Query 043501
Match_columns 152
No_of_seqs 108 out of 759
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:41:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043501.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043501hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10711 hypothetical protein; 100.0 4.2E-50 9E-55 329.3 17.9 149 1-152 83-231 (231)
2 COG1346 LrgB Putative effector 100.0 2.6E-50 5.6E-55 328.9 15.6 145 1-148 85-229 (230)
3 PRK04288 antiholin-like protei 100.0 5.6E-50 1.2E-54 328.6 17.1 144 1-147 88-231 (232)
4 TIGR00659 conserved hypothetic 100.0 1.1E-48 2.4E-53 319.9 16.9 144 1-147 82-225 (226)
5 PF04172 LrgB: LrgB-like famil 100.0 1.1E-48 2.4E-53 318.1 16.4 143 1-146 72-214 (215)
6 PF03601 Cons_hypoth698: Conse 96.0 0.08 1.7E-06 45.4 10.0 116 9-126 85-208 (305)
7 COG0385 Predicted Na+-dependen 94.0 0.64 1.4E-05 40.5 9.9 82 3-88 64-150 (319)
8 PF01758 SBF: Sodium Bile acid 93.8 1 2.2E-05 35.2 10.1 85 3-88 24-111 (187)
9 TIGR00832 acr3 arsenical-resis 93.8 0.75 1.6E-05 39.6 10.0 83 2-88 68-156 (328)
10 TIGR00698 conserved hypothetic 93.4 1.1 2.3E-05 39.2 10.3 109 16-126 98-216 (335)
11 TIGR00841 bass bile acid trans 93.3 0.98 2.1E-05 37.9 9.7 81 4-88 35-120 (286)
12 PF06826 Asp-Al_Ex: Predicted 92.6 2.4 5.2E-05 33.5 10.4 84 2-85 79-167 (169)
13 PRK04288 antiholin-like protei 92.3 2 4.4E-05 35.8 10.1 75 11-89 154-232 (232)
14 TIGR00659 conserved hypothetic 91.7 2.8 6.1E-05 34.8 10.3 74 12-89 149-226 (226)
15 COG2855 Predicted membrane pro 91.5 1.5 3.2E-05 38.5 8.7 112 12-124 98-215 (334)
16 TIGR03082 Gneg_AbrB_dup membra 91.3 5.4 0.00012 30.6 11.3 83 2-87 72-155 (156)
17 PF04172 LrgB: LrgB-like famil 90.8 2.6 5.7E-05 34.6 9.2 74 11-88 138-215 (215)
18 PRK10711 hypothetical protein; 90.5 3.3 7.2E-05 34.5 9.7 73 11-87 149-225 (231)
19 PF13593 DUF4137: SBF-like CPA 88.6 6.6 0.00014 33.6 10.4 84 3-89 57-147 (313)
20 PRK12460 2-keto-3-deoxyglucona 87.8 13 0.00028 32.4 11.7 76 66-149 225-305 (312)
21 COG1346 LrgB Putative effector 87.5 6.4 0.00014 32.9 9.3 74 11-88 151-228 (230)
22 TIGR00946 2a69 he Auxin Efflux 86.9 13 0.00028 31.3 11.0 86 2-88 233-320 (321)
23 TIGR00808 malonate_madM malona 85.0 2.9 6.3E-05 34.9 6.0 137 2-145 101-246 (254)
24 PF03601 Cons_hypoth698: Conse 84.5 3.4 7.3E-05 35.5 6.4 124 18-147 30-169 (305)
25 PF05145 AmoA: Putative ammoni 83.3 19 0.00042 30.8 10.6 85 2-89 50-135 (318)
26 PRK03818 putative transporter; 82.7 14 0.00031 34.1 10.1 91 2-92 86-186 (552)
27 PRK04972 putative transporter; 82.1 15 0.00033 34.0 10.1 90 2-91 85-188 (558)
28 TIGR00793 kdgT 2-keto-3-deoxyg 81.6 25 0.00053 30.8 10.5 125 18-149 171-311 (314)
29 COG2239 MgtE Mg/Co/Ni transpor 81.4 6.9 0.00015 35.6 7.5 74 3-99 352-426 (451)
30 PF05145 AmoA: Putative ammoni 81.2 28 0.00061 29.8 10.9 85 2-89 229-314 (318)
31 TIGR03802 Asp_Ala_antiprt aspa 80.0 12 0.00026 34.7 8.6 91 2-92 83-188 (562)
32 COG0798 ACR3 Arsenite efflux p 78.6 25 0.00055 31.0 9.7 86 2-88 76-164 (342)
33 TIGR01625 YidE_YbjL_dupl AspT/ 78.1 11 0.00023 29.4 6.7 57 2-58 79-137 (154)
34 PF09605 Trep_Strep: Hypotheti 77.4 19 0.0004 28.6 8.0 81 4-87 102-182 (186)
35 COG0679 Predicted permeases [G 74.0 40 0.00088 28.5 9.7 79 7-87 224-306 (311)
36 TIGR00400 mgtE Mg2+ transporte 72.3 25 0.00053 31.4 8.3 84 3-110 353-437 (449)
37 TIGR00841 bass bile acid trans 70.2 28 0.0006 29.2 7.8 82 6-89 194-280 (286)
38 TIGR00698 conserved hypothetic 69.9 16 0.00035 31.9 6.5 67 80-148 105-176 (335)
39 PRK12460 2-keto-3-deoxyglucona 68.8 76 0.0016 27.7 10.3 75 18-92 230-311 (312)
40 COG2985 Predicted permease [Ge 68.5 52 0.0011 30.8 9.5 89 7-96 90-189 (544)
41 PRK04125 murein hydrolase regu 68.4 9.5 0.00021 29.5 4.2 30 1-30 86-115 (141)
42 PF04226 Transgly_assoc: Trans 66.3 2.9 6.3E-05 26.4 0.8 19 72-90 2-20 (48)
43 COG3180 AbrB Putative ammonia 64.5 62 0.0014 28.7 9.0 88 2-92 262-350 (352)
44 PRK01821 hypothetical protein; 63.6 14 0.0003 28.3 4.2 32 1-32 88-119 (133)
45 PRK03818 putative transporter; 57.7 72 0.0016 29.5 8.6 81 5-85 462-545 (552)
46 COG0385 Predicted Na+-dependen 57.0 85 0.0018 27.5 8.5 77 8-88 224-304 (319)
47 PRK03659 glutathione-regulated 56.8 1.7E+02 0.0036 27.2 11.2 84 3-87 288-375 (601)
48 PRK09903 putative transporter 55.0 1.3E+02 0.0027 25.3 10.4 78 11-89 232-311 (314)
49 PF03812 KdgT: 2-keto-3-deoxyg 53.3 77 0.0017 27.7 7.6 126 17-149 170-311 (314)
50 PRK09543 znuB high-affinity zi 53.2 1.3E+02 0.0028 24.9 9.3 88 6-104 6-94 (261)
51 PRK03562 glutathione-regulated 51.9 2.1E+02 0.0045 26.8 11.2 84 3-87 291-378 (621)
52 COG3180 AbrB Putative ammonia 51.9 1.7E+02 0.0038 25.9 9.8 84 2-88 83-167 (352)
53 PRK10457 hypothetical protein; 49.9 32 0.00069 24.1 3.9 29 64-92 26-54 (82)
54 TIGR03802 Asp_Ala_antiprt aspa 48.1 1.9E+02 0.004 26.9 9.7 59 2-60 473-532 (562)
55 PRK10669 putative cation:proto 40.9 2.8E+02 0.0061 25.2 11.0 83 5-88 301-387 (558)
56 PF00909 Ammonium_transp: Ammo 39.8 2.6E+02 0.0057 24.5 9.3 84 9-95 223-306 (399)
57 TIGR00832 acr3 arsenical-resis 39.6 1.5E+02 0.0034 25.4 7.4 55 12-69 251-309 (328)
58 PF08566 Pam17: Mitochondrial 39.3 1E+02 0.0022 24.8 5.7 34 54-87 67-101 (173)
59 PRK04972 putative transporter; 37.1 3.1E+02 0.0068 25.4 9.4 59 2-60 468-527 (558)
60 PF10011 DUF2254: Predicted me 35.7 3E+02 0.0065 24.0 11.0 53 64-118 65-120 (371)
61 PF11167 DUF2953: Protein of u 35.6 91 0.002 19.4 4.1 33 58-93 3-38 (53)
62 PF03553 Na_H_antiporter: Na+/ 35.1 38 0.00083 27.8 2.9 42 41-83 219-260 (303)
63 cd02431 Ferritin_CCC1_C CCC1-r 34.6 1.6E+02 0.0035 22.6 6.1 76 58-137 6-83 (149)
64 COG4129 Predicted membrane pro 33.7 2.2E+02 0.0047 24.9 7.4 74 17-100 16-89 (332)
65 PLN03159 cation/H(+) antiporte 32.5 4.9E+02 0.011 25.5 10.9 80 8-87 352-435 (832)
66 COG2261 Predicted membrane pro 32.2 1.2E+02 0.0025 21.5 4.5 30 63-92 25-54 (82)
67 PF14068 YuiB: Putative membra 31.7 84 0.0018 23.2 3.8 37 54-92 62-98 (102)
68 COG3817 Predicted membrane pro 30.8 17 0.00037 31.3 0.1 40 46-86 231-271 (313)
69 TIGR02185 Trep_Strep conserved 30.2 2.8E+02 0.006 21.9 8.9 23 65-87 163-185 (189)
70 PF10831 DUF2556: Protein of u 28.9 34 0.00074 22.1 1.2 15 1-15 1-15 (53)
71 TIGR01006 polys_exp_MPA1 polys 28.1 86 0.0019 24.9 3.8 22 2-23 17-38 (226)
72 COG1380 Putative effector of m 28.0 1.2E+02 0.0025 23.2 4.2 30 2-31 85-114 (128)
73 COG2855 Predicted membrane pro 27.7 1.9E+02 0.004 25.6 5.9 68 79-148 108-179 (334)
74 COG0730 Predicted permeases [G 25.8 3.5E+02 0.0076 21.7 9.5 76 21-98 161-239 (258)
75 cd01059 CCC1_like CCC1-related 25.7 1.9E+02 0.004 21.7 5.0 71 58-137 6-76 (143)
76 PF04186 FxsA: FxsA cytoplasmi 25.7 2.8E+02 0.006 20.4 6.5 86 52-150 16-106 (119)
77 COG3290 CitA Signal transducti 24.5 2.2E+02 0.0047 26.8 6.0 41 2-42 169-214 (537)
78 PF01169 UPF0016: Uncharacteri 24.2 2.3E+02 0.005 19.3 4.9 27 5-31 31-57 (78)
79 PRK13664 hypothetical protein; 23.9 1.3E+02 0.0028 20.2 3.3 21 2-22 4-24 (62)
80 PRK05274 2-keto-3-deoxyglucona 23.4 3E+02 0.0064 24.0 6.4 77 66-149 232-313 (326)
81 PRK05274 2-keto-3-deoxyglucona 22.8 3.9E+02 0.0084 23.3 7.0 73 19-92 238-319 (326)
82 KOG3030 Lipid phosphate phosph 22.0 85 0.0018 27.3 2.8 30 3-32 237-266 (317)
83 COG1108 ZnuB ABC-type Mn2+/Zn2 21.8 5E+02 0.011 22.0 8.9 84 7-101 16-100 (274)
84 PF10812 DUF2561: Protein of u 21.3 68 0.0015 26.5 1.9 49 94-144 152-201 (207)
85 PF06166 DUF979: Protein of un 20.7 28 0.0006 30.4 -0.5 40 46-86 227-267 (308)
86 PF02706 Wzz: Chain length det 20.6 33 0.00072 24.7 0.0 27 1-27 11-37 (152)
87 COG0025 NhaP NhaP-type Na+/H+ 20.3 2.7E+02 0.0059 24.8 5.7 33 2-34 83-117 (429)
88 PF13828 DUF4190: Domain of un 20.2 1.3E+02 0.0029 19.8 2.9 28 71-98 17-44 (62)
No 1
>PRK10711 hypothetical protein; Provisional
Probab=100.00 E-value=4.2e-50 Score=329.25 Aligned_cols=149 Identities=26% Similarity=0.485 Sum_probs=144.2
Q ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhh
Q 043501 1 LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANF 80 (152)
Q Consensus 1 ~lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~ 80 (152)
.+||||+||+.++.+|++++++++++++++||+|+|+..|++||||||||||+++|++|| +|++|+++|++||++|+++
T Consensus 83 ~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~pkSVTtPIAm~is~~iGG-~~sLta~~ViitGi~Ga~~ 161 (231)
T PRK10711 83 QIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASILPKSVTTPIAMAVGGSIGG-IPAISAVCVIFVGILGAVF 161 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhhhhhHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHHHhhcCcCCchhhHhhhhhcchhhhhHHhhhcCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhC
Q 043501 81 VQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSLLAIAG 152 (152)
Q Consensus 81 g~~ll~~~~I~~~~a~GlalG~~aHaiGTa~a~~~~~~~ga~aslam~l~gi~t~i~~~~P~~~~~l~~~~g 152 (152)
||+++|++|||||++||+++|++||++||||++|+||+||+|||++|+++|++|+++ +|++.++++.+-|
T Consensus 162 g~~llk~~rI~~~~A~G~alG~aaHaiGTAkA~e~~~~~Ga~ssLam~l~Gi~ta~~--~P~~~~l~~~~~~ 231 (231)
T PRK10711 162 GHTLLNAMRIRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALVICGIITSLI--APFLFPLILALMG 231 (231)
T ss_pred HHHHHHHcCCCCHHHHHHHHhHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999998 4899988877654
No 2
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.6e-50 Score=328.86 Aligned_cols=145 Identities=34% Similarity=0.581 Sum_probs=140.9
Q ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhh
Q 043501 1 LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANF 80 (152)
Q Consensus 1 ~lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~ 80 (152)
++||||++|+.++++|+++++.+.++++|+||+|+|+.+|++|||||||||||+||++|| .|++|+++|++||++|+++
T Consensus 85 ~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~Sl~PkSvTTpiAm~vs~~iGG-ip~ltav~Vi~tGi~Gavl 163 (230)
T COG1346 85 LIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILSLLPKSVTTPIAMEVSESIGG-IPALTAVFVILTGILGAVL 163 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhcccccccHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHHhhcCcCCchhhHhhhhhcchhhhhHHhhhcCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 043501 81 VQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSLL 148 (152)
Q Consensus 81 g~~ll~~~~I~~~~a~GlalG~~aHaiGTa~a~~~~~~~ga~aslam~l~gi~t~i~~~~P~~~~~l~ 148 (152)
||.++|++|||||.|||+++|++||++||||++|.||+||||||++|+++|++|++++ |++.+++.
T Consensus 164 g~~llk~~~i~~~~ArGla~G~~sHa~GTara~E~g~~eGa~ssL~m~L~Gi~t~~~a--Pll~~l~~ 229 (230)
T COG1346 164 GPLLLKLLRIRHPVARGLALGTASHALGTARAIELGEEEGAMSSLAMVLCGIITVLLA--PLLAHLIL 229 (230)
T ss_pred HHHHHHHhccCcHHHhHHhhcchhhhhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHH--HHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999984 88888764
No 3
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=100.00 E-value=5.6e-50 Score=328.60 Aligned_cols=144 Identities=23% Similarity=0.371 Sum_probs=139.8
Q ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhh
Q 043501 1 LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANF 80 (152)
Q Consensus 1 ~lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~ 80 (152)
.+||||++|++++++|+.++++++++++++||+|+++..|++||||||||||+++|++|| +|++|+++|++||++|+++
T Consensus 88 ~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl~pKSVTtPIAm~is~~iGG-~psLtA~~ViitGi~Gai~ 166 (232)
T PRK04288 88 VLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASMLPQAATTAIALPVSAGIGG-IKEITSFAVIFNAVIIYAL 166 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhHhhhHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHHHhhcCcCCchhhHhhhhhcchhhhhHHhhhcCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 043501 81 VQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSL 147 (152)
Q Consensus 81 g~~ll~~~~I~~~~a~GlalG~~aHaiGTa~a~~~~~~~ga~aslam~l~gi~t~i~~~~P~~~~~l 147 (152)
||+++|++|||||++||+++|++||++||+|++|++|++|+|||++|+++|++|++++ |++.+++
T Consensus 167 g~~llk~~~I~~~~a~GlalG~asHaiGTarA~e~~~~~Ga~sslam~l~gi~tail~--P~l~~l~ 231 (232)
T PRK04288 167 GAKFLKLFRIKNPIAKGLALGTSGHALGVAVGIEMGEVEAAMASIAVVVVGVVTVAVV--PVFVPII 231 (232)
T ss_pred HHHHHHHcCCCCHHHHHHHHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999985 8877654
No 4
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=100.00 E-value=1.1e-48 Score=319.92 Aligned_cols=144 Identities=31% Similarity=0.522 Sum_probs=139.8
Q ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhh
Q 043501 1 LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANF 80 (152)
Q Consensus 1 ~lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~ 80 (152)
.+||||+||+.++.+|+.++++++++++++||+|+++..|++|||||||+||+++|++|| +|++|+++|++||++|+++
T Consensus 82 ~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl~pkSvTtpiAm~vs~~iGG-~~sLta~~vvitGi~Ga~~ 160 (226)
T TIGR00659 82 QIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASLLPKSVTTPIAMHVSEMIGG-IPAVTAVFVILTGLLGTVF 160 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHhhhHHhhHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHHHhhcCcCCchhhHhhhhhcchhhhhHHhhhcCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 043501 81 VQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSL 147 (152)
Q Consensus 81 g~~ll~~~~I~~~~a~GlalG~~aHaiGTa~a~~~~~~~ga~aslam~l~gi~t~i~~~~P~~~~~l 147 (152)
||+++|++|||||++||+++|++||++||+|++|+||++|+|||++|+++|++|+++. |++.+++
T Consensus 161 g~~ll~~~~i~~~~A~GlalG~aaHaiGTa~a~e~~~~~Ga~ssLam~l~gi~ta~l~--P~l~~l~ 225 (226)
T TIGR00659 161 GPMVLRYFRVKNEIARGLLLGTSSHGLGTARCFELDSVAGAISSLSMVLCGIITSWIA--PFLFHLI 225 (226)
T ss_pred HHHHHHHcCCCcHHHHHHHHhHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999984 8877654
No 5
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=100.00 E-value=1.1e-48 Score=318.14 Aligned_cols=143 Identities=36% Similarity=0.617 Sum_probs=139.4
Q ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhh
Q 043501 1 LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANF 80 (152)
Q Consensus 1 ~lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~ 80 (152)
.+||||++++.++.+|+++++++++++++++|+|+|+.+|++|||||||+|+|++|++|| +|++|+++|++||++|+++
T Consensus 72 ~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSVTtpiAi~is~~iGG-~~sLta~~VvitGi~Ga~~ 150 (215)
T PF04172_consen 72 LLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLAPKSVTTPIAIEISEQIGG-IPSLTAVFVVITGILGAVL 150 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHhhHHHHHHHHHHhCC-hHHHHHHHHHHHhhHHHHh
Confidence 379999999999999999999999999999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHHHhhcCcCCchhhHhhhhhcchhhhhHHhhhcCCcchhHHHHHHHHHHHHHHHHhhhHHHHHH
Q 043501 81 VQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQS 146 (152)
Q Consensus 81 g~~ll~~~~I~~~~a~GlalG~~aHaiGTa~a~~~~~~~ga~aslam~l~gi~t~i~~~~P~~~~~ 146 (152)
||+++|++|||||+|||+++|++||++||+|++|++|++|+||+++|+++|++|++++ |++.++
T Consensus 151 g~~llk~~~I~~~~A~GlalG~~sHaiGTa~a~e~~~~~ga~sslam~l~gi~t~~~~--P~~~~l 214 (215)
T PF04172_consen 151 GPPLLKLLRIKDPVARGLALGTASHAIGTARALEIGEEAGAFSSLAMILSGILTALLA--PLLAPL 214 (215)
T ss_pred HHHHHhHcccccHHHHHHHhccchHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999984 888765
No 6
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.97 E-value=0.08 Score=45.43 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhCCChHHHHHHhhhh----hhhHHHHH-HHHhhCCCchhHHHHHHHHHHHHHHhhHH
Q 043501 9 IFMSVILSTLFSLYSTALAG-RLVGLEPSLTVSILPRC----ITVALALS-IVSLFEGANSSLTAAVVVVTGLIGANFVQ 82 (152)
Q Consensus 9 il~~~~~g~~~~~~~~~~l~-~~lgl~~~~~~Sl~pkS----vTtpiAi~-is~~igG~~~slta~~vi~tGi~G~~~g~ 82 (152)
-+.-..+.....+..+++++ |+|++|++...=+..-+ ++.-+|++ +-+.=.- +.+.+...|.+-|.+..++-|
T Consensus 85 ~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~-~~a~ava~V~lfg~vam~~~P 163 (305)
T PF03601_consen 85 GLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKEE-DVAYAVATVFLFGTVAMFLYP 163 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCCC-ceeeeehHHHHHHHHHHHHHH
Confidence 34445666677788889999 99999999765443322 12222221 1122223 578888899999999999999
Q ss_pred HHHhhcCcCCchhhHhhhhhcchhhhhHH--hhhcCCcchhHHHHH
Q 043501 83 ATLDKLRFRDPIARGIATASSAHGLGTAA--LSAKEPEALPFCAIA 126 (152)
Q Consensus 83 ~ll~~~~I~~~~a~GlalG~~aHaiGTa~--a~~~~~~~ga~asla 126 (152)
.+-++++.+ |..-|+=.|.+=|-.+-.- ....+++++.++.+.
T Consensus 164 ~l~~~l~l~-~~~~G~w~G~sIh~~aqVvaAg~~~g~~a~~~A~iv 208 (305)
T PF03601_consen 164 LLGHALGLS-PQQFGAWAGGSIHDTAQVVAAGAIYGEEAGDVATIV 208 (305)
T ss_pred HHHHHhCCC-HHHHHHHhhhhhcccchHhhhhhccChHHHHHHHHH
Confidence 999999998 7788888888877766554 444577777755543
No 7
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=93.99 E-value=0.64 Score=40.47 Aligned_cols=82 Identities=21% Similarity=0.338 Sum_probs=70.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHh-----hhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHH
Q 043501 3 KRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSIL-----PRCITVALALSIVSLFEGANSSLTAAVVVVTGLIG 77 (152)
Q Consensus 3 k~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~-----pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G 77 (152)
-|||++.++++.+=-.+=-..++.+++++.+|+|+...+. |-.++. .-.+..-+| |.+++....-++-++|
T Consensus 64 ~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~~l~~Gl~ll~~~Pggv~S---~~~t~lAkG-nValsV~~tsvStll~ 139 (319)
T COG0385 64 LKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLGCCPGGVAS---NAMTYLAKG-NVALSVCSTSVSTLLG 139 (319)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHheeeCCCchhH---HHHHHHhcC-cHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999887664 656665 444555668 8999999999999999
Q ss_pred HhhHHHHHhhc
Q 043501 78 ANFVQATLDKL 88 (152)
Q Consensus 78 ~~~g~~ll~~~ 88 (152)
..+-|.+..++
T Consensus 140 ~f~tPllv~l~ 150 (319)
T COG0385 140 PFLTPLLVGLL 150 (319)
T ss_pred HHHHHHHHHHH
Confidence 99999999884
No 8
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=93.79 E-value=1 Score=35.17 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=62.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH-HHhCCChHHHHHHhhhhh--hhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHh
Q 043501 3 KRHAAEIFMSVILSTLFSLYSTALAG-RLVGLEPSLTVSILPRCI--TVALALSIVSLFEGANSSLTAAVVVVTGLIGAN 79 (152)
Q Consensus 3 k~~~~~il~~~~~g~~~~~~~~~~l~-~~lgl~~~~~~Sl~pkSv--TtpiAi~is~~igG~~~slta~~vi~tGi~G~~ 79 (152)
+|+.+.++.+++.--++--..++.++ +.++.+++....+.-=+. ..|.+--.++..|| |.+++...+.++-+.-..
T Consensus 24 ~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l~~G-d~~ls~~lt~istll~~~ 102 (187)
T PF01758_consen 24 LRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYLAGG-DVALSVSLTLISTLLAPF 102 (187)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHHhCC-CcccccceeeHHHHHHHH
Confidence 46778899999999999999999999 889999995544433222 23344445666678 899999999999999999
Q ss_pred hHHHHHhhc
Q 043501 80 FVQATLDKL 88 (152)
Q Consensus 80 ~g~~ll~~~ 88 (152)
+-|..+.++
T Consensus 103 ~~P~~~~l~ 111 (187)
T PF01758_consen 103 LMPLLLYLL 111 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
No 9
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=93.77 E-value=0.75 Score=39.61 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=67.4
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHH-----HhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHH
Q 043501 2 VKRHAAEIFMSVILSTLFSLYSTALAGRLV-GLEPSLTVS-----ILPRCITVALALSIVSLFEGANSSLTAAVVVVTGL 75 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~l-gl~~~~~~S-----l~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi 75 (152)
..|++++++.+...--++--..++.+++++ +.++++... ..|=.++ ..-.+..-+| |.+++...+.++.+
T Consensus 68 ~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~---S~v~T~lAkG-nvalsv~lt~~stL 143 (328)
T TIGR00832 68 VFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAM---VFVWNQLAKG-DPEYTLVLVAVNSL 143 (328)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHH---HHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 357899999999999999999999999985 999996654 4565443 3444555557 89999999999999
Q ss_pred HHHhhHHHHHhhc
Q 043501 76 IGANFVQATLDKL 88 (152)
Q Consensus 76 ~G~~~g~~ll~~~ 88 (152)
++.++-|+++..+
T Consensus 144 l~~~~~P~l~~ll 156 (328)
T TIGR00832 144 FQVFLYAPLAWLL 156 (328)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988655
No 10
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=93.38 E-value=1.1 Score=39.19 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHH-HHhCCChHHHHHHhhhh----hhhHHHHHHHHhhCC--CchhHHHHHHHHHHHHHHhhHHHHHhhc
Q 043501 16 STLFSLYSTALAG-RLVGLEPSLTVSILPRC----ITVALALSIVSLFEG--ANSSLTAAVVVVTGLIGANFVQATLDKL 88 (152)
Q Consensus 16 g~~~~~~~~~~l~-~~lgl~~~~~~Sl~pkS----vTtpiAi~is~~igG--~~~slta~~vi~tGi~G~~~g~~ll~~~ 88 (152)
-....++.+++++ |+|++|++...=+..-+ ++.-+| ++..+.. .+.+.+...|.+-|.+...+-|++.+++
T Consensus 98 ~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A--~a~~i~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l 175 (335)
T TIGR00698 98 ILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAA--IEPVIKAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYA 175 (335)
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHH--hccccCCCccceeeeehHHHHHHHHHHHHHHHHHHHH
Confidence 3344566678888 79999999765444322 112222 2222322 2567888889999999999999999999
Q ss_pred C-cCCchhhHhhhhhcchhhhhHH--hhhcCCcchhHHHHH
Q 043501 89 R-FRDPIARGIATASSAHGLGTAA--LSAKEPEALPFCAIA 126 (152)
Q Consensus 89 ~-I~~~~a~GlalG~~aHaiGTa~--a~~~~~~~ga~asla 126 (152)
+ .-++...|+=.|.+=|-.+-.- ....+|+++.+|.+.
T Consensus 176 ~~~ls~~~~G~w~G~tIh~vaqVvAAg~~~~~~a~~~Ativ 216 (335)
T TIGR00698 176 SHLISPDEFGIYAGSTVHEVAQVKASGQLIGPIVENEAVII 216 (335)
T ss_pred cccCCHHHHHHHhhhhHhhHHHHHHHhhhcCHHHHHHHHHH
Confidence 6 2346689999999877766544 333467777666543
No 11
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=93.28 E-value=0.98 Score=37.92 Aligned_cols=81 Identities=16% Similarity=0.260 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHh-----hhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHH
Q 043501 4 RHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSIL-----PRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGA 78 (152)
Q Consensus 4 ~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~-----pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~ 78 (152)
|+++.+..+++.--++--..++.+++++++|++....+. |-..+. .-.++..|| |.++++..+.++-+.+.
T Consensus 35 ~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s---~v~t~~~~g-n~~la~~~~~~stlls~ 110 (286)
T TIGR00841 35 RKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTAS---NVFTYLLKG-DMALSISMTTCSTLLAL 110 (286)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHH---HHHHHHhCC-CHhhhhHHHHHHHHHHH
Confidence 455688888888888888889999999999999776554 444444 458888888 89999999999999999
Q ss_pred hhHHHHHhhc
Q 043501 79 NFVQATLDKL 88 (152)
Q Consensus 79 ~~g~~ll~~~ 88 (152)
+.-|.++..+
T Consensus 111 vt~Pl~l~~~ 120 (286)
T TIGR00841 111 GMMPLLLYIY 120 (286)
T ss_pred HHHHHHHHHH
Confidence 9999988776
No 12
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=92.58 E-value=2.4 Score=33.47 Aligned_cols=84 Identities=24% Similarity=0.341 Sum_probs=61.8
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHH-HhCCChHHHHHHhhhhhhhHHHHHHHHhh-CCC-chh--HHHHHHHHHHHH
Q 043501 2 VKRHAAEIFMSVILSTLFSLYSTALAGR-LVGLEPSLTVSILPRCITVALALSIVSLF-EGA-NSS--LTAAVVVVTGLI 76 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~~~~~~~l~~-~lgl~~~~~~Sl~pkSvTtpiAi~is~~i-gG~-~~s--lta~~vi~tGi~ 76 (152)
+||+.++.+.--++-+.+....++.++| ++++|+....-...=+.|.|=++.-+++. ... .|+ +.=.....-|++
T Consensus 79 l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~G~~aGa~T~tp~L~~A~~~~~~~~~~~~~vgYa~~Yp~g~i 158 (169)
T PF06826_consen 79 LKRGGLKLLLLGVIITLVPLLIALVIGRYLFKLNPGIAAGILAGALTSTPALAAAQEAISDSGIPAIAVGYAVTYPFGVI 158 (169)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccccCcHHHHHHHHhhhcCCCchhhhhHHHHHHHHHH
Confidence 5778666666666666788888888998 99999999999999999999999888887 321 355 444445555677
Q ss_pred HHhhHHHHH
Q 043501 77 GANFVQATL 85 (152)
Q Consensus 77 G~~~g~~ll 85 (152)
+.++-..++
T Consensus 159 ~~il~~~~i 167 (169)
T PF06826_consen 159 GVILFVQLI 167 (169)
T ss_pred HHHHHHHHH
Confidence 766655443
No 13
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=92.26 E-value=2 Score=35.77 Aligned_cols=75 Identities=15% Similarity=0.235 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhh----hhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhHHHHHh
Q 043501 11 MSVILSTLFSLYSTALAGRLVGLEPSLTVSILP----RCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLD 86 (152)
Q Consensus 11 ~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~p----kSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~g~~ll~ 86 (152)
+-+++-++++...+..+-|+++.+++..+.+.- .-+=|..|+|..|.- | +.+.....++|++-+++.|++++
T Consensus 154 ~~ViitGi~Gai~g~~llk~~~I~~~~a~GlalG~asHaiGTarA~e~~~~~-G---a~sslam~l~gi~tail~P~l~~ 229 (232)
T PRK04288 154 FAVIFNAVIIYALGAKFLKLFRIKNPIAKGLALGTSGHALGVAVGIEMGEVE-A---AMASIAVVVVGVVTVAVVPVFVP 229 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHHHHHHHHcCcHH-H---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778889999999999999998776654 445566777777755 3 57777889999999999999998
Q ss_pred hcC
Q 043501 87 KLR 89 (152)
Q Consensus 87 ~~~ 89 (152)
+++
T Consensus 230 l~~ 232 (232)
T PRK04288 230 IIG 232 (232)
T ss_pred HhC
Confidence 754
No 14
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=91.73 E-value=2.8 Score=34.80 Aligned_cols=74 Identities=16% Similarity=0.250 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhh----hhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhHHHHHhh
Q 043501 12 SVILSTLFSLYSTALAGRLVGLEPSLTVSILPRC----ITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLDK 87 (152)
Q Consensus 12 ~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkS----vTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~g~~ll~~ 87 (152)
-+++.++++...+..+-++++.+++..+.+.--+ +=|.-|+|..|+- | +.......++|++-+++.|+++++
T Consensus 149 ~vvitGi~Ga~~g~~ll~~~~i~~~~A~GlalG~aaHaiGTa~a~e~~~~~-G---a~ssLam~l~gi~ta~l~P~l~~l 224 (226)
T TIGR00659 149 FVILTGLLGTVFGPMVLRYFRVKNEIARGLLLGTSSHGLGTARCFELDSVA-G---AISSLSMVLCGIITSWIAPFLFHL 224 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHhHHHHHHHHHHHHHcCchH-H---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667888889999999999999877766544 5566666776654 2 567777899999999999999876
Q ss_pred cC
Q 043501 88 LR 89 (152)
Q Consensus 88 ~~ 89 (152)
.|
T Consensus 225 ~~ 226 (226)
T TIGR00659 225 IK 226 (226)
T ss_pred hC
Confidence 53
No 15
>COG2855 Predicted membrane protein [Function unknown]
Probab=91.48 E-value=1.5 Score=38.50 Aligned_cols=112 Identities=21% Similarity=0.265 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhh-hhhhHHHHHHH-HhhCC--CchhHHHHHHHHHHHHHHhhHHHHHhh
Q 043501 12 SVILSTLFSLYSTALAGRLVGLEPSLTVSILPR-CITVALALSIV-SLFEG--ANSSLTAAVVVVTGLIGANFVQATLDK 87 (152)
Q Consensus 12 ~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pk-SvTtpiAi~is-~~igG--~~~slta~~vi~tGi~G~~~g~~ll~~ 87 (152)
....--..+++.++++++++|+|+++..=...- |+-=.=|+-.. ..++. .+.+.+...|.+-|.+.+++-|++.++
T Consensus 98 ~~~~~l~~t~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~ 177 (334)
T COG2855 98 IIAITLSSTFLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPL 177 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHH
Confidence 333444567888999999999999976544322 22111121111 11111 145677788888899999999999999
Q ss_pred cCcCCchhhHhhhhhcchhhhhHH--hhhcCCcchhHHH
Q 043501 88 LRFRDPIARGIATASSAHGLGTAA--LSAKEPEALPFCA 124 (152)
Q Consensus 88 ~~I~~~~a~GlalG~~aHaiGTa~--a~~~~~~~ga~as 124 (152)
++ -||...|+=.|++=|-++-.. ....|++++..|.
T Consensus 178 l~-l~~~~~GifaG~TvHeVaqVvaAg~~~~~~a~~~A~ 215 (334)
T COG2855 178 LG-LSPEQFGIFAGSTVHEVAQVVAAGGAIGPEAANTAT 215 (334)
T ss_pred hC-CCcchheeeechhHHHHHHHHHhcccCCchhhhHHH
Confidence 99 678889999999988776544 3334666655333
No 16
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=91.29 E-value=5.4 Score=30.58 Aligned_cols=83 Identities=19% Similarity=0.193 Sum_probs=59.5
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHH-HHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhh
Q 043501 2 VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSL-TVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANF 80 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~-~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~ 80 (152)
++|++.+.+.....-...+...++++.|+.+.|.+. ..+..|=-.+.=.. ++++.|. |+...+.+=.+==++-...
T Consensus 72 ~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~La~~PGGl~~m~~--~A~~~ga-d~~~V~~~q~~Rl~~v~~~ 148 (156)
T TIGR03082 72 LKRLWPAALLSTVLLLALSALLAWLLARLTGVDPLTAFLATSPGGASEMAA--LAAELGA-DVAFVAAMQTLRLLFVVLL 148 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhCCchHHHHHH--HHHHhCC-CHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999874 56777776664333 4567777 7887776544333333344
Q ss_pred HHHHHhh
Q 043501 81 VQATLDK 87 (152)
Q Consensus 81 g~~ll~~ 87 (152)
-|++.++
T Consensus 149 ~P~i~~~ 155 (156)
T TIGR03082 149 VPLLARL 155 (156)
T ss_pred HHHHHhh
Confidence 5555554
No 17
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=90.78 E-value=2.6 Score=34.60 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhh----hhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhHHHHHh
Q 043501 11 MSVILSTLFSLYSTALAGRLVGLEPSLTVSILP----RCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLD 86 (152)
Q Consensus 11 ~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~p----kSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~g~~ll~ 86 (152)
+.+++-++++...+..+.|+++.++++.+.+.- ..+=|.-|+|..|+-| +.+.....++|++-+++.|.+++
T Consensus 138 ~~VvitGi~Ga~~g~~llk~~~I~~~~A~GlalG~~sHaiGTa~a~e~~~~~g----a~sslam~l~gi~t~~~~P~~~~ 213 (215)
T PF04172_consen 138 VFVVITGILGAVLGPPLLKLLRIKDPVARGLALGTASHAIGTARALEIGEEAG----AFSSLAMILSGILTALLAPLLAP 213 (215)
T ss_pred HHHHHHhhHHHHhHHHHHhHcccccHHHHHHHhccchHHHHHHHHHHcCchHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677778899999999999998877765 4455666777766542 56777788999999999999987
Q ss_pred hc
Q 043501 87 KL 88 (152)
Q Consensus 87 ~~ 88 (152)
++
T Consensus 214 li 215 (215)
T PF04172_consen 214 LI 215 (215)
T ss_pred hC
Confidence 63
No 18
>PRK10711 hypothetical protein; Provisional
Probab=90.53 E-value=3.3 Score=34.48 Aligned_cols=73 Identities=8% Similarity=0.079 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHh----hhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhHHHHHh
Q 043501 11 MSVILSTLFSLYSTALAGRLVGLEPSLTVSIL----PRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLD 86 (152)
Q Consensus 11 ~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~----pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~g~~ll~ 86 (152)
+.+++.++++...+..+.|+++.++++.+.+. ..-+=|..|+|..|+-| +.......++|++-+++.|++.+
T Consensus 149 ~~ViitGi~Ga~~g~~llk~~rI~~~~A~G~alG~aaHaiGTAkA~e~~~~~G----a~ssLam~l~Gi~ta~~~P~~~~ 224 (231)
T PRK10711 149 VCVIFVGILGAVFGHTLLNAMRIRTKAARGLAMGTASHALGTARCAELDYQEG----AFSSLALVICGIITSLIAPFLFP 224 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhHhhHHHHHHHHHHcCcHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777889999999999999999877665 45566777788877653 56777788999999999999887
Q ss_pred h
Q 043501 87 K 87 (152)
Q Consensus 87 ~ 87 (152)
+
T Consensus 225 l 225 (231)
T PRK10711 225 L 225 (231)
T ss_pred H
Confidence 6
No 19
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=88.56 E-value=6.6 Score=33.56 Aligned_cols=84 Identities=20% Similarity=0.205 Sum_probs=67.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHH-----HhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHH
Q 043501 3 KRHAAEIFMSVILSTLFSLYSTALAGRLV--GLEPSLTVS-----ILPRCITVALALSIVSLFEGANSSLTAAVVVVTGL 75 (152)
Q Consensus 3 k~~~~~il~~~~~g~~~~~~~~~~l~~~l--gl~~~~~~S-----l~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi 75 (152)
.|||+..+.....--++--..++.+.+++ ..++|+... .+|-++...++ .+++-|| |.+.+.....++-+
T Consensus 57 ~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~--~T~~AgG-N~a~Al~~~~~snl 133 (313)
T PF13593_consen 57 LRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFLPPELALGLLILACLPTTVSSSVV--LTRLAGG-NVALALFNAVLSNL 133 (313)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhHHHH--HHHHcCC-CHHHHHHHHHHHhh
Confidence 47889999888888888888888888888 467776554 45666666554 4677888 99999999999999
Q ss_pred HHHhhHHHHHhhcC
Q 043501 76 IGANFVQATLDKLR 89 (152)
Q Consensus 76 ~G~~~g~~ll~~~~ 89 (152)
+|..+-|.+++++-
T Consensus 134 lgv~ltP~ll~l~l 147 (313)
T PF13593_consen 134 LGVFLTPLLLLLLL 147 (313)
T ss_pred hhHhHHHHHHHHHh
Confidence 99999999998864
No 20
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=87.83 E-value=13 Score=32.39 Aligned_cols=76 Identities=20% Similarity=0.197 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhcCcCCchhhHhhhh--hcchhhhhHHhhhcCCcchhHHHHHHHH---HHHHHHHHhhh
Q 043501 66 TAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATA--SSAHGLGTAALSAKEPEALPFCAIAYAL---TGIFGSLICSV 140 (152)
Q Consensus 66 ta~~vi~tGi~G~~~g~~ll~~~~I~~~~a~GlalG--~~aHaiGTa~a~~~~~~~ga~aslam~l---~gi~t~i~~~~ 140 (152)
....+++|++++..++ |++|.+++. |++.| +.+..-|-+...+-|+.-.+++..|-.. +-++|++++
T Consensus 225 ~v~vv~~t~~~~~~i~----rllg~~~~~--g~li~stAGnAIcgpAAVaAadP~~~~~~~~Ataqvaa~vivTail~-- 296 (312)
T PRK12460 225 GVLVTIVTGFFNIFAD----RLVGGTGIA--GAAASSTAGNAVATPLAIAAADPSLAPVAAAATAQVAASVIVTAILT-- 296 (312)
T ss_pred HHHHHHHHHHHHHHHH----HHhCCChhH--HHHHHHHhhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3556667777777666 444544444 78888 4444555566777777777777776554 345667774
Q ss_pred HHHHHHHHH
Q 043501 141 PAVRQSLLA 149 (152)
Q Consensus 141 P~~~~~l~~ 149 (152)
|++..|+.+
T Consensus 297 P~~t~~~~k 305 (312)
T PRK12460 297 PLLTSWVAK 305 (312)
T ss_pred HHHHHHHHH
Confidence 888888654
No 21
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=87.51 E-value=6.4 Score=32.90 Aligned_cols=74 Identities=14% Similarity=0.176 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhh----hhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhHHHHHh
Q 043501 11 MSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRC----ITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLD 86 (152)
Q Consensus 11 ~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkS----vTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~g~~ll~ 86 (152)
+.+..-++++.+.++.+.|+++..+.++..+.--+ +=|.-|+|..|+- -+.+....+++|++-+++.|.+.+
T Consensus 151 v~Vi~tGi~Gavlg~~llk~~~i~~~~ArGla~G~~sHa~GTara~E~g~~e----Ga~ssL~m~L~Gi~t~~~aPll~~ 226 (230)
T COG1346 151 VFVILTGILGAVLGPLLLKLLRIRHPVARGLALGTASHALGTARAIELGEEE----GAMSSLAMVLCGIITVLLAPLLAH 226 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHhHHhhcchhhhhhhHHHHHcCchH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888999999999999999887776554 4566666665544 367788889999999999999998
Q ss_pred hc
Q 043501 87 KL 88 (152)
Q Consensus 87 ~~ 88 (152)
++
T Consensus 227 l~ 228 (230)
T COG1346 227 LI 228 (230)
T ss_pred Hh
Confidence 75
No 22
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=86.94 E-value=13 Score=31.27 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=65.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhh--hHHHHHHHHhhCCCchhHHHHHHHHHHHHHHh
Q 043501 2 VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCIT--VALALSIVSLFEGANSSLTAAVVVVTGLIGAN 79 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvT--tpiAi~is~~igG~~~slta~~vi~tGi~G~~ 79 (152)
+|++++.+...+.+=-++.-...+.+.+++++|++......--+.. ...+.-.+++.|+ |++.++..+.+|=++..+
T Consensus 233 ~~~~~~~~~~~~~~klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~-~~~~aa~~v~~sT~ls~~ 311 (321)
T TIGR00946 233 IKLGVRDAILALIVRFLVQPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEV-DVELASTAVTLSTVLSLI 311 (321)
T ss_pred hccChHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCC-CHHHHHHHHHHHHHHHHH
Confidence 3556677777777777788888888899999998876555544432 2234567899998 899999999998888887
Q ss_pred hHHHHHhhc
Q 043501 80 FVQATLDKL 88 (152)
Q Consensus 80 ~g~~ll~~~ 88 (152)
.-|.++..+
T Consensus 312 tlp~~~~l~ 320 (321)
T TIGR00946 312 SLPLFIILL 320 (321)
T ss_pred HHHHHHHHh
Confidence 777776654
No 23
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=85.00 E-value=2.9 Score=34.91 Aligned_cols=137 Identities=15% Similarity=0.246 Sum_probs=85.7
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHH-HhhCCCchhHHHHHHHHHH----HH
Q 043501 2 VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIV-SLFEGANSSLTAAVVVVTG----LI 76 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is-~~igG~~~slta~~vi~tG----i~ 76 (152)
+||--+.=.++++.|.+++.+.....++.||.++.+.++-..--.-|=|==|++ ..+|- +.+.-+ .-+-+| ++
T Consensus 101 ~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~DavS~tTIGAGAvTyIVGPVTGaAiGA-sS~ViA-LSIA~GlvKai~ 178 (254)
T TIGR00808 101 VKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYRDAVSMTTIGAGAVTYIVGPVTGAAVGA-SSEVIA-LSIAIGLIKAIL 178 (254)
T ss_pred HHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhheeeccceEEEEecCccchhccC-CcchHH-HHHHHhHHHHHh
Confidence 355556667899999999999999999999999988766543322221111121 22332 222222 233344 44
Q ss_pred HHhhHHHHHhhcCcCCchhh---HhhhhhcchhhhhHH-hhhcCCcchhHHHHHHHHHHHHHHHHhhhHHHHH
Q 043501 77 GANFVQATLDKLRFRDPIAR---GIATASSAHGLGTAA-LSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQ 145 (152)
Q Consensus 77 G~~~g~~ll~~~~I~~~~a~---GlalG~~aHaiGTa~-a~~~~~~~ga~aslam~l~gi~t~i~~~~P~~~~ 145 (152)
-.+.-|++-|.++.|||++. |=-+|++| |++. +...|++--+|..+.-.+.-=+..++. |.+.-
T Consensus 179 vMv~TP~~A~~igL~nPrsAmvfGGLmGT~S---GVaaGLAATD~kLVPYGAltATFyTglGCLl~--PSvlf 246 (254)
T TIGR00808 179 VMVGTPLLAKFMYLDNPRSAMVFGGLAGTTS---GVTAGLAATDVRLVPYGALTATFYTGLGCLLG--PSVLF 246 (254)
T ss_pred heeccHHHHhhccCCCcchhheeccccccch---hhhccccccCcccccchhhHHHHHhcchHhhc--hHHHH
Confidence 55567888899999998875 33455555 4444 566788888888877666555555554 54433
No 24
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=84.51 E-value=3.4 Score=35.49 Aligned_cols=124 Identities=15% Similarity=0.219 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHH-HhCCChHHHHHHh--h-hhhhhHHHH-----HHH--HhhCCCchhHHHHHHHHHHHHHHhhHHHHH-
Q 043501 18 LFSLYSTALAGR-LVGLEPSLTVSIL--P-RCITVALAL-----SIV--SLFEGANSSLTAAVVVVTGLIGANFVQATL- 85 (152)
Q Consensus 18 ~~~~~~~~~l~~-~lgl~~~~~~Sl~--p-kSvTtpiAi-----~is--~~igG~~~slta~~vi~tGi~G~~~g~~ll- 85 (152)
.++++.+..+.. .++.++......- . |=..+-|.+ .+. .+.|. ..+.. +++.=+....++.++-
T Consensus 30 ~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~--~~~~~--~~~~v~~~~~~~~~lg~ 105 (305)
T PF03601_consen 30 LIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGW--KGLLI--IIIVVILTFLLTYWLGR 105 (305)
T ss_pred HHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCc--cHHHH--HHHHHHHHHHHHHHHHH
Confidence 556666666775 7777776544332 1 222222221 122 23433 23222 2222344566778888
Q ss_pred hhcCcCCchhh----HhhhhhcchhhhhHHhhhcCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 043501 86 DKLRFRDPIAR----GIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSL 147 (152)
Q Consensus 86 ~~~~I~~~~a~----GlalG~~aHaiGTa~a~~~~~~~ga~aslam~l~gi~t~i~~~~P~~~~~l 147 (152)
|++|++++.+. |.+.--+|-.+.++-..+-++|+-+++--...+.|.+..++ .|++.+++
T Consensus 106 r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~--~P~l~~~l 169 (305)
T PF03601_consen 106 RLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFL--YPLLGHAL 169 (305)
T ss_pred HHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHH--HHHHHHHh
Confidence 99999986554 44444445556666677777888888888888899888776 58888875
No 25
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=83.25 E-value=19 Score=30.84 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=65.4
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-hHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhh
Q 043501 2 VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLE-PSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANF 80 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~-~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~ 80 (152)
+++||.+++...+.-...+...++++.|.-+.| .+-..+..|=..+.=+++. |+.|+ |+..-+.+=.+==++-..+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~~TA~~~~~PGg~s~m~~la--~~~ga-d~~~Va~~q~lRl~~Vv~~ 126 (318)
T PF05145_consen 50 LASWWPPMLLLLVVTLLLSLVGAWLLRRISGLDRATAFFASMPGGLSEMVALA--EEYGA-DTRRVALVQSLRLLLVVLL 126 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHcCCccHHHHHHHH--HHcCC-ChhhhHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999 6778899998888877655 88887 7876665433333334445
Q ss_pred HHHHHhhcC
Q 043501 81 VQATLDKLR 89 (152)
Q Consensus 81 g~~ll~~~~ 89 (152)
-|++.+++.
T Consensus 127 vP~i~~~~~ 135 (318)
T PF05145_consen 127 VPFIASLLG 135 (318)
T ss_pred HHHHHHHhh
Confidence 666666543
No 26
>PRK03818 putative transporter; Validated
Probab=82.69 E-value=14 Score=34.13 Aligned_cols=91 Identities=15% Similarity=0.213 Sum_probs=62.6
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHh-hC--C------CchhHHHHHHHH
Q 043501 2 VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSL-FE--G------ANSSLTAAVVVV 72 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~-ig--G------~~~slta~~vi~ 72 (152)
+||+-+....--++-++++...++.+.++|++|.....-.+.=+.|.+=|+.-+++ ++ + .+|++.=..+..
T Consensus 86 l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~aa~~~~~~~~~~~~~~~~~a~gYa~~Yp 165 (552)
T PRK03818 86 LRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPLPVMLGIFSGAVTNTPALGAGQQILRDLGTPGDLVDQMGMGYAMAYP 165 (552)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccccccHHHHHHHHHHhccCCCccccCCcchhhHhHhH
Confidence 46653444333344455666678888999999999999999999999888876653 21 1 135555566677
Q ss_pred HHHHHHhhHHHHH-hhcCcCC
Q 043501 73 TGLIGANFVQATL-DKLRFRD 92 (152)
Q Consensus 73 tGi~G~~~g~~ll-~~~~I~~ 92 (152)
-|++|.++--.++ |++|+|.
T Consensus 166 ~g~i~~il~~~~~~~~~~~~~ 186 (552)
T PRK03818 166 FGICGILLSMWLIRLIFRINV 186 (552)
T ss_pred HHHHHHHHHHHHHHHHhCCCh
Confidence 7888888765543 4567764
No 27
>PRK04972 putative transporter; Provisional
Probab=82.10 E-value=15 Score=34.01 Aligned_cols=90 Identities=20% Similarity=0.159 Sum_probs=59.6
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHh-hCCC------------chhHHHH
Q 043501 2 VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSL-FEGA------------NSSLTAA 68 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~-igG~------------~~slta~ 68 (152)
+||+-+.....-++-++++...++.+.|+||+|.....-++.=+.|.+=++..+++ ++.. +++..=.
T Consensus 85 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~~a~~~~~~~~~~~~~~~~~~~~~~vgYa 164 (558)
T PRK04972 85 FFRDGKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGAESRQLSLALDNLSLGYA 164 (558)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccccCcHHHHHHHHHHhccCccccchhcccCccchhHH
Confidence 56664445545556666778888889999999999999999999998767666554 2211 1344445
Q ss_pred HHHHHHHHHHhhHHHHH-hhcCcC
Q 043501 69 VVVVTGLIGANFVQATL-DKLRFR 91 (152)
Q Consensus 69 ~vi~tGi~G~~~g~~ll-~~~~I~ 91 (152)
.+..-|++|.++--.++ +++|+|
T Consensus 165 ~~y~~g~i~~i~~~~~~p~l~rid 188 (558)
T PRK04972 165 LTYLIGLVSLIVGARYLPKLQHQD 188 (558)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55666777766544433 334544
No 28
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=81.57 E-value=25 Score=30.77 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHH---------HHHHHHhhCCCchh--HHHHHHHHHHHHHHhhHHHHHh
Q 043501 18 LFSLYSTALAGRLVGLEPSLTVSILPRCITVAL---------ALSIVSLFEGANSS--LTAAVVVVTGLIGANFVQATLD 86 (152)
Q Consensus 18 ~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpi---------Ai~is~~igG~~~s--lta~~vi~tGi~G~~~g~~ll~ 86 (152)
+++.+.-.+++..+|==++-.+.++.|..+.-| .|+..+.+.++-+. |....+++||+.....- |
T Consensus 171 lv~~ilPlliG~ilGNLD~~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~~~d----r 246 (314)
T TIGR00793 171 FVGAVLPFLVGFALGNLDPELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLILAD----K 246 (314)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHH----H
Confidence 444444555555555444445566666554322 23444432222233 33555667777665433 3
Q ss_pred hcCcCCchhhHhhhhh-cchhhhhHH-hhhcCCcchhHHHHHHHH---HHHHHHHHhhhHHHHHHHHH
Q 043501 87 KLRFRDPIARGIATAS-SAHGLGTAA-LSAKEPEALPFCAIAYAL---TGIFGSLICSVPAVRQSLLA 149 (152)
Q Consensus 87 ~~~I~~~~a~GlalG~-~aHaiGTa~-a~~~~~~~ga~aslam~l---~gi~t~i~~~~P~~~~~l~~ 149 (152)
+++=++..+ |.|.|+ +..++.|-. ..|-|++-.+++..|-.. +-++|++++ |++..|..+
T Consensus 247 ~~~g~~g~a-G~A~sstAGnAvatPaavA~adPs~~~~a~~ATaqvAaavivTaiL~--Pilta~~~k 311 (314)
T TIGR00793 247 FIGGGDGTA-GIAASSSAGAAVATPVLIAEMVPAFKPVAPAATALVATSVIVTSLLV--PIATVWWSK 311 (314)
T ss_pred HhcCCCCch-hhHHHHHHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 332145555 999995 455666666 445677777777777654 345667774 888887654
No 29
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=81.43 E-value=6.9 Score=35.56 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=51.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhH
Q 043501 3 KRHAAEIFMSVILSTLFSLYSTAL-AGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFV 81 (152)
Q Consensus 3 k~~~~~il~~~~~g~~~~~~~~~~-l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~g 81 (152)
|.-++++-+|...|++.+.+.... ..+++|- -.+|. ..+.+.+..++.+-+-..+.
T Consensus 352 ~vl~rE~~vG~~~G~vl~~~~~~~~~~~~~~~----------------------~~l~~-~v~~al~~~~~~A~l~G~~i 408 (451)
T COG2239 352 RVLLKELGVGLLLGLVLAIIIGLRVPAWLYGG----------------------LLLGL-IVALALLLNILFAALVGVLI 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------------chHHH-HHHHHHHHHHHHHHHhhchH
Confidence 456788889999999999777774 4444443 23444 35556666666655556689
Q ss_pred HHHHhhcCcCCchhhHhh
Q 043501 82 QATLDKLRFRDPIARGIA 99 (152)
Q Consensus 82 ~~ll~~~~I~~~~a~Gla 99 (152)
|.++|++|++-.++-|--
T Consensus 409 P~ll~kl~~DPAvaS~p~ 426 (451)
T COG2239 409 PILLKKLGLDPAVASGPL 426 (451)
T ss_pred HHHHHHcCCCchhhccch
Confidence 999999999876665543
No 30
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=81.22 E-value=28 Score=29.81 Aligned_cols=85 Identities=18% Similarity=0.153 Sum_probs=67.1
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChH-HHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhh
Q 043501 2 VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPS-LTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANF 80 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~-~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~ 80 (152)
++|++.+.+.....--..+...++.+.++.|.|.. ..+++.|=-++.=-.+ ++.+|. |+++.+.+=++==++=..+
T Consensus 229 ~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~La~aPGGl~eM~l~--A~~l~~-d~~~V~~~q~~Rl~~v~~~ 305 (318)
T PF05145_consen 229 LRRLLPPALLSTLLLLALCALFAWLLSRLTGIDFLTALLATAPGGLAEMALI--ALALGA-DVAFVAAHQVVRLLFVLLL 305 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhCCccHHHHHHH--HHHcCC-ChHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999999999999999875 6789999888875554 445666 7888777655555555677
Q ss_pred HHHHHhhcC
Q 043501 81 VQATLDKLR 89 (152)
Q Consensus 81 g~~ll~~~~ 89 (152)
.|++.|+++
T Consensus 306 ~p~~~r~~~ 314 (318)
T PF05145_consen 306 APFIARWLR 314 (318)
T ss_pred HHHHHHHHH
Confidence 888888763
No 31
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=79.98 E-value=12 Score=34.68 Aligned_cols=91 Identities=13% Similarity=0.177 Sum_probs=60.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHH----hhCCC---------chhHHHH
Q 043501 2 VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVS----LFEGA---------NSSLTAA 68 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~----~igG~---------~~slta~ 68 (152)
+||+-++..+-.++-.+++...++.+.|+||+|.....-++.=+.|.-=++..++ +.+-. ++++.=.
T Consensus 83 l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~Gl~aGalT~tp~l~aA~~a~~~~~~~~~~~~~~~~~~avgYa 162 (562)
T TIGR03802 83 LKKDGLREIILALVFAVSGLITVYALAKIFGLDKGTAAGLAAGGLTQSAVIGTAGDAIEKLGLSPEQKTAYQGNVAVAYA 162 (562)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhchhhccHHHHHHHHHHHhcCCCcchhhccccccceeee
Confidence 5676445555556667788889999999999999999999999999533444433 23210 1333334
Q ss_pred HHHHHHHHHHhh-HHHHH-hhcCcCC
Q 043501 69 VVVVTGLIGANF-VQATL-DKLRFRD 92 (152)
Q Consensus 69 ~vi~tGi~G~~~-g~~ll-~~~~I~~ 92 (152)
....-|++|.++ -..++ |++|+|.
T Consensus 163 v~YpfGvig~i~~~~~~~p~l~~~~~ 188 (562)
T TIGR03802 163 VTYIFGTIGVIIVLVNILPWLMGIDL 188 (562)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhCCCh
Confidence 556678889884 34444 4467763
No 32
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=78.55 E-value=25 Score=31.03 Aligned_cols=86 Identities=12% Similarity=0.155 Sum_probs=63.6
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-hHHHHHHhhhhhhhHHHHH--HHHhhCCCchhHHHHHHHHHHHHHH
Q 043501 2 VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLE-PSLTVSILPRCITVALALS--IVSLFEGANSSLTAAVVVVTGLIGA 78 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~-~~~~~Sl~pkSvTtpiAi~--is~~igG~~~slta~~vi~tGi~G~ 78 (152)
.+|+++++.+++....+++-+..+.+++.|=-| +|....+.-==+--=+||. =++.-+| |++.|++.|-++-++=.
T Consensus 76 v~k~~k~L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~G-d~~~tlv~Va~n~l~qi 154 (342)
T COG0798 76 VFKDPKPLILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKG-DRELTLVLVAFNSLLQI 154 (342)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccC-cHhhhhHHHHHHHHHHH
Confidence 367899999999999999999999999996544 4444444322222222332 2455557 89999999999999999
Q ss_pred hhHHHHHhhc
Q 043501 79 NFVQATLDKL 88 (152)
Q Consensus 79 ~~g~~ll~~~ 88 (152)
++-+++.+.+
T Consensus 155 v~y~~~~~~~ 164 (342)
T COG0798 155 VLYAPLGKFF 164 (342)
T ss_pred HHHHHHHHHH
Confidence 8888888774
No 33
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=78.07 E-value=11 Score=29.36 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=45.8
Q ss_pred hHhhH--HHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHhh
Q 043501 2 VKRHA--AEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLF 58 (152)
Q Consensus 2 lk~~~--~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~i 58 (152)
+||+. ..+..+.++-.+...+..+...+++++|.....-...=+.|.|=++..+++.
T Consensus 79 l~~~gg~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~aGa~T~tpaL~aa~~~ 137 (154)
T TIGR01625 79 LKDGGGLLRINGGALITVVPTLLVAVALIKLLRINYALTAGMLAGATTNTPALDAANDT 137 (154)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhccccChHHHHHHHHH
Confidence 56654 5666666666667777777778899999999999999999999998887654
No 34
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=77.36 E-value=19 Score=28.57 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhHHH
Q 043501 4 RHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQA 83 (152)
Q Consensus 4 ~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~g~~ 83 (152)
|+++....+-.+-++... +..+-.++.-|+.. .++..|..+.--+-.+.+-..+..--+-.+..++.|++|+.+|..
T Consensus 102 ~~~~~~~iay~vf~~~~~--g~~~p~~~~~~~y~-~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~a~lG~~lG~k 178 (186)
T PF09605_consen 102 KSKKRNTIAYAVFSLGYM--GPYLPIWFMRDAYL-AAMIAKGMGAEYADTMISFFTPWMLIIIIIITFVGALLGALLGKK 178 (186)
T ss_pred CcHHHHHHHHHHHHHHHH--hhHHHHHHhHHHHH-HHHHHcCCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666555554443 55555666544333 467788888887777777664322233445567789999999999
Q ss_pred HHhh
Q 043501 84 TLDK 87 (152)
Q Consensus 84 ll~~ 87 (152)
++|+
T Consensus 179 llkK 182 (186)
T PF09605_consen 179 LLKK 182 (186)
T ss_pred HHHH
Confidence 9986
No 35
>COG0679 Predicted permeases [General function prediction only]
Probab=74.04 E-value=40 Score=28.48 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=58.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHH---HHHHHhhCCCchhHHHHHHHHHHHHHHhhHH
Q 043501 7 AEIFMSVIL-STLFSLYSTALAGRLVGLEPSLTVSILPRCITVALA---LSIVSLFEGANSSLTAAVVVVTGLIGANFVQ 82 (152)
Q Consensus 7 ~~il~~~~~-g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiA---i~is~~igG~~~slta~~vi~tGi~G~~~g~ 82 (152)
++....... --++.-...+..++.+|++++....+.-.+ ..|-| .-++++.|+ |+.+++..+.+|=++-.+.-|
T Consensus 224 ~~~~~~~~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~-a~P~A~~~~v~a~~~~~-~~~laa~~i~ist~ls~~t~p 301 (311)
T COG0679 224 PPIILIALSLKLLLAPLVALLVAKLLGLSGLALQVLVLLS-AMPTAVNAYVLARQYGG-DPRLAASTILLSTLLSLLTLP 301 (311)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHh-hCcHHhHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHH
Confidence 333333333 567888889999999999999776665555 44544 467899998 899999999998888777775
Q ss_pred HHHhh
Q 043501 83 ATLDK 87 (152)
Q Consensus 83 ~ll~~ 87 (152)
.+.-.
T Consensus 302 ~~~~~ 306 (311)
T COG0679 302 LLILL 306 (311)
T ss_pred HHHHH
Confidence 55443
No 36
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=72.32 E-value=25 Score=31.42 Aligned_cols=84 Identities=15% Similarity=0.175 Sum_probs=51.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHH-HHHHHHHHHHHhhH
Q 043501 3 KRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTA-AVVVVTGLIGANFV 81 (152)
Q Consensus 3 k~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta-~~vi~tGi~G~~~g 81 (152)
|.-|+++.++.+.|.+.+.+.......+.| +.. +++ ..+++. ..+++.+++|.. -
T Consensus 353 ~~~~~e~~v~~~~g~~~g~~~~~~~~~~~~-~~~-------------~~~---------~v~~~~~~~~~~~~~~G~~-l 408 (449)
T TIGR00400 353 KVILREICVSILVGAILASVNFLRIVFFQG-KLL-------------IAF---------VVSSSLFVSLTVAKILGGL-L 408 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Cch-------------HHH---------HHHHHHHHHHHHHHHHHHH-H
Confidence 344788888888888888766655444333 110 111 122222 234556677775 4
Q ss_pred HHHHhhcCcCCchhhHhhhhhcchhhhhH
Q 043501 82 QATLDKLRFRDPIARGIATASSAHGLGTA 110 (152)
Q Consensus 82 ~~ll~~~~I~~~~a~GlalG~~aHaiGTa 110 (152)
|.+++++|+|...+-|--+-+..-.+|+-
T Consensus 409 p~~~~k~~~DPa~~s~p~itt~~D~~g~~ 437 (449)
T TIGR00400 409 PIVAKLLKLDPALMSGPLITTIADALTLI 437 (449)
T ss_pred HHHHHHcCCChhhhhhhHHHHHHHHHHHH
Confidence 99999999998887777766666555543
No 37
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=70.20 E-value=28 Score=29.17 Aligned_cols=82 Identities=18% Similarity=0.107 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHH----hhhhhhhHHHHHHHHhhCCCchhH-HHHHHHHHHHHHHhh
Q 043501 6 AAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSI----LPRCITVALALSIVSLFEGANSSL-TAAVVVVTGLIGANF 80 (152)
Q Consensus 6 ~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl----~pkSvTtpiAi~is~~igG~~~sl-ta~~vi~tGi~G~~~ 80 (152)
...+.....+=..++...+++++|++++|++..+++ --|+.+ +|+.++...-+..+++ .++..+.--+.+..+
T Consensus 194 ~~~~~~~~~ll~~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~--lal~la~~~f~~~~a~~~~~~~v~~~~~~~~~ 271 (286)
T TIGR00841 194 GPLLLLVGILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ--LCSTIAQLSFSPEVAVPSAIFPLIYALFQLAF 271 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhhheeeeeeeecccHH--HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556788889999999999997655443 345555 5555555442212333 233333445555555
Q ss_pred HHHHHhhcC
Q 043501 81 VQATLDKLR 89 (152)
Q Consensus 81 g~~ll~~~~ 89 (152)
+.++-|+.+
T Consensus 272 a~~~~~~~~ 280 (286)
T TIGR00841 272 ALLFLIIHF 280 (286)
T ss_pred HHHHHHHHH
Confidence 555544433
No 38
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=69.93 E-value=16 Score=31.85 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=48.4
Q ss_pred hHHHHH-hhcCcCCchhhHhhhhh----cchhhhhHHhhhcCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 043501 80 FVQATL-DKLRFRDPIARGIATAS----SAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSLL 148 (152)
Q Consensus 80 ~g~~ll-~~~~I~~~~a~GlalG~----~aHaiGTa~a~~~~~~~ga~aslam~l~gi~t~i~~~~P~~~~~l~ 148 (152)
++.|+- |++|++++.+.=++-|+ +|-.+.++...+-++|+-+++--...+.|.+..++ .|++.+++.
T Consensus 105 ~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~~~~~a~ava~V~lfgt~am~l--~P~l~~~l~ 176 (335)
T TIGR00698 105 LTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIKAEKEKVSVAIAIVVIFGTTGIFL--YPSIYHYAS 176 (335)
T ss_pred HHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccCCCccceeeeehHHHHHHHHHHHH--HHHHHHHHc
Confidence 456776 78999876655444444 45556666677777777788888888999998776 589888764
No 39
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=68.82 E-value=76 Score=27.69 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHh---hhhhhhHHHHHHHHhhCC----CchhHHHHHHHHHHHHHHhhHHHHHhhcCc
Q 043501 18 LFSLYSTALAGRLVGLEPSLTVSIL---PRCITVALALSIVSLFEG----ANSSLTAAVVVVTGLIGANFVQATLDKLRF 90 (152)
Q Consensus 18 ~~~~~~~~~l~~~lgl~~~~~~Sl~---pkSvTtpiAi~is~~igG----~~~slta~~vi~tGi~G~~~g~~ll~~~~I 90 (152)
.++.+..+++.|+++.|++...... --++-+|=|+.-++-.=. ...+..+..|++|-++--++-.|+.|+.|-
T Consensus 230 ~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAadP~~~~~~~~Ataqvaa~vivTail~P~~t~~~~k~~~~ 309 (312)
T PRK12460 230 IVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAADPSLAPVAAAATAQVAASVIVTAILTPLLTSWVAKKEAK 309 (312)
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566777888899999988755444 678888888765443211 023445667888988888888888888765
Q ss_pred CC
Q 043501 91 RD 92 (152)
Q Consensus 91 ~~ 92 (152)
|+
T Consensus 310 ~~ 311 (312)
T PRK12460 310 KK 311 (312)
T ss_pred cc
Confidence 43
No 40
>COG2985 Predicted permease [General function prediction only]
Probab=68.47 E-value=52 Score=30.76 Aligned_cols=89 Identities=15% Similarity=0.201 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHH----HHHHHHhhCCC-----chhHHHHHHHHHHHHH
Q 043501 7 AEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVAL----ALSIVSLFEGA-----NSSLTAAVVVVTGLIG 77 (152)
Q Consensus 7 ~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpi----Ai~is~~igG~-----~~slta~~vi~tGi~G 77 (152)
+-...+++. -..+...++.+-+.+++|..+...+..-++|.-= |.|+.+++|=. .+.+.=....-.|++|
T Consensus 90 ~~~~~alli-vi~~~~~a~~l~k~~~~~~~~~~Gm~sGAlTsTP~L~aa~~~L~~lg~~~~~~~~~~~gYamaYp~Gil~ 168 (544)
T COG2985 90 NLNAFALLI-VIAALLLAWVLHKLFGIDLGLIAGMFSGALTSTPGLGAAQDILRELGAPSQALDQMGMGYALAYPIGILG 168 (544)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhcCCCHHHhhhhhcccccCCchhHHHHHHHHhhccchhhhhhhhhhhhhhhhHHHHH
Confidence 333444444 5667788999999999999999999999998543 45566666321 1233334556789999
Q ss_pred HhhHHHHHhh-cCcCC-chhh
Q 043501 78 ANFVQATLDK-LRFRD-PIAR 96 (152)
Q Consensus 78 ~~~g~~ll~~-~~I~~-~~a~ 96 (152)
.++.-|++++ +|+|+ +.||
T Consensus 169 ii~~~~l~~~l~kvn~~~eAq 189 (544)
T COG2985 169 IILGAWLLPKLFKVNLDTEAQ 189 (544)
T ss_pred HHHHHHHHHHHhcCCCcHHHH
Confidence 9999999966 68874 3443
No 41
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=68.45 E-value=9.5 Score=29.50 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=26.7
Q ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043501 1 LVKRHAAEIFMSVILSTLFSLYSTALAGRL 30 (152)
Q Consensus 1 ~lk~~~~~il~~~~~g~~~~~~~~~~l~~~ 30 (152)
++++||++++..+++++++.+..+.+..++
T Consensus 86 ll~~~~~~Il~~ivvSTllvl~vtg~v~~~ 115 (141)
T PRK04125 86 VMSQYPVQIIGVIIVATILLLACTGLFSQF 115 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999998887765
No 42
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=66.35 E-value=2.9 Score=26.42 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=17.1
Q ss_pred HHHHHHHhhHHHHHhhcCc
Q 043501 72 VTGLIGANFVQATLDKLRF 90 (152)
Q Consensus 72 ~tGi~G~~~g~~ll~~~~I 90 (152)
+.|++|+.+|.++++.+++
T Consensus 2 i~GiiGa~vGg~l~~~lg~ 20 (48)
T PF04226_consen 2 ILGIIGAFVGGWLFGLLGI 20 (48)
T ss_pred eeehHHHHHHHHHHHHhcc
Confidence 5699999999999999877
No 43
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=64.52 E-value=62 Score=28.70 Aligned_cols=88 Identities=18% Similarity=0.164 Sum_probs=67.7
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChH-HHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhh
Q 043501 2 VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPS-LTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANF 80 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~-~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~ 80 (152)
.||+.+++++.++.-...+...++++.|+.|.|.. ..++..|-.+-+=-++.. ..|- |++..+..=++==++-..+
T Consensus 262 ~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~La~sPGGl~~ma~~A~--~l~a-d~a~V~a~q~lRll~il~i 338 (352)
T COG3180 262 AKRLLPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYLATSPGGLDTMAAIAA--ALGA-DPAFVMALQVLRLLFILLL 338 (352)
T ss_pred hHhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHcCCCcHHHHHHHHH--HcCC-ChHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999976 557888888777655544 4543 6777766555555556667
Q ss_pred HHHHHhhcCcCC
Q 043501 81 VQATLDKLRFRD 92 (152)
Q Consensus 81 g~~ll~~~~I~~ 92 (152)
+|.+.|+++=+|
T Consensus 339 ~p~l~r~l~~~~ 350 (352)
T COG3180 339 GPALARFLSKRA 350 (352)
T ss_pred HHHHHHHHHHHc
Confidence 788888876554
No 44
>PRK01821 hypothetical protein; Provisional
Probab=63.61 E-value=14 Score=28.28 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=28.7
Q ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 043501 1 LVKRHAAEIFMSVILSTLFSLYSTALAGRLVG 32 (152)
Q Consensus 1 ~lk~~~~~il~~~~~g~~~~~~~~~~l~~~lg 32 (152)
++++||++++..+++++++.+..+-+..+++.
T Consensus 88 ll~~~~~~il~~ivvST~lvl~vtg~~~~~l~ 119 (133)
T PRK01821 88 LLRAQFGPIVVSCIVSTLVVLLVVGWSSHYVH 119 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999998888763
No 45
>PRK03818 putative transporter; Validated
Probab=57.70 E-value=72 Score=29.54 Aligned_cols=81 Identities=15% Similarity=0.044 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhCCChHHHHHHhhhhhhhHHHHHHHHh--hCCCchhHHHHHHHHHHHHHHhhH
Q 043501 5 HAAEIFMSVILSTLFSLYSTALAG-RLVGLEPSLTVSILPRCITVALALSIVSL--FEGANSSLTAAVVVVTGLIGANFV 81 (152)
Q Consensus 5 ~~~~il~~~~~g~~~~~~~~~~l~-~~lgl~~~~~~Sl~pkSvTtpiAi~is~~--igG~~~slta~~vi~tGi~G~~~g 81 (152)
+.+.++..-.+-+++..+.+++++ ++|+++.....-...=+.|.|=++..+.+ .+...|++.=..+.--|+++.++.
T Consensus 462 ~G~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~aG~~t~tp~l~~a~~~~~~~~~~~~gYa~~Yp~~~~~~i~~ 541 (552)
T PRK03818 462 EGLSWIGYGFLITAVPLLIVGILARMLAKMNYLTLCGMLAGSMTDPPALAFANNLHPTSGAAALSYATVYPLVMFLRIIT 541 (552)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccCCCcHHHHHHhcccCCCCCcccchHHHHHHHHHHHHHH
Confidence 445544443444445556666665 78999999999999999999999988877 344235555555556677777776
Q ss_pred HHHH
Q 043501 82 QATL 85 (152)
Q Consensus 82 ~~ll 85 (152)
..++
T Consensus 542 ~~~~ 545 (552)
T PRK03818 542 PQLL 545 (552)
T ss_pred HHHH
Confidence 6554
No 46
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=57.02 E-value=85 Score=27.45 Aligned_cols=77 Identities=23% Similarity=0.325 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHh----hhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhHHH
Q 043501 8 EIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSIL----PRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQA 83 (152)
Q Consensus 8 ~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~----pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~g~~ 83 (152)
-+.+.+.+=-.++...+|+.+|++|+|++...++. -||-+..+++..+ .. + + ...++=..+-...-.+.+..
T Consensus 224 ~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~lg~alA~~-f~-~-~-~~~alP~aif~~~q~~~~a~ 299 (319)
T COG0385 224 LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGLGAALAAA-FF-G-N-PLMALPLAIFSVWQNMSGAV 299 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHHHHHHHHh-cC-C-C-chhHhHHHHHHHHHHHHHHH
Confidence 34444445556788899999999999999888875 5888888888877 44 3 2 33444444444554555544
Q ss_pred HHhhc
Q 043501 84 TLDKL 88 (152)
Q Consensus 84 ll~~~ 88 (152)
+-+++
T Consensus 300 la~~~ 304 (319)
T COG0385 300 LAGLY 304 (319)
T ss_pred HHHHH
Confidence 44443
No 47
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=56.76 E-value=1.7e+02 Score=27.23 Aligned_cols=84 Identities=15% Similarity=0.051 Sum_probs=53.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChH----HHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHH
Q 043501 3 KRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPS----LTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGA 78 (152)
Q Consensus 3 k~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~----~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~ 78 (152)
.++|+.++..++...+.=....+..++++|.+.. ....+.+|.--.=+-...+.+.|=.++..-.. .+..-++-.
T Consensus 288 ~~~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~-lv~~v~ls~ 366 (601)
T PRK03659 288 YTHLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMAL-LLVVVTLSM 366 (601)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHH-HHHHHHHHH
Confidence 3566666655555556667788889999999874 34567777754444455566665443444444 355556666
Q ss_pred hhHHHHHhh
Q 043501 79 NFVQATLDK 87 (152)
Q Consensus 79 ~~g~~ll~~ 87 (152)
++.|.+++.
T Consensus 367 ~~tP~l~~~ 375 (601)
T PRK03659 367 MTTPLLMKL 375 (601)
T ss_pred HHHHHHHHH
Confidence 778877765
No 48
>PRK09903 putative transporter YfdV; Provisional
Probab=54.99 E-value=1.3e+02 Score=25.27 Aligned_cols=78 Identities=14% Similarity=0.012 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhh--hHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhHHHHHhhc
Q 043501 11 MSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCIT--VALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLDKL 88 (152)
Q Consensus 11 ~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvT--tpiAi~is~~igG~~~slta~~vi~tGi~G~~~g~~ll~~~ 88 (152)
...+.=-++.-...+.+.+++|+|++....+.--|.+ ...+.-.+++.|+ |+.+++..|.+|=++..+--|.++.++
T Consensus 232 ~~~~~Kli~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~-~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 232 YNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNV-YTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444555566677889988866554444432 2223457899998 899999998888777777777776665
Q ss_pred C
Q 043501 89 R 89 (152)
Q Consensus 89 ~ 89 (152)
+
T Consensus 311 ~ 311 (314)
T PRK09903 311 R 311 (314)
T ss_pred H
Confidence 4
No 49
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=53.32 E-value=77 Score=27.72 Aligned_cols=126 Identities=22% Similarity=0.287 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHH---------HHHHHHhhCCCch--hHHHHHHHHHHHHHHhhHHHHH
Q 043501 17 TLFSLYSTALAGRLVGLEPSLTVSILPRCITVAL---------ALSIVSLFEGANS--SLTAAVVVVTGLIGANFVQATL 85 (152)
Q Consensus 17 ~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpi---------Ai~is~~igG~~~--slta~~vi~tGi~G~~~g~~ll 85 (152)
.+++.+.-..++..+|=-++..+.++.+....=| .|+..+.+.++.+ -|....++++|+.....-.++.
T Consensus 170 ~lv~~llP~iiG~iLGNLD~~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~~~dr~i~ 249 (314)
T PF03812_consen 170 SLVAALLPIIIGMILGNLDPDFRKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLYLADRLIL 249 (314)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHHc
Confidence 3445555555666665444445555555443211 2333333322222 3555556677777654333332
Q ss_pred hhcCcCCchhhHhhhhhcc-hhhhhHH-hhhcCCcchhHHHHHHHH---HHHHHHHHhhhHHHHHHHHH
Q 043501 86 DKLRFRDPIARGIATASSA-HGLGTAA-LSAKEPEALPFCAIAYAL---TGIFGSLICSVPAVRQSLLA 149 (152)
Q Consensus 86 ~~~~I~~~~a~GlalG~~a-HaiGTa~-a~~~~~~~ga~aslam~l---~gi~t~i~~~~P~~~~~l~~ 149 (152)
| +|..+ |.|.++++ .++.|=. ..|.|++-.+++..|-.- +-++|++++ |++..|..+
T Consensus 250 ~----~~g~a-G~A~sstAGnavatPaaiA~~dP~~~~~~~~ATaQvAaavIvTail~--P~lt~~~~k 311 (314)
T PF03812_consen 250 K----GNGVA-GAAISSTAGNAVATPAAIAAADPSFAPYAASATAQVAAAVIVTAILT--PILTSWWAK 311 (314)
T ss_pred C----CCCce-eehHHhhhhhhhhhhHHHHHhChhhHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 2 44444 88888765 4555555 344577766766666543 446677775 888887654
No 50
>PRK09543 znuB high-affinity zinc transporter membrane component; Reviewed
Probab=53.16 E-value=1.3e+02 Score=24.88 Aligned_cols=88 Identities=13% Similarity=0.074 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CChHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhHHHH
Q 043501 6 AAEIFMSVILSTLFSLYSTALAGRLVG-LEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQAT 84 (152)
Q Consensus 6 ~~~il~~~~~g~~~~~~~~~~l~~~lg-l~~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~g~~l 84 (152)
+++++.+++++...++...+...|-.- +++.+.++-.| ++.++--+|. +|.+.+ +..+++.+..-.++
T Consensus 6 ~~a~~~~~l~~~~~~~lG~~vvlr~~~~~~~alsH~a~~-------G~~la~~l~~-~~~~~a---~~~~~l~a~~i~~l 74 (261)
T PRK09543 6 LPGWLAGIMLACAAGPLGSFVVWRRMSYFGDTLAHASLL-------GVAFGLLLDV-NPFYAV---IAVTLLLAGGLVWL 74 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHcc-hHHHHH---HHHHHHHHHHHHHH
Confidence 457778888888788877777776433 23335555444 5555556765 565544 33466666666777
Q ss_pred HhhcCcCCchhhHhhhhhcc
Q 043501 85 LDKLRFRDPIARGIATASSA 104 (152)
Q Consensus 85 l~~~~I~~~~a~GlalG~~a 104 (152)
-|+-|++.+...|+.+...-
T Consensus 75 ~~~~~~~~d~~iGi~~s~~~ 94 (261)
T PRK09543 75 EKRPQLAIDTLLGIMAHSAL 94 (261)
T ss_pred HHhcCCchHHHHHHHHHHHH
Confidence 77778888888888776443
No 51
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=51.90 E-value=2.1e+02 Score=26.82 Aligned_cols=84 Identities=7% Similarity=-0.017 Sum_probs=53.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHH----HHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHH
Q 043501 3 KRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSL----TVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGA 78 (152)
Q Consensus 3 k~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~----~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~ 78 (152)
.++|+.++.-++...+.=.+..+..++++|.+... ...+.+|.--.=+-..++.+.|=.++.....++ ..-++-.
T Consensus 291 ~~~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv-~~v~lS~ 369 (621)
T PRK03562 291 LENPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLT-LAVALSM 369 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHH
Confidence 45666666556666666678888999999997653 334445554443444566666544455555544 4557778
Q ss_pred hhHHHHHhh
Q 043501 79 NFVQATLDK 87 (152)
Q Consensus 79 ~~g~~ll~~ 87 (152)
++.|++++.
T Consensus 370 ~~tP~l~~~ 378 (621)
T PRK03562 370 AATPLLLVL 378 (621)
T ss_pred HHHHHHHHh
Confidence 888887765
No 52
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=51.85 E-value=1.7e+02 Score=25.94 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=62.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-hHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhh
Q 043501 2 VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLE-PSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANF 80 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~-~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~ 80 (152)
+|+||.+.++.++.--..++...|++.|.-+.| .+-..+..|--.+.=+.|. |+.|- |..+.+.+=.+==++-+..
T Consensus 83 l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~~gs~PGgas~m~~iA--~d~gA-d~~~VAl~Q~lRvl~Vvl~ 159 (352)
T COG3180 83 LKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAFLGSSPGGASAMVSIA--QDYGA-DLRLVALMQYLRVLFVVLL 159 (352)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHhcCCchHHHHHHHH--HHhCC-ChhHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999998888 4456677777777666554 78876 7877776543333444455
Q ss_pred HHHHHhhc
Q 043501 81 VQATLDKL 88 (152)
Q Consensus 81 g~~ll~~~ 88 (152)
.|.+-+.+
T Consensus 160 vplv~~~~ 167 (352)
T COG3180 160 APLVSRLF 167 (352)
T ss_pred HHHHHHHh
Confidence 56555554
No 53
>PRK10457 hypothetical protein; Provisional
Probab=49.85 E-value=32 Score=24.10 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHhhcCcCC
Q 043501 64 SLTAAVVVVTGLIGANFVQATLDKLRFRD 92 (152)
Q Consensus 64 slta~~vi~tGi~G~~~g~~ll~~~~I~~ 92 (152)
..--..-++.|++|+.+|.++.+.++.++
T Consensus 26 ~~G~~~tiilGiiGA~iGg~l~~~~g~~~ 54 (82)
T PRK10457 26 GGGFFMTIILGIVGAVVGGWISTFFGFGK 54 (82)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 34456678899999999999999887765
No 54
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=48.15 E-value=1.9e+02 Score=26.90 Aligned_cols=59 Identities=27% Similarity=0.362 Sum_probs=44.4
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHH-HHhCCChHHHHHHhhhhhhhHHHHHHHHhhCC
Q 043501 2 VKRHAAEIFMSVILSTLFSLYSTALAG-RLVGLEPSLTVSILPRCITVALALSIVSLFEG 60 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~~~~~~~l~-~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG 60 (152)
+|++.+.++..-++=+++..+.+++++ +++++|+....-...=+.|.|=++.-+.+.-+
T Consensus 473 l~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~aG~~t~t~~l~~a~~~~~ 532 (562)
T TIGR03802 473 IKEMGLTLFLLGIVVTILPLIITMLIGKYVLKYDPALLLGALAGARTATPALGAVLERAG 532 (562)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCCCcHHHHHHHHhcC
Confidence 567755555444444556666677777 79999999999999999999999888776544
No 55
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=40.86 E-value=2.8e+02 Score=25.21 Aligned_cols=83 Identities=7% Similarity=0.053 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCChH----HHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhh
Q 043501 5 HAAEIFMSVILSTLFSLYSTALAGRLVGLEPS----LTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANF 80 (152)
Q Consensus 5 ~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~----~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~ 80 (152)
++..++..+....+.=....+..++++|.+.. ....+.+|.-..=+-..++.+.|=. ++=.-..++...++-.++
T Consensus 301 ~~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii-~~~~~~~~v~~~~~t~~~ 379 (558)
T PRK10669 301 QPLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLL-PQAGQNLVLAGAILSIML 379 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHH
Confidence 44444444444555556677788889987765 3344556666555555666666544 333334466667888889
Q ss_pred HHHHHhhc
Q 043501 81 VQATLDKL 88 (152)
Q Consensus 81 g~~ll~~~ 88 (152)
.|+++|+.
T Consensus 380 ~P~l~~~~ 387 (558)
T PRK10669 380 NPVLFTLL 387 (558)
T ss_pred HHHHHHHh
Confidence 99998764
No 56
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=39.78 E-value=2.6e+02 Score=24.52 Aligned_cols=84 Identities=18% Similarity=0.112 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhHHHHHhhc
Q 043501 9 IFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLDKL 88 (152)
Q Consensus 9 il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~g~~ll~~~ 88 (152)
...-...+...+.+.+..+.+...-..+ ...+.-=.+-==+|+ +..-+=..|.-+..+-++.|.+-...-+++.+++
T Consensus 223 ~~~nT~la~a~g~l~~~~~~~~~~gk~~-~~~~~nG~laGlVai--ta~~~~v~p~~A~~iG~iag~i~~~~~~~l~~~~ 299 (399)
T PF00909_consen 223 AAVNTLLAAAAGGLTWLLISYLLSGKWS-MVGICNGALAGLVAI--TAGAGYVTPWGALLIGAIAGLISYFGVSWLLKRL 299 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSS---HHHHHHHHHHHHHHH--TTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHhhhccccccc-hhhhhhhhhhhhhhe--ecccCCCcHHHHHHhhhhHhhhhhhheeccccee
Confidence 5566667777777888888888763222 111111111111222 2222112233333344444455344444688899
Q ss_pred CcCCchh
Q 043501 89 RFRDPIA 95 (152)
Q Consensus 89 ~I~~~~a 95 (152)
|||||..
T Consensus 300 ~iDD~~~ 306 (399)
T PF00909_consen 300 KIDDPVG 306 (399)
T ss_dssp TS-HTTG
T ss_pred Eeccccc
Confidence 9999864
No 57
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=39.59 E-value=1.5e+02 Score=25.36 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHh----hhhhhhHHHHHHHHhhCCCchhHHHHH
Q 043501 12 SVILSTLFSLYSTALAGRLVGLEPSLTVSIL----PRCITVALALSIVSLFEGANSSLTAAV 69 (152)
Q Consensus 12 ~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~----pkSvTtpiAi~is~~igG~~~slta~~ 69 (152)
.+++=...+...+++++|++++|++...++. -|+.+..+++..+- . + +++.++..
T Consensus 251 ~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~~-f-~-~~~~~a~~ 309 (328)
T TIGR00832 251 PLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAISL-F-G-LNSGAALA 309 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHHh-C-C-CCcccHHH
Confidence 3444456778899999999999999887765 45655555555542 4 3 34554443
No 58
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=39.31 E-value=1e+02 Score=24.77 Aligned_cols=34 Identities=9% Similarity=0.085 Sum_probs=23.1
Q ss_pred HHHhhCCCchhHHHHH-HHHHHHHHHhhHHHHHhh
Q 043501 54 IVSLFEGANSSLTAAV-VVVTGLIGANFVQATLDK 87 (152)
Q Consensus 54 is~~igG~~~slta~~-vi~tGi~G~~~g~~ll~~ 87 (152)
..+.|-|.||-++... ++.+|.+|.++||.+-+.
T Consensus 67 ~~~~I~GlDP~~~~g~~t~a~g~lG~L~GP~~G~~ 101 (173)
T PF08566_consen 67 PTQQIMGLDPFMVYGLATLACGALGWLVGPSLGNQ 101 (173)
T ss_pred ccccccCcCHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3455656678776554 455688999998887643
No 59
>PRK04972 putative transporter; Provisional
Probab=37.15 E-value=3.1e+02 Score=25.43 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=45.1
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHH-HHhCCChHHHHHHhhhhhhhHHHHHHHHhhCC
Q 043501 2 VKRHAAEIFMSVILSTLFSLYSTALAG-RLVGLEPSLTVSILPRCITVALALSIVSLFEG 60 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~~~~~~~l~-~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG 60 (152)
+|++.+.++..-.+-+++..+.+++++ |+++++.....-...=+.|.|=++.-+.+.-+
T Consensus 468 ~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~~~~~G~~aG~~t~~~~l~~~~~~~~ 527 (558)
T PRK04972 468 LGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRALLFGAIMGARTCAPAMEIISDTAR 527 (558)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhCCCCCcHHHHHHHhhcC
Confidence 466655555444555556667777777 78999999999999999999999988877755
No 60
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=35.72 E-value=3e+02 Score=24.01 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHhhcCcCC---chhhHhhhhhcchhhhhHHhhhcCCc
Q 043501 64 SLTAAVVVVTGLIGANFVQATLDKLRFRD---PIARGIATASSAHGLGTAALSAKEPE 118 (152)
Q Consensus 64 slta~~vi~tGi~G~~~g~~ll~~~~I~~---~~a~GlalG~~aHaiGTa~a~~~~~~ 118 (152)
+.+..++.++-- -+-++|.+++.| ++| ...-|.=+|+-.-.+-.-+....+..
T Consensus 65 ~fSi~~val~~a-ssq~sPR~l~~f-~~d~~~q~vLg~Figtfvy~l~~l~~i~~~~~ 120 (371)
T PF10011_consen 65 VFSITLVALQLA-SSQFSPRLLRNF-MRDRVTQVVLGTFIGTFVYSLLVLIAIRSGDY 120 (371)
T ss_pred HHHHHHHHHHHH-hcccchHHHHHH-HhCchHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 333444444433 444899999887 444 55667778888777777776654443
No 61
>PF11167 DUF2953: Protein of unknown function (DUF2953); InterPro: IPR021338 This family of proteins has no known function.
Probab=35.59 E-value=91 Score=19.37 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=18.7
Q ss_pred hCCCchhHHHHHHHHHHHHHHhh---HHHHHhhcCcCCc
Q 043501 58 FEGANSSLTAAVVVVTGLIGANF---VQATLDKLRFRDP 93 (152)
Q Consensus 58 igG~~~slta~~vi~tGi~G~~~---g~~ll~~~~I~~~ 93 (152)
+|-.||+.|+. ++|++-++. -.++-+.++++++
T Consensus 3 ~G~~Daa~Tgi---~~G~l~~~~~~l~~~l~~~~~~~~~ 38 (53)
T PF11167_consen 3 IGLGDAADTGI---LYGLLWAIKGILYGFLSRRFKIKKP 38 (53)
T ss_pred eeccCHHHHHH---HHHHHHHHHHHHHHHHHHHccCCCC
Confidence 34447888876 445554443 3445666776544
No 62
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised. It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane
Probab=35.11 E-value=38 Score=27.85 Aligned_cols=42 Identities=10% Similarity=-0.015 Sum_probs=30.3
Q ss_pred HhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhHHH
Q 043501 41 ILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQA 83 (152)
Q Consensus 41 l~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~g~~ 83 (152)
...=.++.|+..++.|+.|- ++...+-.+.-.|.+|.-+.||
T Consensus 219 ~~ti~i~~pi~~~l~~~~g~-~~~~~a~ai~~~~~~g~~l~P~ 260 (303)
T PF03553_consen 219 WGTIAIMGPIFKPLAEKMGI-SPPLLAGAIESGATFGDPLSPW 260 (303)
T ss_pred hHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHhhhhhcCCCCcc
Confidence 33445667888888888866 6878887777777777766665
No 63
>cd02431 Ferritin_CCC1_C CCC1-related domain of ferritin. Ferritin_CCC1_like_C: The proteins of this family contain two domains. This is the C-terminal domain that is closely related to the CCC1, a vacuole transmembrane protein functioning as an iron and manganese transporter. The N-terminal domain is similar to ferritin-like diiron-carboxylate proteins, which are involved in a variety of iron ion related functions, such as iron storage and regulation, mono-oxygenation, and reactive radical production. This family may be unique to certain bacteria and archaea.
Probab=34.63 E-value=1.6e+02 Score=22.63 Aligned_cols=76 Identities=18% Similarity=0.082 Sum_probs=47.4
Q ss_pred hCCCchhHHHHHHHHHHHHHHhhHHHHHhhcCcCCchhhHhhhhhcchhhhhHHhhhcCCc--chhHHHHHHHHHHHHHH
Q 043501 58 FEGANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPE--ALPFCAIAYALTGIFGS 135 (152)
Q Consensus 58 igG~~~slta~~vi~tGi~G~~~g~~ll~~~~I~~~~a~GlalG~~aHaiGTa~a~~~~~~--~ga~aslam~l~gi~t~ 135 (152)
+|+ +-.+...+-+++|+.|+...+...-..++-+-.|-+++|+...----.++ +|.+ .--.+++.+.++=++..
T Consensus 6 ~G~-~DGlvt~~~~v~G~aga~~~~~~i~~~Gl~~~iA~a~SMa~G~YlS~kse---~d~~~~~p~~~al~s~~sf~~g~ 81 (149)
T cd02431 6 LGL-NDALVEITGALAGLTGAINNTILVGLSGLIVGIAAALSMAIGAYLSTKSE---SGVKESNPVKSALYTGIAYIIGV 81 (149)
T ss_pred ccc-cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HhHHhcchHHHHHHHHHHHHHHH
Confidence 455 56777888889999998888888777777777777777776554322222 1111 12345555555555554
Q ss_pred HH
Q 043501 136 LI 137 (152)
Q Consensus 136 i~ 137 (152)
++
T Consensus 82 ~i 83 (149)
T cd02431 82 VI 83 (149)
T ss_pred HH
Confidence 44
No 64
>COG4129 Predicted membrane protein [Function unknown]
Probab=33.74 E-value=2.2e+02 Score=24.90 Aligned_cols=74 Identities=20% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhHHHHHhhcCcCCchhh
Q 043501 17 TLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIAR 96 (152)
Q Consensus 17 ~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~g~~ll~~~~I~~~~a~ 96 (152)
+.++...++++++++|.|. |-+.=-.=-+.+...... .--.+.=-+..=.+|++++-.++-.++ .+|+..
T Consensus 16 t~ia~~La~~ia~~l~~~~-------~~~A~i~AV~~l~~t~~~--s~~~~~~r~~g~~iG~~~a~l~~~l~g-~~~~~~ 85 (332)
T COG4129 16 TGLAAGLALLIAHLLGLPQ-------PAFAGISAVLCLSPTIKR--SLKRALQRLLGNALGAILAVLFFLLFG-QNPIAF 85 (332)
T ss_pred HHHHHHHHHHHHHHhCCCc-------hHHHHHHHhhcccCcchH--HHHHHHHHHHHHHHHHHHHHHHHHHcC-ccHHHH
Q ss_pred Hhhh
Q 043501 97 GIAT 100 (152)
Q Consensus 97 Glal 100 (152)
|+..
T Consensus 86 ~v~~ 89 (332)
T COG4129 86 GVVL 89 (332)
T ss_pred HHHH
No 65
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=32.52 E-value=4.9e+02 Score=25.47 Aligned_cols=80 Identities=10% Similarity=0.048 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHH----HHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhHHH
Q 043501 8 EIFMSVILSTLFSLYSTALAGRLVGLEPSLTV----SILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQA 83 (152)
Q Consensus 8 ~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~----Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~g~~ 83 (152)
.++.-++++.+.=++.+++.++++|++..... .|.+|....=+...+..+.|=.++..-..+++..=++-.+++|.
T Consensus 352 ~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Pl 431 (832)
T PLN03159 352 LLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPV 431 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHH
Confidence 33333445555566788889999999876544 47788877766777777765433444444333322334445555
Q ss_pred HHhh
Q 043501 84 TLDK 87 (152)
Q Consensus 84 ll~~ 87 (152)
+.++
T Consensus 432 v~~l 435 (832)
T PLN03159 432 VTVV 435 (832)
T ss_pred HHHH
Confidence 4443
No 66
>COG2261 Predicted membrane protein [Function unknown]
Probab=32.19 E-value=1.2e+02 Score=21.54 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHhhcCcCC
Q 043501 63 SSLTAAVVVVTGLIGANFVQATLDKLRFRD 92 (152)
Q Consensus 63 ~slta~~vi~tGi~G~~~g~~ll~~~~I~~ 92 (152)
...-...-++-|++|+.++.+++..++...
T Consensus 25 ~~~G~~~nIilGIVGA~vg~~l~~~~g~~~ 54 (82)
T COG2261 25 GGGGIFMNIILGIVGAFVGGWLLGALGFGG 54 (82)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345567778899999999999999887544
No 67
>PF14068 YuiB: Putative membrane protein
Probab=31.68 E-value=84 Score=23.20 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=28.3
Q ss_pred HHHhhCCCchhHHHHHHHHHHHHHHhhHHHHHhhcCcCC
Q 043501 54 IVSLFEGANSSLTAAVVVVTGLIGANFVQATLDKLRFRD 92 (152)
Q Consensus 54 is~~igG~~~slta~~vi~tGi~G~~~g~~ll~~~~I~~ 92 (152)
.-+++.+ -..+=..+..+|..|+++..+..|.+|-+-
T Consensus 62 l~~~l~~--l~~~Di~il~~Gl~GAi~SG~tIr~LRk~G 98 (102)
T PF14068_consen 62 LGENLVS--LALADILILSSGLAGAIVSGITIRTLRKKG 98 (102)
T ss_pred HHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3345533 455667888999999999999999998764
No 68
>COG3817 Predicted membrane protein [Function unknown]
Probab=30.82 E-value=17 Score=31.31 Aligned_cols=40 Identities=18% Similarity=0.410 Sum_probs=34.1
Q ss_pred hhhHHHHH-HHHhhCCCchhHHHHHHHHHHHHHHhhHHHHHh
Q 043501 46 ITVALALS-IVSLFEGANSSLTAAVVVVTGLIGANFVQATLD 86 (152)
Q Consensus 46 vTtpiAi~-is~~igG~~~slta~~vi~tGi~G~~~g~~ll~ 86 (152)
+|.-|+++ .--+.|+ ||......-+++|.+|.++-|.--+
T Consensus 231 iTagIgvPilv~q~ga-nPaV~~AigM~sGfCGTLlTPMAAN 271 (313)
T COG3817 231 ITAGIGVPILVGQLGA-NPAVAGAIGMLSGFCGTLLTPMAAN 271 (313)
T ss_pred eecccccceeeeccCC-ChHHHHHHHHHhhhhhhccChhhhh
Confidence 57788888 5677888 8999999999999999999886543
No 69
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=30.16 E-value=2.8e+02 Score=21.93 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhh
Q 043501 65 LTAAVVVVTGLIGANFVQATLDK 87 (152)
Q Consensus 65 lta~~vi~tGi~G~~~g~~ll~~ 87 (152)
+..+.+++.|++|..+|..++|+
T Consensus 163 ~~~~~t~v~~~iG~~iG~kllkK 185 (189)
T TIGR02185 163 IMIVLTAVAGIAGVLIGKKLLKK 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778899999999999986
No 70
>PF10831 DUF2556: Protein of unknown function (DUF2556); InterPro: IPR022540 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=28.88 E-value=34 Score=22.09 Aligned_cols=15 Identities=7% Similarity=0.250 Sum_probs=11.5
Q ss_pred ChHhhHHHHHHHHHH
Q 043501 1 LVKRHAAEIFMSVIL 15 (152)
Q Consensus 1 ~lk~~~~~il~~~~~ 15 (152)
.+||||+-++..+.+
T Consensus 1 mirky~wlvvfav~~ 15 (53)
T PF10831_consen 1 MIRKYWWLVVFAVFV 15 (53)
T ss_pred CcceehhHHHHHHHH
Confidence 379999988876654
No 71
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=28.11 E-value=86 Score=24.86 Aligned_cols=22 Identities=9% Similarity=0.179 Sum_probs=16.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHH
Q 043501 2 VKRHAAEIFMSVILSTLFSLYS 23 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~~~~ 23 (152)
+||||+.|++..+++++.+...
T Consensus 17 l~r~~~~ill~~ll~~~~a~~~ 38 (226)
T TIGR01006 17 LWKRKLLILIVALIFLIISFIY 38 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888777776666443
No 72
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=28.00 E-value=1.2e+02 Score=23.15 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=26.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043501 2 VKRHAAEIFMSVILSTLFSLYSTALAGRLV 31 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~l 31 (152)
++++|++|++.+.+++...+.++-++.+++
T Consensus 85 l~~~~~~Il~~~iiST~lv~~vtg~~~~~l 114 (128)
T COG1380 85 LAADGLPILVVIIISTLLVLLVTGWVVQLL 114 (128)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999888777654
No 73
>COG2855 Predicted membrane protein [Function unknown]
Probab=27.66 E-value=1.9e+02 Score=25.58 Aligned_cols=68 Identities=24% Similarity=0.162 Sum_probs=44.5
Q ss_pred hhHHHHHhhcCcCCchhhHhhhhhc----chhhhhHHhhhcCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 043501 79 NFVQATLDKLRFRDPIARGIATASS----AHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSLL 148 (152)
Q Consensus 79 ~~g~~ll~~~~I~~~~a~GlalG~~----aHaiGTa~a~~~~~~~ga~aslam~l~gi~t~i~~~~P~~~~~l~ 148 (152)
+++-++=|++|.|...+.=++-|++ |-...++-..+.++|+-+.+--...+.|.+..++ .|++.+++.
T Consensus 108 ~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~ll--yP~l~~~l~ 179 (334)
T COG2855 108 LFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLL--YPLLYPLLG 179 (334)
T ss_pred HHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHH--HHHHHHHhC
Confidence 3444555678888877654444443 3334444445567777788877788888888776 589888763
No 74
>COG0730 Predicted permeases [General function prediction only]
Probab=25.77 E-value=3.5e+02 Score=21.69 Aligned_cols=76 Identities=18% Similarity=0.132 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHh-hhhhhhHHHHHHHHhh-CCCchhHHHH-HHHHHHHHHHhhHHHHHhhcCcCCchhhH
Q 043501 21 LYSTALAGRLVGLEPSLTVSIL-PRCITVALALSIVSLF-EGANSSLTAA-VVVVTGLIGANFVQATLDKLRFRDPIARG 97 (152)
Q Consensus 21 ~~~~~~l~~~lgl~~~~~~Sl~-pkSvTtpiAi~is~~i-gG~~~slta~-~vi~tGi~G~~~g~~ll~~~~I~~~~a~G 97 (152)
....+.+....+.+.+...... .+...+...-...-.. .| ....... .....+++|+-+|.++.++.+ ++..-+.
T Consensus 161 ~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~l~~g~~~G~~lG~~l~~~~~-~~~lr~~ 238 (258)
T COG0730 161 FGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALG-AVDWPLALLLAVGSILGAYLGARLARRLS-PKVLRRL 238 (258)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHH
Confidence 3455677777777755443332 2333333333332332 35 4666666 888899999999999999877 4444443
Q ss_pred h
Q 043501 98 I 98 (152)
Q Consensus 98 l 98 (152)
+
T Consensus 239 ~ 239 (258)
T COG0730 239 F 239 (258)
T ss_pred H
Confidence 3
No 75
>cd01059 CCC1_like CCC1-related family of proteins. CCC1_like: This protein family includes the proteins related to CCC1, a yeast vacuole transmembrane protein responsible for the iron and manganese transport from the cytosol into vacuole. It also includes the proteins similar to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation.
Probab=25.68 E-value=1.9e+02 Score=21.70 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=40.2
Q ss_pred hCCCchhHHHHHHHHHHHHHHhhHHHHHhhcCcCCchhhHhhhhhcchhhhhHHhhhcCCcchhHHHHHHHHHHHHHHHH
Q 043501 58 FEGANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLI 137 (152)
Q Consensus 58 igG~~~slta~~vi~tGi~G~~~g~~ll~~~~I~~~~a~GlalG~~aHaiGTa~a~~~~~~~ga~aslam~l~gi~t~i~ 137 (152)
+|+ +-.+...+.++.|+.|+...+...-..++-+-++-+++|+...+ ..|+.|++ .+++.+.++=++..++
T Consensus 6 ~G~-~DGivs~~~~v~G~~~a~~~~~~il~~Gl~~~ia~a~Sma~g~y------ls~~~e~~--~~al~~~~s~~~g~li 76 (143)
T cd01059 6 LGA-NDGLVSTFALVAGVAAAGDSTKAILLAGLAGLVAGAISMAAGEY------VSVKSQRD--KAALASGLSFILGGLL 76 (143)
T ss_pred ecc-cchhHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHH------HHHhhHHh--HHHHHHHHHHHHHHHH
Confidence 345 45666667788888887776666666666666666666554433 23333332 4455555444444443
No 76
>PF04186 FxsA: FxsA cytoplasmic membrane protein ; InterPro: IPR007313 This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its overexpression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.; GO: 0016020 membrane
Probab=25.66 E-value=2.8e+02 Score=20.45 Aligned_cols=86 Identities=16% Similarity=0.256 Sum_probs=45.9
Q ss_pred HHHHHhhCCCchhHHHHHHHHHHHHHHhhHHHHHh-h-cCcCCchhhHhhhhhcchhhhhHHhhhcCCcchhHHHHHHHH
Q 043501 52 LSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLD-K-LRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYAL 129 (152)
Q Consensus 52 i~is~~igG~~~slta~~vi~tGi~G~~~g~~ll~-~-~~I~~~~a~GlalG~~aHaiGTa~a~~~~~~~ga~aslam~l 129 (152)
+.+++.+|. -.|...++.|+++|..+-..--. . .++++...+|- . -..... |.-.-..+++-+.+
T Consensus 16 i~v~~~iG~---~~tll~vi~t~~lG~~llr~~g~~~~~~~~~~~~~g~---~-----p~~~~~--~~~~~~~gg~LLi~ 82 (119)
T PF04186_consen 16 ILVGSWIGF---LWTLLLVILTAVLGIWLLRRQGRRALRRLQQSLRQGE---M-----PGEELL--DGALLAVGGVLLII 82 (119)
T ss_pred HHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---c-----cHHHHH--HHHHHHHHHHHHHh
Confidence 567788854 56777788888888765443211 1 12333333220 0 111111 22223556666666
Q ss_pred HHHHHHH---HhhhHHHHHHHHHh
Q 043501 130 TGIFGSL---ICSVPAVRQSLLAI 150 (152)
Q Consensus 130 ~gi~t~i---~~~~P~~~~~l~~~ 150 (152)
=|.+|.+ +.-+|+.++++...
T Consensus 83 PGflTD~lGllLllP~~R~~~~~~ 106 (119)
T PF04186_consen 83 PGFLTDILGLLLLLPPVRRLLRRL 106 (119)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHH
Confidence 6777632 33579998887653
No 77
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=24.46 E-value=2.2e+02 Score=26.79 Aligned_cols=41 Identities=24% Similarity=0.451 Sum_probs=33.7
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCChHHHHHHh
Q 043501 2 VKRHAAEIFMSVILSTLFSLYSTALAGR-----LVGLEPSLTVSIL 42 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~~~~~~~l~~-----~lgl~~~~~~Sl~ 42 (152)
+.++++++....+++.++++..++++++ .||+.|+-...++
T Consensus 169 i~~~~~~l~~~~vl~lligl~ga~~la~~ikr~~~glEP~EIa~l~ 214 (537)
T COG3290 169 ILEFLRPLALIVVLGLLIGLLGAWILARHIKRQMLGLEPEEIATLL 214 (537)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5788999999999999999999999986 5899887554443
No 78
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=24.20 E-value=2.3e+02 Score=19.29 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043501 5 HAAEIFMSVILSTLFSLYSTALAGRLV 31 (152)
Q Consensus 5 ~~~~il~~~~~g~~~~~~~~~~l~~~l 31 (152)
++++++.+...|-...-..+.++++++
T Consensus 31 ~~~~V~~G~~~al~~~~~lav~~G~~l 57 (78)
T PF01169_consen 31 NPWPVFAGATLALALATGLAVLLGSWL 57 (78)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999888888888888887
No 79
>PRK13664 hypothetical protein; Provisional
Probab=23.88 E-value=1.3e+02 Score=20.19 Aligned_cols=21 Identities=5% Similarity=0.157 Sum_probs=16.7
Q ss_pred hHhhHHHHHHHHHHHHHHHHH
Q 043501 2 VKRHAAEIFMSVILSTLFSLY 22 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~~~ 22 (152)
+.+||+.+++-+++|.+...+
T Consensus 4 LadyWWilill~lvG~i~N~i 24 (62)
T PRK13664 4 LAKYWWILVLVFLVGVLLNVI 24 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678999988888888877654
No 80
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=23.36 E-value=3e+02 Score=23.96 Aligned_cols=77 Identities=25% Similarity=0.207 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhcCcCCchhhHhhhhhcc-hhhhh-HHhhhcCCc---chhHHHHHHHHHHHHHHHHhhh
Q 043501 66 TAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSA-HGLGT-AALSAKEPE---ALPFCAIAYALTGIFGSLICSV 140 (152)
Q Consensus 66 ta~~vi~tGi~G~~~g~~ll~~~~I~~~~a~GlalG~~a-HaiGT-a~a~~~~~~---~ga~aslam~l~gi~t~i~~~~ 140 (152)
....+++++.++...+ |+++- ++-..|++.++++ .++-+ |...+.++. ...-++.+..-..+++.++ .
T Consensus 232 ~~~~~~~t~~~~~~~~----Rl~~~-~~g~~g~a~~ttaG~aic~pAAvaa~~p~~~~~~~~at~~VA~~vivt~il--~ 304 (326)
T PRK05274 232 GVAVVAVTGIPLYLAD----RLIGG-GNGVAGAAAGSTAGNAVATPAAVAAADPSFAPFAPAATAQVAAAVIVTAIL--A 304 (326)
T ss_pred hhhHhhccchhhHhHh----heeec-CCCcchHHHHHHHHHHHHHHHHHHhhccccccchHhHHHHHHHHHHHHHHH--H
Confidence 3445566666666555 44543 4444466666443 22323 233332221 1223344444455577776 4
Q ss_pred HHHHHHHHH
Q 043501 141 PAVRQSLLA 149 (152)
Q Consensus 141 P~~~~~l~~ 149 (152)
|++.+|+.+
T Consensus 305 P~l~~~~~k 313 (326)
T PRK05274 305 PILTAWWSK 313 (326)
T ss_pred HHHHHHHHH
Confidence 888887754
No 81
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=22.84 E-value=3.9e+02 Score=23.26 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhCCChH----HHHHHhhhhhhhHHHHHHHHh-hCCCchhHHH----HHHHHHHHHHHhhHHHHHhhcC
Q 043501 19 FSLYSTALAGRLVGLEPS----LTVSILPRCITVALALSIVSL-FEGANSSLTA----AVVVVTGLIGANFVQATLDKLR 89 (152)
Q Consensus 19 ~~~~~~~~l~~~lgl~~~----~~~Sl~pkSvTtpiAi~is~~-igG~~~slta----~~vi~tGi~G~~~g~~ll~~~~ 89 (152)
+.....++..|+++.+++ -..+-.--++.+|=|+.-++. +.. ...-++ ..|++|.++.-++.+|+.|+.+
T Consensus 238 ~t~~~~~~~~Rl~~~~~g~~g~a~~ttaG~aic~pAAvaa~~p~~~~-~~~~at~~VA~~vivt~il~P~l~~~~~k~~~ 316 (326)
T PRK05274 238 VTGIPLYLADRLIGGGNGVAGAAAGSTAGNAVATPAAVAAADPSFAP-FAPAATAQVAAAVIVTAILAPILTAWWSKRVG 316 (326)
T ss_pred ccchhhHhHhheeecCCCcchHHHHHHHHHHHHHHHHHHhhcccccc-chHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344457788899977665 455577788888888755443 222 233333 3455666666666666667666
Q ss_pred cCC
Q 043501 90 FRD 92 (152)
Q Consensus 90 I~~ 92 (152)
-++
T Consensus 317 ~~~ 319 (326)
T PRK05274 317 KRA 319 (326)
T ss_pred ccc
Confidence 554
No 82
>KOG3030 consensus Lipid phosphate phosphatase and related enzymes of the PAP2 family [Lipid transport and metabolism]
Probab=21.95 E-value=85 Score=27.34 Aligned_cols=30 Identities=7% Similarity=0.171 Sum_probs=26.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 043501 3 KRHAAEIFMSVILSTLFSLYSTALAGRLVG 32 (152)
Q Consensus 3 k~~~~~il~~~~~g~~~~~~~~~~l~~~lg 32 (152)
|+||-.++.|.++|..++.+++......+.
T Consensus 237 kHHwsDV~aG~liG~~~A~~~~~~v~~~f~ 266 (317)
T KOG3030|consen 237 KHHWSDVLAGALIGAFVAYFLYRYVFPNFK 266 (317)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 789999999999999999999888877765
No 83
>COG1108 ZnuB ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]
Probab=21.75 E-value=5e+02 Score=22.01 Aligned_cols=84 Identities=21% Similarity=0.326 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CChHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhHHHHH
Q 043501 7 AEIFMSVILSTLFSLYSTALAGRLVG-LEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATL 85 (152)
Q Consensus 7 ~~il~~~~~g~~~~~~~~~~l~~~lg-l~~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~g~~ll 85 (152)
+.++.++.+|...+....+..-|-+- +.+.+.++.+| ++.++--+|- +|.+.+ +++|++.+..-.++-
T Consensus 16 ~alla~~li~~~~~~lG~flvlRr~sl~gdalsHa~L~-------Gval~~ll~~-~~~~~a---~~~~l~~a~~i~~l~ 84 (274)
T COG1108 16 NALLASLLIGIACGLLGTFLVLRRMSLMGDALSHAVLP-------GVALGFLLGI-NPLLGA---FIFGLLAALLIGYLR 84 (274)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHhh-hHHHHH---HHHHHHHHHHHHHHH
Confidence 66788888888888888888877543 45556666665 4445555643 566554 466788898999999
Q ss_pred hhcCcCCchhhHhhhh
Q 043501 86 DKLRFRDPIARGIATA 101 (152)
Q Consensus 86 ~~~~I~~~~a~GlalG 101 (152)
|+.|++++.+.|+-+-
T Consensus 85 ~~~~~~~D~aigiv~s 100 (274)
T COG1108 85 RRSKLKEDTAIGIVFS 100 (274)
T ss_pred hhccchHHHHHHHHHH
Confidence 9999999998887653
No 84
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=21.34 E-value=68 Score=26.46 Aligned_cols=49 Identities=20% Similarity=0.376 Sum_probs=37.5
Q ss_pred hhhHhhhhhcchhhhhHH-hhhcCCcchhHHHHHHHHHHHHHHHHhhhHHHH
Q 043501 94 IARGIATASSAHGLGTAA-LSAKEPEALPFCAIAYALTGIFGSLICSVPAVR 144 (152)
Q Consensus 94 ~a~GlalG~~aHaiGTa~-a~~~~~~~ga~aslam~l~gi~t~i~~~~P~~~ 144 (152)
+..--+||.+--++|++. +|..|.+.++. ++.++.|++|.-+-.+||+.
T Consensus 152 v~l~~amG~AliaV~~aTYLmAV~~d~asW--v~yglagviT~aMpaipW~~ 201 (207)
T PF10812_consen 152 VVLAGAMGAALIAVGAATYLMAVGSDTASW--VAYGLAGVITAAMPAIPWLY 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhheecCCCchh--hhhhhhhhhhcccccchhHH
Confidence 344557888889999998 88877776555 78889999998776677653
No 85
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=20.71 E-value=28 Score=30.36 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHhh-CCCchhHHHHHHHHHHHHHHhhHHHHHh
Q 043501 46 ITVALALSIVSLF-EGANSSLTAAVVVVTGLIGANFVQATLD 86 (152)
Q Consensus 46 vTtpiAi~is~~i-gG~~~slta~~vi~tGi~G~~~g~~ll~ 86 (152)
+|.-|+++.-=+- || ||++....-+.+|.+|.++-|.--+
T Consensus 227 iTaGIGiPfvi~~~Gg-nPaivgAlgM~aGyCGTLmTPMAAN 267 (308)
T PF06166_consen 227 ITAGIGIPFVIAQFGG-NPAIVGALGMTAGYCGTLMTPMAAN 267 (308)
T ss_pred HHhccCceEEEecCCC-CHHHHHHHHHhhcchhcccChhhhh
Confidence 4667777765444 87 8999999999999999999886544
No 86
>PF02706 Wzz: Chain length determinant protein; InterPro: IPR003856 A number of related proteins are involved in the synthesis of lipopolysaccharide, O-antigen polysaccharide, capsule polysaccharide and exopolysaccharides. Chain length determinant protein (or wzz protein) is involved in lipopolysaccharide (lps) biosynthesis, conferring a modal distribution of chain length on the O-antigen component of lps []. It gives rise to a reduced number of short chain molecules and increases in numbers of longer molecules, with a modal value of 20. The MPA/MPA2 proteins function in CPS and EPS polymerisation and export [].; GO: 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane; PDB: 4E2H_C 3B8P_A 4E2C_B 4E29_A 3B8O_G 4E2L_I 3B8N_D 3B8M_C.
Probab=20.63 E-value=33 Score=24.74 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=0.0
Q ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHHH
Q 043501 1 LVKRHAAEIFMSVILSTLFSLYSTALA 27 (152)
Q Consensus 1 ~lk~~~~~il~~~~~g~~~~~~~~~~l 27 (152)
.+||||+.++...+++.+++.+.++..
T Consensus 11 ~l~r~~~~i~~~~~l~~~~a~~~~~~~ 37 (152)
T PF02706_consen 11 ILWRRKWLIIIVTLLFAILAFIYAFFA 37 (152)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 368888888888887777776655443
No 87
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=20.34 E-value=2.7e+02 Score=24.80 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=29.2
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHh--CCC
Q 043501 2 VKRHAAEIFMSVILSTLFSLYSTALAGRLV--GLE 34 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~l--gl~ 34 (152)
+||||++|..=.+.+.+++.+..-+..+++ ++|
T Consensus 83 l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~ 117 (429)
T COG0025 83 LRRVWRSILVLALPLVLITALGIGLLAHWLLPGIP 117 (429)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh
Confidence 799999999999999999999988888888 555
No 88
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=20.15 E-value=1.3e+02 Score=19.82 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=16.8
Q ss_pred HHHHHHHHhhHHHHHhhcCcCCchhhHh
Q 043501 71 VVTGLIGANFVQATLDKLRFRDPIARGI 98 (152)
Q Consensus 71 i~tGi~G~~~g~~ll~~~~I~~~~a~Gl 98 (152)
.++|+.|.++|..=+|..|=+++..||+
T Consensus 17 ~~~~i~aiilG~ial~~i~r~~~~G~g~ 44 (62)
T PF13828_consen 17 GLLGIVAIILGHIALRQIRRSGQRGRGM 44 (62)
T ss_pred HHhHHHHHHHHHHHHHHHhccCCCChHH
Confidence 5677777777777776554444333333
Done!