BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043502
         (949 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q22710|NAS26_CAEEL Zinc metalloproteinase nas-26 OS=Caenorhabditis elegans GN=toh-1
           PE=3 SV=4
          Length = 414

 Score = 40.8 bits (94), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 65/160 (40%), Gaps = 17/160 (10%)

Query: 441 QVGRTIFPLDDGRLAELHPSGLGGENSGPINQLSVRRKVSIKYV-------WSILDAPET 493
           QV     P D G L   H       ++  ++  ++  K  +KYV        + LDA   
Sbjct: 204 QVSPRRVPYDYGSLMHYHAVA----HAVKVSDFTIVPK-ELKYVTTMGTEKMAFLDAKVI 258

Query: 494 EGWNAEYCTEERSPLNCMAGTKDEPNDLGITRTARRRKGSQAQYDYLFPSISGG--RAQN 551
                    + R+ LNC+AG   +PN+  + R      G       L PS  GG   A +
Sbjct: 259 NDIYCPNACQGRNHLNCLAGGYPDPNNCNVCRCPEGLGGPDC--GRLQPSPCGGEIHASD 316

Query: 552 PIEEYSLPDNW-INNYFRLRVMHGSRSFFLITDGGFTFEY 590
             +  S P    ++ Y+R+ V  GSR  F ++DG F   Y
Sbjct: 317 QWQTLSSPSGRDVHCYWRISVPEGSRVRFRLSDGEFPCSY 356


>sp|P20095|PRP2_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
           PRP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
           S288c) GN=PRP2 PE=1 SV=1
          Length = 876

 Score = 35.8 bits (81), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 461 GLGGENSGPINQLSVRRKVSIKYVWSILDAPETEGWNAEYCTEERSPLNCMAGTKDEPND 520
           GL G++       S   K +++    I +A E +  N +   EE+   N MAG  D P+D
Sbjct: 103 GLLGDSENETKYASSNSKFNVEVTHKIKNAKEIDKINRQRMWEEQQLRNAMAGQSDHPDD 162

Query: 521 LGITRTARRRKGSQAQYDYLF 541
           + +       +GS  +YDY+F
Sbjct: 163 ITL-------EGSD-KYDYVF 175


>sp|O65493|XCP1_ARATH Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1
           SV=1
          Length = 355

 Score = 35.0 bits (79), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 713 ELFRENIVFVVGRNGRLYQY----NKVTELWHEHYQSQHLVLSILPGTAMRPPSASL 765
           E+FREN++ +  RN  +  Y    N+  +L HE ++ ++L L+    +  R PSA+ 
Sbjct: 73  EVFRENLMHIDQRNNEINSYWLGLNEFADLTHEEFKGRYLGLAKPQFSRKRQPSANF 129


>sp|Q9FHS6|FK119_ARATH F-box/kelch-repeat protein At5g43190 OS=Arabidopsis thaliana
           GN=At5g43190 PE=2 SV=1
          Length = 403

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 6/38 (15%)

Query: 49  KTDRFWEFREETNSWIEVELPYDLVSCVNDNCSKVGSI 86
           ++ + WEF+EET SWIEVE   D+V      C K  S+
Sbjct: 305 RSIKIWEFKEETESWIEVETLPDIV------CRKFTSV 336


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.135    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,128,222
Number of Sequences: 539616
Number of extensions: 16993462
Number of successful extensions: 36135
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 36127
Number of HSP's gapped (non-prelim): 10
length of query: 949
length of database: 191,569,459
effective HSP length: 127
effective length of query: 822
effective length of database: 123,038,227
effective search space: 101137422594
effective search space used: 101137422594
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)