BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043501
         (152 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1LPM|A Chain A, A Structural Basis For The Chiral Preferences Of Lipases
 pdb|1LPN|A Chain A, Analogs Of Reaction Intermediates Identify A Unique
          Substrate Binding Site In Candida Rugosa Lipase
 pdb|1LPO|A Chain A, Analogs Of Reaction Intermediates Identify A Unique
          Substrate Binding Site In Candida Rugosa Lipase
 pdb|1LPP|A Chain A, Analogs Of Reaction Intermediates Identify A Unique
          Substrate Binding Site In Candida Rugosa Lipase
 pdb|1LPS|A Chain A, A Structural Basis For The Chiral Preferences Of Lipases
          Length = 549

 Score = 28.5 bits (62), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 8/57 (14%)

Query: 46 ITVALALSIVSLFEGANSSLTAAVVVVTGL--------IGANFVQATLDKLRFRDPI 94
          + +ALALS+++    A ++  A    +TGL        +G  F +  +  LRF+DP+
Sbjct: 1  MELALALSLIASVAAAPTATLANGDTITGLNAIINEAFLGIPFAEPPVGNLRFKDPV 57


>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
           Candida Tropicalis Yeast
          Length = 334

 Score = 26.9 bits (58), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 9/85 (10%)

Query: 13  VILSTLFSLY---STALAGRLV--GLEPSL---TVSILPRCITVALALSIVSL-FEGANS 63
           +I    +SLY     A  G+++  G++ +    T++ LP   +V L + + S+ F+G + 
Sbjct: 150 IINKNAYSLYLNSEDASTGKIIFGGVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSV 209

Query: 64  SLTAAVVVVTGLIGANFVQATLDKL 88
           S  A VV+ +G     F Q+T DK 
Sbjct: 210 STNADVVLDSGTTITYFSQSTADKF 234


>pdb|3ND0|A Chain A, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
           ANTIPORTER
 pdb|3ND0|B Chain B, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
           ANTIPORTER
 pdb|3Q17|A Chain A, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
           CYANOBACTERIUM IN Bromide
 pdb|3Q17|B Chain B, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
           CYANOBACTERIUM IN Bromide
          Length = 466

 Score = 26.9 bits (58), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 64  SLTAAVVV--VTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSA 114
           +L AA+VV  +TG++GA F  A  + L++R  +A+ +A       L TA +S 
Sbjct: 31  TLVAAIVVGLITGVLGAGFKSAVNNMLQWRSQLAQILAPIPPLAWLVTALISG 83


>pdb|1F4W|L Chain L, Crystal Structure Of An Anti-Carbohydrate Antibody
           Directed Against Vibrio Cholerae O1 In Complex With
           Antigen
 pdb|1F4X|L Chain L, Crystal Structure Of An Anti-Carbohydrate Antibody
           Directed Against Vibrio Cholerae O1 In Complex With
           Antigen
          Length = 210

 Score = 26.6 bits (57), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 73  TGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGI 132
           TGLIGA   +A    +RF   +  G A         T   +  E EA+ FCA+ Y+   +
Sbjct: 47  TGLIGATNNRAAGVPVRFSGSLIGGKAAL-------TITGAQTEDEAIYFCALWYSGHWV 99

Query: 133 FG 134
           FG
Sbjct: 100 FG 101


>pdb|1F4Y|L Chain L, Crystal Structure Of An Anti-Carbohydrate Antibody
           Directed Against Vibrio Cholerae O1 In Complex With
           Antigen
          Length = 210

 Score = 26.6 bits (57), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 73  TGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGI 132
           TGLIGA   +A    +RF   +  G A         T   +  E EA+ FCA+ Y+   +
Sbjct: 47  TGLIGATNNRAAGVPVRFSGSLIGGKAAL-------TITGAQTEDEAIYFCALWYSGHWV 99

Query: 133 FG 134
           FG
Sbjct: 100 FG 101


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.135    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,352,838
Number of Sequences: 62578
Number of extensions: 104591
Number of successful extensions: 308
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 8
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)