BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043502
(949 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 575 SRSFFLIT--DGGFT-FEY-LYAESVWLW--LRHDH---------STPMRGVLGNYNGSL 619
S+S LIT DG T +++ + A++V L LR+ H +T ++ +G G +
Sbjct: 22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81
Query: 620 YMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIGGPPWDGI 661
VDL GS + ++NE C + G + WDG+
Sbjct: 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 575 SRSFFLIT--DGGFT-FEY-LYAESVWLW--LRHDH---------STPMRGVLGNYNGSL 619
S+S LIT DG T +++ + A++V L LR+ H +T ++ +G G +
Sbjct: 22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81
Query: 620 YMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIGGPPWDGI 661
VDL GS + ++NE C + G + WDG+
Sbjct: 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 575 SRSFFLIT--DGGFT-FEY-LYAESVWLW--LRHDH---------STPMRGVLGNYNGSL 619
S+S LIT DG T +++ + A++V L LR+ H +T ++ +G G +
Sbjct: 22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81
Query: 620 YMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIGGPPWDGI 661
VDL GS + ++NE C + G + WDG+
Sbjct: 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 575 SRSFFLIT--DGGFT-FEY-LYAESVWLW--LRHDH---------STPMRGVLGNYNGSL 619
S+S LIT DG T +++ + A++V L LR+ H +T ++ +G G +
Sbjct: 22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81
Query: 620 YMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIGGPPWDGI 661
VDL GS + ++NE C + G + WDG+
Sbjct: 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123
>pdb|1N73|C Chain C, Fibrin D-Dimer, Lamprey Complexed With The Peptide Ligand:
Gly-His- Arg-Pro-Amide
pdb|1N73|F Chain F, Fibrin D-Dimer, Lamprey Complexed With The Peptide Ligand:
Gly-His- Arg-Pro-Amide
Length = 330
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 381 DESNEKFFSLFLTTSAGAVF---EYQIPKYSGTSQENQFSGGWISHLHPPHARAARGAVG 437
D+ +KF+ TT G +F E KY G+ E SG W++ H H + G
Sbjct: 217 DDPQDKFY----TTHLGMLFSTPERDNDKYEGSCAEQDGSGWWMNRCHAGHLN-GKYYFG 271
Query: 438 LPFQVGRTIFPLDDG 452
++ FP DDG
Sbjct: 272 GNYRKTDVEFPYDDG 286
>pdb|1LWU|C Chain C, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
pdb|1LWU|F Chain F, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
pdb|1LWU|I Chain I, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
pdb|1LWU|L Chain L, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
Length = 323
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 381 DESNEKFFSLFLTTSAGAVF---EYQIPKYSGTSQENQFSGGWISHLHPPHARAARGAVG 437
D+ +KF+ TT G +F E KY G+ E SG W++ H H + G
Sbjct: 217 DDPQDKFY----TTHLGMLFSTPERDNDKYEGSCAEQDGSGWWMNRCHAGHLN-GKYYFG 271
Query: 438 LPFQVGRTIFPLDDG 452
++ FP DDG
Sbjct: 272 GNYRKTDVEFPYDDG 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,416,205
Number of Sequences: 62578
Number of extensions: 1324059
Number of successful extensions: 2416
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2416
Number of HSP's gapped (non-prelim): 7
length of query: 949
length of database: 14,973,337
effective HSP length: 108
effective length of query: 841
effective length of database: 8,214,913
effective search space: 6908741833
effective search space used: 6908741833
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)