BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043492
(278 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94LX1|CLH1_CITUN Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1
Length = 329
Score = 332 bits (850), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 162/277 (58%), Positives = 202/277 (72%), Gaps = 10/277 (3%)
Query: 2 LFIVFPDNQGKYEVILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPP-KGNKEV 60
L IV P +G + VILF GTS+SN SYSK+FDH+ASHG+IVV+PQLY +PP E+
Sbjct: 53 LIIVTPAEKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNEL 112
Query: 61 DAAAEEINWLPKGLQSHLPENVVADLNYSALMGHSRGGLTAFALAQGYATNPPLGLKFSA 120
++AAE WLP+GLQ +LPEN A+++ A+MGHSRGG TAFAL+ Y F A
Sbjct: 113 NSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGA 164
Query: 121 LVGVDPVAGIPYFHSELDPPILDYESFNFSIPVTVIGTGLGGLAKCVVPCAPEKENHQQF 180
++G+DPVAG + LDP IL ++SF+FSIPVTVIGTGLGG+A+C+ CAPE NH++F
Sbjct: 165 VIGLDPVAGTSK-TTGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEF 223
Query: 181 FNRCTSSDRAHFDATYYGHMDVLDDCPPDLKSLAISKCMCTNGTLPRQPMRQCVSGIAVA 240
FNRC +S RAHF AT YGHMD+LDD P D+KS A+SK C NG R PMR+CVSGI VA
Sbjct: 224 FNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVA 283
Query: 241 FLKAYFDSEGDDFKTILADPSVAPITLGQVEFIPAPS 277
FLK +FD + +DF+ IL DPS API L VE+I A S
Sbjct: 284 FLKDFFDGDAEDFRQILKDPSFAPIKLDSVEYIDASS 320
>sp|Q9MV14|CLH1_CITSI Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1
SV=1
Length = 329
Score = 328 bits (840), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 161/277 (58%), Positives = 201/277 (72%), Gaps = 10/277 (3%)
Query: 2 LFIVFPDNQGKYEVILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPP-KGNKEV 60
L IV P +G + VILF GTS+SN SYSK+FDH+ASHG+IVV+PQLY +PP E+
Sbjct: 53 LIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNEL 112
Query: 61 DAAAEEINWLPKGLQSHLPENVVADLNYSALMGHSRGGLTAFALAQGYATNPPLGLKFSA 120
++AAE WLP+GLQ +LPEN A+++ A+MGHSRGG TAFAL+ Y F A
Sbjct: 113 NSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGA 164
Query: 121 LVGVDPVAGIPYFHSELDPPILDYESFNFSIPVTVIGTGLGGLAKCVVPCAPEKENHQQF 180
++G+DPVAG + LDP IL ++SF+FSIPVTVIGTGLGG+A+C+ CAPE NH++F
Sbjct: 165 VIGLDPVAGTSK-TTGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEF 223
Query: 181 FNRCTSSDRAHFDATYYGHMDVLDDCPPDLKSLAISKCMCTNGTLPRQPMRQCVSGIAVA 240
FNRC +S RAHF AT YGHMD+LDD P D+KS A+SK C NG R PMR+CVSGI VA
Sbjct: 224 FNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVA 283
Query: 241 FLKAYFDSEGDDFKTILADPSVAPITLGQVEFIPAPS 277
FLK +F + +DF+ IL DPS API L VE+I A S
Sbjct: 284 FLKDFFYGDAEDFRQILKDPSFAPIKLDSVEYIDASS 320
>sp|O22527|CLH1_ARATH Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1
Length = 324
Score = 232 bits (592), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/270 (47%), Positives = 167/270 (61%), Gaps = 6/270 (2%)
Query: 1 PLFIVFPDNQGKYEVILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPPKGNKEV 60
P+ I P G Y V+LFF G + N YS + +H+ASHGYI+V+PQL L+PP G EV
Sbjct: 44 PVRITCPTVAGTYPVVLFFHGFYLRNYFYSDVLNHIASHGYILVAPQLCKLLPPGGQVEV 103
Query: 61 DAAAEEINWLPKGLQSHLPENVVADLNYSALMGHSRGGLTAFALAQGYATNPPLGLKFSA 120
D A INW + L++HLP +V A+ Y++L+GHSRGG TAFA+A G+A + FSA
Sbjct: 104 DDAGSVINWASENLKAHLPTSVNANGKYTSLVGHSRGGKTAFAVALGHAATLDPSITFSA 163
Query: 121 LVGVDPVAGIPYFHSELDPPILDY--ESFNFSIPVTVIGTGLGGLAKCVV-PCAPEKENH 177
L+G+DPVAG + DP IL Y ESF IPV V+GTGLG V+ PCAP NH
Sbjct: 164 LIGIDPVAGTNKY-IRTDPHILTYKPESFELDIPVAVVGTGLGPKWNNVMPPCAPTDLNH 222
Query: 178 QQFFNRCTSSDRAHFDATYYGHMDVLDDCPPDLKSLAISKCMCTNGTLPRQPMRQCVSGI 237
++F+ C ++ +AHF A YGHMD+LDD P ++ CMC NG + MR V GI
Sbjct: 223 EEFYKECKAT-KAHFVAADYGHMDMLDDDLPGFVGF-MAGCMCKNGQRKKSEMRSFVGGI 280
Query: 238 AVAFLKAYFDSEGDDFKTILADPSVAPITL 267
VAFLK E + + I+ DPSV+P L
Sbjct: 281 VVAFLKYSLWGEKAEIRLIVKDPSVSPAKL 310
>sp|Q9LE89|CLH0_CHEAL Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1
Length = 347
Score = 215 bits (547), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 126/276 (45%), Positives = 167/276 (60%), Gaps = 17/276 (6%)
Query: 1 PLFIVFPDNQGKYEVILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPPK---GN 57
PL I+ P G Y V+LF GT +SN YS F+++ASHG+IVV+P+L+ L PPK
Sbjct: 62 PLIIISPKEAGVYPVLLFIHGTMLSNEDYSLFFNYIASHGFIVVAPKLFRLFPPKLPSQQ 121
Query: 58 KEVDAAAEEINWLPKGLQSHLPENVV---ADLNYSALMGHSRGGLTAFALAQGYATNPPL 114
E+D AA NW+P LQ L V DL A+ GHSRGG +AFALA G+ +N L
Sbjct: 122 DEIDMAASVANWMPLYLQVVLQRYVTGVEGDLEKLAISGHSRGGKSAFALALGF-SNIKL 180
Query: 115 GLKFSALVGVDPVAGIPYFHSELDPPILDYE--SFNFSIPVTVIGTGLGGLAKCVVPCAP 172
+ FSAL+GVDPVAG L P +L Y+ SFN SIPVTVIG+GLG + CAP
Sbjct: 181 DVTFSALIGVDPVAGRSVDDRTL-PHVLTYKPNSFNLSIPVTVIGSGLG---NHTISCAP 236
Query: 173 EKENHQQFFNRCTSSDRAHFDATYYGHMDVLDDCPPDLKSLAIS-KCMCTNGTLPRQPMR 231
+HQQF++ C + +HF T YGHMD+L++ L +A++ MC P+ MR
Sbjct: 237 NHVSHQQFYDEC-KENSSHFVITKYGHMDMLNEF--RLSPIAVTMSLMCAQSFRPKATMR 293
Query: 232 QCVSGIAVAFLKAYFDSEGDDFKTILADPSVAPITL 267
+ + GI VAFL AYF +G + I+A+ S+AP L
Sbjct: 294 RTLGGIMVAFLNAYFRDDGRQYYAIIANRSLAPTNL 329
>sp|Q9M7I7|CLH2_ARATH Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2
PE=1 SV=1
Length = 318
Score = 184 bits (466), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 109/263 (41%), Positives = 157/263 (59%), Gaps = 18/263 (6%)
Query: 2 LFIVFPDNQGKYEVILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPPKGNKEVD 61
L + P +G Y V++ G + N+ YS+L H++SHG+I+++PQLY++ P E+
Sbjct: 45 LLVATPVEEGDYPVVMLLHGYLLYNSFYSQLMLHVSSHGFILIAPQLYSIAGPDTMDEIK 104
Query: 62 AAAEEINWLPKGLQSHLPENVVADLNYSALMGHSRGGLTAFALAQ---GYATNPPLGLKF 118
+ AE ++WL GL LP V +L+ AL GHSRGG TAFA+A GY++N LK
Sbjct: 105 STAEIMDWLSVGLNHFLPAQVTPNLSKFALSGHSRGGKTAFAVALKKFGYSSN----LKI 160
Query: 119 SALVGVDPVAGIPYFHSELDPPILDYESFNFSI---PVTVIGTGLGGLAKCVV--PCAPE 173
S L+G+DPV G + PP+L Y +F + P+ VIG+GLG A+ + PCAP
Sbjct: 161 STLIGIDPVDGTGK-GKQTPPPVLAYLPNSFDLDKTPILVIGSGLGETARNPLFPPCAPP 219
Query: 174 KENHQQFFNRCTSSDRAHFDATYYGHMDVLDDCPPDLKSLAISKCMCTNGTLPRQPMRQC 233
NH++FF C HF A YGH+D+LDD ++ + S C+C NG R+PMR+
Sbjct: 220 GVNHREFFRECQGP-AWHFVAKDYGHLDMLDDDTKGIRGKS-SYCLCKNGE-ERRPMRRF 276
Query: 234 VSGIAVAFLKAYFDSEGDDFKTI 256
V G+ V+FLKAY EGDD + +
Sbjct: 277 VGGLVVSFLKAYL--EGDDRELV 297
>sp|B3M343|PURA_DROAN Adenylosuccinate synthetase OS=Drosophila ananassae GN=GF17012 PE=3
SV=1
Length = 448
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 173 EKENHQQFFNRCTSSDRAHFDATYYGHMDVLDDCPPDLKSLAISKCMCTNGTLPRQPMRQ 232
E + Q NR SDRAH ++ H+D + + KSL +K G P +
Sbjct: 111 EAKGLQHLENRLIISDRAHLVFDFHQHVDGMQEAEKGGKSLGTTK----KGIGPAYSSKA 166
Query: 233 CVSGIAVAFLKAYFDSEGDDFKTILA 258
+GI V L F+ D FK+I+A
Sbjct: 167 TRNGIRVGELLGDFNLFSDKFKSIVA 192
>sp|B4II68|PURA_DROSE Adenylosuccinate synthetase OS=Drosophila sechellia GN=GM23154 PE=3
SV=1
Length = 447
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 173 EKENHQQFFNRCTSSDRAHFDATYYGHMDVLDDCPPDLKSLAISKCMCTNGTLPRQPMRQ 232
E + Q NR SDRAH ++ H+D + + KSL +K G P +
Sbjct: 110 EAKGLQHLENRLIISDRAHLVFDFHQHVDGMQEAEKGGKSLGTTK----KGIGPAYSSKA 165
Query: 233 CVSGIAVAFLKAYFDSEGDDFKTILA 258
+GI V L F+ + FK+I+A
Sbjct: 166 TRNGIRVGELLGDFNLFSEKFKSIVA 191
>sp|Q9Y0Y2|PURA_DROME Adenylosuccinate synthetase OS=Drosophila melanogaster GN=CG17273
PE=2 SV=1
Length = 447
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 173 EKENHQQFFNRCTSSDRAHFDATYYGHMDVLDDCPPDLKSLAISKCMCTNGTLPRQPMRQ 232
E + Q NR SDRAH ++ H+D + + KSL +K G P +
Sbjct: 110 EAKGLQHLENRLIISDRAHLVFDFHQHVDGMQEAEKGGKSLGTTK----KGIGPAYSSKA 165
Query: 233 CVSGIAVAFLKAYFDSEGDDFKTILA 258
+GI V L F+ + FK+I+A
Sbjct: 166 TRNGIRVGELLGDFNLFSEKFKSIVA 191
>sp|B4PPT4|PURA_DROYA Adenylosuccinate synthetase OS=Drosophila yakuba GN=GE25034 PE=3
SV=1
Length = 506
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 173 EKENHQQFFNRCTSSDRAHFDATYYGHMDVLDDCPPDLKSLAISKCMCTNGTLPRQPMRQ 232
E + Q NR SDRAH ++ H+D + + KSL +K G P +
Sbjct: 169 EAKGLQHLENRLIISDRAHLVFDFHQHVDGMQEAEKGGKSLGTTK----KGIGPAYSSKA 224
Query: 233 CVSGIAVAFLKAYFDSEGDDFKTILA 258
+GI V L F+ + FK+I+A
Sbjct: 225 TRNGIRVGELLGDFNLFSEKFKSIVA 250
>sp|B3P321|PURA_DROER Adenylosuccinate synthetase OS=Drosophila erecta GN=GG15093 PE=3
SV=1
Length = 447
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 173 EKENHQQFFNRCTSSDRAHFDATYYGHMDVLDDCPPDLKSLAISKCMCTNGTLPRQPMRQ 232
E + Q NR SDRAH ++ H+D + + KSL +K G P +
Sbjct: 110 EAKGLQHLENRLIISDRAHLVFDFHQHVDGMQEAEKGGKSLGTTK----KGIGPAYSSKA 165
Query: 233 CVSGIAVAFLKAYFDSEGDDFKTILA 258
+GI V L F+ + FK+I+A
Sbjct: 166 TRNGIRVGELLGDFNLFSEKFKSIVA 191
>sp|B4G518|PURA_DROPE Adenylosuccinate synthetase OS=Drosophila persimilis GN=GL24277
PE=3 SV=1
Length = 448
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 173 EKENHQQFFNRCTSSDRAHFDATYYGHMDVLDDCPPDLKSLAISKCMCTNGTLPRQPMRQ 232
E + Q +R SDRAH ++ H+D + + KSL +K G P +
Sbjct: 111 EAKGLQHLEHRLIISDRAHLVFDFHQHVDGMQEAEKGGKSLGTTK----KGIGPAYSSKA 166
Query: 233 CVSGIAVAFLKAYFDSEGDDFKTILA 258
+GI V L F++ D FK I+A
Sbjct: 167 TRNGIRVGELLGDFNAFSDKFKLIVA 192
>sp|Q299D3|PURA_DROPS Adenylosuccinate synthetase OS=Drosophila pseudoobscura
pseudoobscura GN=GA14431 PE=3 SV=2
Length = 448
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 173 EKENHQQFFNRCTSSDRAHFDATYYGHMDVLDDCPPDLKSLAISKCMCTNGTLPRQPMRQ 232
E + Q +R SDRAH ++ H+D + + KSL +K G P +
Sbjct: 111 EAKGLQHLEHRLIISDRAHLVFDFHQHVDGMQEAEKGGKSLGTTK----KGIGPAYSSKA 166
Query: 233 CVSGIAVAFLKAYFDSEGDDFKTILA 258
+GI V L F++ D FK I+A
Sbjct: 167 TRNGIRVGELLGDFNAFSDKFKLIVA 192
>sp|B4NFS5|PURA_DROWI Adenylosuccinate synthetase OS=Drosophila willistoni GN=GK22693
PE=3 SV=1
Length = 449
Score = 38.9 bits (89), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 182 NRCTSSDRAHFDATYYGHMDVLDDCPPDLKSLAISKCMCTNGTLPRQPMRQCVSGIAVAF 241
NR SDRAH ++ H+D + + KSL +K G P + +GI V
Sbjct: 121 NRLIISDRAHLVFDFHQHVDGMQEAEKGGKSLGTTK----KGIGPAYSSKATRNGIRVGE 176
Query: 242 LKAYFDSEGDDFKTILA 258
L F+ D FK+I+A
Sbjct: 177 LLGDFNLFSDKFKSIVA 193
>sp|B4LWK0|PURA_DROVI Adenylosuccinate synthetase OS=Drosophila virilis GN=GJ24271 PE=3
SV=1
Length = 448
Score = 37.7 bits (86), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 173 EKENHQQFFNRCTSSDRAHFDATYYGHMDVLDDCPPDLKSLAISKCMCTNGTLPRQPMRQ 232
E + Q NR SDRAH ++ H+D + + KSL +K G P +
Sbjct: 111 EAKGLQHLENRLIISDRAHLVFDFHQHVDGMQEAEKGGKSLGTTK----KGIGPAYSSKA 166
Query: 233 CVSGIAVAFLKAYFDSEGDDFKTIL 257
+GI V L F+ + FK+I+
Sbjct: 167 TRNGIRVGELLGDFNLFSEKFKSIV 191
>sp|B4K8W7|PURA_DROMO Adenylosuccinate synthetase OS=Drosophila mojavensis GN=GI22153
PE=3 SV=1
Length = 448
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 173 EKENHQQFFNRCTSSDRAHFDATYYGHMDVLDDCPPDLKSLAISKCMCTNGTLPRQPMRQ 232
E + QQ NR SDRAH ++ +D + + KSL +K G P +
Sbjct: 111 EAKGLQQLENRLIISDRAHLVFDFHQQVDGMQEAEKGGKSLGTTK----KGIGPAYSSKA 166
Query: 233 CVSGIAVAFLKAYFDSEGDDFKTIL 257
+GI V L F+ + FK+I+
Sbjct: 167 TRNGIRVGELLGDFNLFSEKFKSIV 191
>sp|B4JUE4|PURA_DROGR Adenylosuccinate synthetase OS=Drosophila grimshawi GN=GH15927 PE=3
SV=1
Length = 452
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 182 NRCTSSDRAHFDATYYGHMDVLDDCPPDLKSLAISKCMCTNGTLPRQPMRQCVSGIAVAF 241
NR SDRAH ++ H+D + + KSL +K G P + +GI V
Sbjct: 124 NRLIISDRAHLVFDFHQHVDGMQEAEKGGKSLGTTK----KGIGPAYSSKATRNGIRVGE 179
Query: 242 LKAYFDSEGDDFKTIL 257
L F+ + FK+I+
Sbjct: 180 LLGEFNLFSEKFKSIV 195
>sp|A6LPM3|KTHY_CLOB8 Thymidylate kinase OS=Clostridium beijerinckii (strain ATCC 51743 /
NCIMB 8052) GN=tmk PE=3 SV=1
Length = 213
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 33/142 (23%)
Query: 2 LFIVFPDNQGKYEVILFFPGTSVSNTSYSKLFDHLASHGY----------IVVSPQLYNL 51
LFIVF +G + T+ ++D + + + I +S Q+ +
Sbjct: 5 LFIVFEGGEG-----------TGKTTAIDAIYDWITENNFECIKTREPGGIKISEQIRQV 53
Query: 52 MPPKGNKEVDAAAEEINWLPKGLQSHLPENVVADLNYSALMGHSRGGLTAFALAQGYATN 111
+ K NKE+DA E + + Q HL E V+ LN ++ R ++ A QGYA N
Sbjct: 54 ILSKDNKEMDAKTEALLYAAARRQ-HLVEKVIPALNQGVIVLCDRFIDSSLAY-QGYARN 111
Query: 112 PPLGLKFSALVGVDPVAGIPYF 133
+G++ V I F
Sbjct: 112 ----------LGIEEVLSINKF 123
>sp|P63740|CARB_STAAN Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus
(strain N315) GN=carB PE=1 SV=1
Length = 1057
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 15 VILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPPKGNKEVDAAAEEINW-LPKG 73
V++ F G + N L D LA HG ++ L NL + KE +A +IN P+G
Sbjct: 630 VVVQFGGQTAIN-----LADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQG 684
Query: 74 LQSHLPENVVAD 85
+ PE +A+
Sbjct: 685 KSATSPEEALAN 696
>sp|P63739|CARB_STAAM Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=carB PE=1 SV=1
Length = 1057
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 15 VILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPPKGNKEVDAAAEEINW-LPKG 73
V++ F G + N L D LA HG ++ L NL + KE +A +IN P+G
Sbjct: 630 VVVQFGGQTAIN-----LADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQG 684
Query: 74 LQSHLPENVVAD 85
+ PE +A+
Sbjct: 685 KSATSPEEALAN 696
>sp|A5IS88|CARB_STAA9 Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus
(strain JH9) GN=carB PE=3 SV=1
Length = 1057
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 15 VILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPPKGNKEVDAAAEEINW-LPKG 73
V++ F G + N L D LA HG ++ L NL + KE +A +IN P+G
Sbjct: 630 VVVQFGGQTAIN-----LADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQG 684
Query: 74 LQSHLPENVVAD 85
+ PE +A+
Sbjct: 685 KSATSPEEALAN 696
>sp|A6U122|CARB_STAA2 Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus
(strain JH1) GN=carB PE=3 SV=1
Length = 1057
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 15 VILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPPKGNKEVDAAAEEINW-LPKG 73
V++ F G + N L D LA HG ++ L NL + KE +A +IN P+G
Sbjct: 630 VVVQFGGQTAIN-----LADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQG 684
Query: 74 LQSHLPENVVAD 85
+ PE +A+
Sbjct: 685 KSATSPEEALAN 696
>sp|A7X1F4|CARB_STAA1 Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus
(strain Mu3 / ATCC 700698) GN=carB PE=3 SV=1
Length = 1057
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 15 VILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPPKGNKEVDAAAEEINW-LPKG 73
V++ F G + N L D LA HG ++ L NL + KE +A +IN P+G
Sbjct: 630 VVVQFGGQTAIN-----LADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQG 684
Query: 74 LQSHLPENVVAD 85
+ PE +A+
Sbjct: 685 KSATSPEEALAN 696
>sp|Q2YXG5|CARB_STAAB Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=carB PE=3 SV=1
Length = 1057
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 15 VILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPPKGNKEVDAAAEEINW-LPKG 73
V++ F G + N L D LA HG ++ L NL + KE +A +IN P+G
Sbjct: 630 VVVQFGGQTAIN-----LADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQG 684
Query: 74 LQSHLPENVVAD 85
+ PE +A+
Sbjct: 685 KTATSPEEALAN 696
>sp|A8Z3P0|CARB_STAAT Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus
(strain USA300 / TCH1516) GN=carB PE=3 SV=1
Length = 1057
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 15 VILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPPKGNKEVDAAAEEINW-LPKG 73
V++ F G + N L D LA HG ++ L NL + KE +A +IN P+G
Sbjct: 630 VVVQFGGQTAIN-----LADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQG 684
Query: 74 LQSHLPENVVAD 85
+ PE +A+
Sbjct: 685 KTATSPEEALAN 696
>sp|Q6GA10|CARB_STAAS Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus
(strain MSSA476) GN=carB PE=3 SV=1
Length = 1057
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 15 VILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPPKGNKEVDAAAEEINW-LPKG 73
V++ F G + N L D LA HG ++ L NL + KE +A +IN P+G
Sbjct: 630 VVVQFGGQTAIN-----LADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQG 684
Query: 74 LQSHLPENVVAD 85
+ PE +A+
Sbjct: 685 KTATSPEEALAN 696
>sp|A6QGA4|CARB_STAAE Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus
(strain Newman) GN=carB PE=3 SV=1
Length = 1057
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 15 VILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPPKGNKEVDAAAEEINW-LPKG 73
V++ F G + N L D LA HG ++ L NL + KE +A +IN P+G
Sbjct: 630 VVVQFGGQTAIN-----LADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQG 684
Query: 74 LQSHLPENVVAD 85
+ PE +A+
Sbjct: 685 KTATSPEEALAN 696
>sp|Q5HGM9|CARB_STAAC Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus
(strain COL) GN=carB PE=3 SV=1
Length = 1057
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 15 VILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPPKGNKEVDAAAEEINW-LPKG 73
V++ F G + N L D LA HG ++ L NL + KE +A +IN P+G
Sbjct: 630 VVVQFGGQTAIN-----LADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQG 684
Query: 74 LQSHLPENVVAD 85
+ PE +A+
Sbjct: 685 KTATSPEEALAN 696
>sp|Q2FZ72|CARB_STAA8 Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus
(strain NCTC 8325) GN=carB PE=3 SV=1
Length = 1057
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 15 VILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPPKGNKEVDAAAEEINW-LPKG 73
V++ F G + N L D LA HG ++ L NL + KE +A +IN P+G
Sbjct: 630 VVVQFGGQTAIN-----LADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQG 684
Query: 74 LQSHLPENVVAD 85
+ PE +A+
Sbjct: 685 KTATSPEEALAN 696
>sp|Q2FHN5|CARB_STAA3 Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus
(strain USA300) GN=carB PE=3 SV=1
Length = 1057
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 15 VILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPPKGNKEVDAAAEEINW-LPKG 73
V++ F G + N L D LA HG ++ L NL + KE +A +IN P+G
Sbjct: 630 VVVQFGGQTAIN-----LADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQG 684
Query: 74 LQSHLPENVVAD 85
+ PE +A+
Sbjct: 685 KTATSPEEALAN 696
>sp|Q6GHN2|CARB_STAAR Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus
(strain MRSA252) GN=carB PE=3 SV=1
Length = 1057
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 15 VILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPPKGNKEVDAAAEEINW-LPKG 73
V++ F G + N L D LA HG ++ L NL + KE +A +IN P+G
Sbjct: 630 VVVQFGGQTAIN-----LADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQG 684
Query: 74 LQSHLPENVVAD 85
+ PE +A+
Sbjct: 685 KTATSPEEALAN 696
>sp|P58940|CARB_STAAW Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus
(strain MW2) GN=carB PE=3 SV=1
Length = 1057
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 15 VILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPPKGNKEVDAAAEEINW-LPKG 73
V++ F G + N L D LA HG ++ L NL + KE +A +IN P+G
Sbjct: 630 VVVQFGGQTAIN-----LADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQG 684
Query: 74 LQSHLPENVVAD 85
+ PE +A+
Sbjct: 685 KTATSPEEALAN 696
>sp|Q8ZAL4|DLHH_YERPE Putative carboxymethylenebutenolidase OS=Yersinia pestis GN=YPO3787
PE=3 SV=1
Length = 267
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 1 PLFIVFPDNQ-GKYEVILFFPGTSVSNTSYSKLFDHLASHGYIVVSPQLYNLMPPKGNKE 59
P +I PD G Y V++ + + LA GY+ ++P+LY ++
Sbjct: 33 PAYIAKPDQHTGPYPVVIVVQEIFGVHEHIQDICRRLAKQGYLAIAPELY-------FRQ 85
Query: 60 VDAAA-EEINWLPKGLQSHLPEN-VVADLNYSALMGHSRGGLTAFALAQGYATNPPLGLK 117
DA IN L L +P+ V+ DL+++A GG T G+ +
Sbjct: 86 GDAKDYSNINELVNNLVKKVPDRQVLVDLDHTAHWASRHGGDTKKLAITGFCWGGRIAWL 145
Query: 118 FSA 120
++A
Sbjct: 146 YAA 148
>sp|Q59699|HYDA_PSEPU D-hydantoinase/dihydropyrimidinase OS=Pseudomonas putida GN=dht
PE=1 SV=2
Length = 495
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 35 HLASHGYIVVS----PQLYNLMPPKGNKEVDAAAEEINWLPKGLQSHLPENVVADLNYSA 90
L+ H ++ ++ +++NL P KG V A A+ + W P+G ++ + ++++
Sbjct: 358 RLSMHEFVALTSTNTAKIFNLFPRKGAIRVGADADLVLWDPQGTRTLSAQTHHQRVDFNI 417
Query: 91 LMGHSRGGLTAFALAQG 107
G + G+ + ++QG
Sbjct: 418 FEGRTVRGVPSHTISQG 434
>sp|Q9Z9F4|LON_CHLPN Lon protease OS=Chlamydia pneumoniae GN=lon PE=3 SV=1
Length = 819
Score = 31.2 bits (69), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 59/151 (39%), Gaps = 13/151 (8%)
Query: 16 ILFFPGTSVSNTSYSKLFDH---LASHGYIVVSP-QL-YNLMPPKGNKEVDAAAEEINWL 70
+LF +V +T L D L GYI+ Q+ + PK KE+ A E+N+
Sbjct: 503 VLFILTANVLDTIPDPLLDRMEILRLSGYILEEKLQIAKKYLVPKARKEIGLTASEVNFQ 562
Query: 71 PKGLQSHLPENVVADLNYSALMGHSRGGLTAFALAQGYATNPPLGLKFSALVGVDPVAGI 130
P+ L+ ++ N + L G+ + L AL P K + +
Sbjct: 563 PEALK-YMINNYAREAGVRTLNGNIKKVLRKVALKIVQNQEKPKSKKITFKISSKN---- 617
Query: 131 PYFHSELDPPILDYESFNFSIPVTVIGTGLG 161
+ L PI + F S PV V TGL
Sbjct: 618 --LQTYLGKPIFSSDRFYESTPVGV-ATGLA 645
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,359,792
Number of Sequences: 539616
Number of extensions: 5142735
Number of successful extensions: 10223
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 10190
Number of HSP's gapped (non-prelim): 43
length of query: 278
length of database: 191,569,459
effective HSP length: 116
effective length of query: 162
effective length of database: 128,974,003
effective search space: 20893788486
effective search space used: 20893788486
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)