Query 043501
Match_columns 152
No_of_seqs 108 out of 759
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:23:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 95.1 0.19 6.5E-06 41.8 10.5 81 4-88 70-155 (332)
2 2zy9_A Mg2+ transporter MGTE; 77.2 9.4 0.00032 32.9 8.2 82 3-109 377-459 (473)
3 3zux_A Transporter, ASBTNM; tr 73.9 23 0.0008 29.0 9.5 76 8-86 229-312 (332)
4 2b2h_A AMT-1, ammonium transpo 15.3 5.3E+02 0.018 21.8 8.6 32 63-95 269-300 (399)
5 1u7g_A Probable ammonium trans 13.6 2E+02 0.0069 24.3 4.4 26 70-95 288-313 (385)
6 3mkt_A Multi antimicrobial ext 13.0 5E+02 0.017 20.4 6.6 32 3-35 15-46 (460)
7 1rzs_A Antirepressor, regulato 12.7 1.7E+02 0.006 17.4 2.9 35 25-60 14-48 (61)
8 2kv5_A FST, putative uncharact 12.3 1.9E+02 0.0064 16.3 2.6 22 3-24 2-23 (33)
9 2k1k_A Ephrin type-A receptor 12.0 2.4E+02 0.0081 16.0 3.7 22 10-31 13-34 (38)
10 2ifo_A Inovirus; helical virus 11.7 2.1E+02 0.0071 17.2 2.9 26 64-89 18-43 (46)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=95.08 E-value=0.19 Score=41.85 Aligned_cols=81 Identities=21% Similarity=0.285 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHh-----hhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHH
Q 043501 4 RHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSIL-----PRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGA 78 (152)
Q Consensus 4 ~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~-----pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~ 78 (152)
|||+.+..++..--++--+.++.+++++++|+++...+. |-..+.+ -.++..|| |.++++..+.++-+++.
T Consensus 70 ~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~---v~t~~a~G-d~~la~~~~~~stll~~ 145 (332)
T 3zux_A 70 KHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASN---VMTYLARG-NVALSVAVTSVSTLTSP 145 (332)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHH---HHHHHTTC-CHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHH---HHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 788889888888888888999999999999999765544 4444444 38888988 89999999999999999
Q ss_pred hhHHHHHhhc
Q 043501 79 NFVQATLDKL 88 (152)
Q Consensus 79 ~~g~~ll~~~ 88 (152)
+.-|.++.++
T Consensus 146 ~~~Pl~~~l~ 155 (332)
T 3zux_A 146 LLTPAIFLML 155 (332)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 2
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=77.17 E-value=9.4 Score=32.86 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=52.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHH-HHHHHhhH
Q 043501 3 KRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVT-GLIGANFV 81 (152)
Q Consensus 3 k~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~t-Gi~G~~~g 81 (152)
|..|+++.++++.|.+.+.+.......|+| . .+|. ..+++.+++++. .++|. +-
T Consensus 377 ~~~~ke~~~~~~~g~~~~~~~~~~~~~~~~--~---------------------~~~~-~v~~a~~~~~~~a~~~g~-~~ 431 (473)
T 2zy9_A 377 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGH--P---------------------LLLP-VVGVSLVLIVFFANLVGA-ML 431 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--T---------------------TSHH-HHHHHHHHHHHHHHHHHT-TH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h---------------------HHHH-HHHHHHHHHHHHHHHHHH-HH
Confidence 445778888998888888888776666644 1 1222 234444444444 44454 77
Q ss_pred HHHHhhcCcCCchhhHhhhhhcchhhhh
Q 043501 82 QATLDKLRFRDPIARGIATASSAHGLGT 109 (152)
Q Consensus 82 ~~ll~~~~I~~~~a~GlalG~~aHaiGT 109 (152)
|.+++++|+|-..+-|--+-+..-.+|.
T Consensus 432 p~~~~~~~~DPa~~s~p~itt~~D~~g~ 459 (473)
T 2zy9_A 432 PFLLRRLGVDPALVSNPLVATLSDVTGL 459 (473)
T ss_dssp HHHHHHHTCCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCccccccchHHHHHHHHHH
Confidence 9999999999887777665555544443
No 3
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=73.89 E-value=23 Score=29.04 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHh----hhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHH----HHh
Q 043501 8 EIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSIL----PRCITVALALSIVSLFEGANSSLTAAVVVVTGLI----GAN 79 (152)
Q Consensus 8 ~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~----pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~----G~~ 79 (152)
.++..+++=..++...+++++|++|.|++...++. .|.. ..|+.++...=+.+| ..+.-..+-.+. |+.
T Consensus 229 ~v~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs--~lai~lA~~~F~~~p-~~alp~~iy~~~q~i~~~~ 305 (332)
T 3zux_A 229 LIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNS--GLAAALAAAHFAAAP-VVAVPGALFSVWHNISGSL 305 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCH--HHHHHHHHHHSTTCG-GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccH--HHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHHH
Confidence 34444444455777888999999999998776644 3655 455555554433234 444444444444 444
Q ss_pred hHHHHHh
Q 043501 80 FVQATLD 86 (152)
Q Consensus 80 ~g~~ll~ 86 (152)
+..++-|
T Consensus 306 la~~~~~ 312 (332)
T 3zux_A 306 LATYWAA 312 (332)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 4444433
No 4
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=15.29 E-value=5.3e+02 Score=21.84 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHhhcCcCCchh
Q 043501 63 SSLTAAVVVVTGLIGANFVQATLDKLRFRDPIA 95 (152)
Q Consensus 63 ~slta~~vi~tGi~G~~~g~~ll~~~~I~~~~a 95 (152)
|--+.++-++.|++-.. +..+.+++||||+.-
T Consensus 269 p~~A~iiG~iag~i~~~-~~~l~~kl~iDD~l~ 300 (399)
T 2b2h_A 269 VKGAIVIGLVAGIVCYL-AMDFRIKKKIDESLD 300 (399)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHTTCCCTTC
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCC
Confidence 33333444445554332 336778899999853
No 5
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=13.65 E-value=2e+02 Score=24.34 Aligned_cols=26 Identities=38% Similarity=0.345 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhHHHHHhhcCcCCchh
Q 043501 70 VVVTGLIGANFVQATLDKLRFRDPIA 95 (152)
Q Consensus 70 vi~tGi~G~~~g~~ll~~~~I~~~~a 95 (152)
-++.|++-...-..+.+++|+||+.-
T Consensus 288 G~iag~i~~~~~~~l~~~l~iDD~l~ 313 (385)
T 1u7g_A 288 GVVAGLAGLWGVTMLKRLLRVDDPCD 313 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCCGGG
T ss_pred HhHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 33444443322333556799999854
No 6
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=12.95 E-value=5e+02 Score=20.40 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=26.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Q 043501 3 KRHAAEIFMSVILSTLFSLYSTALAGRLVGLEP 35 (152)
Q Consensus 3 k~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~ 35 (152)
.|+..|+.++.+...+.+.+-...+++ +|-+.
T Consensus 15 ~~~~~p~~~~~~~~~~~~~v~~~~~~~-lg~~~ 46 (460)
T 3mkt_A 15 IKLATPVLIASVAQTGMGFVDTIMAGG-VSAID 46 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHH
Confidence 467788889999999999999999999 88544
No 7
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=12.66 E-value=1.7e+02 Score=17.37 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=25.3
Q ss_pred HHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHhhCC
Q 043501 25 ALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 60 (152)
Q Consensus 25 ~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG 60 (152)
--+|+.+|.++...--+- +++..--.+.+++.+||
T Consensus 14 ~~lA~~lGvs~~~Vs~we-~~~p~~~~~~i~~~~~g 48 (61)
T 1rzs_A 14 RAVAKALGISDAAVSQWK-EVIPEKDAYRLEIVTAG 48 (61)
T ss_dssp HHHHHHHTCCHHHHHHCC-SBCCHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCHHHHHHHH-hhCCHHHHHHHHHHHCC
Confidence 457889999987776664 44444456688998887
No 8
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=12.34 E-value=1.9e+02 Score=16.34 Aligned_cols=22 Identities=9% Similarity=0.237 Sum_probs=15.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHH
Q 043501 3 KRHAAEIFMSVILSTLFSLYST 24 (152)
Q Consensus 3 k~~~~~il~~~~~g~~~~~~~~ 24 (152)
+..+..|+..+++|.++.++.-
T Consensus 2 ~~i~~~IIaPivVGvvl~L~d~ 23 (33)
T 2kv5_A 2 KDLMSLVIAPIFVGLVLEMISR 23 (33)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888777653
No 9
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=11.96 E-value=2.4e+02 Score=16.02 Aligned_cols=22 Identities=14% Similarity=-0.013 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 043501 10 FMSVILSTLFSLYSTALAGRLV 31 (152)
Q Consensus 10 l~~~~~g~~~~~~~~~~l~~~l 31 (152)
+.++.+|+++++.....+.+++
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHHHHH
Confidence 4677777777666555555443
No 10
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=11.74 E-value=2.1e+02 Score=17.23 Aligned_cols=26 Identities=4% Similarity=-0.034 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHhhcC
Q 043501 64 SLTAAVVVVTGLIGANFVQATLDKLR 89 (152)
Q Consensus 64 slta~~vi~tGi~G~~~g~~ll~~~~ 89 (152)
+-|...-+=.-++|.+.+-+++||.|
T Consensus 18 a~t~i~~IG~aVLgV~v~i~v~k~IR 43 (46)
T 2ifo_A 18 AAGPIAAIGGAVLTVMVGIKVYKWVR 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445667777777777753
Done!