Query 043499
Match_columns 396
No_of_seqs 170 out of 800
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 09:20:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4i1k_A B3 domain-containing tr 100.0 2.3E-31 7.9E-36 233.0 14.8 124 272-396 16-144 (146)
2 1yel_A AT1G16640; CESG, protei 99.9 2.2E-27 7.7E-32 196.3 12.4 100 67-167 5-104 (104)
3 4i1k_A B3 domain-containing tr 99.9 4.1E-22 1.4E-26 174.3 12.1 121 43-165 20-143 (146)
4 1yel_A AT1G16640; CESG, protei 99.9 4E-22 1.4E-26 164.7 10.7 97 297-395 5-102 (104)
5 1wid_A DNA-binding protein RAV 99.8 1.5E-18 5.1E-23 148.9 11.2 99 297-395 8-118 (130)
6 1wid_A DNA-binding protein RAV 99.6 3.8E-15 1.3E-19 127.7 13.2 98 67-164 8-117 (130)
7 2cbp_A Cucumber basic protein; 54.5 7 0.00024 30.7 2.5 31 359-389 10-44 (96)
8 1x9u_A Umecyanin; cupredoxin, 50.0 6.5 0.00022 32.1 1.7 28 362-389 23-50 (116)
9 1oa8_A Ataxin-1; RNA binding, 48.3 4.2 0.00014 34.1 0.3 24 354-377 91-124 (133)
10 1f56_A Plantacyanin; cupredoxi 39.1 19 0.00064 27.9 2.8 28 362-389 12-39 (91)
11 1ws8_A Mavicyanin; oxidized fo 33.9 29 0.001 27.7 3.2 23 132-154 21-43 (109)
12 1ws8_A Mavicyanin; oxidized fo 33.7 23 0.00077 28.4 2.5 28 362-389 23-50 (109)
13 2glw_A PHS018, 92AA long hypot 31.2 62 0.0021 25.0 4.6 78 72-156 6-89 (92)
14 1x9u_A Umecyanin; cupredoxin, 29.5 16 0.00056 29.6 1.0 21 134-154 23-43 (116)
15 3qve_A HMG box-containing prot 27.9 11 0.00039 31.5 -0.3 23 354-376 100-132 (139)
16 1yfb_A Transition state regula 27.7 1E+02 0.0034 21.8 4.8 28 124-154 22-49 (59)
17 2l66_A SSO7C4, transcriptional 27.2 58 0.002 22.2 3.4 23 133-155 18-40 (53)
18 1jer_A Cucumber stellacyanin; 26.4 20 0.00067 30.1 0.9 28 362-389 25-52 (138)
No 1
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.97 E-value=2.3e-31 Score=233.03 Aligned_cols=124 Identities=35% Similarity=0.643 Sum_probs=108.5
Q ss_pred eeecC--CcccCCHHHHHHHHHHhhhcCCCCCEEEEEcccccce--eEEEeCHHHHHhhcCCCCeeEEEEcCCCCEEEEE
Q 043499 272 IFMSE--GHRYLSVEERQSLVTAVRLFKPQNPSFVDILRSKKRY--SYMYVPSKFSKKHLIRGTRSIKLQDSDGKEWPAQ 347 (396)
Q Consensus 272 ~y~~~--~~~~lt~~ek~~a~~~a~~~~s~~P~F~~~m~~s~v~--~~L~IP~~F~~~~l~~~~~~i~L~~~~G~~W~v~ 347 (396)
+|++. .++++|.+|+++|+++|++|+|++|+|+++|++|+++ +.|.||++|+++|||....+|+|+++ |+.|.|+
T Consensus 16 ~~~~~~~~r~~~t~~~k~~a~~~A~~~~s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~~~i~L~~~-gk~W~v~ 94 (146)
T 4i1k_A 16 FYESASARKRTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLA-EKQWPVR 94 (146)
T ss_dssp ----------CCCHHHHHHHHHHHHHCCCSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCCSEEEEEET-TEEEEEE
T ss_pred hhhhhccCCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCCeEEEEEEC-CcEEEEE
Confidence 45543 4568999999999999999999999999999999998 58999999999999999999999998 5999999
Q ss_pred EEeec-ceEeCcCchhhhcccCCCCCCEEEEEEeeCcccEEEEEEEecCC
Q 043499 348 LTWSS-GCGIKGGWPAFSKYKNLKQGHVCVFELIKAKDILLKVSIHASSE 396 (396)
Q Consensus 348 l~~~~-~~~~~~GW~~F~~~N~L~~GD~cvFeli~~~~~~~~VhI~r~~e 396 (396)
+.... .+.|++||+.||++|+|++||+|+|||++..+++|+|||||+.|
T Consensus 95 ~~~~~~~~~ls~GW~~Fv~dn~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 95 CLYKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp EEEETTEEEECTTHHHHHHHTTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred EEEeCCcEEECCchHHHHHHcCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 87643 47899999999999999999999999999888899999999986
No 2
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=2.2e-27 Score=196.34 Aligned_cols=100 Identities=29% Similarity=0.618 Sum_probs=95.0
Q ss_pred CCCCccEEEEccCCCCccceeecChHHHHHhCCCCCceEEEEcCCCCEEEEEEEEECCeEEecccHHHHHhHcCCCCCCE
Q 043499 67 RAETSHFFKVILPSTVQEKKLRIPRKFVKRFGDELSAVATLNVPNGRVWQVGLRKDGRKIWLQDGWDNFAEYHSIAVGYF 146 (396)
Q Consensus 67 ~~~~p~F~kv~~~~~~~~~~L~IP~~F~~~~~~~~~~~v~L~~p~G~~W~V~l~~~~~~~~~~~GW~~F~~~~~L~~GD~ 146 (396)
.+..|+|+|+|++++ ....|.||..|+++|.+..+..|+|++++|++|.|++.+..++++|++||++||.+|+|++||+
T Consensus 5 ~~~~p~F~K~l~~~~-~~~~L~IP~~F~~~~~~~~~~~v~L~~~~G~~W~v~~~~~~~~~~l~~GW~~Fv~~~~L~~GD~ 83 (104)
T 1yel_A 5 DTGEVQFMKPFISEK-SSKSLEIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDGKY 83 (104)
T ss_dssp CCCCEEEEEECCHHH-HTTCEECCHHHHTTCCCCCCSEEEEEETTSCEEEEEEEEETTEEEECTTHHHHHHHHTCCTTCE
T ss_pred CCCCCCEEEEECCCC-ccceEECCHHHHHhcCccCCCEEEEECCCCCEEEEEEEEECCcEEEccChHHHHHHcCCCCCCE
Confidence 578899999999875 3479999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCceEEEEEEcCCCc
Q 043499 147 LVFKYAKNSTFDVLVFDMTAC 167 (396)
Q Consensus 147 lvF~~~g~~~F~V~If~~s~c 167 (396)
|+|+|+|++.|.|+||+.++|
T Consensus 84 lvF~~~~~~~f~V~If~~s~C 104 (104)
T 1yel_A 84 LQFIYDRDRTFYVIIYGHNMC 104 (104)
T ss_dssp EEEEECSSSEEEEEEECSSCC
T ss_pred EEEEEcCCCeEEEEEECCCCC
Confidence 999999999999999999998
No 3
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.87 E-value=4.1e-22 Score=174.28 Aligned_cols=121 Identities=17% Similarity=0.287 Sum_probs=99.4
Q ss_pred eEeeccceeeeccCchhhhccCCCCCCCccEEEEccCCCCcc-ceeecChHHHHHhCCCCCceEEEEcCCCCEEEEEEEE
Q 043499 43 FLIQKGLYTTVANNNVKQMAGGNRRAETSHFFKVILPSTVQE-KKLRIPRKFVKRFGDELSAVATLNVPNGRVWQVGLRK 121 (396)
Q Consensus 43 ~~~~~g~~~~~~~~~~~~ma~~~~~~~~p~F~kv~~~~~~~~-~~L~IP~~F~~~~~~~~~~~v~L~~p~G~~W~V~l~~ 121 (396)
+|-.+.-++......++..|. .+++.+|+|+++|+++++.. ..|.||..|++.|++..+..|+|+++ |++|.|.+..
T Consensus 20 ~~~~r~~~t~~~k~~a~~~A~-~~~s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~~~i~L~~~-gk~W~v~~~~ 97 (146)
T 4i1k_A 20 ASARKRTVTAEERERAINAAK-TFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLA-EKQWPVRCLY 97 (146)
T ss_dssp ------CCCHHHHHHHHHHHH-HCCCSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCCSEEEEEET-TEEEEEEEEE
T ss_pred hccCCCCCCHHHHHHHHHHHH-HcCCCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCCeEEEEEEC-CcEEEEEEEE
Confidence 333344444433444444454 57899999999999999865 47999999999999999999999998 5999999998
Q ss_pred ECCeEEecccHHHHHhHcCCCCCCEEEEEEccCc--eEEEEEEcCC
Q 043499 122 DGRKIWLQDGWDNFAEYHSIAVGYFLVFKYAKNS--TFDVLVFDMT 165 (396)
Q Consensus 122 ~~~~~~~~~GW~~F~~~~~L~~GD~lvF~~~g~~--~F~V~If~~s 165 (396)
.+++.+|++||.+||.+|+|++||+|+|+|+++. .|.|+||+..
T Consensus 98 ~~~~~~ls~GW~~Fv~dn~L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 98 KAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp ETTEEEECTTHHHHHHHTTCCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred eCCcEEECCchHHHHHHcCCCCCCEEEEEEecCCceEEEEEEEecc
Confidence 8888999999999999999999999999999965 8999999874
No 4
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.87 E-value=4e-22 Score=164.72 Aligned_cols=97 Identities=20% Similarity=0.307 Sum_probs=87.1
Q ss_pred CCCCCEEEEEcccccceeEEEeCHHHHHhhcCCCCeeEEEEcCCCCEEEEEEEeec-ceEeCcCchhhhcccCCCCCCEE
Q 043499 297 KPQNPSFVDILRSKKRYSYMYVPSKFSKKHLIRGTRSIKLQDSDGKEWPAQLTWSS-GCGIKGGWPAFSKYKNLKQGHVC 375 (396)
Q Consensus 297 ~s~~P~F~~~m~~s~v~~~L~IP~~F~~~~l~~~~~~i~L~~~~G~~W~v~l~~~~-~~~~~~GW~~F~~~N~L~~GD~c 375 (396)
.++.|.|.++|.+++...+|.||.+|++.|.+..+.+|+|+|++|+.|+|++.... ...|++||++||++|+|++||+|
T Consensus 5 ~~~~p~F~K~l~~~~~~~~L~IP~~F~~~~~~~~~~~v~L~~~~G~~W~v~~~~~~~~~~l~~GW~~Fv~~~~L~~GD~l 84 (104)
T 1yel_A 5 DTGEVQFMKPFISEKSSKSLEIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDGKYL 84 (104)
T ss_dssp CCCCEEEEEECCHHHHTTCEECCHHHHTTCCCCCCSEEEEEETTSCEEEEEEEEETTEEEECTTHHHHHHHHTCCTTCEE
T ss_pred CCCCCCEEEEECCCCccceEECCHHHHHhcCccCCCEEEEECCCCCEEEEEEEEECCcEEEccChHHHHHHcCCCCCCEE
Confidence 46789999999998744889999999999988888999999999999999997653 46899999999999999999999
Q ss_pred EEEEeeCcccEEEEEEEecC
Q 043499 376 VFELIKAKDILLKVSIHASS 395 (396)
Q Consensus 376 vFeli~~~~~~~~VhI~r~~ 395 (396)
+|+|+++. .|+|+||+.+
T Consensus 85 vF~~~~~~--~f~V~If~~s 102 (104)
T 1yel_A 85 QFIYDRDR--TFYVIIYGHN 102 (104)
T ss_dssp EEEECSSS--EEEEEEECSS
T ss_pred EEEEcCCC--eEEEEEECCC
Confidence 99999875 5999999864
No 5
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.77 E-value=1.5e-18 Score=148.94 Aligned_cols=99 Identities=21% Similarity=0.402 Sum_probs=85.2
Q ss_pred CCCCCEEEEEcccccce--eEEEeCHHHHHhhcCCCC-------eeEEEEcCCCCEEEEEEEee---cceEeCcCchhhh
Q 043499 297 KPQNPSFVDILRSKKRY--SYMYVPSKFSKKHLIRGT-------RSIKLQDSDGKEWPAQLTWS---SGCGIKGGWPAFS 364 (396)
Q Consensus 297 ~s~~P~F~~~m~~s~v~--~~L~IP~~F~~~~l~~~~-------~~i~L~~~~G~~W~v~l~~~---~~~~~~~GW~~F~ 364 (396)
.+..|+|.++|++|++. ++|.||+.|+.+|||... .+|+|+|.+|+.|.+++... ..+.|++||..||
T Consensus 8 ~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV 87 (130)
T 1wid_A 8 RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFV 87 (130)
T ss_dssp CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHH
T ss_pred CCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHH
Confidence 46789999999999997 789999999999998765 47899999999999998753 2478999999999
Q ss_pred cccCCCCCCEEEEEEeeCcccEEEEEEEecC
Q 043499 365 KYKNLKQGHVCVFELIKAKDILLKVSIHASS 395 (396)
Q Consensus 365 ~~N~L~~GD~cvFeli~~~~~~~~VhI~r~~ 395 (396)
++|+|++||+|+|++.....-.+.|++.|+.
T Consensus 88 ~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~ 118 (130)
T 1wid_A 88 KEKNLRAGDVVSFSRSNGQDQQLYIGWKSRS 118 (130)
T ss_dssp HHTTCCTTCEEEEEECCSSSCCEEEEEECCC
T ss_pred HHcCCCCCCEEEEEEecCCCcEEEEEEEECC
Confidence 9999999999999999865445777777754
No 6
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.62 E-value=3.8e-15 Score=127.66 Aligned_cols=98 Identities=20% Similarity=0.350 Sum_probs=83.7
Q ss_pred CCCCccEEEEccCCCCcc-ceeecChHHHHHhCCCCC-------ceEEEEcCCCCEEEEEEEEEC--CeEEecccHHHHH
Q 043499 67 RAETSHFFKVILPSTVQE-KKLRIPRKFVKRFGDELS-------AVATLNVPNGRVWQVGLRKDG--RKIWLQDGWDNFA 136 (396)
Q Consensus 67 ~~~~p~F~kv~~~~~~~~-~~L~IP~~F~~~~~~~~~-------~~v~L~~p~G~~W~V~l~~~~--~~~~~~~GW~~F~ 136 (396)
.+..|.|.|+|+++++.. ..|.||..|+..|++.+. ..++|+|+.|+.|.+++.... ..++|+.||..||
T Consensus 8 ~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV 87 (130)
T 1wid_A 8 RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFV 87 (130)
T ss_dssp CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHH
T ss_pred CCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHH
Confidence 466789999999999863 689999999999998665 368899999999999998763 5788999999999
Q ss_pred hHcCCCCCCEEEEEEccC--ceEEEEEEcC
Q 043499 137 EYHSIAVGYFLVFKYAKN--STFDVLVFDM 164 (396)
Q Consensus 137 ~~~~L~~GD~lvF~~~g~--~~F~V~If~~ 164 (396)
++|+|++||+|+|.++.+ ..+.|.+-+.
T Consensus 88 ~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~ 117 (130)
T 1wid_A 88 KEKNLRAGDVVSFSRSNGQDQQLYIGWKSR 117 (130)
T ss_dssp HHTTCCTTCEEEEEECCSSSCCEEEEEECC
T ss_pred HHcCCCCCCEEEEEEecCCCcEEEEEEEEC
Confidence 999999999999999874 4566665544
No 7
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=54.46 E-value=7 Score=30.70 Aligned_cols=31 Identities=23% Similarity=0.509 Sum_probs=23.3
Q ss_pred Cchh----hhcccCCCCCCEEEEEEeeCcccEEEE
Q 043499 359 GWPA----FSKYKNLKQGHVCVFELIKAKDILLKV 389 (396)
Q Consensus 359 GW~~----F~~~N~L~~GD~cvFeli~~~~~~~~V 389 (396)
||.- -+..+...+||+++|.+.....-|++|
T Consensus 10 GW~~~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v 44 (96)
T 2cbp_A 10 GWTFNTESWPKGKRFRAGDILLFNYNPSMHNVVVV 44 (96)
T ss_dssp CSCSSCTTTTTTCCBCTTCEEEEECCTTTCCEEEE
T ss_pred CCccChhhhccCceEcCCCEEEEEecCCCCEEEEE
Confidence 6653 366788999999999998765446665
No 8
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=49.98 E-value=6.5 Score=32.08 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=21.7
Q ss_pred hhhcccCCCCCCEEEEEEeeCcccEEEE
Q 043499 362 AFSKYKNLKQGHVCVFELIKAKDILLKV 389 (396)
Q Consensus 362 ~F~~~N~L~~GD~cvFeli~~~~~~~~V 389 (396)
.-+..+..++||+++|++.....-|++|
T Consensus 23 ~Wa~~~~f~vGD~L~F~y~~~~HsV~~V 50 (116)
T 1x9u_A 23 TWATGKTFRVGDELEFDFAAGMHDVAVV 50 (116)
T ss_dssp HHHTTCCEETTCEEEECCCTTTCCEEEE
T ss_pred hccccccCcCCCEEEEEecCCCCeEEEE
Confidence 3477889999999999998765445655
No 9
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG, RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP: b.145.1.1
Probab=48.27 E-value=4.2 Score=34.12 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=18.5
Q ss_pred eEeCcCchhhh----------cccCCCCCCEEEE
Q 043499 354 CGIKGGWPAFS----------KYKNLKQGHVCVF 377 (396)
Q Consensus 354 ~~~~~GW~~F~----------~~N~L~~GD~cvF 377 (396)
++++.||..|+ .-..|++||+|+-
T Consensus 91 FV~gqGWsSc~P~~T~~~ygL~C~~L~vGDVCls 124 (133)
T 1oa8_A 91 FVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCIS 124 (133)
T ss_dssp EETTTEEEESCHHHHHHHHCCCCEECCTTCEEEE
T ss_pred EEcCCcccccCHhHhhHhhCCcceecccCCEEEe
Confidence 45688998885 3457899999985
No 10
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=39.09 E-value=19 Score=27.88 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=22.2
Q ss_pred hhhcccCCCCCCEEEEEEeeCcccEEEE
Q 043499 362 AFSKYKNLKQGHVCVFELIKAKDILLKV 389 (396)
Q Consensus 362 ~F~~~N~L~~GD~cvFeli~~~~~~~~V 389 (396)
.-+..+..++||+++|.+.....-|++|
T Consensus 12 ~Wa~~~~f~vGD~L~F~y~~~~hsV~~v 39 (91)
T 1f56_A 12 NGARGKSFRAGDVLVFKYIKGQHNVVAV 39 (91)
T ss_dssp BSCTTCCBCTTCEEEEECCBTTBCEEEE
T ss_pred cCcCCccEeCCCEEEEEccCCCCeEEEE
Confidence 4577888999999999999765556665
No 11
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=33.87 E-value=29 Score=27.73 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=19.3
Q ss_pred HHHHHhHcCCCCCCEEEEEEccC
Q 043499 132 WDNFAEYHSIAVGYFLVFKYAKN 154 (396)
Q Consensus 132 W~~F~~~~~L~~GD~lvF~~~g~ 154 (396)
...-+..+..+.||.|+|+|...
T Consensus 21 Y~~Wa~~~~F~vGD~LvF~y~~~ 43 (109)
T 1ws8_A 21 YAKWASSNKFHVGDSLLFNYNNK 43 (109)
T ss_dssp HHHHHHTSCBCTTCEEEEECCTT
T ss_pred hhHhhcCCcCcCCCEEEEeecCC
Confidence 34567889999999999999865
No 12
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=33.72 E-value=23 Score=28.41 Aligned_cols=28 Identities=14% Similarity=0.263 Sum_probs=21.6
Q ss_pred hhhcccCCCCCCEEEEEEeeCcccEEEE
Q 043499 362 AFSKYKNLKQGHVCVFELIKAKDILLKV 389 (396)
Q Consensus 362 ~F~~~N~L~~GD~cvFeli~~~~~~~~V 389 (396)
.-+..+..++||.++|.+.....-|++|
T Consensus 23 ~Wa~~~~F~vGD~LvF~y~~~~hsV~~V 50 (109)
T 1ws8_A 23 KWASSNKFHVGDSLLFNYNNKFHNVLQV 50 (109)
T ss_dssp HHHHTSCBCTTCEEEEECCTTTCCEEEE
T ss_pred HhhcCCcCcCCCEEEEeecCCCceEEEE
Confidence 3467889999999999998765445555
No 13
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=31.19 E-value=62 Score=25.02 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=49.8
Q ss_pred cEEEEccCCCCccceeecChHHHHHhCCCCCceEEEEc---CCCC-EEEEEEEEE--CCeEEecccHHHHHhHcCCCCCC
Q 043499 72 HFFKVILPSTVQEKKLRIPRKFVKRFGDELSAVATLNV---PNGR-VWQVGLRKD--GRKIWLQDGWDNFAEYHSIAVGY 145 (396)
Q Consensus 72 ~F~kv~~~~~~~~~~L~IP~~F~~~~~~~~~~~v~L~~---p~G~-~W~V~l~~~--~~~~~~~~GW~~F~~~~~L~~GD 145 (396)
.|...+... ....||..+-+.++-.....+.+.. .+|. .......+- .+.+.+- ++..+..+|+.||
T Consensus 6 ~~~~kv~~~----gqvtiP~~iR~~LgI~~GD~V~v~~i~~~~g~~~~~~~~~~v~~kGqitIP---keiR~~lgi~~Gd 78 (92)
T 2glw_A 6 KFHTTVHRI----GRIIIPAGTRKFYGIEQGDFVEIKIVKYEGEEPKEGTFTARVGEQGSVIIP---KALRDVIGIKPGE 78 (92)
T ss_dssp EEEEECBGG----GEEECCHHHHHHHTCCTTCEEEEEEEEEETTEEEEEEEEEECCGGGEEECC---HHHHHHHTCCTTC
T ss_pred eEEEEEeCC----CEEEecHHHHHHcCCCCCCEEEEEEEEecCCccceeEEEEEECcCceEECc---HHHHHHcCCCCCC
Confidence 344444442 6899999999999877766666522 2333 111111111 2444443 5788899999999
Q ss_pred EEEEEEccCce
Q 043499 146 FLVFKYAKNST 156 (396)
Q Consensus 146 ~lvF~~~g~~~ 156 (396)
.+.|...|...
T Consensus 79 ~l~~~~~~~~~ 89 (92)
T 2glw_A 79 VIEVLLLGHYK 89 (92)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEEEEeCcEE
Confidence 99999876543
No 14
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=29.47 E-value=16 Score=29.62 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.1
Q ss_pred HHHhHcCCCCCCEEEEEEccC
Q 043499 134 NFAEYHSIAVGYFLVFKYAKN 154 (396)
Q Consensus 134 ~F~~~~~L~~GD~lvF~~~g~ 154 (396)
.-+.....+.||.|+|+|...
T Consensus 23 ~Wa~~~~f~vGD~L~F~y~~~ 43 (116)
T 1x9u_A 23 TWATGKTFRVGDELEFDFAAG 43 (116)
T ss_dssp HHHTTCCEETTCEEEECCCTT
T ss_pred hccccccCcCCCEEEEEecCC
Confidence 457888999999999999854
No 15
>3qve_A HMG box-containing protein 1; SGC, HMG box transcription factor 1, HBP1, AXH domain, struc genomics consortium, transcription; 2.04A {Homo sapiens} PDB: 1v06_A
Probab=27.94 E-value=11 Score=31.52 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=17.2
Q ss_pred eEeCcCchhhh----------cccCCCCCCEEE
Q 043499 354 CGIKGGWPAFS----------KYKNLKQGHVCV 376 (396)
Q Consensus 354 ~~~~~GW~~F~----------~~N~L~~GD~cv 376 (396)
+++++||..|. .-..|++||+|+
T Consensus 100 FV~gqGWsSc~P~~T~~~ygL~C~~L~vGDvCl 132 (139)
T 3qve_A 100 YVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCL 132 (139)
T ss_dssp EETTTEEEESSHHHHHHHHCCCCEECCTTCEEC
T ss_pred EEecccceeECcccchhhcCCcceecccCCEec
Confidence 45678997774 346789999995
No 16
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=27.75 E-value=1e+02 Score=21.77 Aligned_cols=28 Identities=11% Similarity=-0.002 Sum_probs=22.7
Q ss_pred CeEEecccHHHHHhHcCCCCCCEEEEEEccC
Q 043499 124 RKIWLQDGWDNFAEYHSIAVGYFLVFKYAKN 154 (396)
Q Consensus 124 ~~~~~~~GW~~F~~~~~L~~GD~lvF~~~g~ 154 (396)
+.+.+= ++..+..+|+.||.+.|...++
T Consensus 22 GqItIP---keiR~~Lgi~~Gd~l~i~~~~~ 49 (59)
T 1yfb_A 22 GRVVIP---IELRRTLGIAEKDALEIYVDDE 49 (59)
T ss_dssp CEEECC---HHHHHHTTCCTTCEEEEEEETT
T ss_pred CEEEeC---HHHHHHcCCCCCCEEEEEEECC
Confidence 445554 5788899999999999999877
No 17
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=27.18 E-value=58 Score=22.20 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=20.2
Q ss_pred HHHHhHcCCCCCCEEEEEEccCc
Q 043499 133 DNFAEYHSIAVGYFLVFKYAKNS 155 (396)
Q Consensus 133 ~~F~~~~~L~~GD~lvF~~~g~~ 155 (396)
+++.+..+|+.||.+.|...++.
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~~~ 40 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDESE 40 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECSSS
T ss_pred HHHHHHcCcCCCCEEEEEEECCE
Confidence 57888999999999999998774
No 18
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=26.37 E-value=20 Score=30.13 Aligned_cols=28 Identities=11% Similarity=0.198 Sum_probs=21.1
Q ss_pred hhhcccCCCCCCEEEEEEeeCcccEEEE
Q 043499 362 AFSKYKNLKQGHVCVFELIKAKDILLKV 389 (396)
Q Consensus 362 ~F~~~N~L~~GD~cvFeli~~~~~~~~V 389 (396)
.-+..+..++||+++|.+.....-|++|
T Consensus 25 ~Wa~~~~F~vGD~LvF~y~~~~HsV~~V 52 (138)
T 1jer_A 25 QWAAGKTFRVGDSLQFNFPANAHNVHEM 52 (138)
T ss_dssp HHHHTCCEETTCEEEECCCTTTCCCEEE
T ss_pred hhhcCCcCcCCCEEEEeecCCCceEEEe
Confidence 3466789999999999998655445555
Done!