + G LGL FS
Sbjct: 66 EDINGCPKN-RSQMIENIDACLNFLAAKGINIQGLSAEEIRNG-NLKAILGLFFS 118
>pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|B Chain B, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|C Chain C, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|D Chain D, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2VM8|A Chain A, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|B Chain B, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|C Chain C, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|D Chain D, Human Crmp-2 Crystallised In The Presence Of Mg
Length = 501
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 11 GKYEVILFFPGTSVSNTSYSKLFDHLASHG------YIVVSP----QLYNLMPPKGNKEV 60
GK L GT+ + S ++D G ++ V+ +++NL P KG V
Sbjct: 355 GKDNFTLIPEGTNGTEERMSVIWDKAVVTGKMDENQFVAVTSTNAAKVFNLYPRKGRIAV 414
Query: 61 DAAAEEINWLPKGLQSHLPENVVADLNYSALMGHSRGGLTAFALAQG 107
+ A+ + W P +++ + + L Y+ G G ++QG
Sbjct: 415 GSDADLVIWDPDSVKTISAKTHNSSLEYNIFEGMECRGSPLVVISQG 461
>pdb|2KJZ|A Chain A, Solution Nmr Structure Of Protein Atc0852 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium (Nesg) Target Att2.
pdb|2KJZ|B Chain B, Solution Nmr Structure Of Protein Atc0852 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium (Nesg) Target Att2
Length = 144
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 108 YATNPPLGLKF-SALVGVDPVAGIPYF 133
Y NPP +F AL+GVDPV P F
Sbjct: 32 YVDNPPASTQFYKALLGVDPVESSPTF 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,250,780
Number of Sequences: 62578
Number of extensions: 400876
Number of successful extensions: 718
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 19
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)