BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043503
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HTF|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIA--SRGLI 322
+D+VL+ +R+ LD GGG G A + ER +I L+ + A ++G+
Sbjct: 58 LDRVLAEXGPQKLRV-LDAGGGEGQTAIKXAERGHQVILCDLSAQXIDRAKQAAEAKGVS 116
Query: 323 S----MHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378
+H + E +D++ H + W+ D L ++ +LRPGG+ L
Sbjct: 117 DNXQFIHCAAQDVASHLETPVDLI-LFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLXF 173
Query: 379 FFCFG 383
+ G
Sbjct: 174 YNAHG 178
>pdb|4HTF|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIA--SRGLI 322
+D+VL+ +R+ LD GGG G A + ER +I L+ + A ++G+
Sbjct: 58 LDRVLAEXGPQKLRV-LDAGGGEGQTAIKXAERGHQVILCDLSAQXIDRAKQAAEAKGVS 116
Query: 323 S----MHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378
+H + E +D++ H + W+ D L ++ +LRPGG+ L
Sbjct: 117 DNXQFIHCAAQDVASHLETPVDLI-LFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLXF 173
Query: 379 FFCFG 383
+ G
Sbjct: 174 YNAHG 178
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 276 TIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSF---IASRGLISMHISVSQRL 332
+R LD+GGG G A + R + T + L GP A GL ++V++
Sbjct: 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLAD-RVTVAEG- 239
Query: 333 PFFEN---TLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGG-IFWLDRFFCFGSQLNE 388
FF+ T D+V VL NW + L L R L PGG + LDR G +
Sbjct: 240 DFFKPLPVTADVVLLSFVLLNWSDEDALTI-LRGCVRALEPGGRLLVLDRADVEGDGADR 298
Query: 389 TYVPMLD 395
+ +LD
Sbjct: 299 FFSTLLD 305
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 281 LDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLD 340
LD+GGGTG ++ ++ER ++ + + +G+ ++ + ++ LPF +
Sbjct: 59 LDLGGGTGKWSLFLQERGFEVVLVDPSKEXL--EVAREKGVKNVVEAKAEDLPFPSGAFE 116
Query: 341 IVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGG--IFWLDRFFCFGSQLNE 388
V ++ + +++ + F+ +I R+L P G I +D F+ F Q E
Sbjct: 117 AVLALGDVLSYVENKDKAFS--EIRRVLVPDGLLIATVDNFYTFLQQXIE 164
>pdb|1UI9|A Chain A, Crystal Analysis Of Chorismate Mutase From Thermus
Thermophilus
Length = 122
Score = 32.7 bits (73), Expect = 0.39, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 80 ELTREFVHPNEKVSGIN----LSAVMSKLSDDLTVGLPDEVKLAVGPHKLPL 127
+ TRE + + +GI L+AV+ +++DLT P E +G H++PL
Sbjct: 21 QATRELLLKMLEANGIQSYEELAAVIFTVTEDLTFAFPAEAARQIGMHRVPL 72
>pdb|1ODE|A Chain A, Crystal Analysis Of Chorismate Mutase From Thermus
Thermophilus.
pdb|1ODE|B Chain B, Crystal Analysis Of Chorismate Mutase From Thermus
Thermophilus.
pdb|1ODE|C Chain C, Crystal Analysis Of Chorismate Mutase From Thermus
Thermophilus.
pdb|1UFY|A Chain A, Crystal Analysis Of Chorismate Mutase From Thermus
Thermophilus
Length = 122
Score = 32.3 bits (72), Expect = 0.49, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 80 ELTREFVHPNEKVSGIN----LSAVMSKLSDDLTVGLPDEVKLAVGPHKLPL 127
+ TRE + + +GI L+AV+ +++DLT P E +G H++PL
Sbjct: 21 QATRELLLKMLEANGIQSYEELAAVIFTVTEDLTSAFPAEAARQIGMHRVPL 72
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 281 LDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR---------GLISMHISVSQR 331
LDIG G+G + + + ++ +N + + A+R G + +
Sbjct: 35 LDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASS 94
Query: 332 LPFFENTLDIVHSMHVLSNWIPD-SMLEFTLYDIYRLLRPGGIFWLDRF 379
L F +++ D M +PD + +++R+L+PG +L F
Sbjct: 95 LSFHDSSFDFA-VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142
>pdb|3Q87|B Chain B, Structure Of Eukaryotic Translation Termination Complex
Methyltransferase Mtq2-Trm112
Length = 170
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 277 IRIGLDIGGGTGTFAARMRERNVTIITTSLNL 308
++I LD+G TG ++R+RN T+++T LN+
Sbjct: 24 MKIVLDLGTSTGVITEQLRKRN-TVVSTDLNI 54
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 256 IDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPF--- 312
I + I +L L ++ +D+GGG G +A M + + +T LNL G
Sbjct: 170 IHRSNAKFAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLV 229
Query: 313 NSFIASRGL 321
N A +G+
Sbjct: 230 NENAAEKGV 238
>pdb|2NWB|A Chain A, Crystal Structure Of A Putative 2,3-Dioxygenase (So4414)
From Shewanella Oneidensis In Complex With Ferric Heme.
Northeast Structural Genomics Target Sor52.
pdb|2NWB|B Chain B, Crystal Structure Of A Putative 2,3-Dioxygenase (So4414)
From Shewanella Oneidensis In Complex With Ferric Heme.
Northeast Structural Genomics Target Sor52
Length = 400
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 18/91 (19%)
Query: 239 DCKDCFDLQGREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERN 298
+ K + +GRE + L+D G D G D D+ G G + A R
Sbjct: 45 ELKHTLESEGRELVKALLDEGNTDEGFDS------------AFDLLGNVGLYMAACRRHE 92
Query: 299 VTIITTSLNLDGPFNSFIASRGLISMHISVS 329
+T T S + ++MHI S
Sbjct: 93 ITEPTRET------TSPLLEASALAMHIGAS 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,598,022
Number of Sequences: 62578
Number of extensions: 546782
Number of successful extensions: 872
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 16
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)