Query 043502
Match_columns 949
No_of_seqs 36 out of 38
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 05:43:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03300 assembly_YfgL outer 98.3 7.5E-05 1.6E-09 77.5 21.5 224 575-827 145-375 (377)
2 TIGR03300 assembly_YfgL outer 98.3 0.00041 8.8E-09 72.1 24.9 231 572-831 62-297 (377)
3 PRK11138 outer membrane biogen 98.3 0.00032 6.9E-09 74.2 24.3 232 572-831 66-312 (394)
4 PRK11138 outer membrane biogen 98.2 0.00023 5E-09 75.2 21.7 224 575-827 160-390 (394)
5 PF13360 PQQ_2: PQQ-like domai 97.7 0.0065 1.4E-07 58.0 19.8 182 615-827 35-226 (238)
6 PF14870 PSII_BNR: Photosynthe 97.5 0.0048 1E-07 66.2 17.8 207 615-851 70-281 (302)
7 PF13360 PQQ_2: PQQ-like domai 97.2 0.072 1.6E-06 51.0 20.2 191 567-780 28-226 (238)
8 PRK13684 Ycf48-like protein; P 97.1 0.066 1.4E-06 57.2 20.0 228 575-837 65-294 (334)
9 PF14870 PSII_BNR: Photosynthe 97.0 0.078 1.7E-06 57.2 20.0 229 138-403 71-302 (302)
10 cd00216 PQQ_DH Dehydrogenases 96.9 0.94 2E-05 50.7 27.9 125 178-310 58-193 (488)
11 PLN00033 photosystem II stabil 96.7 0.28 6E-06 54.7 21.8 202 616-843 146-368 (398)
12 PF07938 Fungal_lectin: Fungal 96.7 0.067 1.4E-06 58.2 16.5 201 578-789 21-249 (311)
13 PF07938 Fungal_lectin: Fungal 96.7 0.011 2.3E-07 64.2 10.5 206 615-839 17-251 (311)
14 COG1520 FOG: WD40-like repeat 96.3 0.78 1.7E-05 48.8 21.2 161 572-743 108-278 (370)
15 PLN00033 photosystem II stabil 96.2 0.71 1.5E-05 51.6 21.0 192 616-827 189-395 (398)
16 COG1520 FOG: WD40-like repeat 96.1 0.92 2E-05 48.3 20.5 202 571-790 64-275 (370)
17 cd00216 PQQ_DH Dehydrogenases 96.0 3.8 8.2E-05 46.1 27.5 127 607-743 52-193 (488)
18 PRK13684 Ycf48-like protein; P 95.3 1.7 3.7E-05 46.7 19.1 214 575-826 108-326 (334)
19 PF14517 Tachylectin: Tachylec 94.8 0.025 5.4E-07 59.5 3.7 156 615-784 43-206 (229)
20 PF14517 Tachylectin: Tachylec 92.1 0.27 5.8E-06 52.0 5.8 152 566-732 35-203 (229)
21 TIGR03548 mutarot_permut cycli 91.8 9.9 0.00021 39.8 16.7 164 637-823 50-233 (323)
22 cd00200 WD40 WD40 domain, foun 91.4 11 0.00024 34.4 20.1 147 568-736 56-208 (289)
23 PHA02790 Kelch-like protein; P 90.6 20 0.00043 40.5 18.6 194 571-794 267-479 (480)
24 TIGR01063 gyrA DNA gyrase, A s 90.2 3.5 7.6E-05 50.0 13.2 205 184-408 499-721 (800)
25 PHA02713 hypothetical protein; 89.8 13 0.00029 42.9 16.8 197 595-823 282-523 (557)
26 PRK05560 DNA gyrase subunit A; 89.7 8.1 0.00018 47.0 15.6 229 181-444 548-793 (805)
27 TIGR02658 TTQ_MADH_Hv methylam 88.4 15 0.00033 41.0 15.4 148 230-404 49-222 (352)
28 cd00200 WD40 WD40 domain, foun 88.2 20 0.00044 32.7 23.1 214 574-831 20-247 (289)
29 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.2 7.6 0.00017 44.7 12.0 131 608-746 61-202 (527)
30 TIGR01063 gyrA DNA gyrase, A s 85.7 19 0.00042 43.9 15.5 228 181-444 546-790 (800)
31 TIGR02800 propeller_TolB tol-p 84.7 38 0.00082 36.0 15.4 71 231-303 194-268 (417)
32 KOG1900 Nuclear pore complex, 84.7 1.9 4.2E-05 54.5 6.8 77 755-831 178-283 (1311)
33 PRK05560 DNA gyrase subunit A; 84.5 11 0.00024 46.0 12.8 207 179-408 495-724 (805)
34 PLN02153 epithiospecifier prot 84.0 63 0.0014 34.4 19.0 137 594-744 110-293 (341)
35 PF03664 Glyco_hydro_62: Glyco 81.5 4.7 0.0001 43.9 7.4 102 710-850 134-243 (271)
36 PHA02713 hypothetical protein; 79.0 56 0.0012 38.0 15.3 184 588-797 322-545 (557)
37 TIGR03074 PQQ_membr_DH membran 78.7 1.8E+02 0.0038 36.1 21.6 134 607-742 185-353 (764)
38 PRK13979 DNA topoisomerase IV 77.5 45 0.00098 41.9 14.8 154 239-404 672-875 (957)
39 PF03984 DUF346: Repeat of unk 77.1 2.7 6E-05 34.4 3.1 18 815-832 4-21 (40)
40 PF08450 SGL: SMP-30/Gluconola 76.9 85 0.0018 31.4 17.4 141 616-784 11-164 (246)
41 TIGR03548 mutarot_permut cycli 76.8 1E+02 0.0023 32.4 18.4 133 597-743 51-202 (323)
42 PHA02790 Kelch-like protein; P 75.3 1.1E+02 0.0023 34.9 15.9 174 615-821 270-454 (480)
43 KOG4441 Proteins containing BT 74.0 1.1E+02 0.0023 36.2 15.9 219 596-843 312-556 (571)
44 PRK14131 N-acetylneuraminic ac 73.8 1.4E+02 0.0031 32.5 17.2 86 729-822 191-288 (376)
45 TIGR03075 PQQ_enz_alc_DH PQQ-d 72.5 26 0.00056 40.5 10.5 125 175-309 63-198 (527)
46 PF02239 Cytochrom_D1: Cytochr 71.5 11 0.00024 41.6 7.0 118 231-350 82-207 (369)
47 PF08450 SGL: SMP-30/Gluconola 67.5 67 0.0014 32.2 10.9 141 185-345 91-245 (246)
48 PF02333 Phytase: Phytase; In 67.3 26 0.00057 39.9 8.9 76 324-404 158-236 (381)
49 PRK02889 tolB translocation pr 66.5 1.6E+02 0.0035 32.6 14.6 17 230-246 199-215 (427)
50 KOG3669 Uncharacterized conser 65.2 87 0.0019 38.1 12.7 335 350-760 13-385 (705)
51 KOG0646 WD40 repeat protein [G 64.8 1.1E+02 0.0024 36.2 13.2 192 606-831 82-305 (476)
52 TIGR03547 muta_rot_YjhT mutatr 64.4 91 0.002 33.0 11.8 72 669-743 15-101 (346)
53 TIGR03547 muta_rot_YjhT mutatr 64.4 2E+02 0.0043 30.5 17.2 109 604-725 4-126 (346)
54 COG4447 Uncharacterized protei 60.2 1.4E+02 0.003 33.9 12.5 237 568-843 47-300 (339)
55 PRK05561 DNA topoisomerase IV 59.6 85 0.0018 38.5 11.8 150 238-404 507-665 (742)
56 PRK03629 tolB translocation pr 59.1 1.3E+02 0.0028 33.6 12.2 22 383-404 381-402 (429)
57 PF03984 DUF346: Repeat of unk 58.9 16 0.00034 30.2 3.9 22 769-790 5-26 (40)
58 TIGR03074 PQQ_membr_DH membran 57.6 2.5E+02 0.0054 34.8 15.2 167 574-744 259-488 (764)
59 PRK05137 tolB translocation pr 54.6 1.3E+02 0.0028 33.3 11.2 18 229-246 204-221 (435)
60 TIGR03866 PQQ_ABC_repeats PQQ- 54.2 2.2E+02 0.0047 27.7 19.2 20 717-736 84-104 (300)
61 PRK11028 6-phosphogluconolacto 54.2 2.8E+02 0.006 29.0 18.4 154 233-409 132-308 (330)
62 PHA03098 kelch-like protein; P 53.4 3.8E+02 0.0083 30.3 18.5 200 615-843 293-521 (534)
63 PRK04043 tolB translocation pr 53.0 1.8E+02 0.0038 32.9 12.2 60 229-303 190-267 (419)
64 PRK14131 N-acetylneuraminic ac 52.9 3.4E+02 0.0074 29.7 20.1 53 689-743 195-256 (376)
65 PRK11028 6-phosphogluconolacto 52.2 3E+02 0.0065 28.7 15.3 70 326-409 138-209 (330)
66 PRK04922 tolB translocation pr 52.1 1.9E+02 0.0042 32.0 12.1 19 229-247 206-224 (433)
67 COG4447 Uncharacterized protei 51.7 1.2E+02 0.0026 34.4 10.4 143 670-825 180-326 (339)
68 COG3386 Gluconolactonase [Carb 51.2 3E+02 0.0066 30.4 13.3 154 570-775 116-276 (307)
69 PRK13979 DNA topoisomerase IV 51.2 3.9E+02 0.0085 34.2 15.7 166 666-845 558-785 (957)
70 PRK00178 tolB translocation pr 51.1 88 0.0019 34.1 9.2 19 229-247 201-219 (430)
71 PF12768 Rax2: Cortical protei 51.0 2.2E+02 0.0048 31.2 12.1 139 688-836 21-189 (281)
72 PF10433 MMS1_N: Mono-function 50.9 55 0.0012 36.9 7.9 62 234-299 218-286 (504)
73 KOG2110 Uncharacterized conser 50.3 42 0.0009 38.6 6.8 86 246-345 151-249 (391)
74 PF07676 PD40: WD40-like Beta 49.5 16 0.00034 27.5 2.4 20 229-248 11-30 (39)
75 PRK04792 tolB translocation pr 48.3 3E+02 0.0065 31.1 13.0 18 232-249 267-285 (448)
76 PRK05137 tolB translocation pr 45.0 2.6E+02 0.0057 31.0 11.8 18 231-248 250-268 (435)
77 smart00602 VPS10 VPS10 domain. 44.6 6.2E+02 0.014 30.3 18.6 110 574-696 8-127 (612)
78 TIGR03866 PQQ_ABC_repeats PQQ- 44.3 3.1E+02 0.0067 26.7 15.8 20 284-303 85-105 (300)
79 KOG2444 WD40 repeat protein [G 43.3 28 0.0006 37.8 4.0 65 667-733 66-130 (238)
80 TIGR02800 propeller_TolB tol-p 42.4 1.9E+02 0.0042 30.8 10.0 17 232-248 283-299 (417)
81 KOG4441 Proteins containing BT 42.4 6E+02 0.013 30.3 14.7 181 614-822 282-484 (571)
82 KOG0315 G-protein beta subunit 41.9 3.3E+02 0.0072 30.7 11.7 139 670-832 135-287 (311)
83 smart00564 PQQ beta-propeller 40.5 31 0.00067 24.7 2.7 29 234-263 3-32 (33)
84 smart00706 TECPR Beta propelle 40.5 26 0.00057 26.3 2.4 31 657-687 2-34 (35)
85 PLN02193 nitrile-specifier pro 39.4 3.1E+02 0.0067 31.2 11.5 157 131-308 169-357 (470)
86 PF13449 Phytase-like: Esteras 39.3 3.1E+02 0.0067 29.8 11.0 16 571-586 27-42 (326)
87 PF04841 Vps16_N: Vps16, N-ter 39.0 5.1E+02 0.011 29.4 13.0 72 664-736 84-156 (410)
88 PF13570 PQQ_3: PQQ-like domai 38.6 26 0.00056 26.8 2.2 20 808-827 16-35 (40)
89 PRK04792 tolB translocation pr 37.5 5.4E+02 0.012 29.2 12.9 19 228-246 219-237 (448)
90 COG3386 Gluconolactonase [Carb 37.0 2.2E+02 0.0047 31.4 9.6 112 227-345 162-275 (307)
91 KOG0280 Uncharacterized conser 36.9 67 0.0014 36.4 5.7 110 670-799 132-248 (339)
92 PRK03629 tolB translocation pr 35.6 1.9E+02 0.0042 32.2 9.1 19 228-246 200-218 (429)
93 PLN02193 nitrile-specifier pro 35.2 7.3E+02 0.016 28.4 15.1 137 593-743 252-418 (470)
94 PHA00661 hypothetical protein 34.9 4.6E+02 0.01 32.8 12.6 110 339-455 488-602 (734)
95 PF06462 Hyd_WA: Propeller; I 34.8 37 0.00079 26.2 2.4 16 814-829 1-16 (32)
96 smart00564 PQQ beta-propeller 33.9 63 0.0014 23.1 3.4 28 670-697 5-32 (33)
97 PF14779 BBS1: Ciliary BBSome 33.8 74 0.0016 34.8 5.4 53 672-731 196-254 (257)
98 PRK00178 tolB translocation pr 33.5 4.2E+02 0.0092 29.0 11.0 18 231-248 247-265 (430)
99 PF07893 DUF1668: Protein of u 33.4 4.2E+02 0.0091 29.3 11.0 104 666-776 112-241 (342)
100 TIGR01061 parC_Gpos DNA topois 32.8 4.5E+02 0.0097 32.6 12.1 118 175-300 534-665 (738)
101 PF11715 Nup160: Nucleoporin N 32.4 2.1E+02 0.0046 32.6 8.9 136 163-303 78-250 (547)
102 COG5184 ATS1 Alpha-tubulin sup 32.3 7.7E+02 0.017 29.7 13.3 172 554-736 155-368 (476)
103 PF13570 PQQ_3: PQQ-like domai 32.1 38 0.00083 25.9 2.2 23 280-302 18-40 (40)
104 PF11725 AvrE: Pathogenicity f 31.8 6E+02 0.013 34.7 13.4 207 579-830 296-515 (1774)
105 PRK04922 tolB translocation pr 30.9 7.8E+02 0.017 27.4 19.7 18 231-248 252-270 (433)
106 PHA03098 kelch-like protein; P 30.8 8.4E+02 0.018 27.7 17.6 116 613-744 339-473 (534)
107 smart00602 VPS10 VPS10 domain. 30.7 1E+03 0.022 28.6 17.1 108 670-780 177-308 (612)
108 PRK01029 tolB translocation pr 29.6 2.6E+02 0.0056 31.5 8.9 17 232-248 286-303 (428)
109 KOG1520 Predicted alkaloid syn 28.3 1.1E+02 0.0025 35.1 5.9 65 239-303 136-209 (376)
110 cd01759 PLAT_PL PLAT/LH2 domai 27.4 2E+02 0.0043 27.9 6.5 65 210-278 16-86 (113)
111 PRK01742 tolB translocation pr 27.3 9E+02 0.02 27.0 13.2 19 229-247 206-224 (429)
112 PF07569 Hira: TUP1-like enhan 26.6 1.4E+02 0.0031 31.0 5.9 92 168-308 8-101 (219)
113 PLN02153 epithiospecifier prot 26.1 8.4E+02 0.018 26.1 19.9 141 668-822 82-260 (341)
114 PF07893 DUF1668: Protein of u 26.0 9.4E+02 0.02 26.7 12.7 120 670-801 75-224 (342)
115 KOG3669 Uncharacterized conser 25.9 7.6E+02 0.017 30.7 12.0 144 617-781 193-352 (705)
116 PF05787 DUF839: Bacterial pro 25.3 1.2E+03 0.026 27.8 15.3 93 570-677 252-367 (524)
117 PRK13616 lipoprotein LpqB; Pro 25.0 8.3E+02 0.018 29.5 12.2 105 266-401 456-564 (591)
118 COG2514 Predicted ring-cleavag 24.0 52 0.0011 36.2 2.2 70 597-666 86-168 (265)
119 KOG2048 WD40 repeat protein [G 23.9 1.5E+03 0.033 28.5 19.3 258 547-916 43-314 (691)
120 PRK05561 DNA topoisomerase IV 23.9 3.9E+02 0.0085 33.1 9.6 142 184-355 510-666 (742)
121 PRK02889 tolB translocation pr 23.5 1.1E+03 0.023 26.5 14.4 19 231-249 244-263 (427)
122 KOG4547 WD40 repeat-containing 23.4 5E+02 0.011 31.6 9.9 124 233-370 65-189 (541)
123 KOG0301 Phospholipase A2-activ 23.1 1.3E+03 0.028 29.2 13.3 179 580-793 154-363 (745)
124 COG5184 ATS1 Alpha-tubulin sup 23.0 3.4E+02 0.0073 32.5 8.4 146 670-826 184-362 (476)
125 KOG1900 Nuclear pore complex, 21.7 7.7E+02 0.017 32.9 11.6 167 268-447 177-379 (1311)
126 PF01011 PQQ: PQQ enzyme repea 21.6 89 0.0019 24.0 2.5 24 284-307 1-25 (38)
127 PF09565 RE_NgoFVII: NgoFVII r 21.1 90 0.0019 34.6 3.3 47 530-595 211-257 (296)
128 PF12768 Rax2: Cortical protei 21.1 3.3E+02 0.0072 29.9 7.5 93 664-761 40-147 (281)
129 COG3435 Gentisate 1,2-dioxygen 20.5 90 0.0019 35.5 3.2 38 882-919 303-340 (351)
130 PF10012 DUF2255: Uncharacteri 20.1 86 0.0019 30.9 2.6 37 619-655 30-66 (116)
No 1
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.35 E-value=7.5e-05 Score=77.52 Aligned_cols=224 Identities=18% Similarity=0.250 Sum_probs=127.3
Q ss_pred CceEEEEeeCCeeEEEEecCCEEEEEecCCCCCc----cccccccccceEEEeccCcEEEEEecCCCceeeeccCCCCCc
Q 043502 575 SRSFFLITDGGFTFEYLYAESVWLWLRHDHSTPM----RGVLGNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGR 650 (949)
Q Consensus 575 ~~s~fliTd~G~~fE~~~~~~~WlWl~H~h~T~m----~g~~g~~ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G~ 650 (949)
++.+|+.+.+|.+|=.=-..+.-+|-......++ ..++...++.+|+...+|.|.-=.-..-...|..-...+.|.
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~ 224 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR 224 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence 3466777777776644434455555432222111 123333556677767677665444333335664332222222
Q ss_pred eeecCCCCCCCCCcceeecccCcEEEEecCCeEeEEEEeceeeeeecCCCCCCcceEEeecccccccCeEEEEccCceEe
Q 043502 651 QVIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLY 730 (949)
Q Consensus 651 ~V~~G~pwdgipG~~~~vt~~dklF~vt~~GrLlq~tva~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~NGrLY 730 (949)
.-+. ....+.+. -+..++.+|+++.+|.|+-+-....+..|..-. + ....+ .+.++.||+...||+||
T Consensus 225 ~~~~--~~~~~~~~--p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~------~~~~p-~~~~~~vyv~~~~G~l~ 292 (377)
T TIGR03300 225 TELE--RLVDVDGD--PVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-S------SYQGP-AVDDNRLYVTDADGVVV 292 (377)
T ss_pred Cchh--hhhccCCc--cEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-C------CccCc-eEeCCEEEEECCCCeEE
Confidence 1000 00001011 122578999999999999988888888897631 1 11122 34577999999999999
Q ss_pred eecC--ceeeeeecCCCCceeeecCCCceecCCCCCCcceEEEEecCCCeEEEEEeCCC-CeEEeecCCCCCCceeecCC
Q 043502 731 QYNK--VTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWD-GWNWVEHGTPGKGVTLVGSP 807 (949)
Q Consensus 731 EwNg--~TW~WhdHGkP~~t~ls~~pGtAM~psk~sl~gslFm~~snG~LyEr~Wntg~-gW~WVdHGtP~~gvtvv~sp 807 (949)
-++. +...|-....+... .+ .-++ ..+.+|+.+.||.||----++|. -|++--|+.|. ..
T Consensus 293 ~~d~~tG~~~W~~~~~~~~~-~s---sp~i------~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~-------~~ 355 (377)
T TIGR03300 293 ALDRRSGSELWKNDELKYRQ-LT---APAV------VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGI-------AS 355 (377)
T ss_pred EEECCCCcEEEccccccCCc-cc---cCEE------ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc-------cc
Confidence 9554 45678642211111 00 1122 23579999999999874333333 46555566553 33
Q ss_pred CCcccCceEEEEecCCceEE
Q 043502 808 GPCLHGNQLLLIGSDGKVYL 827 (949)
Q Consensus 808 G~sf~gsqLFviGSDG~LYe 827 (949)
.|++.+++||+.+.||+||-
T Consensus 356 sp~~~~~~l~v~~~dG~l~~ 375 (377)
T TIGR03300 356 PPVVVGDGLLVQTRDGDLYA 375 (377)
T ss_pred CCEEECCEEEEEeCCceEEE
Confidence 45778899999999999983
No 2
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.28 E-value=0.00041 Score=72.15 Aligned_cols=231 Identities=16% Similarity=0.237 Sum_probs=142.6
Q ss_pred EecCceEEEEeeCCeeEEEEecCCEEEEEecCCCCCccccccccccceEEEeccCcEEEEEecCCCceeeeccCCCCCce
Q 043502 572 MHGSRSFFLITDGGFTFEYLYAESVWLWLRHDHSTPMRGVLGNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQ 651 (949)
Q Consensus 572 mh~~~s~fliTd~G~~fE~~~~~~~WlWl~H~h~T~m~g~~g~~ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G~~ 651 (949)
.-.++.+|+.+.+|.+|..=-..+.=+| ++..+.+..+++...++.||+.+.+|.|.-=.-..-.+.|..-.. ..
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W-~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~----~~ 136 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLW-RVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLS----SE 136 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEee-eecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccC----ce
Confidence 3446789999999999887545555566 344445566677778889999999998887776555667864421 11
Q ss_pred eecCCCCCCCCCcceeecccCcEEEEecCCeEeEEEEeceeeeeecCCCCCCcceEEeecccccccCeEEEEccCceEee
Q 043502 652 VIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQ 731 (949)
Q Consensus 652 V~~G~pwdgipG~~~~vt~~dklF~vt~~GrLlq~tva~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~NGrLYE 731 (949)
+.+ .-+..++.+|+.+.+|+|+-+-....+..|.....++...+.....+... ++.+|+...+|+||-
T Consensus 137 ~~~-----------~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~~~~~~g~v~a 204 (377)
T TIGR03300 137 VLS-----------PPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DGGVLVGFAGGKLVA 204 (377)
T ss_pred eec-----------CCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCEEEEECCCCEEEE
Confidence 211 11235789999999999999988888888876544332222211122233 457888888999999
Q ss_pred ec--Cceeeeeec-CCCCce-eeecCCCceecCCCCCCcceEEEEecCCCeEEEEEeCCC-CeEEeecCCCCCCceeecC
Q 043502 732 YN--KVTELWHEH-YQSQHL-VLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWD-GWNWVEHGTPGKGVTLVGS 806 (949)
Q Consensus 732 wN--g~TW~WhdH-GkP~~t-~ls~~pGtAM~psk~sl~gslFm~~snG~LyEr~Wntg~-gW~WVdHGtP~~gvtvv~s 806 (949)
++ .+...|..- +.|.+. .+.+. ..+..+..-..+.+|+.+.+|.||-.--.+|. -|+-- .+ ..
T Consensus 205 ld~~tG~~~W~~~~~~~~g~~~~~~~--~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-~~---------~~ 272 (377)
T TIGR03300 205 LDLQTGQPLWEQRVALPKGRTELERL--VDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD-AS---------SY 272 (377)
T ss_pred EEccCCCEeeeeccccCCCCCchhhh--hccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec-cC---------Cc
Confidence 54 455678532 222211 00000 00111111124579999999999875444332 24332 11 12
Q ss_pred CCCcccCceEEEEecCCceEEEEEe
Q 043502 807 PGPCLHGNQLLLIGSDGKVYLRYMD 831 (949)
Q Consensus 807 pG~sf~gsqLFviGSDG~LYeRywd 831 (949)
..|++.+++||+...||.+|--=.+
T Consensus 273 ~~p~~~~~~vyv~~~~G~l~~~d~~ 297 (377)
T TIGR03300 273 QGPAVDDNRLYVTDADGVVVALDRR 297 (377)
T ss_pred cCceEeCCEEEEECCCCeEEEEECC
Confidence 3456778999999999999876544
No 3
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.27 E-value=0.00032 Score=74.21 Aligned_cols=232 Identities=16% Similarity=0.238 Sum_probs=146.1
Q ss_pred EecCceEEEEeeCCeeEEEEecCCEEEEEecCC----------CCCccccccccccceEEEeccCcEEEEEecCCCceee
Q 043502 572 MHGSRSFFLITDGGFTFEYLYAESVWLWLRHDH----------STPMRGVLGNYNGSLYMVDLYGSLLIRERSSNELAWI 641 (949)
Q Consensus 572 mh~~~s~fliTd~G~~fE~~~~~~~WlWl~H~h----------~T~m~g~~g~~ngsLf~vd~~GsL~~R~~~g~~~~W~ 641 (949)
...+.++|+.+++|.++=+=-..|.=+|-.--. +..+.+.+...++.||+.+.+|.|+-=....-...|.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 345689999999998876655556667743211 1233455666899999999999998877766677886
Q ss_pred eccCCCCCceeecCCCCCCCCCcceeecccCcEEEEecCCeEeEEEEeceeeeeecCCCCCCcceEEeecccccccCeEE
Q 043502 642 NCTAMRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVF 721 (949)
Q Consensus 642 n~t~mr~G~~V~~G~pwdgipG~~~~vt~~dklF~vt~~GrLlq~tva~rkwkW~dhg~PPgTkIata~d~~~~r~~~iF 721 (949)
.-.. | .+.+. -+..++.+|+.+.+|+|+-+-....+..|+.-...|...+.....|.+. ++.+|
T Consensus 146 ~~~~---~-~~~ss-----------P~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~ 209 (394)
T PRK11138 146 TKVA---G-EALSR-----------PVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAI 209 (394)
T ss_pred ccCC---C-ceecC-----------CEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCEEE
Confidence 5422 1 12111 1336889999999999999999999999987654333222222234444 45899
Q ss_pred EEccCceEee--ecCceeeeee-cCCCCcee-eecCCCceecCCCCCCcceEEEEecCCCeEEEEEeCCCCeEEee-cCC
Q 043502 722 VVGRNGRLYQ--YNKVTELWHE-HYQSQHLV-LSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWDGWNWVE-HGT 796 (949)
Q Consensus 722 vvG~NGrLYE--wNg~TW~Whd-HGkP~~t~-ls~~pGtAM~psk~sl~gslFm~~snG~LyEr~Wntg~gW~WVd-HGt 796 (949)
+.+.+|+||- -..+...|.. .+.|.+.. +.+.. .+..+..-..+.+|+.+.+|.||=.--.+|.- .|.. -|.
T Consensus 210 ~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~--~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~-~W~~~~~~ 286 (394)
T PRK11138 210 VGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLV--DVDTTPVVVGGVVYALAYNGNLVALDLRSGQI-VWKREYGS 286 (394)
T ss_pred EEcCCCEEEEEEccCChhhheeccccCCCccchhccc--ccCCCcEEECCEEEEEEcCCeEEEEECCCCCE-EEeecCCC
Confidence 9999999987 3445667864 34554321 10000 00011112356799999999998654443321 2321 121
Q ss_pred CCCCceeecCCCCcccCceEEEEecCCceEEEEEe
Q 043502 797 PGKGVTLVGSPGPCLHGNQLLLIGSDGKVYLRYMD 831 (949)
Q Consensus 797 P~~gvtvv~spG~sf~gsqLFviGSDG~LYeRywd 831 (949)
+ ..+...+++||+...||++|--=.+
T Consensus 287 ~---------~~~~~~~~~vy~~~~~g~l~ald~~ 312 (394)
T PRK11138 287 V---------NDFAVDGGRIYLVDQNDRVYALDTR 312 (394)
T ss_pred c---------cCcEEECCEEEEEcCCCeEEEEECC
Confidence 1 2345678999999999999865444
No 4
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.21 E-value=0.00023 Score=75.25 Aligned_cols=224 Identities=16% Similarity=0.218 Sum_probs=137.5
Q ss_pred CceEEEEeeCCeeEEEEecCCEEEEEecCC-CC-C--ccccccccccceEEEeccCcEEEEEecCCCceeeeccCCCCCc
Q 043502 575 SRSFFLITDGGFTFEYLYAESVWLWLRHDH-ST-P--MRGVLGNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGR 650 (949)
Q Consensus 575 ~~s~fliTd~G~~fE~~~~~~~WlWl~H~h-~T-~--m~g~~g~~ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G~ 650 (949)
+..+|+.|.+|.++-.==..+.=+|-.... |. . -..++...++.+|+...+|.|.--....-...|..-...++|.
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~ 239 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA 239 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCc
Confidence 356888888887776665667777754322 21 0 1244555788999999999998776666677887654444432
Q ss_pred eeecCCCCCCCCCcceeecccCcEEEEecCCeEeEEEEeceeeeeecCCCCCCcceEEeecccccccCeEEEEccCceEe
Q 043502 651 QVIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLY 730 (949)
Q Consensus 651 ~V~~G~pwdgipG~~~~vt~~dklF~vt~~GrLlq~tva~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~NGrLY 730 (949)
.-+.. ...+. ..-|..++.+|+++.+|.|+-.-....+-.|+.. -+. ..++ ...+++||+++.+|+||
T Consensus 240 ~~~~~--~~~~~--~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~---~~~----~~~~-~~~~~~vy~~~~~g~l~ 307 (394)
T PRK11138 240 TEIDR--LVDVD--TTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE---YGS----VNDF-AVDGGRIYLVDQNDRVY 307 (394)
T ss_pred cchhc--ccccC--CCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec---CCC----ccCc-EEECCEEEEEcCCCeEE
Confidence 11000 00000 1113368899999999999988888888888752 111 1122 34578999999999999
Q ss_pred eec--CceeeeeecCCCCceeeecCCCceecCCCCCCcceEEEEecCCCeEEEEEeCCC-CeEEeecCCCCCCceeecCC
Q 043502 731 QYN--KVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWD-GWNWVEHGTPGKGVTLVGSP 807 (949)
Q Consensus 731 EwN--g~TW~WhdHGkP~~t~ls~~pGtAM~psk~sl~gslFm~~snG~LyEr~Wntg~-gW~WVdHGtP~~gvtvv~sp 807 (949)
-.+ .+...|...-... ... +.-++ ..+.+|+.+.||.||---=++|. -|+.--++.+. .+
T Consensus 308 ald~~tG~~~W~~~~~~~-~~~---~sp~v------~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~-------~s 370 (394)
T PRK11138 308 ALDTRGGVELWSQSDLLH-RLL---TAPVL------YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGF-------LS 370 (394)
T ss_pred EEECCCCcEEEcccccCC-Ccc---cCCEE------ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc-------ee
Confidence 943 4567896542111 110 11122 24679999999999863223332 23332122221 23
Q ss_pred CCcccCceEEEEecCCceEE
Q 043502 808 GPCLHGNQLLLIGSDGKVYL 827 (949)
Q Consensus 808 G~sf~gsqLFviGSDG~LYe 827 (949)
.|.+.+++|||.+.||+||.
T Consensus 371 ~P~~~~~~l~v~t~~G~l~~ 390 (394)
T PRK11138 371 EPVVADDKLLIQARDGTVYA 390 (394)
T ss_pred CCEEECCEEEEEeCCceEEE
Confidence 45677899999999999995
No 5
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.72 E-value=0.0065 Score=58.01 Aligned_cols=182 Identities=19% Similarity=0.325 Sum_probs=113.4
Q ss_pred cccceEEEeccCcEEEEEecCCCceeeeccCCCCCceeecCCCCCCCCCcceeecccCcEEEEecCCeEeEEEEeceeee
Q 043502 615 YNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFK 694 (949)
Q Consensus 615 ~ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G~~V~~G~pwdgipG~~~~vt~~dklF~vt~~GrLlq~tva~rkwk 694 (949)
.++.||+.+.+|.|..-.-..-.+.|.--.. +. ...+ .+..++.+|+++.+|+|+-+-....+..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~---~~-----------~~~~-~~~~~~~v~v~~~~~~l~~~d~~tG~~~ 99 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLP---GP-----------ISGA-PVVDGGRVYVGTSDGSLYALDAKTGKVL 99 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECS---SC-----------GGSG-EEEETTEEEEEETTSEEEEEETTTSCEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecc---cc-----------ccce-eeecccccccccceeeeEecccCCccee
Confidence 6777888888888877776444566654421 10 1111 2568899999999999998888899999
Q ss_pred ee-cCCCCCCcceEEeecccccccCeEEEEccCceEeeec--CceeeeeecCCCCce-----eeecCCCceecCCCCCCc
Q 043502 695 WK-DCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQYN--KVTELWHEHYQSQHL-----VLSILPGTAMRPPSASLT 766 (949)
Q Consensus 695 W~-dhg~PPgTkIata~d~~~~r~~~iFvvG~NGrLYEwN--g~TW~WhdHGkP~~t-----~ls~~pGtAM~psk~sl~ 766 (949)
|. .-...|...+...+...+. ++.+++...+|+||.++ .+...|....+.+.. .+....+..... .
T Consensus 100 W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 173 (238)
T PF13360_consen 100 WSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-----D 173 (238)
T ss_dssp EEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-----T
T ss_pred eeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-----C
Confidence 99 4544344444333333333 67888888899999977 567889988844331 111111222222 3
Q ss_pred ceEEEEecCCCeEEEEEeCCCC-eEEeecCCCCCCceeecCCC-CcccCceEEEEecCCceEE
Q 043502 767 GSLFMLSEDGGLVEYHWNTWDG-WNWVEHGTPGKGVTLVGSPG-PCLHGNQLLLIGSDGKVYL 827 (949)
Q Consensus 767 gslFm~~snG~LyEr~Wntg~g-W~WVdHGtP~~gvtvv~spG-~sf~gsqLFviGSDG~LYe 827 (949)
+.+|+.+.+|.++.. +..+| =.|... +. + ..+ +...+..||+...||++|-
T Consensus 174 ~~v~~~~~~g~~~~~--d~~tg~~~w~~~--~~-~-----~~~~~~~~~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 174 GRVYVSSGDGRVVAV--DLATGEKLWSKP--IS-G-----IYSLPSVDGGTLYVTSSDGRLYA 226 (238)
T ss_dssp TEEEEECCTSSEEEE--ETTTTEEEEEEC--SS-------ECECEECCCTEEEEEETTTEEEE
T ss_pred CEEEEEcCCCeEEEE--ECCCCCEEEEec--CC-C-----ccCCceeeCCEEEEEeCCCEEEE
Confidence 489999999998776 43333 234322 21 1 111 2345789999998999874
No 6
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.53 E-value=0.0048 Score=66.23 Aligned_cols=207 Identities=18% Similarity=0.250 Sum_probs=104.3
Q ss_pred cccceEEEeccCcEEEEEecCCCceeeeccCCCCCce---eecCCCCCCCCCcceeecccCcEEEEecCCeEeEEEEece
Q 043502 615 YNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQ---VIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALR 691 (949)
Q Consensus 615 ~ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G~~---V~~G~pwdgipG~~~~vt~~dklF~vt~~GrLlq~tva~r 691 (949)
.+...|++...|.|+-=.-.|..|.=++-...-||.- +..+ ++.+.-++...++|.+++-|+=|+..+...
T Consensus 70 ~~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~------~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~ 143 (302)
T PF14870_consen 70 DGNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALG------DGSAELAGDRGAIYRTTDGGKTWQAVVSET 143 (302)
T ss_dssp ETTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEEE------TTEEEEEETT--EEEESSTTSSEEEEE-S-
T ss_pred cCCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcC------CCcEEEEcCCCcEEEeCCCCCCeeEcccCC
Confidence 4567888888886665555566655555433234432 1122 333334555566666666666555544322
Q ss_pred eeeeecCCCCCCcceEEeecccccccCeEEEEccCceEee-ecCceeeeeecCCCCceeeecCCCceecCCCCCCcceEE
Q 043502 692 KFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQ-YNKVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLF 770 (949)
Q Consensus 692 kwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~NGrLYE-wNg~TW~WhdHGkP~~t~ls~~pGtAM~psk~sl~gslF 770 (949)
. .++.+.....++++.+++..|++|. |+.+.-.|+.|-.+....|+. -...| .+.++
T Consensus 144 ~--------------gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~---~gf~~-----~~~lw 201 (302)
T PF14870_consen 144 S--------------GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQS---MGFSP-----DGNLW 201 (302)
T ss_dssp -----------------EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEE---EEE-T-----TS-EE
T ss_pred c--------------ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehh---ceecC-----CCCEE
Confidence 2 4444555678889999999999998 999999999999998877772 22233 26899
Q ss_pred EEecCCCeEEEEEeCCCCeEEeecCCCCCCceeecCCCCccc-CceEEEEecCCceEEEEEeCCcceeeecCCCCCCCcC
Q 043502 771 MLSEDGGLVEYHWNTWDGWNWVEHGTPGKGVTLVGSPGPCLH-GNQLLLIGSDGKVYLRYMDQMTWRWKNCGFPHKAKEN 849 (949)
Q Consensus 771 m~~snG~LyEr~Wntg~gW~WVdHGtP~~gvtvv~spG~sf~-gsqLFviGSDG~LYeRywdg~tWtW~NhG~P~~Gk~~ 849 (949)
|++..|.|+- -=+..+.=.|-++=.|.+ +.-.+.-..+|. .+.+|+.|.+|.||.--=.|.+|.=..-+.+.++++.
T Consensus 202 ~~~~Gg~~~~-s~~~~~~~~w~~~~~~~~-~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~ 279 (302)
T PF14870_consen 202 MLARGGQIQF-SDDPDDGETWSEPIIPIK-TNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLY 279 (302)
T ss_dssp EEETTTEEEE-EE-TTEEEEE---B-TTS-S--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---
T ss_pred EEeCCcEEEE-ccCCCCccccccccCCcc-cCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceE
Confidence 9996666654 222233334766555541 111111111233 4799999999999976555667776555666666554
Q ss_pred cc
Q 043502 850 SE 851 (949)
Q Consensus 850 ~~ 851 (949)
+=
T Consensus 280 ~i 281 (302)
T PF14870_consen 280 RI 281 (302)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 7
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.24 E-value=0.072 Score=51.00 Aligned_cols=191 Identities=19% Similarity=0.301 Sum_probs=119.9
Q ss_pred ceEEEEecCceEEEEeeCCeeEEEEecCCEEEEEecCCCCCccccccccccceEEEeccCcEEEEEecCCCceee-eccC
Q 043502 567 FRLRVMHGSRSFFLITDGGFTFEYLYAESVWLWLRHDHSTPMRGVLGNYNGSLYMVDLYGSLLIRERSSNELAWI-NCTA 645 (949)
Q Consensus 567 f~~rvmh~~~s~fliTd~G~~fE~~~~~~~WlWl~H~h~T~m~g~~g~~ngsLf~vd~~GsL~~R~~~g~~~~W~-n~t~ 645 (949)
+.......++.+|+.+.+|.+|-+==..+.=+|-.-- +.+..+++-..++.||++..+|+|..-.-..-...|. .-..
T Consensus 28 ~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~ 106 (238)
T PF13360_consen 28 PVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTS 106 (238)
T ss_dssp EEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-S
T ss_pred ccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeecccccccccceeeeEecccCCcceeeeecccc
Confidence 3334566778899999999998776667788887665 7777777767899999999888766665445556776 3322
Q ss_pred CCCCceeecCCCCCCCCCcceeecccCcEEEEecCCeEeEEEEeceeeeeecCCC-CCC-cceE---EeecccccccCeE
Q 043502 646 MRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFKWKDCRH-PLD-TKVA---CIVDQELFRENIV 720 (949)
Q Consensus 646 mr~G~~V~~G~pwdgipG~~~~vt~~dklF~vt~~GrLlq~tva~rkwkW~dhg~-PPg-TkIa---ta~d~~~~r~~~i 720 (949)
.++-......+..+. ++.+++.+.+|.|+.+-...++..|+.... |++ +.+. .+....++.++.+
T Consensus 107 ---------~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 176 (238)
T PF13360_consen 107 ---------SPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRV 176 (238)
T ss_dssp ---------SCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEE
T ss_pred ---------ccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEE
Confidence 111112223333333 677888888999998888888888887553 332 2221 1222335556699
Q ss_pred EEEccCceEeee--cCceeeeeecCCCCceeeecCCCceecCCCCCCcceEEEEecCCCeEE
Q 043502 721 FVVGRNGRLYQY--NKVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDGGLVE 780 (949)
Q Consensus 721 FvvG~NGrLYEw--Ng~TW~WhdHGkP~~t~ls~~pGtAM~psk~sl~gslFm~~snG~LyE 780 (949)
|+.+.+|+++.. ..+..+|-.. +.+.. +.+ ..-...+|+.+.+|+||-
T Consensus 177 ~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~------~~~----~~~~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 177 YVSSGDGRVVAVDLATGEKLWSKP--ISGIY------SLP----SVDGGTLYVTSSDGRLYA 226 (238)
T ss_dssp EEECCTSSEEEEETTTTEEEEEEC--SS-EC------ECE----ECCCTEEEEEETTTEEEE
T ss_pred EEEcCCCeEEEEECCCCCEEEEec--CCCcc------CCc----eeeCCEEEEEeCCCEEEE
Confidence 999999998883 2333348433 22210 111 123467898888888875
No 8
>PRK13684 Ycf48-like protein; Provisional
Probab=97.07 E-value=0.066 Score=57.17 Aligned_cols=228 Identities=16% Similarity=0.220 Sum_probs=113.6
Q ss_pred CceEEEEeeCCeeEEEEecCCEEEEEecCCCCCccccccccccceEEEeccCcEEEEEecCCCceeeeccCCCCCceeec
Q 043502 575 SRSFFLITDGGFTFEYLYAESVWLWLRHDHSTPMRGVLGNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIG 654 (949)
Q Consensus 575 ~~s~fliTd~G~~fE~~~~~~~WlWl~H~h~T~m~g~~g~~ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G~~V~~ 654 (949)
...++..+|.|.+|+.....-. +..-++....- -.+..|++..+|.|+.-+=.|..|.=+.-..--+|.
T Consensus 65 ~G~il~T~DgG~tW~~~~~~~~------~~~~~l~~v~~-~~~~~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~---- 133 (334)
T PRK13684 65 NRTLLETNDGGETWEERSLDLP------EENFRLISISF-KGDEGWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGS---- 133 (334)
T ss_pred CCEEEEEcCCCCCceECccCCc------ccccceeeeEE-cCCcEEEeCCCceEEEECCCCCCCeEccCCcCCCCC----
Confidence 3456666677777776543210 00011111111 123468888888777655455544422211001111
Q ss_pred CCCCCCCCCcceeecccCcEEEEecCCeEeEEEEeceeeeeecCCCCCCcceEEeecccccccCeEEEEccCceEee-ec
Q 043502 655 GPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQ-YN 733 (949)
Q Consensus 655 G~pwdgipG~~~~vt~~dklF~vt~~GrLlq~tva~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~NGrLYE-wN 733 (949)
|. . .....++.+++++..|.+|.-.= ..-+|...-.|....+..+ +...++.++++|.+|.+|. +.
T Consensus 134 --~~-----~-i~~~~~~~~~~~g~~G~i~~S~D--gG~tW~~~~~~~~g~~~~i---~~~~~g~~v~~g~~G~i~~s~~ 200 (334)
T PRK13684 134 --PY-----L-ITALGPGTAEMATNVGAIYRTTD--GGKNWEALVEDAAGVVRNL---RRSPDGKYVAVSSRGNFYSTWE 200 (334)
T ss_pred --ce-----E-EEEECCCcceeeeccceEEEECC--CCCCceeCcCCCcceEEEE---EECCCCeEEEEeCCceEEEEcC
Confidence 11 0 11122334555666665544322 2234555445544444332 2334678999999999998 44
Q ss_pred CceeeeeecCCCCceeeecCCCceecCCCCCCcceEEEEecCCCeEEEEEeCCCCeEEeecCCCCCCceeecCCCCccc-
Q 043502 734 KVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWDGWNWVEHGTPGKGVTLVGSPGPCLH- 812 (949)
Q Consensus 734 g~TW~WhdHGkP~~t~ls~~pGtAM~psk~sl~gslFm~~snG~LyEr~Wntg~gW~WVdHGtP~~gvtvv~spG~sf~- 812 (949)
....+|..+-.+....+. +-+..+ .+++++++.+|.++=. ++.+|=+|..+..|..... .....-.+.
T Consensus 201 ~gg~tW~~~~~~~~~~l~---~i~~~~-----~g~~~~vg~~G~~~~~--s~d~G~sW~~~~~~~~~~~-~~l~~v~~~~ 269 (334)
T PRK13684 201 PGQTAWTPHQRNSSRRLQ---SMGFQP-----DGNLWMLARGGQIRFN--DPDDLESWSKPIIPEITNG-YGYLDLAYRT 269 (334)
T ss_pred CCCCeEEEeeCCCcccce---eeeEcC-----CCCEEEEecCCEEEEc--cCCCCCccccccCCccccc-cceeeEEEcC
Confidence 445667776555443333 122222 3578899988876422 2344444556666621100 000111112
Q ss_pred CceEEEEecCCceEEEEEeCCccee
Q 043502 813 GNQLLLIGSDGKVYLRYMDQMTWRW 837 (949)
Q Consensus 813 gsqLFviGSDG~LYeRywdg~tWtW 837 (949)
.++++++|.+|.+|.-.=.+.+|.=
T Consensus 270 ~~~~~~~G~~G~v~~S~d~G~tW~~ 294 (334)
T PRK13684 270 PGEIWAGGGNGTLLVSKDGGKTWEK 294 (334)
T ss_pred CCCEEEEcCCCeEEEeCCCCCCCeE
Confidence 4689999999999965422446654
No 9
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.01 E-value=0.078 Score=57.22 Aligned_cols=229 Identities=15% Similarity=0.266 Sum_probs=123.1
Q ss_pred ceeEEEecccCchheeeccceeEEEccCCCccccCCeEE-EEEEeceeeehhccCceEEEecCCCCcceEEEeecccccc
Q 043502 138 ETSIWVTGVSGSVYERFWNGVQWVIAPHDLPISAGPAIS-VFIVNQRILALAEAGVLYQMQLGDNSQPIWVEFIPAIDQS 216 (949)
Q Consensus 138 etsiwvtgesgsiyerfwng~~wviaphdlp~s~g~ai~-vfivn~tilalseag~lyqmql~e~sqpiw~ef~~~~~~~ 216 (949)
..-.||.||.|-||.-==.|..|--.|.+-|+. |.... +++-++.++...+.|.+|.=.=+- --|........
T Consensus 71 ~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lp-gs~~~i~~l~~~~~~l~~~~G~iy~T~DgG---~tW~~~~~~~~-- 144 (302)
T PF14870_consen 71 GNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLP-GSPFGITALGDGSAELAGDRGAIYRTTDGG---KTWQAVVSETS-- 144 (302)
T ss_dssp TTEEEEEEETTEEEEESSTTSS-EE----TT-S-S-EEEEEEEETTEEEEEETT--EEEESSTT---SSEEEEE-S----
T ss_pred CCceEEEcCCceEEEecCCCCCcEEeecCCCCC-CCeeEEEEcCCCcEEEEcCCCcEEEeCCCC---CCeeEcccCCc--
Confidence 556999999999998888999998877542222 33232 344556677778889988753222 23654322111
Q ss_pred ccccccccceeEeecceeecCCcEEEEEecCCceeEeeccCCCccccCCCCCCCceeEEeeccccCCceEEEEccCCcee
Q 043502 217 INGEAEQRSVIQIKSGVVSQDGERVYFCTKNGLLLELSEVEPPRWLNHGRPPGANVAAIADAGNVRPEVVYTISSTGDLY 296 (949)
Q Consensus 217 ~~~~~~qs~~~~ik~gvvs~dg~~lff~~knG~LLe~tel~p~rW~~hg~PPga~VA~I~D~~~~R~~vVftiss~GdLY 296 (949)
--|.++..+.||+ +..|+.+|.++.-.+--.--|.-|.|+---.|-+|.=.+. +-++.+.+-|.|+
T Consensus 145 ----------gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~---~~lw~~~~Gg~~~ 210 (302)
T PF14870_consen 145 ----------GSINDITRSSDGR-YVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPD---GNLWMLARGGQIQ 210 (302)
T ss_dssp ------------EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TT---S-EEEEETTTEEE
T ss_pred ----------ceeEeEEECCCCc-EEEEECcccEEEEecCCCccceEEccCccceehhceecCC---CCEEEEeCCcEEE
Confidence 3366778899997 6667899999877665556699999998888887765544 5666677888887
Q ss_pred eec--cCCchhhhhhccccccccccccccCcccccccccCCceeeEEEEecCCcEEEEEeeccceeEEEcCCCCCCcccc
Q 043502 297 EYD--RISKPSWRKHIWSKGTAANASLIPSMACTLHGLIGDHSTSLFLLTKGGNLVERRIQQRKWKWIIHGSPEDTHLTS 374 (949)
Q Consensus 297 eYn--r~tkpsW~kHiws~~l~~~~sl~~s~g~t~~gl~g~~S~SLFlltk~G~LVErr~~qrkWkWi~HGtP~~~~l~s 374 (949)
.=+ -..+ .|.|++- +..+-+..+..+.=....-+|...-.|.|.=-.=....|+=..=+.+-...|..
T Consensus 211 ~s~~~~~~~-~w~~~~~---------~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~ 280 (302)
T PF14870_consen 211 FSDDPDDGE-TWSEPII---------PIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYR 280 (302)
T ss_dssp EEE-TTEEE-EE---B----------TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---E
T ss_pred EccCCCCcc-ccccccC---------CcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEE
Confidence 665 3444 7888653 333334434433333334566666555554211113567766666666556665
Q ss_pred cceeccCCccccceEEEEEcccceEEEEe
Q 043502 375 ITPVQQDESNEKFFSLFLTTSAGAVFEYQ 403 (949)
Q Consensus 375 iT~v~~d~~~~~~~sLF~t~S~G~Vyey~ 403 (949)
|.-+.. .+.|+++.+|.+-+|.
T Consensus 281 i~f~~~-------~~gf~lG~~G~ll~~~ 302 (302)
T PF14870_consen 281 IVFVNP-------DKGFVLGQDGVLLRYV 302 (302)
T ss_dssp EEEEET-------TEEEEE-STTEEEEE-
T ss_pred EEEcCC-------CceEEECCCcEEEEeC
Confidence 554422 4689999999988774
No 10
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.91 E-value=0.94 Score=50.73 Aligned_cols=125 Identities=21% Similarity=0.280 Sum_probs=80.8
Q ss_pred EEEeceeeehhccCceEEEecCCCCcceEEEeeccccccccccccccceeEeecceeecCCcEEEEEecCCceeEee-cc
Q 043502 178 FIVNQRILALAEAGVLYQMQLGDNSQPIWVEFIPAIDQSINGEAEQRSVIQIKSGVVSQDGERVYFCTKNGLLLELS-EV 256 (949)
Q Consensus 178 fivn~tilalseag~lyqmql~e~sqpiw~ef~~~~~~~~~~~~~qs~~~~ik~gvvs~dg~~lff~~knG~LLe~t-el 256 (949)
-|++.+|..-+..|.||-+.+ ++-+.+|.-=+... ...+..-.+..|++-.|+.+||+.+.+|.|.-|. +-
T Consensus 58 vv~~g~vy~~~~~g~l~AlD~-~tG~~~W~~~~~~~-------~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~T 129 (488)
T cd00216 58 LVVDGDMYFTTSHSALFALDA-ATGKVLWRYDPKLP-------ADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAET 129 (488)
T ss_pred EEECCEEEEeCCCCcEEEEEC-CCChhhceeCCCCC-------ccccccccccCCcEEccCCeEEEecCCCeEEEEECCC
Confidence 366888888888899999986 45688897422111 1112222345566655657999999999999998 57
Q ss_pred CCCccccCCCCCCCceeEEeeccccCCceEEEEcc---------CCceeeeccCC-chhhhhhc
Q 043502 257 EPPRWLNHGRPPGANVAAIADAGNVRPEVVYTISS---------TGDLYEYDRIS-KPSWRKHI 310 (949)
Q Consensus 257 ~p~rW~~hg~PPga~VA~I~D~~~~R~~vVftiss---------~GdLYeYnr~t-kpsW~kHi 310 (949)
-+.+|+..-.++.-.-..|.-.-.+-.++||+.++ +|.||-+|..| |..|+...
T Consensus 130 G~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 130 GKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 89999987665520000112222222377887654 57899999986 55666544
No 11
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.71 E-value=0.28 Score=54.74 Aligned_cols=202 Identities=15% Similarity=0.210 Sum_probs=117.1
Q ss_pred ccceEEEeccCcEEEEEecCCCceeeeccCCCCCceeecCCCCCCCCCcceeecccCcEEEEecCCeEeEEEEeceeeee
Q 043502 616 NGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFKW 695 (949)
Q Consensus 616 ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G~~V~~G~pwdgipG~~~~vt~~dklF~vt~~GrLlq~tva~rkwkW 695 (949)
++.+|+|...|.|+...-.|..|.=+......|+.. ....+..++..++++..|.+|--. -...+|
T Consensus 146 ~~~g~~vG~~G~il~T~DgG~tW~~~~~~~~~p~~~------------~~i~~~~~~~~~ivg~~G~v~~S~--D~G~tW 211 (398)
T PLN00033 146 GKEGWIIGKPAILLHTSDGGETWERIPLSPKLPGEP------------VLIKATGPKSAEMVTDEGAIYVTS--NAGRNW 211 (398)
T ss_pred CCEEEEEcCceEEEEEcCCCCCceECccccCCCCCc------------eEEEEECCCceEEEeccceEEEEC--CCCCCc
Confidence 467999999998888777777765444432223221 222233344455666666655432 223344
Q ss_pred ecCCCC-----CCcceE-----------EeecccccccCeEEEEccCceEee-ecCceeeeeecCCCCceeeecCCCcee
Q 043502 696 KDCRHP-----LDTKVA-----------CIVDQELFRENIVFVVGRNGRLYQ-YNKVTELWHEHYQSQHLVLSILPGTAM 758 (949)
Q Consensus 696 ~dhg~P-----PgTkIa-----------ta~d~~~~r~~~iFvvG~NGrLYE-wNg~TW~WhdHGkP~~t~ls~~pGtAM 758 (949)
...-.| .+..+. +...-....++.+.++|..|++|. +..+.-.|..|-.|....+. +|
T Consensus 212 ~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~-----~v 286 (398)
T PLN00033 212 KAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQ-----NM 286 (398)
T ss_pred eEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCcccee-----ee
Confidence 433111 111111 001112446678999999999998 77777778888877766543 23
Q ss_pred cCCCCCCcceEEEEecCCCeEEEEEeCCCCe---EEeecCCCCCCceeecCCCCcc-cCceEEEEecCCceEEEEEeCCc
Q 043502 759 RPPSASLTGSLFMLSEDGGLVEYHWNTWDGW---NWVEHGTPGKGVTLVGSPGPCL-HGNQLLLIGSDGKVYLRYMDQMT 834 (949)
Q Consensus 759 ~psk~sl~gslFm~~snG~LyEr~Wntg~gW---~WVdHGtP~~gvtvv~spG~sf-~gsqLFviGSDG~LYeRywdg~t 834 (949)
.. .-.++++|++.+|+++--. +.+..| .|.+-..+..+..+.+ ..| .+..++++|.+|-+|.--=.+.+
T Consensus 287 ~~---~~dg~l~l~g~~G~l~~S~-d~G~~~~~~~f~~~~~~~~~~~l~~---v~~~~d~~~~a~G~~G~v~~s~D~G~t 359 (398)
T PLN00033 287 GW---RADGGLWLLTRGGGLYVSK-GTGLTEEDFDFEEADIKSRGFGILD---VGYRSKKEAWAAGGSGILLRSTDGGKS 359 (398)
T ss_pred eE---cCCCCEEEEeCCceEEEec-CCCCcccccceeecccCCCCcceEE---EEEcCCCcEEEEECCCcEEEeCCCCcc
Confidence 22 1247899999999998632 334567 5776555432211111 112 25789999999988876544668
Q ss_pred ceeeecCCC
Q 043502 835 WRWKNCGFP 843 (949)
Q Consensus 835 WtW~NhG~P 843 (949)
|+=...+.+
T Consensus 360 W~~~~~~~~ 368 (398)
T PLN00033 360 WKRDKGADN 368 (398)
T ss_pred eeEccccCC
Confidence 876544444
No 12
>PF07938 Fungal_lectin: Fungal fucose-specific lectin; InterPro: IPR012475 Lectins are involved in many recognition events at the molecular or cellular level. These fungal lectins, such as Aleuria aurantialectin (AAL, P18891 from SWISSPROT), specifically recognise fucosylated glycans. AAL is a dimeric protein, with each monomer being organised into a six-bladed beta-propeller fold and a small antiparallel two-stranded beta-sheet. The beta-propeller fold is important in fucose recognition; five binding pockets are found between the propeller blades. The small beta-sheet, on the other hand, is involved in the dimerisation process []. ; PDB: 1IUC_A 1OFZ_A 1IUB_A 2BS5_A 3ZWE_B 3ZW1_B 3ZZV_A 3ZW2_A 3ZW0_A 2BS6_C ....
Probab=96.69 E-value=0.067 Score=58.21 Aligned_cols=201 Identities=17% Similarity=0.259 Sum_probs=101.0
Q ss_pred EEEEeeCCeeEEEEecCCEEE-E-----EecCCC-CCcccccccccc-ceEEEeccCcEEEEEecCCCceeeeccCCCCC
Q 043502 578 FFLITDGGFTFEYLYAESVWL-W-----LRHDHS-TPMRGVLGNYNG-SLYMVDLYGSLLIRERSSNELAWINCTAMRKG 649 (949)
Q Consensus 578 ~fliTd~G~~fE~~~~~~~Wl-W-----l~H~h~-T~m~g~~g~~ng-sLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G 649 (949)
+|.--.+|-+-|..| ++.|. + +.=..+ ||+..+....+. .||-++.+..|+|=...+ +-.|..= +| .+
T Consensus 21 VyyQ~~~g~I~Ea~~-~g~W~~~~~~~v~~~AK~~TPLAA~s~~~~~irvyyl~~~n~l~E~~~d~-~~~W~~G-~L-~~ 96 (311)
T PF07938_consen 21 VYYQDSDGSIREARY-EGSWSNGTSQNVIGKAKLGTPLAAVSKNLNQIRVYYLSNDNILHEICYDS-GGGWYQG-AL-NG 96 (311)
T ss_dssp EEEEBTTSEEEEEEE-TS--EE-SGGGEEEE-STT---EEEETTEEEEEEEEE-TT-BEEEEEEES--S-EEE--CG-GG
T ss_pred EEEEcCCCCEeEeee-cCCccccccccchhhhhcCCCeEEEEcCCCcEEEEEECCCCeEEEEEEcC-CCCcccc-cc-cC
Confidence 345556799999999 88873 1 111223 676666555433 699999999999888877 6888554 34 33
Q ss_pred ceeecCCCCCCCCCcceeeccc----CcEEEEecCC---eEeEEEEeceeeeeecCC--CCCCcceE-Eeeccccccc--
Q 043502 650 RQVIGGPPWDGITGKAMKVTAE----DALFFVSKNG---RLLQFTVALRKFKWKDCR--HPLDTKVA-CIVDQELFRE-- 717 (949)
Q Consensus 650 ~~V~~G~pwdgipG~~~~vt~~----dklF~vt~~G---rLlq~tva~rkwkW~dhg--~PPgTkIa-ta~d~~~~r~-- 717 (949)
.++.-. |-.+| +|++.-.. -.+|.-+++| ++-++.+.+..|+=..-- -.|||.|+ ++..-.-.++
T Consensus 97 ~~~~~A-p~S~l--AA~~~~~~~~~~~rVyyQ~~~~~~~~i~e~~~~~~~W~~g~~l~~a~pGtgiaat~~~~t~~ngp~ 173 (311)
T PF07938_consen 97 LKIQVA-PYSKL--AAVRWNCGNCTHIRVYYQETDGNGNTIQELCWNGDGWTYGANLGSALPGTGIAATAFRYTDTNGPS 173 (311)
T ss_dssp G--B---TT-----EEEEES-CTT-EEEEEE-S--STTEEEEEEEESS-SEEEEEEEEEESTT--EEEEEE-----TTTE
T ss_pred CCcccC-CCCcc--eEEEecCCCCCeEEEEEEcCCCCcceEEEEEccCccceeCCccccCCCCCCcceeEEeecccCCCc
Confidence 344333 22222 22333222 2566777762 455556655455422111 12789884 4440000111
Q ss_pred CeEEEEccCceEee--ecCce-eeeeecCC-----CCceeeecCCCceecCCCCCCcceEEEEecCCCeEEEEEeCCCCe
Q 043502 718 NIVFVVGRNGRLYQ--YNKVT-ELWHEHYQ-----SQHLVLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWDGW 789 (949)
Q Consensus 718 ~~iFvvG~NGrLYE--wNg~T-W~WhdHGk-----P~~t~ls~~pGtAM~psk~sl~gslFm~~snG~LyEr~Wntg~gW 789 (949)
=+||--+.|++|.| |++.. |.| +++. |+++-|+ .+.+.+...+...++|-++.++.+.|-.|+.+.+|
T Consensus 174 iRVYyQ~~d~~I~e~~yd~~~gW~~-~~~~~~~~a~p~t~Ia---Ats~~~~~~~~~irVYy~~~~n~I~e~~W~~~~~~ 249 (311)
T PF07938_consen 174 IRVYYQADDLNIRERCYDSSKGWSW-SIGGVFDSAPPRTPIA---ATSWVPGNNSVQIRVYYLNGDNTIVEACWDGGGGW 249 (311)
T ss_dssp EEEEEEEETTEEEEEEESSSS-EE---EEEEEEEE-ECSEEE---EEEEEET-TEEEEEEEEEETTEEEEEEEESSSCEE
T ss_pred EEEEEECCCCCEEEEEEcCCCceee-eccccccCCCCCCcee---EEEeecCCCceEEEEEEEcCCCcEEEEEEeCCCcE
Confidence 15888999999999 77663 644 4342 2222222 13333333456679999999999999999965544
No 13
>PF07938 Fungal_lectin: Fungal fucose-specific lectin; InterPro: IPR012475 Lectins are involved in many recognition events at the molecular or cellular level. These fungal lectins, such as Aleuria aurantialectin (AAL, P18891 from SWISSPROT), specifically recognise fucosylated glycans. AAL is a dimeric protein, with each monomer being organised into a six-bladed beta-propeller fold and a small antiparallel two-stranded beta-sheet. The beta-propeller fold is important in fucose recognition; five binding pockets are found between the propeller blades. The small beta-sheet, on the other hand, is involved in the dimerisation process []. ; PDB: 1IUC_A 1OFZ_A 1IUB_A 2BS5_A 3ZWE_B 3ZW1_B 3ZZV_A 3ZW2_A 3ZW0_A 2BS6_C ....
Probab=96.68 E-value=0.011 Score=64.15 Aligned_cols=206 Identities=19% Similarity=0.257 Sum_probs=101.9
Q ss_pred cccceEEEeccCcEEEEEecCCCceeeeccCCCCCceeec-CCCCCCCCCcceeecccC--cEEEEecCCeEeEEEEece
Q 043502 615 YNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIG-GPPWDGITGKAMKVTAED--ALFFVSKNGRLLQFTVALR 691 (949)
Q Consensus 615 ~ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G~~V~~-G~pwdgipG~~~~vt~~d--klF~vt~~GrLlq~tva~r 691 (949)
.+-.+|.-|.+|+++|+.+ +-.|.+-+. ..|++ +- -|-|-+|. ....+ .+|+++++.-|=|+....
T Consensus 17 ~~~~VyyQ~~~g~I~Ea~~---~g~W~~~~~----~~v~~~AK--~~TPLAA~-s~~~~~irvyyl~~~n~l~E~~~d~- 85 (311)
T PF07938_consen 17 SHIRVYYQDSDGSIREARY---EGSWSNGTS----QNVIGKAK--LGTPLAAV-SKNLNQIRVYYLSNDNILHEICYDS- 85 (311)
T ss_dssp -EEEEEEEBTTSEEEEEEE---TS--EE-SG----GGEEEE-S--TT---EEE-ETTEEEEEEEEE-TT-BEEEEEEES-
T ss_pred CcEEEEEEcCCCCEeEeee---cCCcccccc----ccchhhhh--cCCCeEEE-EcCCCcEEEEEECCCCeEEEEEEcC-
Confidence 3446899999999999999 556777543 12322 11 12344444 11122 389999999888888866
Q ss_pred eeeeecCCC-------CCCcceEEeecccc-cccCeEEEEccCc--e-Eee--ecCceeeeeecCCCCceeeecCCCc--
Q 043502 692 KFKWKDCRH-------PLDTKVACIVDQEL-FRENIVFVVGRNG--R-LYQ--YNKVTELWHEHYQSQHLVLSILPGT-- 756 (949)
Q Consensus 692 kwkW~dhg~-------PPgTkIata~d~~~-~r~~~iFvvG~NG--r-LYE--wNg~TW~WhdHGkP~~t~ls~~pGt-- 756 (949)
.-.|..--. .|.-+||..--... -..-.||--..+| + +-| |++.+| ..|.+-. ...||+
T Consensus 86 ~~~W~~G~L~~~~~~~Ap~S~lAA~~~~~~~~~~~rVyyQ~~~~~~~~i~e~~~~~~~W---~~g~~l~---~a~pGtgi 159 (311)
T PF07938_consen 86 GGGWYQGALNGLKIQVAPYSKLAAVRWNCGNCTHIRVYYQETDGNGNTIQELCWNGDGW---TYGANLG---SALPGTGI 159 (311)
T ss_dssp -S-EEE-CGGGG--B--TT---EEEEES-CTT-EEEEEE-S--STTEEEEEEEESS-SE---EEEEEEE---EESTT--E
T ss_pred CCCcccccccCCCcccCCCCcceEEEecCCCCCeEEEEEEcCCCCcceEEEEEccCccc---eeCCccc---cCCCCCCc
Confidence 445543222 24444432211110 0112566666663 2 323 554444 3454332 234555
Q ss_pred eecCC----CCCCcceEEEEecCCCeEEEEEeCCCCeEEeecCC------CCCCceeecC-CCCcccCceEEEEecCCce
Q 043502 757 AMRPP----SASLTGSLFMLSEDGGLVEYHWNTWDGWNWVEHGT------PGKGVTLVGS-PGPCLHGNQLLLIGSDGKV 825 (949)
Q Consensus 757 AM~ps----k~sl~gslFm~~snG~LyEr~Wntg~gW~WVdHGt------P~~gvtvv~s-pG~sf~gsqLFviGSDG~L 825 (949)
++... ......++|--+.|++|.|+.|+.+.||.+ +++. |..+.+...- ++..-...+||-...|+.+
T Consensus 160 aat~~~~t~~ngp~iRVYyQ~~d~~I~e~~yd~~~gW~~-~~~~~~~~a~p~t~IaAts~~~~~~~~~irVYy~~~~n~I 238 (311)
T PF07938_consen 160 AATAFRYTDTNGPSIRVYYQADDLNIRERCYDSSKGWSW-SIGGVFDSAPPRTPIAATSWVPGNNSVQIRVYYLNGDNTI 238 (311)
T ss_dssp EEEEE-----TTTEEEEEEEEETTEEEEEEESSSS-EE---EEEEEEEE-ECSEEEEEEEEET-TEEEEEEEEEETTEEE
T ss_pred ceeEEeecccCCCcEEEEEECCCCCEEEEEEcCCCceee-eccccccCCCCCCceeEEEeecCCCceEEEEEEEcCCCcE
Confidence 33332 112335899999999999999997778966 4332 3322221111 0112234699999999999
Q ss_pred EEEEEeCCcceeee
Q 043502 826 YLRYMDQMTWRWKN 839 (949)
Q Consensus 826 YeRywdg~tWtW~N 839 (949)
.|-.|++. ..|.+
T Consensus 239 ~e~~W~~~-~~~~~ 251 (311)
T PF07938_consen 239 VEACWDGG-GGWKD 251 (311)
T ss_dssp EEEEESSS-CEEE-
T ss_pred EEEEEeCC-CcEEC
Confidence 99999974 34543
No 14
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.29 E-value=0.78 Score=48.81 Aligned_cols=161 Identities=13% Similarity=0.213 Sum_probs=105.4
Q ss_pred EecCceEEEEeeCCeeEEEEecCCEEEEEecCCC-CCccccccccccceEEEeccCcEEEEEecCCCceeeeccCCCCCc
Q 043502 572 MHGSRSFFLITDGGFTFEYLYAESVWLWLRHDHS-TPMRGVLGNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGR 650 (949)
Q Consensus 572 mh~~~s~fliTd~G~~fE~~~~~~~WlWl~H~h~-T~m~g~~g~~ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G~ 650 (949)
+.+++++|+.+.+|++|=+-=..+.=.|-+-... ....+..-.-++.+|.+..+|+|.-=.-+--...|..-.....+-
T Consensus 108 ~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~ 187 (370)
T COG1520 108 LGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSL 187 (370)
T ss_pred EEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccc
Confidence 4446779999999955544333677777665544 233344334566667666677777666666666776443322222
Q ss_pred eeecCCCCCCCCCcceeecccCcEEEEec--CCeEeEEEEeceeeeeecCC-CCCCcc----eEEeecccccccCeEEEE
Q 043502 651 QVIGGPPWDGITGKAMKVTAEDALFFVSK--NGRLLQFTVALRKFKWKDCR-HPLDTK----VACIVDQELFRENIVFVV 723 (949)
Q Consensus 651 ~V~~G~pwdgipG~~~~vt~~dklF~vt~--~GrLlq~tva~rkwkW~dhg-~PPgTk----Iata~d~~~~r~~~iFvv 723 (949)
++.+. |. ..++.+|+.+. +++|+.+-.....++|.... .+.+.. ...+..+.++-+..+|..
T Consensus 188 ~~~~~------~~-----~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~ 256 (370)
T COG1520 188 SIYGS------PA-----IASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAG 256 (370)
T ss_pred ccccC------ce-----eecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEE
Confidence 23322 33 48999999999 89999999999999998532 222321 223334447777788999
Q ss_pred ccCceEee--ecCceeeeeecC
Q 043502 724 GRNGRLYQ--YNKVTELWHEHY 743 (949)
Q Consensus 724 G~NGrLYE--wNg~TW~WhdHG 743 (949)
..+|++|. -.-++..|.-+-
T Consensus 257 ~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 257 SYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred ecCCeEEEEEcCCCceEEEEec
Confidence 99999999 445677799887
No 15
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.17 E-value=0.71 Score=51.61 Aligned_cols=192 Identities=14% Similarity=0.190 Sum_probs=110.8
Q ss_pred ccceEEEeccCcEEEEEecCCCceeeeccCCC---C-Cc----eeecCCCCCCCCCcceeecccCcEEEEecCCeEeEEE
Q 043502 616 NGSLYMVDLYGSLLIRERSSNELAWINCTAMR---K-GR----QVIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFT 687 (949)
Q Consensus 616 ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr---~-G~----~V~~G~pwdgipG~~~~vt~~dklF~vt~~GrLlq~t 687 (949)
++..++++..|+++...-.|..|. -..... + .+ .+.+..|.+|- -...-+..|.++++++.+|.+|. +
T Consensus 189 ~~~~~ivg~~G~v~~S~D~G~tW~--~~~~~t~~~~l~~~~~s~~~g~~~y~Gs-f~~v~~~~dG~~~~vg~~G~~~~-s 264 (398)
T PLN00033 189 PKSAEMVTDEGAIYVTSNAGRNWK--AAVEETVSATLNRTVSSGISGASYYTGT-FSTVNRSPDGDYVAVSSRGNFYL-T 264 (398)
T ss_pred CCceEEEeccceEEEECCCCCCce--Ecccccccccccccccccccccceeccc-eeeEEEcCCCCEEEEECCccEEE-e
Confidence 356889999999888765555553 221110 0 00 11222344332 12223457778899999997664 3
Q ss_pred EeceeeeeecCCCCCCcceEEeecccccccCeEEEEccCceEee--ecCcee---eeeecCCCC-ceeeecCCCceecCC
Q 043502 688 VALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQ--YNKVTE---LWHEHYQSQ-HLVLSILPGTAMRPP 761 (949)
Q Consensus 688 va~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~NGrLYE--wNg~TW---~WhdHGkP~-~t~ls~~pGtAM~ps 761 (949)
+...+=.|.-+-.|+...+..+ ....++.++++|.+|.||. ..+.+| .|.+-..+. ...+. +.+..+
T Consensus 265 ~d~G~~~W~~~~~~~~~~l~~v---~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~---~v~~~~- 337 (398)
T PLN00033 265 WEPGQPYWQPHNRASARRIQNM---GWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGIL---DVGYRS- 337 (398)
T ss_pred cCCCCcceEEecCCCccceeee---eEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceE---EEEEcC-
Confidence 3333323777777877766433 1235678999999999998 666666 677655442 21111 112222
Q ss_pred CCCCcceEEEEecCCCeEEEEEeCCCCeEEeecCCCCCCceeecCCCCccc-CceEEEEecCCceEE
Q 043502 762 SASLTGSLFMLSEDGGLVEYHWNTWDGWNWVEHGTPGKGVTLVGSPGPCLH-GNQLLLIGSDGKVYL 827 (949)
Q Consensus 762 k~sl~gslFm~~snG~LyEr~Wntg~gW~WVdHGtP~~gvtvv~spG~sf~-gsqLFviGSDG~LYe 827 (949)
.+.+++++.+|-++.- =+.|..|.=+.=+.+.. ..++ ...|. .++.|+.|.+|-+.+
T Consensus 338 ----d~~~~a~G~~G~v~~s-~D~G~tW~~~~~~~~~~-~~ly---~v~f~~~~~g~~~G~~G~il~ 395 (398)
T PLN00033 338 ----KKEAWAAGGSGILLRS-TDGGKSWKRDKGADNIA-ANLY---SVKFFDDKKGFVLGNDGVLLR 395 (398)
T ss_pred ----CCcEEEEECCCcEEEe-CCCCcceeEccccCCCC-ccee---EEEEcCCCceEEEeCCcEEEE
Confidence 3568999998877763 24466777665333221 1222 11233 489999999998754
No 16
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.08 E-value=0.92 Score=48.26 Aligned_cols=202 Identities=17% Similarity=0.229 Sum_probs=119.7
Q ss_pred EEecCceEEEEeeCCeeEEEEecCCEEEEEecCCC-CCccccccc-cccceEEEeccCcEEEEEecCCCceeeeccCCCC
Q 043502 571 VMHGSRSFFLITDGGFTFEYLYAESVWLWLRHDHS-TPMRGVLGN-YNGSLYMVDLYGSLLIRERSSNELAWINCTAMRK 648 (949)
Q Consensus 571 vmh~~~s~fliTd~G~~fE~~~~~~~WlWl~H~h~-T~m~g~~g~-~ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~ 648 (949)
...+++++|+-+.+|.+|..==.++.=+|--.--. +.+..++-. .+|+||+.+.+|.|+--.=+.-.+.|.--... .
T Consensus 64 ~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~ 142 (370)
T COG1520 64 PADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGG-S 142 (370)
T ss_pred cEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCC-C
Confidence 47888999999999988887666666556211111 222222222 25667777777755544443444555544332 1
Q ss_pred CceeecCCCCCCCCCcceeecccCcEEEEecCCeEeEEEEeceeeeeecCCCCC-CcceEEeecccccccCeEEEEcc--
Q 043502 649 GRQVIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFKWKDCRHPL-DTKVACIVDQELFRENIVFVVGR-- 725 (949)
Q Consensus 649 G~~V~~G~pwdgipG~~~~vt~~dklF~vt~~GrLlq~tva~rkwkW~dhg~PP-gTkIata~d~~~~r~~~iFvvG~-- 725 (949)
-.+.+ ..|-.++.+|++|.+|+|+-.--.....+|.---.++ +..+... + ..+++++|+...
T Consensus 143 --~~~~~----------~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~--~-~~~~~~vy~~~~~~ 207 (370)
T COG1520 143 --PYYAS----------PPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGS--P-AIASGTVYVGSDGY 207 (370)
T ss_pred --eEEec----------CcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccC--c-eeecceEEEecCCC
Confidence 11111 1345788999999999999999999999998555443 3333332 2 277889999988
Q ss_pred CceEeeec--CceeeeeecC-CCCc-eeeecCCCceecCCCCCCcceEEEEecCCCeEEEEEeCCC-CeE
Q 043502 726 NGRLYQYN--KVTELWHEHY-QSQH-LVLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWD-GWN 790 (949)
Q Consensus 726 NGrLYEwN--g~TW~WhdHG-kP~~-t~ls~~pGtAM~psk~sl~gslFm~~snG~LyEr~Wntg~-gW~ 790 (949)
+|+||..| .++..|..+. .+.+ +..... .+.........+.+|+.+.+|+++.-.=++|. -|+
T Consensus 208 ~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~--~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~ 275 (370)
T COG1520 208 DGILYALNAEDGTLKWSQKVSQTIGRTAISTT--PAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWS 275 (370)
T ss_pred cceEEEEEccCCcEeeeeeeecccCccccccc--ccccCceEEECCcEEEEecCCeEEEEEcCCCceEEE
Confidence 88999944 5777788643 2222 111000 12222222334456888888888776555443 344
No 17
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.97 E-value=3.8 Score=46.10 Aligned_cols=127 Identities=18% Similarity=0.289 Sum_probs=82.5
Q ss_pred CccccccccccceEEEeccCcEEEEEecCCCceeeeccCCC--CC-ceeecCCCCCCCCCcceeeccc-CcEEEEecCCe
Q 043502 607 PMRGVLGNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMR--KG-RQVIGGPPWDGITGKAMKVTAE-DALFFVSKNGR 682 (949)
Q Consensus 607 ~m~g~~g~~ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr--~G-~~V~~G~pwdgipG~~~~vt~~-dklF~vt~~Gr 682 (949)
.+..++-..+|.||+.+.+|.|.-=.-..-...|.--.... +. ..++. .|.+. .+ +++|+.+.+|+
T Consensus 52 ~~~~sPvv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~-------~g~~~---~~~~~V~v~~~~g~ 121 (488)
T cd00216 52 GQEGTPLVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVN-------RGVAY---WDPRKVFFGTFDGR 121 (488)
T ss_pred CcccCCEEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCcccccccccc-------CCcEE---ccCCeEEEecCCCe
Confidence 35556667899999999999998777666677887644322 11 11222 13333 45 89999999999
Q ss_pred EeEEEEeceeeeeecCCCCCCcceEEeecccccccCeEEEEc---------cCceEeeecC--ceeeeeecC
Q 043502 683 LLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVG---------RNGRLYQYNK--VTELWHEHY 743 (949)
Q Consensus 683 Llq~tva~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG---------~NGrLYEwNg--~TW~WhdHG 743 (949)
|+-+-..+.+..|+..-.++.-.-..+...-++-++++|+.. .+|.||-++- +...|...-
T Consensus 122 v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 122 LVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred EEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 999988899999997665532000111122234456788764 4688998554 567787644
No 18
>PRK13684 Ycf48-like protein; Provisional
Probab=95.33 E-value=1.7 Score=46.70 Aligned_cols=214 Identities=12% Similarity=0.184 Sum_probs=115.4
Q ss_pred CceEEEEeeCCeeEEEEecCCEEEEEecCCC-CCccccccccccceEEEeccCcEEEEEecCCCceeeeccCCCCCceee
Q 043502 575 SRSFFLITDGGFTFEYLYAESVWLWLRHDHS-TPMRGVLGNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQVI 653 (949)
Q Consensus 575 ~~s~fliTd~G~~fE~~~~~~~WlWl~H~h~-T~m~g~~g~~ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G~~V~ 653 (949)
...+|..+|.|.+|+++.... ..| ++. +....-++.+|++...|.|+.-.=.|..|.=++...
T Consensus 108 ~g~i~~S~DgG~tW~~~~~~~-------~~~~~~~-~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~-------- 171 (334)
T PRK13684 108 PSLLLHTTDGGKNWTRIPLSE-------KLPGSPY-LITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDA-------- 171 (334)
T ss_pred CceEEEECCCCCCCeEccCCc-------CCCCCce-EEEEECCCcceeeeccceEEEECCCCCCceeCcCCC--------
Confidence 456888888899999875321 011 111 111112345778888888876655555554332211
Q ss_pred cCCCCCCCCCcceeecccCcEEEEecCCeEeEEEEeceeeeeecCCCCCCcceEEeecccccccCeEEEEccCceEee-e
Q 043502 654 GGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQ-Y 732 (949)
Q Consensus 654 ~G~pwdgipG~~~~vt~~dklF~vt~~GrLlq~tva~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~NGrLYE-w 732 (949)
.| .-..+.+..+..++++..+|.+|. +.....-+|..+-.|....+..+ +...++.++++|.+|.++- =
T Consensus 172 -----~g-~~~~i~~~~~g~~v~~g~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i---~~~~~g~~~~vg~~G~~~~~s 241 (334)
T PRK13684 172 -----AG-VVRNLRRSPDGKYVAVSSRGNFYS-TWEPGQTAWTPHQRNSSRRLQSM---GFQPDGNLWMLARGGQIRFND 241 (334)
T ss_pred -----cc-eEEEEEECCCCeEEEEeCCceEEE-EcCCCCCeEEEeeCCCcccceee---eEcCCCCEEEEecCCEEEEcc
Confidence 11 001123345566777888887774 33333456777766655555433 2334567888999998753 1
Q ss_pred cCceeeeeecCCCCceeeecCCCceecCCCCCCcceEEEEecCCCeEEEEEeCCCCeEEeec--CCCCCCceeecCCCCc
Q 043502 733 NKVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWDGWNWVEH--GTPGKGVTLVGSPGPC 810 (949)
Q Consensus 733 Ng~TW~WhdHGkP~~t~ls~~pGtAM~psk~sl~gslFm~~snG~LyEr~Wntg~gW~WVdH--GtP~~gvtvv~spG~s 810 (949)
...-.+|+.+..|... +...=.++.... .+.+++++.+|.+|. .-+.|..|.=+.- +.|. ..+ ...
T Consensus 242 ~d~G~sW~~~~~~~~~--~~~~l~~v~~~~---~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~-~~~-----~~~ 309 (334)
T PRK13684 242 PDDLESWSKPIIPEIT--NGYGYLDLAYRT---PGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPS-NFY-----KIV 309 (334)
T ss_pred CCCCCccccccCCccc--cccceeeEEEcC---CCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCc-ceE-----EEE
Confidence 2333456665555221 000012232211 456999999999985 3355556655432 2221 111 111
Q ss_pred c-cCceEEEEecCCceE
Q 043502 811 L-HGNQLLLIGSDGKVY 826 (949)
Q Consensus 811 f-~gsqLFviGSDG~LY 826 (949)
| .++++|++|..|.+-
T Consensus 310 ~~~~~~~~~~G~~G~il 326 (334)
T PRK13684 310 FLDPEKGFVLGQRGVLL 326 (334)
T ss_pred EeCCCceEEECCCceEE
Confidence 1 257899999999764
No 19
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=94.82 E-value=0.025 Score=59.46 Aligned_cols=156 Identities=18% Similarity=0.255 Sum_probs=67.8
Q ss_pred cccceEEEeccCcEEEE-EecCCCceeeeccCCCCCceeecCCCCCCCCCcceeecccCcEEEEecCCeEeEEEE-ecee
Q 043502 615 YNGSLYMVDLYGSLLIR-ERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTV-ALRK 692 (949)
Q Consensus 615 ~ngsLf~vd~~GsL~~R-~~~g~~~~W~n~t~mr~G~~V~~G~pwdgipG~~~~vt~~dklF~vt~~GrLlq~tv-a~rk 692 (949)
=||.||.|..+ .|+-. ..+...=.|..+ .+||-.| -|+..- .+-+-....||-|+++|+||-+.- ....
T Consensus 43 P~g~lY~I~~~-~lY~~~~~~~~~~~~~~~-----~~~Ig~g-~W~~F~--~i~~d~~G~LYaV~~~G~lyR~~~~~~~~ 113 (229)
T PF14517_consen 43 PNGRLYAIRND-GLYRGSPSSSGGNTWDSG-----SKQIGDG-GWNSFK--FIFFDPTGVLYAVTPDGKLYRHPRPTNGS 113 (229)
T ss_dssp TTS-EEEEETT-EEEEES---STT--HHHH------EEEE-S--GGG-S--EEEE-TTS-EEEEETT-EEEEES---STT
T ss_pred CCceEEEEECC-ceEEecCCccCccccccc-----CcccccC-ccccee--EEEecCCccEEEeccccceeeccCCCccC
Confidence 48889999855 44444 122222222222 2444443 455554 233457889999999999966432 4444
Q ss_pred eeeec-CCCCC-CcceEEeeccc-ccccCeEEEEccCceEee---ecCceeeeeecCCCCceeeecCCCceecCCCCCCc
Q 043502 693 FKWKD-CRHPL-DTKVACIVDQE-LFRENIVFVVGRNGRLYQ---YNKVTELWHEHYQSQHLVLSILPGTAMRPPSASLT 766 (949)
Q Consensus 693 wkW~d-hg~PP-gTkIata~d~~-~~r~~~iFvvG~NGrLYE---wNg~TW~WhdHGkP~~t~ls~~pGtAM~psk~sl~ 766 (949)
..|-. -+..- ++...-- +.. -..++.+|++..||+||| ..+.+..|.+ .+..+.........-...+-.
T Consensus 114 ~~W~~~~~~~iG~~GW~~f-~~vfa~~~GvLY~i~~dg~~~~~~~p~~~~~~W~~----~s~~v~~~gw~~~~~i~~~~~ 188 (229)
T PF14517_consen 114 DNWIGGSGKKIGGTGWNDF-DAVFAGPNGVLYAITPDGRLYRRYRPDGGSDRWLS----GSGLVGGGGWDSFHFIFFSPD 188 (229)
T ss_dssp --HHH-HSEEEE-SSGGGE-EEEEE-TTS-EEEEETTE-EEEE---SSTT--HHH----H-EEEESSSGGGEEEEEE-TT
T ss_pred cchhhccceecccCCCccc-eEEEeCCCccEEEEcCCCceEEeCCCCCCCCcccc----ccceeccCCcccceEEeeCCC
Confidence 55543 12211 1111111 111 234567888888888888 3455555654 222222211111111123345
Q ss_pred ceEEEEecCCCeEEEEEe
Q 043502 767 GSLFMLSEDGGLVEYHWN 784 (949)
Q Consensus 767 gslFm~~snG~LyEr~Wn 784 (949)
+.||.+.+||.||++...
T Consensus 189 g~L~~V~~~G~lyr~~~p 206 (229)
T PF14517_consen 189 GNLWAVKSNGKLYRGRPP 206 (229)
T ss_dssp S-EEEE-ETTEEEEES--
T ss_pred CcEEEEecCCEEeccCCc
Confidence 689999999999964433
No 20
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=92.10 E-value=0.27 Score=51.97 Aligned_cols=152 Identities=20% Similarity=0.294 Sum_probs=71.9
Q ss_pred cceEEEEecCceEEEEeeCCeeEEE---EecCCEEEEEecCCCCCcccc-ccc-------cccceEEEeccCcEEEEEe-
Q 043502 566 YFRLRVMHGSRSFFLITDGGFTFEY---LYAESVWLWLRHDHSTPMRGV-LGN-------YNGSLYMVDLYGSLLIRER- 633 (949)
Q Consensus 566 nf~~rvmh~~~s~fliTd~G~~fE~---~~~~~~WlWl~H~h~T~m~g~-~g~-------~ngsLf~vd~~GsL~~R~~- 633 (949)
||++=..|.+..||.|..| .+|.+ -...+.|. ++. +.+--. -+. =+|-||.|+.+|+|.-.+.
T Consensus 35 ~~~~i~~~P~g~lY~I~~~-~lY~~~~~~~~~~~~~--~~~--~~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~lyR~~~~ 109 (229)
T PF14517_consen 35 NFRDIAAGPNGRLYAIRND-GLYRGSPSSSGGNTWD--SGS--KQIGDGGWNSFKFIFFDPTGVLYAVTPDGKLYRHPRP 109 (229)
T ss_dssp T-SEEEE-TTS-EEEEETT-EEEEES---STT--HH--HH---EEEE-S-GGG-SEEEE-TTS-EEEEETT-EEEEES--
T ss_pred ccceEEEcCCceEEEEECC-ceEEecCCccCccccc--ccC--cccccCcccceeEEEecCCccEEEeccccceeeccCC
Confidence 5777788999999999954 77877 45666775 222 222111 112 4788999999999943333
Q ss_pred cCCCceeeeccCCCCCceeecCCCCCCCCCcceeecccCcEEEEecCCeEeEEEE-eceeeeeecC-CCCCCcc---eEE
Q 043502 634 SSNELAWINCTAMRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTV-ALRKFKWKDC-RHPLDTK---VAC 708 (949)
Q Consensus 634 ~g~~~~W~n~t~mr~G~~V~~G~pwdgipG~~~~vt~~dklF~vt~~GrLlq~tv-a~rkwkW~dh-g~PPgTk---Iat 708 (949)
..+.-.|++-. |+ .|++.=|.. -.+.-...+..||.++.|||++|+.- +...-+|-+- +...+.. -.+
T Consensus 110 ~~~~~~W~~~~----~~-~iG~~GW~~--f~~vfa~~~GvLY~i~~dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~ 182 (229)
T PF14517_consen 110 TNGSDNWIGGS----GK-KIGGTGWND--FDAVFAGPNGVLYAITPDGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHF 182 (229)
T ss_dssp -STT--HHH-H----SE-EEE-SSGGG--EEEEEE-TTS-EEEEETTE-EEEE---SSTT--HHHH-EEEESSSGGGEEE
T ss_pred CccCcchhhcc----ce-ecccCCCcc--ceEEEeCCCccEEEEcCCCceEEeCCCCCCCCccccccceeccCCcccceE
Confidence 33445676511 12 232322433 12223347888999999999999843 3334444431 1111110 011
Q ss_pred eecccccccCeEEEEccCceEeee
Q 043502 709 IVDQELFRENIVFVVGRNGRLYQY 732 (949)
Q Consensus 709 a~d~~~~r~~~iFvvG~NGrLYEw 732 (949)
+ - ---++.|++|-+||+||++
T Consensus 183 i--~-~~~~g~L~~V~~~G~lyr~ 203 (229)
T PF14517_consen 183 I--F-FSPDGNLWAVKSNGKLYRG 203 (229)
T ss_dssp E--E-E-TTS-EEEE-ETTEEEEE
T ss_pred E--e-eCCCCcEEEEecCCEEecc
Confidence 1 0 0113478888899999873
No 21
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.83 E-value=9.9 Score=39.84 Aligned_cols=164 Identities=16% Similarity=0.203 Sum_probs=87.7
Q ss_pred CceeeeccCCCCCceeecCCCCCCCCCcceeecccCcEEEEecC------CeEeEEEEeceee--eeecCCCCCCcceEE
Q 043502 637 ELAWINCTAMRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSKN------GRLLQFTVALRKF--KWKDCRHPLDTKVAC 708 (949)
Q Consensus 637 ~~~W~n~t~mr~G~~V~~G~pwdgipG~~~~vt~~dklF~vt~~------GrLlq~tva~rkw--kW~dhg~PPgTkIat 708 (949)
.+.|.-.+.|++-+.-.+ + |+.+++||++.-. ..++.+-....+| +|......|...-..
T Consensus 50 ~~~W~~~~~lp~~r~~~~---------~---~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~ 117 (323)
T TIGR03548 50 NLKWVKDGQLPYEAAYGA---------S---VSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG 117 (323)
T ss_pred ceeEEEcccCCccccceE---------E---EEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc
Confidence 457988888876553211 1 3468899987532 2455555555665 577766555443322
Q ss_pred eecccccccCeEEEEccC--c----eEeeecCceeeeeecCCCCceeeecCCCceecCCCCCCcceEEEEec-CCCe---
Q 043502 709 IVDQELFRENIVFVVGRN--G----RLYQYNKVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSE-DGGL--- 778 (949)
Q Consensus 709 a~d~~~~r~~~iFvvG~N--G----rLYEwNg~TW~WhdHGkP~~t~ls~~pGtAM~psk~sl~gslFm~~s-nG~L--- 778 (949)
+ ..++ +++|||.|.. + .+|.|+-.+..|..--.-+... + .+.+++ .+.+++|+.+- ++..
T Consensus 118 ~--~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~--r-~~~~~~----~~~~~iYv~GG~~~~~~~~ 187 (323)
T TIGR03548 118 S--ACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP--R-VQPVCV----KLQNELYVFGGGSNIAYTD 187 (323)
T ss_pred e--EEEE-CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC--C-CcceEE----EECCEEEEEcCCCCccccc
Confidence 2 2344 5688888763 2 4777998888998643212111 1 122222 23456888764 2222
Q ss_pred EEEEEeCC-CCeEEeecC-CCCCCceeecCCCCcccCceEEEEecCC
Q 043502 779 VEYHWNTW-DGWNWVEHG-TPGKGVTLVGSPGPCLHGNQLLLIGSDG 823 (949)
Q Consensus 779 yEr~Wntg-~gW~WVdHG-tP~~gvtvv~spG~sf~gsqLFviGSDG 823 (949)
.|.| |.. ..|.-+.-= .+..+.......+.++.++++|++|+..
T Consensus 188 ~~~y-d~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 188 GYKY-SPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred eEEE-ecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 2333 433 467665421 0011122223333345578999999854
No 22
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=91.42 E-value=11 Score=34.36 Aligned_cols=147 Identities=8% Similarity=0.026 Sum_probs=65.7
Q ss_pred eEEEEecCceEEEEeeCCeeEEEEecCC--EEEEEecCCCCCccccccccccceEEEec-cCcEEEEEecCCCceeeecc
Q 043502 568 RLRVMHGSRSFFLITDGGFTFEYLYAES--VWLWLRHDHSTPMRGVLGNYNGSLYMVDL-YGSLLIRERSSNELAWINCT 644 (949)
Q Consensus 568 ~~rvmh~~~s~fliTd~G~~fE~~~~~~--~WlWl~H~h~T~m~g~~g~~ngsLf~vd~-~GsL~~R~~~g~~~~W~n~t 644 (949)
.+.....++.++..+.+|.++-+-...+ ......|. .++....-.-++.+++... +|.+.+-.-.......
T Consensus 56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---- 129 (289)
T cd00200 56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHT--SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT---- 129 (289)
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccC--CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE----
Confidence 3444444556666677787765554442 23333333 2222222223345666655 7776654332111100
Q ss_pred CCCCCceeecCCCCCCCCCcceeecccCcEEEEec-CCeEeEEEEece--eeeeecCCCCCCcceEEeecccccccCeEE
Q 043502 645 AMRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSK-NGRLLQFTVALR--KFKWKDCRHPLDTKVACIVDQELFRENIVF 721 (949)
Q Consensus 645 ~mr~G~~V~~G~pwdgipG~~~~vt~~dklF~vt~-~GrLlq~tva~r--kwkW~dhg~PPgTkIata~d~~~~r~~~iF 721 (949)
.+.+. =+ +=..+.+..+..++++.. +|.+.-+-.... ..+...|..+ =+.++.. -+++.++
T Consensus 130 -------~~~~~-~~--~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~-----~~~~~l~ 193 (289)
T cd00200 130 -------TLRGH-TD--WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE-VNSVAFS-----PDGEKLL 193 (289)
T ss_pred -------EeccC-CC--cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccc-cceEEEC-----CCcCEEE
Confidence 11100 00 112233444455555555 777765444211 2223333322 1111211 1223778
Q ss_pred EEccCceEeeecCce
Q 043502 722 VVGRNGRLYQYNKVT 736 (949)
Q Consensus 722 vvG~NGrLYEwNg~T 736 (949)
+.+.+|.++-|+-.+
T Consensus 194 ~~~~~~~i~i~d~~~ 208 (289)
T cd00200 194 SSSSDGTIKLWDLST 208 (289)
T ss_pred EecCCCcEEEEECCC
Confidence 888899988876543
No 23
>PHA02790 Kelch-like protein; Provisional
Probab=90.56 E-value=20 Score=40.50 Aligned_cols=194 Identities=16% Similarity=0.205 Sum_probs=104.6
Q ss_pred EEecCceEEEEeeCCe-------eEEEEe-cCCEEEEEecCCCCCc-cccccccccceEEEeccC--cEEEEEecCCCce
Q 043502 571 VMHGSRSFFLITDGGF-------TFEYLY-AESVWLWLRHDHSTPM-RGVLGNYNGSLYMVDLYG--SLLIRERSSNELA 639 (949)
Q Consensus 571 vmh~~~s~fliTd~G~-------~fE~~~-~~~~WlWl~H~h~T~m-~g~~g~~ngsLf~vd~~G--sL~~R~~~g~~~~ 639 (949)
+.+-+..+|++ +|. ..|+|. ..+.|.=+.- -|+|- ..+..+.+|.||+++-.. +-.+|+ .-..-.
T Consensus 267 ~~~~~~~lyvi--GG~~~~~~~~~v~~Ydp~~~~W~~~~~-m~~~r~~~~~v~~~~~iYviGG~~~~~sve~y-dp~~n~ 342 (480)
T PHA02790 267 STHVGEVVYLI--GGWMNNEIHNNAIAVNYISNNWIPIPP-MNSPRLYASGVPANNKLYVVGGLPNPTSVERW-FHGDAA 342 (480)
T ss_pred eEEECCEEEEE--cCCCCCCcCCeEEEEECCCCEEEECCC-CCchhhcceEEEECCEEEEECCcCCCCceEEE-ECCCCe
Confidence 33445677776 332 233332 3444543321 12333 344455999999997642 223454 233446
Q ss_pred eeeccCCCCCceeecCCCCCCCCCcceeecccCcEEEEec-CC--eEeEEEEeceeeeeecCCCCCCcceEEeecccccc
Q 043502 640 WINCTAMRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSK-NG--RLLQFTVALRKFKWKDCRHPLDTKVACIVDQELFR 716 (949)
Q Consensus 640 W~n~t~mr~G~~V~~G~pwdgipG~~~~vt~~dklF~vt~-~G--rLlq~tva~rkwkW~dhg~PPgTkIata~d~~~~r 716 (949)
|...+.|+..+. + ++. +..++++|++.- ++ ...+. ...+.-+|...- |..+....+ ..+.+
T Consensus 343 W~~~~~l~~~r~---~------~~~---~~~~g~IYviGG~~~~~~~ve~-ydp~~~~W~~~~-~m~~~r~~~-~~~~~- 406 (480)
T PHA02790 343 WVNMPSLLKPRC---N------PAV---ASINNVIYVIGGHSETDTTTEY-LLPNHDQWQFGP-STYYPHYKS-CALVF- 406 (480)
T ss_pred EEECCCCCCCCc---c------cEE---EEECCEEEEecCcCCCCccEEE-EeCCCCEEEeCC-CCCCccccc-eEEEE-
Confidence 888777765443 2 222 337899998743 22 22333 245556776643 333443332 22345
Q ss_pred cCeEEEEccCceEeeecCceeeeeecCCCCceeeecCCCceecCCCCCCcceEEEEecC-C----CeEEEEEeCCCCeEE
Q 043502 717 ENIVFVVGRNGRLYQYNKVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSED-G----GLVEYHWNTWDGWNW 791 (949)
Q Consensus 717 ~~~iFvvG~NGrLYEwNg~TW~WhdHGkP~~t~ls~~pGtAM~psk~sl~gslFm~~sn-G----~LyEr~Wntg~gW~W 791 (949)
+++|||.|. ...-|+-.+..|..-...+... ...|+|... +++|+.|.. + +.+|.|=-..+.|.=
T Consensus 407 ~~~IYv~GG--~~e~ydp~~~~W~~~~~m~~~r--~~~~~~v~~------~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 407 GRRLFLVGR--NAEFYCESSNTWTLIDDPIYPR--DNPELIIVD------NKLLLIGGFYRGSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred CCEEEEECC--ceEEecCCCCcEeEcCCCCCCc--cccEEEEEC------CEEEEECCcCCCcccceEEEEECCCCeEEe
Confidence 569999994 3333777777887654333221 123444443 569998752 1 468888777778885
Q ss_pred eec
Q 043502 792 VEH 794 (949)
Q Consensus 792 VdH 794 (949)
-||
T Consensus 477 ~~~ 479 (480)
T PHA02790 477 WDG 479 (480)
T ss_pred cCC
Confidence 555
No 24
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=90.19 E-value=3.5 Score=49.98 Aligned_cols=205 Identities=16% Similarity=0.182 Sum_probs=116.3
Q ss_pred eeehhccCceEEEecCCCCcceEEEeeccccccccccccccceeEeecceeecCCcEEEEEecCCceeEee--ccCCCcc
Q 043502 184 ILALAEAGVLYQMQLGDNSQPIWVEFIPAIDQSINGEAEQRSVIQIKSGVVSQDGERVYFCTKNGLLLELS--EVEPPRW 261 (949)
Q Consensus 184 ilalseag~lyqmql~e~sqpiw~ef~~~~~~~~~~~~~qs~~~~ik~gvvs~dg~~lff~~knG~LLe~t--el~p~rW 261 (949)
++.||+.|.+=-+.+.+-..-- -.+..-+..+.++.. .++.-++.....+|+|.|..|+++.+. ++..-+|
T Consensus 499 ~vllS~~GyIKri~~~~~~~~~----~~~~g~s~~klKe~D---~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r 571 (800)
T TIGR01063 499 VVTLSHNGYVKRVPVSAYRLQK----RGGKGVSGADMKDDD---FIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASR 571 (800)
T ss_pred EEEEcCCCEEEecchhhhhhhc----ccCcCccccccCCCC---eeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCc
Confidence 4678888877666554321100 000111111111111 334445667788899999999999999 5888889
Q ss_pred ccCCCC--------CCCceeEEeeccccCC-ceEEEEccCCceeeeccCCchhhh-hhccccccccccccccCccccccc
Q 043502 262 LNHGRP--------PGANVAAIADAGNVRP-EVVYTISSTGDLYEYDRISKPSWR-KHIWSKGTAANASLIPSMACTLHG 331 (949)
Q Consensus 262 ~~hg~P--------Pga~VA~I~D~~~~R~-~vVftiss~GdLYeYnr~tkpsW~-kHiws~~l~~~~sl~~s~g~t~~g 331 (949)
+.-|.| +|-+|.+++-...+-+ +++++++++|-.-.-+-..-..=. +=+..-.+..+-.+....-|
T Consensus 572 ~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~---- 647 (800)
T TIGR01063 572 TAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLT---- 647 (800)
T ss_pred CCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEe----
Confidence 988886 7888887776555544 489999999955432211110000 00000000011111111111
Q ss_pred ccCCceeeEEEEecCCcEEEEEeec-cceeEEEcCCC-----CCCcccccceeccCCccccceEEEEEcccceEEEEeec
Q 043502 332 LIGDHSTSLFLLTKGGNLVERRIQQ-RKWKWIIHGSP-----EDTHLTSITPVQQDESNEKFFSLFLTTSAGAVFEYQIP 405 (949)
Q Consensus 332 l~g~~S~SLFlltk~G~LVErr~~q-rkWkWi~HGtP-----~~~~l~siT~v~~d~~~~~~~sLF~t~S~G~Vyey~~~ 405 (949)
...-.|+++|+.|.+.=...++ +-..+-.-|.+ .++.+.++.++.. ...++|+|+.|.+.+-.+.
T Consensus 648 ---~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~------~~~ll~vT~~G~~Kr~~l~ 718 (800)
T TIGR01063 648 ---SGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSE------ESYLLIVTENGYGKRTSIE 718 (800)
T ss_pred ---CCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEecc------ccEEEEEecCCcEEEEEHH
Confidence 1122599999999998766664 34444334443 3445555555521 1358899999999999987
Q ss_pred cCC
Q 043502 406 KYS 408 (949)
Q Consensus 406 k~t 408 (949)
.+.
T Consensus 719 e~~ 721 (800)
T TIGR01063 719 EYR 721 (800)
T ss_pred Hcc
Confidence 765
No 25
>PHA02713 hypothetical protein; Provisional
Probab=89.77 E-value=13 Score=42.88 Aligned_cols=197 Identities=13% Similarity=0.249 Sum_probs=105.6
Q ss_pred CEEEEEecCCCCCccc-cccccccceEEEeccC------cEEEEEecCCCceeeeccCCCCCceeecCCCCCCCCCccee
Q 043502 595 SVWLWLRHDHSTPMRG-VLGNYNGSLYMVDLYG------SLLIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAMK 667 (949)
Q Consensus 595 ~~WlWl~H~h~T~m~g-~~g~~ngsLf~vd~~G------sL~~R~~~g~~~~W~n~t~mr~G~~V~~G~pwdgipG~~~~ 667 (949)
+.|.=+. ..|++..+ +.+++++.||+++-.. +-.+++=- ..-.|.....|+..|. + ++++.
T Consensus 282 ~~W~~l~-~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~-~~n~W~~~~~m~~~R~---~------~~~~~- 349 (557)
T PHA02713 282 MEYSVIS-TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINI-ENKIHVELPPMIKNRC---R------FSLAV- 349 (557)
T ss_pred CeEEECC-CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEEC-CCCeEeeCCCCcchhh---c------eeEEE-
Confidence 3566554 23444433 4556899999987531 11223221 2235777777766553 2 23333
Q ss_pred ecccCcEEEEec-CCeE----eEEEEeceeeeeecCCCCCCcceEEeecccccccCeEEEEcc-Cc--------------
Q 043502 668 VTAEDALFFVSK-NGRL----LQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGR-NG-------------- 727 (949)
Q Consensus 668 vt~~dklF~vt~-~GrL----lq~tva~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~-NG-------------- 727 (949)
.++++|++.- +|.- .+. .....-+|......|-..-..+ ...+ +++|||.|. ++
T Consensus 350 --~~g~IYviGG~~~~~~~~sve~-Ydp~~~~W~~~~~mp~~r~~~~--~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~ 423 (557)
T PHA02713 350 --IDDTIYAIGGQNGTNVERTIEC-YTMGDDKWKMLPDMPIALSSYG--MCVL-DQYIYIIGGRTEHIDYTSVHHMNSID 423 (557)
T ss_pred --ECCEEEEECCcCCCCCCceEEE-EECCCCeEEECCCCCccccccc--EEEE-CCEEEEEeCCCccccccccccccccc
Confidence 7889998754 2321 222 2455567887665554443222 2345 457888764 32
Q ss_pred ---------eEeeecCceeeeeecCCCCceeeecCCCceecCCCCCCcceEEEEecC-C-----CeEEEEEeCC--CCeE
Q 043502 728 ---------RLYQYNKVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSED-G-----GLVEYHWNTW--DGWN 790 (949)
Q Consensus 728 ---------rLYEwNg~TW~WhdHGkP~~t~ls~~pGtAM~psk~sl~gslFm~~sn-G-----~LyEr~Wntg--~gW~ 790 (949)
.++.|+-.+..|..-..-+.... ..++|. +.++||+.+.. | ..+|+| ++. ..|+
T Consensus 424 ~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~--~~~~~~------~~~~IYv~GG~~~~~~~~~~ve~Y-dp~~~~~W~ 494 (557)
T PHA02713 424 MEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI--RPGVVS------HKDDIYVVCDIKDEKNVKTCIFRY-NTNTYNGWE 494 (557)
T ss_pred ccccccccceEEEECCCCCeEeecCCCCcccc--cCcEEE------ECCEEEEEeCCCCCCccceeEEEe-cCCCCCCee
Confidence 25558888888875443222211 122222 34679998742 1 125665 444 3676
Q ss_pred EeecCCCCCCceeecCCCCcccCceEEEEec-CC
Q 043502 791 WVEHGTPGKGVTLVGSPGPCLHGNQLLLIGS-DG 823 (949)
Q Consensus 791 WVdHGtP~~gvtvv~spG~sf~gsqLFviGS-DG 823 (949)
=+ . |. .... ..-|.+..+++|||+|+ ||
T Consensus 495 ~~--~-~m-~~~r-~~~~~~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 495 LI--T-TT-ESRL-SALHTILHDNTIMMLHCYES 523 (557)
T ss_pred Ec--c-cc-Cccc-ccceeEEECCEEEEEeeecc
Confidence 43 3 22 1111 13555677899999987 55
No 26
>PRK05560 DNA gyrase subunit A; Validated
Probab=89.71 E-value=8.1 Score=46.99 Aligned_cols=229 Identities=17% Similarity=0.222 Sum_probs=116.8
Q ss_pred eceeeehhccCceEEEecCCCCcceEEEeecccc-ccccccccccceeEeecceeecCCcEEEEEecCCceeEee--ccC
Q 043502 181 NQRILALAEAGVLYQMQLGDNSQPIWVEFIPAID-QSINGEAEQRSVIQIKSGVVSQDGERVYFCTKNGLLLELS--EVE 257 (949)
Q Consensus 181 n~tilalseag~lyqmql~e~sqpiw~ef~~~~~-~~~~~~~~qs~~~~ik~gvvs~dg~~lff~~knG~LLe~t--el~ 257 (949)
+++||..+..|.+|.+...+-..-=|...-..+. ...+.+.++--.+..-+.. .+...++++|++|..-.+. +++
T Consensus 548 ~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~--~~e~~lvlvTk~GyiKRi~l~~~~ 625 (805)
T PRK05560 548 HDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREF--DDDKYLFFATKNGTVKKTSLSEFS 625 (805)
T ss_pred CCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCC--CCCCEEEEEeCCCEEEEEEhHHhh
Confidence 4579999999999999654332222322111111 1111222221111111111 2677899999999877665 454
Q ss_pred CCccccCCC-----CCCCceeEEeeccccCCceEEEEccCCceeeeccCCchhhhhhccccccccccccccCccccccc-
Q 043502 258 PPRWLNHGR-----PPGANVAAIADAGNVRPEVVYTISSTGDLYEYDRISKPSWRKHIWSKGTAANASLIPSMACTLHG- 331 (949)
Q Consensus 258 p~rW~~hg~-----PPga~VA~I~D~~~~R~~vVftiss~GdLYeYnr~tkpsW~kHiws~~l~~~~sl~~s~g~t~~g- 331 (949)
.-+= .|. ..|-.+..+.-. +- .+-|+.++++|++|.++-..=|...+.-. +... ..|.. +-.+.+
T Consensus 626 ~~~r--~G~~~ikLke~D~lv~v~~~-~~-~d~lll~T~~Gr~~r~~~~eIp~~gr~~~--Gv~~-i~L~~--~E~Vv~~ 696 (805)
T PRK05560 626 NIRS--NGIIAINLDEGDELIGVRLT-DG-DDDILLATKNGKAIRFPESDVRPMGRTAR--GVRG-IKLRE--GDEVVSM 696 (805)
T ss_pred hccc--CCceeeccCCCCEEEEEEEe-CC-CCEEEEEECCCcEEEEEhhhcCccCcccC--Cccc-ccCCC--CCEEEEE
Confidence 3221 111 122233333211 21 25688889999999998766555544321 1100 11111 100000
Q ss_pred ccC-CceeeEEEEecCCc-----EEEEEeecc-ceeEEEcC-CCCCCcccccceeccCCccccceEEEEEcccceEEEEe
Q 043502 332 LIG-DHSTSLFLLTKGGN-----LVERRIQQR-KWKWIIHG-SPEDTHLTSITPVQQDESNEKFFSLFLTTSAGAVFEYQ 403 (949)
Q Consensus 332 l~g-~~S~SLFlltk~G~-----LVErr~~qr-kWkWi~HG-tP~~~~l~siT~v~~d~~~~~~~sLF~t~S~G~Vyey~ 403 (949)
+.. +..-.|+++|+.|. |-|++...| +--=+..- .-+.+.|-++.++..+ ..++++|+.|++..+.
T Consensus 697 ~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~------~~v~i~T~~G~~lrf~ 770 (805)
T PRK05560 697 DVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPVDDD------DEIMLITDSGKLIRTR 770 (805)
T ss_pred EEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEecCC------CeEEEEecCCeEEEEE
Confidence 000 11114889999983 445555433 22222221 1223566666665322 2499999999999988
Q ss_pred eccCCCCCccccccccccccCCCcccccccCCCCcccccce
Q 043502 404 IPKYSGTSQENQFSGGWISHLHPPHARAARGAVGLPFQVGR 444 (949)
Q Consensus 404 ~~k~tg~~q~nq~~~~W~sh~~P~~ak~a~~~~g~pfq~gr 444 (949)
..+ .|.-.+.|+|++++-+.+|.
T Consensus 771 ~~e------------------I~~~gR~a~GVk~I~L~~~D 793 (805)
T PRK05560 771 VSE------------------ISITGRNTQGVRLIRLDEGD 793 (805)
T ss_pred HHH------------------CCccccCCCCeeeEecCCCC
Confidence 722 45556677888777775543
No 27
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=88.41 E-value=15 Score=41.02 Aligned_cols=148 Identities=13% Similarity=0.109 Sum_probs=75.0
Q ss_pred ecceeecCCcEEEEEec---CCceeEeeccCCCccccCCCCCCCceeEEeeccccCC-----------------ceEEEE
Q 043502 230 KSGVVSQDGERVYFCTK---NGLLLELSEVEPPRWLNHGRPPGANVAAIADAGNVRP-----------------EVVYTI 289 (949)
Q Consensus 230 k~gvvs~dg~~lff~~k---nG~LLe~tel~p~rW~~hg~PPga~VA~I~D~~~~R~-----------------~vVfti 289 (949)
-.|++|.||+.||.|+. +| -|..+.++-.|.|.++.++ ...|.+
T Consensus 49 P~~~~spDg~~lyva~~~~~R~----------------~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~l 112 (352)
T TIGR02658 49 PNPVVASDGSFFAHASTVYSRI----------------ARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSL 112 (352)
T ss_pred CceeECCCCCEEEEEecccccc----------------ccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEE
Confidence 34689999999999998 11 2333444444444444332 237899
Q ss_pred ccCCc-eeeeccCCchhhh-hhccccccccccccccCcccccccccCCceeeEEEEecCCcEEEEEee-ccceeEEEcCC
Q 043502 290 SSTGD-LYEYDRISKPSWR-KHIWSKGTAANASLIPSMACTLHGLIGDHSTSLFLLTKGGNLVERRIQ-QRKWKWIIHGS 366 (949)
Q Consensus 290 ss~Gd-LYeYnr~tkpsW~-kHiws~~l~~~~sl~~s~g~t~~gl~g~~S~SLFlltk~G~LVErr~~-qrkWkWi~HGt 366 (949)
+.+|+ ||=+|-.-..+=- =-.. .+.+....+ -.+|.+.=-+++- +-+++..||.+....+- +.+ ...-+
T Consensus 113 s~dgk~l~V~n~~p~~~V~VvD~~-~~kvv~ei~--vp~~~~vy~t~e~--~~~~~~~Dg~~~~v~~d~~g~---~~~~~ 184 (352)
T TIGR02658 113 TPDNKTLLFYQFSPSPAVGVVDLE-GKAFVRMMD--VPDCYHIFPTAND--TFFMHCRDGSLAKVGYGTKGN---PKIKP 184 (352)
T ss_pred CCCCCEEEEecCCCCCEEEEEECC-CCcEEEEEe--CCCCcEEEEecCC--ccEEEeecCceEEEEecCCCc---eEEee
Confidence 99996 8877744110000 0000 111111112 2345554444432 44577889999887776 333 11111
Q ss_pred -CCCCcccccceeccCC--ccccceEEEEEcccceEEEEee
Q 043502 367 -PEDTHLTSITPVQQDE--SNEKFFSLFLTTSAGAVFEYQI 404 (949)
Q Consensus 367 -P~~~~l~siT~v~~d~--~~~~~~sLF~t~S~G~Vyey~~ 404 (949)
|--+ ..-.|+++-- ...++..||++-. |.||.-.+
T Consensus 185 ~~vf~--~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~ 222 (352)
T TIGR02658 185 TEVFH--PEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDL 222 (352)
T ss_pred eeeec--CCccccccCCceEcCCCcEEEEecC-CeEEEEec
Confidence 1000 0001222211 2324566666655 99998876
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=88.19 E-value=20 Score=32.67 Aligned_cols=214 Identities=15% Similarity=0.173 Sum_probs=95.6
Q ss_pred cCceEEEEeeCCeeEEEEecCCEEEEEecCCCCCcccccccccc-ceEEEeccCcEEEEEecCCCceeeeccCCCCCcee
Q 043502 574 GSRSFFLITDGGFTFEYLYAESVWLWLRHDHSTPMRGVLGNYNG-SLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQV 652 (949)
Q Consensus 574 ~~~s~fliTd~G~~fE~~~~~~~WlWl~H~h~T~m~g~~g~~ng-sLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G~~V 652 (949)
.++.++..+.||.++=+-...+.=...-.+|..++....=.-++ .|++...+|.+.+-..........
T Consensus 20 ~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~----------- 88 (289)
T cd00200 20 DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT----------- 88 (289)
T ss_pred CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE-----------
Confidence 33445555557766544333332222222333232222222233 566667788777655544311111
Q ss_pred ecCCCCCCCCCcceeecccCcEEEEec-CCeEeEEEEeceee--eeecCCCCCCcceEEeecccccccCeEEEEcc-Cce
Q 043502 653 IGGPPWDGITGKAMKVTAEDALFFVSK-NGRLLQFTVALRKF--KWKDCRHPLDTKVACIVDQELFRENIVFVVGR-NGR 728 (949)
Q Consensus 653 ~~G~pwdgipG~~~~vt~~dklF~vt~-~GrLlq~tva~rkw--kW~dhg~PPgTkIata~d~~~~r~~~iFvvG~-NGr 728 (949)
+.+. .-+-..+....++.+++++. +|++.-+-....+. ....|..+ -+.++. ..++.+++++. ||.
T Consensus 89 ~~~~---~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~~~~~------~~~~~~l~~~~~~~~ 158 (289)
T cd00200 89 LTGH---TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW-VNSVAF------SPDGTFVASSSQDGT 158 (289)
T ss_pred Eecc---CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCc-EEEEEE------cCcCCEEEEEcCCCc
Confidence 1110 00122344555567777776 88887655542222 22233222 111222 22245555555 999
Q ss_pred EeeecCc----eeeeeecCCCCceeeecCCCceecCCCCCCcceEEEEecCCCeEEEEEeCCCCe---EEeecCCCCCCc
Q 043502 729 LYQYNKV----TELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWDGW---NWVEHGTPGKGV 801 (949)
Q Consensus 729 LYEwNg~----TW~WhdHGkP~~t~ls~~pGtAM~psk~sl~gslFm~~snG~LyEr~Wntg~gW---~WVdHGtP~~gv 801 (949)
++-|+-. ......|..+-.. .++.|. +..+++.+.||.++ .|+...+= .+..|..|..
T Consensus 159 i~i~d~~~~~~~~~~~~~~~~i~~-------~~~~~~----~~~l~~~~~~~~i~--i~d~~~~~~~~~~~~~~~~i~-- 223 (289)
T cd00200 159 IKLWDLRTGKCVATLTGHTGEVNS-------VAFSPD----GEKLLSSSSDGTIK--LWDLSTGKCLGTLRGHENGVN-- 223 (289)
T ss_pred EEEEEccccccceeEecCccccce-------EEECCC----cCEEEEecCCCcEE--EEECCCCceecchhhcCCceE--
Confidence 8886543 1223333221111 222221 13566677788776 45533210 0113333321
Q ss_pred eeecCCCCccc-CceEEEEec-CCceEEEEEe
Q 043502 802 TLVGSPGPCLH-GNQLLLIGS-DGKVYLRYMD 831 (949)
Q Consensus 802 tvv~spG~sf~-gsqLFviGS-DG~LYeRywd 831 (949)
.+ +|. ++++++.++ ||.++ .|+
T Consensus 224 ~~------~~~~~~~~~~~~~~~~~i~--i~~ 247 (289)
T cd00200 224 SV------AFSPDGYLLASGSEDGTIR--VWD 247 (289)
T ss_pred EE------EEcCCCcEEEEEcCCCcEE--EEE
Confidence 11 122 267888887 88875 455
No 29
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.17 E-value=7.6 Score=44.72 Aligned_cols=131 Identities=13% Similarity=0.185 Sum_probs=81.9
Q ss_pred ccccccccccceEEEeccCcEEEEEecCCCceeeeccCCCCCce-eecCCCCCCCCCcceeecccCcEEEEecCCeEeEE
Q 043502 608 MRGVLGNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQ-VIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQF 686 (949)
Q Consensus 608 m~g~~g~~ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G~~-V~~G~pwdgipG~~~~vt~~dklF~vt~~GrLlq~ 686 (949)
+..++-..+|.||+.+.+|.|.-=....-...|.--...+.+.. +....+ --.|.+. .++++|+.+.+|+|+-+
T Consensus 61 ~~stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~--~~rg~av---~~~~v~v~t~dg~l~AL 135 (527)
T TIGR03075 61 QESQPLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDV--VNRGVAL---YDGKVFFGTLDARLVAL 135 (527)
T ss_pred cccCCEEECCEEEEECCCCcEEEEECCCCceeeEecCCCCccccccccccc--ccccceE---ECCEEEEEcCCCEEEEE
Confidence 44556668999999999999887776666788875533221110 000000 0123344 68899999999999998
Q ss_pred EEeceeeeeecCC-CCC-CcceEEeecccccccCeEEEEc------cCceEeeec--CceeeeeecCCCC
Q 043502 687 TVALRKFKWKDCR-HPL-DTKVACIVDQELFRENIVFVVG------RNGRLYQYN--KVTELWHEHYQSQ 746 (949)
Q Consensus 687 tva~rkwkW~dhg-~PP-gTkIata~d~~~~r~~~iFvvG------~NGrLYEwN--g~TW~WhdHGkP~ 746 (949)
--.+.+..|+.-- .+. +.-+.. .+.+. +++||+.. .+|.|+-++ .+..+|..|--|+
T Consensus 136 Da~TGk~~W~~~~~~~~~~~~~ts--sP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~ 202 (527)
T TIGR03075 136 DAKTGKVVWSKKNGDYKAGYTITA--APLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPG 202 (527)
T ss_pred ECCCCCEEeecccccccccccccC--CcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCC
Confidence 8888999997532 221 212222 24455 44777764 378998843 4556788777654
No 30
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=85.66 E-value=19 Score=43.94 Aligned_cols=228 Identities=18% Similarity=0.215 Sum_probs=114.1
Q ss_pred eceeeehhccCceEEEecCCCCcceEEEeecccc-cccccccccc-ceeEeecceeecCCcEEEEEecCCceeEee--cc
Q 043502 181 NQRILALAEAGVLYQMQLGDNSQPIWVEFIPAID-QSINGEAEQR-SVIQIKSGVVSQDGERVYFCTKNGLLLELS--EV 256 (949)
Q Consensus 181 n~tilalseag~lyqmql~e~sqpiw~ef~~~~~-~~~~~~~~qs-~~~~ik~gvvs~dg~~lff~~knG~LLe~t--el 256 (949)
+++||..+..|.+|++...+-..--|..--..+. .....+.|+- .++.+++ -.+...++++|++|.+-.+. ++
T Consensus 546 ~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~---~~~~~~lvliT~~GyiKRi~l~~~ 622 (800)
T TIGR01063 546 HDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKE---FDDGLYLFFATKNGVVKKTSLTEF 622 (800)
T ss_pred CCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEecc---CCCCCEEEEEeCCCEEEEEEhHHh
Confidence 3569999999999999332221111222111110 0111111111 1111111 14667899999999887765 45
Q ss_pred CCCccccCCC-----CCCCceeEEeeccccCCceEEEEccCCceeeeccCCchhhhhhccccccccccccccCccccccc
Q 043502 257 EPPRWLNHGR-----PPGANVAAIADAGNVRPEVVYTISSTGDLYEYDRISKPSWRKHIWSKGTAANASLIPSMACTLHG 331 (949)
Q Consensus 257 ~p~rW~~hg~-----PPga~VA~I~D~~~~R~~vVftiss~GdLYeYnr~tkpsW~kHiws~~l~~~~sl~~s~g~t~~g 331 (949)
+.-+- .|. ..|-.+.++.-+.. . +-|+.++++|++|.++-..=|...+-- .+.. ...|.. +-.+.+
T Consensus 623 ~~~~r--~G~~aiklke~D~lv~v~~~~~-~-d~lll~Ts~Gr~~r~~v~eIp~~gr~~--~Gv~-~i~L~~--~E~Vv~ 693 (800)
T TIGR01063 623 SNIRS--NGIIAIKLDDGDELISVRLTSG-D-DEVMLGSKNGKAVRFPEEDVRPMGRAA--RGVR-GIKLKN--EDFVVS 693 (800)
T ss_pred hhhcc--CCcccccCCCCCEEEEEEEeCC-C-CEEEEEECCCcEEEEEhhhcCCcCCCC--CCee-cccCCC--CCEEEE
Confidence 43321 121 12333433322221 2 448888899999999776555444311 1110 001110 000000
Q ss_pred c-cCCceeeEEEEecCCc-----EEEEEeecc-ceeEEEcC-CCCCCcccccceeccCCccccceEEEEEcccceEEEEe
Q 043502 332 L-IGDHSTSLFLLTKGGN-----LVERRIQQR-KWKWIIHG-SPEDTHLTSITPVQQDESNEKFFSLFLTTSAGAVFEYQ 403 (949)
Q Consensus 332 l-~g~~S~SLFlltk~G~-----LVErr~~qr-kWkWi~HG-tP~~~~l~siT~v~~d~~~~~~~sLF~t~S~G~Vyey~ 403 (949)
+ .-.....|.++|+.|. |-|++...| +.-=+..- ..+.+.|-++.++..+ -.++++|++|++..+.
T Consensus 694 ~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~ikl~~~~d~lv~~~~v~~~------~~v~liT~~G~~lrf~ 767 (800)
T TIGR01063 694 LLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSIKITDRNGQVVGAIAVDDD------DELMLITSAGKLIRTS 767 (800)
T ss_pred EEEeccccEEEEEecCCcEEEEEHHHccccCCCCcceEEEEccCCCCeEEEEEEecCC------CeEEEEecCCeEEEee
Confidence 0 0001125889999993 445655433 23222221 1223455566655321 2499999999999888
Q ss_pred eccCCCCCccccccccccccCCCcccccccCCCCcccccce
Q 043502 404 IPKYSGTSQENQFSGGWISHLHPPHARAARGAVGLPFQVGR 444 (949)
Q Consensus 404 ~~k~tg~~q~nq~~~~W~sh~~P~~ak~a~~~~g~pfq~gr 444 (949)
..+ .|.-.+.|+|++++-+..|.
T Consensus 768 ~~e------------------I~~~gR~a~GVk~i~L~~~D 790 (800)
T TIGR01063 768 VQD------------------VSEQGRNTQGVRLIRLDEDD 790 (800)
T ss_pred Hhh------------------CCccccCCCCeeeeeeCCCC
Confidence 722 45556677888777775543
No 31
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=84.67 E-value=38 Score=35.96 Aligned_cols=71 Identities=20% Similarity=0.269 Sum_probs=34.0
Q ss_pred cceeecCCcEEEEEecCC--ceeEeeccCCCccccCCCCCCCceeEEeeccccCCceEEEEccCC--ceeeeccCCc
Q 043502 231 SGVVSQDGERVYFCTKNG--LLLELSEVEPPRWLNHGRPPGANVAAIADAGNVRPEVVYTISSTG--DLYEYDRISK 303 (949)
Q Consensus 231 ~gvvs~dg~~lff~~knG--~LLe~tel~p~rW~~hg~PPga~VA~I~D~~~~R~~vVftiss~G--dLYeYnr~tk 303 (949)
+-.+|.||++|+|+...+ .-|-+-.++.-+-+.-...++...+.-.... -..++|+.+.+| +||.||-.++
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spD--g~~l~~~~~~~~~~~i~~~d~~~~ 268 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPD--GSKLAVSLSKDGNPDIYVMDLDGK 268 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCC--CCEEEEEECCCCCccEEEEECCCC
Confidence 335899999999987654 1222222221111111112222222111110 123666666655 5999987766
No 32
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.66 E-value=1.9 Score=54.52 Aligned_cols=77 Identities=22% Similarity=0.296 Sum_probs=58.0
Q ss_pred CceecCCCCCCcceEEEEecCCCeEEEEEeCCCCeEEe------------------------ecCCCCCCceeecCCCCc
Q 043502 755 GTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWDGWNWV------------------------EHGTPGKGVTLVGSPGPC 810 (949)
Q Consensus 755 GtAM~psk~sl~gslFm~~snG~LyEr~Wntg~gW~WV------------------------dHGtP~~gvtvv~spG~s 810 (949)
|..|..-+.+-.|++|+.+.||+|||-++...+||.=. .|+-|.+..+++++-+-.
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~Il 257 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNIL 257 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccccee
Confidence 45555545567799999999999999999999999866 444466667777777655
Q ss_pred ccC-----ceEEEEecCCceEEEEEe
Q 043502 811 LHG-----NQLLLIGSDGKVYLRYMD 831 (949)
Q Consensus 811 f~g-----sqLFviGSDG~LYeRywd 831 (949)
|.- -+.+++|+||-.=.|+..
T Consensus 258 Y~lsek~~v~~Y~i~~~G~~~~r~~~ 283 (1311)
T KOG1900|consen 258 YVLSEKGTVSAYDIGGNGLGGPRFVS 283 (1311)
T ss_pred eeeccCceEEEEEccCCCccceeeee
Confidence 552 378888888887777765
No 33
>PRK05560 DNA gyrase subunit A; Validated
Probab=84.51 E-value=11 Score=45.95 Aligned_cols=207 Identities=18% Similarity=0.258 Sum_probs=120.4
Q ss_pred EEe-ceeeehhccCceEEEecCCCCcceEEEeeccccccccccccccceeEeecceeecCCcEEEEEecCCceeEee--c
Q 043502 179 IVN-QRILALAEAGVLYQMQLGDNSQPIWVEFIPAIDQSINGEAEQRSVIQIKSGVVSQDGERVYFCTKNGLLLELS--E 255 (949)
Q Consensus 179 ivn-~tilalseag~lyqmql~e~sqpiw~ef~~~~~~~~~~~~~qs~~~~ik~gvvs~dg~~lff~~knG~LLe~t--e 255 (949)
|.+ ..++.||..|.+--+.+.+-..-- -....-+..+.++-. .++.-++.+...+|+|.|.+|+++-+. +
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~----~~~~g~~~~klKe~D---~l~~~~~~~t~d~LllfTs~Grv~~l~v~~ 567 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQR----RGGKGVSGAKTKEDD---FVEHLFVASTHDTLLFFTNRGRVYRLKVYE 567 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhc----ccCCCccccccCCCC---eeEEEEEecCCCeEEEEecCCeEEEEEhhh
Confidence 444 456788999988888665421100 000111111111111 233445667788899999999999996 6
Q ss_pred cCCCccccCCCC--------CCCceeEEeecccc-CCceEEEEccCCcee-----eeccCCchhhhhhcccccccccccc
Q 043502 256 VEPPRWLNHGRP--------PGANVAAIADAGNV-RPEVVYTISSTGDLY-----EYDRISKPSWRKHIWSKGTAANASL 321 (949)
Q Consensus 256 l~p~rW~~hg~P--------Pga~VA~I~D~~~~-R~~vVftiss~GdLY-----eYnr~tkpsW~kHiws~~l~~~~sl 321 (949)
+..-+|+.-|.| ||-+|..++-...+ ..+++++++++|-.- +|..... +-...-.+-.+-.+
T Consensus 568 iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r----~G~~~ikLke~D~l 643 (805)
T PRK05560 568 IPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRS----NGIIAINLDEGDEL 643 (805)
T ss_pred CcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhccc----CCceeeccCCCCEE
Confidence 999999988864 77888777766655 567999999999544 3332221 00111111111122
Q ss_pred ccCcccccccccCCceeeEEEEecCCcEEEEEeec-cceeEEEcCCC-----CCCcccccceeccCCccccceEEEEEcc
Q 043502 322 IPSMACTLHGLIGDHSTSLFLLTKGGNLVERRIQQ-RKWKWIIHGSP-----EDTHLTSITPVQQDESNEKFFSLFLTTS 395 (949)
Q Consensus 322 ~~s~g~t~~gl~g~~S~SLFlltk~G~LVErr~~q-rkWkWi~HGtP-----~~~~l~siT~v~~d~~~~~~~sLF~t~S 395 (949)
....-|. ..-.|+++|+.|.+.=...++ .-..+-.-|.+ .++.+.++.++-. +...++|+|.
T Consensus 644 v~v~~~~-------~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~-----~~~~il~vTk 711 (805)
T PRK05560 644 IGVRLTD-------GDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVRE-----DSQEILTVTE 711 (805)
T ss_pred EEEEEeC-------CCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcC-----CCcEEEEEEe
Confidence 2222121 123699999999998766664 33444334432 2234444444422 1124889999
Q ss_pred cceEEEEeeccCC
Q 043502 396 AGAVFEYQIPKYS 408 (949)
Q Consensus 396 ~G~Vyey~~~k~t 408 (949)
.|.+.+-.+..+.
T Consensus 712 ~G~iKr~~l~e~~ 724 (805)
T PRK05560 712 NGYGKRTPVSEYR 724 (805)
T ss_pred CCeEEEEEHHHhh
Confidence 9999999887765
No 34
>PLN02153 epithiospecifier protein
Probab=83.97 E-value=63 Score=34.35 Aligned_cols=137 Identities=12% Similarity=0.221 Sum_probs=69.0
Q ss_pred CCEEEEEec----CCCCCccccccc-cccceEEEecc---CcEE-------EEEecCCCceeeeccCCCCCceeecCCCC
Q 043502 594 ESVWLWLRH----DHSTPMRGVLGN-YNGSLYMVDLY---GSLL-------IRERSSNELAWINCTAMRKGRQVIGGPPW 658 (949)
Q Consensus 594 ~~~WlWl~H----~h~T~m~g~~g~-~ngsLf~vd~~---GsL~-------~R~~~g~~~~W~n~t~mr~G~~V~~G~pw 658 (949)
.+.|.-+.. ..|+|..+...+ ++++||+..-. |.+. +-..+-..-.|..-..|... ++-
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~------~~~ 183 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGEN------FEK 183 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCC------CCC
Confidence 467877653 126666665444 89999998543 2110 11122233356554332210 000
Q ss_pred CCCCCcceeecccCcEEEEec--------------CCeEeEEEEeceeeeeecC---CCCCCcceEEeecccccccCeEE
Q 043502 659 DGITGKAMKVTAEDALFFVSK--------------NGRLLQFTVALRKFKWKDC---RHPLDTKVACIVDQELFRENIVF 721 (949)
Q Consensus 659 dgipG~~~~vt~~dklF~vt~--------------~GrLlq~tva~rkwkW~dh---g~PPgTkIata~d~~~~r~~~iF 721 (949)
. -|..+ +..++++|++.- ...++.+- ...-+|..- |.+|-..-..+ ..++ +++||
T Consensus 184 r--~~~~~-~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd--~~~~~W~~~~~~g~~P~~r~~~~--~~~~-~~~iy 255 (341)
T PLN02153 184 R--GGAGF-AVVQGKIWVVYGFATSILPGGKSDYESNAVQFFD--PASGKWTEVETTGAKPSARSVFA--HAVV-GKYII 255 (341)
T ss_pred C--CcceE-EEECCeEEEEeccccccccCCccceecCceEEEE--cCCCcEEeccccCCCCCCcceee--eEEE-CCEEE
Confidence 0 11122 337888888631 12233333 333445432 33333332222 2344 46888
Q ss_pred EEccC-----------c----eEeeecCceeeeeecCC
Q 043502 722 VVGRN-----------G----RLYQYNKVTELWHEHYQ 744 (949)
Q Consensus 722 vvG~N-----------G----rLYEwNg~TW~WhdHGk 744 (949)
+.|.. + .||.|+-.+..|...+.
T Consensus 256 v~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 256 IFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred EECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 88773 1 57889999999998764
No 35
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process
Probab=81.51 E-value=4.7 Score=43.92 Aligned_cols=102 Identities=24% Similarity=0.380 Sum_probs=59.4
Q ss_pred ecccccccC---eEEEEccCceEeeecCceeeeeecCCCCceeeecCCCceecCCCCCCcceEEEEecCCCeEEEEEeCC
Q 043502 710 VDQELFREN---IVFVVGRNGRLYQYNKVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTW 786 (949)
Q Consensus 710 ~d~~~~r~~---~iFvvG~NGrLYEwNg~TW~WhdHGkP~~t~ls~~pGtAM~psk~sl~gslFm~~snG~LyEr~Wntg 786 (949)
+|+.++-|. -+|-.|-|||||+ +.+-|.++||.--.+ ..+-|-++...|||
T Consensus 134 iD~~vI~D~~n~yLFfa~DnGkiYR--------------s~~~i~nFP~~fgs~------~~vvmsd~~~nLFE------ 187 (271)
T PF03664_consen 134 IDQWVICDDTNMYLFFAGDNGKIYR--------------SSMPIGNFPGGFGSS------YTVVMSDTRNNLFE------ 187 (271)
T ss_pred eeeEEEecCCceEEEEcCCCCcEEE--------------eccchhhCCCCCCCc------eEEEEecCccceee------
Confidence 444444333 3899999999997 223344455432211 23667777788999
Q ss_pred CCeEEeecCCCCCCceeecCCCCcccCceEEEEecCCceEEEEEeCC-cceeeec----CCCCCCCcCc
Q 043502 787 DGWNWVEHGTPGKGVTLVGSPGPCLHGNQLLLIGSDGKVYLRYMDQM-TWRWKNC----GFPHKAKENS 850 (949)
Q Consensus 787 ~gW~WVdHGtP~~gvtvv~spG~sf~gsqLFviGSDG~LYeRywdg~-tWtW~Nh----G~P~~Gk~~~ 850 (949)
++.|.+..|..-+==-|=.+|+||+-||-|+..+ .-.|.-. -.|+||+.|.
T Consensus 188 -------------A~~VYkv~G~~~YLmiVEaiGs~gRyFRSfTa~sL~G~Wtp~A~tEsnPFAg~aNs 243 (271)
T PF03664_consen 188 -------------AVQVYKVKGQNQYLMIVEAIGSDGRYFRSFTATSLDGPWTPQAATESNPFAGKANS 243 (271)
T ss_pred -------------eeEEEEEcCCceEEEEEEEecCCCcEEEeeecCCCCCcceeccccccCCccccccC
Confidence 3555555552211012234799998888777744 3344433 4788888773
No 36
>PHA02713 hypothetical protein; Provisional
Probab=79.01 E-value=56 Score=38.02 Aligned_cols=184 Identities=11% Similarity=0.131 Sum_probs=100.6
Q ss_pred EEEEe-cCCEEEEEecCCCCCccc-cccccccceEEEecc-Cc----EEEEEecCCCceeeeccCCCCCceeecCCCCCC
Q 043502 588 FEYLY-AESVWLWLRHDHSTPMRG-VLGNYNGSLYMVDLY-GS----LLIRERSSNELAWINCTAMRKGRQVIGGPPWDG 660 (949)
Q Consensus 588 fE~~~-~~~~WlWl~H~h~T~m~g-~~g~~ngsLf~vd~~-Gs----L~~R~~~g~~~~W~n~t~mr~G~~V~~G~pwdg 660 (949)
.|.|. ..+.|.=+. .-|+|..+ +.++++|+||+++-. |. -.+++ .-..-.|.....|+..+.-
T Consensus 322 v~~Yd~~~n~W~~~~-~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Y-dp~~~~W~~~~~mp~~r~~-------- 391 (557)
T PHA02713 322 VYKINIENKIHVELP-PMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECY-TMGDDKWKMLPDMPIALSS-------- 391 (557)
T ss_pred EEEEECCCCeEeeCC-CCcchhhceeEEEECCEEEEECCcCCCCCCceEEEE-ECCCCeEEECCCCCccccc--------
Confidence 44444 445563221 11244433 344599999998753 22 13444 3334478888888766532
Q ss_pred CCCcceeecccCcEEEEec-CCe----------------------EeEEEEeceeeeeecCCCCCCcceEEeeccccccc
Q 043502 661 ITGKAMKVTAEDALFFVSK-NGR----------------------LLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRE 717 (949)
Q Consensus 661 ipG~~~~vt~~dklF~vt~-~Gr----------------------Llq~tva~rkwkW~dhg~PPgTkIata~d~~~~r~ 717 (949)
.++ ++.++++|++.- ++. -.+. .....=+|......+-..... ..+.++
T Consensus 392 -~~~---~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~-YDP~td~W~~v~~m~~~r~~~--~~~~~~- 463 (557)
T PHA02713 392 -YGM---CVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIR-YDTVNNIWETLPNFWTGTIRP--GVVSHK- 463 (557)
T ss_pred -ccE---EEECCEEEEEeCCCcccccccccccccccccccccccceEEE-ECCCCCeEeecCCCCcccccC--cEEEEC-
Confidence 122 346899998752 211 1111 233344565554433333322 234554
Q ss_pred CeEEEEcc-Cc------eEeeecCce-eeeeecCCCCceeeecCCCceecCCCCCCcceEEEEecCCC--eEEEEEeCCC
Q 043502 718 NIVFVVGR-NG------RLYQYNKVT-ELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDGG--LVEYHWNTWD 787 (949)
Q Consensus 718 ~~iFvvG~-NG------rLYEwNg~T-W~WhdHGkP~~t~ls~~pGtAM~psk~sl~gslFm~~snG~--LyEr~Wntg~ 787 (949)
++|||+|. ++ ..+.|+-.+ ..|.....-+.-.. .-|+|+. .+++|+++..-+ .+|+|=-.-.
T Consensus 464 ~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~--~~~~~~~------~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 464 DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS--ALHTILH------DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc--cceeEEE------CCEEEEEeeecceeehhhcCcccc
Confidence 47888764 32 134599888 68988764443322 1344444 356999987444 7888877777
Q ss_pred CeEEeecCCC
Q 043502 788 GWNWVEHGTP 797 (949)
Q Consensus 788 gW~WVdHGtP 797 (949)
.|+=+.|-..
T Consensus 536 ~W~~~~~~~~ 545 (557)
T PHA02713 536 EWNHICHQHS 545 (557)
T ss_pred cccchhhhcC
Confidence 8886665543
No 37
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=78.74 E-value=1.8e+02 Score=36.06 Aligned_cols=134 Identities=11% Similarity=0.171 Sum_probs=79.0
Q ss_pred CccccccccccceEEEeccCcEEEEEecCCCceeeeccCCCCCceeec----C-CCCCCCCCc------ceeecccCcEE
Q 043502 607 PMRGVLGNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIG----G-PPWDGITGK------AMKVTAEDALF 675 (949)
Q Consensus 607 ~m~g~~g~~ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G~~V~~----G-~pwdgipG~------~~~vt~~dklF 675 (949)
....++-..++.||+.+.+|.|+-=.-..-...|.--...+....... | .=|++-.+. +.-+..++++|
T Consensus 185 ~~e~TPlvvgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~ 264 (764)
T TIGR03074 185 TFQATPLKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRII 264 (764)
T ss_pred ccccCCEEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEE
Confidence 345666668999999999999887777766788886654432110000 0 002221111 01123567999
Q ss_pred EEecCCeEeEEEEeceeeeeecCC------------CCCCcceEEeecccccccCeEEEEcc----------CceEeeec
Q 043502 676 FVSKNGRLLQFTVALRKFKWKDCR------------HPLDTKVACIVDQELFRENIVFVVGR----------NGRLYQYN 733 (949)
Q Consensus 676 ~vt~~GrLlq~tva~rkwkW~dhg------------~PPgTkIata~d~~~~r~~~iFvvG~----------NGrLYEwN 733 (949)
+.|.||||+-.--.+.+..|...- .|++.--.+. .+.+. +++|++.++ +|.|+-|+
T Consensus 265 ~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts-~P~V~-~g~VIvG~~v~d~~~~~~~~G~I~A~D 342 (764)
T TIGR03074 265 LPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTS-PPLVA-GTTVVIGGRVADNYSTDEPSGVIRAFD 342 (764)
T ss_pred EecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCccccccc-CCEEE-CCEEEEEecccccccccCCCcEEEEEE
Confidence 999999999988888888885311 1223211122 35566 447777654 68888854
Q ss_pred --Cceeeeeec
Q 043502 734 --KVTELWHEH 742 (949)
Q Consensus 734 --g~TW~WhdH 742 (949)
-+..+|.-|
T Consensus 343 a~TGkl~W~~~ 353 (764)
T TIGR03074 343 VNTGALVWAWD 353 (764)
T ss_pred CCCCcEeeEEe
Confidence 334445544
No 38
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=77.54 E-value=45 Score=41.93 Aligned_cols=154 Identities=16% Similarity=0.232 Sum_probs=80.6
Q ss_pred cEEEEEecCCceeEee--ccCCCccccCC-----CCCCCceeE--Eeec------------------------------c
Q 043502 239 ERVYFCTKNGLLLELS--EVEPPRWLNHG-----RPPGANVAA--IADA------------------------------G 279 (949)
Q Consensus 239 ~~lff~~knG~LLe~t--el~p~rW~~hg-----~PPga~VA~--I~D~------------------------------~ 279 (949)
..|++.|++|.+|.|. ++++..=.--| --+|-.|.+ +++. .
T Consensus 672 ~~Iil~Tk~G~airF~~~eVr~mGR~a~GVkgI~L~~~D~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 751 (957)
T PRK13979 672 KFIKIKTKKGLSFTVEEPELEPVDRNIIGYQLFDLLPNDSIKKVDFCDNYEYKEFYVNINKKGIIKISDKDNKSSISVFT 751 (957)
T ss_pred CEEEEEeCCCcEEEEEHHHCcccCCCCcCeeeEeeCCCCEEEEEEEEhhhhhcchhhhcccccceeecccccccccceee
Confidence 5699999999999999 47664211110 012333432 2221 1
Q ss_pred ccCCceEEEEccCCceeeeccCCchhhhhhccccccccccccccC-c---ccccccccC-CceeeEEEEecCC-----cE
Q 043502 280 NVRPEVVYTISSTGDLYEYDRISKPSWRKHIWSKGTAANASLIPS-M---ACTLHGLIG-DHSTSLFLLTKGG-----NL 349 (949)
Q Consensus 280 ~~R~~vVftiss~GdLYeYnr~tkpsW~kHiws~~l~~~~sl~~s-~---g~t~~gl~g-~~S~SLFlltk~G-----~L 349 (949)
+.. +-++.+.+.|++|.-.--.-|.|+ +.+...+..+.+. . =.++..+.- +....|+|+|+.| .|
T Consensus 752 ~T~-d~Ll~FTn~Gkvy~ikv~eIPe~~----~kG~~i~nll~~l~~~E~Ii~i~~~~~~~~~~~Ll~vTk~G~iKRt~l 826 (957)
T PRK13979 752 NSS-KNLLIFSDEGKVYKIPAFMLQNIK----NEGINISALTGDFEKDEKIIKIISIFEFEEDLSIYFFSKKGLVKKTLL 826 (957)
T ss_pred cCC-ceEEEEecCCeEEEEEeeeccccc----ccCcCHHHhhcccCCCCeEEEEEeecccCCCceEEEEecCCcEEEeEH
Confidence 122 345666777999987665556643 1111111111000 0 001111110 0112599999999 34
Q ss_pred EEEEeeccceeEEEcCCC-CCCcccccceeccCCccccceEEEEEcccceEEEEee
Q 043502 350 VERRIQQRKWKWIIHGSP-EDTHLTSITPVQQDESNEKFFSLFLTTSAGAVFEYQI 404 (949)
Q Consensus 350 VErr~~qrkWkWi~HGtP-~~~~l~siT~v~~d~~~~~~~sLF~t~S~G~Vyey~~ 404 (949)
-||+-.+++..=+ --- ..+.|-++.++.. .+ -.++++|+.|++.+|..
T Consensus 827 sef~~~rr~~~ai--kLke~~DeLV~v~~v~~--~~---~eIvL~T~~G~~iRf~~ 875 (957)
T PRK13979 827 NEFKGEGNSTQAY--KFKHKEDELVNVDIKEH--EE---KNILLITEKGMAIRFKS 875 (957)
T ss_pred HHhcccCCCeEEE--EecCCCCeEEEEEEecC--CC---CEEEEEECCCeEEEEEh
Confidence 4677766653222 222 2356666665531 11 35999999999999976
No 39
>PF03984 DUF346: Repeat of unknown function (DUF346) ; InterPro: IPR007132 This repeat was found as seven tandem copies in one protein. It is predicted to be composed of beta-strands. Thus it is likely that it forms a beta-propeller structure. It is found in association with BNR repeats, which also form a beta-propeller.
Probab=77.05 E-value=2.7 Score=34.45 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=16.5
Q ss_pred eEEEEecCCceEEEEEeC
Q 043502 815 QLLLIGSDGKVYLRYMDQ 832 (949)
Q Consensus 815 qLFviGSDG~LYeRywdg 832 (949)
-||.+++||.|+-|||+.
T Consensus 4 HVF~r~~dg~L~H~ww~~ 21 (40)
T PF03984_consen 4 HVFARGTDGTLHHWWWDS 21 (40)
T ss_pred eEEEECCCCCEEEEEECC
Confidence 489999999999999984
No 40
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=76.95 E-value=85 Score=31.45 Aligned_cols=141 Identities=16% Similarity=0.217 Sum_probs=67.0
Q ss_pred ccceEEEeccCcEEEEEecCCCceeeeccCCCCCceeecCCCCCCCCCcceeecccCcEEEEecCCeEeEEEEeceeeee
Q 043502 616 NGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFKW 695 (949)
Q Consensus 616 ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G~~V~~G~pwdgipG~~~~vt~~dklF~vt~~GrLlq~tva~rkwkW 695 (949)
+|+||.+|+.+.-+.|.-....-.-+ +.-+. ..|++.. ..++.+++....|..+. -...++++-
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~-----------~~~~~---~~G~~~~-~~~g~l~v~~~~~~~~~-d~~~g~~~~ 74 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEV-----------IDLPG---PNGMAFD-RPDGRLYVADSGGIAVV-DPDTGKVTV 74 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEE-----------EESSS---EEEEEEE-CTTSEEEEEETTCEEEE-ETTTTEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEE-----------EecCC---CceEEEE-ccCCEEEEEEcCceEEE-ecCCCcEEE
Confidence 57888888876655554433222211 11111 3555552 24677777777666544 222332222
Q ss_pred ecCCCCCCcceEEeecccccccCeEEEEccC---------ceEeeecCc---eeeeeecCCCCceeeecCCCceecCCCC
Q 043502 696 KDCRHPLDTKVACIVDQELFRENIVFVVGRN---------GRLYQYNKV---TELWHEHYQSQHLVLSILPGTAMRPPSA 763 (949)
Q Consensus 696 ~dhg~PPgTkIata~d~~~~r~~~iFvvG~N---------GrLYEwNg~---TW~WhdHGkP~~t~ls~~pGtAM~psk~ 763 (949)
.-.....+.+.....|.++-.++.+|++..+ |+||.++.. +..+..-..|.+. ++.|.
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi--------~~s~d-- 144 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGI--------AFSPD-- 144 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEE--------EEETT--
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccce--------EECCc--
Confidence 2211112224555556665556666666443 778884444 2223333334333 44442
Q ss_pred CCcceEEEEec-CCCeEEEEEe
Q 043502 764 SLTGSLFMLSE-DGGLVEYHWN 784 (949)
Q Consensus 764 sl~gslFm~~s-nG~LyEr~Wn 784 (949)
+..+|+..+ .+.+|.+-.+
T Consensus 145 --g~~lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 145 --GKTLYVADSFNGRIWRFDLD 164 (246)
T ss_dssp --SSEEEEEETTTTEEEEEEEE
T ss_pred --chheeecccccceeEEEecc
Confidence 124555544 4445555555
No 41
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=76.85 E-value=1e+02 Score=32.43 Aligned_cols=133 Identities=12% Similarity=0.164 Sum_probs=67.8
Q ss_pred EEEEecC-CCCCc-cccccccccceEEEeccC-----cEEEEE-ecCCCc--eeeeccCCCCCceeecCCCCCCCCCcce
Q 043502 597 WLWLRHD-HSTPM-RGVLGNYNGSLYMVDLYG-----SLLIRE-RSSNEL--AWINCTAMRKGRQVIGGPPWDGITGKAM 666 (949)
Q Consensus 597 WlWl~H~-h~T~m-~g~~g~~ngsLf~vd~~G-----sL~~R~-~~g~~~--~W~n~t~mr~G~~V~~G~pwdgipG~~~ 666 (949)
+.|.... .|.|. .++..++++.||++.-.. +-..++ -..+.| .|.....||..+. + ..++
T Consensus 51 ~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~---~------~~~~- 120 (323)
T TIGR03548 51 LKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFE---N------GSAC- 120 (323)
T ss_pred eeEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCcc---C------ceEE-
Confidence 3466554 34555 355666899999986421 122232 223333 3555555554332 1 1222
Q ss_pred eecccCcEEEEec--CCeEeE--EEEeceeeeeecCCCCCCcceEEeecccccccCeEEEEc-cCce----EeeecCcee
Q 043502 667 KVTAEDALFFVSK--NGRLLQ--FTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVG-RNGR----LYQYNKVTE 737 (949)
Q Consensus 667 ~vt~~dklF~vt~--~GrLlq--~tva~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG-~NGr----LYEwNg~TW 737 (949)
..++++|+..- ++..+. ....+..-+|...-.-|+..-..+ ..... +++|||.| +++. ++.|+-.+.
T Consensus 121 --~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~-~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 121 --YKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQP-VCVKL-QNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred --EECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcc-eEEEE-CCEEEEEcCCCCccccceEEEecCCC
Confidence 36789998753 222222 122455667776653233222111 11234 45777766 4444 345888888
Q ss_pred eeeecC
Q 043502 738 LWHEHY 743 (949)
Q Consensus 738 ~WhdHG 743 (949)
.|..--
T Consensus 197 ~W~~~~ 202 (323)
T TIGR03548 197 QWQKVA 202 (323)
T ss_pred eeEECC
Confidence 887643
No 42
>PHA02790 Kelch-like protein; Provisional
Probab=75.29 E-value=1.1e+02 Score=34.87 Aligned_cols=174 Identities=16% Similarity=0.224 Sum_probs=92.6
Q ss_pred cccceEEEeccC-----cEEEEEecCCCceeeeccCCCCCceeecCCCCCCCCCcceeecccCcEEEEecCC--eEeEEE
Q 043502 615 YNGSLYMVDLYG-----SLLIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSKNG--RLLQFT 687 (949)
Q Consensus 615 ~ngsLf~vd~~G-----sL~~R~~~g~~~~W~n~t~mr~G~~V~~G~pwdgipG~~~~vt~~dklF~vt~~G--rLlq~t 687 (949)
.++.||+++-.. +-..|+ +-..-.|.-.+.|+..+.-. + -|+.++++|++.-.. .-.+.+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Y-dp~~~~W~~~~~m~~~r~~~---------~---~v~~~~~iYviGG~~~~~sve~y 336 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAV-NYISNNWIPIPPMNSPRLYA---------S---GVPANNKLYVVGGLPNPTSVERW 336 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEE-ECCCCEEEECCCCCchhhcc---------e---EEEECCEEEEECCcCCCCceEEE
Confidence 667788776421 112233 33345688888887544321 1 145789999987531 112322
Q ss_pred EeceeeeeecCCCCCCcceEEeecccccccCeEEEEcc-Cce--Eee-ecCceeeeeecCCCCceeeecCCCceecCCCC
Q 043502 688 VALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGR-NGR--LYQ-YNKVTELWHEHYQSQHLVLSILPGTAMRPPSA 763 (949)
Q Consensus 688 va~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~-NGr--LYE-wNg~TW~WhdHGkP~~t~ls~~pGtAM~psk~ 763 (949)
....-+|...-..|-..-.. ..+.. +++|||+|. ++. .-| |+-.+..|..--.++... .+.+++
T Consensus 337 -dp~~n~W~~~~~l~~~r~~~--~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r----~~~~~~---- 404 (480)
T PHA02790 337 -FHGDAAWVNMPSLLKPRCNP--AVASI-NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH----YKSCAL---- 404 (480)
T ss_pred -ECCCCeEEECCCCCCCCccc--EEEEE-CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc----ccceEE----
Confidence 34455676654433222222 23345 568888765 332 223 888888887633222221 112222
Q ss_pred CCcceEEEEecCCCeEEEEEeCCCCeEEeecCCCCCCceeecCCCCcccCceEEEEec
Q 043502 764 SLTGSLFMLSEDGGLVEYHWNTWDGWNWVEHGTPGKGVTLVGSPGPCLHGNQLLLIGS 821 (949)
Q Consensus 764 sl~gslFm~~snG~LyEr~Wntg~gW~WVdHGtP~~gvtvv~spG~sf~gsqLFviGS 821 (949)
.+.+++|+.|. ..|+|=-..+.|.-+. |.. .. -...|.+..++++||+|+
T Consensus 405 ~~~~~IYv~GG---~~e~ydp~~~~W~~~~---~m~-~~-r~~~~~~v~~~~IYviGG 454 (480)
T PHA02790 405 VFGRRLFLVGR---NAEFYCESSNTWTLID---DPI-YP-RDNPELIIVDNKLLLIGG 454 (480)
T ss_pred EECCEEEEECC---ceEEecCCCCcEeEcC---CCC-CC-ccccEEEEECCEEEEECC
Confidence 24578999873 4677633344666443 221 11 123455677899999997
No 43
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=73.98 E-value=1.1e+02 Score=36.23 Aligned_cols=219 Identities=22% Similarity=0.307 Sum_probs=124.5
Q ss_pred EEEEEecCCCCCccccccccccceEEEeccCc------EEEEEecCCCceeeeccCCCCCceeecCCCCCCCCCcceeec
Q 043502 596 VWLWLRHDHSTPMRGVLGNYNGSLYMVDLYGS------LLIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAMKVT 669 (949)
Q Consensus 596 ~WlWl~H~h~T~m~g~~g~~ngsLf~vd~~Gs------L~~R~~~g~~~~W~n~t~mr~G~~V~~G~pwdgipG~~~~vt 669 (949)
.|..+..=..-...-+.+..+|.||+++-+-+ -.+|+=.- .-.|.....|...|-=++ . ++
T Consensus 312 ~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~-~~~W~~~a~M~~~R~~~~---------v---~~ 378 (571)
T KOG4441|consen 312 EWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPR-TNQWTPVAPMNTKRSDFG---------V---AV 378 (571)
T ss_pred cEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCC-CCceeccCCccCccccce---------e---EE
Confidence 47666654433333344448888888875552 23343322 223999888877664221 1 34
Q ss_pred ccCcEEEEe-cCCeEeEEEE---eceeeeeecCCCCCCcceEEeecccccccCeEEEEcc-Cce------EeeecCceee
Q 043502 670 AEDALFFVS-KNGRLLQFTV---ALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGR-NGR------LYQYNKVTEL 738 (949)
Q Consensus 670 ~~dklF~vt-~~GrLlq~tv---a~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~-NGr------LYEwNg~TW~ 738 (949)
.++++|+|. .||.-.--++ ....-+|.-.+..+- .. ...+...+++ +||++|. +|- +..|+-.|-.
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r-~~~gv~~~~g-~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RR-SGHGVAVLGG-KLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ce-eeeEEEEECC-EEEEEcCcCCCccccceEEEEcCCCCc
Confidence 788888775 3444333222 556667777775533 22 2223446644 7777665 443 2339999999
Q ss_pred eeecCCCCceeeecCCCceecCCCCCCcceEEEEecCCC---e--EEEEEeCCCCeEEeecCCCCCCceeecCCCCcccC
Q 043502 739 WHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDGG---L--VEYHWNTWDGWNWVEHGTPGKGVTLVGSPGPCLHG 813 (949)
Q Consensus 739 WhdHGkP~~t~ls~~pGtAM~psk~sl~gslFm~~snG~---L--yEr~Wntg~gW~WVdHGtP~~gvtvv~spG~sf~g 813 (949)
|+. .|+-..--..-|+|.. .+.||+.+..-+ | +|+|=-....|.=+ .|. ..-....|-+-.+
T Consensus 456 W~~--~~~M~~~R~~~g~a~~------~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v---~~m--~~~rs~~g~~~~~ 522 (571)
T KOG4441|consen 456 WTL--IAPMNTRRSGFGVAVL------NGKIYVVGGFDGTSALSSVERYDPETNQWTMV---APM--TSPRSAVGVVVLG 522 (571)
T ss_pred eee--cCCcccccccceEEEE------CCEEEEECCccCCCccceEEEEcCCCCceeEc---ccC--ccccccccEEEEC
Confidence 976 3333222222233433 456888776332 3 89998888899966 322 1112344445678
Q ss_pred ceEEEEec-CCceEEEE---EeCCcceeeecCCC
Q 043502 814 NQLLLIGS-DGKVYLRY---MDQMTWRWKNCGFP 843 (949)
Q Consensus 814 sqLFviGS-DG~LYeRy---wdg~tWtW~NhG~P 843 (949)
++||++|. ||+-|.-. +|.-+-+|.....|
T Consensus 523 ~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~ 556 (571)
T KOG4441|consen 523 GKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEP 556 (571)
T ss_pred CEEEEEecccCccccceeEEcCCCCCceeeCCCc
Confidence 99999975 56665543 34556777766655
No 44
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=73.76 E-value=1.4e+02 Score=32.52 Aligned_cols=86 Identities=19% Similarity=0.344 Sum_probs=41.2
Q ss_pred EeeecCceeeeeecCCCCceeeecCCCceecCCCCCCcceEEEEecC---C----CeEEEEEeCCCCeEEeecCC-CCC-
Q 043502 729 LYQYNKVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSED---G----GLVEYHWNTWDGWNWVEHGT-PGK- 799 (949)
Q Consensus 729 LYEwNg~TW~WhdHGkP~~t~ls~~pGtAM~psk~sl~gslFm~~sn---G----~LyEr~Wntg~gW~WVdHGt-P~~- 799 (949)
++.|+-.+-.|..=+..+.. ...+.+++. ...+||+.+.. | .+|..-.+ -....|...-. |..
T Consensus 191 v~~YD~~t~~W~~~~~~p~~---~~~~~a~v~----~~~~iYv~GG~~~~~~~~~~~~~~~~~-~~~~~W~~~~~~p~~~ 262 (376)
T PRK14131 191 VLSYDPSTNQWKNAGESPFL---GTAGSAVVI----KGNKLWLINGEIKPGLRTDAVKQGKFT-GNNLKWQKLPDLPPAP 262 (376)
T ss_pred EEEEECCCCeeeECCcCCCC---CCCcceEEE----ECCEEEEEeeeECCCcCChhheEEEec-CCCcceeecCCCCCCC
Confidence 66699999999875533321 112333332 23457776631 1 12332233 23445654431 210
Q ss_pred -Ccee--ecCCCCcccCceEEEEecC
Q 043502 800 -GVTL--VGSPGPCLHGNQLLLIGSD 822 (949)
Q Consensus 800 -gvtv--v~spG~sf~gsqLFviGSD 822 (949)
+..- .....++..+++||++|+-
T Consensus 263 ~~~~~~~~~~~~a~~~~~~iyv~GG~ 288 (376)
T PRK14131 263 GGSSQEGVAGAFAGYSNGVLLVAGGA 288 (376)
T ss_pred cCCcCCccceEeceeECCEEEEeecc
Confidence 0000 0011134567899999974
No 45
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=72.49 E-value=26 Score=40.55 Aligned_cols=125 Identities=19% Similarity=0.297 Sum_probs=75.9
Q ss_pred EEEEEEeceeeehhccCceEEEecCCCCcceEEEeecccccccccccccc-ceeEeecceeecCCcEEEEEecCCceeEe
Q 043502 175 ISVFIVNQRILALAEAGVLYQMQLGDNSQPIWVEFIPAIDQSINGEAEQR-SVIQIKSGVVSQDGERVYFCTKNGLLLEL 253 (949)
Q Consensus 175 i~vfivn~tilalseag~lyqmql~e~sqpiw~ef~~~~~~~~~~~~~qs-~~~~ik~gvvs~dg~~lff~~knG~LLe~ 253 (949)
-+..|+|.+|..-+..|.||-+.+ ++-+.+|.- .+...... ... ..-.+..|++-+ +.+|||.+.+|+|+-|
T Consensus 63 stPvv~~g~vyv~s~~g~v~AlDa-~TGk~lW~~-~~~~~~~~----~~~~~~~~~~rg~av~-~~~v~v~t~dg~l~AL 135 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYSRVYALDA-KTGKELWKY-DPKLPDDV----IPVMCCDVVNRGVALY-DGKVFFGTLDARLVAL 135 (527)
T ss_pred cCCEEECCEEEEECCCCcEEEEEC-CCCceeeEe-cCCCCccc----ccccccccccccceEE-CCEEEEEcCCCEEEEE
Confidence 344567888888888899999874 456889963 22222111 000 011345665444 4579999999999999
Q ss_pred e-ccCCCccccCCC--CCCCceeEEeeccccCCceEEEEcc------CCceeeeccCCc-hhhhhh
Q 043502 254 S-EVEPPRWLNHGR--PPGANVAAIADAGNVRPEVVYTISS------TGDLYEYDRISK-PSWRKH 309 (949)
Q Consensus 254 t-el~p~rW~~hg~--PPga~VA~I~D~~~~R~~vVftiss------~GdLYeYnr~tk-psW~kH 309 (949)
. +--+..|+.--. +.+.. +.-+-.+=.+.||+-++ .|.||-||..|- .+|+-+
T Consensus 136 Da~TGk~~W~~~~~~~~~~~~---~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 136 DAKTGKVVWSKKNGDYKAGYT---ITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ECCCCCEEeeccccccccccc---ccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 8 578999975321 11111 22222222456776543 689999999885 344433
No 46
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=71.51 E-value=11 Score=41.58 Aligned_cols=118 Identities=27% Similarity=0.341 Sum_probs=66.7
Q ss_pred cceeecCCcEEEEEe-cCCceeEee--ccCCCccccCCCC----CCCceeEEeeccccCCceEEEEccCCceeeeccCC-
Q 043502 231 SGVVSQDGERVYFCT-KNGLLLELS--EVEPPRWLNHGRP----PGANVAAIADAGNVRPEVVYTISSTGDLYEYDRIS- 302 (949)
Q Consensus 231 ~gvvs~dg~~lff~~-knG~LLe~t--el~p~rW~~hg~P----Pga~VA~I~D~~~~R~~vVftiss~GdLYeYnr~t- 302 (949)
+-.+|.||++||..+ ..+.+.-+. .|++.+-..-+.- +..+|++|+++ -.|+.-|+++-.+|++...|-..
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s-~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS-PGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE--SSSSEEEEEETTTTEEEEEETTTS
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEec-CCCCEEEEEEccCCeEEEEEeccc
Confidence 446899999999887 456655554 4888887654432 55789999984 56889999999999998776332
Q ss_pred chhhhhhccccccccccccccCcccccccccCCceeeEEEEecCCcEE
Q 043502 303 KPSWRKHIWSKGTAANASLIPSMACTLHGLIGDHSTSLFLLTKGGNLV 350 (949)
Q Consensus 303 kpsW~kHiws~~l~~~~sl~~s~g~t~~gl~g~~S~SLFlltk~G~LV 350 (949)
+|+.-+-+-......+.-..+.-+.-+.++.+++-+++.= ++.+++|
T Consensus 161 ~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD-~~~~k~v 207 (369)
T PF02239_consen 161 KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVID-TKTGKLV 207 (369)
T ss_dssp SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEE-TTTTEEE
T ss_pred cccceeeecccccccccccCcccceeeecccccceeEEEe-eccceEE
Confidence 4444445544444445555555555555555555444332 3344443
No 47
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=67.53 E-value=67 Score=32.17 Aligned_cols=141 Identities=17% Similarity=0.246 Sum_probs=72.5
Q ss_pred eehhccCceEEEecCCCCcc-----eEEEeeccccccccccccccceeEeecce-eecCCcEEEEEe-cCCceeEee-cc
Q 043502 185 LALAEAGVLYQMQLGDNSQP-----IWVEFIPAIDQSINGEAEQRSVIQIKSGV-VSQDGERVYFCT-KNGLLLELS-EV 256 (949)
Q Consensus 185 lalseag~lyqmql~e~sqp-----iw~ef~~~~~~~~~~~~~qs~~~~ik~gv-vs~dg~~lff~~-knG~LLe~t-el 256 (949)
+|....|.||-=........ --..+.+. .+.+. --..+.+-||+ +|.||+.||+++ .+++++.|. ..
T Consensus 91 ~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~----~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~ 165 (246)
T PF08450_consen 91 VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV----VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA 165 (246)
T ss_dssp EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE----EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE----EecCcccccceEECCcchheeecccccceeEEEeccc
Confidence 56677888886543332211 12234444 11111 12236667887 699999999875 677788877 33
Q ss_pred CCCc------cccCCCCCCCceeEEeeccccCCceEEEEccCCceeeeccCCchhhhhhccccccccccccccCcccccc
Q 043502 257 EPPR------WLNHGRPPGANVAAIADAGNVRPEVVYTISSTGDLYEYDRISKPSWRKHIWSKGTAANASLIPSMACTLH 330 (949)
Q Consensus 257 ~p~r------W~~hg~PPga~VA~I~D~~~~R~~vVftiss~GdLYeYnr~tkpsW~kHiws~~l~~~~sl~~s~g~t~~ 330 (949)
+..+ +.+-...+|.==..-+|++- ++.-+.-.+|+++.||..-+. +.....|...+|..
T Consensus 166 ~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G---~l~va~~~~~~I~~~~p~G~~------------~~~i~~p~~~~t~~ 230 (246)
T PF08450_consen 166 DGGELSNRRVFIDFPGGPGYPDGLAVDSDG---NLWVADWGGGRIVVFDPDGKL------------LREIELPVPRPTNC 230 (246)
T ss_dssp TTCCEEEEEEEEE-SSSSCEEEEEEEBTTS----EEEEEETTTEEEEEETTSCE------------EEEEE-SSSSEEEE
T ss_pred cccceeeeeeEEEcCCCCcCCCcceEcCCC---CEEEEEcCCCEEEEECCCccE------------EEEEcCCCCCEEEE
Confidence 3332 22222221112233456532 344444478999999987651 11111222245555
Q ss_pred cccCCceeeEEEEec
Q 043502 331 GLIGDHSTSLFLLTK 345 (949)
Q Consensus 331 gl~g~~S~SLFlltk 345 (949)
-+-|..---||+-|-
T Consensus 231 ~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 231 AFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEESTTSSEEEEEEB
T ss_pred EEECCCCCEEEEEeC
Confidence 555666668888763
No 48
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=67.29 E-value=26 Score=39.87 Aligned_cols=76 Identities=13% Similarity=0.131 Sum_probs=42.4
Q ss_pred CcccccccccCCceeeEEEEecCCcEEEEEeeccceeEEEcCCCCCCcccccceeccCCccc---cceEEEEEcccceEE
Q 043502 324 SMACTLHGLIGDHSTSLFLLTKGGNLVERRIQQRKWKWIIHGSPEDTHLTSITPVQQDESNE---KFFSLFLTTSAGAVF 400 (949)
Q Consensus 324 s~g~t~~gl~g~~S~SLFlltk~G~LVErr~~qrkWkWi~HGtP~~~~l~siT~v~~d~~~~---~~~sLF~t~S~G~Vy 400 (949)
.+|-.+.-...+.....|+..|+|.+..|+|...+ -|.+....++......|.|.|- +--.||+---+--|+
T Consensus 158 ~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~-----~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~GIW 232 (381)
T PF02333_consen 158 PYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDG-----DGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDVGIW 232 (381)
T ss_dssp EEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-T-----TSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTTEEE
T ss_pred ceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCC-----CCcEeeEEEEEecCCCcceEEEEecccCCEEEecCccEEE
Confidence 45655543333346788999999999999997322 2333334556666666777763 223455555555555
Q ss_pred EEee
Q 043502 401 EYQI 404 (949)
Q Consensus 401 ey~~ 404 (949)
.|..
T Consensus 233 ~y~A 236 (381)
T PF02333_consen 233 RYDA 236 (381)
T ss_dssp EEES
T ss_pred EEec
Confidence 5554
No 49
>PRK02889 tolB translocation protein TolB; Provisional
Probab=66.53 E-value=1.6e+02 Score=32.62 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=13.3
Q ss_pred ecceeecCCcEEEEEec
Q 043502 230 KSGVVSQDGERVYFCTK 246 (949)
Q Consensus 230 k~gvvs~dg~~lff~~k 246 (949)
-+-..|.||++|+|++.
T Consensus 199 ~~p~wSPDG~~la~~s~ 215 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSF 215 (427)
T ss_pred ccceEcCCCCEEEEEEc
Confidence 45578899999988764
No 50
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=65.24 E-value=87 Score=38.13 Aligned_cols=335 Identities=19% Similarity=0.251 Sum_probs=184.2
Q ss_pred EEEEeeccceeEEEcCCCCCCcccccceeccCCccccceEEEEEcccceEEEEeeccCCCCCccccccccccccCCCccc
Q 043502 350 VERRIQQRKWKWIIHGSPEDTHLTSITPVQQDESNEKFFSLFLTTSAGAVFEYQIPKYSGTSQENQFSGGWISHLHPPHA 429 (949)
Q Consensus 350 VErr~~qrkWkWi~HGtP~~~~l~siT~v~~d~~~~~~~sLF~t~S~G~Vyey~~~k~tg~~q~nq~~~~W~sh~~P~~a 429 (949)
+-++++.--=.|-|- -|.++-+++|- ...+.+|=+.++|+|+---.+-..- .++||. |.--
T Consensus 13 ~a~~~st~~~~W~e~-p~~g~~~~~i~--------a~p~fa~gl~gSg~v~~~v~~~~~~-iYeNqR---WlgI------ 73 (705)
T KOG3669|consen 13 SALAASTSHKPWLEQ-PPRGQTLTSID--------AEPIFAHGLPGSGSVTSVVELGPSC-IYENQR---WLGI------ 73 (705)
T ss_pred eEEEecCCcccceec-CCCCCceEecc--------ccceeeeccCCCCeeEEEEccCccc-eecccc---cccc------
Confidence 344454322246665 44444555442 2336688888888887643322111 134432 3210
Q ss_pred ccccCCCCcccccceEEEEeCCCceeecccCCCCCCCCCCCcccceeeeccceEEEeeeccCccCCCCcccccccCCCCc
Q 043502 430 RAARGAVGLPFQVGRTIFPLDDGRLAELHPSGLGGENSGPINQLSVRRKVSIKYVWSILDAPETEGWNAEYCTEERSPLN 509 (949)
Q Consensus 430 k~a~~~~g~pfq~grviF~L~DGRLaELhl~g~gg~~~gp~~q~~~rrk~s~ky~wsildapetegwnaeyc~ee~gp~n 509 (949)
.+ ++ -|-.||-.|-=-+||+- ..||. -+-+|.||.| |.+=|+-.+
T Consensus 74 ---eg-ag-lLptDR~r~Sda~Gsv~----------r~~~~-----~~l~S~~w~W---------------~~DWh~dl~ 118 (705)
T KOG3669|consen 74 ---EG-AG-LLPTDRFRESDAGGSVP----------RYGIL-----SLLVSEKWIW---------------CLDWHGDLF 118 (705)
T ss_pred ---cc-cc-cCCCcccccccCCCCcc----------ccccc-----ccccCccceE---------------ecccccCcc
Confidence 00 11 12345555555555531 12222 3456788877 444455556
Q ss_pred ccc--cccC-------CCCC-cCCchh---hhhccccccccceeeccCCCCCCCCCcccccCCCccccccceEEEE-ecC
Q 043502 510 CMA--GTKD-------EPND-LGITRT---ARRRKGSQAQYDYLFPSISGGRAQNPIEEYSLPDNWINNYFRLRVM-HGS 575 (949)
Q Consensus 510 c~~--g~k~-------~~~~-~g~~~~---~rrrk~sq~~~~yl~~~~~g~~~~~~~e~y~~~~~~i~~nf~~rvm-h~~ 575 (949)
|-. +.|+ -|.. .--.++ -|||+= +..+.|-..++-++...+. .--|-|--| -++.|| -++
T Consensus 119 ~~g~p~dkeGWQYalDFpA~y~A~k~~~~lVRRR~w-kr~~Ry~s~~~W~evs~~~--~r~f~e~ai---gg~cv~~~g~ 192 (705)
T KOG3669|consen 119 CSGLPGDKEGWQYALDFPAQYVAVKPSGALVRRRVW-KREQRYNSAFAWGEVSIKG--KRHFYEAAI---GGVCVAGLGD 192 (705)
T ss_pred CCCCCCcchhhhhhhhccchhhccCcHHHHHHHHHH-HHhhhhhccCchhhccchh--hhhhhhhcc---CcccccCCCc
Confidence 655 2332 1111 112222 244443 2456777777666554332 222333333 367888 667
Q ss_pred ceEEEEeeCCeeEEEEe------cCCEEEEEecCCC-CCccccccccccceEEEeccCcEEEEEe----cCCCceeeecc
Q 043502 576 RSFFLITDGGFTFEYLY------AESVWLWLRHDHS-TPMRGVLGNYNGSLYMVDLYGSLLIRER----SSNELAWINCT 644 (949)
Q Consensus 576 ~s~fliTd~G~~fE~~~------~~~~WlWl~H~h~-T~m~g~~g~~ngsLf~vd~~GsL~~R~~----~g~~~~W~n~t 644 (949)
--+|.|+.+|++|=|-= .+..| .|.-| |++.+....--|.|..|.-+|-++.|+= +-+.-.|.+--
T Consensus 193 ~~awAI~s~Gd~y~RtGvs~~~P~GraW---~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWkdI~ 269 (705)
T KOG3669|consen 193 DTAWAIRSSGDLYLRTGVSVDRPCGRAW---KVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWKDIV 269 (705)
T ss_pred eEEEEEecCCcEEEeccccCCCCCCcee---eecCCCCccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhhhcc
Confidence 78999999999985421 12222 23333 6777777777899999999999999984 22233343332
Q ss_pred CCCCCce-eecCCCCCCCCCcceeecccCcEEEEecCCeEeEEEEeceee--eeecCCCCCCcce-----EEeecccccc
Q 043502 645 AMRKGRQ-VIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKF--KWKDCRHPLDTKV-----ACIVDQELFR 716 (949)
Q Consensus 645 ~mr~G~~-V~~G~pwdgipG~~~~vt~~dklF~vt~~GrLlq~tva~rkw--kW~dhg~PPgTkI-----ata~d~~~~r 716 (949)
. |++.- ++ .+-|- -+.+.-+|.+|+||=++-.-+++ .=|+|=+|--.+. ..+-=+.+..
T Consensus 270 t-P~~a~~~v-----------~iSvG-t~t~Waldndg~lwfrrgii~~kpeg~h~~e~~~s~~~~v~tdq~isf~SV~~ 336 (705)
T KOG3669|consen 270 T-PRQALEPV-----------CISVG-TQTLWALDNDGNLWFRRGIISKKPEGDHDHEWQVSITDYVVTDQCISFQSVIH 336 (705)
T ss_pred C-cccccceE-----------EEEec-cceEEEEecCCcEEEEecccccCcccccccccccccccceEEecceeeEEEEe
Confidence 2 21111 11 12222 46789999999999887766654 2333444432232 2232233666
Q ss_pred cCeEEEEccCceEeeecCceee-----eeecCCCCceeeecCCCceecC
Q 043502 717 ENIVFVVGRNGRLYQYNKVTEL-----WHEHYQSQHLVLSILPGTAMRP 760 (949)
Q Consensus 717 ~~~iFvvG~NGrLYEwNg~TW~-----WhdHGkP~~t~ls~~pGtAM~p 760 (949)
..-+|.++.++++|.=.|+|.. |-+-++-++.+++...+..|-.
T Consensus 337 ndqVfaisa~~~i~~R~GVt~~~P~Gk~w~liqc~~~wisv~~sgv~i~ 385 (705)
T KOG3669|consen 337 NDQVFAISAQAKIEVREGVTDKLPMGKWWQLIQCQPSWISVNNSGVWIS 385 (705)
T ss_pred cceEEEEecccceeeeccccccCccccceeeeecCceeEeeecceEEEE
Confidence 7789999999999887776653 7777877767776655555544
No 51
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=64.76 E-value=1.1e+02 Score=36.15 Aligned_cols=192 Identities=18% Similarity=0.185 Sum_probs=103.6
Q ss_pred CCccccccccccceEEEe-ccCcEEEEEecCCCceeeeccCCCCCceeecCCCCCCCCCcceeecccCcE-EEEecCCeE
Q 043502 606 TPMRGVLGNYNGSLYMVD-LYGSLLIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAMKVTAEDAL-FFVSKNGRL 683 (949)
Q Consensus 606 T~m~g~~g~~ngsLf~vd-~~GsL~~R~~~g~~~~W~n~t~mr~G~~V~~G~pwdgipG~~~~vt~~dkl-F~vt~~GrL 683 (949)
-|+.--..+.+|.+.+.. +-|+|++=|-+.-.|.=+-..+-++=+- .|.+-||.. |-.++||++
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITc--------------L~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITC--------------LKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeE--------------EEEeCCCcEEEecCCCccE
Confidence 444444445777766666 9999999999888887766666555444 233445554 456899998
Q ss_pred eEEEE-----ec------eeeeeecCCCCCCcceEEeecccccccCeEEEEccCce--EeeecCceeeeeecCCCCceee
Q 043502 684 LQFTV-----AL------RKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGR--LYQYNKVTELWHEHYQSQHLVL 750 (949)
Q Consensus 684 lq~tv-----a~------rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~NGr--LYEwNg~TW~WhdHGkP~~t~l 750 (949)
+-+.+ +. ---.|++|..| =|-+..-.++ -+.++|.++-|-. ||.-..+ .==-+++
T Consensus 148 ~vW~l~~lv~a~~~~~~~p~~~f~~Htls-ITDl~ig~Gg---~~~rl~TaS~D~t~k~wdlS~g--------~LLlti~ 215 (476)
T KOG0646|consen 148 LVWLLTDLVSADNDHSVKPLHIFSDHTLS-ITDLQIGSGG---TNARLYTASEDRTIKLWDLSLG--------VLLLTIT 215 (476)
T ss_pred EEEEEEeecccccCCCccceeeeccCcce-eEEEEecCCC---ccceEEEecCCceEEEEEeccc--------eeeEEEe
Confidence 77544 11 22479999988 1222211111 1224444444432 3332221 0000111
Q ss_pred ecCC--CceecCCCCCCcceEEEEecCCCeEEEEEeCCCCeE-------EeecCCCCCCceeecCCC--------CcccC
Q 043502 751 SILP--GTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWDGWN-------WVEHGTPGKGVTLVGSPG--------PCLHG 813 (949)
Q Consensus 751 s~~p--GtAM~psk~sl~gslFm~~snG~LyEr~Wntg~gW~-------WVdHGtP~~gvtvv~spG--------~sf~g 813 (949)
.+.+ .+||-| -..++|+.+++|..|.-......|-+ -..||+-. -.+++-.+ -|++|
T Consensus 216 fp~si~av~lDp----ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~--~~~~Gh~~~~~ITcLais~Dg 289 (476)
T KOG0646|consen 216 FPSSIKAVALDP----AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQI--NVLVGHENESAITCLAISTDG 289 (476)
T ss_pred cCCcceeEEEcc----cccEEEecCCcceEEeeehhcCCccccccccccccccccee--eeeccccCCcceeEEEEecCc
Confidence 1112 233333 34689999999999986655444321 23455432 12222222 34566
Q ss_pred ceEEEEecCCceEEEEEe
Q 043502 814 NQLLLIGSDGKVYLRYMD 831 (949)
Q Consensus 814 sqLFviGSDG~LYeRywd 831 (949)
+.|.--+.||++ +.||
T Consensus 290 tlLlSGd~dg~V--cvWd 305 (476)
T KOG0646|consen 290 TLLLSGDEDGKV--CVWD 305 (476)
T ss_pred cEEEeeCCCCCE--EEEe
Confidence 666666678886 5677
No 52
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=64.41 E-value=91 Score=33.01 Aligned_cols=72 Identities=11% Similarity=0.287 Sum_probs=39.5
Q ss_pred cccCcEEEEecC--CeEeEEEEeceeeeeecCCCCCC-cceEEeecccccccCeEEEEccCc------------eEeeec
Q 043502 669 TAEDALFFVSKN--GRLLQFTVALRKFKWKDCRHPLD-TKVACIVDQELFRENIVFVVGRNG------------RLYQYN 733 (949)
Q Consensus 669 t~~dklF~vt~~--GrLlq~tva~rkwkW~dhg~PPg-TkIata~d~~~~r~~~iFvvG~NG------------rLYEwN 733 (949)
..+++||++.-. -+++.+-...+.-+|...-..|. .+...+ .... +++|||.|.-. .+|.|+
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~--~~~~-~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd 91 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAV--AAAI-DGKLYVFGGIGKANSEGSPQVFDDVYRYD 91 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccce--EEEE-CCEEEEEeCCCCCCCCCcceecccEEEEE
Confidence 367888886432 12222222234556776655443 222221 2234 56888887532 256688
Q ss_pred CceeeeeecC
Q 043502 734 KVTELWHEHY 743 (949)
Q Consensus 734 g~TW~WhdHG 743 (949)
-.+..|..--
T Consensus 92 ~~~~~W~~~~ 101 (346)
T TIGR03547 92 PKKNSWQKLD 101 (346)
T ss_pred CCCCEEecCC
Confidence 8888898753
No 53
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=64.38 E-value=2e+02 Score=30.54 Aligned_cols=109 Identities=8% Similarity=0.135 Sum_probs=54.8
Q ss_pred CCCCcccccc-ccccceEEEeccC-cEEEEEec-CCCceeeeccCCC-CCceeecCCCCCCCCCcceeecccCcEEEEec
Q 043502 604 HSTPMRGVLG-NYNGSLYMVDLYG-SLLIRERS-SNELAWINCTAMR-KGRQVIGGPPWDGITGKAMKVTAEDALFFVSK 679 (949)
Q Consensus 604 h~T~m~g~~g-~~ngsLf~vd~~G-sL~~R~~~-g~~~~W~n~t~mr-~G~~V~~G~pwdgipG~~~~vt~~dklF~vt~ 679 (949)
.|.|.+...+ ..+++||++.-.. +-+.+.-- ...-.|.....|+ ..|. + .++ |..+++||++.-
T Consensus 4 lp~~~~~~~~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~---~------~~~---~~~~~~iYv~GG 71 (346)
T TIGR03547 4 LPVGFKNGTGAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRN---Q------AVA---AAIDGKLYVFGG 71 (346)
T ss_pred CCccccCceEEEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcc---c------ceE---EEECCEEEEEeC
Confidence 4677774444 6899999975432 22222221 1234577777775 2221 1 223 347899999874
Q ss_pred CCe--------EeE--EEEeceeeeeecCCCCCCcceEEeecccccccCeEEEEcc
Q 043502 680 NGR--------LLQ--FTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGR 725 (949)
Q Consensus 680 ~Gr--------Llq--~tva~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~ 725 (949)
... .+. +......-+|...-.|.-.....+ .....-+++||++|.
T Consensus 72 ~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~-~~~~~~~g~IYviGG 126 (346)
T TIGR03547 72 IGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGA-SGFSLHNGQAYFTGG 126 (346)
T ss_pred CCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccce-eEEEEeCCEEEEEcC
Confidence 321 122 122566777877643211111111 112123567887764
No 54
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=60.16 E-value=1.4e+02 Score=33.91 Aligned_cols=237 Identities=19% Similarity=0.247 Sum_probs=131.4
Q ss_pred eEEEEecCceEEEEeeCCeeEEEEecCCEEE----EE-ecCCC----CCccccccccccceEEEeccCcEEEEEe-cCCC
Q 043502 568 RLRVMHGSRSFFLITDGGFTFEYLYAESVWL----WL-RHDHS----TPMRGVLGNYNGSLYMVDLYGSLLIRER-SSNE 637 (949)
Q Consensus 568 ~~rvmh~~~s~fliTd~G~~fE~~~~~~~Wl----Wl-~H~h~----T~m~g~~g~~ngsLf~vd~~GsL~~R~~-~g~~ 637 (949)
-+-+-|.+++.|+|-+.|+++|-==.+..|- .+ ||--. -.|+|.-=- +=+++.|-. .|..
T Consensus 47 ~ia~~~~g~~gwlVg~rgtiletdd~g~tw~qal~~~gr~~f~sv~f~~~egw~vG----------e~sqll~T~DgGqs 116 (339)
T COG4447 47 DIAFTESGSHGWLVGGRGTILETDDGGITWAQALDFLGRHAFHSVSFLGMEGWIVG----------EPSQLLHTTDGGQS 116 (339)
T ss_pred ceeEeecCcceEEEcCcceEEEecCCcccchhhhchhhhhheeeeeeecccccccC----------CcceEEEecCCCcc
Confidence 4556799999999999999998776666662 22 33211 223222100 112222222 1223
Q ss_pred ceeeeccCCCCCceeecCCCCCCCCCcceeec--ccCcEEEEecCCeEeEEEEeceeeeeecCCCCCCcceEEeeccccc
Q 043502 638 LAWINCTAMRKGRQVIGGPPWDGITGKAMKVT--AEDALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACIVDQELF 715 (949)
Q Consensus 638 ~~W~n~t~mr~G~~V~~G~pwdgipG~~~~vt--~~dklF~vt~~GrLlq~tva~rkwkW~dhg~PPgTkIata~d~~~~ 715 (949)
|+=|--.--+ ||...-++ -++.=+++++-|-+|.-+-.+.-|| +. .|-+...+....-+-.
T Consensus 117 WARi~~~e~~--------------eg~~~sI~f~d~q~g~m~gd~Gail~T~DgGk~Wk--~l-~e~~v~~~~~n~ia~s 179 (339)
T COG4447 117 WARIPLSEKL--------------EGFPDSITFLDDQRGEMLGDQGAILKTTDGGKNWK--AL-VEKAVGLAVPNEIARS 179 (339)
T ss_pred hhhchhhcCC--------------CCCcceeEEecchhhhhhcccceEEEecCCcccHh--Hh-cccccchhhhhhhhhh
Confidence 3322222212 23332222 2233355666666665554444333 32 2323333344334456
Q ss_pred ccCeEEEEccCceEee-ecCceeeeeecCCCCceeeecCCCceecCCCCCCcceEEEEecCCCeEEEEEeCCCCeEEeec
Q 043502 716 RENIVFVVGRNGRLYQ-YNKVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWDGWNWVEH 794 (949)
Q Consensus 716 r~~~iFvvG~NGrLYE-wNg~TW~WhdHGkP~~t~ls~~pGtAM~psk~sl~gslFm~~snG~LyEr~Wntg~gW~WVdH 794 (949)
.+|...++|.-|.+|. |.-++=.|..||.=++..+. .+|.|=.++| -+|.++--|+++- |. -.+=.|.|-
T Consensus 180 ~dng~vaVg~rGs~f~T~~aGqt~~~~~g~~s~~~le-tmg~adag~~-----g~la~g~qg~~f~--~~-~~gD~wsd~ 250 (339)
T COG4447 180 ADNGYVAVGARGSFFSTWGAGQTVWLPHGRNSSRRLE-TMGLADAGSK-----GLLARGGQGDQFS--WV-CGGDEWSDQ 250 (339)
T ss_pred ccCCeEEEecCcceEecCCCCccEEeccCCCccchhc-ccccccCCcc-----ceEEEccccceee--cC-CCccccccc
Confidence 7899999999999999 65555589999966665444 6888888765 3788888888775 33 445567788
Q ss_pred CCCCCCceeecCCCCc-cc---CceEEEEecCCceEEEEEeCCcceeeecCCC
Q 043502 795 GTPGKGVTLVGSPGPC-LH---GNQLLLIGSDGKVYLRYMDQMTWRWKNCGFP 843 (949)
Q Consensus 795 GtP~~gvtvv~spG~s-f~---gsqLFviGSDG~LYeRywdg~tWtW~NhG~P 843 (949)
+.|-.-. .-++|-. |. ...++|.|--|+|-+----+.+|. ++-|.|
T Consensus 251 ~~~~~~g--~~~~Gl~d~a~~a~~~v~v~G~gGnvl~StdgG~t~s-kd~g~~ 300 (339)
T COG4447 251 GEPVNLG--RRSWGLLDFAPRAPPEVWVSGIGGNVLASTDGGTTWS-KDGGVE 300 (339)
T ss_pred ccchhcc--cCCCccccccccCCCCeEEeccCccEEEecCCCeeEe-ccCChh
Confidence 8774211 0123311 11 468888888888876543344443 244444
No 55
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=59.62 E-value=85 Score=38.46 Aligned_cols=150 Identities=17% Similarity=0.221 Sum_probs=80.5
Q ss_pred CcEEEEEecCCceeEee--ccCCCccccCCCCCCCceeEEeeccccCCceEEEEccCCceeeeccCCchhhhhhcccccc
Q 043502 238 GERVYFCTKNGLLLELS--EVEPPRWLNHGRPPGANVAAIADAGNVRPEVVYTISSTGDLYEYDRISKPSWRKHIWSKGT 315 (949)
Q Consensus 238 g~~lff~~knG~LLe~t--el~p~rW~~hg~PPga~VA~I~D~~~~R~~vVftiss~GdLYeYnr~tkpsW~kHiws~~l 315 (949)
-..+.++|++|.+-.+. +.+.- --.--.|-.|..+.-..+ . +-|+.++++|++|.|.-..=|. -+ +.+.
T Consensus 507 e~~lVllTk~GyIKR~~l~~f~~~---aikLke~D~Lv~v~~~~t-~-d~LllfT~~Grv~r~~~~eIP~-gr---a~Gv 577 (742)
T PRK05561 507 EPVTVVLSKKGWVRRAKGHSIDAS---GLSFKEGDSLLFAFEART-T-DKLLLFTSTGRVYSLPVHELPS-AR---GDGE 577 (742)
T ss_pred cceEEEEecCCEEEeccchhhhhh---ccccCCCCeEEEEEEecC-C-CeEEEEECCCcEEEeEHHhCCC-cC---CCCc
Confidence 44689999999876554 33321 111112333433333322 2 3477788899999997654444 33 2222
Q ss_pred ccccccccCcccccccccC-CceeeEEEEecCC-----cEEEEEeecc-ceeEEEcCCCCCCcccccceeccCCccccce
Q 043502 316 AANASLIPSMACTLHGLIG-DHSTSLFLLTKGG-----NLVERRIQQR-KWKWIIHGSPEDTHLTSITPVQQDESNEKFF 388 (949)
Q Consensus 316 ~~~~sl~~s~g~t~~gl~g-~~S~SLFlltk~G-----~LVErr~~qr-kWkWi~HGtP~~~~l~siT~v~~d~~~~~~~ 388 (949)
..+..+.-.-+=.+.+..- +....|+|+|+.| .|-|++...| +-.=+.- .+.+.|-++.++..+ -
T Consensus 578 ~i~~~i~L~~gE~Iv~~~~~~~~~~lllvT~~G~~KRt~lse~~~~~R~gkg~i~L--k~~D~Lv~a~~v~~~------d 649 (742)
T PRK05561 578 PLTGLVDLAPGEEIVHVLAFDPDQKLLLASSAGYGFVVTLEDLVARTRAGKAVINL--KDGDEVLPPVPVEDD------D 649 (742)
T ss_pred ChhhhcCCCCCceEEEEEEEcCCcEEEEEECCCcEEEEEhhhccccCCCCeEEEEe--CCCCEEEEEEEeCCC------C
Confidence 1111110000100000000 1112589999999 6777777744 4333333 255666666665321 2
Q ss_pred EEEEEcccceEEEEee
Q 043502 389 SLFLTTSAGAVFEYQI 404 (949)
Q Consensus 389 sLF~t~S~G~Vyey~~ 404 (949)
.++++|++|++.++..
T Consensus 650 ~I~liT~~G~~irf~~ 665 (742)
T PRK05561 650 HLAAITSNGRLLVFPL 665 (742)
T ss_pred EEEEEeCCCcEEEEEH
Confidence 4999999999999987
No 56
>PRK03629 tolB translocation protein TolB; Provisional
Probab=59.06 E-value=1.3e+02 Score=33.57 Aligned_cols=22 Identities=9% Similarity=-0.019 Sum_probs=14.0
Q ss_pred ccccceEEEEEcccceEEEEee
Q 043502 383 SNEKFFSLFLTTSAGAVFEYQI 404 (949)
Q Consensus 383 ~~~~~~sLF~t~S~G~Vyey~~ 404 (949)
-..+|..|++++.+|.....++
T Consensus 381 ~SpDG~~i~~~s~~~~~~~l~~ 402 (429)
T PRK03629 381 IAPNGTMVIYSSSQGMGSVLNL 402 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEE
Confidence 3445677888888876544333
No 57
>PF03984 DUF346: Repeat of unknown function (DUF346) ; InterPro: IPR007132 This repeat was found as seven tandem copies in one protein. It is predicted to be composed of beta-strands. Thus it is likely that it forms a beta-propeller structure. It is found in association with BNR repeats, which also form a beta-propeller.
Probab=58.89 E-value=16 Score=30.20 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=19.6
Q ss_pred EEEEecCCCeEEEEEeCCCCeE
Q 043502 769 LFMLSEDGGLVEYHWNTWDGWN 790 (949)
Q Consensus 769 lFm~~snG~LyEr~Wntg~gW~ 790 (949)
+|.+++||.|+-++|+...++.
T Consensus 5 VF~r~~dg~L~H~ww~~~~~~~ 26 (40)
T PF03984_consen 5 VFARGTDGTLHHWWWDSTGGPS 26 (40)
T ss_pred EEEECCCCCEEEEEECCCCCCc
Confidence 8999999999999999676765
No 58
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=57.65 E-value=2.5e+02 Score=34.78 Aligned_cols=167 Identities=12% Similarity=0.075 Sum_probs=91.6
Q ss_pred cCceEEEEeeCCeeEEEEecCCEEEE---------EecCCCC------CccccccccccceEEEe----------ccCcE
Q 043502 574 GSRSFFLITDGGFTFEYLYAESVWLW---------LRHDHST------PMRGVLGNYNGSLYMVD----------LYGSL 628 (949)
Q Consensus 574 ~~~s~fliTd~G~~fE~~~~~~~WlW---------l~H~h~T------~m~g~~g~~ngsLf~vd----------~~GsL 628 (949)
.++++|+.|.||.+|--=-..|.=+| ++.+-+. .+.+++-.+++.|++.. ..|.|
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 45788999999988865544454444 3333221 13444555888888873 26777
Q ss_pred EEEEecCCCceeeeccCCCCCceeecCCCCCC------CCC--cceeeccc-CcEEEEecCC--------e-----EeE-
Q 043502 629 LIRERSSNELAWINCTAMRKGRQVIGGPPWDG------ITG--KAMKVTAE-DALFFVSKNG--------R-----LLQ- 685 (949)
Q Consensus 629 ~~R~~~g~~~~W~n~t~mr~G~~V~~G~pwdg------ipG--~~~~vt~~-dklF~vt~~G--------r-----Llq- 685 (949)
.--.-..-+++|...+. +|. .+.+||+| -|. ..+-+-.+ +-+|+-+-|. | +|.
T Consensus 339 ~A~Da~TGkl~W~~~~g-~p~---~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPG-NPD---PTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS 414 (764)
T ss_pred EEEECCCCcEeeEEecC-CCC---cccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence 77777788899998864 221 12233321 111 11212222 2334433211 1 333
Q ss_pred ----EEEeceeeeeecCCCCCCcceEEeeccc-cc---c-cC----eEEEEccCceEeeecCc--eeeeeecCC
Q 043502 686 ----FTVALRKFKWKDCRHPLDTKVACIVDQE-LF---R-EN----IVFVVGRNGRLYQYNKV--TELWHEHYQ 744 (949)
Q Consensus 686 ----~tva~rkwkW~dhg~PPgTkIata~d~~-~~---r-~~----~iFvvG~NGrLYEwNg~--TW~WhdHGk 744 (949)
.-..+.+.+|+.--.|-+.|=--++.|- ++ . ++ .||+.++||.+|-.+.. .-+|.--..
T Consensus 415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e~ 488 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEEV 488 (764)
T ss_pred eEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeeceee
Confidence 2236788999987666555531111111 11 1 23 79999999999995553 455764444
No 59
>PRK05137 tolB translocation protein TolB; Provisional
Probab=54.63 E-value=1.3e+02 Score=33.32 Aligned_cols=18 Identities=6% Similarity=0.170 Sum_probs=13.5
Q ss_pred eecceeecCCcEEEEEec
Q 043502 229 IKSGVVSQDGERVYFCTK 246 (949)
Q Consensus 229 ik~gvvs~dg~~lff~~k 246 (949)
+.+=..|.||++|+|++.
T Consensus 204 v~~p~wSpDG~~lay~s~ 221 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSY 221 (435)
T ss_pred eEeeEECCCCCEEEEEEe
Confidence 445567899999988864
No 60
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=54.18 E-value=2.2e+02 Score=27.72 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=14.0
Q ss_pred cCeEEEEcc-CceEeeecCce
Q 043502 717 ENIVFVVGR-NGRLYQYNKVT 736 (949)
Q Consensus 717 ~~~iFvvG~-NGrLYEwNg~T 736 (949)
++.+|+.+. +|+|+.|+-.+
T Consensus 84 g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 84 GKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCC
Confidence 457888754 78888876543
No 61
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=54.15 E-value=2.8e+02 Score=28.97 Aligned_cols=154 Identities=10% Similarity=0.107 Sum_probs=71.8
Q ss_pred eeecCCcEEEEEecCCceeEeeccCCCccccC------CCCCCCceeEEeeccccCC--ceEEEEcc-CCceeeeccC--
Q 043502 233 VVSQDGERVYFCTKNGLLLELSEVEPPRWLNH------GRPPGANVAAIADAGNVRP--EVVYTISS-TGDLYEYDRI-- 301 (949)
Q Consensus 233 vvs~dg~~lff~~knG~LLe~tel~p~rW~~h------g~PPga~VA~I~D~~~~R~--~vVftiss-~GdLYeYnr~-- 301 (949)
.++.||++||.++...-.+.+-.+.+.+-... .-|+|.-.-.| .|=| ..+|++.. .+.+.-||-.
T Consensus 132 ~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~----~~~pdg~~lyv~~~~~~~v~v~~~~~~ 207 (330)
T PRK11028 132 NIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHM----VFHPNQQYAYCVNELNSSVDVWQLKDP 207 (330)
T ss_pred EeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceE----EECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 47899999999987744444443333111000 11333322111 1123 37788766 6666555432
Q ss_pred Cchhhhhhcccccccc----------ccccccCcccccccccCCceeeEEEEecCCcEEEEEee-ccceeEEEcCCCCCC
Q 043502 302 SKPSWRKHIWSKGTAA----------NASLIPSMACTLHGLIGDHSTSLFLLTKGGNLVERRIQ-QRKWKWIIHGSPEDT 370 (949)
Q Consensus 302 tkpsW~kHiws~~l~~----------~~sl~~s~g~t~~gl~g~~S~SLFlltk~G~LVErr~~-qrkWkWi~HGtP~~~ 370 (949)
+. .. +.+++-.... ...+.|.-+-...+..+++++++|=+.++|+..+..=+ .-+ -.|..
T Consensus 208 ~~-~~-~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~------~~p~~- 278 (330)
T PRK11028 208 HG-EI-ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE------TQPRG- 278 (330)
T ss_pred CC-CE-EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc------ccCCc-
Confidence 22 11 1222211100 01112222222333345667777777666543322111 111 02331
Q ss_pred cccccceeccCCccccceEEEEEcc-cceEEEEeeccCCC
Q 043502 371 HLTSITPVQQDESNEKFFSLFLTTS-AGAVFEYQIPKYSG 409 (949)
Q Consensus 371 ~l~siT~v~~d~~~~~~~sLF~t~S-~G~Vyey~~~k~tg 409 (949)
+ . ...+|.-||.+.. +|.|-.|++++.+|
T Consensus 279 ----~--~----~~~dg~~l~va~~~~~~v~v~~~~~~~g 308 (330)
T PRK11028 279 ----F--N----IDHSGKYLIAAGQKSHHISVYEIDGETG 308 (330)
T ss_pred ----e--E----ECCCCCEEEEEEccCCcEEEEEEcCCCC
Confidence 1 1 1124567888876 88999999976654
No 62
>PHA03098 kelch-like protein; Provisional
Probab=53.39 E-value=3.8e+02 Score=30.34 Aligned_cols=200 Identities=13% Similarity=0.198 Sum_probs=98.9
Q ss_pred cccceEEEeccC---cE--EEEEecCCCceeeeccCCCCCceeecCCCCCCCCCcceeecccCcEEEEecCC--eEeE--
Q 043502 615 YNGSLYMVDLYG---SL--LIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSKNG--RLLQ-- 685 (949)
Q Consensus 615 ~ngsLf~vd~~G---sL--~~R~~~g~~~~W~n~t~mr~G~~V~~G~pwdgipG~~~~vt~~dklF~vt~~G--rLlq-- 685 (949)
+++.||+++-.. .. -+--.+-..-.|...+.|+..+. + .+++ ..++++|+..-.. ..+.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~---~------~~~~---~~~~~lyv~GG~~~~~~~~~v 360 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRK---N------PGVT---VFNNRIYVIGGIYNSISLNTV 360 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccc---c------ceEE---EECCEEEEEeCCCCCEecceE
Confidence 667777765321 01 11123334556877777764432 1 2333 3688888875432 1111
Q ss_pred EEEeceeeeeecCCCCCCcceEEeecccccccCeEEEEcc---Cc----eEeeecCceeeeeecCCCCceeeecCCCcee
Q 043502 686 FTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGR---NG----RLYQYNKVTELWHEHYQSQHLVLSILPGTAM 758 (949)
Q Consensus 686 ~tva~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~---NG----rLYEwNg~TW~WhdHGkP~~t~ls~~pGtAM 758 (949)
.......-+|......|...-..+ .... +++||+.|. ++ .++.|+-.+..|..-...+... . +.++
T Consensus 361 ~~yd~~~~~W~~~~~lp~~r~~~~--~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r---~-~~~~ 433 (534)
T PHA03098 361 ESWKPGESKWREEPPLIFPRYNPC--VVNV-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH---Y-GGCA 433 (534)
T ss_pred EEEcCCCCceeeCCCcCcCCccce--EEEE-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc---c-CceE
Confidence 123455667776655544433222 2234 568888775 22 3666999999998754433221 1 2222
Q ss_pred cCCCCCCcceEEEEecCCC--------eEEEEEeCCCCeEEeecCCCCCCceeecCCCCcccCceEEEEecCCc-----e
Q 043502 759 RPPSASLTGSLFMLSEDGG--------LVEYHWNTWDGWNWVEHGTPGKGVTLVGSPGPCLHGNQLLLIGSDGK-----V 825 (949)
Q Consensus 759 ~psk~sl~gslFm~~snG~--------LyEr~Wntg~gW~WVdHGtP~~gvtvv~spG~sf~gsqLFviGSDG~-----L 825 (949)
. ...+++|+.+.... -.++|=.....|.=+ +... ..-. ..+.+..++++|++|+... -
T Consensus 434 ~----~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~--~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~ 504 (534)
T PHA03098 434 I----YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL--SSLN--FPRI-NASLCIFNNKIYVVGGDKYEYYINE 504 (534)
T ss_pred E----EECCEEEEECCccCCCCCcccceEEEecCCCCceeeC--CCCC--cccc-cceEEEECCEEEEEcCCcCCcccce
Confidence 2 23466888774221 133332223345432 2211 1111 1233455899999997542 1
Q ss_pred EEEEEeCCcceeeecCCC
Q 043502 826 YLRYMDQMTWRWKNCGFP 843 (949)
Q Consensus 826 YeRywdg~tWtW~NhG~P 843 (949)
-+. +|..+=+|..-+.|
T Consensus 505 v~~-yd~~~~~W~~~~~~ 521 (534)
T PHA03098 505 IEV-YDDKTNTWTLFCKF 521 (534)
T ss_pred eEE-EeCCCCEEEecCCC
Confidence 222 35445556555443
No 63
>PRK04043 tolB translocation protein TolB; Provisional
Probab=53.01 E-value=1.8e+02 Score=32.93 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=35.5
Q ss_pred eecceeecCCcE-EEEEecCC-------------ceeEeec----cCCCccccCCCCCCCceeEEeeccccCCceEEEEc
Q 043502 229 IKSGVVSQDGER-VYFCTKNG-------------LLLELSE----VEPPRWLNHGRPPGANVAAIADAGNVRPEVVYTIS 290 (949)
Q Consensus 229 ik~gvvs~dg~~-lff~~knG-------------~LLe~te----l~p~rW~~hg~PPga~VA~I~D~~~~R~~vVftis 290 (949)
+-+...|.||++ +||++-++ +.-+++. ...++| +|.|.++|+..+..
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~----SPDG~~la~~~~~~----------- 254 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDV----SKDGSKLLLTMAPK----------- 254 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEE----CCCCCEEEEEEccC-----------
Confidence 447788999986 77655442 2223332 112445 56677777776642
Q ss_pred cCCceeeeccCCc
Q 043502 291 STGDLYEYDRISK 303 (949)
Q Consensus 291 s~GdLYeYnr~tk 303 (949)
-+.+||.||-.+.
T Consensus 255 g~~~Iy~~dl~~g 267 (419)
T PRK04043 255 GQPDIYLYDTNTK 267 (419)
T ss_pred CCcEEEEEECCCC
Confidence 2467888886555
No 64
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=52.90 E-value=3.4e+02 Score=29.66 Aligned_cols=53 Identities=11% Similarity=0.232 Sum_probs=29.6
Q ss_pred eceeeeeecCCCCCCcceEEeecccccccCeEEEEccC---c----eEe--eecCceeeeeecC
Q 043502 689 ALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRN---G----RLY--QYNKVTELWHEHY 743 (949)
Q Consensus 689 a~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~N---G----rLY--EwNg~TW~WhdHG 743 (949)
....-+|...+..|......+ +.+.-+++|||.|.. | .+| .++-.+..|...-
T Consensus 195 D~~t~~W~~~~~~p~~~~~~~--a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~ 256 (376)
T PRK14131 195 DPSTNQWKNAGESPFLGTAGS--AVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP 256 (376)
T ss_pred ECCCCeeeECCcCCCCCCCcc--eEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC
Confidence 455566777765554333222 223336688887742 2 133 3666777888655
No 65
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=52.20 E-value=3e+02 Score=28.75 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=36.4
Q ss_pred ccccccccCCceeeEEEEecCCcEEEEEeeccceeEEEcC-CCCCCcccccceeccCCccccceEEEEEcc-cceEEEEe
Q 043502 326 ACTLHGLIGDHSTSLFLLTKGGNLVERRIQQRKWKWIIHG-SPEDTHLTSITPVQQDESNEKFFSLFLTTS-AGAVFEYQ 403 (949)
Q Consensus 326 g~t~~gl~g~~S~SLFlltk~G~LVErr~~qrkWkWi~HG-tP~~~~l~siT~v~~d~~~~~~~sLF~t~S-~G~Vyey~ 403 (949)
+..+..-.+++++++|=+.++|.|.+..-.. -. +.-| .|. + + .+. .++.-||.+.. ++.|..|.
T Consensus 138 ~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~--~~-~~~g~~p~-~----~--~~~----pdg~~lyv~~~~~~~v~v~~ 203 (330)
T PRK11028 138 RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE--VT-TVEGAGPR-H----M--VFH----PNQQYAYCVNELNSSVDVWQ 203 (330)
T ss_pred CEEEEeeCCCCEEEEEEECCCCcccccCCCc--ee-cCCCCCCc-e----E--EEC----CCCCEEEEEecCCCEEEEEE
Confidence 3344455667777777776666554311000 00 0012 132 1 2 222 23456888876 89999999
Q ss_pred eccCCC
Q 043502 404 IPKYSG 409 (949)
Q Consensus 404 ~~k~tg 409 (949)
+++-+|
T Consensus 204 ~~~~~~ 209 (330)
T PRK11028 204 LKDPHG 209 (330)
T ss_pred EeCCCC
Confidence 965433
No 66
>PRK04922 tolB translocation protein TolB; Provisional
Probab=52.09 E-value=1.9e+02 Score=32.01 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=14.1
Q ss_pred eecceeecCCcEEEEEecC
Q 043502 229 IKSGVVSQDGERVYFCTKN 247 (949)
Q Consensus 229 ik~gvvs~dg~~lff~~kn 247 (949)
+.+-..|+||++|+|+...
T Consensus 206 v~~p~wSpDg~~la~~s~~ 224 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFE 224 (433)
T ss_pred cccccCCCCCCEEEEEecC
Confidence 4455678999999988743
No 67
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=51.70 E-value=1.2e+02 Score=34.35 Aligned_cols=143 Identities=13% Similarity=0.198 Sum_probs=96.3
Q ss_pred ccCcEEEEecCCeEeEEEEeceeeeeecCCCCCCcceEEe-ecccccccCeEEEEccCceEeeecCceeeeeecCCCCce
Q 043502 670 AEDALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACI-VDQELFRENIVFVVGRNGRLYQYNKVTELWHEHYQSQHL 748 (949)
Q Consensus 670 ~~dklF~vt~~GrLlq~tva~rkwkW~dhg~PPgTkIata-~d~~~~r~~~iFvvG~NGrLYEwNg~TW~WhdHGkP~~t 748 (949)
.|.++..|++.| .+-.||...|=.|+.||-=....+.++ ..++.. +=+|+.|--|.++.|--....|-+-+.|...
T Consensus 180 ~dng~vaVg~rG-s~f~T~~aGqt~~~~~g~~s~~~letmg~adag~--~g~la~g~qg~~f~~~~~gD~wsd~~~~~~~ 256 (339)
T COG4447 180 ADNGYVAVGARG-SFFSTWGAGQTVWLPHGRNSSRRLETMGLADAGS--KGLLARGGQGDQFSWVCGGDEWSDQGEPVNL 256 (339)
T ss_pred ccCCeEEEecCc-ceEecCCCCccEEeccCCCccchhcccccccCCc--cceEEEccccceeecCCCcccccccccchhc
Confidence 678899999999 666889888889999987777776544 122222 2589999999999998889999999877664
Q ss_pred eeecCCCc-eecCCCCCCcceEEEEecCCCeEEEEEeCCCCeEEe-ecCCCCCCceeecCCCCccc-CceEEEEecCCce
Q 043502 749 VLSILPGT-AMRPPSASLTGSLFMLSEDGGLVEYHWNTWDGWNWV-EHGTPGKGVTLVGSPGPCLH-GNQLLLIGSDGKV 825 (949)
Q Consensus 749 ~ls~~pGt-AM~psk~sl~gslFm~~snG~LyEr~Wntg~gW~WV-dHGtP~~gvtvv~spG~sf~-gsqLFviGSDG~L 825 (949)
-=. .+|. -|.+ --...+++.+.-|.|-+ ++-.|=.|- |-|.|-+-.. -.+-.|. ..+.||+|-+|-+
T Consensus 257 g~~-~~Gl~d~a~---~a~~~v~v~G~gGnvl~---StdgG~t~skd~g~~er~s~---l~~V~~ts~~~~~l~Gq~Gvl 326 (339)
T COG4447 257 GRR-SWGLLDFAP---RAPPEVWVSGIGGNVLA---STDGGTTWSKDGGVEERVSN---LYSVVFTSPKAGFLCGQKGVL 326 (339)
T ss_pred ccC-CCccccccc---cCCCCeEEeccCccEEE---ecCCCeeEeccCChhhhhhh---hheEEeccCCceEEEcCCceE
Confidence 200 1111 1221 12346888888888888 656666677 7777754211 1111222 2689999998865
No 68
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=51.17 E-value=3e+02 Score=30.35 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=81.0
Q ss_pred EEEecCceEEEEeeCCeeEEEEecCCEEEEEecCCCCCccccccc-cccceEEEeccCcEEEEEecCCCceeeeccCCCC
Q 043502 570 RVMHGSRSFFLITDGGFTFEYLYAESVWLWLRHDHSTPMRGVLGN-YNGSLYMVDLYGSLLIRERSSNELAWINCTAMRK 648 (949)
Q Consensus 570 rvmh~~~s~fliTd~G~~fE~~~~~~~WlWl~H~h~T~m~g~~g~-~ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~ 648 (949)
=+++.++.|++.|-.. ++ .+..+. ..|+||.+|.+|++...-...
T Consensus 116 ~~v~pdG~~wfgt~~~----------------~~-----~~~~~~~~~G~lyr~~p~g~~~~l~~~~------------- 161 (307)
T COG3386 116 GVVDPDGRIWFGDMGY----------------FD-----LGKSEERPTGSLYRVDPDGGVVRLLDDD------------- 161 (307)
T ss_pred eeEcCCCCEEEeCCCc----------------cc-----cCccccCCcceEEEEcCCCCEEEeecCc-------------
Confidence 4667778888777654 11 222222 456999999877765332211
Q ss_pred CceeecCCCCCCCCCcceeecccCcEEEEecC--CeEeEEEEeceeeeeecCCCCCCcceEEeecccccccCeEEEEccC
Q 043502 649 GRQVIGGPPWDGITGKAMKVTAEDALFFVSKN--GRLLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRN 726 (949)
Q Consensus 649 G~~V~~G~pwdgipG~~~~vt~~dklF~vt~~--GrLlq~tva~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~N 726 (949)
-.+.+ |++. ..|+|.+.+++. ++++.+-+.. ..|.+.+.......+.+-.. =.=+++.++
T Consensus 162 -~~~~N--------Gla~--SpDg~tly~aDT~~~~i~r~~~d~------~~g~~~~~~~~~~~~~~~G~-PDG~~vDad 223 (307)
T COG3386 162 -LTIPN--------GLAF--SPDGKTLYVADTPANRIHRYDLDP------ATGPIGGRRGFVDFDEEPGL-PDGMAVDAD 223 (307)
T ss_pred -EEecC--------ceEE--CCCCCEEEEEeCCCCeEEEEecCc------ccCccCCcceEEEccCCCCC-CCceEEeCC
Confidence 12333 3444 677777777766 5555544432 44555444333332222111 145788889
Q ss_pred ceEee---ecC-ceeeeeecCCCCceeeecCCCceecCCCCCCcceEEEEecC
Q 043502 727 GRLYQ---YNK-VTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSED 775 (949)
Q Consensus 727 GrLYE---wNg-~TW~WhdHGkP~~t~ls~~pGtAM~psk~sl~gslFm~~sn 775 (949)
|+||- |+| .--.++-+|+.-..+....+.+++-..-.--...||+.++.
T Consensus 224 G~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 224 GNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred CCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 99983 665 33347777777776644322222211000012367777764
No 69
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=51.15 E-value=3.9e+02 Score=34.17 Aligned_cols=166 Identities=16% Similarity=0.160 Sum_probs=99.9
Q ss_pred eeecccCcEEEEecCCeEeEEEE-eceeeeeecCCCC----------CCcceEEeeccccccc-CeEEEEccCceEee--
Q 043502 666 MKVTAEDALFFVSKNGRLLQFTV-ALRKFKWKDCRHP----------LDTKVACIVDQELFRE-NIVFVVGRNGRLYQ-- 731 (949)
Q Consensus 666 ~~vt~~dklF~vt~~GrLlq~tv-a~rkwkW~dhg~P----------PgTkIata~d~~~~r~-~~iFvvG~NGrLYE-- 731 (949)
..+++-|.|+|.|.+|++|..-+ ..-.-+|++-|.| +|.+|..++.-.-|.+ .-++.++++|..-.
T Consensus 558 ~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~ 637 (957)
T PRK13979 558 IQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTS 637 (957)
T ss_pred EEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEe
Confidence 56779999999999999999766 7778888888874 3677766654433433 34778899999655
Q ss_pred ---ecCceeeeeecCCCCceeeecCCCceecCCCCCCc----ceEEEEecCCCeEEEEEeCCCCeEEeecCCCCCCceee
Q 043502 732 ---YNKVTELWHEHYQSQHLVLSILPGTAMRPPSASLT----GSLFMLSEDGGLVEYHWNTWDGWNWVEHGTPGKGVTLV 804 (949)
Q Consensus 732 ---wNg~TW~WhdHGkP~~t~ls~~pGtAM~psk~sl~----gslFm~~snG~LyEr~Wntg~gW~WVdHGtP~~gvtvv 804 (949)
|.... .+ -..++=..|--++.-....+ ..+++.+.+|.....--+ .=+.=|+..+||..+
T Consensus 638 L~ef~~~r-----~~---~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~-----eVr~mGR~a~GVkgI 704 (957)
T PRK13979 638 LDKFVTNY-----TK---LMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEP-----ELEPVDRNIIGYQLF 704 (957)
T ss_pred hhhccccc-----cc---eEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHH-----HCcccCCCCcCeeeE
Confidence 33321 11 11111112222211111111 248899998876654333 234567776663322
Q ss_pred cCCC-----------------------------------------CcccCceEEEEecCCceEEEEEeCCcceeeecCCC
Q 043502 805 GSPG-----------------------------------------PCLHGNQLLLIGSDGKVYLRYMDQMTWRWKNCGFP 843 (949)
Q Consensus 805 ~spG-----------------------------------------~sf~gsqLFviGSDG~LYeRywdg~tWtW~NhG~P 843 (949)
.-.. .|.--.+|++.++.|++|..=...-.= |.+-|.|
T Consensus 705 ~L~~~D~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~d~Ll~FTn~Gkvy~ikv~eIPe-~~~kG~~ 783 (957)
T PRK13979 705 DLLPNDSIKKVDFCDNYEYKEFYVNINKKGIIKISDKDNKSSISVFTNSSKNLLIFSDEGKVYKIPAFMLQN-IKNEGIN 783 (957)
T ss_pred eeCCCCEEEEEEEEhhhhhcchhhhcccccceeecccccccccceeecCCceEEEEecCCeEEEEEeeeccc-ccccCcC
Confidence 2110 111235899999999999877664422 7888888
Q ss_pred CC
Q 043502 844 HK 845 (949)
Q Consensus 844 ~~ 845 (949)
.+
T Consensus 784 i~ 785 (957)
T PRK13979 784 IS 785 (957)
T ss_pred HH
Confidence 43
No 70
>PRK00178 tolB translocation protein TolB; Provisional
Probab=51.07 E-value=88 Score=34.07 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=13.8
Q ss_pred eecceeecCCcEEEEEecC
Q 043502 229 IKSGVVSQDGERVYFCTKN 247 (949)
Q Consensus 229 ik~gvvs~dg~~lff~~kn 247 (949)
+.+-..|+||++|+|+..+
T Consensus 201 ~~~p~wSpDG~~la~~s~~ 219 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFE 219 (430)
T ss_pred eeeeeECCCCCEEEEEEcC
Confidence 3455788999999887654
No 71
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=50.99 E-value=2.2e+02 Score=31.22 Aligned_cols=139 Identities=19% Similarity=0.341 Sum_probs=82.5
Q ss_pred EeceeeeeecCCCCCCcceEEeeccc-ccccCeEEEEcc---Cc----eEeeecCceeeeeecCC-CCceeeecCCCc--
Q 043502 688 VALRKFKWKDCRHPLDTKVACIVDQE-LFRENIVFVVGR---NG----RLYQYNKVTELWHEHYQ-SQHLVLSILPGT-- 756 (949)
Q Consensus 688 va~rkwkW~dhg~PPgTkIata~d~~-~~r~~~iFvvG~---NG----rLYEwNg~TW~WhdHGk-P~~t~ls~~pGt-- 756 (949)
|....-.|..-|+. |..-+... ..++++++++|. || .|-+||-.+.+|..-+. .+ +..||.
T Consensus 21 yd~~~~qW~~~g~~----i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s----~~ipgpv~ 92 (281)
T PF12768_consen 21 YDTDNSQWSSPGNG----ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSS----NSIPGPVT 92 (281)
T ss_pred EECCCCEeecCCCC----ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCccc----ccCCCcEE
Confidence 34444556655544 64444444 457889999985 23 36668888888866555 32 112222
Q ss_pred eecCCCCCCcceEE--EEecCCCeEEEEEeCCCCeEEeecCCCCCC-----ceeecC-C-----CCcccCceEEEEecC-
Q 043502 757 AMRPPSASLTGSLF--MLSEDGGLVEYHWNTWDGWNWVEHGTPGKG-----VTLVGS-P-----GPCLHGNQLLLIGSD- 822 (949)
Q Consensus 757 AM~psk~sl~gslF--m~~snG~LyEr~Wntg~gW~WVdHGtP~~g-----vtvv~s-p-----G~sf~gsqLFviGSD- 822 (949)
|+.... .-...+| .+..+|.-|=..|+ |+.|+=++-+.-..+ +.++.. + ..-++.+|++++.+.
T Consensus 93 a~~~~~-~d~~~~~~aG~~~~g~~~l~~~d-Gs~W~~i~~~~~~~~t~I~~l~~~~l~~~~~~~~~~~~~~~~Llv~G~l 170 (281)
T PF12768_consen 93 ALTFIS-NDGSNFWVAGRSANGSTFLMKYD-GSSWSSIGSDILGSGTTIRGLQVLPLNSSSHDNSSLFDSDQVLLVTGSL 170 (281)
T ss_pred EEEeec-cCCceEEEeceecCCCceEEEEc-CCceEeccccccCCCCEEEEEEEEeccccccccccccCCCcEEEEEeeE
Confidence 333211 1112234 33368888888898 999888877443333 444444 2 223567788877643
Q ss_pred -----CceEEEEEeCCcce
Q 043502 823 -----GKVYLRYMDQMTWR 836 (949)
Q Consensus 823 -----G~LYeRywdg~tWt 836 (949)
|++=--+++++.|+
T Consensus 171 ~~~~~G~~saalydG~~w~ 189 (281)
T PF12768_consen 171 NLPDFGNASAALYDGTSWT 189 (281)
T ss_pred ecCCCCcEEEEEECCCEEE
Confidence 88888888988886
No 72
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=50.90 E-value=55 Score=36.93 Aligned_cols=62 Identities=18% Similarity=0.307 Sum_probs=39.7
Q ss_pred eecCCcEEEEEecCCceeEee-ccCC--CccccCC--CCCCCceeEEeeccccCCceEEEEccCCc--eeeec
Q 043502 234 VSQDGERVYFCTKNGLLLELS-EVEP--PRWLNHG--RPPGANVAAIADAGNVRPEVVYTISSTGD--LYEYD 299 (949)
Q Consensus 234 vs~dg~~lff~~knG~LLe~t-el~p--~rW~~hg--~PPga~VA~I~D~~~~R~~vVftiss~Gd--LYeYn 299 (949)
...++.++++++++|.|..++ +... ++=+.-+ .|+.+-+++.-+. ..++|+-|+.|| ||+++
T Consensus 218 ~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g----~d~lf~gs~~gds~l~~~~ 286 (504)
T PF10433_consen 218 YDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNG----GDYLFVGSEFGDSQLLQIS 286 (504)
T ss_dssp SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT------EEEEEESSS-EEEEEEE
T ss_pred ecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCC----CEEEEEEEecCCcEEEEEe
Confidence 667889999999999998887 3322 2233333 4555555554433 569999999887 77777
No 73
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=50.29 E-value=42 Score=38.60 Aligned_cols=86 Identities=23% Similarity=0.396 Sum_probs=54.3
Q ss_pred cCCceeEee--ccCCCccccCC---------CCCCCceeEEeeccc-cCCceEEEEccCCceeeeccCCchhhhhhcccc
Q 043502 246 KNGLLLELS--EVEPPRWLNHG---------RPPGANVAAIADAGN-VRPEVVYTISSTGDLYEYDRISKPSWRKHIWSK 313 (949)
Q Consensus 246 knG~LLe~t--el~p~rW~~hg---------~PPga~VA~I~D~~~-~R~~vVftiss~GdLYeYnr~tkpsW~kHiws~ 313 (949)
..|.++-|. -|+|.-=.+++ +|-|+.+|--+|+++ || ||.|+.--+||||-|-+.|
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIR---Vf~v~~G~kl~eFRRG~~~--------- 218 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIR---VFSVPEGQKLYEFRRGTYP--------- 218 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEE---EEEcCCccEeeeeeCCcee---------
Confidence 356665555 35555555554 577888888899886 45 9999888899999999884
Q ss_pred ccccccccccCcccccccccC-CceeeEEEEec
Q 043502 314 GTAANASLIPSMACTLHGLIG-DHSTSLFLLTK 345 (949)
Q Consensus 314 ~l~~~~sl~~s~g~t~~gl~g-~~S~SLFlltk 345 (949)
+.-.||.=++-..++.-++ +-++=+|=|.+
T Consensus 219 --~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 219 --VSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred --eEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 2223444344334444333 23455666654
No 74
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=49.48 E-value=16 Score=27.46 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=15.3
Q ss_pred eecceeecCCcEEEEEecCC
Q 043502 229 IKSGVVSQDGERVYFCTKNG 248 (949)
Q Consensus 229 ik~gvvs~dg~~lff~~knG 248 (949)
..+-.+|.||++|+|+..+.
T Consensus 11 ~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEEEEE-TTSSEEEEEEECT
T ss_pred ccCEEEecCCCEEEEEecCC
Confidence 44567899999999998764
No 75
>PRK04792 tolB translocation protein TolB; Provisional
Probab=48.32 E-value=3e+02 Score=31.10 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=13.1
Q ss_pred ceeecCCcEEEEE-ecCCc
Q 043502 232 GVVSQDGERVYFC-TKNGL 249 (949)
Q Consensus 232 gvvs~dg~~lff~-~knG~ 249 (949)
-..|.||++|+|+ +++|.
T Consensus 267 ~~wSPDG~~La~~~~~~g~ 285 (448)
T PRK04792 267 PRFSPDGKKLALVLSKDGQ 285 (448)
T ss_pred eeECCCCCEEEEEEeCCCC
Confidence 3578999998875 55664
No 76
>PRK05137 tolB translocation protein TolB; Provisional
Probab=45.04 E-value=2.6e+02 Score=30.96 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=12.0
Q ss_pred cceeecCCcEEEEE-ecCC
Q 043502 231 SGVVSQDGERVYFC-TKNG 248 (949)
Q Consensus 231 ~gvvs~dg~~lff~-~knG 248 (949)
+-.+|.||++|+|+ +++|
T Consensus 250 ~~~~SPDG~~la~~~~~~g 268 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGG 268 (435)
T ss_pred CcEECCCCCEEEEEEecCC
Confidence 44678899888665 3444
No 77
>smart00602 VPS10 VPS10 domain.
Probab=44.63 E-value=6.2e+02 Score=30.27 Aligned_cols=110 Identities=11% Similarity=0.139 Sum_probs=52.4
Q ss_pred cCceEEEEeeCCeeEEEE--ecC-CEEEEEecCC-CCCccccccccccceEEEeccCcEEEEEecCCCceeeeccCCCCC
Q 043502 574 GSRSFFLITDGGFTFEYL--YAE-SVWLWLRHDH-STPMRGVLGNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKG 649 (949)
Q Consensus 574 ~~~s~fliTd~G~~fE~~--~~~-~~WlWl~H~h-~T~m~g~~g~~ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G 649 (949)
..+.+|.-+|+|.+|+.+ ..+ ..-..+.|=. +.... .+.+ + ..|.|++-+=.|..|..+.-... +-
T Consensus 8 ~~g~vyrS~D~G~TW~~i~~~~~~~i~~i~~~~~~~p~~~--~~~~-----~--~~~~ly~S~D~GkTW~~~~~p~~-~~ 77 (612)
T smart00602 8 EESSVYISEDYGKTWKKIDEIEGVIIETVISDFFNSSANK--FKTI-----L--VKGYIFISSDEGKSFQKFTLPFP-PL 77 (612)
T ss_pred cCCcEEEecCCCcCceeccccCCCceeEEEeCCcCCccce--eEEE-----e--cCCcEEEeecCCcceeEEECCCC-Cc
Confidence 467899999999999987 222 2222222221 11111 1111 0 24444444444555554432110 00
Q ss_pred ceeecCCCCCCCCCcceeecccC---cEEEEecCCeEeEEEE-e--ceeeeee
Q 043502 650 RQVIGGPPWDGITGKAMKVTAED---ALFFVSKNGRLLQFTV-A--LRKFKWK 696 (949)
Q Consensus 650 ~~V~~G~pwdgipG~~~~vt~~d---klF~vt~~GrLlq~tv-a--~rkwkW~ 696 (949)
..+..- |- -|...+-+..+. .+|+.++.|+-|+..- . .-+|.|.
T Consensus 78 ~~l~~h-p~--~~~~il~~~~~~~~~~ly~S~DgG~tW~~i~~~v~~cqf~~~ 127 (612)
T smart00602 78 PSLLYH-PK--HPDYVLAYSKDCNYKVLYVSKDFGKTWTEIQENVESCEFSWG 127 (612)
T ss_pred cceEEC-CC--CCCEEEEEecCCCCceEEEEcCCCCCcEEcccccceeEEEec
Confidence 112211 11 133333223333 7899999999887543 2 2347786
No 78
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=44.31 E-value=3.1e+02 Score=26.67 Aligned_cols=20 Identities=10% Similarity=0.192 Sum_probs=14.6
Q ss_pred ceEEEEc-cCCceeeeccCCc
Q 043502 284 EVVYTIS-STGDLYEYDRISK 303 (949)
Q Consensus 284 ~vVftis-s~GdLYeYnr~tk 303 (949)
+.+|+.+ .+|.|+.||-.+.
T Consensus 85 ~~l~~~~~~~~~l~~~d~~~~ 105 (300)
T TIGR03866 85 KILYIANEDDNLVTVIDIETR 105 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCC
Confidence 3566664 5789999998764
No 79
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=43.31 E-value=28 Score=37.79 Aligned_cols=65 Identities=18% Similarity=0.096 Sum_probs=46.4
Q ss_pred eecccCcEEEEecCCeEeEEEEeceeeeeecCCCCCCcceEEeecccccccCeEEEEccCceEeeec
Q 043502 667 KVTAEDALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQYN 733 (949)
Q Consensus 667 ~vt~~dklF~vt~~GrLlq~tva~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~NGrLYEwN 733 (949)
-++.+++|.+.+.+|.+++|.|.+ +-=+.-..|.+-..-.++-|.+=.++...++..||++|++|
T Consensus 66 v~~~~~~~~vG~~dg~v~~~n~n~--~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n 130 (238)
T KOG2444|consen 66 VVTASAKLMVGTSDGAVYVFNWNL--EGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACN 130 (238)
T ss_pred ecccCceEEeecccceEEEecCCc--cchHHHhhhcccccceeccccccccceeEEeccCCceeeec
Confidence 345788999999999999987752 22223344555555555556666677999999999999954
No 80
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=42.43 E-value=1.9e+02 Score=30.81 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=12.7
Q ss_pred ceeecCCcEEEEEecCC
Q 043502 232 GVVSQDGERVYFCTKNG 248 (949)
Q Consensus 232 gvvs~dg~~lff~~knG 248 (949)
...+.||++|+|++.++
T Consensus 283 ~~~s~dg~~l~~~s~~~ 299 (417)
T TIGR02800 283 PSWSPDGKSIAFTSDRG 299 (417)
T ss_pred EEECCCCCEEEEEECCC
Confidence 34578999998887654
No 81
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=42.39 E-value=6e+02 Score=30.28 Aligned_cols=181 Identities=20% Similarity=0.273 Sum_probs=103.2
Q ss_pred ccccceEEEeccCc-----EEEEEecCCCceeeeccCCCCCceeecCCCCCCCCCcceeecccCcEEEEecCC--eEeEE
Q 043502 614 NYNGSLYMVDLYGS-----LLIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSKNG--RLLQF 686 (949)
Q Consensus 614 ~~ngsLf~vd~~Gs-----L~~R~~~g~~~~W~n~t~mr~G~~V~~G~pwdgipG~~~~vt~~dklF~vt~~G--rLlq~ 686 (949)
.+.+.||++.--.+ --+....-..=.|..++.|+..+.. .|++. .++++|++.-.- ...-.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~---------~~~~~---~~~~lYv~GG~~~~~~~l~ 349 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCR---------VGVAV---LNGKLYVVGGYDSGSDRLS 349 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccccc---------ccEEE---ECCEEEEEccccCCCcccc
Confidence 57788888765443 1122223333379999999866662 33444 789999986443 22222
Q ss_pred ---EEeceeeeeecCCCCCCcceEEeecccccccCeEE-EEccCceEee-----ecCceeeeeecCCCCceeeecCCCce
Q 043502 687 ---TVALRKFKWKDCRHPLDTKVACIVDQELFRENIVF-VVGRNGRLYQ-----YNKVTELWHEHYQSQHLVLSILPGTA 757 (949)
Q Consensus 687 ---tva~rkwkW~dhg~PPgTkIata~d~~~~r~~~iF-vvG~NGrLYE-----wNg~TW~WhdHGkP~~t~ls~~pGtA 757 (949)
....+.=+|.. .-|-.+.-..+ +-..+.+ .|| |+|+||.=+- |.-.+..|+-=+.-+... . |.+
T Consensus 350 ~ve~YD~~~~~W~~-~a~M~~~R~~~-~v~~l~g-~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r-~---~~g 422 (571)
T KOG4441|consen 350 SVERYDPRTNQWTP-VAPMNTKRSDF-GVAVLDG-KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR-S---GHG 422 (571)
T ss_pred eEEEecCCCCceec-cCCccCccccc-eeEEECC-EEEEEeccccccccccEEEecCCCCcccccCCCCcce-e---eeE
Confidence 22455555877 44433333332 2224544 555 4578887332 999999997655333321 1 222
Q ss_pred ecCCCCCCcceEEEEec-CC-----CeEEEEEeCCCCeEEeecCCCCCCceeecCCCCcccCceEEEEecC
Q 043502 758 MRPPSASLTGSLFMLSE-DG-----GLVEYHWNTWDGWNWVEHGTPGKGVTLVGSPGPCLHGNQLLLIGSD 822 (949)
Q Consensus 758 M~psk~sl~gslFm~~s-nG-----~LyEr~Wntg~gW~WVdHGtP~~gvtvv~spG~sf~gsqLFviGSD 822 (949)
... +.+.+|+.+. +| +-+|+|=--...|+=+.=- .+--..-|.+..+.+||++|+.
T Consensus 423 v~~----~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M-----~~~R~~~g~a~~~~~iYvvGG~ 484 (571)
T KOG4441|consen 423 VAV----LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM-----NTRRSGFGVAVLNGKIYVVGGF 484 (571)
T ss_pred EEE----ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCc-----ccccccceEEEECCEEEEECCc
Confidence 221 3467888876 43 3478876666677654322 1112233456788999999883
No 82
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=41.93 E-value=3.3e+02 Score=30.73 Aligned_cols=139 Identities=16% Similarity=0.228 Sum_probs=79.2
Q ss_pred ccCcEEEEecCCeEeEEEEeceeeeeecCCCC-CCcceEEeecccccccCeEEEEccCceEeeecCceeeeeecCCCCc-
Q 043502 670 AEDALFFVSKNGRLLQFTVALRKFKWKDCRHP-LDTKVACIVDQELFRENIVFVVGRNGRLYQYNKVTELWHEHYQSQH- 747 (949)
Q Consensus 670 ~~dklF~vt~~GrLlq~tva~rkwkW~dhg~P-PgTkIata~d~~~~r~~~iFvvG~NGrLYEwNg~TW~WhdHGkP~~- 747 (949)
-...||+.+.+|++. .|.++.=.-.-.--| ++|-|.++ ..+-.++.+-++..-|++|-|+--+-.=..+-+|-+
T Consensus 135 nQteLis~dqsg~ir--vWDl~~~~c~~~liPe~~~~i~sl--~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k 210 (311)
T KOG0315|consen 135 NQTELISGDQSGNIR--VWDLGENSCTHELIPEDDTSIQSL--TVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHK 210 (311)
T ss_pred CcceEEeecCCCcEE--EEEccCCccccccCCCCCcceeeE--EEcCCCcEEEEecCCccEEEEEccCCCccccceEhhh
Confidence 345689999999985 444443322222334 56666554 334445566777778999998877733444445544
Q ss_pred ------eeeecCCCceecCCCCCCc-----ceEEEEecCCC-eEEEEEeCCCCeEEeecCCCCCCceeecCCCCcccCce
Q 043502 748 ------LVLSILPGTAMRPPSASLT-----GSLFMLSEDGG-LVEYHWNTWDGWNWVEHGTPGKGVTLVGSPGPCLHGNQ 815 (949)
Q Consensus 748 ------t~ls~~pGtAM~psk~sl~-----gslFm~~snG~-LyEr~Wntg~gW~WVdHGtP~~gvtvv~spG~sf~gsq 815 (949)
.+++ |-..|..++|. ..+.+-..++- --|..=..+.+|.|= |.. +.++-.
T Consensus 211 ~~ah~~~il~----C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWd--------c~F------S~dg~Y 272 (311)
T KOG0315|consen 211 FQAHNGHILR----CLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWD--------CAF------SADGEY 272 (311)
T ss_pred eecccceEEE----EEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEe--------eee------ccCccE
Confidence 2333 44444433322 23444455555 456666767789882 221 234456
Q ss_pred EEEEecCCceEEEEEeC
Q 043502 816 LLLIGSDGKVYLRYMDQ 832 (949)
Q Consensus 816 LFviGSDG~LYeRywdg 832 (949)
||.-++| .+-|.|+-
T Consensus 273 lvTassd--~~~rlW~~ 287 (311)
T KOG0315|consen 273 LVTASSD--HTARLWDL 287 (311)
T ss_pred EEecCCC--Cceeeccc
Confidence 6665666 67788883
No 83
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=40.49 E-value=31 Score=24.74 Aligned_cols=29 Identities=31% Similarity=0.531 Sum_probs=23.5
Q ss_pred eecCCcEEEEEecCCceeEee-ccCCCcccc
Q 043502 234 VSQDGERVYFCTKNGLLLELS-EVEPPRWLN 263 (949)
Q Consensus 234 vs~dg~~lff~~knG~LLe~t-el~p~rW~~ 263 (949)
+..|| .+|+.+.+|.|.-+. +--+.+|+.
T Consensus 3 ~~~~~-~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 3 VLSDG-TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEECC-EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 45666 599999999999998 578888863
No 84
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=40.48 E-value=26 Score=26.33 Aligned_cols=31 Identities=23% Similarity=0.616 Sum_probs=24.7
Q ss_pred CCCCCCCcceeecc--cCcEEEEecCCeEeEEE
Q 043502 657 PWDGITGKAMKVTA--EDALFFVSKNGRLLQFT 687 (949)
Q Consensus 657 pwdgipG~~~~vt~--~dklF~vt~~GrLlq~t 687 (949)
.|.-|||....|+. ++.++.|+.+|++|.++
T Consensus 2 ~W~~v~g~l~~isvg~~~~vW~V~~~g~i~~r~ 34 (35)
T smart00706 2 SWTQVPGELVQVSVGPSDTVWAVNSDGNIYRRT 34 (35)
T ss_pred CcEEcCCCEEEEEECCCCeEEEEcCCCCEEEEC
Confidence 47778888876654 47999999999999763
No 85
>PLN02193 nitrile-specifier protein
Probab=39.35 E-value=3.1e+02 Score=31.24 Aligned_cols=157 Identities=15% Similarity=0.365 Sum_probs=75.9
Q ss_pred eeeeeecceeEEEecccC----chheeec----cceeEEEccC--CCcccc--CCeEEEEEEeceeeehhcc------Cc
Q 043502 131 ISLTKMSETSIWVTGVSG----SVYERFW----NGVQWVIAPH--DLPISA--GPAISVFIVNQRILALAEA------GV 192 (949)
Q Consensus 131 isltkmsetsiwvtgesg----siyerfw----ng~~wviaph--dlp~s~--g~ai~vfivn~tilalsea------g~ 192 (949)
-++... +..|+|.|-.. .....+| .--+|...|- ++|-.+ ||+ +..++..|....=. .-
T Consensus 169 h~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~--~v~~~~~lYvfGG~~~~~~~nd 245 (470)
T PLN02193 169 HGIAQV-GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVR--MVSIGSTLYVFGGRDASRQYNG 245 (470)
T ss_pred cEEEEE-CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceE--EEEECCEEEEECCCCCCCCCcc
Confidence 344433 34577776421 1222233 1346887653 677543 554 44567777765321 23
Q ss_pred eEEEecCCCCcceEEEeeccccccccccccccceeEeecceeecCCcEEEEE---ecCCceeEee--ccCCCccccCCCC
Q 043502 193 LYQMQLGDNSQPIWVEFIPAIDQSINGEAEQRSVIQIKSGVVSQDGERVYFC---TKNGLLLELS--EVEPPRWLNHGRP 267 (949)
Q Consensus 193 lyqmql~e~sqpiw~ef~~~~~~~~~~~~~qs~~~~ik~gvvs~dg~~lff~---~knG~LLe~t--el~p~rW~~hg~P 267 (949)
+|...+.. -.|.+..|..+... ..+ ...++..++ +||+. +..+.+-.+- .++.-+|..+..|
T Consensus 246 v~~yD~~t---~~W~~l~~~~~~P~----~R~-----~h~~~~~~~-~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~ 312 (470)
T PLN02193 246 FYSFDTTT---NEWKLLTPVEEGPT----PRS-----FHSMAADEE-NVYVFGGVSATARLKTLDSYNIVDKKWFHCSTP 312 (470)
T ss_pred EEEEECCC---CEEEEcCcCCCCCC----Ccc-----ceEEEEECC-EEEEECCCCCCCCcceEEEEECCCCEEEeCCCC
Confidence 44444332 35776554321100 000 112334444 56654 3333443333 5667789877543
Q ss_pred CCCc---e-eEEeeccccCCceEEEEcc-----CCceeeeccCCchhhhh
Q 043502 268 PGAN---V-AAIADAGNVRPEVVYTISS-----TGDLYEYDRISKPSWRK 308 (949)
Q Consensus 268 Pga~---V-A~I~D~~~~R~~vVftiss-----~GdLYeYnr~tkpsW~k 308 (949)
.+.. - +.++ ++. +-||+++- ..++|.||..+. .|.+
T Consensus 313 ~~~~~~R~~~~~~---~~~-gkiyviGG~~g~~~~dv~~yD~~t~-~W~~ 357 (470)
T PLN02193 313 GDSFSIRGGAGLE---VVQ-GKVWVVYGFNGCEVDDVHYYDPVQD-KWTQ 357 (470)
T ss_pred CCCCCCCCCcEEE---EEC-CcEEEEECCCCCccCceEEEECCCC-EEEE
Confidence 2111 0 1111 122 44677653 258999999998 7865
No 86
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=39.31 E-value=3.1e+02 Score=29.76 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.0
Q ss_pred EEecCceEEEEeeCCe
Q 043502 571 VMHGSRSFFLITDGGF 586 (949)
Q Consensus 571 vmh~~~s~fliTd~G~ 586 (949)
+.-.+..|++|+|+|.
T Consensus 27 ~~~~~~~~~avSD~g~ 42 (326)
T PF13449_consen 27 YDPDDGRFYAVSDRGP 42 (326)
T ss_pred EeCCCCEEEEEECCCC
Confidence 3336789999999999
No 87
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=39.04 E-value=5.1e+02 Score=29.35 Aligned_cols=72 Identities=19% Similarity=0.225 Sum_probs=42.1
Q ss_pred cceeecccCcEEEEecCCeEeEEEEeceeeeeecCCCCCCcceEEe-ecccccccCeEEEEccCceEeeecCce
Q 043502 664 KAMKVTAEDALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACI-VDQELFRENIVFVVGRNGRLYQYNKVT 736 (949)
Q Consensus 664 ~~~~vt~~dklF~vt~~GrLlq~tva~rkwkW~dhg~PPgTkIata-~d~~~~r~~~iFvvG~NGrLYEwNg~T 736 (949)
..|-.|.++.|.+|++||.+.-+-+-+.. ...---.....+|..+ +.+.-+-++=+++...|+++|.-++..
T Consensus 84 v~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~ 156 (410)
T PF04841_consen 84 VGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNID 156 (410)
T ss_pred EEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCcc
Confidence 45677899999999999999887664443 1111001122233222 122233323366777899999955544
No 88
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=38.58 E-value=26 Score=26.78 Aligned_cols=20 Identities=25% Similarity=0.615 Sum_probs=15.1
Q ss_pred CCcccCceEEEEecCCceEE
Q 043502 808 GPCLHGNQLLLIGSDGKVYL 827 (949)
Q Consensus 808 G~sf~gsqLFviGSDG~LYe 827 (949)
.|...+++||+.+.||++|-
T Consensus 16 ~~~v~~g~vyv~~~dg~l~a 35 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDGNLYA 35 (40)
T ss_dssp --EECTSEEEEE-TTSEEEE
T ss_pred CCEEECCEEEEEcCCCEEEE
Confidence 34677899999999999984
No 89
>PRK04792 tolB translocation protein TolB; Provisional
Probab=37.52 E-value=5.4e+02 Score=29.16 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=14.0
Q ss_pred EeecceeecCCcEEEEEec
Q 043502 228 QIKSGVVSQDGERVYFCTK 246 (949)
Q Consensus 228 ~ik~gvvs~dg~~lff~~k 246 (949)
.+.+-..|+||++|+|+..
T Consensus 219 ~~~~p~wSPDG~~La~~s~ 237 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSF 237 (448)
T ss_pred cccCceECCCCCEEEEEEe
Confidence 3445678899999988754
No 90
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=36.97 E-value=2.2e+02 Score=31.44 Aligned_cols=112 Identities=16% Similarity=0.235 Sum_probs=63.3
Q ss_pred eEeecce-eecCCcEEEEEecCCceeEeeccCCCccccCCCCCCCceeEEeeccccCCceEEEEccCCceeeeccCCchh
Q 043502 227 IQIKSGV-VSQDGERVYFCTKNGLLLELSEVEPPRWLNHGRPPGANVAAIADAGNVRPEVVYTISSTGDLYEYDRISKPS 305 (949)
Q Consensus 227 ~~ik~gv-vs~dg~~lff~~knG~LLe~tel~p~rW~~hg~PPga~VA~I~D~~~~R~~vVftiss~GdLYeYnr~tkps 305 (949)
|.|-||+ .|.||+.+||+..-.+.+.--.+.+ ..+.+-+.+..++.|.+.-+|+= +++.++|.||- ....- -
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~----~~g~~~~~~~~~~~~~~~G~PDG-~~vDadG~lw~-~a~~~-g 234 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP----ATGPIGGRRGFVDFDEEPGLPDG-MAVDADGNLWV-AAVWG-G 234 (307)
T ss_pred EEecCceEECCCCCEEEEEeCCCCeEEEEecCc----ccCccCCcceEEEccCCCCCCCc-eEEeCCCCEEE-ecccC-C
Confidence 7788887 5999999999988755544433333 44555555556666666666653 46666666663 22111 1
Q ss_pred hhhhccccc-cccccccccCcccccccccCCceeeEEEEec
Q 043502 306 WRKHIWSKG-TAANASLIPSMACTLHGLIGDHSTSLFLLTK 345 (949)
Q Consensus 306 W~kHiws~~-l~~~~sl~~s~g~t~~gl~g~~S~SLFlltk 345 (949)
|+=|.++++ .....-..|.+.++..-+-|.----||+.|-
T Consensus 235 ~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 235 GRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 233444443 2333344455555555555543345666665
No 91
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=36.94 E-value=67 Score=36.39 Aligned_cols=110 Identities=20% Similarity=0.215 Sum_probs=73.1
Q ss_pred ccCcEEEEecCCeEeE----EEEeceeeeeecCCCCCCcceEEeecccccccCeEEEEccCceEeeecCc---eeeeeec
Q 043502 670 AEDALFFVSKNGRLLQ----FTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQYNKV---TELWHEH 742 (949)
Q Consensus 670 ~~dklF~vt~~GrLlq----~tva~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~NGrLYEwNg~---TW~WhdH 742 (949)
.-.++|+...+|++.- ..+-..-++|+.|-.| .|+|..-+++. |.||.+|-||+|--|.-- ++.|++-
T Consensus 132 ~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E--~Wta~f~~~~p---nlvytGgDD~~l~~~D~R~p~~~i~~n~ 206 (339)
T KOG0280|consen 132 SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE--AWTAKFSDKEP---NLVYTGGDDGSLSCWDIRIPKTFIWHNS 206 (339)
T ss_pred cCceEEEEcCCCcEEEEecceeeeeeccccccccee--eeeeecccCCC---ceEEecCCCceEEEEEecCCcceeeecc
Confidence 3467899999999872 3334556899999999 78888877766 799999999999886544 8888864
Q ss_pred CCCCceeeecCCCceecCCCCCCcceEEEEecCCCeEEEEEeCCCCeEEeecCCCCC
Q 043502 743 YQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWDGWNWVEHGTPGK 799 (949)
Q Consensus 743 GkP~~t~ls~~pGtAM~psk~sl~gslFm~~snG~LyEr~Wntg~gW~WVdHGtP~~ 799 (949)
=.=...+ |+|-. .+..+.++|..+=|-.+ |.|+ =+-=|+|..
T Consensus 207 kvH~~GV------~SI~s-s~~~~~~I~TGsYDe~i--~~~D------tRnm~kPl~ 248 (339)
T KOG0280|consen 207 KVHTSGV------VSIYS-SPPKPTYIATGSYDECI--RVLD------TRNMGKPLF 248 (339)
T ss_pred eeeecce------EEEec-CCCCCceEEEeccccce--eeee------hhcccCccc
Confidence 4333333 22332 33455667766653322 4555 345677764
No 92
>PRK03629 tolB translocation protein TolB; Provisional
Probab=35.57 E-value=1.9e+02 Score=32.22 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=14.5
Q ss_pred EeecceeecCCcEEEEEec
Q 043502 228 QIKSGVVSQDGERVYFCTK 246 (949)
Q Consensus 228 ~ik~gvvs~dg~~lff~~k 246 (949)
.+.+-..|+||++|.|++.
T Consensus 200 ~~~~p~wSPDG~~la~~s~ 218 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTF 218 (429)
T ss_pred ceeeeEEcCCCCEEEEEEe
Confidence 3556788999999888764
No 93
>PLN02193 nitrile-specifier protein
Probab=35.18 E-value=7.3e+02 Score=28.35 Aligned_cols=137 Identities=14% Similarity=0.249 Sum_probs=67.9
Q ss_pred cCCEEEEEecCC--CCCccccccc-cccceEEEeccCc---E-EEEEecCCCceeeeccCCCCCceeecCCCCCCCCCcc
Q 043502 593 AESVWLWLRHDH--STPMRGVLGN-YNGSLYMVDLYGS---L-LIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKA 665 (949)
Q Consensus 593 ~~~~WlWl~H~h--~T~m~g~~g~-~ngsLf~vd~~Gs---L-~~R~~~g~~~~W~n~t~mr~G~~V~~G~pwdgipG~~ 665 (949)
..+.|.-+..-. |+|..+...+ ++++||+..-... + .+-..+-..-.|.-+.. |+.. | ..--+.+
T Consensus 252 ~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~--~~~~-----~-~~R~~~~ 323 (470)
T PLN02193 252 TTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCST--PGDS-----F-SIRGGAG 323 (470)
T ss_pred CCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCC--CCCC-----C-CCCCCcE
Confidence 456676664321 5555554443 8899999865321 1 01122333456766632 1110 0 0001222
Q ss_pred eeecccCcEEEEec-CC----eEeEEEEeceeeeeecC---CCCCCcceEEeecccccccCeEEEEccC-----------
Q 043502 666 MKVTAEDALFFVSK-NG----RLLQFTVALRKFKWKDC---RHPLDTKVACIVDQELFRENIVFVVGRN----------- 726 (949)
Q Consensus 666 ~~vt~~dklF~vt~-~G----rLlq~tva~rkwkW~dh---g~PPgTkIata~d~~~~r~~~iFvvG~N----------- 726 (949)
+ +..++++|++.- +| .++.+-.. .-+|... |.+|-.....+ .++++ ++||+.|..
T Consensus 324 ~-~~~~gkiyviGG~~g~~~~dv~~yD~~--t~~W~~~~~~g~~P~~R~~~~--~~~~~-~~iyv~GG~~~~~~~~~~~~ 397 (470)
T PLN02193 324 L-EVVQGKVWVVYGFNGCEVDDVHYYDPV--QDKWTQVETFGVRPSERSVFA--SAAVG-KHIVIFGGEIAMDPLAHVGP 397 (470)
T ss_pred E-EEECCcEEEEECCCCCccCceEEEECC--CCEEEEeccCCCCCCCcceeE--EEEEC-CEEEEECCccCCccccccCc
Confidence 2 236788887632 22 34444433 3445432 44444443322 23454 467766652
Q ss_pred c----eEeeecCceeeeeecC
Q 043502 727 G----RLYQYNKVTELWHEHY 743 (949)
Q Consensus 727 G----rLYEwNg~TW~WhdHG 743 (949)
+ -+|.|+-.+..|..-.
T Consensus 398 ~~~~ndv~~~D~~t~~W~~~~ 418 (470)
T PLN02193 398 GQLTDGTFALDTETLQWERLD 418 (470)
T ss_pred cceeccEEEEEcCcCEEEEcc
Confidence 1 2667999999998654
No 94
>PHA00661 hypothetical protein
Probab=34.89 E-value=4.6e+02 Score=32.77 Aligned_cols=110 Identities=19% Similarity=0.290 Sum_probs=77.7
Q ss_pred eEEEEecCCcEEEEEee--ccceeEEEcCCCCCCcccccceeccCCccccceEEEEEcc---cceEEEEeeccCCCCCcc
Q 043502 339 SLFLLTKGGNLVERRIQ--QRKWKWIIHGSPEDTHLTSITPVQQDESNEKFFSLFLTTS---AGAVFEYQIPKYSGTSQE 413 (949)
Q Consensus 339 SLFlltk~G~LVErr~~--qrkWkWi~HGtP~~~~l~siT~v~~d~~~~~~~sLF~t~S---~G~Vyey~~~k~tg~~q~ 413 (949)
.++++-.||.|+=--+. |.-|-|=.|=+ +..+.||.-+. +..+| .||++-- +|...+| ++++.-+.+.
T Consensus 488 ivw~v~~DG~l~~lTy~req~V~aW~~h~t--~G~v~sva~i~--~g~~D--~l~~vV~R~inG~~vry-iErl~~~~~~ 560 (734)
T PHA00661 488 IVWFIRSDGKLLGLTYVPEQQVGAWHQHDT--AGVFESCAVVA--EGNED--RLYAVVRRTINGQTVRY-VERLASRLFD 560 (734)
T ss_pred EEEEEecCCcEEEEEEechhcEEeeEEeec--CCeEEEEEEec--CCCCc--eEEEEEEEeeCCEEEEE-EEEecccCCC
Confidence 48999999999988877 78899988854 56788888883 34443 4666543 5755443 6666544333
Q ss_pred ccccccccccCCCcccccccCCCCcccccceEEEEeCCCcee
Q 043502 414 NQFSGGWISHLHPPHARAARGAVGLPFQVGRTIFPLDDGRLA 455 (949)
Q Consensus 414 nq~~~~W~sh~~P~~ak~a~~~~g~pfq~grviF~L~DGRLa 455 (949)
.+-..-...++..-+...+..+.||+==||+.|--|-||.+.
T Consensus 561 ~~~~a~fvDsglsy~g~~~~~~sGL~HLEG~tV~ilaDG~v~ 602 (734)
T PHA00661 561 AQADAFFVDSGLTYSGEPTSHISGLEHLEGKTVSILADGAVH 602 (734)
T ss_pred cccceEEEecccccCCCccccccCccccCCCEEEEEecCccC
Confidence 443445566665555555677889999999999999999873
No 95
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=34.83 E-value=37 Score=26.19 Aligned_cols=16 Identities=44% Similarity=0.758 Sum_probs=14.6
Q ss_pred ceEEEEecCCceEEEE
Q 043502 814 NQLLLIGSDGKVYLRY 829 (949)
Q Consensus 814 sqLFviGSDG~LYeRy 829 (949)
++|+.+++||++|.|.
T Consensus 1 ~~VWav~~~G~v~~R~ 16 (32)
T PF06462_consen 1 DQVWAVTSDGSVYFRT 16 (32)
T ss_pred CeEEEEcCCCCEEEEC
Confidence 5799999999999996
No 96
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=33.94 E-value=63 Score=23.13 Aligned_cols=28 Identities=14% Similarity=0.405 Sum_probs=23.8
Q ss_pred ccCcEEEEecCCeEeEEEEeceeeeeec
Q 043502 670 AEDALFFVSKNGRLLQFTVALRKFKWKD 697 (949)
Q Consensus 670 ~~dklF~vt~~GrLlq~tva~rkwkW~d 697 (949)
.++.+|+.+.+|.|+-+-...++..|+.
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 4558999999999999888888888863
No 97
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=33.79 E-value=74 Score=34.79 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=32.1
Q ss_pred CcEEEEecCCeEeE-----EEEeceeeeeecCCCCCCcceEEeeccccc-ccCeEEEEccCceEee
Q 043502 672 DALFFVSKNGRLLQ-----FTVALRKFKWKDCRHPLDTKVACIVDQELF-RENIVFVVGRNGRLYQ 731 (949)
Q Consensus 672 dklF~vt~~GrLlq-----~tva~rkwkW~dhg~PPgTkIata~d~~~~-r~~~iFvvG~NGrLYE 731 (949)
+-|.++|++|.+|= |++. .+ ..-+.-| +.-+.....- -+-+|||.+|||++|-
T Consensus 196 scLViGTE~~~i~iLd~~af~il-~~--~~lpsvP----v~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTIL-KQ--VQLPSVP----VFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred ceEEEEecCCeEEEECchhheeE-EE--EecCCCc----eEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 45788899998885 3322 22 2223333 3222223332 5779999999999994
No 98
>PRK00178 tolB translocation protein TolB; Provisional
Probab=33.49 E-value=4.2e+02 Score=28.97 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=12.6
Q ss_pred cceeecCCcEEEEE-ecCC
Q 043502 231 SGVVSQDGERVYFC-TKNG 248 (949)
Q Consensus 231 ~gvvs~dg~~lff~-~knG 248 (949)
+-..|+||++|+|. +++|
T Consensus 247 ~~~~SpDG~~la~~~~~~g 265 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDG 265 (430)
T ss_pred CeEECCCCCEEEEEEccCC
Confidence 34678999998875 4455
No 99
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=33.41 E-value=4.2e+02 Score=29.31 Aligned_cols=104 Identities=19% Similarity=0.310 Sum_probs=67.9
Q ss_pred eeecccCcEEEEecCCe----------EeEEE---------EeceeeeeecCCCCCCcceEE-----eecccccccCeEE
Q 043502 666 MKVTAEDALFFVSKNGR----------LLQFT---------VALRKFKWKDCRHPLDTKVAC-----IVDQELFRENIVF 721 (949)
Q Consensus 666 ~~vt~~dklF~vt~~Gr----------Llq~t---------va~rkwkW~dhg~PPgTkIat-----a~d~~~~r~~~iF 721 (949)
+-|+..|+||+-+.... -+|.. -....|.|+..=.||=..-.. +..=++..+.+||
T Consensus 112 isv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~ 191 (342)
T PF07893_consen 112 ISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIF 191 (342)
T ss_pred EEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEE
Confidence 44566888998876632 34433 246789999977776433221 2222333788999
Q ss_pred EEccCc--eEeeecCceeeeeecCCCCceeeecCCCceecCCCCCCcceEEEEecCC
Q 043502 722 VVGRNG--RLYQYNKVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDG 776 (949)
Q Consensus 722 vvG~NG--rLYEwNg~TW~WhdHGkP~~t~ls~~pGtAM~psk~sl~gslFm~~snG 776 (949)
|+..+. --|-++-.+..|..|| .|...+-|-|--.. .| .-||.++.++
T Consensus 192 vS~~~~~~GTysfDt~~~~W~~~G----dW~LPF~G~a~y~~--el-~~W~Gls~~~ 241 (342)
T PF07893_consen 192 VSVNGRRWGTYSFDTESHEWRKHG----DWMLPFHGQAEYVP--EL-DLWFGLSSDG 241 (342)
T ss_pred EEecCCceEEEEEEcCCcceeecc----ceecCcCCccEECC--Cc-CeEEEeccCC
Confidence 977654 4788887888899995 56666777665432 12 3588888877
No 100
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=32.77 E-value=4.5e+02 Score=32.57 Aligned_cols=118 Identities=14% Similarity=0.227 Sum_probs=61.1
Q ss_pred EEEEEEece--eeehhccCceEEEecCCCCcceEEEee-ccccccccccccccceeEeecceeec---CCcEEEEEecCC
Q 043502 175 ISVFIVNQR--ILALAEAGVLYQMQLGDNSQPIWVEFI-PAIDQSINGEAEQRSVIQIKSGVVSQ---DGERVYFCTKNG 248 (949)
Q Consensus 175 i~vfivn~t--ilalseag~lyqmql~e~sqpiw~ef~-~~~~~~~~~~~~qs~~~~ik~gvvs~---dg~~lff~~knG 248 (949)
+.++.+|.. ||.+|..|..|.+...|-..-=+...- |-..-+.+++.++=.++.+ +.. |...|+|+|++|
T Consensus 534 v~v~~~~~~d~IllfT~~Gkv~r~~~~eIp~~gr~a~Gv~Ivk~i~L~~~D~Iv~~~~----v~~~~~~~~~ll~vT~~G 609 (738)
T TIGR01061 534 FAQTIANTTDQILIFTSLGNIINIPVHKLADIRWKDLGEHLSNKITFDENETIVFVGT----MNEFDVDQPILVLASKLG 609 (738)
T ss_pred EEEEEecCCCEEEEEeCCCcEEEEEHHHCcCCCCCCCCcChhhcccCCCCCeEEEEEE----eccccCCCcEEEEEecCC
Confidence 456666654 999999999999976542111111100 0001111222222111111 221 224699999999
Q ss_pred ceeEe--eccCCCccccCC------CCCCCceeEEeeccccCCceEEEEccCCceeeecc
Q 043502 249 LLLEL--SEVEPPRWLNHG------RPPGANVAAIADAGNVRPEVVYTISSTGDLYEYDR 300 (949)
Q Consensus 249 ~LLe~--tel~p~rW~~hg------~PPga~VA~I~D~~~~R~~vVftiss~GdLYeYnr 300 (949)
..-.+ +|.+..| .-.| .+.|--|++++-.+ .+-|+.++++|.+..|+-
T Consensus 610 ~~KRt~l~e~~~~r-~~kGv~~ikLk~~d~lV~a~~v~~---~d~IlliT~~G~~iRf~~ 665 (738)
T TIGR01061 610 MVKRIELTELNIKR-NSKATLCIKLKDKDHLISAFLQQK---DKLICLVSDLGYALVFHT 665 (738)
T ss_pred eEEEeEHHHhcccc-CCCceEEEeccCCCcEEEEEEeCC---CCEEEEEECCCeEEEEEH
Confidence 55444 4665544 1112 12233344433222 356889999999999874
No 101
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=32.40 E-value=2.1e+02 Score=32.60 Aligned_cols=136 Identities=13% Similarity=0.146 Sum_probs=63.4
Q ss_pred ccCCCccccCCeEEEEEE-eceeeehhccCceEEEecCCCCcceEEEeeccccc---------cccccccccceeEeecc
Q 043502 163 APHDLPISAGPAISVFIV-NQRILALAEAGVLYQMQLGDNSQPIWVEFIPAIDQ---------SINGEAEQRSVIQIKSG 232 (949)
Q Consensus 163 aphdlp~s~g~ai~vfiv-n~tilalseag~lyqmql~e~sqpiw~ef~~~~~~---------~~~~~~~qs~~~~ik~g 232 (949)
-||.+-+..|.+++---= .-.|.++.++|.||-+.|.-...-- |....++ ....-..+. -+..-.
T Consensus 78 Fp~~~~~~~~v~~~~~~~~~~~v~v~t~s~~~~~l~l~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~ 152 (547)
T PF11715_consen 78 FPSPIILPGCVAFSETEDHVLIVFVTTSSGHLYTLTLPSDFFRS---FSDLSEDNFEDWCRSYVPYSFSFRS--PHRLAA 152 (547)
T ss_dssp -SS-BTT-GGGGEEEEE-SEEEEEEEBTTS-EEEEEEEHHHHHS------S---S--S-EE-B-SS-TTTS---EEEEEE
T ss_pred CCCcCeeCCeEEEEECCCCEEEEEEEeCCCEEEEEECCChhhcc---ccccccccccCccEeeeCCCCCccC--CCeEEE
Confidence 466555444444432221 2246688999999999764321100 1110000 000001111 122222
Q ss_pred eeecCCcEEEEEecCCceeEeecc----CCCccc----------------------cCCCCCCCceeEEeecccc-CCce
Q 043502 233 VVSQDGERVYFCTKNGLLLELSEV----EPPRWL----------------------NHGRPPGANVAAIADAGNV-RPEV 285 (949)
Q Consensus 233 vvs~dg~~lff~~knG~LLe~tel----~p~rW~----------------------~hg~PPga~VA~I~D~~~~-R~~v 285 (949)
+...+...+.+..++|.||-|.-- ..-.|. .-..++++-++..++...+ -..+
T Consensus 153 ~~~~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (547)
T PF11715_consen 153 VTHDSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTF 232 (547)
T ss_dssp E---SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTE
T ss_pred EEecCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCE
Confidence 222477788888899999888711 111221 2233455556666666444 7799
Q ss_pred EEEEccCCceeeeccCCc
Q 043502 286 VYTISSTGDLYEYDRISK 303 (949)
Q Consensus 286 Vftiss~GdLYeYnr~tk 303 (949)
|||+++++.|=-.|-.|.
T Consensus 233 l~tl~~D~~LRiW~l~t~ 250 (547)
T PF11715_consen 233 LFTLSRDHTLRIWSLETG 250 (547)
T ss_dssp EEEEETTSEEEEEETTTT
T ss_pred EEEEeCCCeEEEEECCCC
Confidence 999999999988887776
No 102
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=32.34 E-value=7.7e+02 Score=29.67 Aligned_cols=172 Identities=16% Similarity=0.166 Sum_probs=94.0
Q ss_pred ccccCCCccccccc------eEEE---EecCceEEEEeeCCeeEEE----EecCCEEEEEecCC----CCCcccc-----
Q 043502 554 EEYSLPDNWINNYF------RLRV---MHGSRSFFLITDGGFTFEY----LYAESVWLWLRHDH----STPMRGV----- 611 (949)
Q Consensus 554 e~y~~~~~~i~~nf------~~rv---mh~~~s~fliTd~G~~fE~----~~~~~~WlWl~H~h----~T~m~g~----- 611 (949)
+-|+.+...-++-+ |+|| .=++...-.+|+||+.|+. ......|.-=.--. .|||+=-
T Consensus 155 ~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~~~~i~ 234 (476)
T COG5184 155 DDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIV 234 (476)
T ss_pred chhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecCchhee
Confidence 44444444444555 5444 3456777889999998874 33334441111111 2333311
Q ss_pred -ccccccceEEEeccCcEEEEEecCCCceeeeccCCCCCceeecC---CCCCCCCCccee----ecccCcEEEEecCCeE
Q 043502 612 -LGNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIGG---PPWDGITGKAMK----VTAEDALFFVSKNGRL 683 (949)
Q Consensus 612 -~g~~ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G~~V~~G---~pwdgipG~~~~----vt~~dklF~vt~~GrL 683 (949)
+++=-..+++++-.|+++ +|-|....+=|+.+..- .+-.|=|...+. +--.+-+|.++++|++
T Consensus 235 qla~G~dh~i~lt~~G~vy---------~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i 305 (476)
T COG5184 235 QLAAGADHLIALTNEGKVY---------GWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEI 305 (476)
T ss_pred eeccCCceEEEEecCCcEE---------EecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeE
Confidence 111223677777777776 56666555555432211 111222333321 1346778999999999
Q ss_pred eEEEEe------ce------eeeeecCCCCCCcceEEeecccccccCeEEEEccCceEeeecCce
Q 043502 684 LQFTVA------LR------KFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQYNKVT 736 (949)
Q Consensus 684 lq~tva------~r------kwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~NGrLYEwNg~T 736 (949)
|.+-|. .. +.+|+.+-.=+..++.. .+-.+.....|..-.||.||++.+..
T Consensus 306 ~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i--~~is~ge~H~l~L~~~G~l~a~Gr~~ 368 (476)
T COG5184 306 YAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTI--CSISAGESHSLILRKDGTLYAFGRGD 368 (476)
T ss_pred EEeccchhcccccCcccccceeeccccccccCCCceE--EEEecCcceEEEEecCceEEEecCCc
Confidence 987662 11 35565555444444222 24455566788889999999976654
No 103
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=32.12 E-value=38 Score=25.86 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=17.8
Q ss_pred ccCCceEEEEccCCceeeeccCC
Q 043502 280 NVRPEVVYTISSTGDLYEYDRIS 302 (949)
Q Consensus 280 ~~R~~vVftiss~GdLYeYnr~t 302 (949)
.+-.+.||+.+.+|.||-+|..|
T Consensus 18 ~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 18 AVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp EECTSEEEEE-TTSEEEEEETT-
T ss_pred EEECCEEEEEcCCCEEEEEeCCC
Confidence 34458899999999999999865
No 104
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=31.85 E-value=6e+02 Score=34.73 Aligned_cols=207 Identities=22% Similarity=0.259 Sum_probs=110.1
Q ss_pred EEEeeCCeeEEEEecCCEEEEEecCCCCCccccccccccceEEEeccCcEEEEEecCCCceeeeccCC-CCCceeecCCC
Q 043502 579 FLITDGGFTFEYLYAESVWLWLRHDHSTPMRGVLGNYNGSLYMVDLYGSLLIRERSSNELAWINCTAM-RKGRQVIGGPP 657 (949)
Q Consensus 579 fliTd~G~~fE~~~~~~~WlWl~H~h~T~m~g~~g~~ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~m-r~G~~V~~G~p 657 (949)
+|.-.+|++|---=+++.-.=||--.|+.+. .|+-..++=|.-.+|++++-+ +. |-.++ .||+-.+.=
T Consensus 296 ~LLd~~G~L~~l~q~d~~~~~l~sS~~~~~~--~~~~~~sv~l~~~~~~i~~~~--~~-----~~~~~~~PgkaH~A~-- 364 (1774)
T PF11725_consen 296 QLLDNKGHLFHLQQDDSSLSVLHSSKPTQAP--SGSKPPSVRLERDDGHIHIDT--GV-----NRKALNLPGKAHIAH-- 364 (1774)
T ss_pred eeecCCCcEEEEEecCCceEEEecCCcccCC--CCCCCCceeeeccCCcEEecc--CC-----CccccCCCcHHHHHH--
Confidence 3444445555555555566678888888777 788889999999999999861 11 11111 234432211
Q ss_pred CCCCCCcceeecccCcEEEEecCCeEeEEEEeceeeeeecCCCCCCcceEEeecccccccCeEEEEccCceEeeecCcee
Q 043502 658 WDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQYNKVTE 737 (949)
Q Consensus 658 wdgipG~~~~vt~~dklF~vt~~GrLlq~tva~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~NGrLYEwNg~TW 737 (949)
|.|+.+ +.++..+=+ -+++||||--.+. +|+- ||+.. .+ .| .-...+.||+||- +.-.
T Consensus 365 ---LTgv~~--~~~ge~lRl-Hd~~LY~~d~~~~--~Wk~---~~~~~-d~-----~~---S~Ls~qgdG~lYA--k~~~ 422 (1774)
T PF11725_consen 365 ---LTGVHT--DPDGEQLRL-HDDRLYQFDPNTA--RWKP---PPDKS-DT-----PF---SSLSRQGDGKLYA--KDDD 422 (1774)
T ss_pred ---hhcccc--CCCCCeEEe-ecCceeeeccccc--eecC---CCCcc-cc-----hh---hhhcccCCCceEe--cCCC
Confidence 233333 334444333 5678888765544 5654 33332 22 22 1235678999987 5545
Q ss_pred eeeecCCCC--ceee--------ecCCCce-ecCCCCCCc-ceEEEEecCCCeEEEEEeCCCCeEEeecCCCCCCceeec
Q 043502 738 LWHEHYQSQ--HLVL--------SILPGTA-MRPPSASLT-GSLFMLSEDGGLVEYHWNTWDGWNWVEHGTPGKGVTLVG 805 (949)
Q Consensus 738 ~WhdHGkP~--~t~l--------s~~pGtA-M~psk~sl~-gslFm~~snG~LyEr~Wntg~gW~WVdHGtP~~gvtvv~ 805 (949)
+=+++.-+. +..+ +. -|+| |-..+-+-+ --++|-..+|.+-.+.--.- =.+.|+| ...-|+
T Consensus 423 ~l~nLSs~~~~~~~v~~l~sfSv~~-~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L----~L~dG~a--~A~~Vg 495 (1774)
T PF11725_consen 423 TLVNLSSGQMSEAEVDKLKSFSVAP-DGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTL----QLADGKA--QAQSVG 495 (1774)
T ss_pred ceeecCCCCcchhhhhhcccccccC-CCceeeeecCCCcceeeeccCccccccCccceeee----eccCCch--hhhhee
Confidence 555555332 2221 11 2333 332232233 14566666666554221000 0122777 233333
Q ss_pred CCCCcccCceEEEEecCCceEEEEE
Q 043502 806 SPGPCLHGNQLLLIGSDGKVYLRYM 830 (949)
Q Consensus 806 spG~sf~gsqLFviGSDG~LYeRyw 830 (949)
- .+++|||..++|+||---.
T Consensus 496 L-----s~drLFvADseGkLYsa~l 515 (1774)
T PF11725_consen 496 L-----SNDRLFVADSEGKLYSADL 515 (1774)
T ss_pred e-----cCCeEEEEeCCCCEEeccc
Confidence 3 3479999999999996443
No 105
>PRK04922 tolB translocation protein TolB; Provisional
Probab=30.91 E-value=7.8e+02 Score=27.40 Aligned_cols=18 Identities=28% Similarity=0.577 Sum_probs=11.9
Q ss_pred cceeecCCcEEEEE-ecCC
Q 043502 231 SGVVSQDGERVYFC-TKNG 248 (949)
Q Consensus 231 ~gvvs~dg~~lff~-~knG 248 (949)
+..+|.||++|+|. +++|
T Consensus 252 ~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDG 270 (433)
T ss_pred CceECCCCCEEEEEEeCCC
Confidence 34678888888765 4444
No 106
>PHA03098 kelch-like protein; Provisional
Probab=30.80 E-value=8.4e+02 Score=27.71 Aligned_cols=116 Identities=17% Similarity=0.305 Sum_probs=64.9
Q ss_pred cccccceEEEeccCc-----EEEEEecCCCceeeeccCCCCCceeecCCCCCCCCCcceeecccCcEEEEec---CCeEe
Q 043502 613 GNYNGSLYMVDLYGS-----LLIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSK---NGRLL 684 (949)
Q Consensus 613 g~~ngsLf~vd~~Gs-----L~~R~~~g~~~~W~n~t~mr~G~~V~~G~pwdgipG~~~~vt~~dklF~vt~---~GrLl 684 (949)
.+++|+||+++-.+. -.+++ +-..-.|.....|+..+. +.+. +..++++|+.+- ++..+
T Consensus 339 ~~~~~~lyv~GG~~~~~~~~~v~~y-d~~~~~W~~~~~lp~~r~-----------~~~~-~~~~~~iYv~GG~~~~~~~~ 405 (534)
T PHA03098 339 TVFNNRIYVIGGIYNSISLNTVESW-KPGESKWREEPPLIFPRY-----------NPCV-VNVNNLIYVIGGISKNDELL 405 (534)
T ss_pred EEECCEEEEEeCCCCCEecceEEEE-cCCCCceeeCCCcCcCCc-----------cceE-EEECCEEEEECCcCCCCccc
Confidence 348999999876541 12232 334556777766665432 1122 346889999753 33222
Q ss_pred E--EEEeceeeeeecCCCCCCcceEEeecccccccCeEEEEccCc---------eEeeecCceeeeeecCC
Q 043502 685 Q--FTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNG---------RLYQYNKVTELWHEHYQ 744 (949)
Q Consensus 685 q--~tva~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~NG---------rLYEwNg~TW~WhdHGk 744 (949)
. .......-+|......|-..-..+ ....+++||+.|... .+|.|+-.+..|..=..
T Consensus 406 ~~v~~yd~~t~~W~~~~~~p~~r~~~~---~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 473 (534)
T PHA03098 406 KTVECFSLNTNKWSKGSPLPISHYGGC---AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS 473 (534)
T ss_pred ceEEEEeCCCCeeeecCCCCccccCce---EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC
Confidence 1 112444556776655443332221 223356888887421 27779999999987543
No 107
>smart00602 VPS10 VPS10 domain.
Probab=30.68 E-value=1e+03 Score=28.60 Aligned_cols=108 Identities=15% Similarity=0.143 Sum_probs=53.7
Q ss_pred ccCcEEEEecCC--eEeEEEEeceeeeeecCCCCCCcceE-----EeecccccccCeEEEE------ccCceEee--ecC
Q 043502 670 AEDALFFVSKNG--RLLQFTVALRKFKWKDCRHPLDTKVA-----CIVDQELFRENIVFVV------GRNGRLYQ--YNK 734 (949)
Q Consensus 670 ~~dklF~vt~~G--rLlq~tva~rkwkW~dhg~PPgTkIa-----ta~d~~~~r~~~iFvv------G~NGrLYE--wNg 734 (949)
+++-+|+...+- .-+...|.....+|.....|.++.|. +++|. ..+.||+. +.-|.||. -+|
T Consensus 177 ~~~yl~va~~~~~~~~~~l~VS~Dg~~f~~a~~P~~~~i~~~~~ytilds---s~~~vfl~V~~~~~~~~g~ly~Sds~G 253 (612)
T smart00602 177 TDEYLFVAVTDEDTTSRKLYVSNDRSTFAMAKFPKYHALGKQQAYTILDS---DEDSVFLHVSENNQNDTGNLYISDSRG 253 (612)
T ss_pred EccEEEEEEecCCCCeEEEEEECCCCcceEEeCCCCcccCccccEEEEec---CCCcEEEEEecCCCCceeEEEEECCCC
Confidence 555556544321 22456666656689888888775554 33322 34456666 56666776 233
Q ss_pred ceee---eeecCCCCce----eeecCCCceecCCCC--CCcceEEEEecCCCeEE
Q 043502 735 VTEL---WHEHYQSQHL----VLSILPGTAMRPPSA--SLTGSLFMLSEDGGLVE 780 (949)
Q Consensus 735 ~TW~---WhdHGkP~~t----~ls~~pGtAM~psk~--sl~gslFm~~snG~LyE 780 (949)
..-+ ++-.....+. -+.-..|+.+++-.. ....+..+.-.||+-++
T Consensus 254 ~~F~~sl~~~~~~~~g~vDf~kv~~l~Gv~ian~~~~~~~~~~t~ITfd~G~~W~ 308 (612)
T smart00602 254 TKFSLSLENVNRYTGGYIDFYKVEGLKGIYIANIVSKVDKQLQTKITFDKGGDWS 308 (612)
T ss_pred CEEEEehhhhccCCCceeeEEEecCcceEEEEEEecccccceEEEEEecCCCceE
Confidence 2222 3333333332 244457787776332 12223444444444444
No 108
>PRK01029 tolB translocation protein TolB; Provisional
Probab=29.59 E-value=2.6e+02 Score=31.51 Aligned_cols=17 Identities=35% Similarity=0.671 Sum_probs=13.2
Q ss_pred ceeecCCcEEEEEec-CC
Q 043502 232 GVVSQDGERVYFCTK-NG 248 (949)
Q Consensus 232 gvvs~dg~~lff~~k-nG 248 (949)
-..|.||++|+|+.. +|
T Consensus 286 p~wSPDG~~Laf~s~~~g 303 (428)
T PRK01029 286 PSFSPDGTRLVFVSNKDG 303 (428)
T ss_pred eEECCCCCEEEEEECCCC
Confidence 368999999998874 44
No 109
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=28.29 E-value=1.1e+02 Score=35.15 Aligned_cols=65 Identities=28% Similarity=0.351 Sum_probs=47.6
Q ss_pred cEEEEEecCCceeEee----ccCCCccccCCCCCCCceeEEeeccc--cCCceEEEEc---cCCceeeeccCCc
Q 043502 239 ERVYFCTKNGLLLELS----EVEPPRWLNHGRPPGANVAAIADAGN--VRPEVVYTIS---STGDLYEYDRISK 303 (949)
Q Consensus 239 ~~lff~~knG~LLe~t----el~p~rW~~hg~PPga~VA~I~D~~~--~R~~vVftis---s~GdLYeYnr~tk 303 (949)
+=|+-++-.|.+.|.. +=+|+|-.|---=-...|-++.|... =|++++|.+- .+|||+.||+.||
T Consensus 136 lGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK 209 (376)
T KOG1520|consen 136 LGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTK 209 (376)
T ss_pred eeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCccc
Confidence 4456666777776654 46778877765433377888988876 3568998874 6799999999999
No 110
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=27.41 E-value=2e+02 Score=27.90 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=42.9
Q ss_pred eccccccccccccccceeEeecceeecCCcEEEEEecC---CceeEeeccCCCccccCCC---CCCCceeEEeec
Q 043502 210 IPAIDQSINGEAEQRSVIQIKSGVVSQDGERVYFCTKN---GLLLELSEVEPPRWLNHGR---PPGANVAAIADA 278 (949)
Q Consensus 210 ~~~~~~~~~~~~~qs~~~~ik~gvvs~dg~~lff~~kn---G~LLe~tel~p~rW~~hg~---PPga~VA~I~D~ 278 (949)
.+++--+.-+..+.+..|.|-.|.+..+-..-|+++.+ |.|+.+ +|+|+++-- +|..-+..|.=|
T Consensus 16 ~g~~~vsL~G~~g~s~~~~i~~g~l~pg~tys~li~~d~dvG~l~~V----kf~W~~~~~n~~~p~~~~~~I~Vq 86 (113)
T cd01759 16 TGTILVSLYGNKGNTRQYEIFKGTLKPGNTYSAFIDVDVDVGPLTKV----KFIWNNNVINITLPKVGAEKITVQ 86 (113)
T ss_pred CceEEEEEEcCCCCccceEEEeeeecCCCEEEEEEEccCCCCCEEEE----EEEEeCCccCCCCCeEEEEEEEEE
Confidence 34433344466777888899999999999999999655 555544 577766533 344456666544
No 111
>PRK01742 tolB translocation protein TolB; Provisional
Probab=27.33 E-value=9e+02 Score=26.96 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=13.5
Q ss_pred eecceeecCCcEEEEEecC
Q 043502 229 IKSGVVSQDGERVYFCTKN 247 (949)
Q Consensus 229 ik~gvvs~dg~~lff~~kn 247 (949)
+.+=..|+||++|.|+..+
T Consensus 206 v~~p~wSPDG~~la~~s~~ 224 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFE 224 (429)
T ss_pred cccceEcCCCCEEEEEEec
Confidence 3455678899888887643
No 112
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.55 E-value=1.4e+02 Score=31.01 Aligned_cols=92 Identities=25% Similarity=0.367 Sum_probs=0.0
Q ss_pred ccccCCeEEEEEEece-eeehhccCceEEEecCCCCcceEE-EeeccccccccccccccceeEeecceeecCCcEEEEEe
Q 043502 168 PISAGPAISVFIVNQR-ILALAEAGVLYQMQLGDNSQPIWV-EFIPAIDQSINGEAEQRSVIQIKSGVVSQDGERVYFCT 245 (949)
Q Consensus 168 p~s~g~ai~vfivn~t-ilalseag~lyqmql~e~sqpiw~-ef~~~~~~~~~~~~~qs~~~~ik~gvvs~dg~~lff~~ 245 (949)
||..|+.++.+..+.. ++||++.|.||=-.+....-.+=- .+.|-++... -+.. ......+-+.++
T Consensus 8 ~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~-~~~~-----------~~~~~i~~~~lt 75 (219)
T PF07569_consen 8 PIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP-VSDK-----------SSSPNITSCSLT 75 (219)
T ss_pred cEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc-cccC-----------CCCCcEEEEEEc
Q ss_pred cCCceeEeeccCCCccccCCCCCCCceeEEeeccccCCceEEEEccCCceeeeccCCchhhhh
Q 043502 246 KNGLLLELSEVEPPRWLNHGRPPGANVAAIADAGNVRPEVVYTISSTGDLYEYDRISKPSWRK 308 (949)
Q Consensus 246 knG~LLe~tel~p~rW~~hg~PPga~VA~I~D~~~~R~~vVftiss~GdLYeYnr~tkpsW~k 308 (949)
++|..|-.. +||+-|.||+.-+ .|-+
T Consensus 76 ~~G~PiV~l------------------------------------sng~~y~y~~~L~-~W~~ 101 (219)
T PF07569_consen 76 SNGVPIVTL------------------------------------SNGDSYSYSPDLG-CWIR 101 (219)
T ss_pred CCCCEEEEE------------------------------------eCCCEEEeccccc-eeEE
No 113
>PLN02153 epithiospecifier protein
Probab=26.07 E-value=8.4e+02 Score=26.14 Aligned_cols=141 Identities=17% Similarity=0.301 Sum_probs=64.9
Q ss_pred ecccCcEEEEecC---C---eEeEEEEeceeeeeecCCCC-----CCcceEEeecccccccCeEEEEcc-C--c------
Q 043502 668 VTAEDALFFVSKN---G---RLLQFTVALRKFKWKDCRHP-----LDTKVACIVDQELFRENIVFVVGR-N--G------ 727 (949)
Q Consensus 668 vt~~dklF~vt~~---G---rLlq~tva~rkwkW~dhg~P-----PgTkIata~d~~~~r~~~iFvvG~-N--G------ 727 (949)
|..++++|+..-. + .++.+ .+...+|...-.. |-.....+ +..+ +++|||.|. + |
T Consensus 82 ~~~~~~iyv~GG~~~~~~~~~v~~y--d~~t~~W~~~~~~~~~~~p~~R~~~~--~~~~-~~~iyv~GG~~~~~~~~~~~ 156 (341)
T PLN02153 82 VAVGTKLYIFGGRDEKREFSDFYSY--DTVKNEWTFLTKLDEEGGPEARTFHS--MASD-ENHVYVFGGVSKGGLMKTPE 156 (341)
T ss_pred EEECCEEEEECCCCCCCccCcEEEE--ECCCCEEEEeccCCCCCCCCCceeeE--EEEE-CCEEEEECCccCCCccCCCc
Confidence 5568889887431 1 23333 4445566543221 21122111 2344 457777765 2 2
Q ss_pred ---eEeeecCceeeeeecCCCCceeeecCCCceecCCCCCCcceEEEEecC-------C------CeEEEEEeCCCCeEE
Q 043502 728 ---RLYQYNKVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSED-------G------GLVEYHWNTWDGWNW 791 (949)
Q Consensus 728 ---rLYEwNg~TW~WhdHGkP~~t~ls~~pGtAM~psk~sl~gslFm~~sn-------G------~LyEr~Wntg~gW~W 791 (949)
.++.|+-.+..|..--. .......-.++++. .+.+++|+.+.- | .-.|.|=-....|.=
T Consensus 157 ~~~~v~~yd~~~~~W~~l~~-~~~~~~~r~~~~~~----~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~ 231 (341)
T PLN02153 157 RFRTIEAYNIADGKWVQLPD-PGENFEKRGGAGFA----VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTE 231 (341)
T ss_pred ccceEEEEECCCCeEeeCCC-CCCCCCCCCcceEE----EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEe
Confidence 25558888888875321 11111111222222 134567775421 1 112333222345664
Q ss_pred ee-cCC-CCCCceeecCCCCcccCceEEEEecC
Q 043502 792 VE-HGT-PGKGVTLVGSPGPCLHGNQLLLIGSD 822 (949)
Q Consensus 792 Vd-HGt-P~~gvtvv~spG~sf~gsqLFviGSD 822 (949)
+. .|. |. +.. .-+.+..+++|||+|..
T Consensus 232 ~~~~g~~P~-~r~---~~~~~~~~~~iyv~GG~ 260 (341)
T PLN02153 232 VETTGAKPS-ARS---VFAHAVVGKYIIIFGGE 260 (341)
T ss_pred ccccCCCCC-Ccc---eeeeEEECCEEEEECcc
Confidence 43 343 32 211 12234568999999994
No 114
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=25.99 E-value=9.4e+02 Score=26.69 Aligned_cols=120 Identities=16% Similarity=0.267 Sum_probs=69.2
Q ss_pred ccCcEEEEecCCeEeEEEEeceeee-eecCCCCCCcceEEeecccccccCeEEEEccCce----------Eee---e---
Q 043502 670 AEDALFFVSKNGRLLQFTVALRKFK-WKDCRHPLDTKVACIVDQELFRENIVFVVGRNGR----------LYQ---Y--- 732 (949)
Q Consensus 670 ~~dklF~vt~~GrLlq~tva~rkwk-W~dhg~PPgTkIata~d~~~~r~~~iFvvG~NGr----------LYE---w--- 732 (949)
.++|++.++..|+.+-+=..+++.. +=....|..--|..++ +++||+-.+.-. -+| |
T Consensus 75 ~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~pk~~pisv~V------G~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~ 148 (342)
T PF07893_consen 75 HGSKIVAVDQSGRTLVYDTDTRAVATGPRLHSPKRCPISVSV------GDKLYAMDRSPFPEPAGRPDFPCFEALVYRPP 148 (342)
T ss_pred cCCeEEEEcCCCCeEEEECCCCeEeccCCCCCCCcceEEEEe------CCeEEEeeccCccccccCccceeEEEeccccc
Confidence 4899999999999888777777776 1111122222232222 455777665421 344 3
Q ss_pred -----cCceeeeeecCCCCceeeec-----CCCceecCCCCCCcceEEEEecCCCeEEEEEeCCCCeEEeecCC---CCC
Q 043502 733 -----NKVTELWHEHYQSQHLVLSI-----LPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWDGWNWVEHGT---PGK 799 (949)
Q Consensus 733 -----Ng~TW~WhdHGkP~~t~ls~-----~pGtAM~psk~sl~gslFm~~snG~LyEr~Wntg~gW~WVdHGt---P~~ 799 (949)
....|.|...=.||-....+ ...-|.+ -+..|||-.....-=.|-+++.+. .|..||. |+.
T Consensus 149 ~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv-----~g~~I~vS~~~~~~GTysfDt~~~-~W~~~GdW~LPF~ 222 (342)
T PF07893_consen 149 PDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVV-----DGRTIFVSVNGRRWGTYSFDTESH-EWRKHGDWMLPFH 222 (342)
T ss_pred cccccCCCcceEEcCCCCCccccCCcccceEEEEEEe-----cCCeEEEEecCCceEEEEEEcCCc-ceeeccceecCcC
Confidence 36788899866666222111 1122222 134677755543112677887765 8999995 997
Q ss_pred Cc
Q 043502 800 GV 801 (949)
Q Consensus 800 gv 801 (949)
|-
T Consensus 223 G~ 224 (342)
T PF07893_consen 223 GQ 224 (342)
T ss_pred Cc
Confidence 63
No 115
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=25.91 E-value=7.6e+02 Score=30.68 Aligned_cols=144 Identities=17% Similarity=0.231 Sum_probs=84.9
Q ss_pred cceEEEeccCcEEEEEe----cCCCceeeeccCCCCCceeecCCCCCCCC-CcceeecccCcEEEEecCCeEeEEEEec-
Q 043502 617 GSLYMVDLYGSLLIRER----SSNELAWINCTAMRKGRQVIGGPPWDGIT-GKAMKVTAEDALFFVSKNGRLLQFTVAL- 690 (949)
Q Consensus 617 gsLf~vd~~GsL~~R~~----~g~~~~W~n~t~mr~G~~V~~G~pwdgip-G~~~~vt~~dklF~vt~~GrLlq~tva~- 690 (949)
-.+|....+|.|++|.= +-...+|---+.-.+-.|+-.| | |..+-||.+.++|+ ++=..
T Consensus 193 ~~awAI~s~Gd~y~RtGvs~~~P~GraW~~i~~~t~L~qISag------Ptg~VwAvt~nG~vf~---------R~GVsR 257 (705)
T KOG3669|consen 193 DTAWAIRSSGDLYLRTGVSVDRPCGRAWKVICPYTDLSQISAG------PTGVVWAVTENGAVFY---------REGVSR 257 (705)
T ss_pred eEEEEEecCCcEEEeccccCCCCCCceeeecCCCCccceEeec------CcceEEEEeeCCcEEE---------Eecccc
Confidence 36789999999999974 3456778766666777888888 5 77776666555554 44333
Q ss_pred ---eeeeeecCCCCCCcc-eEEeecccccccCeEEEEccCceEee---ecC---ceeeeeecCCCCceeeecCCCceecC
Q 043502 691 ---RKFKWKDCRHPLDTK-VACIVDQELFRENIVFVVGRNGRLYQ---YNK---VTELWHEHYQSQHLVLSILPGTAMRP 760 (949)
Q Consensus 691 ---rkwkW~dhg~PPgTk-Iata~d~~~~r~~~iFvvG~NGrLYE---wNg---~TW~WhdHGkP~~t~ls~~pGtAM~p 760 (949)
-...|+|--.|-+.- +..| .+.+. .+.....+|+|.= .-+ -...||+--..-...+-+-.++.|+.
T Consensus 258 qNp~GdsWkdI~tP~~a~~~v~i---SvGt~-t~Waldndg~lwfrrgii~~kpeg~h~~e~~~s~~~~v~tdq~isf~S 333 (705)
T KOG3669|consen 258 QNPEGDSWKDIVTPRQALEPVCI---SVGTQ-TLWALDNDGNLWFRRGIISKKPEGDHDHEWQVSITDYVVTDQCISFQS 333 (705)
T ss_pred cCCCCchhhhccCcccccceEEE---Eeccc-eEEEEecCCcEEEEecccccCcccccccccccccccceEEecceeeEE
Confidence 346788888886655 3333 23333 6677777777644 111 12223333222222222223344431
Q ss_pred CCCCCcceEEEEecCCCeEEE
Q 043502 761 PSASLTGSLFMLSEDGGLVEY 781 (949)
Q Consensus 761 sk~sl~gslFm~~snG~LyEr 781 (949)
..-..-.|..+.++.+|-|
T Consensus 334 --V~~ndqVfaisa~~~i~~R 352 (705)
T KOG3669|consen 334 --VIHNDQVFAISAQAKIEVR 352 (705)
T ss_pred --EEecceEEEEecccceeee
Confidence 2233459999999988654
No 116
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=25.33 E-value=1.2e+03 Score=27.77 Aligned_cols=93 Identities=18% Similarity=0.392 Sum_probs=54.5
Q ss_pred EEEecCceEEEEeeCCeeEEEEecCCEEEEEecCCCCCcc-ccccc--cccceEEEeccCcEEEEEecCCCceeeeccCC
Q 043502 570 RVMHGSRSFFLITDGGFTFEYLYAESVWLWLRHDHSTPMR-GVLGN--YNGSLYMVDLYGSLLIRERSSNELAWINCTAM 646 (949)
Q Consensus 570 rvmh~~~s~fliTd~G~~fE~~~~~~~WlWl~H~h~T~m~-g~~g~--~ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~m 646 (949)
+++-.++.++..|||+ .+|++| .|+-.....+-. +..+. -.|+||+--.++. -.+.||.-+.-
T Consensus 252 ~~~~~~~~vvY~gDD~-~~~~lY-----kFVs~~~~~~~~~~~~~~ll~~GtLyaak~~~~--------g~~~Wv~L~~~ 317 (524)
T PF05787_consen 252 VLADPGRVVVYMGDDG-RNGYLY-----KFVSDKPWDPGDRAANRDLLDEGTLYAAKFNQD--------GTGEWVPLGHG 317 (524)
T ss_pred EeecCCeEEEEEEecC-CCCeEE-----EEecCCCCCCcccchhhhhhhCCEeceEEECCC--------CcEEEEECCCc
Confidence 4555667776678883 455554 577666554332 22222 3566666544443 55778877542
Q ss_pred --------------------CCCceeecCCCCCCCCCcceeecccCcEEEE
Q 043502 647 --------------------RKGRQVIGGPPWDGITGKAMKVTAEDALFFV 677 (949)
Q Consensus 647 --------------------r~G~~V~~G~pwdgipG~~~~vt~~dklF~v 677 (949)
|.=-+.+++.|+|..-|.+..- .+.++||+
T Consensus 318 ~~~l~~~~~~~~~a~v~~~tr~aA~~~GAT~f~RpEgi~~~p-~~g~vY~a 367 (524)
T PF05787_consen 318 QGGLTAKNGFADQADVLIETRRAADAVGATPFDRPEGITVNP-DDGEVYFA 367 (524)
T ss_pred ccccccCCCCCChHHhhhhhhhccccCccccccCccCeeEeC-CCCEEEEE
Confidence 1112246788999999988422 44588876
No 117
>PRK13616 lipoprotein LpqB; Provisional
Probab=24.99 E-value=8.3e+02 Score=29.48 Aligned_cols=105 Identities=14% Similarity=0.121 Sum_probs=53.4
Q ss_pred CCCCCceeEEeeccccCCceEEE--Ecc--CCceeeeccCCchhhhhhccccccccccccccCcccccccccCCceeeEE
Q 043502 266 RPPGANVAAIADAGNVRPEVVYT--ISS--TGDLYEYDRISKPSWRKHIWSKGTAANASLIPSMACTLHGLIGDHSTSLF 341 (949)
Q Consensus 266 ~PPga~VA~I~D~~~~R~~vVft--iss--~GdLYeYnr~tkpsW~kHiws~~l~~~~sl~~s~g~t~~gl~g~~S~SLF 341 (949)
+|-|..||+|++ .-||+ |-+ .|. +. +..-+.|.++++-+...+.=....+|.
T Consensus 456 SpDG~RiA~i~~------g~v~Va~Vvr~~~G~-~~-----------------l~~~~~l~~~l~~~~~~l~W~~~~~L~ 511 (591)
T PRK13616 456 SRDGVRAAMIIG------GKVYLAVVEQTEDGQ-YA-----------------LTNPREVGPGLGDTAVSLDWRTGDSLV 511 (591)
T ss_pred CCCCCEEEEEEC------CEEEEEEEEeCCCCc-ee-----------------ecccEEeecccCCccccceEecCCEEE
Confidence 688899999985 23444 333 231 11 122233445444432233222234577
Q ss_pred EEecCCcEEEEEeeccceeEEEcCCCCCCcccccceeccCCccccceEEEEEcccceEEE
Q 043502 342 LLTKGGNLVERRIQQRKWKWIIHGSPEDTHLTSITPVQQDESNEKFFSLFLTTSAGAVFE 401 (949)
Q Consensus 342 lltk~G~LVErr~~qrkWkWi~HGtP~~~~l~siT~v~~d~~~~~~~sLF~t~S~G~Vye 401 (949)
.++.++.-.=|+++.+|..--. -|.+..+.-++-|-.. + ..||+++++|.+..
T Consensus 512 V~~~~~~~~v~~v~vDG~~~~~--~~~~n~~~~v~~vaa~-~----~~iyv~~~~g~~~l 564 (591)
T PRK13616 512 VGRSDPEHPVWYVNLDGSNSDA--LPSRNLSAPVVAVAAS-P----STVYVTDARAVLQL 564 (591)
T ss_pred EEecCCCCceEEEecCCccccc--cCCCCccCceEEEecC-C----ceEEEEcCCceEEe
Confidence 8888765544778888765322 1221112222222222 1 36999999995543
No 118
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=24.02 E-value=52 Score=36.24 Aligned_cols=70 Identities=19% Similarity=0.282 Sum_probs=45.1
Q ss_pred EEEEecC--CCCCccccccc-cccceEEEeccCcEEEEEec--CCCceeeec--------cCCCCCceeecCCCCCCCCC
Q 043502 597 WLWLRHD--HSTPMRGVLGN-YNGSLYMVDLYGSLLIRERS--SNELAWINC--------TAMRKGRQVIGGPPWDGITG 663 (949)
Q Consensus 597 WlWl~H~--h~T~m~g~~g~-~ngsLf~vd~~GsL~~R~~~--g~~~~W~n~--------t~mr~G~~V~~G~pwdgipG 663 (949)
=.||+|= +.-|+.|+.-- ++..||+-|..||=.|=++. .+.|.|.|. ...+.--.....+||.|+|.
T Consensus 86 ~~~l~hl~~~~~~l~Ga~DH~vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ld~~~ll~~~~~~~~~g~p~ 165 (265)
T COG2514 86 ARVLNHLAEEGIPLVGASDHLVSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEPLDVEALLEEATKEPWTGLPA 165 (265)
T ss_pred HHHHHHHHhcCCcccccCcchhheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccccCHHHHhhhccccccccCCC
Confidence 3466663 33566654443 99999999999999876554 667777772 12222222344778888887
Q ss_pred cce
Q 043502 664 KAM 666 (949)
Q Consensus 664 ~~~ 666 (949)
..+
T Consensus 166 ~t~ 168 (265)
T COG2514 166 GTI 168 (265)
T ss_pred CcE
Confidence 654
No 119
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=23.95 E-value=1.5e+03 Score=28.46 Aligned_cols=258 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCCCCCcccccCCCccccccceEEEEecCceEEEEeeCCeeEEEEecCCEEEEEecCCCCCccccccccccceEEEeccC
Q 043502 547 GRAQNPIEEYSLPDNWINNYFRLRVMHGSRSFFLITDGGFTFEYLYAESVWLWLRHDHSTPMRGVLGNYNGSLYMVDLYG 626 (949)
Q Consensus 547 ~~~~~~~e~y~~~~~~i~~nf~~rvmh~~~s~fliTd~G~~fE~~~~~~~WlWl~H~h~T~m~g~~g~~ngsLf~vd~~G 626 (949)
++.+..||-||+-.+| |.-+|+|++. |+.+=--.|+ =+|.||-.+.+|
T Consensus 43 sRt~g~IEiwN~~~~w----~~~~vi~g~~-------drsIE~L~W~---------------------e~~RLFS~g~sg 90 (691)
T KOG2048|consen 43 SRTDGNIEIWNLSNNW----FLEPVIHGPE-------DRSIESLAWA---------------------EGGRLFSSGLSG 90 (691)
T ss_pred eccCCcEEEEccCCCc----eeeEEEecCC-------CCceeeEEEc---------------------cCCeEEeecCCc
Q ss_pred cEEEEEecCCCceeeeccCCCCCce-eecCCCCCCCCCcceeecccCcEEEEe-cCCeEeEEEEeceeeeeecCCCCCCc
Q 043502 627 SLLIRERSSNELAWINCTAMRKGRQ-VIGGPPWDGITGKAMKVTAEDALFFVS-KNGRLLQFTVALRKFKWKDCRHPLDT 704 (949)
Q Consensus 627 sL~~R~~~g~~~~W~n~t~mr~G~~-V~~G~pwdgipG~~~~vt~~dklF~vt-~~GrLlq~tva~rkwkW~dhg~PPgT 704 (949)
++-| |=-++.-++=+. ..+| +==+|-+-.+.+.-.+. +||.|+-|.....+.+.+---.=--.
T Consensus 91 ~i~E---------wDl~~lk~~~~~d~~gg------~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s 155 (691)
T KOG2048|consen 91 SITE---------WDLHTLKQKYNIDSNGG------AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS 155 (691)
T ss_pred eEEE---------EecccCceeEEecCCCc------ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccc
Q ss_pred ceEEeecccccccCeEEEEccCceEeeecCceeeeeecCCCCceee--------ecCCCceecCCCCCCcceEEEEecCC
Q 043502 705 KVACIVDQELFRENIVFVVGRNGRLYQYNKVTELWHEHYQSQHLVL--------SILPGTAMRPPSASLTGSLFMLSEDG 776 (949)
Q Consensus 705 kIata~d~~~~r~~~iFvvG~NGrLYEwNg~TW~WhdHGkP~~t~l--------s~~pGtAM~psk~sl~gslFm~~snG 776 (949)
.|-+. .---.+.+|+++..||.+.=|+ ++.+++.. ....-.+++=+-++|.-++-+-+.--
T Consensus 156 RvLsl--sw~~~~~~i~~Gs~Dg~Iriwd---------~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~ 224 (691)
T KOG2048|consen 156 RVLSL--SWNPTGTKIAGGSIDGVIRIWD---------VKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSA 224 (691)
T ss_pred eEEEE--EecCCccEEEecccCceEEEEE---------cCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCC
Q ss_pred CeEEEEEeCCCCeEEeecCCCCCCceeecCCCCccc----CceEEEEecCCceEEEEEeCCcceeeecCCCCCCCcCcch
Q 043502 777 GLVEYHWNTWDGWNWVEHGTPGKGVTLVGSPGPCLH----GNQLLLIGSDGKVYLRYMDQMTWRWKNCGFPHKAKENSED 852 (949)
Q Consensus 777 ~LyEr~Wntg~gW~WVdHGtP~~gvtvv~spG~sf~----gsqLFviGSDG~LYeRywdg~tWtW~NhG~P~~Gk~~~~~ 852 (949)
|-+. ||| -+|||=.....+-++-=-|+- .++||.-|-||++.+=.-.++.=-|+.-+.=
T Consensus 225 G~V~-FWd-------~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r--------- 287 (691)
T KOG2048|consen 225 GTVT-FWD-------SIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRR--------- 287 (691)
T ss_pred ceEE-EEc-------ccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccc---------
Q ss_pred hhhccccCCccccccchhhhcccccccccccccccCCCCcccccccccCCCCceEEEecCCcee
Q 043502 853 ETQIGARETTEEVCNDENFEASMDKDADDLNDLKSHCDPKVAATRPIPFSEDSVIFDLRDGRLG 916 (949)
Q Consensus 853 h~q~g~~~~~ee~c~d~d~a~slekdq~nf~d~~~~cd~Kva~~rpipfsedsV~felrDGrl~ 916 (949)
+-+--..|.+-..++..+=-++|+.|+
T Consensus 288 -------------------------------------~~h~hdvrs~av~~~~l~sgG~d~~l~ 314 (691)
T KOG2048|consen 288 -------------------------------------DLHAHDVRSMAVIENALISGGRDFTLA 314 (691)
T ss_pred -------------------------------------cCCcccceeeeeecceEEecceeeEEE
No 120
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=23.87 E-value=3.9e+02 Score=33.08 Aligned_cols=142 Identities=15% Similarity=0.220 Sum_probs=80.5
Q ss_pred eeehhccCceEEEecCCCCcceEEEeeccccccccccccccceeEeecceeecCCcEEEEEecCCceeEee--ccCCCcc
Q 043502 184 ILALAEAGVLYQMQLGDNSQPIWVEFIPAIDQSINGEAEQRSVIQIKSGVVSQDGERVYFCTKNGLLLELS--EVEPPRW 261 (949)
Q Consensus 184 ilalseag~lyqmql~e~sqpiw~ef~~~~~~~~~~~~~qs~~~~ik~gvvs~dg~~lff~~knG~LLe~t--el~p~rW 261 (949)
++.+|..|.+=++.+.+-... -+..+ +.... .+=++......|+|.|++|+++.|. ++..-|
T Consensus 510 lVllTk~GyIKR~~l~~f~~~----------aikLk--e~D~L---v~v~~~~t~d~LllfT~~Grv~r~~~~eIP~gr- 573 (742)
T PRK05561 510 TVVLSKKGWVRRAKGHSIDAS----------GLSFK--EGDSL---LFAFEARTTDKLLLFTSTGRVYSLPVHELPSAR- 573 (742)
T ss_pred EEEEecCCEEEeccchhhhhh----------ccccC--CCCeE---EEEEEecCCCeEEEEECCCcEEEeEHHhCCCcC-
Confidence 567899999999988764422 11122 22222 2223445566899999999999998 676666
Q ss_pred ccCCCC--------CCCceeEEeeccccCCceEEEEccCC-----ceeeeccCCchhhhhhccccccccccccccCcccc
Q 043502 262 LNHGRP--------PGANVAAIADAGNVRPEVVYTISSTG-----DLYEYDRISKPSWRKHIWSKGTAANASLIPSMACT 328 (949)
Q Consensus 262 ~~hg~P--------Pga~VA~I~D~~~~R~~vVftiss~G-----dLYeYnr~tkpsW~kHiws~~l~~~~sl~~s~g~t 328 (949)
.. |.| +|-+|+++..... .+-+++++.+| .|-+|...++..-. --.+-.+-.+..+.
T Consensus 574 a~-Gv~i~~~i~L~~gE~Iv~~~~~~~--~~~lllvT~~G~~KRt~lse~~~~~R~gkg----~i~Lk~~D~Lv~a~--- 643 (742)
T PRK05561 574 GD-GEPLTGLVDLAPGEEIVHVLAFDP--DQKLLLASSAGYGFVVTLEDLVARTRAGKA----VINLKDGDEVLPPV--- 643 (742)
T ss_pred CC-CcChhhhcCCCCCceEEEEEEEcC--CcEEEEEECCCcEEEEEhhhccccCCCCeE----EEEeCCCCEEEEEE---
Confidence 33 663 6667776664321 12477888889 66666655441100 00000000000000
Q ss_pred cccccCCceeeEEEEecCCcEEEEEee
Q 043502 329 LHGLIGDHSTSLFLLTKGGNLVERRIQ 355 (949)
Q Consensus 329 ~~gl~g~~S~SLFlltk~G~LVErr~~ 355 (949)
.... .--++++|++|.++-...+
T Consensus 644 --~v~~--~d~I~liT~~G~~irf~~~ 666 (742)
T PRK05561 644 --PVED--DDHLAAITSNGRLLVFPLS 666 (742)
T ss_pred --EeCC--CCEEEEEeCCCcEEEEEHH
Confidence 0111 1259999999999876655
No 121
>PRK02889 tolB translocation protein TolB; Provisional
Probab=23.53 E-value=1.1e+03 Score=26.47 Aligned_cols=19 Identities=21% Similarity=0.365 Sum_probs=14.1
Q ss_pred cceeecCCcEEEEE-ecCCc
Q 043502 231 SGVVSQDGERVYFC-TKNGL 249 (949)
Q Consensus 231 ~gvvs~dg~~lff~-~knG~ 249 (949)
+...|+||++|.|. +++|.
T Consensus 244 ~~~~SPDG~~la~~~~~~g~ 263 (427)
T PRK02889 244 APAWSPDGRTLAVALSRDGN 263 (427)
T ss_pred ceEECCCCCEEEEEEccCCC
Confidence 45788999998874 56664
No 122
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=23.42 E-value=5e+02 Score=31.58 Aligned_cols=124 Identities=20% Similarity=0.109 Sum_probs=88.2
Q ss_pred eeecCCcEEEEEecCCceeEee-ccCCCccccCCCCCCCceeEEeeccccCCceEEEEccCCceeeeccCCchhhhhhcc
Q 043502 233 VVSQDGERVYFCTKNGLLLELS-EVEPPRWLNHGRPPGANVAAIADAGNVRPEVVYTISSTGDLYEYDRISKPSWRKHIW 311 (949)
Q Consensus 233 vvs~dg~~lff~~knG~LLe~t-el~p~rW~~hg~PPga~VA~I~D~~~~R~~vVftiss~GdLYeYnr~tkpsW~kHiw 311 (949)
-.|.|-..|-+-+-+|+.+-.+ +--.+.|+.-.---.+.|-+|.|+...+ .+|+++-+++.-+.+-.++- +.-||
T Consensus 65 ~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~--~~~~~ 140 (541)
T KOG4547|consen 65 KASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKV--IIRIW 140 (541)
T ss_pred hccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC--ceEecCCceeEEEEecccce--eeeee
Confidence 3566777889999999999888 5668899987555566778888887665 99999999999998887773 34456
Q ss_pred ccccccccccccCcccccccccCCceeeEEEEecCCcEEEEEeeccceeEEEcCCCCCC
Q 043502 312 SKGTAANASLIPSMACTLHGLIGDHSTSLFLLTKGGNLVERRIQQRKWKWIIHGSPEDT 370 (949)
Q Consensus 312 s~~l~~~~sl~~s~g~t~~gl~g~~S~SLFlltk~G~LVErr~~qrkWkWi~HGtP~~~ 370 (949)
.+..-...|+-.+.- .-.-++++.++++|= .+++.+|++-= -||+|-+.
T Consensus 141 ~~~~~~~~sl~is~D-~~~l~~as~~ik~~~-~~~kevv~~ft--------gh~s~v~t 189 (541)
T KOG4547|consen 141 KEQKPLVSSLCISPD-GKILLTASRQIKVLD-IETKEVVITFT--------GHGSPVRT 189 (541)
T ss_pred ccCCCccceEEEcCC-CCEEEeccceEEEEE-ccCceEEEEec--------CCCcceEE
Confidence 655544444444443 223356677777775 46788888643 48888743
No 123
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=23.13 E-value=1.3e+03 Score=29.20 Aligned_cols=179 Identities=18% Similarity=0.333 Sum_probs=93.9
Q ss_pred EEeeCCeeEEEEecCCEEEEEecCCCCCccccc---------cccccceEEEeccCcEEEEEecCCCceeeeccCCCCCc
Q 043502 580 LITDGGFTFEYLYAESVWLWLRHDHSTPMRGVL---------GNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGR 650 (949)
Q Consensus 580 liTd~G~~fE~~~~~~~WlWl~H~h~T~m~g~~---------g~~ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G~ 650 (949)
++|-.++.-=++|.++.=+=.=-||.--+.|-. ..++|++-+.|.+|-.+.|.-.-......
T Consensus 154 ~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYs--------- 224 (745)
T KOG0301|consen 154 YVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYS--------- 224 (745)
T ss_pred EEeccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEE---------
Confidence 456666666677777665544455553333321 12566666666655555544332222211
Q ss_pred eeecCCCCCCCCCcceeecccCcEEEEe-cCCeEeEEEEeceeeeeecCCCC---CCcceEEeecccccccCeEEEEccC
Q 043502 651 QVIGGPPWDGITGKAMKVTAEDALFFVS-KNGRLLQFTVALRKFKWKDCRHP---LDTKVACIVDQELFRENIVFVVGRN 726 (949)
Q Consensus 651 ~V~~G~pwdgipG~~~~vt~~dklF~vt-~~GrLlq~tva~rkwkW~dhg~P---PgTkIata~d~~~~r~~~iFvvG~N 726 (949)
+.++.++.+++.+ +|+.| . .| +=..|.-+ |+|.|=.| --+-|+ .|.|.|+|
T Consensus 225 ---------------is~~~~~~~Ivs~gEDrtl-r-iW-----~~~e~~q~I~lPttsiWsa--~~L~Ng-DIvvg~SD 279 (745)
T KOG0301|consen 225 ---------------ISMALSDGLIVSTGEDRTL-R-IW-----KKDECVQVITLPTTSIWSA--KVLLNG-DIVVGGSD 279 (745)
T ss_pred ---------------EEecCCCCeEEEecCCceE-E-Ee-----ecCceEEEEecCccceEEE--EEeeCC-CEEEeccC
Confidence 2233445555544 34433 1 22 22244444 67776433 224455 89999999
Q ss_pred ceEeeecCceeeeeec-------------CCCCc-----eeeecCCCceecCCCCCCcceEEEEecCCCeEEEEEeCCCC
Q 043502 727 GRLYQYNKVTELWHEH-------------YQSQH-----LVLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWDG 788 (949)
Q Consensus 727 GrLYEwNg~TW~WhdH-------------GkP~~-----t~ls~~pGtAM~psk~sl~gslFm~~snG~LyEr~Wntg~g 788 (949)
|++|=|+-.--.|.+- ..... .-....||--.-.++.+-.|-++|+-..-..--|+|+ .+.
T Consensus 280 G~VrVfT~~k~R~As~evl~afd~~v~s~~~~kt~~~g~v~~~~lPg~e~L~spGt~dGq~~~Vr~~~~v~ayqws-~~e 358 (745)
T KOG0301|consen 280 GRVRVFTVDKDRKASDEVLKAFDAEVVSQISSKTEEVGGVKKDDLPGLEILKSPGTRDGQTKVVRDGENVEAYQWS-NGE 358 (745)
T ss_pred ceEEEEEecccccCCHHHHHHHHHHHHhhhhhhhhhhCccccccCCchhhhcCCCCCCCcEEEEEcCCcceeEEee-ccc
Confidence 9999987664444321 11111 0112234444444444456678887654444456666 899
Q ss_pred eEEee
Q 043502 789 WNWVE 793 (949)
Q Consensus 789 W~WVd 793 (949)
|+|+-
T Consensus 359 ~r~ik 363 (745)
T KOG0301|consen 359 WRWIK 363 (745)
T ss_pred ceeec
Confidence 99986
No 124
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=23.03 E-value=3.4e+02 Score=32.48 Aligned_cols=146 Identities=18% Similarity=0.232 Sum_probs=74.7
Q ss_pred ccCcEEEEecCCeEeEEEE----e------ceeeeeecCCCCCCcceEEeecccccccCeEEEEccCceEeeecCceeee
Q 043502 670 AEDALFFVSKNGRLLQFTV----A------LRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQYNKVTELW 739 (949)
Q Consensus 670 ~~dklF~vt~~GrLlq~tv----a------~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~NGrLYEwNg~TW~W 739 (949)
.++..-.+++||++|++-- - .-..+|+---.|--.--..|++-+--.+ -+++..++|++|.|...+.
T Consensus 184 g~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~~~~i~qla~G~d-h~i~lt~~G~vy~~Gs~qk-- 260 (476)
T COG5184 184 GWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIVQLAAGAD-HLIALTNEGKVYGWGSNQK-- 260 (476)
T ss_pred CCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecCchheeeeccCCc-eEEEEecCCcEEEecCCcc--
Confidence 4677888999999998422 1 1122333333331100112222233323 7889999999998665555
Q ss_pred eecCCCCceeeecCC----CceecCCCCCCcc--eEEEEecCCCeEEEEEeCCCCeEEeecCCC----------------
Q 043502 740 HEHYQSQHLVLSILP----GTAMRPPSASLTG--SLFMLSEDGGLVEYHWNTWDGWNWVEHGTP---------------- 797 (949)
Q Consensus 740 hdHGkP~~t~ls~~p----GtAM~psk~sl~g--slFm~~snG~LyEr~Wntg~gW~WVdHGtP---------------- 797 (949)
-.-|-|-...++..+ --+++..+...-+ -+|.+..+|.+|+.=|| .|..-|.|
T Consensus 261 gqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n-----~fgqlg~~~~~~~~a~~tk~~~~~ 335 (476)
T COG5184 261 GQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVN-----IFGQLGAGSDGEIGALTTKPNYKQ 335 (476)
T ss_pred cccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccc-----hhcccccCcccccceeeccccccc
Confidence 222222222222111 1122221222222 47889999999885444 26666665
Q ss_pred -CCCceeecCCCCcccCceEEEEecCCceE
Q 043502 798 -GKGVTLVGSPGPCLHGNQLLLIGSDGKVY 826 (949)
Q Consensus 798 -~~gvtvv~spG~sf~gsqLFviGSDG~LY 826 (949)
+.++++ ...|+.-+-+|..-.||.||
T Consensus 336 ~~~~~~i---~~is~ge~H~l~L~~~G~l~ 362 (476)
T COG5184 336 LLSGVTI---CSISAGESHSLILRKDGTLY 362 (476)
T ss_pred cCCCceE---EEEecCcceEEEEecCceEE
Confidence 112222 22233346777778888555
No 125
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.68 E-value=7.7e+02 Score=32.91 Aligned_cols=167 Identities=17% Similarity=0.194 Sum_probs=90.2
Q ss_pred CCCceeEEeeccccCCceEEEEccCCceeeeccCCchhhhhhccccccccccccccCccccccccc--------------
Q 043502 268 PGANVAAIADAGNVRPEVVYTISSTGDLYEYDRISKPSWRKHIWSKGTAANASLIPSMACTLHGLI-------------- 333 (949)
Q Consensus 268 Pga~VA~I~D~~~~R~~vVftiss~GdLYeYnr~tkpsW~kHiws~~l~~~~sl~~s~g~t~~gl~-------------- 333 (949)
-|+.|-+|+-. |.+=||--|++|-|||+==.++-.|-.-.-+ +.-+..|...++=+++....
T Consensus 177 dg~~V~~I~~t---~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~-Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 177 DGVSVNCITYT---ENGRIFFAGRDGNLYELVYQAEDGWFGSRCR-KICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred CCceEEEEEec---cCCcEEEeecCCCEEEEEEeccCchhhcccc-cccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 38889999844 4555999999999999776666678554211 11122222222222233333
Q ss_pred ---------CCceeeEEEEecCCc--EEEEEee----------ccceeEEEcCCCCCCcccccceeccCCccccceEEEE
Q 043502 334 ---------GDHSTSLFLLTKGGN--LVERRIQ----------QRKWKWIIHGSPEDTHLTSITPVQQDESNEKFFSLFL 392 (949)
Q Consensus 334 ---------g~~S~SLFlltk~G~--LVErr~~----------qrkWkWi~HGtP~~~~l~siT~v~~d~~~~~~~sLF~ 392 (949)
-.-+++.|.|+++|. .+=..+. +.- .|+.|.-..+.+|.|+-..|+++ ..|--
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~----~~~~s~f~~IvsI~~l~~~es~~--l~LvA 326 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKN----PLDDSVFFSIVSISPLSASESND--LHLVA 326 (1311)
T ss_pred ccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccc----cCCCcccceeEEecccCcccccc--eeEEE
Confidence 222355666666442 2222211 111 45566666788888888888876 66777
Q ss_pred EcccceEEEEeeccCCCCCccccccccccccCCCccc-ccccCCCCcccccceEEE
Q 043502 393 TTSAGAVFEYQIPKYSGTSQENQFSGGWISHLHPPHA-RAARGAVGLPFQVGRTIF 447 (949)
Q Consensus 393 t~S~G~Vyey~~~k~tg~~q~nq~~~~W~sh~~P~~a-k~a~~~~g~pfq~grviF 447 (949)
+||+|--.-+.. -+|+..--.....-.+|.-++.. .+++ ++|-|+|+..+-+
T Consensus 327 ~ts~GvRlYfs~--s~~r~~~~~~~~~s~~~~p~~~~~~q~s-~~p~pl~v~~~~~ 379 (1311)
T KOG1900|consen 327 ITSTGVRLYFST--SSGRQSTSAPFLCSVKHTPTSNSLEQTS-ISPPPLQVQNVRS 379 (1311)
T ss_pred EecCCeEEEEec--cCCCcccccccccccCCCCCCCCccccc-cCCCCceeeeeec
Confidence 888886544333 12221112222334445544444 3333 5566777665543
No 126
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=21.58 E-value=89 Score=23.99 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=19.5
Q ss_pred ceEEEEccCCceeeeccCCc-hhhh
Q 043502 284 EVVYTISSTGDLYEYDRISK-PSWR 307 (949)
Q Consensus 284 ~vVftiss~GdLYeYnr~tk-psW~ 307 (949)
++||+-+.+|.||-+|..|- ..|+
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEe
Confidence 57899999999999998874 3444
No 127
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=21.14 E-value=90 Score=34.61 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=31.3
Q ss_pred ccccccccceeeccCCCCCCCCCcccccCCCccccccceEEEEecCceEEEEeeCCeeEEEEecCC
Q 043502 530 RKGSQAQYDYLFPSISGGRAQNPIEEYSLPDNWINNYFRLRVMHGSRSFFLITDGGFTFEYLYAES 595 (949)
Q Consensus 530 rk~sq~~~~yl~~~~~g~~~~~~~e~y~~~~~~i~~nf~~rvmh~~~s~fliTd~G~~fE~~~~~~ 595 (949)
|+...--+-||.+.+. +-.. --||. .++.|.||||||..|+-.-++.
T Consensus 211 ~~~R~~~e~yi~ip~~---i~~~---~~fP~-------------~~~~f~~itddG~~~~~~~~~~ 257 (296)
T PF09565_consen 211 RTPRPWYEAYIIIPKE---IHRN---PFFPQ-------------KKKPFTVITDDGWIFEAKVCQD 257 (296)
T ss_pred CCCCCCCeEEEECCHH---HhcC---CCCCC-------------CCCceEEEcCCCcEEEEEeccc
Confidence 3333455678876654 2111 33466 5688999999999999876665
No 128
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=21.06 E-value=3.3e+02 Score=29.91 Aligned_cols=93 Identities=14% Similarity=0.160 Sum_probs=51.0
Q ss_pred cceeecccCcEEEEec-----CCeEeEEEEeceeeeeecCCC-C----CCcceEEeecccccccCeEEEEcc--Cce--E
Q 043502 664 KAMKVTAEDALFFVSK-----NGRLLQFTVALRKFKWKDCRH-P----LDTKVACIVDQELFRENIVFVVGR--NGR--L 729 (949)
Q Consensus 664 ~~~~vt~~dklF~vt~-----~GrLlq~tva~rkwkW~dhg~-P----PgTkIata~d~~~~r~~~iFvvG~--NGr--L 729 (949)
.+|+...+++|+++.. .....-.++.+...+|...+. . ||. | +++....-....+|+.|+ +|. |
T Consensus 40 ~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgp-v-~a~~~~~~d~~~~~~aG~~~~g~~~l 117 (281)
T PF12768_consen 40 TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGP-V-TALTFISNDGSNFWVAGRSANGSTFL 117 (281)
T ss_pred EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCc-E-EEEEeeccCCceEEEeceecCCCceE
Confidence 3445556777777653 235555677777788866655 1 343 2 222233334456787776 333 8
Q ss_pred eeecCceeeeeec-CCCCceeeecCCCceecCC
Q 043502 730 YQYNKVTELWHEH-YQSQHLVLSILPGTAMRPP 761 (949)
Q Consensus 730 YEwNg~TW~WhdH-GkP~~t~ls~~pGtAM~ps 761 (949)
+.|+|++|.=.+- .-.+++.+. +-.+.|+
T Consensus 118 ~~~dGs~W~~i~~~~~~~~t~I~---~l~~~~l 147 (281)
T PF12768_consen 118 MKYDGSSWSSIGSDILGSGTTIR---GLQVLPL 147 (281)
T ss_pred EEEcCCceEeccccccCCCCEEE---EEEEEec
Confidence 8899996554433 122234444 3555554
No 129
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.46 E-value=90 Score=35.53 Aligned_cols=38 Identities=24% Similarity=0.177 Sum_probs=27.6
Q ss_pred ccccccCCCCcccccccccCCCCceEEEecCCceeeEE
Q 043502 882 LNDLKSHCDPKVAATRPIPFSEDSVIFDLRDGRLGEMR 919 (949)
Q Consensus 882 f~d~~~~cd~Kva~~rpipfsedsV~felrDGrl~E~~ 919 (949)
|+....-|.|--+-.+=+-.|+|+|+|-..|--+-|+.
T Consensus 303 ~~~~D~fvVPsW~~~~~~~gs~da~LFsfsD~PV~eaL 340 (351)
T COG3435 303 WSAGDIFVVPSWAWHEHVNGSEDAVLFSFSDRPVMEAL 340 (351)
T ss_pred ccCCCEEEccCcceeecccCCcceEEEecCCcHHHHHh
Confidence 34444467777777777777889999988887776654
No 130
>PF10012 DUF2255: Uncharacterized protein conserved in bacteria (DUF2255); InterPro: IPR016888 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.11 E-value=86 Score=30.85 Aligned_cols=37 Identities=14% Similarity=0.392 Sum_probs=30.9
Q ss_pred eEEEeccCcEEEEEecCCCceeeeccCCCCCceeecC
Q 043502 619 LYMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIGG 655 (949)
Q Consensus 619 Lf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G~~V~~G 655 (949)
++.|-++|.|++|-++|..-.|-.-.--.++.+|..|
T Consensus 30 IW~V~vdd~lYVRs~~G~~s~Wy~~A~~~~~GrI~a~ 66 (116)
T PF10012_consen 30 IWVVRVDDDLYVRSYNGRNSRWYRAALAQGAGRIRAG 66 (116)
T ss_pred EEEEEECCEEEEEecCCCcCHHHHHHhhCCCcEEEEC
Confidence 5689999999999999999999998655666676655
Done!