Query 043501
Match_columns 152
No_of_seqs 108 out of 759
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 09:23:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043501.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043501hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 77.7 5.4 0.00039 28.6 8.0 71 3-98 79-150 (173)
2 d1u7ga_ f.44.1.1 (A:) Ammonium 14.3 88 0.0064 24.3 4.4 25 72-96 288-312 (383)
3 d1svda2 d.58.9.1 (A:16-142) Ri 7.7 11 0.0008 26.0 -3.0 24 69-92 92-115 (127)
4 d2d69a2 d.58.9.1 (A:8-133) Rib 7.6 12 0.00088 25.7 -2.9 22 71-92 94-115 (126)
5 d1bwva2 d.58.9.1 (A:7-149) Rib 5.9 14 0.001 25.9 -3.4 23 70-92 110-132 (144)
6 d1wdda2 d.58.9.1 (A:11-150) Ri 5.9 16 0.0011 25.5 -3.1 23 70-92 105-127 (140)
7 d1geha2 d.58.9.1 (A:12-136) Ri 5.8 17 0.0012 24.9 -3.0 22 71-92 93-114 (125)
8 d3b60a2 f.37.1.1 (A:10-328) Mu 4.9 3.5E+02 0.026 17.7 4.0 17 2-18 11-27 (319)
9 d2cvza1 a.100.1.1 (A:158-289) 4.3 4.3E+02 0.031 16.1 4.5 34 13-46 14-47 (132)
10 d2hyda2 f.37.1.1 (A:1-323) Put 4.3 2.3E+02 0.017 18.9 2.4 19 2-20 9-27 (323)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=77.70 E-value=5.4 Score=28.63 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=43.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHH-HHHHHHHhhH
Q 043501 3 KRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVV-VTGLIGANFV 81 (152)
Q Consensus 3 k~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi-~tGi~G~~~g 81 (152)
|.-++++.++.+.|...++.. ....++.+-+. ++. ..+++-.+++ +..++|. +-
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~-~~~~~~~~~~~----------------------l~~-vi~~sl~~~~~ia~~~G~-~l 133 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLL-VGKVYWDGHPL----------------------LLP-VVGVSLVLIVFFANLVGA-ML 133 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHTSCCS----------------------SCH-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhhccccH----------------------HHH-HHHHHHHHHHHHHHHHHH-HH
Confidence 556788899999998888765 33444443211 222 2333333333 3455555 67
Q ss_pred HHHHhhcCcCCchhhHh
Q 043501 82 QATLDKLRFRDPIARGI 98 (152)
Q Consensus 82 ~~ll~~~~I~~~~a~Gl 98 (152)
|.++|++|.|...+-|-
T Consensus 134 Plll~klg~DPA~aS~P 150 (173)
T d2yvxa3 134 PFLLRRLGVDPALVSNP 150 (173)
T ss_dssp HHHHHHTSCCGGGSCST
T ss_pred HHHHHHhCCChhhhhhh
Confidence 99999999987665543
No 2
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=14.33 E-value=88 Score=24.32 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=13.8
Q ss_pred HHHHHHHhhHHHHHhhcCcCCchhh
Q 043501 72 VTGLIGANFVQATLDKLRFRDPIAR 96 (152)
Q Consensus 72 ~tGi~G~~~g~~ll~~~~I~~~~a~ 96 (152)
+.|++-...-+++-+++|+|||..-
T Consensus 288 i~g~i~~~~~~~l~~~~~iDD~~~~ 312 (383)
T d1u7ga_ 288 VAGLAGLWGVTMLKRLLRVDDPCDV 312 (383)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCGGGH
T ss_pred hccHHHHHHHHHHHhhcccccccce
Confidence 3343333333334457899998654
No 3
>d1svda2 d.58.9.1 (A:16-142) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Halothiobacillus neapolitanus [TaxId: 927]}
Probab=7.74 E-value=11 Score=25.96 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhHHHHHhhcCcCC
Q 043501 69 VVVVTGLIGANFVQATLDKLRFRD 92 (152)
Q Consensus 69 ~vi~tGi~G~~~g~~ll~~~~I~~ 92 (152)
--++|.|+|.++|-.-+|-+|+.|
T Consensus 92 ~n~ltsI~GNvfGmKal~alRLeD 115 (127)
T d1svda2 92 VNVFTSLVGNVFGFKAVRGLRLED 115 (127)
T ss_dssp HHHHHHHHSSGGGCTTEEEEEEEE
T ss_pred hHHHHHhcccccchhhhhhhhhhh
Confidence 346778999999999999888877
No 4
>d2d69a2 d.58.9.1 (A:8-133) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=7.56 E-value=12 Score=25.65 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=18.6
Q ss_pred HHHHHHHHhhHHHHHhhcCcCC
Q 043501 71 VVTGLIGANFVQATLDKLRFRD 92 (152)
Q Consensus 71 i~tGi~G~~~g~~ll~~~~I~~ 92 (152)
++|.|+|.++|-.-+|.+|+.|
T Consensus 94 lltsI~GNvfG~kav~aLRLeD 115 (126)
T d2d69a2 94 LFSAVAGNVFGMKALKNLRLLD 115 (126)
T ss_dssp HHHHHTTGGGGCTTEEEEEEEE
T ss_pred HHHHhhccccchhhhhhhhhhh
Confidence 4677899999999888888876
No 5
>d1bwva2 d.58.9.1 (A:7-149) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=5.93 E-value=14 Score=25.94 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhHHHHHhhcCcCC
Q 043501 70 VVVTGLIGANFVQATLDKLRFRD 92 (152)
Q Consensus 70 vi~tGi~G~~~g~~ll~~~~I~~ 92 (152)
-++|.|+|.++|-.-+|-+|++|
T Consensus 110 nlltsI~GNVFGfKav~aLRLeD 132 (144)
T d1bwva2 110 NLTASIIGNVFGFKAVKALRLED 132 (144)
T ss_dssp HHHHHHTSSGGGCTTEEEEEEEE
T ss_pred HHHHHhcccccchhhhhhhhhcc
Confidence 56788999999999998888876
No 6
>d1wdda2 d.58.9.1 (A:11-150) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=5.88 E-value=16 Score=25.50 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhHHHHHhhcCcCC
Q 043501 70 VVVTGLIGANFVQATLDKLRFRD 92 (152)
Q Consensus 70 vi~tGi~G~~~g~~ll~~~~I~~ 92 (152)
=++|.|+|.++|-.-+|-+|+.|
T Consensus 105 nlltsIvGNvfGmKav~alRLeD 127 (140)
T d1wdda2 105 NMFTSIVGNVFGFKALRALRLED 127 (140)
T ss_dssp HHHHHHHSSGGGBTTEEEEEEEE
T ss_pred HHHHHhhccccchhhhhhcchhh
Confidence 46778999999999888888876
No 7
>d1geha2 d.58.9.1 (A:12-136) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]}
Probab=5.76 E-value=17 Score=24.85 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=18.8
Q ss_pred HHHHHHHHhhHHHHHhhcCcCC
Q 043501 71 VVTGLIGANFVQATLDKLRFRD 92 (152)
Q Consensus 71 i~tGi~G~~~g~~ll~~~~I~~ 92 (152)
++|.|+|.++|-.-+|.+|+.|
T Consensus 93 lltsi~GNvfG~kal~alRLeD 114 (125)
T d1geha2 93 LLASIAGNIFGMKRVKGLRLED 114 (125)
T ss_dssp HHHHHTSGGGGCTTEEECEEEE
T ss_pred HHHHhhccccccchhhcceecc
Confidence 7888999999998888888766
No 8
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=4.93 E-value=3.5e+02 Score=17.68 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=10.9
Q ss_pred hHhhHHHHHHHHHHHHH
Q 043501 2 VKRHAAEIFMSVILSTL 18 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~ 18 (152)
+|+|++.++.++++..+
T Consensus 11 ~~~~k~~l~~~~i~~~~ 27 (319)
T d3b60a2 11 IAPFKAGLIVAGIALIL 27 (319)
T ss_dssp HGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46777777776665543
No 9
>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}
Probab=4.28 E-value=4.3e+02 Score=16.14 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhh
Q 043501 13 VILSTLFSLYSTALAGRLVGLEPSLTVSILPRCI 46 (152)
Q Consensus 13 ~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSv 46 (152)
+..+.+.++.=+..+++..|+|++.....+-.|.
T Consensus 14 l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~ 47 (132)
T d2cvza1 14 LLAVNLWAAGEGLLALVKQGVSAEKALEVINASS 47 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhh
Confidence 3445556666778899999999999988876553
No 10
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=4.26 E-value=2.3e+02 Score=18.90 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=12.9
Q ss_pred hHhhHHHHHHHHHHHHHHH
Q 043501 2 VKRHAAEIFMSVILSTLFS 20 (152)
Q Consensus 2 lk~~~~~il~~~~~g~~~~ 20 (152)
+|+|++.++..++++.+.+
T Consensus 9 ~k~~k~~~~~~~~~~~~~~ 27 (323)
T d2hyda2 9 VKPYKYRIFATIIVGIIKF 27 (323)
T ss_dssp HGGGHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5778888877777665443
Done!