Query 043503
Match_columns 430
No_of_seqs 350 out of 2517
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:43:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 3.3E-36 7.2E-41 309.7 9.2 210 174-403 22-250 (506)
2 COG2226 UbiE Methylase involve 99.7 8.4E-17 1.8E-21 154.9 15.9 101 278-383 53-161 (238)
3 PF08241 Methyltransf_11: Meth 99.7 5.2E-16 1.1E-20 125.6 10.7 91 281-376 1-95 (95)
4 PF01209 Ubie_methyltran: ubiE 99.7 4.6E-16 1E-20 149.9 11.4 102 278-384 49-159 (233)
5 PF03141 Methyltransf_29: Puta 99.7 3.9E-16 8.4E-21 161.8 10.9 134 272-409 361-494 (506)
6 PLN02233 ubiquinone biosynthes 99.6 5.3E-15 1.1E-19 144.7 16.7 99 278-381 75-185 (261)
7 PLN02244 tocopherol O-methyltr 99.6 2.3E-14 5E-19 145.4 17.1 125 276-405 118-277 (340)
8 PTZ00098 phosphoethanolamine N 99.6 3.4E-14 7.3E-19 139.2 16.9 138 265-405 41-201 (263)
9 PRK10258 biotin biosynthesis p 99.6 2.7E-14 5.9E-19 138.1 15.7 111 265-380 31-142 (251)
10 PRK14103 trans-aconitate 2-met 99.6 5E-14 1.1E-18 136.9 16.4 134 266-406 19-184 (255)
11 PLN02396 hexaprenyldihydroxybe 99.5 5.4E-14 1.2E-18 141.6 14.3 123 278-405 133-288 (322)
12 PRK11036 putative S-adenosyl-L 99.5 7.8E-14 1.7E-18 135.6 14.6 135 265-405 34-206 (255)
13 PRK11207 tellurite resistance 99.5 2.1E-13 4.6E-18 127.9 16.4 124 278-407 32-171 (197)
14 PRK15068 tRNA mo(5)U34 methylt 99.5 2E-13 4.4E-18 137.6 16.7 126 277-408 123-276 (322)
15 TIGR02752 MenG_heptapren 2-hep 99.5 3E-13 6.4E-18 128.9 16.5 98 278-380 47-153 (231)
16 PF13489 Methyltransf_23: Meth 99.5 1.3E-13 2.9E-18 122.6 12.1 118 277-403 23-160 (161)
17 PLN02336 phosphoethanolamine N 99.5 4.6E-13 1E-17 141.3 17.5 135 266-405 256-413 (475)
18 TIGR00452 methyltransferase, p 99.5 6.8E-13 1.5E-17 133.2 17.6 140 266-411 111-278 (314)
19 KOG1540 Ubiquinone biosynthesi 99.5 4.8E-13 1E-17 128.2 13.5 117 278-402 102-235 (296)
20 PLN02490 MPBQ/MSBQ methyltrans 99.5 1.5E-12 3.2E-17 131.9 17.8 124 278-406 115-256 (340)
21 COG2227 UbiG 2-polyprenyl-3-me 99.5 1.9E-13 4.2E-18 130.5 9.9 96 280-380 63-163 (243)
22 PF12847 Methyltransf_18: Meth 99.5 3.7E-13 8E-18 113.3 10.5 97 279-378 4-111 (112)
23 PRK11873 arsM arsenite S-adeno 99.5 1.5E-12 3.2E-17 127.6 15.9 124 278-406 79-230 (272)
24 PRK15451 tRNA cmo(5)U34 methyl 99.4 5.9E-13 1.3E-17 129.1 10.3 146 278-428 58-226 (247)
25 PRK00517 prmA ribosomal protei 99.4 2.8E-12 6E-17 124.7 14.9 187 158-405 45-237 (250)
26 PRK05785 hypothetical protein; 99.4 2.1E-12 4.5E-17 123.9 13.3 87 278-371 53-140 (226)
27 TIGR00477 tehB tellurite resis 99.4 1.9E-12 4.1E-17 121.3 12.6 123 279-407 33-170 (195)
28 smart00828 PKS_MT Methyltransf 99.4 3.8E-12 8.3E-17 120.7 14.7 121 279-405 2-143 (224)
29 PRK08317 hypothetical protein; 99.4 8.7E-12 1.9E-16 117.8 16.9 133 268-405 11-175 (241)
30 PRK01683 trans-aconitate 2-met 99.4 3.5E-12 7.5E-17 123.8 14.5 105 267-377 22-129 (258)
31 TIGR00740 methyltransferase, p 99.4 3.1E-12 6.8E-17 123.0 13.9 99 278-381 55-164 (239)
32 PF13649 Methyltransf_25: Meth 99.4 5.3E-13 1.2E-17 111.3 7.4 90 280-372 1-101 (101)
33 PF05401 NodS: Nodulation prot 99.4 1.9E-12 4.1E-17 120.7 10.3 172 251-430 16-199 (201)
34 PF06325 PrmA: Ribosomal prote 99.4 8.5E-13 1.8E-17 131.2 8.5 192 158-405 86-282 (295)
35 PF02353 CMAS: Mycolic acid cy 99.4 9.2E-12 2E-16 122.8 15.5 135 265-405 51-216 (273)
36 TIGR02716 C20_methyl_CrtF C-20 99.4 1.2E-11 2.6E-16 123.4 15.5 109 268-382 141-258 (306)
37 PF13847 Methyltransf_31: Meth 99.4 5.6E-12 1.2E-16 112.9 11.6 97 278-380 5-112 (152)
38 PRK00216 ubiE ubiquinone/menaq 99.4 2.5E-11 5.4E-16 115.2 16.5 98 278-380 53-160 (239)
39 TIGR02072 BioC biotin biosynth 99.4 1.5E-11 3.2E-16 116.4 14.8 122 278-405 36-175 (240)
40 TIGR00406 prmA ribosomal prote 99.4 2.2E-11 4.7E-16 120.9 16.5 113 278-404 161-281 (288)
41 PLN02336 phosphoethanolamine N 99.3 8.6E-12 1.9E-16 131.6 14.2 136 267-405 28-181 (475)
42 PRK12335 tellurite resistance 99.3 1.6E-11 3.5E-16 121.6 15.3 121 279-405 123-258 (287)
43 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 3E-11 6.4E-16 113.4 16.0 100 277-381 40-146 (223)
44 smart00138 MeTrc Methyltransfe 99.3 1.5E-11 3.3E-16 120.7 12.4 98 278-378 101-242 (264)
45 PF08003 Methyltransf_9: Prote 99.3 4.4E-11 9.6E-16 118.1 15.1 140 265-410 104-271 (315)
46 PF03848 TehB: Tellurite resis 99.3 2.6E-11 5.5E-16 113.5 12.2 108 267-381 24-136 (192)
47 PRK00121 trmB tRNA (guanine-N( 99.3 2.2E-11 4.8E-16 114.8 11.9 120 277-402 41-177 (202)
48 TIGR00537 hemK_rel_arch HemK-r 99.3 1.2E-10 2.7E-15 107.1 16.1 121 278-405 21-164 (179)
49 COG2264 PrmA Ribosomal protein 99.3 2.1E-11 4.5E-16 120.9 11.5 118 277-405 163-287 (300)
50 PRK11705 cyclopropane fatty ac 99.3 9.6E-11 2.1E-15 120.9 16.3 97 278-380 169-269 (383)
51 KOG1270 Methyltransferases [Co 99.3 7.6E-12 1.6E-16 120.6 7.4 95 278-380 91-197 (282)
52 PRK00107 gidB 16S rRNA methylt 99.3 9.2E-11 2E-15 109.6 14.2 114 278-405 47-168 (187)
53 TIGR03587 Pse_Me-ase pseudamin 99.3 6.8E-11 1.5E-15 111.8 13.0 98 278-381 45-145 (204)
54 PF08242 Methyltransf_12: Meth 99.3 2E-12 4.4E-17 107.1 2.3 89 281-374 1-99 (99)
55 TIGR03840 TMPT_Se_Te thiopurin 99.3 8.8E-11 1.9E-15 111.9 13.7 124 278-405 36-186 (213)
56 TIGR00138 gidB 16S rRNA methyl 99.2 9.8E-11 2.1E-15 108.7 13.3 113 278-404 44-167 (181)
57 COG2230 Cfa Cyclopropane fatty 99.2 1.3E-10 2.9E-15 114.3 14.7 122 278-405 74-222 (283)
58 KOG4300 Predicted methyltransf 99.2 3.7E-11 8E-16 112.2 9.7 97 280-381 80-185 (252)
59 TIGR02021 BchM-ChlM magnesium 99.2 1.6E-10 3.5E-15 109.6 14.4 124 277-406 56-206 (219)
60 COG4106 Tam Trans-aconitate me 99.2 5.8E-11 1.2E-15 111.7 10.8 107 265-377 19-128 (257)
61 PRK04266 fibrillarin; Provisio 99.2 2.9E-10 6.3E-15 109.2 16.0 122 278-407 74-211 (226)
62 PRK11088 rrmA 23S rRNA methylt 99.2 5.9E-11 1.3E-15 116.6 11.5 90 278-379 87-182 (272)
63 KOG1541 Predicted protein carb 99.2 5E-11 1.1E-15 112.3 10.3 125 272-400 46-181 (270)
64 PRK08287 cobalt-precorrin-6Y C 99.2 2.5E-10 5.4E-15 105.8 14.8 115 277-404 32-154 (187)
65 TIGR02081 metW methionine bios 99.2 2.2E-10 4.7E-15 106.9 13.7 135 279-420 16-181 (194)
66 PRK06922 hypothetical protein; 99.2 1.1E-10 2.4E-15 125.8 12.8 101 278-380 420-539 (677)
67 PRK15001 SAM-dependent 23S rib 99.2 2.4E-10 5.2E-15 117.4 13.9 122 254-378 206-340 (378)
68 PRK05134 bifunctional 3-demeth 99.2 6.9E-10 1.5E-14 106.0 15.6 123 278-405 50-204 (233)
69 TIGR02469 CbiT precorrin-6Y C5 99.2 5E-10 1.1E-14 95.3 12.8 92 278-377 21-121 (124)
70 TIGR00091 tRNA (guanine-N(7)-) 99.2 2.1E-10 4.6E-15 107.3 10.7 120 278-403 18-155 (194)
71 TIGR01983 UbiG ubiquinone bios 99.1 7.5E-10 1.6E-14 104.8 14.5 123 278-405 47-202 (224)
72 PRK13255 thiopurine S-methyltr 99.1 1.1E-09 2.4E-14 104.7 15.5 126 278-407 39-191 (218)
73 PRK06202 hypothetical protein; 99.1 2.6E-10 5.7E-15 109.2 11.2 97 277-378 61-166 (232)
74 PF05175 MTS: Methyltransferas 99.1 4.6E-10 9.9E-15 102.9 11.6 98 278-378 33-140 (170)
75 PLN02585 magnesium protoporphy 99.1 9.3E-10 2E-14 110.7 14.7 121 278-405 146-298 (315)
76 TIGR01177 conserved hypothetic 99.1 7.4E-10 1.6E-14 111.9 13.7 117 278-403 184-312 (329)
77 COG4976 Predicted methyltransf 99.1 5.9E-11 1.3E-15 112.4 5.3 136 265-405 114-264 (287)
78 COG4123 Predicted O-methyltran 99.1 7.3E-10 1.6E-14 107.3 12.8 141 259-405 25-193 (248)
79 PRK07580 Mg-protoporphyrin IX 99.1 1.9E-09 4.1E-14 102.3 15.6 125 278-408 65-216 (230)
80 PRK14968 putative methyltransf 99.1 3.2E-09 7E-14 97.3 15.8 122 278-405 25-172 (188)
81 TIGR03534 RF_mod_PrmC protein- 99.1 2.8E-09 6E-14 102.4 15.8 134 263-404 75-239 (251)
82 PF05891 Methyltransf_PK: AdoM 99.1 1.7E-09 3.7E-14 102.5 13.9 127 276-405 55-200 (218)
83 PRK11188 rrmJ 23S rRNA methylt 99.1 8E-10 1.7E-14 104.9 11.7 116 278-405 53-188 (209)
84 PF05219 DREV: DREV methyltran 99.1 1.7E-09 3.7E-14 104.8 13.4 138 276-421 94-255 (265)
85 PRK14967 putative methyltransf 99.1 5.6E-09 1.2E-13 99.6 16.9 123 278-406 38-184 (223)
86 PRK14121 tRNA (guanine-N(7)-)- 99.1 2.5E-09 5.3E-14 110.0 15.0 108 267-377 113-234 (390)
87 PRK09489 rsmC 16S ribosomal RN 99.0 2.1E-09 4.5E-14 109.4 13.4 119 256-378 176-303 (342)
88 PRK13944 protein-L-isoaspartat 99.0 1.8E-09 3.9E-14 101.9 11.7 89 278-377 74-172 (205)
89 PF00891 Methyltransf_2: O-met 99.0 1.6E-09 3.5E-14 104.2 11.5 113 266-385 90-206 (241)
90 PRK00377 cbiT cobalt-precorrin 99.0 4.8E-09 1E-13 98.3 14.2 113 278-401 42-165 (198)
91 PF05148 Methyltransf_8: Hypot 99.0 2.1E-09 4.6E-14 101.2 11.2 130 256-405 55-184 (219)
92 PF13659 Methyltransf_26: Meth 99.0 1.5E-09 3.3E-14 92.0 9.0 97 279-377 3-114 (117)
93 KOG2361 Predicted methyltransf 99.0 1.4E-09 3E-14 103.9 8.9 175 250-428 46-263 (264)
94 KOG1271 Methyltransferases [Ge 99.0 2.7E-09 5.8E-14 98.1 10.3 122 278-405 69-204 (227)
95 PLN02232 ubiquinone biosynthes 99.0 3.1E-09 6.7E-14 96.6 10.7 73 306-381 3-84 (160)
96 TIGR03533 L3_gln_methyl protei 99.0 1.4E-08 3.1E-13 100.7 16.3 119 278-404 123-272 (284)
97 PRK09328 N5-glutamine S-adenos 99.0 2E-08 4.3E-13 98.1 16.9 142 257-405 89-261 (275)
98 PRK13942 protein-L-isoaspartat 99.0 4.8E-09 1E-13 99.6 12.1 89 278-377 78-175 (212)
99 COG2813 RsmC 16S RNA G1207 met 99.0 9.2E-09 2E-13 101.8 14.2 123 252-378 134-266 (300)
100 PF05724 TPMT: Thiopurine S-me 99.0 4.6E-09 1E-13 100.5 11.1 141 265-409 26-193 (218)
101 PRK14966 unknown domain/N5-glu 99.0 2.2E-08 4.7E-13 103.8 16.7 140 257-404 234-403 (423)
102 TIGR00080 pimt protein-L-isoas 98.9 5.4E-09 1.2E-13 99.2 11.0 89 278-377 79-176 (215)
103 PF07021 MetW: Methionine bios 98.9 2.9E-09 6.4E-14 99.1 8.9 120 278-406 15-167 (193)
104 PTZ00146 fibrillarin; Provisio 98.9 1.9E-08 4.1E-13 99.8 14.9 123 278-407 134-272 (293)
105 TIGR00536 hemK_fam HemK family 98.9 2.5E-08 5.4E-13 98.8 15.7 141 257-404 94-267 (284)
106 PLN03075 nicotianamine synthas 98.9 7.9E-09 1.7E-13 102.8 11.9 99 276-378 123-233 (296)
107 KOG3010 Methyltransferase [Gen 98.9 3E-09 6.6E-14 101.7 8.5 97 278-380 35-138 (261)
108 TIGR03704 PrmC_rel_meth putati 98.9 4.5E-08 9.7E-13 95.5 15.9 140 257-403 66-237 (251)
109 PRK11805 N5-glutamine S-adenos 98.9 4.6E-08 1E-12 98.2 16.4 119 278-404 135-284 (307)
110 TIGR00438 rrmJ cell division p 98.9 2.4E-08 5.2E-13 92.7 12.6 94 278-378 34-146 (188)
111 KOG3045 Predicted RNA methylas 98.9 1.1E-08 2.3E-13 98.7 10.1 127 257-405 164-290 (325)
112 cd02440 AdoMet_MTases S-adenos 98.9 2.6E-08 5.6E-13 79.7 10.8 94 280-377 2-103 (107)
113 PRK13256 thiopurine S-methyltr 98.9 3.8E-08 8.2E-13 94.6 13.5 99 278-379 45-164 (226)
114 PRK07402 precorrin-6B methylas 98.9 3.5E-08 7.6E-13 92.2 13.0 117 277-405 41-169 (196)
115 TIGR03438 probable methyltrans 98.9 2.2E-08 4.8E-13 100.1 12.2 113 265-382 54-181 (301)
116 PRK01544 bifunctional N5-gluta 98.8 4.9E-08 1.1E-12 104.3 15.2 120 278-404 140-291 (506)
117 PF06080 DUF938: Protein of un 98.8 2.5E-08 5.4E-13 94.0 10.9 124 279-403 28-189 (204)
118 PRK00312 pcm protein-L-isoaspa 98.8 5.9E-08 1.3E-12 91.7 12.5 90 278-378 80-175 (212)
119 PHA03411 putative methyltransf 98.8 6.1E-08 1.3E-12 95.4 12.7 122 278-402 66-210 (279)
120 PRK10901 16S rRNA methyltransf 98.8 1.2E-07 2.7E-12 99.2 15.6 141 258-403 229-398 (427)
121 PRK13168 rumA 23S rRNA m(5)U19 98.8 7.4E-08 1.6E-12 101.3 13.4 135 262-409 283-428 (443)
122 COG2890 HemK Methylase of poly 98.8 2.4E-07 5.1E-12 91.9 16.1 139 255-403 90-260 (280)
123 KOG2940 Predicted methyltransf 98.7 1.7E-08 3.6E-13 95.9 6.7 136 265-407 63-228 (325)
124 PRK14901 16S rRNA methyltransf 98.7 1.7E-07 3.6E-12 98.4 14.9 132 265-402 244-409 (434)
125 smart00650 rADc Ribosomal RNA 98.7 7.2E-08 1.5E-12 88.1 10.4 95 278-378 15-113 (169)
126 COG2242 CobL Precorrin-6B meth 98.7 4.4E-07 9.5E-12 84.2 15.1 119 278-409 36-164 (187)
127 PRK14904 16S rRNA methyltransf 98.7 1.8E-07 3.8E-12 98.5 13.8 132 265-402 242-402 (445)
128 TIGR00446 nop2p NOL1/NOP2/sun 98.7 2.1E-07 4.5E-12 91.4 11.8 138 258-400 56-222 (264)
129 PRK03522 rumB 23S rRNA methylu 98.6 2.6E-07 5.6E-12 92.9 12.5 118 278-409 175-300 (315)
130 TIGR00563 rsmB ribosomal RNA s 98.6 5.2E-07 1.1E-11 94.4 14.9 133 262-400 227-391 (426)
131 PRK14902 16S rRNA methyltransf 98.6 4.1E-07 8.8E-12 95.7 13.7 138 262-404 239-406 (444)
132 KOG1975 mRNA cap methyltransfe 98.6 9.2E-08 2E-12 94.9 8.2 98 278-377 119-236 (389)
133 PRK14903 16S rRNA methyltransf 98.6 4.4E-07 9.5E-12 95.2 13.8 137 262-403 226-392 (431)
134 PRK04457 spermidine synthase; 98.6 2.9E-07 6.3E-12 90.4 11.4 100 277-378 67-177 (262)
135 PRK13943 protein-L-isoaspartat 98.6 3.5E-07 7.7E-12 92.4 12.1 89 278-377 82-179 (322)
136 PF01739 CheR: CheR methyltran 98.6 3E-07 6.6E-12 86.6 10.4 117 258-378 9-175 (196)
137 PF03291 Pox_MCEL: mRNA cappin 98.6 1.6E-07 3.4E-12 95.2 8.2 120 257-378 42-186 (331)
138 COG2518 Pcm Protein-L-isoaspar 98.6 5.8E-07 1.3E-11 85.0 11.3 98 266-377 65-168 (209)
139 COG2521 Predicted archaeal met 98.6 3.1E-07 6.7E-12 87.7 9.4 125 276-404 134-275 (287)
140 PRK00811 spermidine synthase; 98.5 4.1E-07 8.9E-12 90.3 10.5 99 276-377 76-190 (283)
141 PF01135 PCMT: Protein-L-isoas 98.5 3.3E-07 7.1E-12 87.2 9.0 89 278-377 74-171 (209)
142 PF02390 Methyltransf_4: Putat 98.5 5.7E-07 1.2E-11 84.6 10.5 119 279-403 20-157 (195)
143 PRK10611 chemotaxis methyltran 98.5 8.5E-07 1.8E-11 88.2 11.2 99 276-378 116-262 (287)
144 PRK01581 speE spermidine synth 98.5 1.6E-06 3.5E-11 88.5 13.4 131 276-409 150-300 (374)
145 PRK03612 spermidine synthase; 98.5 1.8E-06 3.8E-11 92.8 13.6 126 277-405 298-443 (521)
146 PHA03412 putative methyltransf 98.5 9.3E-07 2E-11 85.3 10.2 120 278-400 51-196 (241)
147 PLN02781 Probable caffeoyl-CoA 98.4 1.5E-06 3.3E-11 83.9 11.3 105 266-381 61-181 (234)
148 PLN02672 methionine S-methyltr 98.4 2.8E-06 6.1E-11 97.2 15.0 140 257-403 98-300 (1082)
149 KOG2899 Predicted methyltransf 98.4 1.7E-06 3.6E-11 83.2 11.0 96 279-377 61-208 (288)
150 TIGR00479 rumA 23S rRNA (uraci 98.4 2.2E-06 4.9E-11 89.7 12.9 129 265-405 281-419 (431)
151 PRK11783 rlmL 23S rRNA m(2)G24 98.4 1.5E-06 3.3E-11 96.4 11.7 122 278-405 540-679 (702)
152 TIGR02085 meth_trns_rumB 23S r 98.4 2.2E-06 4.7E-11 88.4 11.1 118 278-409 235-360 (374)
153 KOG1499 Protein arginine N-met 98.4 8.8E-07 1.9E-11 89.1 7.8 99 277-375 61-164 (346)
154 COG2519 GCD14 tRNA(1-methylade 98.4 4.2E-06 9.1E-11 81.1 12.0 121 265-402 86-216 (256)
155 COG1041 Predicted DNA modifica 98.4 4.3E-06 9.2E-11 84.5 12.5 116 279-404 200-328 (347)
156 COG2263 Predicted RNA methylas 98.3 8.9E-06 1.9E-10 75.7 12.9 113 278-403 47-165 (198)
157 PRK15128 23S rRNA m(5)C1962 me 98.3 5.2E-06 1.1E-10 86.3 12.3 117 278-400 222-363 (396)
158 TIGR00417 speE spermidine synt 98.3 4.8E-06 1E-10 82.0 10.5 98 277-377 73-185 (270)
159 PF07942 N2227: N2227-like pro 98.3 1.7E-05 3.7E-10 78.2 13.7 125 278-407 58-243 (270)
160 PLN02366 spermidine synthase 98.2 5.8E-06 1.3E-10 83.1 10.5 98 276-376 91-204 (308)
161 PRK10909 rsmD 16S rRNA m(2)G96 98.2 1.3E-05 2.7E-10 75.8 11.5 97 278-380 55-161 (199)
162 PLN02476 O-methyltransferase 98.2 3.5E-05 7.6E-10 76.4 14.2 98 278-383 120-233 (278)
163 PF08704 GCD14: tRNA methyltra 98.2 1.5E-05 3.2E-10 77.8 11.2 123 265-403 32-168 (247)
164 PF05185 PRMT5: PRMT5 arginine 98.2 7.3E-06 1.6E-10 86.4 9.6 97 277-375 187-294 (448)
165 COG4122 Predicted O-methyltran 98.2 1.2E-05 2.7E-10 76.8 10.2 108 265-383 51-171 (219)
166 PRK00274 ksgA 16S ribosomal RN 98.2 6.1E-06 1.3E-10 81.4 8.3 81 266-348 32-115 (272)
167 KOG3191 Predicted N6-DNA-methy 98.1 2.9E-05 6.4E-10 71.8 11.9 126 273-402 40-189 (209)
168 KOG3178 Hydroxyindole-O-methyl 98.1 1.4E-05 3E-10 80.6 10.6 99 276-381 177-278 (342)
169 PRK14896 ksgA 16S ribosomal RN 98.1 1.1E-05 2.3E-10 79.0 9.4 68 277-348 30-101 (258)
170 PF01596 Methyltransf_3: O-met 98.1 1.2E-05 2.6E-10 76.3 9.3 108 265-383 37-160 (205)
171 COG0500 SmtA SAM-dependent met 98.1 3.2E-05 7E-10 63.9 10.8 95 280-381 52-158 (257)
172 COG0220 Predicted S-adenosylme 98.1 1E-05 2.2E-10 77.9 8.4 97 278-377 50-163 (227)
173 COG1352 CheR Methylase of chem 98.1 2.7E-05 6E-10 76.7 11.5 100 275-378 96-241 (268)
174 PF01170 UPF0020: Putative RNA 98.1 2.4E-05 5.2E-10 72.6 10.2 120 278-407 30-172 (179)
175 PRK01544 bifunctional N5-gluta 98.0 2.5E-05 5.5E-10 83.6 10.9 123 274-402 345-484 (506)
176 TIGR00755 ksgA dimethyladenosi 98.0 4.7E-05 1E-09 74.1 11.7 79 266-348 19-104 (253)
177 KOG1331 Predicted methyltransf 98.0 4.8E-06 1E-10 81.8 4.5 107 265-377 36-142 (293)
178 PF10294 Methyltransf_16: Puta 98.0 5E-05 1.1E-09 70.0 10.3 100 278-380 47-158 (173)
179 KOG2904 Predicted methyltransf 98.0 0.0001 2.3E-09 72.1 12.3 98 279-378 151-285 (328)
180 PRK11727 23S rRNA mA1618 methy 97.9 0.00016 3.5E-09 73.1 14.0 75 273-349 111-200 (321)
181 TIGR00478 tly hemolysin TlyA f 97.9 4.2E-05 9.2E-10 73.8 9.3 86 277-376 76-169 (228)
182 PRK05031 tRNA (uracil-5-)-meth 97.9 6.1E-05 1.3E-09 77.4 11.0 116 279-409 209-347 (362)
183 PLN02589 caffeoyl-CoA O-methyl 97.8 6.1E-05 1.3E-09 73.5 8.7 108 265-383 71-195 (247)
184 PF11968 DUF3321: Putative met 97.8 0.0001 2.2E-09 70.1 9.5 118 279-409 54-184 (219)
185 KOG1661 Protein-L-isoaspartate 97.8 6.5E-05 1.4E-09 71.0 7.9 93 271-377 80-192 (237)
186 TIGR02143 trmA_only tRNA (urac 97.8 0.00015 3.3E-09 74.2 11.3 116 279-409 200-338 (353)
187 TIGR00095 RNA methyltransferas 97.8 0.00018 3.9E-09 67.3 10.7 95 278-378 51-159 (189)
188 PF01728 FtsJ: FtsJ-like methy 97.8 6.2E-05 1.3E-09 69.2 7.4 124 273-407 20-164 (181)
189 KOG1500 Protein arginine N-met 97.8 0.00025 5.4E-09 71.2 11.9 127 268-400 169-306 (517)
190 PTZ00338 dimethyladenosine tra 97.8 7.9E-05 1.7E-09 74.5 8.6 68 277-348 37-111 (294)
191 COG3963 Phospholipid N-methylt 97.8 0.00031 6.8E-09 64.3 11.2 114 264-380 36-158 (194)
192 PRK04148 hypothetical protein; 97.7 0.00033 7.1E-09 62.2 10.8 93 277-380 17-111 (134)
193 COG0293 FtsJ 23S rRNA methylas 97.7 0.00018 3.9E-09 68.1 9.7 135 278-425 47-200 (205)
194 PF12147 Methyltransf_20: Puta 97.6 0.0019 4E-08 64.2 14.6 102 274-378 134-249 (311)
195 KOG3987 Uncharacterized conser 97.6 2.4E-05 5.1E-10 73.8 1.3 136 278-421 114-275 (288)
196 PRK04338 N(2),N(2)-dimethylgua 97.6 0.00025 5.5E-09 73.4 9.0 90 279-377 60-157 (382)
197 COG2265 TrmA SAM-dependent met 97.6 0.00054 1.2E-08 72.0 11.1 130 264-405 281-419 (432)
198 PLN02823 spermine synthase 97.5 0.00046 1E-08 70.3 10.2 99 276-377 103-219 (336)
199 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.5 0.00079 1.7E-08 66.0 11.4 83 323-405 137-238 (256)
200 PF02475 Met_10: Met-10+ like- 97.5 0.00034 7.3E-09 66.2 8.1 89 278-374 103-198 (200)
201 KOG1269 SAM-dependent methyltr 97.5 0.00014 3E-09 74.7 5.8 96 280-380 114-217 (364)
202 KOG1663 O-methyltransferase [S 97.5 0.00065 1.4E-08 65.1 9.9 110 265-383 65-188 (237)
203 KOG0820 Ribosomal RNA adenine 97.5 0.00044 9.5E-09 67.8 8.8 78 264-345 46-130 (315)
204 COG1092 Predicted SAM-dependen 97.4 0.00088 1.9E-08 69.5 10.6 125 278-404 219-364 (393)
205 COG2520 Predicted methyltransf 97.4 0.0021 4.6E-08 65.4 12.8 125 267-400 181-314 (341)
206 PF05958 tRNA_U5-meth_tr: tRNA 97.4 0.00069 1.5E-08 69.4 9.2 131 263-409 184-337 (352)
207 PRK11933 yebU rRNA (cytosine-C 97.4 0.0024 5.3E-08 67.9 13.1 119 278-398 115-262 (470)
208 PRK11760 putative 23S rRNA C24 97.4 0.0029 6.2E-08 64.4 13.0 90 278-377 213-304 (357)
209 PF10672 Methyltrans_SAM: S-ad 97.3 0.00099 2.1E-08 66.4 8.4 99 278-378 125-238 (286)
210 COG0030 KsgA Dimethyladenosine 97.2 0.0016 3.4E-08 64.0 8.7 82 265-348 19-105 (259)
211 PF02527 GidB: rRNA small subu 97.2 0.0044 9.4E-08 58.0 11.4 113 279-405 51-174 (184)
212 PRK00536 speE spermidine synth 97.2 0.0027 5.8E-08 62.6 10.3 114 274-402 70-195 (262)
213 PF09243 Rsm22: Mitochondrial 97.1 0.0051 1.1E-07 60.9 11.5 124 272-402 29-164 (274)
214 PF01564 Spermine_synth: Sperm 97.1 0.0066 1.4E-07 59.2 12.1 128 276-406 76-220 (246)
215 COG0421 SpeE Spermidine syntha 97.1 0.0029 6.3E-08 63.0 9.6 100 275-377 75-189 (282)
216 PF03602 Cons_hypoth95: Conser 97.0 0.0012 2.6E-08 61.5 6.0 98 278-380 44-155 (183)
217 PF08123 DOT1: Histone methyla 97.0 0.0017 3.7E-08 61.7 7.0 112 264-381 30-161 (205)
218 PRK00050 16S rRNA m(4)C1402 me 97.0 0.0024 5.2E-08 64.0 8.0 79 265-345 8-97 (296)
219 COG0144 Sun tRNA and rRNA cyto 97.0 0.015 3.3E-07 59.7 13.8 145 254-403 137-314 (355)
220 KOG2352 Predicted spermine/spe 96.9 0.0055 1.2E-07 64.5 10.2 99 279-379 51-162 (482)
221 PF01269 Fibrillarin: Fibrilla 96.9 0.034 7.3E-07 53.4 14.5 121 278-405 75-211 (229)
222 PF02384 N6_Mtase: N-6 DNA Met 96.8 0.0053 1.2E-07 61.3 9.3 99 276-376 46-181 (311)
223 KOG2798 Putative trehalase [Ca 96.8 0.012 2.6E-07 59.0 11.4 145 262-413 132-343 (369)
224 PRK11783 rlmL 23S rRNA m(2)G24 96.7 0.0062 1.3E-07 68.0 9.6 98 278-377 192-346 (702)
225 COG0357 GidB Predicted S-adeno 96.7 0.012 2.5E-07 56.4 10.1 120 278-406 69-195 (215)
226 COG0116 Predicted N6-adenine-s 96.7 0.017 3.7E-07 59.5 11.6 98 279-378 194-344 (381)
227 TIGR00308 TRM1 tRNA(guanine-26 96.7 0.0067 1.5E-07 62.8 8.6 90 279-377 47-146 (374)
228 PF09445 Methyltransf_15: RNA 96.6 0.004 8.6E-08 57.1 5.6 67 278-346 1-77 (163)
229 COG0742 N6-adenine-specific me 96.6 0.014 3.1E-07 54.6 9.2 99 278-378 45-154 (187)
230 COG1189 Predicted rRNA methyla 96.5 0.014 3.1E-07 56.4 9.4 121 278-407 81-225 (245)
231 TIGR03439 methyl_EasF probable 96.5 0.024 5.2E-07 57.5 11.2 108 265-377 67-196 (319)
232 TIGR02987 met_A_Alw26 type II 96.4 0.016 3.4E-07 62.5 10.1 70 278-349 33-123 (524)
233 PF00398 RrnaAD: Ribosomal RNA 96.4 0.011 2.4E-07 57.9 7.7 93 276-376 30-132 (262)
234 COG4798 Predicted methyltransf 96.3 0.039 8.5E-07 52.0 10.3 122 279-405 51-204 (238)
235 PF04816 DUF633: Family of unk 96.2 0.092 2E-06 49.9 12.8 115 280-407 1-125 (205)
236 KOG4589 Cell division protein 96.2 0.017 3.6E-07 54.1 7.2 97 278-380 71-186 (232)
237 KOG3420 Predicted RNA methylas 96.1 0.012 2.6E-07 53.0 5.9 80 265-349 40-125 (185)
238 COG1889 NOP1 Fibrillarin-like 96.1 0.17 3.6E-06 48.1 13.7 151 248-405 48-213 (231)
239 COG4627 Uncharacterized protei 96.1 0.0013 2.8E-08 59.6 -0.4 55 322-377 31-85 (185)
240 KOG1709 Guanidinoacetate methy 96.0 0.03 6.5E-07 53.5 8.4 105 278-387 103-215 (271)
241 PF13578 Methyltransf_24: Meth 95.9 0.0041 8.8E-08 51.9 1.9 94 281-378 1-105 (106)
242 COG3897 Predicted methyltransf 95.9 0.025 5.4E-07 53.3 7.1 92 278-376 81-176 (218)
243 PF10354 DUF2431: Domain of un 95.9 0.095 2.1E-06 48.2 10.8 120 283-404 3-150 (166)
244 COG4076 Predicted RNA methylas 95.8 0.022 4.9E-07 53.3 6.2 92 279-375 35-132 (252)
245 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.3 0.05 1.1E-06 54.1 7.4 138 261-403 73-245 (283)
246 PF04672 Methyltransf_19: S-ad 95.3 0.12 2.6E-06 51.1 9.7 119 276-398 68-211 (267)
247 PF13679 Methyltransf_32: Meth 95.2 0.055 1.2E-06 47.9 6.5 69 275-346 24-107 (141)
248 KOG2915 tRNA(1-methyladenosine 95.1 0.27 5.8E-06 48.7 11.5 125 265-404 97-233 (314)
249 PF03492 Methyltransf_7: SAM d 95.0 0.3 6.5E-06 49.9 12.2 114 265-380 5-185 (334)
250 KOG3201 Uncharacterized conser 94.8 0.064 1.4E-06 49.2 5.8 119 278-403 31-163 (201)
251 PRK13699 putative methylase; P 94.8 0.11 2.5E-06 49.9 8.1 79 323-405 3-95 (227)
252 KOG1099 SAM-dependent methyltr 94.8 0.045 9.7E-07 52.8 5.0 104 265-377 32-162 (294)
253 TIGR01444 fkbM_fam methyltrans 94.4 0.064 1.4E-06 46.8 4.9 38 279-318 1-40 (143)
254 COG4262 Predicted spermidine s 94.3 0.39 8.4E-06 49.4 10.7 131 276-409 289-439 (508)
255 PF06859 Bin3: Bicoid-interact 94.2 0.028 6E-07 48.2 2.1 39 338-377 1-43 (110)
256 KOG2730 Methylase [General fun 94.1 0.096 2.1E-06 50.3 5.6 119 247-373 68-197 (263)
257 PLN02668 indole-3-acetate carb 93.3 0.28 6E-06 51.0 7.9 45 333-378 157-237 (386)
258 cd00315 Cyt_C5_DNA_methylase C 93.3 1.5 3.2E-05 43.4 12.7 125 279-406 2-143 (275)
259 KOG3115 Methyltransferase-like 93.1 0.3 6.4E-06 46.5 7.0 95 280-377 64-182 (249)
260 PF03059 NAS: Nicotianamine sy 93.1 0.86 1.9E-05 45.4 10.6 97 277-377 121-229 (276)
261 COG1064 AdhP Zn-dependent alco 93.1 0.32 7E-06 49.7 7.7 95 272-380 165-261 (339)
262 KOG2187 tRNA uracil-5-methyltr 93.0 0.12 2.6E-06 55.0 4.7 52 278-331 385-442 (534)
263 PF01861 DUF43: Protein of unk 92.8 2.3 5.1E-05 41.4 12.8 129 278-413 46-185 (243)
264 PF04989 CmcI: Cephalosporin h 92.6 0.3 6.5E-06 46.5 6.3 96 278-378 34-147 (206)
265 PF06962 rRNA_methylase: Putat 92.4 0.83 1.8E-05 40.9 8.5 109 300-410 1-129 (140)
266 TIGR00006 S-adenosyl-methyltra 92.3 0.63 1.4E-05 46.9 8.6 78 265-344 9-98 (305)
267 PF05971 Methyltransf_10: Prot 91.8 0.95 2.1E-05 45.6 9.2 83 265-349 89-188 (299)
268 PRK11524 putative methyltransf 91.3 0.46 9.9E-06 47.2 6.4 77 322-403 9-100 (284)
269 PF00107 ADH_zinc_N: Zinc-bind 91.3 0.79 1.7E-05 39.0 7.0 85 286-381 1-92 (130)
270 KOG2793 Putative N2,N2-dimethy 91.1 2.5 5.4E-05 41.5 11.0 100 278-380 88-201 (248)
271 cd08254 hydroxyacyl_CoA_DH 6-h 91.1 1.8 4E-05 42.6 10.4 89 279-378 168-263 (338)
272 PF02254 TrkA_N: TrkA-N domain 90.5 4.3 9.3E-05 33.9 10.7 102 285-402 4-113 (116)
273 cd08283 FDH_like_1 Glutathione 89.7 2.3 5E-05 43.6 10.1 100 278-379 186-307 (386)
274 PF07091 FmrO: Ribosomal RNA m 89.5 1.5 3.3E-05 42.9 8.0 80 264-348 95-181 (251)
275 COG5459 Predicted rRNA methyla 89.4 0.48 1E-05 48.5 4.5 99 278-378 115-225 (484)
276 PF07757 AdoMet_MTase: Predict 88.9 0.56 1.2E-05 40.2 3.9 27 279-305 61-87 (112)
277 PRK10742 putative methyltransf 88.8 2.7 5.8E-05 41.3 9.1 70 278-349 90-175 (250)
278 KOG2671 Putative RNA methylase 88.0 1.1 2.3E-05 45.9 5.9 99 278-376 210-352 (421)
279 COG2384 Predicted SAM-dependen 87.6 19 0.00041 34.8 13.8 127 266-405 8-142 (226)
280 KOG0822 Protein kinase inhibit 87.4 1.1 2.4E-05 48.2 5.9 99 277-376 368-476 (649)
281 PRK09424 pntA NAD(P) transhydr 87.0 5.1 0.00011 43.3 10.8 95 278-378 166-285 (509)
282 PF00145 DNA_methylase: C-5 cy 86.7 4.2 9.2E-05 40.0 9.5 125 279-407 2-143 (335)
283 PRK09880 L-idonate 5-dehydroge 86.2 3.7 8.1E-05 41.2 8.9 91 278-379 171-267 (343)
284 KOG1122 tRNA and rRNA cytosine 84.6 5 0.00011 42.2 8.8 116 279-397 244-390 (460)
285 PF03269 DUF268: Caenorhabditi 84.2 0.93 2E-05 41.7 3.0 69 335-404 60-143 (177)
286 KOG2920 Predicted methyltransf 83.1 1.1 2.4E-05 44.6 3.3 95 278-376 118-232 (282)
287 PRK01747 mnmC bifunctional tRN 83.0 8.5 0.00018 42.7 10.6 74 323-404 150-225 (662)
288 KOG2198 tRNA cytosine-5-methyl 82.7 7.4 0.00016 40.2 9.1 118 279-398 158-316 (375)
289 KOG1596 Fibrillarin and relate 82.6 4 8.7E-05 40.0 6.8 98 271-377 154-260 (317)
290 COG1063 Tdh Threonine dehydrog 81.8 13 0.00029 37.8 10.8 94 279-383 171-274 (350)
291 cd08230 glucose_DH Glucose deh 81.2 10 0.00023 38.1 9.8 92 279-380 175-271 (355)
292 KOG4058 Uncharacterized conser 80.8 7.5 0.00016 35.5 7.4 107 264-380 60-174 (199)
293 COG0270 Dcm Site-specific DNA 80.7 12 0.00027 37.9 10.0 120 279-400 5-141 (328)
294 PF11899 DUF3419: Protein of u 80.5 2.1 4.6E-05 44.5 4.5 60 320-380 275-336 (380)
295 PF01795 Methyltransf_5: MraW 80.1 5.5 0.00012 40.4 7.1 77 266-344 10-99 (310)
296 cd08232 idonate-5-DH L-idonate 79.5 14 0.00031 36.6 9.9 90 278-378 167-262 (339)
297 cd05188 MDR Medium chain reduc 79.3 16 0.00035 34.2 9.9 90 278-378 136-232 (271)
298 PF05430 Methyltransf_30: S-ad 78.3 3.8 8.2E-05 35.9 4.7 77 322-405 33-110 (124)
299 cd08294 leukotriene_B4_DH_like 77.7 20 0.00042 35.2 10.3 88 279-378 146-241 (329)
300 KOG1562 Spermidine synthase [A 77.4 6.2 0.00013 39.8 6.4 99 276-377 121-235 (337)
301 PHA01634 hypothetical protein 77.2 5.1 0.00011 35.6 5.1 39 278-318 30-69 (156)
302 TIGR02825 B4_12hDH leukotriene 77.2 29 0.00063 34.2 11.4 88 279-378 141-237 (325)
303 TIGR01202 bchC 2-desacetyl-2-h 77.0 12 0.00026 37.0 8.6 83 280-380 148-233 (308)
304 TIGR00675 dcm DNA-methyltransf 76.6 27 0.00058 35.2 10.9 122 280-405 1-139 (315)
305 cd08234 threonine_DH_like L-th 76.1 18 0.00039 35.6 9.5 90 278-378 161-257 (334)
306 PF04445 SAM_MT: Putative SAM- 75.4 7 0.00015 38.0 6.1 70 278-349 77-162 (234)
307 PRK07417 arogenate dehydrogena 75.3 16 0.00035 35.9 8.9 82 281-374 4-87 (279)
308 PF01555 N6_N4_Mtase: DNA meth 75.1 5.7 0.00012 36.7 5.3 51 264-317 180-230 (231)
309 COG0286 HsdM Type I restrictio 74.8 15 0.00033 39.4 9.1 116 254-375 168-323 (489)
310 COG4301 Uncharacterized conser 74.7 15 0.00032 36.3 8.0 97 278-378 80-193 (321)
311 cd08261 Zn_ADH7 Alcohol dehydr 74.6 22 0.00048 35.2 9.8 89 279-378 162-258 (337)
312 COG0541 Ffh Signal recognition 73.7 30 0.00065 36.7 10.5 137 288-429 118-269 (451)
313 TIGR02822 adh_fam_2 zinc-bindi 73.2 27 0.00059 34.9 10.1 88 278-380 167-256 (329)
314 TIGR03451 mycoS_dep_FDH mycoth 72.0 26 0.00057 35.3 9.7 91 279-380 179-278 (358)
315 PF03446 NAD_binding_2: NAD bi 71.6 17 0.00036 32.7 7.3 111 283-407 7-121 (163)
316 cd08245 CAD Cinnamyl alcohol d 71.4 35 0.00076 33.5 10.3 89 279-378 165-256 (330)
317 PF02153 PDH: Prephenate dehyd 71.3 15 0.00033 35.7 7.5 73 290-374 1-75 (258)
318 cd08281 liver_ADH_like1 Zinc-d 70.8 25 0.00054 35.7 9.3 89 280-379 195-291 (371)
319 PRK11524 putative methyltransf 70.6 10 0.00022 37.5 6.2 52 265-319 198-249 (284)
320 TIGR00872 gnd_rel 6-phosphoglu 70.4 39 0.00084 33.6 10.3 113 281-405 4-118 (298)
321 TIGR00561 pntA NAD(P) transhyd 70.4 15 0.00033 39.8 7.8 92 278-375 165-281 (511)
322 PF01555 N6_N4_Mtase: DNA meth 69.5 6.4 0.00014 36.3 4.3 50 357-409 35-86 (231)
323 PLN03154 putative allyl alcoho 68.9 48 0.001 33.5 10.8 91 278-380 160-260 (348)
324 PTZ00357 methyltransferase; Pr 68.7 17 0.00036 40.8 7.6 94 279-373 703-830 (1072)
325 PRK03659 glutathione-regulated 68.7 36 0.00079 37.5 10.5 83 285-376 406-496 (601)
326 PRK07502 cyclohexadienyl dehyd 68.6 37 0.00079 33.8 9.7 87 278-375 7-97 (307)
327 PF02005 TRM: N2,N2-dimethylgu 67.9 17 0.00038 37.8 7.4 90 279-377 52-153 (377)
328 cd08237 ribitol-5-phosphate_DH 67.8 30 0.00065 34.8 9.0 90 278-380 165-258 (341)
329 COG0604 Qor NADPH:quinone redu 67.0 50 0.0011 33.4 10.5 91 279-381 145-244 (326)
330 KOG1501 Arginine N-methyltrans 66.8 11 0.00024 39.9 5.6 37 279-317 69-106 (636)
331 cd08293 PTGR2 Prostaglandin re 66.7 42 0.0009 33.3 9.8 88 279-378 157-254 (345)
332 TIGR03366 HpnZ_proposed putati 66.6 36 0.00079 33.0 9.1 91 279-380 123-220 (280)
333 cd08239 THR_DH_like L-threonin 66.5 41 0.00088 33.4 9.6 89 280-379 167-263 (339)
334 PRK10309 galactitol-1-phosphat 66.5 43 0.00093 33.4 9.8 92 279-381 163-263 (347)
335 PRK13699 putative methylase; P 65.9 16 0.00034 35.2 6.2 40 278-319 165-204 (227)
336 TIGR00027 mthyl_TIGR00027 meth 65.7 61 0.0013 31.8 10.4 99 277-379 82-198 (260)
337 COG0275 Predicted S-adenosylme 65.5 33 0.00071 34.7 8.5 78 265-344 12-102 (314)
338 cd08255 2-desacetyl-2-hydroxye 64.8 43 0.00094 31.9 9.2 86 280-378 101-190 (277)
339 cd00401 AdoHcyase S-adenosyl-L 64.5 32 0.0007 36.3 8.7 86 278-380 203-291 (413)
340 COG0686 Ald Alanine dehydrogen 64.1 17 0.00036 37.1 6.1 92 279-375 170-265 (371)
341 cd05285 sorbitol_DH Sorbitol d 63.7 56 0.0012 32.4 10.0 86 281-377 167-264 (343)
342 cd05278 FDH_like Formaldehyde 63.7 48 0.001 32.7 9.5 89 279-378 170-267 (347)
343 PRK10669 putative cation:proto 62.5 75 0.0016 34.5 11.4 102 285-402 423-532 (558)
344 KOG1098 Putative SAM-dependent 61.5 4.8 0.0001 44.2 1.9 111 279-396 47-177 (780)
345 COG3129 Predicted SAM-dependen 60.4 21 0.00046 34.9 5.8 70 279-350 81-165 (292)
346 cd08285 NADP_ADH NADP(H)-depen 60.1 74 0.0016 31.7 10.2 91 279-380 169-268 (351)
347 cd08295 double_bond_reductase_ 59.5 78 0.0017 31.4 10.2 88 279-378 154-251 (338)
348 PRK10458 DNA cytosine methylas 59.2 1.1E+02 0.0024 32.9 11.6 122 279-402 90-255 (467)
349 PRK02261 methylaspartate mutas 58.8 94 0.002 27.5 9.4 93 290-402 23-116 (137)
350 cd03084 phosphohexomutase The 58.7 1.6E+02 0.0034 29.9 12.4 119 275-409 111-250 (355)
351 PF05711 TylF: Macrocin-O-meth 58.7 74 0.0016 31.2 9.5 73 322-401 159-233 (248)
352 cd08236 sugar_DH NAD(P)-depend 58.3 77 0.0017 31.3 9.9 89 279-378 162-258 (343)
353 PLN02740 Alcohol dehydrogenase 56.7 81 0.0018 32.2 10.0 91 279-380 201-302 (381)
354 PRK03562 glutathione-regulated 56.7 89 0.0019 34.7 10.8 87 279-376 402-496 (621)
355 COG3510 CmcI Cephalosporin hyd 56.4 48 0.001 31.7 7.3 97 278-378 71-180 (237)
356 TIGR03201 dearomat_had 6-hydro 56.1 98 0.0021 31.0 10.3 92 278-380 168-274 (349)
357 cd05281 TDH Threonine dehydrog 55.5 85 0.0018 31.1 9.7 88 280-378 167-262 (341)
358 COG1867 TRM1 N2,N2-dimethylgua 55.4 29 0.00063 36.0 6.2 92 277-377 53-153 (380)
359 KOG2651 rRNA adenine N-6-methy 55.3 25 0.00055 36.7 5.7 31 275-305 152-183 (476)
360 KOG1227 Putative methyltransfe 54.2 9.2 0.0002 38.6 2.4 106 253-371 174-288 (351)
361 PRK12490 6-phosphogluconate de 53.4 1.1E+02 0.0025 30.2 10.2 110 283-403 6-117 (299)
362 PLN02827 Alcohol dehydrogenase 53.4 81 0.0018 32.2 9.3 90 279-379 196-296 (378)
363 KOG2539 Mitochondrial/chloropl 53.3 46 0.001 35.6 7.4 101 276-378 200-315 (491)
364 COG0287 TyrA Prephenate dehydr 51.9 55 0.0012 32.6 7.5 87 280-374 6-94 (279)
365 PRK05708 2-dehydropantoate 2-r 51.3 1.4E+02 0.003 29.8 10.4 88 280-376 5-102 (305)
366 TIGR00692 tdh L-threonine 3-de 51.3 1.3E+02 0.0028 29.8 10.2 88 281-379 166-262 (340)
367 PRK11559 garR tartronate semia 50.9 1.2E+02 0.0025 29.9 9.7 109 281-403 6-119 (296)
368 PRK09496 trkA potassium transp 50.9 1.3E+02 0.0028 31.2 10.6 84 278-371 232-324 (453)
369 PF02558 ApbA: Ketopantoate re 50.5 61 0.0013 28.1 6.9 87 281-377 2-100 (151)
370 TIGR00064 ftsY signal recognit 50.5 2.6E+02 0.0056 27.6 12.4 111 292-405 94-225 (272)
371 PF14740 DUF4471: Domain of un 50.0 26 0.00057 35.2 4.8 60 335-402 219-285 (289)
372 cd08233 butanediol_DH_like (2R 49.9 88 0.0019 31.1 8.8 90 280-380 176-274 (351)
373 PLN02586 probable cinnamyl alc 49.9 96 0.0021 31.4 9.2 91 279-379 186-279 (360)
374 cd08231 MDR_TM0436_like Hypoth 49.7 88 0.0019 31.3 8.8 88 280-378 181-280 (361)
375 COG2933 Predicted SAM-dependen 49.4 55 0.0012 32.8 6.8 64 279-345 214-277 (358)
376 PRK15001 SAM-dependent 23S rib 49.3 1.5E+02 0.0032 31.0 10.4 107 262-378 33-142 (378)
377 PRK10867 signal recognition pa 49.2 2E+02 0.0043 30.6 11.5 43 336-379 181-223 (433)
378 cd08241 QOR1 Quinone oxidoredu 49.0 1.4E+02 0.003 28.4 9.8 89 278-378 141-238 (323)
379 cd08279 Zn_ADH_class_III Class 48.8 1.2E+02 0.0025 30.6 9.5 88 279-377 185-281 (363)
380 TIGR02819 fdhA_non_GSH formald 48.4 1.2E+02 0.0026 31.3 9.7 99 281-380 190-301 (393)
381 PRK09599 6-phosphogluconate de 47.6 1.9E+02 0.0042 28.6 10.7 112 282-404 5-118 (301)
382 PRK05396 tdh L-threonine 3-deh 47.0 1.5E+02 0.0032 29.3 9.9 88 281-379 168-264 (341)
383 cd03089 PMM_PGM The phosphoman 46.8 3.5E+02 0.0076 28.4 13.1 132 261-409 146-300 (443)
384 cd08242 MDR_like Medium chain 46.7 2.4E+02 0.0053 27.4 11.3 86 279-378 158-245 (319)
385 cd08291 ETR_like_1 2-enoyl thi 46.3 91 0.002 30.7 8.2 83 285-379 154-243 (324)
386 PF07991 IlvN: Acetohydroxy ac 46.2 93 0.002 28.7 7.4 89 279-380 6-97 (165)
387 PRK14317 glmM phosphoglucosami 45.8 3.1E+02 0.0067 29.1 12.6 44 262-305 170-219 (465)
388 cd08278 benzyl_alcohol_DH Benz 45.7 1.4E+02 0.0031 30.0 9.7 89 279-378 189-285 (365)
389 PF11253 DUF3052: Protein of u 45.4 1.1E+02 0.0023 27.1 7.3 67 335-405 42-110 (127)
390 PRK13403 ketol-acid reductoiso 45.3 63 0.0014 33.2 6.8 86 281-380 20-108 (335)
391 PF11599 AviRa: RRNA methyltra 45.3 29 0.00063 33.6 4.1 118 257-377 32-213 (246)
392 PRK08507 prephenate dehydrogen 45.2 1.1E+02 0.0024 29.9 8.4 80 281-374 4-87 (275)
393 cd08263 Zn_ADH10 Alcohol dehyd 45.0 1.4E+02 0.0031 30.0 9.5 87 281-378 192-287 (367)
394 cd05286 QOR2 Quinone oxidoredu 44.7 2.2E+02 0.0049 26.9 10.5 88 279-378 139-235 (320)
395 PF14314 Methyltrans_Mon: Viru 44.6 1E+02 0.0022 34.7 8.7 38 259-297 306-343 (675)
396 PF02636 Methyltransf_28: Puta 44.6 31 0.00067 33.4 4.4 36 279-316 21-66 (252)
397 PF01408 GFO_IDH_MocA: Oxidore 44.3 1.4E+02 0.0029 24.6 7.8 109 280-400 3-115 (120)
398 PF10237 N6-adenineMlase: Prob 43.8 2.6E+02 0.0056 25.6 11.9 112 278-405 27-143 (162)
399 KOG0024 Sorbitol dehydrogenase 43.7 2.2E+02 0.0047 29.4 10.2 91 279-380 172-275 (354)
400 KOG0780 Signal recognition par 43.5 2.6E+02 0.0055 29.7 10.8 90 288-378 119-222 (483)
401 cd08240 6_hydroxyhexanoate_dh_ 43.4 1.6E+02 0.0035 29.1 9.6 90 278-378 177-274 (350)
402 cd08243 quinone_oxidoreductase 42.6 2.4E+02 0.0051 27.0 10.4 86 279-378 145-238 (320)
403 cd08258 Zn_ADH4 Alcohol dehydr 42.6 1.9E+02 0.0041 28.3 9.8 90 281-380 169-266 (306)
404 TIGR02818 adh_III_F_hyde S-(hy 42.5 2.1E+02 0.0045 28.9 10.3 91 279-380 188-289 (368)
405 cd08301 alcohol_DH_plants Plan 42.3 1.6E+02 0.0035 29.6 9.4 91 279-380 190-291 (369)
406 PRK06545 prephenate dehydrogen 41.7 1.1E+02 0.0023 31.4 8.0 83 281-372 4-89 (359)
407 TIGR00936 ahcY adenosylhomocys 41.5 76 0.0017 33.4 6.9 86 278-380 196-284 (406)
408 PRK05476 S-adenosyl-L-homocyst 41.2 74 0.0016 33.7 6.8 86 278-380 213-301 (425)
409 cd08300 alcohol_DH_class_III c 41.2 2E+02 0.0044 29.0 10.0 91 279-380 189-290 (368)
410 cd05803 PGM_like4 This PGM-lik 40.9 4.5E+02 0.0098 27.6 13.4 31 275-305 172-204 (445)
411 PRK05225 ketol-acid reductoiso 40.6 51 0.0011 35.4 5.5 90 279-380 38-133 (487)
412 cd08298 CAD2 Cinnamyl alcohol 39.5 1.6E+02 0.0034 28.8 8.6 83 281-378 172-256 (329)
413 COG1255 Uncharacterized protei 39.4 1.2E+02 0.0026 26.6 6.6 83 279-377 16-101 (129)
414 KOG1197 Predicted quinone oxid 38.8 2.1E+02 0.0047 28.7 9.0 94 270-376 143-243 (336)
415 cd05802 GlmM GlmM is a bacteri 38.5 4.8E+02 0.011 27.2 14.0 45 261-305 151-200 (434)
416 COG1109 {ManB} Phosphomannomut 38.4 5.1E+02 0.011 27.5 13.7 49 260-308 158-212 (464)
417 PF10727 Rossmann-like: Rossma 38.2 2.3E+02 0.005 24.7 8.5 83 281-376 14-101 (127)
418 cd08277 liver_alcohol_DH_like 37.9 2.4E+02 0.0053 28.3 9.9 91 279-380 187-288 (365)
419 cd05800 PGM_like2 This PGM-lik 37.9 4.1E+02 0.0089 28.0 12.0 31 275-305 172-204 (461)
420 PRK09496 trkA potassium transp 37.6 1.8E+02 0.0039 30.2 9.1 86 281-376 4-97 (453)
421 KOG2912 Predicted DNA methylas 37.5 99 0.0021 31.8 6.6 85 264-348 88-188 (419)
422 KOG1253 tRNA methyltransferase 37.5 21 0.00045 38.4 2.0 89 280-377 113-215 (525)
423 COG2084 MmsB 3-hydroxyisobutyr 37.1 1.3E+02 0.0029 30.1 7.6 107 289-408 14-123 (286)
424 TIGR00959 ffh signal recogniti 36.8 3.6E+02 0.0077 28.7 11.1 68 336-405 180-247 (428)
425 PLN02178 cinnamyl-alcohol dehy 36.7 1.5E+02 0.0032 30.4 8.1 91 279-379 181-274 (375)
426 cd08267 MDR1 Medium chain dehy 36.6 3.2E+02 0.0068 26.1 10.2 89 278-377 145-239 (319)
427 TIGR01692 HIBADH 3-hydroxyisob 36.6 2.1E+02 0.0046 28.0 9.0 101 289-403 10-113 (288)
428 PRK14321 glmM phosphoglucosami 36.4 5.4E+02 0.012 27.1 14.3 132 261-409 149-300 (449)
429 KOG1201 Hydroxysteroid 17-beta 36.0 1.4E+02 0.0029 30.3 7.4 71 278-348 39-124 (300)
430 PRK14324 glmM phosphoglucosami 35.9 5.5E+02 0.012 27.1 14.2 45 261-305 156-206 (446)
431 COG0773 MurC UDP-N-acetylmuram 35.8 57 0.0012 34.9 4.9 63 281-348 13-76 (459)
432 TIGR01425 SRP54_euk signal rec 35.8 4.7E+02 0.01 27.8 11.8 66 337-405 181-247 (429)
433 TIGR00518 alaDH alanine dehydr 35.0 82 0.0018 32.6 5.9 92 279-375 169-264 (370)
434 cd08265 Zn_ADH3 Alcohol dehydr 34.7 2.7E+02 0.0058 28.3 9.7 87 281-378 208-307 (384)
435 PRK11064 wecC UDP-N-acetyl-D-m 34.5 3.2E+02 0.007 28.6 10.4 112 280-396 6-135 (415)
436 cd08292 ETR_like_2 2-enoyl thi 34.2 1.8E+02 0.0038 28.2 8.0 88 279-378 142-238 (324)
437 PF03514 GRAS: GRAS domain fam 34.2 3.6E+02 0.0078 27.9 10.5 110 269-378 103-244 (374)
438 COG0059 IlvC Ketol-acid reduct 33.8 1.6E+02 0.0035 30.1 7.4 89 279-380 20-111 (338)
439 PF03807 F420_oxidored: NADP o 33.8 85 0.0018 25.0 4.7 79 286-375 6-91 (96)
440 COG1565 Uncharacterized conser 33.6 1.3E+02 0.0028 31.3 6.9 48 265-314 66-123 (370)
441 cd08235 iditol_2_DH_like L-idi 33.5 3E+02 0.0064 27.0 9.6 88 280-378 169-265 (343)
442 cd08296 CAD_like Cinnamyl alco 33.4 1.9E+02 0.0042 28.5 8.2 89 279-378 166-259 (333)
443 cd08269 Zn_ADH9 Alcohol dehydr 33.2 2.3E+02 0.0049 27.2 8.5 87 281-378 134-229 (312)
444 PRK12921 2-dehydropantoate 2-r 33.1 2.6E+02 0.0056 27.2 9.0 87 280-376 3-100 (305)
445 KOG1209 1-Acyl dihydroxyaceton 32.7 1.6E+02 0.0035 28.7 7.0 66 278-345 8-88 (289)
446 PRK15461 NADH-dependent gamma- 32.7 2.4E+02 0.0053 27.8 8.8 111 281-406 5-121 (296)
447 cd08244 MDR_enoyl_red Possible 32.6 4.1E+02 0.009 25.5 10.3 87 280-378 146-241 (324)
448 cd05289 MDR_like_2 alcohol deh 32.5 3.2E+02 0.0069 25.7 9.4 86 279-377 147-237 (309)
449 cd08266 Zn_ADH_like1 Alcohol d 32.4 2.1E+02 0.0046 27.5 8.3 88 279-378 169-265 (342)
450 COG0677 WecC UDP-N-acetyl-D-ma 32.3 4.8E+02 0.011 27.7 10.8 45 356-401 106-151 (436)
451 PRK10754 quinone oxidoreductas 32.2 2.6E+02 0.0055 27.3 8.8 82 285-378 151-239 (327)
452 PTZ00354 alcohol dehydrogenase 31.9 3E+02 0.0066 26.6 9.3 88 280-379 144-241 (334)
453 PRK06522 2-dehydropantoate 2-r 31.5 3.7E+02 0.0081 26.0 9.8 87 280-376 3-98 (304)
454 cd08270 MDR4 Medium chain dehy 31.4 4.2E+02 0.0091 25.2 10.1 86 278-378 134-222 (305)
455 PRK09489 rsmC 16S ribosomal RN 31.4 3.7E+02 0.0079 27.5 9.9 106 280-398 23-129 (342)
456 PTZ00075 Adenosylhomocysteinas 31.3 1.2E+02 0.0026 32.7 6.6 85 278-379 255-342 (476)
457 PRK05562 precorrin-2 dehydroge 31.3 4.4E+02 0.0096 25.4 9.9 65 278-345 26-92 (223)
458 cd08289 MDR_yhfp_like Yhfp put 31.2 2.9E+02 0.0063 26.7 9.0 90 279-380 149-245 (326)
459 cd08297 CAD3 Cinnamyl alcohol 31.2 2.4E+02 0.0052 27.7 8.4 89 279-378 168-265 (341)
460 PRK14974 cell division protein 30.8 6E+02 0.013 26.0 11.6 67 337-405 221-287 (336)
461 cd05288 PGDH Prostaglandin deh 30.6 3.5E+02 0.0076 26.2 9.5 89 278-378 147-244 (329)
462 PRK10537 voltage-gated potassi 30.5 4.2E+02 0.0092 27.7 10.4 100 285-402 246-353 (393)
463 PRK08306 dipicolinate synthase 30.3 3.9E+02 0.0084 26.6 9.8 107 278-403 153-261 (296)
464 cd08260 Zn_ADH6 Alcohol dehydr 30.2 2.2E+02 0.0047 28.1 8.0 89 279-378 168-264 (345)
465 TIGR01505 tartro_sem_red 2-hyd 30.0 3E+02 0.0066 26.9 8.9 107 283-403 5-116 (291)
466 cd08274 MDR9 Medium chain dehy 30.0 4.1E+02 0.0089 26.0 9.9 86 279-378 180-273 (350)
467 PF02086 MethyltransfD12: D12 29.9 48 0.001 31.6 3.1 45 264-308 8-52 (260)
468 cd05564 PTS_IIB_chitobiose_lic 29.8 1.5E+02 0.0032 24.4 5.6 51 313-372 20-71 (96)
469 TIGR00745 apbA_panE 2-dehydrop 29.7 2.8E+02 0.0061 26.7 8.6 78 289-376 5-91 (293)
470 PLN02688 pyrroline-5-carboxyla 29.7 2.9E+02 0.0064 26.4 8.6 83 281-375 4-92 (266)
471 cd05565 PTS_IIB_lactose PTS_II 29.7 1.3E+02 0.0029 25.2 5.3 55 311-374 19-74 (99)
472 TIGR01470 cysG_Nterm siroheme 29.5 3.4E+02 0.0073 25.5 8.7 65 278-345 10-76 (205)
473 PRK09542 manB phosphomannomuta 29.5 6.9E+02 0.015 26.3 14.0 132 261-409 146-301 (445)
474 cd08250 Mgc45594_like Mgc45594 29.4 4.2E+02 0.0092 25.7 9.9 86 280-377 143-236 (329)
475 TIGR00006 S-adenosyl-methyltra 29.3 46 0.00099 33.7 2.9 29 356-384 218-246 (305)
476 COG5379 BtaA S-adenosylmethion 29.2 1.2E+02 0.0027 30.8 5.7 58 322-380 309-368 (414)
477 cd05284 arabinose_DH_like D-ar 29.2 4.1E+02 0.0088 26.0 9.7 88 279-378 170-266 (340)
478 PRK06718 precorrin-2 dehydroge 29.2 4.8E+02 0.01 24.4 10.6 65 278-345 11-77 (202)
479 PF02826 2-Hacid_dh_C: D-isome 28.9 80 0.0017 28.8 4.2 102 279-397 38-144 (178)
480 PRK06249 2-dehydropantoate 2-r 28.8 3.5E+02 0.0076 26.8 9.2 87 279-376 7-104 (313)
481 cd05282 ETR_like 2-enoyl thioe 28.7 3.7E+02 0.0081 25.8 9.3 87 279-377 141-236 (323)
482 COG0275 Predicted S-adenosylme 28.5 64 0.0014 32.7 3.7 29 356-384 222-250 (314)
483 COG1893 ApbA Ketopantoate redu 28.5 2.8E+02 0.006 27.9 8.4 88 280-376 3-99 (307)
484 PLN02514 cinnamyl-alcohol dehy 28.1 2.8E+02 0.0062 27.8 8.5 90 280-380 184-277 (357)
485 PLN02494 adenosylhomocysteinas 27.8 1.4E+02 0.0031 32.2 6.3 87 278-380 255-343 (477)
486 PLN02256 arogenate dehydrogena 27.8 3.6E+02 0.0077 27.1 9.0 81 279-372 38-121 (304)
487 TIGR00853 pts-lac PTS system, 27.7 1.8E+02 0.004 23.9 5.8 66 283-371 8-74 (95)
488 PLN02371 phosphoglucosamine mu 27.4 7.4E+02 0.016 27.3 12.1 28 275-302 262-291 (583)
489 cd01842 SGNH_hydrolase_like_5 27.3 1.2E+02 0.0026 28.4 5.1 46 335-380 47-101 (183)
490 PRK05479 ketol-acid reductoiso 27.0 2.8E+02 0.0061 28.4 8.1 84 281-377 21-107 (330)
491 cd08268 MDR2 Medium chain dehy 26.9 4.9E+02 0.011 24.7 9.7 88 279-378 147-243 (328)
492 PF12242 Eno-Rase_NADH_b: NAD( 26.9 1.7E+02 0.0036 23.7 5.1 32 276-307 38-73 (78)
493 TIGR01081 mpl UDP-N-acetylmura 26.6 1E+02 0.0022 32.4 5.0 60 285-348 10-70 (448)
494 cd08286 FDH_like_ADH2 formalde 26.3 3.8E+02 0.0082 26.4 8.9 86 281-378 171-266 (345)
495 PRK06274 indolepyruvate oxidor 26.0 2.9E+02 0.0062 25.4 7.5 68 293-378 25-96 (197)
496 PLN02712 arogenate dehydrogena 25.8 3.1E+02 0.0066 30.9 8.8 81 279-372 54-137 (667)
497 PRK10206 putative oxidoreducta 25.7 2.5E+02 0.0054 28.5 7.6 62 281-345 5-71 (344)
498 COG3414 SgaB Phosphotransferas 25.2 3.6E+02 0.0079 22.3 7.1 11 336-346 47-57 (93)
499 PRK09260 3-hydroxybutyryl-CoA 25.2 4.4E+02 0.0095 25.7 9.0 89 279-376 3-115 (288)
500 cd08238 sorbose_phosphate_red 25.0 4.6E+02 0.0099 27.0 9.5 87 279-376 178-286 (410)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=3.3e-36 Score=309.70 Aligned_cols=210 Identities=31% Similarity=0.484 Sum_probs=170.6
Q ss_pred HHHHcCCCCC-CCCccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccchhhhhhhccCCCCccCCccccccccccc
Q 043503 174 RLMLKGCEPL-PRRRCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKAPGFFDCKDCFDLQGREKS 252 (430)
Q Consensus 174 ~l~~~~c~pl-prrrC~~~~p~~y~~P~pwP~s~w~~p~d~~~~W~~y~c~~~~~l~~~k~~~g~~~C~~cFd~~~~e~~ 252 (430)
+.+||||||. ++.+|++|+|++|+.|+|||+|+ +++| |+|++|+.|++.|..|+| +..+++
T Consensus 22 ~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SR-------d~iW--~~Nvph~~L~~~K~~qnW---------v~~~gd 83 (506)
T PF03141_consen 22 EHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSR-------DYIW--YANVPHTKLAEEKADQNW---------VRVEGD 83 (506)
T ss_pred cEeeccCcCCCCCCccccCCCccCCCCCCCCccc-------ceee--ecccCchHHhhhcccccc---------eeecCC
Confidence 5688999984 66699999999999999999998 8999 899999999999999999 566777
Q ss_pred ceeecCCchhH------HHHHHHcc----CCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEec-CCChhHHHHHHhcCC
Q 043503 253 RWLIDNGKLDY------GIDQVLSM----KPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSL-NLDGPFNSFIASRGL 321 (430)
Q Consensus 253 ~~~~~~~~~~~------~id~lL~~----~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdi-D~s~~~le~a~~rg~ 321 (430)
.+.|+++...| +++++... ..++.+|++||+|||+|+|+++|.++++.++.+.+ |.++...++|.+||+
T Consensus 84 ~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGv 163 (506)
T PF03141_consen 84 KFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGV 163 (506)
T ss_pred EEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCc
Confidence 77777655443 35544433 35689999999999999999999999998877655 355678899999998
Q ss_pred eeEEEc-ccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc---C---cHHHHHHHH
Q 043503 322 ISMHIS-VSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS---Q---LNETYVPML 394 (430)
Q Consensus 322 i~~~~~-d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~---~---~~~~~~~ll 394 (430)
..++.. ..++|||++++||+|||++|+..|.+++ ..+|.|++|+|||||+||++..-.... + ....+..+.
T Consensus 164 pa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~ 241 (506)
T PF03141_consen 164 PAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLA 241 (506)
T ss_pred chhhhhhccccccCCccchhhhhcccccccchhcc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHH
Confidence 655543 4799999999999999999999999874 579999999999999999987665421 1 223466667
Q ss_pred HHcCCEEEE
Q 043503 395 DRIGFKKLR 403 (430)
Q Consensus 395 ~~~Gfk~l~ 403 (430)
+..-++.+.
T Consensus 242 ~~lCW~~va 250 (506)
T PF03141_consen 242 KSLCWKKVA 250 (506)
T ss_pred HHHHHHHhe
Confidence 777766554
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.73 E-value=8.4e-17 Score=154.91 Aligned_cols=101 Identities=23% Similarity=0.390 Sum_probs=88.9
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcCC------eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGL------ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~------i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||+|||||.++..+++. ..+|+++ |+++.|++.++++-. +.|+++|++.|||+|++||+|.+++.++
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g~g~v~~~--D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVGTGEVVGL--DISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcCCceEEEE--ECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 45699999999999999998 3678887 888999999988721 8899999999999999999999999996
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
+ +++ .+.+|+|++|||||||.+++.+|....
T Consensus 131 n-v~d--~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 131 N-VTD--IDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred c-CCC--HHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 6 666 899999999999999999988877543
No 3
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.66 E-value=5.2e-16 Score=125.64 Aligned_cols=91 Identities=35% Similarity=0.583 Sum_probs=77.9
Q ss_pred EEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCC---eeEEEcccccCCCCCCceeEEEEccchhhcCCchh
Q 043503 281 LDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGL---ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 281 LDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
||+|||+|.++..++++ +.+|+++ |+++.+++.++++.. +.+..+|.+.+|+++++||+|++..++++ .++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~--D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-~~~-- 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGI--DISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHH-LED-- 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEE--ES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGG-SSH--
T ss_pred CEecCcCCHHHHHHHhccCCEEEEE--eCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceee-ccC--
Confidence 89999999999999999 8999998 777889998887633 66999999999999999999999999965 444
Q ss_pred HHHHHHHHHHhccCCcEEEE
Q 043503 357 LEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 357 l~~~L~ei~RvLrPGG~lvl 376 (430)
...++.++.|+|||||++++
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 89999999999999999985
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.66 E-value=4.6e-16 Score=149.94 Aligned_cols=102 Identities=26% Similarity=0.405 Sum_probs=78.0
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc------CCeeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR------GLISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r------g~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||||.++..++++ +.+|+++ |+++.|++.++++ ..+.++++|++.+|+++++||+|.|++.+
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~~v~~v--D~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fgl 126 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNGKVVGV--DISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGL 126 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS---EEEEE--ES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-G
T ss_pred CEEEEeCCChHHHHHHHHHHCCCccEEEEe--cCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhH
Confidence 35699999999999999886 3688888 8889999998865 24899999999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS 384 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~ 384 (430)
++ .++ ....++|++|+|||||.+++.+|.....
T Consensus 127 rn-~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 127 RN-FPD--RERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp GG--SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred Hh-hCC--HHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 76 555 7889999999999999999888775443
No 5
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.65 E-value=3.9e-16 Score=161.76 Aligned_cols=134 Identities=21% Similarity=0.277 Sum_probs=119.3
Q ss_pred CCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 272 KPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 272 ~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
+..+++|+|+|+..|.|.||++|.+..+.|+.+.+...++.+..+.+||++..++..++.+++.+++||+||+.+++..+
T Consensus 361 i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~ 440 (506)
T PF03141_consen 361 IKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLY 440 (506)
T ss_pred ccccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhh
Confidence 45678999999999999999999999999998877778899999999999999999999999999999999999999888
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEeccc
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMK 409 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~~k 409 (430)
...+.+..+|.||+|+|||||+++|-+.. +....+..++....++...+.....
T Consensus 441 ~~rC~~~~illEmDRILRP~G~~iiRD~~----~vl~~v~~i~~~lrW~~~~~d~e~g 494 (506)
T PF03141_consen 441 KDRCEMEDILLEMDRILRPGGWVIIRDTV----DVLEKVKKIAKSLRWEVRIHDTEDG 494 (506)
T ss_pred cccccHHHHHHHhHhhcCCCceEEEeccH----HHHHHHHHHHHhCcceEEEEecCCC
Confidence 88889999999999999999999996533 3557788899999998877665443
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.64 E-value=5.3e-15 Score=144.74 Aligned_cols=99 Identities=23% Similarity=0.271 Sum_probs=84.9
Q ss_pred cEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChhHHHHHHhcC---------CeeEEEcccccCCCCCCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGPFNSFIASRG---------LISMHISVSQRLPFFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~~le~a~~rg---------~i~~~~~d~~~lpf~d~sfDlV~~~ 345 (430)
.+|||+|||+|.++..++++ + .+|+++ |+++.|++.|+++. .+.++++|++.+|+++++||+|+++
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~~V~gv--D~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDGKVMGL--DFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 45699999999999999886 3 588888 78899999887541 3788999999999999999999999
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
.++++ .++ ...++.++.|+|||||++++.++..
T Consensus 153 ~~l~~-~~d--~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 153 YGLRN-VVD--RLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred ccccc-CCC--HHHHHHHHHHHcCcCcEEEEEECCC
Confidence 99954 565 7889999999999999999987664
No 7
>PLN02244 tocopherol O-methyltransferase
Probab=99.60 E-value=2.3e-14 Score=145.37 Aligned_cols=125 Identities=18% Similarity=0.313 Sum_probs=100.3
Q ss_pred CccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccc
Q 043503 276 TIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHV 347 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~ 347 (430)
...+|||||||+|.++..++++ +.+|+++ |+++.|++.++++ + .+.++++|+..+|+++++||+|++..+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gv--D~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGI--TLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEE--ECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 3456799999999999999987 8899998 6678887766543 3 378999999999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC----cC-----------------------cHHHHHHHHHHcCCE
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG----SQ-----------------------LNETYVPMLDRIGFK 400 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~----~~-----------------------~~~~~~~ll~~~Gfk 400 (430)
++| +++ ...++.++.|+|||||.|++.++.... .. ..+++..+++++||.
T Consensus 196 ~~h-~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 196 GEH-MPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred hhc-cCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCC
Confidence 866 555 678999999999999999987653210 00 134688899999999
Q ss_pred EEEEE
Q 043503 401 KLRWN 405 (430)
Q Consensus 401 ~l~~~ 405 (430)
.++..
T Consensus 273 ~v~~~ 277 (340)
T PLN02244 273 DIKTE 277 (340)
T ss_pred eeEee
Confidence 87654
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.59 E-value=3.4e-14 Score=139.24 Aligned_cols=138 Identities=18% Similarity=0.248 Sum_probs=107.8
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCCCce
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFENTL 339 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d~sf 339 (430)
.+.++..+......+|||||||+|..+..+++. +++|+++ |+++.+++.++++ ..+.+..+|+...|+++++|
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~gi--D~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGV--DICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEE--ECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 455555444334456799999999999999876 7899988 7788998888765 24888899998889999999
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC------------------cHHHHHHHHHHcCCEE
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ------------------LNETYVPMLDRIGFKK 401 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~------------------~~~~~~~ll~~~Gfk~ 401 (430)
|+|++..++.| .+......+++++.++|||||+|++.++...... ....|.++++.+||+.
T Consensus 119 D~V~s~~~l~h-~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 197 (263)
T PTZ00098 119 DMIYSRDAILH-LSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQN 197 (263)
T ss_pred EEEEEhhhHHh-CCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCe
Confidence 99999888866 4433478999999999999999999886542210 1256888999999998
Q ss_pred EEEE
Q 043503 402 LRWN 405 (430)
Q Consensus 402 l~~~ 405 (430)
+...
T Consensus 198 v~~~ 201 (263)
T PTZ00098 198 VVAK 201 (263)
T ss_pred eeEE
Confidence 8765
No 9
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.59 E-value=2.7e-14 Score=138.10 Aligned_cols=111 Identities=25% Similarity=0.426 Sum_probs=93.0
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCC-eeEEEcccccCCCCCCceeEEE
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGL-ISMHISVSQRLPFFENTLDIVH 343 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~-i~~~~~d~~~lpf~d~sfDlV~ 343 (430)
.+.++..++.....+|||+|||+|.++..+++.+.+|+++ |+++.|++.++++.. ..++++|++.+|+++++||+|+
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~--D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~ 108 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTAL--DLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAW 108 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEE--ECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEE
Confidence 3444454554445668999999999999999889999988 778999999988753 5788899999999999999999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
++.++ +|.++ ...++.++.|+|+|||.++++.+.
T Consensus 109 s~~~l-~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 109 SNLAV-QWCGN--LSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred ECchh-hhcCC--HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 98887 67877 789999999999999999998755
No 10
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.58 E-value=5e-14 Score=136.88 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=102.7
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEE
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVH 343 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~ 343 (430)
..++..++.....+|||+|||+|.++..++++ +.+|+++ |+++.|++.+++++ +.++++|++.++ ++++||+|+
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gv--D~s~~~~~~a~~~~-~~~~~~d~~~~~-~~~~fD~v~ 94 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEAL--DSSPEMVAAARERG-VDARTGDVRDWK-PKPDTDVVV 94 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHhcC-CcEEEcChhhCC-CCCCceEEE
Confidence 34444444334456799999999999999988 6788888 77899999998775 688899988775 568999999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc----------------------cC--------cCcHHHHHHH
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC----------------------FG--------SQLNETYVPM 393 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~----------------------~~--------~~~~~~~~~l 393 (430)
++.++ ||+++ ...++.++.++|||||++++..+.. .. ....+.+..+
T Consensus 95 ~~~~l-~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 171 (255)
T PRK14103 95 SNAAL-QWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAEL 171 (255)
T ss_pred Eehhh-hhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHH
Confidence 99988 56776 7889999999999999998852110 00 0023568889
Q ss_pred HHHcCCEEEEEEe
Q 043503 394 LDRIGFKKLRWNV 406 (430)
Q Consensus 394 l~~~Gfk~l~~~~ 406 (430)
++++||.+..+..
T Consensus 172 l~~aGf~v~~~~~ 184 (255)
T PRK14103 172 LTDAGCKVDAWET 184 (255)
T ss_pred HHhCCCeEEEEee
Confidence 9999998665554
No 11
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.55 E-value=5.4e-14 Score=141.57 Aligned_cols=123 Identities=16% Similarity=0.135 Sum_probs=101.1
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
.+|||||||+|.++..+++.|.+|+++ |+++.+++.|+++ + .+.+++++++.+++++++||+|+|..+++|
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~~V~GI--D~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGATVTGV--DAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCCEEEEE--eCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 367999999999999999889999988 7788998888754 1 378899999999888899999999999976
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeeccc--------------------cCc------CcHHHHHHHHHHcCCEEEEE
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC--------------------FGS------QLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~--------------------~~~------~~~~~~~~ll~~~Gfk~l~~ 404 (430)
+++ ...++.++.++|||||.++++.+-. .+. -..+++..+++++||++...
T Consensus 211 -v~d--~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 211 -VAN--PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred -cCC--HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 555 6789999999999999999875321 111 02467999999999998875
Q ss_pred E
Q 043503 405 N 405 (430)
Q Consensus 405 ~ 405 (430)
.
T Consensus 288 ~ 288 (322)
T PLN02396 288 A 288 (322)
T ss_pred e
Confidence 3
No 12
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.55 E-value=7.8e-14 Score=135.60 Aligned_cols=135 Identities=24% Similarity=0.371 Sum_probs=102.8
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCC-CCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLP-FFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lp-f~d 336 (430)
++.++..++. ...+|||+|||+|.++..+++++.+|+++ |+++.|++.|+++ | .+.+++++.+.++ +++
T Consensus 34 ~~~~l~~l~~-~~~~vLDiGcG~G~~a~~la~~g~~v~~v--D~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 34 LDRLLAELPP-RPLRVLDAGGGEGQTAIKLAELGHQVILC--DLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHHHhcCC-CCCEEEEeCCCchHHHHHHHHcCCEEEEE--ECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 3455554442 23467999999999999999999999988 7788998887764 3 2678888887764 567
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC------------------------------cCc
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG------------------------------SQL 386 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~------------------------------~~~ 386 (430)
++||+|++..+++ |+++ ...++.++.++|||||++++..+-... .-.
T Consensus 111 ~~fD~V~~~~vl~-~~~~--~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 187 (255)
T PRK11036 111 TPVDLILFHAVLE-WVAD--PKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLD 187 (255)
T ss_pred CCCCEEEehhHHH-hhCC--HHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCC
Confidence 8999999999985 4655 678999999999999999875322100 012
Q ss_pred HHHHHHHHHHcCCEEEEEE
Q 043503 387 NETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 387 ~~~~~~ll~~~Gfk~l~~~ 405 (430)
.+++..+++++||+++.+.
T Consensus 188 ~~~l~~~l~~aGf~~~~~~ 206 (255)
T PRK11036 188 PEQVYQWLEEAGWQIMGKT 206 (255)
T ss_pred HHHHHHHHHHCCCeEeeee
Confidence 3678889999999988644
No 13
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.54 E-value=2.1e-13 Score=127.94 Aligned_cols=124 Identities=15% Similarity=0.221 Sum_probs=92.5
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+|||+|||+|.++..++++|.+|+++ |+++.+++.++++ +. +.+.+.|...+++ +++||+|+|+.+++ +
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gv--D~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~-~ 107 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAW--DKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYDFILSTVVLM-F 107 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEE--eCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcCEEEEecchh-h
Confidence 345999999999999999999999998 7778888776543 33 6777888877776 46799999998884 4
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeeccccCc-------C---cHHHHHHHHHHcCCEEEEEEec
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-------Q---LNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-------~---~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
.+......++.++.++|+|||++++..++.... . ...++.+.++ ||+++.....
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~ 171 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNED 171 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCC
Confidence 555468899999999999999976544442211 1 1234666665 8998876543
No 14
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.53 E-value=2e-13 Score=137.57 Aligned_cols=126 Identities=24% Similarity=0.228 Sum_probs=97.6
Q ss_pred ccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHH--hc-----CCeeEEEcccccCCCCCCceeEEEEccch
Q 043503 277 IRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIA--SR-----GLISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~--~r-----g~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.++|||||||+|.++..+++.|. .|+|+ |+++.++..+. .+ ..+.+..++++.+|+ +++||+|+|..++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~Gi--D~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGI--DPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 35679999999999999999864 58887 77777765322 11 237888999999998 7899999999999
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC--------------------cHHHHHHHHHHcCCEEEEEEecc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ--------------------LNETYVPMLDRIGFKKLRWNVGM 408 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~--------------------~~~~~~~ll~~~Gfk~l~~~~~~ 408 (430)
+| ..+ ...++.+++++|+|||.++++.+...+.. ....+..+++++||+.++.....
T Consensus 200 ~H-~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 200 YH-RRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred hc-cCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCC
Confidence 65 555 77899999999999999998765432111 12467889999999998876443
No 15
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.53 E-value=3e-13 Score=128.94 Aligned_cols=98 Identities=23% Similarity=0.335 Sum_probs=80.9
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.++..+++. +.+|+++ |+++.+++.++++ + .+.++.+|...+++++++||+|++..++
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGL--DFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGL 124 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccc
Confidence 46799999999999999876 3688888 6678888777654 2 3788889998888888999999998888
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
+ +.++ ...++.++.|+|+|||++++.++.
T Consensus 125 ~-~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 125 R-NVPD--YMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred c-cCCC--HHHHHHHHHHHcCcCeEEEEEECC
Confidence 4 4565 678999999999999999886543
No 16
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.51 E-value=1.3e-13 Score=122.59 Aligned_cols=118 Identities=24% Similarity=0.372 Sum_probs=90.9
Q ss_pred ccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchh
Q 043503 277 IRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
..+|||+|||+|.++..+++.+.+++++ |+++.+++. ........+....+.++++||+|+|+.+++| +++
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~~~~g~--D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~-~~d-- 93 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAKRGFEVTGV--DISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEH-LPD-- 93 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHHTTSEEEEE--ESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGG-SSH--
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCEEEEE--ECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhh-ccc--
Confidence 3457999999999999999999999998 666777666 2233333333444567899999999999955 666
Q ss_pred HHHHHHHHHHhccCCcEEEEeeccccC-----------cC---------cHHHHHHHHHHcCCEEEE
Q 043503 357 LEFTLYDIYRLLRPGGIFWLDRFFCFG-----------SQ---------LNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 357 l~~~L~ei~RvLrPGG~lvl~~f~~~~-----------~~---------~~~~~~~ll~~~Gfk~l~ 403 (430)
...+|.++.++|||||+++++.+.... .. ..+.+..+++++||++++
T Consensus 94 ~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 889999999999999999998776311 00 235688899999998875
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.50 E-value=4.6e-13 Score=141.26 Aligned_cols=135 Identities=21% Similarity=0.338 Sum_probs=104.8
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc--C---CeeEEEcccccCCCCCCce
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR--G---LISMHISVSQRLPFFENTL 339 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r--g---~i~~~~~d~~~lpf~d~sf 339 (430)
+.++.........+|||||||+|.++..+++. +.+|+++ |+++.+++.|+++ + .+.+.++|+...++++++|
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gv--DiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGI--DLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEE--ECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 33444333333456799999999999999886 7889988 6778888888654 2 3788999998888888999
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc-----------------CcHHHHHHHHHHcCCEEE
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-----------------QLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-----------------~~~~~~~~ll~~~Gfk~l 402 (430)
|+|+|..++.| +++ ...++.+++|+|||||.+++.++..... ...+.+.++++++||+.+
T Consensus 334 D~I~s~~~l~h-~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i 410 (475)
T PLN02336 334 DVIYSRDTILH-IQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDV 410 (475)
T ss_pred EEEEECCcccc-cCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeee
Confidence 99999989865 555 7789999999999999999987653211 023457889999999988
Q ss_pred EEE
Q 043503 403 RWN 405 (430)
Q Consensus 403 ~~~ 405 (430)
...
T Consensus 411 ~~~ 413 (475)
T PLN02336 411 IAE 413 (475)
T ss_pred eee
Confidence 653
No 18
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.50 E-value=6.8e-13 Score=133.17 Aligned_cols=140 Identities=21% Similarity=0.164 Sum_probs=100.8
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHH---h----cCCeeEEEcccccCCCCCC
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIA---S----RGLISMHISVSQRLPFFEN 337 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~---~----rg~i~~~~~d~~~lpf~d~ 337 (430)
+.++..+.....++|||+|||+|.++..++..|. .|+|+ |+++.|+..+. . ...+.+...+.+.++.. .
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~Gi--DpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~ 187 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGI--DPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-Y 187 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-C
Confidence 3444433323335679999999999999998875 57777 77887775432 1 13367777888888754 4
Q ss_pred ceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC--------------------cHHHHHHHHHHc
Q 043503 338 TLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ--------------------LNETYVPMLDRI 397 (430)
Q Consensus 338 sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~--------------------~~~~~~~ll~~~ 397 (430)
+||+|+|+.++.| .++ ...+|.+++|+|||||.|++..+...+.. ....+...++++
T Consensus 188 ~FD~V~s~gvL~H-~~d--p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~a 264 (314)
T TIGR00452 188 AFDTVFSMGVLYH-RKS--PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKV 264 (314)
T ss_pred CcCEEEEcchhhc-cCC--HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHC
Confidence 8999999999966 455 77899999999999999998765432211 124567889999
Q ss_pred CCEEEEEEeccccc
Q 043503 398 GFKKLRWNVGMKLD 411 (430)
Q Consensus 398 Gfk~l~~~~~~k~~ 411 (430)
||+.++......+.
T Consensus 265 GF~~V~i~~~~~tt 278 (314)
T TIGR00452 265 GFENFRILDVLKTT 278 (314)
T ss_pred CCeEEEEEeccCCC
Confidence 99999877554443
No 19
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.48 E-value=4.8e-13 Score=128.25 Aligned_cols=117 Identities=24% Similarity=0.357 Sum_probs=92.5
Q ss_pred cEEEEEcCCccHHHHHHHHc--C------CEEEEEecCCChhHHHHHHhcC----C-----eeEEEcccccCCCCCCcee
Q 043503 278 RIGLDIGGGTGTFAARMRER--N------VTIITTSLNLDGPFNSFIASRG----L-----ISMHISVSQRLPFFENTLD 340 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g------~~Vv~vdiD~s~~~le~a~~rg----~-----i~~~~~d~~~lpf~d~sfD 340 (430)
-.+||++||||.+|..+.+. . .+|+.+ |++++|+..+++|. + +.++++|++.|||++++||
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~--Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D 179 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVL--DINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD 179 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccccCCCCceEEEE--eCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence 45699999999999999887 2 577777 77899998877662 2 7889999999999999999
Q ss_pred EEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEE
Q 043503 341 IVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 341 lV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
+....+.+++|. + .++.|+|++|||||||+|.+.+|-..+. +.+..++...-|+++
T Consensus 180 ~yTiafGIRN~t-h--~~k~l~EAYRVLKpGGrf~cLeFskv~~---~~l~~fy~~ysf~Vl 235 (296)
T KOG1540|consen 180 AYTIAFGIRNVT-H--IQKALREAYRVLKPGGRFSCLEFSKVEN---EPLKWFYDQYSFDVL 235 (296)
T ss_pred eEEEecceecCC-C--HHHHHHHHHHhcCCCcEEEEEEcccccc---HHHHHHHHhhhhhhh
Confidence 999999998865 4 7899999999999999999887764331 334444444444443
No 20
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.47 E-value=1.5e-12 Score=131.91 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=99.1
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc---CCeeEEEcccccCCCCCCceeEEEEccchhhcC
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR---GLISMHISVSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r---g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
.+|||+|||+|.++..+++. +.+|+++ |.++.|++.++++ ..+.++.+|.+.+++++++||+|+++.++++ .
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~~~VtgV--D~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~-~ 191 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDAKNVTIL--DQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEY-W 191 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhh-C
Confidence 45799999999999988875 5688887 7788998888775 2378899999999999999999999988855 5
Q ss_pred CchhHHHHHHHHHHhccCCcEEEEeeccccC-------------cCcHHHHHHHHHHcCCEEEEEEe
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG-------------SQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~-------------~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
++ ....++++.|+|+|||.+++.+..... ....+++.++++++||+.+++..
T Consensus 192 ~d--~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 192 PD--PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CC--HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 55 567999999999999999875432110 11246788999999999888764
No 21
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.47 E-value=1.9e-13 Score=130.46 Aligned_cols=96 Identities=24% Similarity=0.395 Sum_probs=82.0
Q ss_pred EEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCCCceeEEEEccchhhcCCc
Q 043503 280 GLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 280 VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d 354 (430)
|||+|||-|.++..||+.|+.|+++ |+++.+++.|+.+ |. +.+.+...+.+....++||+|+|+.+++| .++
T Consensus 63 vLDvGCGgG~Lse~mAr~Ga~Vtgi--D~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH-v~d 139 (243)
T COG2227 63 VLDVGCGGGILSEPLARLGASVTGI--DASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH-VPD 139 (243)
T ss_pred EEEecCCccHhhHHHHHCCCeeEEe--cCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc-cCC
Confidence 4999999999999999999999998 7789989888754 33 55777777777765689999999999987 666
Q ss_pred hhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 355 SMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
.+.+++.+.+.+||||.+++++.-
T Consensus 140 --p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 140 --PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred --HHHHHHHHHHHcCCCcEEEEeccc
Confidence 778999999999999999987643
No 22
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.46 E-value=3.7e-13 Score=113.33 Aligned_cols=97 Identities=22% Similarity=0.309 Sum_probs=77.5
Q ss_pred EEEEEcCCccHHHHHHHH--cCCEEEEEecCCChhHHHHHHhc-------CCeeEEEccc-ccCCCCCCceeEEEEcc-c
Q 043503 279 IGLDIGGGTGTFAARMRE--RNVTIITTSLNLDGPFNSFIASR-------GLISMHISVS-QRLPFFENTLDIVHSMH-V 347 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~--~g~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~-~~lpf~d~sfDlV~~~~-~ 347 (430)
+|||+|||+|.++..+++ .+.+|+++ |+++.+++.++++ ..+.++++|+ .... ....||+|++.. +
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGARVVGV--DISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-FLEPFDLVICSGFT 80 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSEEEEE--ESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-TSSCEEEEEECSGS
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCEEEEE--eCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-cCCCCCEEEECCCc
Confidence 459999999999999999 59999998 6678888877765 2389999999 3333 345699999988 5
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+.++.+.+....++..+.+.|+|||++++..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5434433457889999999999999999864
No 23
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.46 E-value=1.5e-12 Score=127.60 Aligned_cols=124 Identities=25% Similarity=0.418 Sum_probs=97.8
Q ss_pred cEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|..+..+++. + .+|+++ |+++.|++.++++ + .+.++.+|++.+++++++||+|+++.++
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gv--D~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGV--DMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVI 156 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEE--CCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcc
Confidence 45699999999988777665 3 468887 7788999888764 2 3778889999999888999999998887
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc-------------------CcHHHHHHHHHHcCCEEEEEEe
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-------------------QLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-------------------~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
++.++ ...++.++.|+|||||+|++.++...+. ...+++.+++++.||..+....
T Consensus 157 -~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 157 -NLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred -cCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 45666 6789999999999999999987653321 1234688899999999876543
No 24
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.42 E-value=5.9e-13 Score=129.07 Aligned_cols=146 Identities=18% Similarity=0.163 Sum_probs=101.1
Q ss_pred cEEEEEcCCccHHHHHHHHc----CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER----NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~----g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~ 346 (430)
.+|||+|||+|..+..+++. +.+++++ |+++.|++.++++ + .+.++++|+..++++ .+|+|+++.
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gv--D~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAI--DNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEE--eCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 45699999999999888772 6788888 7889999888765 2 388899999888764 489999988
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC-c----HHHHHHHHHHcCCEEEEEEe-------cccccCCC
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-L----NETYVPMLDRIGFKKLRWNV-------GMKLDRGV 414 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-~----~~~~~~ll~~~Gfk~l~~~~-------~~k~~~g~ 414 (430)
++++ +++.....++.+++++|||||.|++.+.+..... . .+.+.......||....+.. ......-.
T Consensus 134 ~l~~-l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~ 212 (247)
T PRK15451 134 TLQF-LEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVE 212 (247)
T ss_pred HHHh-CCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHH
Confidence 8854 5554578899999999999999999875533222 1 22344445556776432211 11112233
Q ss_pred chhHHHhHhhccCC
Q 043503 415 KKNEWYFSAVLEKP 428 (430)
Q Consensus 415 ~~~~~~lsa~leKp 428 (430)
...+++-+++|..|
T Consensus 213 ~~~~~L~~aGF~~v 226 (247)
T PRK15451 213 THKARLHKAGFEHS 226 (247)
T ss_pred HHHHHHHHcCchhH
Confidence 44555666666654
No 25
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.42 E-value=2.8e-12 Score=124.66 Aligned_cols=187 Identities=20% Similarity=0.182 Sum_probs=117.8
Q ss_pred CCCCCCCCCCcHHHHHHHHHcCCCCCCCC-ccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccchhhhhhhccCCC
Q 043503 158 TYDIGGECPVDDVFAQRLMLKGCEPLPRR-RCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKAPG 236 (430)
Q Consensus 158 ~y~~~~~cp~d~~~~~~l~~~~c~plprr-rC~~~~p~~y~~P~pwP~s~w~~p~d~~~~W~~y~c~~~~~l~~~k~~~g 236 (430)
.|+.......||+ +.|.+++.|.... ||.+.++-....+ |.. ..+ ..+....+|
T Consensus 45 ~~~~~~~~~~dw~---~~w~~~~~p~~~g~~~~i~p~~~~~~~---~~~--------~~i-----------~i~p~~afg 99 (250)
T PRK00517 45 TYTIEEVEDEDWE---REWKKYFHPIRIGDRLWIVPSWEDPPD---PDE--------INI-----------ELDPGMAFG 99 (250)
T ss_pred ceEEEEcCchhHH---HHHHHHCCCEEEcCCEEEECCCcCCCC---CCe--------EEE-----------EECCCCccC
Confidence 5666677888999 8999999999877 8988886542211 111 111 122222333
Q ss_pred CccCCcccccccccccceeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCE-EEEEecCCChhHHHH
Q 043503 237 FFDCKDCFDLQGREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVT-IITTSLNLDGPFNSF 315 (430)
Q Consensus 237 ~~~C~~cFd~~~~e~~~~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~-Vv~vdiD~s~~~le~ 315 (430)
. +.+.. ....++.+..... ...+|||+|||+|.++..++..|.. |+++ |+++.+++.
T Consensus 100 t----------g~h~t--------t~~~l~~l~~~~~--~~~~VLDiGcGsG~l~i~~~~~g~~~v~gi--Dis~~~l~~ 157 (250)
T PRK00517 100 T----------GTHPT--------TRLCLEALEKLVL--PGKTVLDVGCGSGILAIAAAKLGAKKVLAV--DIDPQAVEA 157 (250)
T ss_pred C----------CCCHH--------HHHHHHHHHhhcC--CCCEEEEeCCcHHHHHHHHHHcCCCeEEEE--ECCHHHHHH
Confidence 2 11111 1122222222221 2245699999999999988887664 8888 666888877
Q ss_pred HHhc----CCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHH
Q 043503 316 IASR----GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYV 391 (430)
Q Consensus 316 a~~r----g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~ 391 (430)
++++ +.-.. ..++..+.+||+|+++... + .+..++.++.++|||||+++++++.. ...+.+.
T Consensus 158 A~~n~~~~~~~~~-----~~~~~~~~~fD~Vvani~~-~-----~~~~l~~~~~~~LkpgG~lilsgi~~---~~~~~v~ 223 (250)
T PRK00517 158 ARENAELNGVELN-----VYLPQGDLKADVIVANILA-N-----PLLELAPDLARLLKPGGRLILSGILE---EQADEVL 223 (250)
T ss_pred HHHHHHHcCCCce-----EEEccCCCCcCEEEEcCcH-H-----HHHHHHHHHHHhcCCCcEEEEEECcH---hhHHHHH
Confidence 7655 32010 1112122379999995332 2 25678999999999999999987663 2346678
Q ss_pred HHHHHcCCEEEEEE
Q 043503 392 PMLDRIGFKKLRWN 405 (430)
Q Consensus 392 ~ll~~~Gfk~l~~~ 405 (430)
..+.+.||++.+..
T Consensus 224 ~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 224 EAYEEAGFTLDEVL 237 (250)
T ss_pred HHHHHCCCEEEEEE
Confidence 88999999988644
No 26
>PRK05785 hypothetical protein; Provisional
Probab=99.41 E-value=2.1e-12 Score=123.92 Aligned_cols=87 Identities=16% Similarity=0.284 Sum_probs=76.6
Q ss_pred cEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchh
Q 043503 278 RIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
.+|||+|||||.++..++++ +.+|+++ |+++.|++.++++. .++++|++.+|+++++||+|+++.++++ .++
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~~v~gv--D~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~-~~d-- 125 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKYYVVAL--DYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHA-SDN-- 125 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCCEEEEE--CCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhc-cCC--
Confidence 45699999999999999988 6889988 88999999988764 4678899999999999999999999954 666
Q ss_pred HHHHHHHHHHhccCC
Q 043503 357 LEFTLYDIYRLLRPG 371 (430)
Q Consensus 357 l~~~L~ei~RvLrPG 371 (430)
.+..++|+.|+|||+
T Consensus 126 ~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 126 IEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHHHHHhcCc
Confidence 789999999999994
No 27
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.41 E-value=1.9e-12 Score=121.29 Aligned_cols=123 Identities=12% Similarity=0.130 Sum_probs=89.4
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCCCceeEEEEccchhhcCC
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~ 353 (430)
+|||+|||+|.++..++++|.+|+++ |+++.|++.++++ +. +.+...|....+++ ++||+|+++.++++ .+
T Consensus 33 ~vLDiGcG~G~~a~~la~~g~~V~~i--D~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~-~~ 108 (195)
T TIGR00477 33 KTLDLGCGQGRNSLYLSLAGYDVRAW--DHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMF-LQ 108 (195)
T ss_pred cEEEeCCCCCHHHHHHHHCCCeEEEE--ECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEeccccc-CC
Confidence 46999999999999999999999998 6678887765433 43 56666777665653 57999999888854 55
Q ss_pred chhHHHHHHHHHHhccCCcEEEEeeccccCc-------C---cHHHHHHHHHHcCCEEEEEEec
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-------Q---LNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-------~---~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
......++.++.|+|+|||++++..++.... . ...++.+.+. +|.++.+...
T Consensus 109 ~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~ 170 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEA 170 (195)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeecc
Confidence 4457899999999999999966654432111 1 1245555554 5888887744
No 28
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.41 E-value=3.8e-12 Score=120.73 Aligned_cols=121 Identities=24% Similarity=0.290 Sum_probs=95.4
Q ss_pred EEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccchh
Q 043503 279 IGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
+|||||||+|.++..+++. +.+|+++ |+++.+.+.++++ | .+.++..|....+++ ++||+|++..+++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gi--d~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGY--TISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHH
Confidence 5799999999999999887 4788888 6678887777654 3 378888888666654 5899999998886
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc------------CcHHHHHHHHHHcCCEEEEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS------------QLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~------------~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
| +++ ...++.++.++|+|||++++.++..... .....|.+++.+.||+.++..
T Consensus 79 ~-~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 79 H-IKD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred h-CCC--HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 5 555 7899999999999999999987643110 013568899999999998755
No 29
>PRK08317 hypothetical protein; Provisional
Probab=99.41 E-value=8.7e-12 Score=117.75 Aligned_cols=133 Identities=20% Similarity=0.281 Sum_probs=99.5
Q ss_pred HHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc-----CCeeEEEcccccCCCCCCce
Q 043503 268 VLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR-----GLISMHISVSQRLPFFENTL 339 (430)
Q Consensus 268 lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r-----g~i~~~~~d~~~lpf~d~sf 339 (430)
++.........+|||+|||+|.++..++++ +.+++++ |+++.+++.++++ ..+.+...|...+++++++|
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~--d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGI--DRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEE--eCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 333333333456799999999999999886 3678888 6678888877765 23788888988888888999
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc-----cCc-------------------CcHHHHHHHHH
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC-----FGS-------------------QLNETYVPMLD 395 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~-----~~~-------------------~~~~~~~~ll~ 395 (430)
|+|++..++.+ .++ ...++.++.++|+|||++++..... ... .....+..+++
T Consensus 89 D~v~~~~~~~~-~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 165 (241)
T PRK08317 89 DAVRSDRVLQH-LED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFR 165 (241)
T ss_pred eEEEEechhhc-cCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 99999999855 555 7889999999999999998865321 000 01235778999
Q ss_pred HcCCEEEEEE
Q 043503 396 RIGFKKLRWN 405 (430)
Q Consensus 396 ~~Gfk~l~~~ 405 (430)
+.||..+...
T Consensus 166 ~aGf~~~~~~ 175 (241)
T PRK08317 166 EAGLTDIEVE 175 (241)
T ss_pred HcCCCceeEE
Confidence 9999866554
No 30
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.41 E-value=3.5e-12 Score=123.78 Aligned_cols=105 Identities=23% Similarity=0.306 Sum_probs=84.9
Q ss_pred HHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcC-CeeEEEcccccCCCCCCceeEEE
Q 043503 267 QVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRG-LISMHISVSQRLPFFENTLDIVH 343 (430)
Q Consensus 267 ~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg-~i~~~~~d~~~lpf~d~sfDlV~ 343 (430)
.++..++.....+|||||||+|.++..++++ +.+|+++ |+++.|++.++++. .+.++.+|+..+. ++++||+|+
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gv--D~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~ 98 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGI--DSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIF 98 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEE
Confidence 3444344344456799999999999999987 5789988 77889999988763 3788888887764 456999999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
++.++ ||+++ ...++.++.++|||||.+++.
T Consensus 99 ~~~~l-~~~~d--~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 99 ANASL-QWLPD--HLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EccCh-hhCCC--HHHHHHHHHHhcCCCcEEEEE
Confidence 99988 56776 678999999999999999885
No 31
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.41 E-value=3.1e-12 Score=123.02 Aligned_cols=99 Identities=20% Similarity=0.238 Sum_probs=81.6
Q ss_pred cEEEEEcCCccHHHHHHHHc----CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER----NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~----g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~ 346 (430)
.+|||+|||+|.++..++++ +.+++++ |+++.|++.|+++ + .+.++++|+..++++ .+|+|++..
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gv--D~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGI--DNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEE--eCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 45699999999999999874 5789988 7789999888764 2 378899999888865 489999999
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
+++ +.++.....++.++.|+|+|||.|++.+.+.
T Consensus 131 ~l~-~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 131 TLQ-FLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred chh-hCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 884 4655457889999999999999999987654
No 32
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.40 E-value=5.3e-13 Score=111.34 Aligned_cols=90 Identities=29% Similarity=0.437 Sum_probs=75.0
Q ss_pred EEEEcCCccHHHHHHHHcC-----CEEEEEecCCChhHHHHHHhcC-----CeeEEEcccccCCCCCCceeEEEEccc-h
Q 043503 280 GLDIGGGTGTFAARMRERN-----VTIITTSLNLDGPFNSFIASRG-----LISMHISVSQRLPFFENTLDIVHSMHV-L 348 (430)
Q Consensus 280 VLDIGcGtG~~a~~La~~g-----~~Vv~vdiD~s~~~le~a~~rg-----~i~~~~~d~~~lpf~d~sfDlV~~~~~-L 348 (430)
|||+|||+|..+..+++.. .+++++ |+++.|++.++++. .+.++++|+..+++.+++||+|+|+.. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gv--D~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGV--DISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEE--ES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEE--ECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 5999999999999999873 788888 77899999888764 389999999999988999999999655 7
Q ss_pred hhcCCchhHHHHHHHHHHhccCCc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGG 372 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG 372 (430)
.| .+++.+..++.++.++|||||
T Consensus 79 ~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred CC-CCHHHHHHHHHHHHHHhCCCC
Confidence 55 666679999999999999998
No 33
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.38 E-value=1.9e-12 Score=120.66 Aligned_cols=172 Identities=18% Similarity=0.185 Sum_probs=110.8
Q ss_pred ccceeecCCchhH-HHHHHHc-cCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeE
Q 043503 251 KSRWLIDNGKLDY-GIDQVLS-MKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISM 324 (430)
Q Consensus 251 ~~~~~~~~~~~~~-~id~lL~-~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~ 324 (430)
.+-|.+.....+. ....++. .+|...++.+||+|||.|.++..|+.+.-.++++ |+++..++.|++| ..+.+
T Consensus 16 ~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~Llav--Dis~~Al~~Ar~Rl~~~~~V~~ 93 (201)
T PF05401_consen 16 DDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAV--DISPRALARARERLAGLPHVEW 93 (201)
T ss_dssp SSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEE--ES-HHHHHHHHHHTTT-SSEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEE--eCCHHHHHHHHHhcCCCCCeEE
Confidence 3445554443333 1234443 4688888999999999999999999997788888 7788889999887 33899
Q ss_pred EEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC------cCcHHHHHHHHHHcC
Q 043503 325 HISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG------SQLNETYVPMLDRIG 398 (430)
Q Consensus 325 ~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~------~~~~~~~~~ll~~~G 398 (430)
++.+.... .|+++||+||++.+++.+.+.+.+..++..+...|+|||.+++.++-... ..-.+.+..++.+.=
T Consensus 94 ~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~ 172 (201)
T PF05401_consen 94 IQADVPEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHL 172 (201)
T ss_dssp EES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHS
T ss_pred EECcCCCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHh
Confidence 99988664 47899999999999965444456889999999999999999998764211 112356777777764
Q ss_pred CEEEEEEecccccCCCchhHHHhHhhccCCCC
Q 043503 399 FKKLRWNVGMKLDRGVKKNEWYFSAVLEKPMT 430 (430)
Q Consensus 399 fk~l~~~~~~k~~~g~~~~~~~lsa~leKp~~ 430 (430)
-++....- .|....+--+-+-|+||++
T Consensus 173 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 199 (201)
T PF05401_consen 173 TEVERVEC-----RGGSPNEDCLLARFRNPVS 199 (201)
T ss_dssp EEEEEEEE-----E-SSTTSEEEEEEEE--SS
T ss_pred hheeEEEE-----cCCCCCCceEeeeecCCcC
Confidence 33333321 1223344455667777764
No 34
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.38 E-value=8.5e-13 Score=131.25 Aligned_cols=192 Identities=19% Similarity=0.245 Sum_probs=114.8
Q ss_pred CCCCCCCCCCcHHHHHHHHHcCCCCCCCC-ccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccchhhhhhhccCCC
Q 043503 158 TYDIGGECPVDDVFAQRLMLKGCEPLPRR-RCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKAPG 236 (430)
Q Consensus 158 ~y~~~~~cp~d~~~~~~l~~~~c~plprr-rC~~~~p~~y~~P~pwP~s~w~~p~d~~~~W~~y~c~~~~~l~~~k~~~g 236 (430)
.++....-..||. +.|.++++|++.. |+.+.|+-.-. |. +++.-++ ..++.+++|
T Consensus 86 ~~~~~~~~~~dW~---~~Wk~~~~P~~vg~~~~I~P~w~~~-~~---------~~~~~~I-----------~idPg~AFG 141 (295)
T PF06325_consen 86 EIEIEEIEEEDWE---EAWKKYFKPIRVGDRLVIVPSWEEY-PE---------PPDEIVI-----------EIDPGMAFG 141 (295)
T ss_dssp --EEEE--HHCHH---HHHHHH---EEECTTEEEEETT-----S---------STTSEEE-----------EESTTSSS-
T ss_pred ceEEEEeccccch---HHHHhcCccEEECCcEEEECCCccc-CC---------CCCcEEE-----------EECCCCccc
Confidence 4555566667898 8999999999887 78887775322 11 1111122 256677777
Q ss_pred CccCCcccccccccccceeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCCh--hHH
Q 043503 237 FFDCKDCFDLQGREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDG--PFN 313 (430)
Q Consensus 237 ~~~C~~cFd~~~~e~~~~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~--~~l 313 (430)
. |.+.++ ..-+..+-..... .++|||+|||+|.+++..+..|+ +|+++|+|..+ ...
T Consensus 142 T----------G~H~TT--------~lcl~~l~~~~~~--g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~ 201 (295)
T PF06325_consen 142 T----------GHHPTT--------RLCLELLEKYVKP--GKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR 201 (295)
T ss_dssp S----------SHCHHH--------HHHHHHHHHHSST--TSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH
T ss_pred C----------CCCHHH--------HHHHHHHHHhccC--CCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH
Confidence 7 444333 1212222222222 24579999999999999999976 79999777543 233
Q ss_pred HHHHhcCC-eeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHH
Q 043503 314 SFIASRGL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVP 392 (430)
Q Consensus 314 e~a~~rg~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ 392 (430)
++++.+|. ..+.+..... .....||+|+++ .+.+ -+..++..+.+.|+|||+++++.++. ...+.+.+
T Consensus 202 ~N~~~N~~~~~~~v~~~~~--~~~~~~dlvvAN-I~~~-----vL~~l~~~~~~~l~~~G~lIlSGIl~---~~~~~v~~ 270 (295)
T PF06325_consen 202 ENAELNGVEDRIEVSLSED--LVEGKFDLVVAN-ILAD-----VLLELAPDIASLLKPGGYLILSGILE---EQEDEVIE 270 (295)
T ss_dssp HHHHHTT-TTCEEESCTSC--TCCS-EEEEEEE-S-HH-----HHHHHHHHCHHHEEEEEEEEEEEEEG---GGHHHHHH
T ss_pred HHHHHcCCCeeEEEEEecc--cccccCCEEEEC-CCHH-----HHHHHHHHHHHhhCCCCEEEEccccH---HHHHHHHH
Confidence 45555555 2232222222 335899999994 4423 26778999999999999999999884 33466777
Q ss_pred HHHHcCCEEEEEE
Q 043503 393 MLDRIGFKKLRWN 405 (430)
Q Consensus 393 ll~~~Gfk~l~~~ 405 (430)
.+++ ||+.++..
T Consensus 271 a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 271 AYKQ-GFELVEER 282 (295)
T ss_dssp HHHT-TEEEEEEE
T ss_pred HHHC-CCEEEEEE
Confidence 7877 99987654
No 35
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.38 E-value=9.2e-12 Score=122.83 Aligned_cols=135 Identities=20% Similarity=0.242 Sum_probs=91.2
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHh----cCC---eeEEEcccccCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIAS----RGL---ISMHISVSQRLPFFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~----rg~---i~~~~~d~~~lpf~d 336 (430)
++.+++.+......+|||||||.|.++.+++++ |++|+++ .+|+...+.+++ .|+ +.+...|...++
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gi--tlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--- 125 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGI--TLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--- 125 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEE--ES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEE--ECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---
Confidence 444454444344456799999999999999999 9999998 567777666654 354 888888887766
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc---------------------C--cHHHHHHH
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS---------------------Q--LNETYVPM 393 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~---------------------~--~~~~~~~l 393 (430)
.+||.|++..+++|. .......++.++.++|+|||.+++..+..... . ...++...
T Consensus 126 ~~fD~IvSi~~~Ehv-g~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~ 204 (273)
T PF02353_consen 126 GKFDRIVSIEMFEHV-GRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRA 204 (273)
T ss_dssp -S-SEEEEESEGGGT-CGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHH
T ss_pred CCCCEEEEEechhhc-ChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHH
Confidence 399999999999885 44468899999999999999998754443111 1 12346667
Q ss_pred HHHcCCEEEEEE
Q 043503 394 LDRIGFKKLRWN 405 (430)
Q Consensus 394 l~~~Gfk~l~~~ 405 (430)
+++.||++..+.
T Consensus 205 ~~~~~l~v~~~~ 216 (273)
T PF02353_consen 205 AEDAGLEVEDVE 216 (273)
T ss_dssp HHHTT-EEEEEE
T ss_pred HhcCCEEEEEEE
Confidence 888999988776
No 36
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.36 E-value=1.2e-11 Score=123.43 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=82.1
Q ss_pred HHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCc
Q 043503 268 VLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENT 338 (430)
Q Consensus 268 lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~s 338 (430)
+++.......++|||||||+|.++..++++ +.+++++| . +.+++.++++ | .+.++.+|+...++++
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D--~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~-- 215 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILN--L-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-- 215 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEe--c-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--
Confidence 333333344567899999999999999998 56788774 3 5677665543 3 3788999987666544
Q ss_pred eeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecccc
Q 043503 339 LDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF 382 (430)
Q Consensus 339 fDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~ 382 (430)
+|+|++++++++|.++ ....++++++++|+|||++++.++...
T Consensus 216 ~D~v~~~~~lh~~~~~-~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 216 ADAVLFCRILYSANEQ-LSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred CCEEEeEhhhhcCChH-HHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 6999999999776543 467899999999999999999887543
No 37
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.36 E-value=5.6e-12 Score=112.86 Aligned_cols=97 Identities=32% Similarity=0.493 Sum_probs=80.9
Q ss_pred cEEEEEcCCccHHHHHHHH-c--CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCC--CCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRE-R--NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLP--FFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~-~--g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lp--f~d~sfDlV~~~~ 346 (430)
.+|||+|||+|.++..+++ . +.+++++ |+++.|++.|+++ +. +.++++|...++ ++ +.||+|++..
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gv--D~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGV--DISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEE--ESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEE--ECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 4569999999999999994 3 6889988 7779999888763 33 899999998887 55 8999999998
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
++ ++..+ ...++.++.++|++||.+++.++.
T Consensus 82 ~l-~~~~~--~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VL-HHFPD--PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TG-GGTSH--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ch-hhccC--HHHHHHHHHHHcCCCcEEEEEECC
Confidence 88 44655 678999999999999999987755
No 38
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.36 E-value=2.5e-11 Score=115.19 Aligned_cols=98 Identities=26% Similarity=0.441 Sum_probs=80.5
Q ss_pred cEEEEEcCCccHHHHHHHHcC---CEEEEEecCCChhHHHHHHhc-------CCeeEEEcccccCCCCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRERN---VTIITTSLNLDGPFNSFIASR-------GLISMHISVSQRLPFFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g---~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~~~lpf~d~sfDlV~~~~~ 347 (430)
.+|||+|||+|.++..+++.+ .+++++ |+++.+++.++++ ..+.++.+|+..+++.+++||+|+++.+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~--D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGL--DFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEE--eCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 456999999999999998874 788888 6677887777664 2378888898888877889999999888
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
+++ .++ ...++.++.++|+|||.+++.++.
T Consensus 131 l~~-~~~--~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 131 LRN-VPD--IDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred ccc-CCC--HHHHHHHHHHhccCCcEEEEEEec
Confidence 854 555 788999999999999999886553
No 39
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.35 E-value=1.5e-11 Score=116.44 Aligned_cols=122 Identities=22% Similarity=0.357 Sum_probs=93.9
Q ss_pred cEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhcC--CeeEEEcccccCCCCCCceeEEEEccchhhcCC
Q 043503 278 RIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASRG--LISMHISVSQRLPFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~rg--~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~ 353 (430)
.+|||+|||+|.++..+++.+ .+++++ |+++.+++.++++. .+.++.+|....++++++||+|++..++ +|.+
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~--D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l-~~~~ 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIAL--DISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLAL-QWCD 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEE--eChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhh-hhcc
Confidence 467999999999999999884 566777 66788888777663 3688899999999889999999999988 5566
Q ss_pred chhHHHHHHHHHHhccCCcEEEEeeccccCcC--------------cHHHHHHHHHHcCCEEEEEE
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ--------------LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~--------------~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+ ...++.++.++|+|||.+++..+...... ..+.+..++.+. |+...+.
T Consensus 113 ~--~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 113 D--LSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred C--HHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 5 78899999999999999998765432110 123466677776 7655443
No 40
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.35 E-value=2.2e-11 Score=120.93 Aligned_cols=113 Identities=12% Similarity=0.214 Sum_probs=81.7
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||+|||+|.++..+++.|. +|+++ |+++.+++.++++ +. +.+...+. .+..+++||+|+++...
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~av--Did~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~fDlVvan~~~- 235 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGI--DIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKADVIVANILA- 235 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEE--ECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCceEEEEecCH-
Confidence 4579999999999999888864 78888 6667778777654 32 33444432 23346789999996433
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
+ .+..++.++.++|||||+++++.+.. ...+.+.+.+++. |+.++.
T Consensus 236 ~-----~l~~ll~~~~~~LkpgG~li~sgi~~---~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 236 E-----VIKELYPQFSRLVKPGGWLILSGILE---TQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred H-----HHHHHHHHHHHHcCCCcEEEEEeCcH---hHHHHHHHHHHcc-CceeeE
Confidence 2 25678999999999999999988663 2345667777766 887754
No 41
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.35 E-value=8.6e-12 Score=131.60 Aligned_cols=136 Identities=16% Similarity=0.216 Sum_probs=101.9
Q ss_pred HHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccc--cCCCCCCcee
Q 043503 267 QVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQ--RLPFFENTLD 340 (430)
Q Consensus 267 ~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~--~lpf~d~sfD 340 (430)
.++..++.....+|||+|||+|.++..+++.+.+|+++ |+++.|++.+++. ..+.++++|+. .+++++++||
T Consensus 28 ~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~gi--D~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD 105 (475)
T PLN02336 28 EILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIAL--DFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVD 105 (475)
T ss_pred HHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEE--eCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEE
Confidence 33333433333467999999999999999988889988 6778888776543 23778888875 4678889999
Q ss_pred EEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc---------C---cHHHHHHHHHHcCCEEEEEE
Q 043503 341 IVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS---------Q---LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 341 lV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~---------~---~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+|++..++++ .++.....++.++.|+|+|||++++.+...... . ....|..++.+.||......
T Consensus 106 ~I~~~~~l~~-l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 181 (475)
T PLN02336 106 LIFSNWLLMY-LSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGN 181 (475)
T ss_pred EEehhhhHHh-CCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCC
Confidence 9999998855 555457899999999999999998865432211 1 24578899999998866443
No 42
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.35 E-value=1.6e-11 Score=121.62 Aligned_cols=121 Identities=12% Similarity=0.163 Sum_probs=89.1
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHh----cCC-eeEEEcccccCCCCCCceeEEEEccchhhcCC
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIAS----RGL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~----rg~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~ 353 (430)
+|||+|||+|.++.+++++|.+|+++ |.++.+++.+++ ++. +.+...|....++ +++||+|++..++++ .+
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~V~av--D~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~-l~ 198 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFDVTAV--DINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMF-LN 198 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCEEEEE--ECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhh-CC
Confidence 45999999999999999999999998 667877766543 344 6667777766554 678999999988854 55
Q ss_pred chhHHHHHHHHHHhccCCcEEEEeeccccCc-----C-----cHHHHHHHHHHcCCEEEEEE
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-----Q-----LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-----~-----~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.+....++.++.++|+|||++++..++.... . ...++.+.+. +|+++.+.
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~--~~~i~~~~ 258 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQ--DWEIVKYN 258 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhC--CCEEEEEe
Confidence 5568899999999999999976643332111 0 1234555554 48888875
No 43
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.34 E-value=3e-11 Score=113.44 Aligned_cols=100 Identities=24% Similarity=0.392 Sum_probs=81.6
Q ss_pred ccEEEEEcCCccHHHHHHHHcC---CEEEEEecCCChhHHHHHHhcC----CeeEEEcccccCCCCCCceeEEEEccchh
Q 043503 277 IRIGLDIGGGTGTFAARMRERN---VTIITTSLNLDGPFNSFIASRG----LISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g---~~Vv~vdiD~s~~~le~a~~rg----~i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
..+|||+|||+|.++..+++.. .+++++ |+++.+++.++++. .+.++.+|+..+++++++||+|+++.+++
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~i--D~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGV--DFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEE--ECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeC
Confidence 3467999999999999999883 478887 66678877777653 37888899888888788999999988884
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
+ .++ ...++.++.++|+|||++++.++..
T Consensus 118 ~-~~~--~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 118 N-VTD--IQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred C-ccc--HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 4 555 7889999999999999999876543
No 44
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.31 E-value=1.5e-11 Score=120.67 Aligned_cols=98 Identities=18% Similarity=0.179 Sum_probs=78.7
Q ss_pred cEEEEEcCCccH----HHHHHHHc-------CCEEEEEecCCChhHHHHHHhc---------------------------
Q 043503 278 RIGLDIGGGTGT----FAARMRER-------NVTIITTSLNLDGPFNSFIASR--------------------------- 319 (430)
Q Consensus 278 r~VLDIGcGtG~----~a~~La~~-------g~~Vv~vdiD~s~~~le~a~~r--------------------------- 319 (430)
-+|+|+|||||. ++..+++. +.+|+++ |+++.|++.|++.
T Consensus 101 ~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~--Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 101 VRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILAT--DIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred EEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEE--ECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 467999999995 56666654 3678888 7778999888763
Q ss_pred ------CCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 320 ------GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 320 ------g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
..+.|.+.|+...++++++||+|+|.+++++ .++.....++.+++++|+|||++++.+
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~y-f~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIY-FDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHh-CCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1367888888887777889999999999965 454457889999999999999999853
No 45
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.30 E-value=4.4e-11 Score=118.15 Aligned_cols=140 Identities=26% Similarity=0.277 Sum_probs=100.1
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHH-HH-HHhc--CC---eeEEEcccccCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFN-SF-IASR--GL---ISMHISVSQRLPFFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~l-e~-a~~r--g~---i~~~~~d~~~lpf~d 336 (430)
.+.+...+++-+.++|||||||+|.+..+|+.+|+ .|+|+ |++.... ++ +.++ |. +.......+.+|. .
T Consensus 104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGi--DP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~ 180 (315)
T PF08003_consen 104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGI--DPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L 180 (315)
T ss_pred HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEE--CCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c
Confidence 44555555555557789999999999999999987 57888 5554332 21 1111 22 2222246788886 7
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC--------------------cHHHHHHHHHH
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ--------------------LNETYVPMLDR 396 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~--------------------~~~~~~~ll~~ 396 (430)
++||+|+|+.++.|. .+ ....|.++...|+|||.+++.+.+..+.. -...+...+++
T Consensus 181 ~~FDtVF~MGVLYHr-r~--Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r 257 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHR-RS--PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLER 257 (315)
T ss_pred CCcCEEEEeeehhcc-CC--HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHH
Confidence 899999999999874 34 67899999999999999999877754433 12457889999
Q ss_pred cCCEEEEEEecccc
Q 043503 397 IGFKKLRWNVGMKL 410 (430)
Q Consensus 397 ~Gfk~l~~~~~~k~ 410 (430)
+||+.++..-...+
T Consensus 258 ~gF~~v~~v~~~~T 271 (315)
T PF08003_consen 258 AGFKDVRCVDVSPT 271 (315)
T ss_pred cCCceEEEecCccC
Confidence 99999987644443
No 46
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.29 E-value=2.6e-11 Score=113.55 Aligned_cols=108 Identities=17% Similarity=0.295 Sum_probs=78.4
Q ss_pred HHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHH----HHHhcCC-eeEEEcccccCCCCCCceeE
Q 043503 267 QVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNS----FIASRGL-ISMHISVSQRLPFFENTLDI 341 (430)
Q Consensus 267 ~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le----~a~~rg~-i~~~~~d~~~lpf~d~sfDl 341 (430)
+.....+.+ ++||+|||.|+.+.+|+++|..|+++ |.++..++ .|.++++ +...+.|.....++ +.||+
T Consensus 24 ~a~~~~~~g---~~LDlgcG~GRNalyLA~~G~~VtAv--D~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~ 97 (192)
T PF03848_consen 24 EAVPLLKPG---KALDLGCGEGRNALYLASQGFDVTAV--DISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDF 97 (192)
T ss_dssp HHCTTS-SS---EEEEES-TTSHHHHHHHHTT-EEEEE--ESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEE
T ss_pred HHHhhcCCC---cEEEcCCCCcHHHHHHHHCCCeEEEE--ECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCE
Confidence 334444444 45999999999999999999999999 55565443 3444565 78888898887764 68999
Q ss_pred EEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
|++..++. +.+.+....++..|...++|||++++..|+.
T Consensus 98 I~st~v~~-fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~ 136 (192)
T PF03848_consen 98 IVSTVVFM-FLQRELRPQIIENMKAATKPGGYNLIVTFME 136 (192)
T ss_dssp EEEESSGG-GS-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred EEEEEEec-cCCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence 99987774 4655578899999999999999999866653
No 47
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.29 E-value=2.2e-11 Score=114.76 Aligned_cols=120 Identities=21% Similarity=0.215 Sum_probs=91.2
Q ss_pred ccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C--CeeEEEccc-ccCC--CCCCceeEEEEc
Q 043503 277 IRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G--LISMHISVS-QRLP--FFENTLDIVHSM 345 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~-~~lp--f~d~sfDlV~~~ 345 (430)
..+|||+|||+|.++..+++. +.+|+++ |+++.+++.++++ + .+.++++|+ +.++ +++++||+|++.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gV--D~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGI--EVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEE--EechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 356799999999999999887 5678888 6678888777643 3 378899998 7776 778899999996
Q ss_pred cchhhcCCc------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEE
Q 043503 346 HVLSNWIPD------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 346 ~~L~~~~~d------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
... .|... .....++.++.++|+|||.|++.. ........+.+.+++.|++..
T Consensus 119 ~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~---~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 119 FPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT---DWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc---CCHHHHHHHHHHHHhCccccc
Confidence 544 33221 014678999999999999999863 334455677888888998755
No 48
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.28 E-value=1.2e-10 Score=107.11 Aligned_cols=121 Identities=18% Similarity=0.178 Sum_probs=89.6
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCCCceeEEEEccchhhcC
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
++|||+|||+|.++..+++++.+|+++ |+++.+++.++++ +. +.++.+|....+ .++||+|+++..+.+..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTT--DINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLE 96 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEE--ECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCc
Confidence 346999999999999999997788888 6678887776654 32 677777875543 45899999987664322
Q ss_pred Cc------------------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 353 PD------------------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 353 ~d------------------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
++ .....++.++.|+|+|||.+++.+.... ....+.+.+++.||......
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~---~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN---GEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC---ChHHHHHHHHhCCCeEEEEE
Confidence 11 0146789999999999999998764422 23567788999999877654
No 49
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2.1e-11 Score=120.86 Aligned_cols=118 Identities=20% Similarity=0.285 Sum_probs=84.4
Q ss_pred ccEEEEEcCCccHHHHHHHHcCCE-EEEEecCCChhHHHHHH----hcCCee-EEEcccccCCCCC-CceeEEEEccchh
Q 043503 277 IRIGLDIGGGTGTFAARMRERNVT-IITTSLNLDGPFNSFIA----SRGLIS-MHISVSQRLPFFE-NTLDIVHSMHVLS 349 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~~-Vv~vdiD~s~~~le~a~----~rg~i~-~~~~d~~~lpf~d-~sfDlV~~~~~L~ 349 (430)
.++|||+|||+|.+++.+++.|+. |+++|+| +..++.++ .++... ...........+. +.||+|++ +.+.
T Consensus 163 g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiD--p~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVA-NILA 239 (300)
T COG2264 163 GKTVLDVGCGSGILAIAAAKLGAKKVVGVDID--PQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVA-NILA 239 (300)
T ss_pred CCEEEEecCChhHHHHHHHHcCCceEEEecCC--HHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEe-hhhH
Confidence 356799999999999999999875 9999666 44444444 445432 1111122222333 59999999 4553
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+ -+..+..++.+.|||||+++++..+. +..+.+.+.+.+.||++++..
T Consensus 240 ~-----vl~~La~~~~~~lkpgg~lIlSGIl~---~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 240 E-----VLVELAPDIKRLLKPGGRLILSGILE---DQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred H-----HHHHHHHHHHHHcCCCceEEEEeehH---hHHHHHHHHHHhCCCeEeEEE
Confidence 3 26789999999999999999999773 234668888999999988754
No 50
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.27 E-value=9.6e-11 Score=120.87 Aligned_cols=97 Identities=21% Similarity=0.323 Sum_probs=79.2
Q ss_pred cEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcC--C-eeEEEcccccCCCCCCceeEEEEccchhhcCC
Q 043503 278 RIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRG--L-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg--~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~ 353 (430)
.+|||||||+|.++..+++. +++|+++ |+++.+++.++++. . +.+...|...+ +++||+|++..+++| +.
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~~V~gi--DlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~eh-vg 242 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGVSVVGV--TISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEH-VG 242 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhh-CC
Confidence 45699999999999999986 8899988 77899998888763 2 66677776654 478999999888865 54
Q ss_pred chhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
......++.++.++|||||++++..+.
T Consensus 243 ~~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 243 PKNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred hHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 445788999999999999999986654
No 51
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.27 E-value=7.6e-12 Score=120.63 Aligned_cols=95 Identities=18% Similarity=0.266 Sum_probs=77.7
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc--------CC----eeEEEcccccCCCCCCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR--------GL----ISMHISVSQRLPFFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r--------g~----i~~~~~d~~~lpf~d~sfDlV~~~ 345 (430)
+.|||+|||+|.++..|++.|++|+|+ |+++.|++.|+++ +. +.+.+.+.+.+. +.||+|+|+
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~GI--D~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTGI--DASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEee--cccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 447999999999999999999999998 8889999988876 21 334445555543 459999999
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
.+++| +.+ +..++..+.+.|+|||.+++++.-
T Consensus 166 evleH-V~d--p~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 166 EVLEH-VKD--PQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHH-HhC--HHHHHHHHHHHhCCCCceEeeehh
Confidence 99988 555 789999999999999999986543
No 52
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.26 E-value=9.2e-11 Score=109.59 Aligned_cols=114 Identities=20% Similarity=0.223 Sum_probs=87.8
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||+|||+|.++..++.+ +.+|+++ |.++.|++.++++ +. +.++.+|...++. +++||+|++.. .
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~~~~V~gi--D~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-~- 121 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARPELKVTLV--DSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-V- 121 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCCCCeEEEE--eCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc-c-
Confidence 45699999999999998864 6889988 6677777666543 43 8889999888776 77999999953 2
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.+ +..++.++.++|||||++++..+. .....+..+.+..|+.+.+..
T Consensus 122 ---~~--~~~~l~~~~~~LkpGG~lv~~~~~----~~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 122 ---AS--LSDLVELCLPLLKPGGRFLALKGR----DPEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ---cC--HHHHHHHHHHhcCCCeEEEEEeCC----ChHHHHHHHHHhcCceEeeeE
Confidence 22 678999999999999999986432 334557777788898866543
No 53
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.25 E-value=6.8e-11 Score=111.81 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=81.7
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-CCeeEEEcccccCCCCCCceeEEEEccchhhcCCc
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d 354 (430)
..|||+|||+|.++..+++. +.+++++ |+++.|++.|+++ ..+.+..+++.. |+++++||+|++..+++|+ +.
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~gi--DiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl-~p 120 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGV--EINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHI-NP 120 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEE--ECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhC-CH
Confidence 34699999999999999887 6888888 7789999999875 336788888877 8889999999999999775 44
Q ss_pred hhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 355 SMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
+.+..++.++.|++ ++++++.+++.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 46889999999998 57888887654
No 54
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.25 E-value=2e-12 Score=107.07 Aligned_cols=89 Identities=30% Similarity=0.463 Sum_probs=55.6
Q ss_pred EEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCC-C-CCCceeEEEEccchhh
Q 043503 281 LDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLP-F-FENTLDIVHSMHVLSN 350 (430)
Q Consensus 281 LDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lp-f-~d~sfDlV~~~~~L~~ 350 (430)
||+|||+|.++..++++ +.+++++ |+|+.|++.++++ +. ......+..... . ..++||+|++..+++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~--D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGV--DISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEE--ESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999999998 7888888 6677777555544 22 223333222221 1 2359999999999965
Q ss_pred cCCchhHHHHHHHHHHhccCCcEE
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIF 374 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~l 374 (430)
+++ +..++..+.++|+|||+|
T Consensus 79 -l~~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 -LED--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S---HHHHHHHHTTT-TSS-EE
T ss_pred -hhh--HHHHHHHHHHHcCCCCCC
Confidence 555 889999999999999986
No 55
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.25 E-value=8.8e-11 Score=111.85 Aligned_cols=124 Identities=14% Similarity=0.015 Sum_probs=90.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHh-cC-----------------CeeEEEcccccCCCC-CCc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIAS-RG-----------------LISMHISVSQRLPFF-ENT 338 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~-rg-----------------~i~~~~~d~~~lpf~-d~s 338 (430)
.+|||+|||.|..+..|+++|.+|+++ |+|+.+++.+.+ ++ .+.++++|+..++.. .++
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gv--D~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGV--ELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEE--eCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 356999999999999999999999999 777877776432 22 277889998777642 457
Q ss_pred eeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC-----cC---cHHHHHHHHHHcCCEEEEEE
Q 043503 339 LDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG-----SQ---LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 339 fDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~-----~~---~~~~~~~ll~~~Gfk~l~~~ 405 (430)
||.|+...++.| ++.+....++..+.++|||||++++..|.... +. ...++.+.+. .+|.+....
T Consensus 114 fD~i~D~~~~~~-l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~-~~~~i~~~~ 186 (213)
T TIGR03840 114 VDAVYDRAALIA-LPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYG-GHYEIELLE 186 (213)
T ss_pred cCEEEechhhcc-CCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhc-CCceEEEEe
Confidence 999999887765 56656888999999999999987766554311 11 2245665554 246655544
No 56
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.24 E-value=9.8e-11 Score=108.73 Aligned_cols=113 Identities=19% Similarity=0.312 Sum_probs=81.9
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHh----cCC--eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIAS----RGL--ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~----rg~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||+|||+|.++..++.. +.+|+++ |.++.|++.+++ .+. +.++.+|++.++ .+++||+|++.. +.
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~~~V~~i--D~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPELKLTLL--ESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA 119 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCCCeEEEE--eCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh
Confidence 45699999999999998866 4678888 666777665543 343 788999988864 467999999954 32
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHH---cCCEEEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDR---IGFKKLRW 404 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~---~Gfk~l~~ 404 (430)
+ ...++..+.++|+|||.+++.+ +......+..+.++ .||..++.
T Consensus 120 ----~--~~~~~~~~~~~LkpgG~lvi~~----~~~~~~~~~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 120 ----S--LNVLLELTLNLLKVGGYFLAYK----GKKYLDEIEEAKRKCQVLGVEPLEV 167 (181)
T ss_pred ----C--HHHHHHHHHHhcCCCCEEEEEc----CCCcHHHHHHHHHhhhhcCceEeec
Confidence 2 5668889999999999999853 23333444444444 89987764
No 57
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.24 E-value=1.3e-10 Score=114.28 Aligned_cols=122 Identities=22% Similarity=0.326 Sum_probs=93.0
Q ss_pred cEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHh----cCC---eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIAS----RGL---ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~----rg~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||||||-|.++++++++ |++|+|+ ++|+++.+.+++ +|. +.+...|.+.+. +.||-|++...++
T Consensus 74 ~~lLDiGCGWG~l~~~aA~~y~v~V~Gv--TlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfE 148 (283)
T COG2230 74 MTLLDIGCGWGGLAIYAAEEYGVTVVGV--TLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFE 148 (283)
T ss_pred CEEEEeCCChhHHHHHHHHHcCCEEEEe--eCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHH
Confidence 44599999999999999999 9999999 667777766655 355 666666666554 5599999999998
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc-----------------Cc--HHHHHHHHHHcCCEEEEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-----------------QL--NETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-----------------~~--~~~~~~ll~~~Gfk~l~~~ 405 (430)
|+..+ ....++..++++|+|||.+++-.+..... .+ ...+.+...+.||.+..+.
T Consensus 149 hvg~~-~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~ 222 (283)
T COG2230 149 HVGKE-NYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVE 222 (283)
T ss_pred HhCcc-cHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHh
Confidence 85543 68999999999999999998754443221 11 2456667888999888765
No 58
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.23 E-value=3.7e-11 Score=112.22 Aligned_cols=97 Identities=21% Similarity=0.304 Sum_probs=78.8
Q ss_pred EEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----C--Cee-EEEcccccCC-CCCCceeEEEEccchhh
Q 043503 280 GLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----G--LIS-MHISVSQRLP-FFENTLDIVHSMHVLSN 350 (430)
Q Consensus 280 VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g--~i~-~~~~d~~~lp-f~d~sfDlV~~~~~L~~ 350 (430)
||++|||||..-.+.-.. +.+|+.+ |+++.|.+.+.++ . .+. |++++.+++| ++|++||.|+|..++-.
T Consensus 80 vLEvgcGtG~Nfkfy~~~p~~svt~l--Dpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS 157 (252)
T KOG4300|consen 80 VLEVGCGTGANFKFYPWKPINSVTCL--DPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS 157 (252)
T ss_pred eEEecccCCCCcccccCCCCceEEEe--CCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec
Confidence 499999999877766544 8888887 7889988776543 1 144 8899999999 89999999999999954
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
..+ ..+.|.++.|+|||||.+++.+...
T Consensus 158 -ve~--~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 158 -VED--PVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred -cCC--HHHHHHHHHHhcCCCcEEEEEeccc
Confidence 333 7899999999999999998866553
No 59
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.23 E-value=1.6e-10 Score=109.59 Aligned_cols=124 Identities=21% Similarity=0.247 Sum_probs=94.8
Q ss_pred ccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccchh
Q 043503 277 IRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
..+|||+|||+|.++..+++.+.+|+++ |+++.|++.|+++ + .+.+.++|+..++ ++||+|++..++.
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~~v~gv--D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~ 130 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGAIVKAV--DISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLI 130 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCCEEEEE--ECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHH
Confidence 4567999999999999999998899988 6678888877664 2 4788888887765 7899999998886
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeecc-------------ccCc-------CcHHHHHHHHHHcCCEEEEEEe
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF-------------CFGS-------QLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~-------------~~~~-------~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
++ +...+..++.++.+++++|+++.+.... .... ...+++.++++++||+++....
T Consensus 131 ~~-~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 206 (219)
T TIGR02021 131 HY-PASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGL 206 (219)
T ss_pred hC-CHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeec
Confidence 64 4445788999999999988777653211 0000 0235688899999999887653
No 60
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.23 E-value=5.8e-11 Score=111.67 Aligned_cols=107 Identities=22% Similarity=0.319 Sum_probs=93.7
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcCC-eeEEEcccccCCCCCCceeE
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGL-ISMHISVSQRLPFFENTLDI 341 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~-i~~~~~d~~~lpf~d~sfDl 341 (430)
..+++..++....+.|.|+|||+|..+..|+++ +..++|+ |.|+.|++.|+++.. ..|..+|+..+. ++..+|+
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~Gi--DsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dl 95 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGI--DSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDL 95 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeec--cCCHHHHHHHHHhCCCCceecccHhhcC-CCCccch
Confidence 345666678788888999999999999999999 7888887 889999999998866 889999998876 6778999
Q ss_pred EEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
++++-++ ||.++ -..+|..+...|.|||.+.+-
T Consensus 96 lfaNAvl-qWlpd--H~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 96 LFANAVL-QWLPD--HPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred hhhhhhh-hhccc--cHHHHHHHHHhhCCCceEEEE
Confidence 9998888 99998 678999999999999999774
No 61
>PRK04266 fibrillarin; Provisional
Probab=99.23 E-value=2.9e-10 Score=109.25 Aligned_cols=122 Identities=14% Similarity=0.122 Sum_probs=84.8
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHH----HHHhcCCeeEEEcccccC----CCCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNS----FIASRGLISMHISVSQRL----PFFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le----~a~~rg~i~~~~~d~~~l----pf~d~sfDlV~~~~~ 347 (430)
.+|||+|||+|.++..+++. +.+|+++ |.++.|++ .++++..+.++.+|.... ++ ..+||+|++...
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~~g~V~av--D~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d~~ 150 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVEEGVVYAV--EFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIYQDVA 150 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcCCCeEEEE--ECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEEECCC
Confidence 45699999999999999987 3588888 66777765 334444577788887541 22 356999997322
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEE------eeccccCcCcHHHHHHHHHHcCCEEEEEEec
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWL------DRFFCFGSQLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl------~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
. ++ ....++.++.|+|||||.+++ .++-.......+...+.++++||+.+++..-
T Consensus 151 ~----p~-~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 151 Q----PN-QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred C----hh-HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence 1 11 134578999999999999999 3333222223344568899999999987643
No 62
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.23 E-value=5.9e-11 Score=116.63 Aligned_cols=90 Identities=23% Similarity=0.435 Sum_probs=73.7
Q ss_pred cEEEEEcCCccHHHHHHHHc-----CCEEEEEecCCChhHHHHHHhc-CCeeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRER-----NVTIITTSLNLDGPFNSFIASR-GLISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-----g~~Vv~vdiD~s~~~le~a~~r-g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+|||+|||+|.++..+++. +.+++++ |+++.+++.|+++ ..+.+.++|+..+|+++++||+|++...
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~gi--D~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGL--DISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEE--CCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 45799999999999998875 2367777 8889999998876 3478899999999999999999998532
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
+. .+.++.|+|||||+|++..+
T Consensus 161 -~~-----~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 161 -PC-----KAEELARVVKPGGIVITVTP 182 (272)
T ss_pred -CC-----CHHHHHhhccCCCEEEEEeC
Confidence 22 35799999999999998643
No 63
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.23 E-value=5e-11 Score=112.31 Aligned_cols=125 Identities=22% Similarity=0.294 Sum_probs=99.1
Q ss_pred CCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCC-eeEEEccc-ccCCCCCCceeEEEEccchh
Q 043503 272 KPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGL-ISMHISVS-QRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 272 ~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~-i~~~~~d~-~~lpf~d~sfDlV~~~~~L~ 349 (430)
+|+...+-+||||||+|.-+..+.+.|..++|+ |+|+.|++.|.++.. -.++.+|+ +.+||.+++||-|++...+
T Consensus 46 lp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGv--DiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv- 122 (270)
T KOG1541|consen 46 LPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGV--DISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV- 122 (270)
T ss_pred CCCCCCcEEEEeccCCCcchheeccCCceEEee--cCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee-
Confidence 454456778999999999999999999988888 889999999987543 24566654 8899999999999996665
Q ss_pred hcC---------CchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCE
Q 043503 350 NWI---------PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFK 400 (430)
Q Consensus 350 ~~~---------~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk 400 (430)
+|. |...+..++..++.+|++|+..++ .|+...+...+.+.....++||.
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~-QfYpen~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL-QFYPENEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEE-EecccchHHHHHHHHHHHhhccC
Confidence 553 344567788889999999999998 45655555567777888889986
No 64
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.22 E-value=2.5e-10 Score=105.82 Aligned_cols=115 Identities=16% Similarity=0.192 Sum_probs=84.0
Q ss_pred ccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 277 IRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
..+|||+|||+|.++..++++ +.+|+++ |+++.+++.++++ + .+.++.++.. .++ .++||+|++....
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~v--D~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~~ 107 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAI--ERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGSG 107 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCCc
Confidence 345799999999999999887 4688888 6667777666543 3 3677777763 233 3679999996543
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEE
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
. .+..++..+.++|+|||++++..... .....+..++++.||+.+..
T Consensus 108 ~------~~~~~l~~~~~~Lk~gG~lv~~~~~~---~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 108 G------NLTAIIDWSLAHLHPGGRLVLTFILL---ENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred c------CHHHHHHHHHHhcCCCeEEEEEEecH---hhHHHHHHHHHHCCCCcceE
Confidence 2 25678999999999999998865332 22356778899999975543
No 65
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.21 E-value=2.2e-10 Score=106.94 Aligned_cols=135 Identities=19% Similarity=0.234 Sum_probs=94.5
Q ss_pred EEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEccccc-C-CCCCCceeEEEEccchhhcCCch
Q 043503 279 IGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQR-L-PFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~-l-pf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
+|||+|||+|.++..+++. +.+++++ |+++.+++.+++++ +.++.+|+.. + ++++++||+|+++.+++| +++
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~~~~gi--D~s~~~i~~a~~~~-~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~-~~d- 90 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQVRGYGI--EIDQDGVLACVARG-VNVIQGDLDEGLEAFPDKSFDYVILSQTLQA-TRN- 90 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCCcEEEE--eCCHHHHHHHHHcC-CeEEEEEhhhcccccCCCCcCEEEEhhHhHc-CcC-
Confidence 4699999999999999876 6677777 77888888887765 4777888754 4 367889999999999954 666
Q ss_pred hHHHHHHHHHHhccCCcEEEEeec--------------cc---------cC-----cCcHHHHHHHHHHcCCEEEEEEec
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRF--------------FC---------FG-----SQLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f--------------~~---------~~-----~~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
...+++++.|+++++.. .+..+ .. .+ ....+++.+++++.||+++....-
T Consensus 91 -~~~~l~e~~r~~~~~ii-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 91 -PEEILDEMLRVGRHAIV-SFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred -HHHHHHHHHHhCCeEEE-EcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 77899999988775421 11000 00 00 012467889999999999987755
Q ss_pred ccccCCCchhHHH
Q 043503 408 MKLDRGVKKNEWY 420 (430)
Q Consensus 408 ~k~~~g~~~~~~~ 420 (430)
.....|+..-.||
T Consensus 169 ~~~~~~~~~~~~~ 181 (194)
T TIGR02081 169 DVDGRGGREVRWF 181 (194)
T ss_pred ccccccccccccC
Confidence 5544444433333
No 66
>PRK06922 hypothetical protein; Provisional
Probab=99.20 E-value=1.1e-10 Score=125.78 Aligned_cols=101 Identities=17% Similarity=0.303 Sum_probs=82.1
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C-CeeEEEcccccCC--CCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G-LISMHISVSQRLP--FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g-~i~~~~~d~~~lp--f~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.++..++++ +.+++++ |+++.|++.++++ + .+.++++|...+| +++++||+|+++.++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~kVtGI--DIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDKRIYGI--DISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 35699999999999988876 6789988 7788999888764 2 2577888988887 788999999999888
Q ss_pred hhcC---C-------chhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 349 SNWI---P-------DSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 349 ~~~~---~-------d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
++|. + ......++.++.|+|||||.+++.+..
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 6542 1 235788999999999999999997643
No 67
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.18 E-value=2.4e-10 Score=117.43 Aligned_cols=122 Identities=11% Similarity=0.067 Sum_probs=89.8
Q ss_pred eeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C-----Ce
Q 043503 254 WLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G-----LI 322 (430)
Q Consensus 254 ~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g-----~i 322 (430)
-+|....++...+.+++.++.....+|||+|||+|.++..++++ +.+|+++ |.++.+++.++++ + .+
T Consensus 206 gVFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~v--D~S~~Av~~A~~N~~~n~~~~~~~v 283 (378)
T PRK15001 206 NVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFV--DESPMAVASSRLNVETNMPEALDRC 283 (378)
T ss_pred CccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcCcccCceE
Confidence 35666667776677777776544456799999999999999988 5788988 6677888777653 2 35
Q ss_pred eEEEcccccCCCCCCceeEEEEccchhhc--CCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 323 SMHISVSQRLPFFENTLDIVHSMHVLSNW--IPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 323 ~~~~~d~~~lpf~d~sfDlV~~~~~L~~~--~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.++..|.... +++.+||+|+|+..++.. +.+.....++.++.++|+|||.|++..
T Consensus 284 ~~~~~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 284 EFMINNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EEEEcccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 7777775331 245689999998776421 233346789999999999999999974
No 68
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.17 E-value=6.9e-10 Score=105.98 Aligned_cols=123 Identities=19% Similarity=0.326 Sum_probs=92.7
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCC-CCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLP-FFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lp-f~d~sfDlV~~~~~L~~~ 351 (430)
..|||||||+|.++..+++.+.+++++ |+++.+++.+.++ +. +.+...+...++ ..+++||+|++..++++
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~~~v~~i--D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~- 126 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLGADVTGI--DASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH- 126 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcCCeEEEE--cCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc-
Confidence 356999999999999999988898888 6667777766654 33 567777766654 34679999999988865
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeecccc--------------------CcC------cHHHHHHHHHHcCCEEEEEE
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF--------------------GSQ------LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~--------------------~~~------~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.++ ...++..+.++|+|||.+++..+... ... ..+++..++.+.||+.+...
T Consensus 127 ~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 127 VPD--PASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred cCC--HHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 555 67899999999999999998753110 000 22468889999999988653
No 69
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.16 E-value=5e-10 Score=95.29 Aligned_cols=92 Identities=24% Similarity=0.235 Sum_probs=70.2
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C--CeeEEEccccc-CCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQR-LPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~-lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.++..++++ +.+|+++ |+++.+.+.++++ + .+.++.++... ++...++||+|++....
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAI--ERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG 98 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEE--cCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence 46799999999999999987 4688888 6778877776543 3 36777777654 33334689999996543
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
. ....++.++.+.|+|||+|++.
T Consensus 99 ~------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 99 G------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred h------hHHHHHHHHHHHcCCCCEEEEE
Confidence 2 2568999999999999999985
No 70
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.15 E-value=2.1e-10 Score=107.29 Aligned_cols=120 Identities=18% Similarity=0.298 Sum_probs=85.6
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCC---CCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLP---FFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lp---f~d~sfDlV~~~~ 346 (430)
.++||||||+|.++..++++ +..++++ |++..+++.+.++ + .+.++.+|+..++ ++++++|.|+++.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gv--D~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGI--EIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEE--EeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 45799999999999999988 5688888 6677887776543 3 4888999987654 4567999999965
Q ss_pred chhhcCCch------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcC-CEEEE
Q 043503 347 VLSNWIPDS------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIG-FKKLR 403 (430)
Q Consensus 347 ~L~~~~~d~------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~G-fk~l~ 403 (430)
.. .|.... ....++.++.|+|||||.|++.+. .....+.+.+.+.+.+ |..+.
T Consensus 96 pd-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td---~~~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 96 PD-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD---NEPLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred CC-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC---CHHHHHHHHHHHHhCCCeEecc
Confidence 43 443221 125689999999999999988642 2233444556666665 77654
No 71
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.15 E-value=7.5e-10 Score=104.78 Aligned_cols=123 Identities=20% Similarity=0.303 Sum_probs=93.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCC-CCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFF-ENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~-d~sfDlV~~~~~L~~ 350 (430)
.+|||+|||+|.++..+++.+.+++++ |.++.+++.++++ +. +.+...++..++.. +++||+|++..++++
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~~v~~i--D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGANVTGI--DASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCCeEEEE--eCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 456999999999999999888888888 6677777766553 33 77778887776644 478999999988855
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeecccc--------------------CcC------cHHHHHHHHHHcCCEEEEE
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF--------------------GSQ------LNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~--------------------~~~------~~~~~~~ll~~~Gfk~l~~ 404 (430)
..+ ...++.++.++|+|||.+++...... ... ...++.+++++.||.++..
T Consensus 125 -~~~--~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~ 201 (224)
T TIGR01983 125 -VPD--PQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDV 201 (224)
T ss_pred -CCC--HHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeee
Confidence 555 67899999999999999988653110 000 1245888999999998765
Q ss_pred E
Q 043503 405 N 405 (430)
Q Consensus 405 ~ 405 (430)
.
T Consensus 202 ~ 202 (224)
T TIGR01983 202 K 202 (224)
T ss_pred e
Confidence 4
No 72
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.14 E-value=1.1e-09 Score=104.69 Aligned_cols=126 Identities=15% Similarity=0.017 Sum_probs=89.8
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHH-hcC-----------------CeeEEEcccccCCCC-CCc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIA-SRG-----------------LISMHISVSQRLPFF-ENT 338 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~-~rg-----------------~i~~~~~d~~~lpf~-d~s 338 (430)
.+|||+|||.|..+..|+++|.+|+++ |+++..++.+. +++ .+.++++|+..++.. ...
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~av--D~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGV--ELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEE--ccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 356999999999999999999999999 77777776543 332 267788888777533 258
Q ss_pred eeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEE-eeccccCc----C---cHHHHHHHHHHcCCEEEEEEec
Q 043503 339 LDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL-DRFFCFGS----Q---LNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 339 fDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl-~~f~~~~~----~---~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
||+|+...++.+ ++.+....++..+.++|+|||.+++ +..+.... . ..+++.+.+.. +|.+......
T Consensus 117 fd~v~D~~~~~~-l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~-~~~i~~~~~~ 191 (218)
T PRK13255 117 VDAVYDRAALIA-LPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAG-CFEIELLERQ 191 (218)
T ss_pred eeEEEehHhHhh-CCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcC-CceEEEeeec
Confidence 999999888855 5666789999999999999997444 43332111 1 23456666642 3666655533
No 73
>PRK06202 hypothetical protein; Provisional
Probab=99.14 E-value=2.6e-10 Score=109.20 Aligned_cols=97 Identities=23% Similarity=0.252 Sum_probs=75.4
Q ss_pred ccEEEEEcCCccHHHHHHHHc----C--CEEEEEecCCChhHHHHHHhcC---CeeEEEcccccCCCCCCceeEEEEccc
Q 043503 277 IRIGLDIGGGTGTFAARMRER----N--VTIITTSLNLDGPFNSFIASRG---LISMHISVSQRLPFFENTLDIVHSMHV 347 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~----g--~~Vv~vdiD~s~~~le~a~~rg---~i~~~~~d~~~lpf~d~sfDlV~~~~~ 347 (430)
..+|||+|||+|.++..+++. | .+|+++ |+++.|++.++++. .+.+.+.+...+++++++||+|+|+.+
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gv--D~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAI--DPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEE--cCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 346799999999998888752 3 488887 88899999988762 256777777777777889999999999
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
++| .++.....++.++.|+++ |.+++.+
T Consensus 139 lhh-~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 139 LHH-LDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred eec-CChHHHHHHHHHHHHhcC--eeEEEec
Confidence 965 555456789999999998 4444443
No 74
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.13 E-value=4.6e-10 Score=102.88 Aligned_cols=98 Identities=18% Similarity=0.249 Sum_probs=70.0
Q ss_pred cEEEEEcCCccHHHHHHHHcCC--EEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRERNV--TIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~--~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.++||+|||+|.++..+++++. +|+++ |+++.+++.++++ +. +.++..|... +.++++||+|+++..++
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~~~~~v~~v--Di~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRGPDAKVTAV--DINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTSTCEEEEEE--ESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SB
T ss_pred CeEEEecCChHHHHHHHHHhCCCCEEEEE--cCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchh
Confidence 4569999999999999999843 58887 5567777666543 33 6777777643 23478999999987663
Q ss_pred hcCC--chhHHHHHHHHHHhccCCcEEEEee
Q 043503 350 NWIP--DSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 350 ~~~~--d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.-.. ......++.+..+.|+|||.+++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 2111 1246789999999999999998743
No 75
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.13 E-value=9.3e-10 Score=110.71 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=85.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcC-----------CeeEEEcccccCCCCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRG-----------LISMHISVSQRLPFFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg-----------~i~~~~~d~~~lpf~d~sfDlV~~~~ 346 (430)
.+|||+|||+|.++..++++|.+|+++ |+++.|++.++++. .+.+...|.+.+ +++||+|+|..
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~~V~gv--D~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~ 220 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGAIVSAS--DISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLD 220 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCCEEEEE--ECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcC
Confidence 457999999999999999999999988 77899998887651 146667776543 57899999999
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeecc-------------ccCcC--------cHHHHHHHHHHcCCEEEEEE
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF-------------CFGSQ--------LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~-------------~~~~~--------~~~~~~~ll~~~Gfk~l~~~ 405 (430)
++.|+ ++.....++..+.+ +.+||.++..... ..+.. ..+++.++++++||++....
T Consensus 221 vL~H~-p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 221 VLIHY-PQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred EEEec-CHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 98764 44345566777765 4566654421100 00100 14678899999999987533
No 76
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.12 E-value=7.4e-10 Score=111.92 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=87.7
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+|||+|||+|+++..++..+.+++++ |+++.|++.++++ |. +.+..+|+.++|+++++||+|+++......
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~~~v~g~--Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~ 261 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMGAKVIGC--DIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRS 261 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhCCeEEEE--cCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCc
Confidence 357999999999999988889999998 6667777665543 43 678889999999888999999996433210
Q ss_pred --C----CchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 352 --I----PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 352 --~----~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
. .......++.++.|+|+|||++++...- . ..+.+.++.+|| ++.
T Consensus 262 ~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~--~----~~~~~~~~~~g~-i~~ 312 (329)
T TIGR01177 262 TTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT--R----IDLESLAEDAFR-VVK 312 (329)
T ss_pred ccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC--C----CCHHHHHhhcCc-chh
Confidence 1 1123578999999999999999875321 1 246677899999 554
No 77
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.12 E-value=5.9e-11 Score=112.43 Aligned_cols=136 Identities=18% Similarity=0.285 Sum_probs=103.9
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCC-eeEEEcccccCC--CCCCceeE
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGL-ISMHISVSQRLP--FFENTLDI 341 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~-i~~~~~d~~~lp--f~d~sfDl 341 (430)
+.+++.....+..+++||+|||||-.+..+..+-....|+ |+|++|++.|.++|. -.+.+.++..+- ..+..||+
T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGv--DiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGV--DISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred HHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCC--chhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccc
Confidence 5556655666668899999999999999999887777877 889999999999988 344555554332 45678999
Q ss_pred EEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC-----------cH-HHHHHHHHHcCCEEEEEE
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-----------LN-ETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-----------~~-~~~~~ll~~~Gfk~l~~~ 405 (430)
|.+..++. ++.. ++.++.-+...|+|||.|.++.--..+.. .. .-+..+++..||.++...
T Consensus 192 i~AaDVl~-YlG~--Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 192 IVAADVLP-YLGA--LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred hhhhhHHH-hhcc--hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence 99999994 4655 89999999999999999998743221111 11 225668899999999876
No 78
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.11 E-value=7.3e-10 Score=107.28 Aligned_cols=141 Identities=16% Similarity=0.234 Sum_probs=103.4
Q ss_pred CchhHHHHHHH--ccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-------CCeeEEEc
Q 043503 259 GKLDYGIDQVL--SMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-------GLISMHIS 327 (430)
Q Consensus 259 ~~~~~~id~lL--~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~ 327 (430)
....+.+|.+| +..+....++|||+|||+|..+..++++ .++++++ ++++.+.++|.++ ..+.++++
T Consensus 25 ~~~~~~~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~V--Eiq~~~a~~A~~nv~ln~l~~ri~v~~~ 102 (248)
T COG4123 25 CGFRYGTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGV--EIQEEAAEMAQRNVALNPLEERIQVIEA 102 (248)
T ss_pred CccccccHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEE--EeCHHHHHHHHHHHHhCcchhceeEehh
Confidence 34455566554 2233333677899999999999999998 4889988 6668888887765 23899999
Q ss_pred ccccCC--CCCCceeEEEEccchh---------------hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHH
Q 043503 328 VSQRLP--FFENTLDIVHSMHVLS---------------NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETY 390 (430)
Q Consensus 328 d~~~lp--f~d~sfDlV~~~~~L~---------------~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~ 390 (430)
|...+. ..-.+||+|+|+..+. ++.....++..++...++|||||.+.+.+ ..+...++
T Consensus 103 Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~----r~erl~ei 178 (248)
T COG4123 103 DIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH----RPERLAEI 178 (248)
T ss_pred hHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe----cHHHHHHH
Confidence 987765 3345799999965432 12223358889999999999999999865 33445678
Q ss_pred HHHHHHcCCEEEEEE
Q 043503 391 VPMLDRIGFKKLRWN 405 (430)
Q Consensus 391 ~~ll~~~Gfk~l~~~ 405 (430)
..++.+.+|...+..
T Consensus 179 ~~~l~~~~~~~k~i~ 193 (248)
T COG4123 179 IELLKSYNLEPKRIQ 193 (248)
T ss_pred HHHHHhcCCCceEEE
Confidence 889999999877766
No 79
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.11 E-value=1.9e-09 Score=102.29 Aligned_cols=125 Identities=19% Similarity=0.232 Sum_probs=90.3
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
.+|||+|||+|.++..+++.+..|+++ |+++.|++.++++ + .+.+..+|. +..+++||+|++..+++|
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~~~~v~~~--D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARRGAKVVAS--DISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHcCCEEEEE--ECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccCCcCEEEEcchhhc
Confidence 467999999999999999998888888 7778888887654 2 367777773 344688999999999866
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeec---------c----ccC--c-----CcHHHHHHHHHHcCCEEEEEEecc
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRF---------F----CFG--S-----QLNETYVPMLDRIGFKKLRWNVGM 408 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f---------~----~~~--~-----~~~~~~~~ll~~~Gfk~l~~~~~~ 408 (430)
+ ++.....++.++.+.+++|+.+.+... . ... . .....+.++++..||++.......
T Consensus 140 ~-~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 140 Y-PQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERIS 216 (230)
T ss_pred C-CHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeecc
Confidence 4 444578899999998766555443211 0 000 0 013568889999999988865433
No 80
>PRK14968 putative methyltransferase; Provisional
Probab=99.10 E-value=3.2e-09 Score=97.25 Aligned_cols=122 Identities=16% Similarity=0.207 Sum_probs=87.6
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC----eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL----ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~----i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
+++||+|||+|.++..+++++.+++++ |.++.+.+.++++ +. +.++..|... ++.+++||+|+++..+.
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~~v~~~--D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGKKVVGV--DINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYL 101 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcceEEEE--ECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcC
Confidence 356999999999999999999999988 6677777776543 22 6677777644 34556899999865442
Q ss_pred hcCC------------------chhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 350 NWIP------------------DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 350 ~~~~------------------d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
...+ ...+..++.++.++|+|||.+++.... ....+.+.+++.+.||++....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~---~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS---LTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc---cCCHHHHHHHHHHCCCeeeeee
Confidence 1000 112566899999999999998875432 1224668889999999877643
No 81
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.09 E-value=2.8e-09 Score=102.41 Aligned_cols=134 Identities=19% Similarity=0.264 Sum_probs=93.4
Q ss_pred HHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCC
Q 043503 263 YGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPF 334 (430)
Q Consensus 263 ~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf 334 (430)
..++.++...+.. ..+|||+|||+|.++..+++. +.+++++ |+++.+.+.++++ +. +.++.+|+.. ++
T Consensus 75 ~l~~~~l~~~~~~-~~~ilDig~G~G~~~~~l~~~~~~~~v~~i--D~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~ 150 (251)
T TIGR03534 75 ELVEAALERLKKG-PLRVLDLGTGSGAIALALAKERPDARVTAV--DISPEALAVARKNAARLGLDNVTFLQSDWFE-PL 150 (251)
T ss_pred HHHHHHHHhcccC-CCeEEEEeCcHhHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cC
Confidence 3455555544432 235799999999999999987 5688888 6667777766543 33 7788888755 45
Q ss_pred CCCceeEEEEccchhh------cCCc-----------------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHH
Q 043503 335 FENTLDIVHSMHVLSN------WIPD-----------------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYV 391 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~------~~~d-----------------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~ 391 (430)
++++||+|+++..... +.++ .....++.++.++|+|||.+++..- ....+.+.
T Consensus 151 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~----~~~~~~~~ 226 (251)
T TIGR03534 151 PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG----YDQGEAVR 226 (251)
T ss_pred cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----ccHHHHHH
Confidence 6789999999643321 1111 0124678999999999999998642 22346688
Q ss_pred HHHHHcCCEEEEE
Q 043503 392 PMLDRIGFKKLRW 404 (430)
Q Consensus 392 ~ll~~~Gfk~l~~ 404 (430)
+++.+.||+.+..
T Consensus 227 ~~l~~~gf~~v~~ 239 (251)
T TIGR03534 227 ALFEAAGFADVET 239 (251)
T ss_pred HHHHhCCCCceEE
Confidence 8899999987664
No 82
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.09 E-value=1.7e-09 Score=102.48 Aligned_cols=127 Identities=14% Similarity=0.134 Sum_probs=91.3
Q ss_pred CccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc------CCeeEEEcccccCCCCCCceeEEEEccch
Q 043503 276 TIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR------GLISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r------g~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
...++||+|+|.|+.+..+... --+|-.+ |+.+.+++.|++. +...+++...+.+....++||+|++++++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlV--Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLV--EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEE--ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEe--ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 4568899999999999988665 4455555 7788999988842 23678888888887556899999999999
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC------------cHHHHHHHHHHcCCEEEEEE
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ------------LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~------------~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.| ..|+++-.+|.++...|+|||.+++-+-.+.... ..+.+.++++++|+++++..
T Consensus 133 gh-LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 133 GH-LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp GG-S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred cc-CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 77 5566799999999999999999999776654432 23569999999999999855
No 83
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.09 E-value=8e-10 Score=104.87 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=78.4
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC--------CCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP--------FFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp--------f~d~sfDlV~~~~ 346 (430)
.+|||+|||+|.++..++++ +.+|+++|++ + |.. ...+.++++|+...+ +.+++||+|++..
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~--~-~~~----~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~ 125 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDIL--P-MDP----IVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDM 125 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecc--c-ccC----CCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCC
Confidence 35799999999999999887 2589999664 3 211 122688899987753 5678999999965
Q ss_pred chhhcCCch---------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 347 VLSNWIPDS---------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 347 ~L~~~~~d~---------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+. ++.... ....+|.++.++|+|||.|++..|-. ....++...+ +..|..+...
T Consensus 126 ~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~---~~~~~~l~~l-~~~f~~v~~~ 188 (209)
T PRK11188 126 AP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG---EGFDEYLREI-RSLFTKVKVR 188 (209)
T ss_pred CC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC---cCHHHHHHHH-HhCceEEEEE
Confidence 44 333211 12568999999999999999976542 2222232222 2367777653
No 84
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.07 E-value=1.7e-09 Score=104.81 Aligned_cols=138 Identities=23% Similarity=0.347 Sum_probs=104.1
Q ss_pred CccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCch
Q 043503 276 TIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
...++||||+|.|..+..|+..-.+|.++ +.|..|....+++|.--+-..+.+ -.+.+||+|.|.+++.. ..+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aT--E~S~~Mr~rL~~kg~~vl~~~~w~---~~~~~fDvIscLNvLDR-c~~- 166 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYAT--EASPPMRWRLSKKGFTVLDIDDWQ---QTDFKFDVISCLNVLDR-CDR- 166 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEee--cCCHHHHHHHHhCCCeEEehhhhh---ccCCceEEEeehhhhhc-cCC-
Confidence 44567999999999999999887778887 889999999999987322222322 23568999999999976 333
Q ss_pred hHHHHHHHHHHhccCCcEEEEeecc------ccCc--C------------c----HHHHHHHHHHcCCEEEEEEeccccc
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRFF------CFGS--Q------------L----NETYVPMLDRIGFKKLRWNVGMKLD 411 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f~------~~~~--~------------~----~~~~~~ll~~~Gfk~l~~~~~~k~~ 411 (430)
+..+|.+|.+.|+|+|.+++.-.+ ..+. . . ...+.+.++.+||++.+|...+...
T Consensus 167 -P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~PYLc 245 (265)
T PF05219_consen 167 -PLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLPYLC 245 (265)
T ss_pred -HHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccCccc
Confidence 788999999999999999864322 2221 0 0 0113378899999999999999998
Q ss_pred CCCchhHHHh
Q 043503 412 RGVKKNEWYF 421 (430)
Q Consensus 412 ~g~~~~~~~l 421 (430)
.|--+.+.|+
T Consensus 246 EGD~~~~~Y~ 255 (265)
T PF05219_consen 246 EGDLYQSYYV 255 (265)
T ss_pred cCcccCceEE
Confidence 8876666654
No 85
>PRK14967 putative methyltransferase; Provisional
Probab=99.07 E-value=5.6e-09 Score=99.63 Aligned_cols=123 Identities=18% Similarity=0.140 Sum_probs=85.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+|||+|||+|.++..++..+. +|+++ |+++.+++.++++ +. +.++.+|+.. .+++++||+|+++......
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~v--D~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAV--DISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEE--ECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence 4569999999999999998765 88888 6667777665543 43 6677777755 2456799999996433110
Q ss_pred CC------------------chhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEe
Q 043503 352 IP------------------DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 352 ~~------------------d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
.. ...+..++.++.++|+|||.+++.+--. .....+...+++.||.......
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~ 184 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL---SGVERTLTRLSEAGLDAEVVAS 184 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc---cCHHHHHHHHHHCCCCeEEEEe
Confidence 00 0124668889999999999999753221 1235677788889997666543
No 86
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.07 E-value=2.5e-09 Score=109.98 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=79.5
Q ss_pred HHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHh----cCC--eeEEEcccccC--CCCC
Q 043503 267 QVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIAS----RGL--ISMHISVSQRL--PFFE 336 (430)
Q Consensus 267 ~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~----rg~--i~~~~~d~~~l--pf~d 336 (430)
.++....+....++||||||+|.++..+|.+ +..++|+ |++.++++.+.+ +|+ +.++.+|+..+ .+++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGI--EI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~ 190 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGI--EIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPS 190 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEE--ECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCC
Confidence 4444344333456899999999999999998 5778888 667777665543 343 78889998664 4778
Q ss_pred CceeEEEEccchhhcCCch----hHHHHHHHHHHhccCCcEEEEe
Q 043503 337 NTLDIVHSMHVLSNWIPDS----MLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~----~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+++|.|++.+.. .|.... ....++.++.|+|+|||.+.+.
T Consensus 191 ~s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 191 NSVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred CceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 999999996554 554321 1257999999999999999884
No 87
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.05 E-value=2.1e-09 Score=109.42 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=80.4
Q ss_pred ecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHh----cCC-eeEEEcc
Q 043503 256 IDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIAS----RGL-ISMHISV 328 (430)
Q Consensus 256 ~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~----rg~-i~~~~~d 328 (430)
|.....+.....++..++.....+|||+|||+|.++..++++ +.+|+++ |+++.+++.+++ ++. ..++..|
T Consensus 176 Fs~~~lD~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~v--Dis~~Al~~A~~nl~~n~l~~~~~~~D 253 (342)
T PRK09489 176 FSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLS--DVSAAALESSRATLAANGLEGEVFASN 253 (342)
T ss_pred CCCCCCCHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCEEEEcc
Confidence 333334433344444333222235799999999999999987 4588888 666777776654 343 4455666
Q ss_pred cccCCCCCCceeEEEEccchhhcCC--chhHHHHHHHHHHhccCCcEEEEee
Q 043503 329 SQRLPFFENTLDIVHSMHVLSNWIP--DSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 329 ~~~lpf~d~sfDlV~~~~~L~~~~~--d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
... ..++.||+|+|+..++.... ......++.++.+.|+|||.+++..
T Consensus 254 ~~~--~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 254 VFS--DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred ccc--ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 533 23578999999887743221 2346789999999999999998753
No 88
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.04 E-value=1.8e-09 Score=101.94 Aligned_cols=89 Identities=20% Similarity=0.238 Sum_probs=68.1
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~ 347 (430)
.+|||+|||+|.++..+++. +.+|+++ |.++.+.+.++++ + .+.++.+|+.......++||+|++...
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~i--D~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 151 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTV--EIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAA 151 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccC
Confidence 45699999999999998876 3688888 6667777766643 3 278888888765445679999999776
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+.+ . ..++.++|+|||++++.
T Consensus 152 ~~~-~--------~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 152 AST-I--------PSALVRQLKDGGVLVIP 172 (205)
T ss_pred cch-h--------hHHHHHhcCcCcEEEEE
Confidence 643 2 24788999999999884
No 89
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.03 E-value=1.6e-09 Score=104.25 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=89.1
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEE
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVH 343 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~ 343 (430)
+.+....+....++|+|||+|+|.++..++++ +.+++..|+ +..++.+.+...+.++.+|+. -++|. +|+|+
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl---p~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~ 163 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL---PEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYL 163 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE----HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEE
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc---HhhhhccccccccccccccHH-hhhcc--cccee
Confidence 34444555667788999999999999999988 788887755 777777777777999999986 55555 99999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCC--cEEEEeeccccCcC
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPG--GIFWLDRFFCFGSQ 385 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPG--G~lvl~~f~~~~~~ 385 (430)
..+++++|.++ ....+|+++++.|+|| |.++|.+++..+..
T Consensus 164 l~~vLh~~~d~-~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 164 LRHVLHDWSDE-DCVKILRNAAAALKPGKDGRLLIIEMVLPDDR 206 (241)
T ss_dssp EESSGGGS-HH-HHHHHHHHHHHHSEECTTEEEEEEEEEECSSS
T ss_pred eehhhhhcchH-HHHHHHHHHHHHhCCCCCCeEEEEeeccCCCC
Confidence 99999887654 6889999999999999 99999888755443
No 90
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.03 E-value=4.8e-09 Score=98.34 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=81.5
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccC-CCCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRL-PFFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~l-pf~d~sfDlV~~~~ 346 (430)
.+|||+|||+|.++..++.. +.+|+++ |.++.+++.++++ + .+.++.+|.... +..++.||.|++..
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~~~~~~v~av--D~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLVGETGKVYAV--DKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 45699999999999988764 4688888 6677787766543 4 267777877553 33346899999853
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEE
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKK 401 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~ 401 (430)
.. . .+..++.++.++|+|||++++.... .+......+.+++.||..
T Consensus 120 ~~----~--~~~~~l~~~~~~LkpgG~lv~~~~~---~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 120 GS----E--KLKEIISASWEIIKKGGRIVIDAIL---LETVNNALSALENIGFNL 165 (198)
T ss_pred Cc----c--cHHHHHHHHHHHcCCCcEEEEEeec---HHHHHHHHHHHHHcCCCe
Confidence 21 2 2678999999999999999874322 123356777888899853
No 91
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.02 E-value=2.1e-09 Score=101.19 Aligned_cols=130 Identities=16% Similarity=0.203 Sum_probs=79.8
Q ss_pred ecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCC
Q 043503 256 IDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFF 335 (430)
Q Consensus 256 ~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~ 335 (430)
++..-.+..|+.+. ..|.. -+|-|+|||.+.+|..+. .+.+|...|+-.. + -.+...|+..+|++
T Consensus 55 WP~nPvd~iI~~l~-~~~~~--~viaD~GCGdA~la~~~~-~~~~V~SfDLva~---------n--~~Vtacdia~vPL~ 119 (219)
T PF05148_consen 55 WPVNPVDVIIEWLK-KRPKS--LVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP---------N--PRVTACDIANVPLE 119 (219)
T ss_dssp SSS-HHHHHHHHHC-TS-TT--S-EEEES-TT-HHHHH---S---EEEEESS-S---------S--TTEEES-TTS-S--
T ss_pred CCCCcHHHHHHHHH-hcCCC--EEEEECCCchHHHHHhcc-cCceEEEeeccCC---------C--CCEEEecCccCcCC
Confidence 34444555454443 23332 357999999999997754 4678888865221 1 24678899999999
Q ss_pred CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 336 ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 336 d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
++++|+|++...|- -.+ +..++.|+.|+|||||.++|.+.-..= ...+.....+++.||+.....
T Consensus 120 ~~svDv~VfcLSLM--GTn--~~~fi~EA~RvLK~~G~L~IAEV~SRf-~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 120 DESVDVAVFCLSLM--GTN--WPDFIREANRVLKPGGILKIAEVKSRF-ENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp TT-EEEEEEES-----SS---HHHHHHHHHHHEEEEEEEEEEEEGGG--S-HHHHHHHHHCTTEEEEEEE
T ss_pred CCceeEEEEEhhhh--CCC--cHHHHHHHHheeccCcEEEEEEecccC-cCHHHHHHHHHHCCCeEEecc
Confidence 99999999976662 233 889999999999999999998754322 234667788999999987744
No 92
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.01 E-value=1.5e-09 Score=92.00 Aligned_cols=97 Identities=20% Similarity=0.285 Sum_probs=73.7
Q ss_pred EEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHhc-------CCeeEEEcccccCC--CCCCceeEEEEccch
Q 043503 279 IGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIASR-------GLISMHISVSQRLP--FFENTLDIVHSMHVL 348 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~~~lp--f~d~sfDlV~~~~~L 348 (430)
+|||+|||+|.++..+++.+ .+++++|+ ++...+.++.+ ..+.++++|..... +++++||+|+++...
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi--~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDI--DPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEES--SHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEE--CHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 57999999999999999998 89999955 46666666543 23899999987765 778999999998666
Q ss_pred hhcCC-----chhHHHHHHHHHHhccCCcEEEEe
Q 043503 349 SNWIP-----DSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 349 ~~~~~-----d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
..... ......++.++.++|||||.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 43211 113567899999999999999875
No 93
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.99 E-value=1.4e-09 Score=103.94 Aligned_cols=175 Identities=17% Similarity=0.309 Sum_probs=118.2
Q ss_pred cccceeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--C--CEEEEEecCCChhHHHHHHhcCC----
Q 043503 250 EKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--N--VTIITTSLNLDGPFNSFIASRGL---- 321 (430)
Q Consensus 250 e~~~~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g--~~Vv~vdiD~s~~~le~a~~rg~---- 321 (430)
++.+++.+++.+..-...++...... ..++|+||||.|.....+.+- + ..|+++ |.++..++..+++..
T Consensus 46 ~~~rFfkdR~wL~~Efpel~~~~~~~-~~~ilEvGCGvGNtvfPll~~~~n~~l~v~ac--Dfsp~Ai~~vk~~~~~~e~ 122 (264)
T KOG2361|consen 46 HENRFFKDRNWLLREFPELLPVDEKS-AETILEVGCGVGNTVFPLLKTSPNNRLKVYAC--DFSPRAIELVKKSSGYDES 122 (264)
T ss_pred ccccccchhHHHHHhhHHhhCccccC-hhhheeeccCCCcccchhhhcCCCCCeEEEEc--CCChHHHHHHHhccccchh
Confidence 44444444444443344444332222 114599999999888888776 3 677777 888888888877622
Q ss_pred -eeEEEccc--c--cCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC-------------
Q 043503 322 -ISMHISVS--Q--RLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG------------- 383 (430)
Q Consensus 322 -i~~~~~d~--~--~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~------------- 383 (430)
+...+.|+ . .-|.+.+++|+|.+.+++.. ++.+.....+.++.++|||||.+++-+|...+
T Consensus 123 ~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSA-i~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~ 201 (264)
T KOG2361|consen 123 RVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSA-IHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCIS 201 (264)
T ss_pred hhcccceeccchhccCCCCcCccceEEEEEEEec-cChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceee
Confidence 22223332 1 23467899999999999966 44446889999999999999999986654311
Q ss_pred --------cC-----cHHHHHHHHHHcCCEEEEEEeccc----ccCCCchhHHHhHhhccCC
Q 043503 384 --------SQ-----LNETYVPMLDRIGFKKLRWNVGMK----LDRGVKKNEWYFSAVLEKP 428 (430)
Q Consensus 384 --------~~-----~~~~~~~ll~~~Gfk~l~~~~~~k----~~~g~~~~~~~lsa~leKp 428 (430)
+. ..+++..++.++||..++..+... ..++....++++.+.++||
T Consensus 202 ~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~k~ 263 (264)
T KOG2361|consen 202 ENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVDCRLLVNRKKQLKMYRVWVQAKFQKP 263 (264)
T ss_pred cceEEccCCceeeeccHHHHHHHHHhcccchhcccceeeeeeehhccCccceEEEEEEeecC
Confidence 11 235688999999999776554422 2356778889999999988
No 94
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.99 E-value=2.7e-09 Score=98.14 Aligned_cols=122 Identities=21% Similarity=0.321 Sum_probs=92.3
Q ss_pred cEEEEEcCCccHHHHHHHHcCCE--EEEEecCCChhHHHHHH---hc-CC---eeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRERNVT--IITTSLNLDGPFNSFIA---SR-GL---ISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~--Vv~vdiD~s~~~le~a~---~r-g~---i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.+...|++.|.+ .+|+ |.++..++.|+ ++ +. |.|.+.|...-.+..++||+|+--..+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~Gv--DYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGV--DYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCcccc--ccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 36799999999999999999654 4666 88887776553 22 33 889999987767788999999986555
Q ss_pred hhc-----CCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 349 SNW-----IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 349 ~~~-----~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
... .+.+.+..++..+.++|+|||.|+|+. |+- ..+++.+.++..||++....
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS--CN~--T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS--CNF--TKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEe--cCc--cHHHHHHHHhcCCeEEEEee
Confidence 321 123345668999999999999999974 533 35778889999999887644
No 95
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.99 E-value=3.1e-09 Score=96.58 Aligned_cols=73 Identities=25% Similarity=0.279 Sum_probs=62.8
Q ss_pred cCCChhHHHHHHhc----C-----CeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 306 LNLDGPFNSFIASR----G-----LISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 306 iD~s~~~le~a~~r----g-----~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
+|+|+.|++.|+++ + .+.++++|++.+|+++++||+|++..++++ +++ ...++++++|+|||||.|++
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~-~~d--~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRN-VVD--RLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred EcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhc-CCC--HHHHHHHHHHHcCcCeEEEE
Confidence 48999999988654 1 378999999999999999999999999954 555 78999999999999999998
Q ss_pred eeccc
Q 043503 377 DRFFC 381 (430)
Q Consensus 377 ~~f~~ 381 (430)
.++..
T Consensus 80 ~d~~~ 84 (160)
T PLN02232 80 LDFNK 84 (160)
T ss_pred EECCC
Confidence 87754
No 96
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.98 E-value=1.4e-08 Score=100.67 Aligned_cols=119 Identities=14% Similarity=0.143 Sum_probs=85.0
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.++..++.+ +.+|+++ |+++.+++.|+++ +. +.++.+|+.. ++++++||+|+++...
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~av--Dis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAV--DISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 46799999999999999987 5788888 6678887776654 43 7888888643 2345689999996321
Q ss_pred hh------------cCCc----------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEE
Q 043503 349 SN------------WIPD----------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 349 ~~------------~~~d----------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
.. +.+. .....++.++.++|+|||++++..-. ..+.+.+++...||.-...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-----~~~~v~~~~~~~~~~~~~~ 272 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-----SMEALEEAYPDVPFTWLEF 272 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-----CHHHHHHHHHhCCCceeee
Confidence 10 0110 12356889999999999999986421 2257888888899876543
No 97
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.98 E-value=2e-08 Score=98.07 Aligned_cols=142 Identities=16% Similarity=0.222 Sum_probs=95.3
Q ss_pred cCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc------CCeeEEEcc
Q 043503 257 DNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR------GLISMHISV 328 (430)
Q Consensus 257 ~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r------g~i~~~~~d 328 (430)
+....+..++.++.........+|||+|||+|.++..++.. ..+++++ |+++.+++.++++ ..+.++.+|
T Consensus 89 pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~i--Dis~~~l~~a~~n~~~~~~~~i~~~~~d 166 (275)
T PRK09328 89 PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAV--DISPEALAVARRNAKHGLGARVEFLQGD 166 (275)
T ss_pred CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 33344555555553333223345799999999999999987 4788888 6677777777654 237888888
Q ss_pred cccCCCCCCceeEEEEccchhh------cCCc-----------------hhHHHHHHHHHHhccCCcEEEEeeccccCcC
Q 043503 329 SQRLPFFENTLDIVHSMHVLSN------WIPD-----------------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ 385 (430)
Q Consensus 329 ~~~lpf~d~sfDlV~~~~~L~~------~~~d-----------------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~ 385 (430)
... ++++++||+|+++..... ..++ .....++.++.++|+|||++++.. +..
T Consensus 167 ~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~----g~~ 241 (275)
T PRK09328 167 WFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI----GYD 241 (275)
T ss_pred ccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE----Cch
Confidence 643 233578999999643211 0000 123568888999999999999843 223
Q ss_pred cHHHHHHHHHHcCCEEEEEE
Q 043503 386 LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 386 ~~~~~~~ll~~~Gfk~l~~~ 405 (430)
..+.+..++.+.||..+...
T Consensus 242 ~~~~~~~~l~~~gf~~v~~~ 261 (275)
T PRK09328 242 QGEAVRALLAAAGFADVETR 261 (275)
T ss_pred HHHHHHHHHHhCCCceeEEe
Confidence 34668889999999866543
No 98
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.98 E-value=4.8e-09 Score=99.63 Aligned_cols=89 Identities=17% Similarity=0.121 Sum_probs=68.6
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||||||+|.++..+++. +.+|+++ |+++.+.+.++++ | .+.++.+|......+++.||+|++....
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~v--E~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~ 155 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTI--ERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAG 155 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCc
Confidence 45699999999999988876 3688888 6678888777654 3 3888999987655567899999996554
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.+ +...+.+.|||||.+++.
T Consensus 156 ~~---------~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 156 PD---------IPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred cc---------chHHHHHhhCCCcEEEEE
Confidence 22 234667789999999884
No 99
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=9.2e-09 Score=101.82 Aligned_cols=123 Identities=19% Similarity=0.234 Sum_probs=86.7
Q ss_pred cceeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----CC-e-e
Q 043503 252 SRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----GL-I-S 323 (430)
Q Consensus 252 ~~~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----g~-i-~ 323 (430)
..-+|..+..|..-+-+++.++......|||+|||.|.+++.+++.. .+++-+ |.+...++.++++ +. . .
T Consensus 134 ~pGVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmv--Dvn~~Av~~ar~Nl~~N~~~~~~ 211 (300)
T COG2813 134 LPGVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLV--DVNARAVESARKNLAANGVENTE 211 (300)
T ss_pred CCCCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEE--ecCHHHHHHHHHhHHHcCCCccE
Confidence 33467777788877777777765544577999999999999999984 577777 5556666666544 33 2 3
Q ss_pred EEEcccccCCCCCCceeEEEEccchhhcCCc--hhHHHHHHHHHHhccCCcEEEEee
Q 043503 324 MHISVSQRLPFFENTLDIVHSMHVLSNWIPD--SMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 324 ~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d--~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
++..+... +..+ +||+|+|+..++.-..- ....+++.+..+.|++||.+|+.-
T Consensus 212 v~~s~~~~-~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 212 VWASNLYE-PVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred EEEecccc-cccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 45554322 2334 99999999888543221 123489999999999999999863
No 100
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.96 E-value=4.6e-09 Score=100.45 Aligned_cols=141 Identities=18% Similarity=0.134 Sum_probs=97.4
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHH-hcC-----------------CeeEEE
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIA-SRG-----------------LISMHI 326 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~-~rg-----------------~i~~~~ 326 (430)
+.+++.......-.+||..|||.|.-+..|+++|.+|+|+ |+++..++.+. +++ .|.+++
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGv--Dls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGV--DLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEE--ES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEE--ecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 3344433233333467999999999999999999999998 77787777663 332 257889
Q ss_pred cccccCCCCC-CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc-ccC----cC---cHHHHHHHHHHc
Q 043503 327 SVSQRLPFFE-NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF-CFG----SQ---LNETYVPMLDRI 397 (430)
Q Consensus 327 ~d~~~lpf~d-~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~-~~~----~~---~~~~~~~ll~~~ 397 (430)
+|+-.++-.. ++||+|+-..++. .++.+....+...+.++|+|||.+++..+. ... +. ..+++.+++. .
T Consensus 104 gDfF~l~~~~~g~fD~iyDr~~l~-Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~ 181 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLIYDRTFLC-ALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-P 181 (218)
T ss_dssp S-TTTGGGSCHHSEEEEEECSSTT-TS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-T
T ss_pred cccccCChhhcCCceEEEEecccc-cCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-C
Confidence 9988776433 4799999988884 466678999999999999999995443322 211 11 2356777777 8
Q ss_pred CCEEEEEEeccc
Q 043503 398 GFKKLRWNVGMK 409 (430)
Q Consensus 398 Gfk~l~~~~~~k 409 (430)
+|++........
T Consensus 182 ~f~i~~l~~~~~ 193 (218)
T PF05724_consen 182 GFEIEELEEEDS 193 (218)
T ss_dssp TEEEEEEEEEE-
T ss_pred CcEEEEEecccc
Confidence 899887775443
No 101
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.95 E-value=2.2e-08 Score=103.83 Aligned_cols=140 Identities=17% Similarity=0.174 Sum_probs=95.7
Q ss_pred cCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC-eeEEEccc
Q 043503 257 DNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL-ISMHISVS 329 (430)
Q Consensus 257 ~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~ 329 (430)
+....+..++.++...+.+ .++||+|||+|.++..++.. +.+|+++ |+++.+++.++++ +. +.++.+|.
T Consensus 234 PRpeTE~LVe~aL~~l~~~--~rVLDLGcGSG~IaiaLA~~~p~a~VtAV--DiS~~ALe~AreNa~~~g~rV~fi~gDl 309 (423)
T PRK14966 234 PRPETEHLVEAVLARLPEN--GRVWDLGTGSGAVAVTVALERPDAFVRAS--DISPPALETARKNAADLGARVEFAHGSW 309 (423)
T ss_pred CCccHHHHHHHhhhccCCC--CEEEEEeChhhHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcCCcEEEEEcch
Confidence 3444555566666544422 35799999999999998865 6788888 6678888877654 33 78888887
Q ss_pred ccCCC-CCCceeEEEEccchhhcC--------------------Cc--hhHHHHHHHHHHhccCCcEEEEeeccccCcCc
Q 043503 330 QRLPF-FENTLDIVHSMHVLSNWI--------------------PD--SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQL 386 (430)
Q Consensus 330 ~~lpf-~d~sfDlV~~~~~L~~~~--------------------~d--~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~ 386 (430)
....+ .+++||+|+|+.....-. .+ +..+.++.++.+.|+|||.+++.. +...
T Consensus 310 ~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi----G~~Q 385 (423)
T PRK14966 310 FDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH----GFDQ 385 (423)
T ss_pred hccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE----CccH
Confidence 54333 245899999965331100 00 123467778889999999988743 2334
Q ss_pred HHHHHHHHHHcCCEEEEE
Q 043503 387 NETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 387 ~~~~~~ll~~~Gfk~l~~ 404 (430)
.+.+.+++.+.||..++.
T Consensus 386 ~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 386 GAAVRGVLAENGFSGVET 403 (423)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 567888999999986654
No 102
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.94 E-value=5.4e-09 Score=99.20 Aligned_cols=89 Identities=17% Similarity=0.094 Sum_probs=67.1
Q ss_pred cEEEEEcCCccHHHHHHHHcC---CEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRERN---VTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g---~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||||||+|.+++.+++.. .+|+++ |.++.+.+.|+++ | .+.++.+|.........+||+|++....
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~v--D~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSI--ERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAG 156 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEE--eCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCCc
Confidence 456999999999999999873 358888 6678888777654 4 3788888876654445689999986544
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.+ +...+.+.|+|||++++.
T Consensus 157 ~~---------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 157 PK---------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred cc---------ccHHHHHhcCcCcEEEEE
Confidence 22 234678899999999884
No 103
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.94 E-value=2.9e-09 Score=99.14 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=88.6
Q ss_pred cEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccc-cCC-CCCCceeEEEEccchhhcCCc
Q 043503 278 RIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQ-RLP-FFENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~-~lp-f~d~sfDlV~~~~~L~~~~~d 354 (430)
.+|||+|||.|.+..+|.+. ++++.|+ ++++..+..+.++|+ .++++|++ .++ |+|++||.|+++.++.+ +..
T Consensus 15 srVLDLGCGdG~LL~~L~~~k~v~g~Gv--Eid~~~v~~cv~rGv-~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~-~~~ 90 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEKQVDGYGV--EIDPDNVAACVARGV-SVIQGDLDEGLADFPDQSFDYVILSQTLQA-VRR 90 (193)
T ss_pred CEEEecCCCchHHHHHHHHhcCCeEEEE--ecCHHHHHHHHHcCC-CEEECCHHHhHhhCCCCCccEEehHhHHHh-HhH
Confidence 34599999999999999885 8888888 555777788888887 67888764 454 88999999999999955 444
Q ss_pred hhHHHHHHHHHHhccCCcEEEEe--ec--------------cccC----------cC----cHHHHHHHHHHcCCEEEEE
Q 043503 355 SMLEFTLYDIYRLLRPGGIFWLD--RF--------------FCFG----------SQ----LNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lvl~--~f--------------~~~~----------~~----~~~~~~~ll~~~Gfk~l~~ 404 (430)
.+.+|.|+.|+-| ..+++ .| ++.. +. ..+++..++++.|+++++.
T Consensus 91 --P~~vL~EmlRVgr---~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~ 165 (193)
T PF07021_consen 91 --PDEVLEEMLRVGR---RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEER 165 (193)
T ss_pred --HHHHHHHHHHhcC---eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEE
Confidence 7889999988855 33321 11 0000 01 2467888999999999976
Q ss_pred Ee
Q 043503 405 NV 406 (430)
Q Consensus 405 ~~ 406 (430)
..
T Consensus 166 ~~ 167 (193)
T PF07021_consen 166 VF 167 (193)
T ss_pred EE
Confidence 54
No 104
>PTZ00146 fibrillarin; Provisional
Probab=98.94 E-value=1.9e-08 Score=99.83 Aligned_cols=123 Identities=17% Similarity=0.210 Sum_probs=83.7
Q ss_pred cEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChh----HHHHHHhcCCeeEEEccccc---CCCCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGP----FNSFIASRGLISMHISVSQR---LPFFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~----~le~a~~rg~i~~~~~d~~~---lpf~d~sfDlV~~~~~ 347 (430)
.+|||+|||+|.++..+++. + .+|+++| +++. +++.++.+..+.++..|+.. +.....+||+|++...
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD--~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVE--FSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA 211 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEE--CcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCC
Confidence 45799999999999999998 2 5799984 5554 55666666567777888743 2223458999999643
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeecc-ccCcC-cHHHH----HHHHHHcCCEEEEEEec
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF-CFGSQ-LNETY----VPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~-~~~~~-~~~~~----~~ll~~~Gfk~l~~~~~ 407 (430)
.++ ....++.++.++|||||+|++..-. +.+.. ..+++ .+.+++.||+.++...-
T Consensus 212 ----~pd-q~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L 272 (293)
T PTZ00146 212 ----QPD-QARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTL 272 (293)
T ss_pred ----Ccc-hHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 233 2556778999999999999984211 11111 11222 36789999998876543
No 105
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.93 E-value=2.5e-08 Score=98.81 Aligned_cols=141 Identities=16% Similarity=0.188 Sum_probs=91.9
Q ss_pred cCCchhHHHHHHHccC-CCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC---eeEEE
Q 043503 257 DNGKLDYGIDQVLSMK-PLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL---ISMHI 326 (430)
Q Consensus 257 ~~~~~~~~id~lL~~~-p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~ 326 (430)
+.......++..+... +.....+|||+|||+|.++..++.. +.+|+++ |+++.+++.++++ +. +.++.
T Consensus 94 Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~av--Dis~~al~~a~~n~~~~~~~~~v~~~~ 171 (284)
T TIGR00536 94 PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAV--DISPDALAVAEENAEKNQLEHRVEFIQ 171 (284)
T ss_pred CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 3333444455554332 2222146799999999999999987 4788888 6677777777654 32 78888
Q ss_pred cccccCCCCCCceeEEEEccchh------------hcCCc----------hhHHHHHHHHHHhccCCcEEEEeeccccCc
Q 043503 327 SVSQRLPFFENTLDIVHSMHVLS------------NWIPD----------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGS 384 (430)
Q Consensus 327 ~d~~~lpf~d~sfDlV~~~~~L~------------~~~~d----------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~ 384 (430)
+|... ++++++||+|+++.... ++.|. .....++.++.+.|+|||++++..- .
T Consensus 172 ~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g----~ 246 (284)
T TIGR00536 172 SNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG----N 246 (284)
T ss_pred Cchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC----c
Confidence 88644 34455899999962211 11111 1356789999999999999988542 2
Q ss_pred CcHHHHHHHHH-HcCCEEEEE
Q 043503 385 QLNETYVPMLD-RIGFKKLRW 404 (430)
Q Consensus 385 ~~~~~~~~ll~-~~Gfk~l~~ 404 (430)
.....+.+++. ..||..+..
T Consensus 247 ~q~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 247 WQQKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred cHHHHHHHHHHhcCCCceeEE
Confidence 23356677777 468876554
No 106
>PLN03075 nicotianamine synthase; Provisional
Probab=98.93 E-value=7.9e-09 Score=102.76 Aligned_cols=99 Identities=11% Similarity=0.087 Sum_probs=72.8
Q ss_pred CccEEEEEcCCccHHHHHH-HH-c--CCEEEEEecCCChhHHHHHHhc--------CCeeEEEcccccCCCCCCceeEEE
Q 043503 276 TIRIGLDIGGGTGTFAARM-RE-R--NVTIITTSLNLDGPFNSFIASR--------GLISMHISVSQRLPFFENTLDIVH 343 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~L-a~-~--g~~Vv~vdiD~s~~~le~a~~r--------g~i~~~~~d~~~lpf~d~sfDlV~ 343 (430)
..++|+|||||.|.++..+ +. . +.+++++ |.++.+++.|++. ..+.|..+|+...+-..+.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~gi--D~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNF--DIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEE--eCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence 3466799999988554443 32 2 5678888 5567777666542 238999999876543357899999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+. ++++|.+. ....++..+.+.|+|||++++-.
T Consensus 201 ~~-ALi~~dk~-~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 201 LA-ALVGMDKE-EKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred Ee-cccccccc-cHHHHHHHHHHhcCCCcEEEEec
Confidence 97 88676433 47899999999999999999864
No 107
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.93 E-value=3e-09 Score=101.65 Aligned_cols=97 Identities=21% Similarity=0.322 Sum_probs=72.8
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEc-------ccccCCCCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHIS-------VSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~-------d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
|.++|+|||+|.-++.+++.--+|+++ |+++.|++.|++.-.+..... +...|--.+++.|+|.|.-++ |
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIat--D~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~-H 111 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIAT--DVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV-H 111 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheee--cCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH-H
Confidence 368999999997777777777788988 888999999987755333221 223333348999999999999 8
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
|.+ ++.+++++.|+||+.|-++....+
T Consensus 112 WFd---le~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 112 WFD---LERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred hhc---hHHHHHHHHHHcCCCCCEEEEEEc
Confidence 873 789999999999997744333333
No 108
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.90 E-value=4.5e-08 Score=95.50 Aligned_cols=140 Identities=16% Similarity=0.225 Sum_probs=92.1
Q ss_pred cCCchhHHHHHHHccCCC-CCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CCeeEEEccc
Q 043503 257 DNGKLDYGIDQVLSMKPL-GTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GLISMHISVS 329 (430)
Q Consensus 257 ~~~~~~~~id~lL~~~p~-~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~ 329 (430)
+.......++.++...+. ....+|||+|||+|.++..+++. +.+|+++ |+++.+++.++++ + ..++.+|.
T Consensus 66 pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~v--Dis~~al~~A~~N~~~~~-~~~~~~D~ 142 (251)
T TIGR03704 66 PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAA--DIDPAAVRCARRNLADAG-GTVHEGDL 142 (251)
T ss_pred CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcC-CEEEEeec
Confidence 334445555655543321 12236799999999999999876 5688888 6667777776654 3 47788886
Q ss_pred cc-CCC-CCCceeEEEEccchhh-------------cCC--------c--hhHHHHHHHHHHhccCCcEEEEeeccccCc
Q 043503 330 QR-LPF-FENTLDIVHSMHVLSN-------------WIP--------D--SMLEFTLYDIYRLLRPGGIFWLDRFFCFGS 384 (430)
Q Consensus 330 ~~-lpf-~d~sfDlV~~~~~L~~-------------~~~--------d--~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~ 384 (430)
.. ++- ..++||+|+++..... +.+ + +....++..+.+.|+|||++++.+- .
T Consensus 143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~----~ 218 (251)
T TIGR03704 143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS----E 218 (251)
T ss_pred hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC----c
Confidence 54 221 1357999999743311 000 0 1135788888899999999998642 2
Q ss_pred CcHHHHHHHHHHcCCEEEE
Q 043503 385 QLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 385 ~~~~~~~~ll~~~Gfk~l~ 403 (430)
.....+..++++.||+...
T Consensus 219 ~~~~~v~~~l~~~g~~~~~ 237 (251)
T TIGR03704 219 RQAPLAVEAFARAGLIARV 237 (251)
T ss_pred chHHHHHHHHHHCCCCcee
Confidence 2346688889999987554
No 109
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.90 E-value=4.6e-08 Score=98.16 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=83.7
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.++..++.. +.+|+++ |+++.+++.|+++ + .+.++.+|+.. ++++++||+|+++...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~av--Dis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAV--DISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEE--eCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCC
Confidence 46799999999999999987 5788888 6678887776654 4 27888888643 2345689999996321
Q ss_pred h------------hcCCc----------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEE
Q 043503 349 S------------NWIPD----------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 349 ~------------~~~~d----------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
. ++.|. .....++.++.+.|+|||++++..-. . ...+..++.+.||.....
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~----~-~~~~~~~~~~~~~~~~~~ 284 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN----S-RVHLEEAYPDVPFTWLEF 284 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc----C-HHHHHHHHhhCCCEEEEe
Confidence 1 01111 12357889999999999999985322 1 345777788888765543
No 110
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.88 E-value=2.4e-08 Score=92.68 Aligned_cols=94 Identities=19% Similarity=0.226 Sum_probs=65.0
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC--------CCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP--------FFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp--------f~d~sfDlV~~~~ 346 (430)
.+|||+|||+|.++..++++ ..+|+++|++ +.+ ....+.++.+|....+ +++++||+|++..
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis--~~~-----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~ 106 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQ--PMK-----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDA 106 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEecc--ccc-----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCC
Confidence 45699999999999988876 3478988554 432 1223567777775532 4567899999853
Q ss_pred ch---hhcCCc-----hhHHHHHHHHHHhccCCcEEEEee
Q 043503 347 VL---SNWIPD-----SMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 347 ~L---~~~~~d-----~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.. ..|..+ +....++.++.++|+|||++++..
T Consensus 107 ~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 107 APNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 21 111111 124679999999999999999864
No 111
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.87 E-value=1.1e-08 Score=98.74 Aligned_cols=127 Identities=17% Similarity=0.257 Sum_probs=88.3
Q ss_pred cCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCC
Q 043503 257 DNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFE 336 (430)
Q Consensus 257 ~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d 336 (430)
+..-++..|+.+ ...+.. -+|-|+|||.+.+|. .....|..+|+- + . .-.++..|+.++|++|
T Consensus 164 P~nPld~ii~~i-k~r~~~--~vIaD~GCGEakiA~---~~~~kV~SfDL~--a-------~--~~~V~~cDm~~vPl~d 226 (325)
T KOG3045|consen 164 PENPLDVIIRKI-KRRPKN--IVIADFGCGEAKIAS---SERHKVHSFDLV--A-------V--NERVIACDMRNVPLED 226 (325)
T ss_pred CCChHHHHHHHH-HhCcCc--eEEEecccchhhhhh---ccccceeeeeee--c-------C--CCceeeccccCCcCcc
Confidence 444444444443 223332 247999999999886 334567776442 1 0 1256788999999999
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
++.|++++...| +..+ +..++.|++|+|+|||.+||.+.-.. -.....+...+...||......
T Consensus 227 ~svDvaV~CLSL--Mgtn--~~df~kEa~RiLk~gG~l~IAEv~SR-f~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 227 ESVDVAVFCLSL--MGTN--LADFIKEANRILKPGGLLYIAEVKSR-FSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred CcccEEEeeHhh--hccc--HHHHHHHHHHHhccCceEEEEehhhh-cccHHHHHHHHHHcCCeeeehh
Confidence 999999986555 2344 88999999999999999999764421 1233568889999999876544
No 112
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.86 E-value=2.6e-08 Score=79.66 Aligned_cols=94 Identities=22% Similarity=0.323 Sum_probs=72.2
Q ss_pred EEEEcCCccHHHHHHHH-cCCEEEEEecCCChhHHHHHH---hc---CCeeEEEcccccCCC-CCCceeEEEEccchhhc
Q 043503 280 GLDIGGGTGTFAARMRE-RNVTIITTSLNLDGPFNSFIA---SR---GLISMHISVSQRLPF-FENTLDIVHSMHVLSNW 351 (430)
Q Consensus 280 VLDIGcGtG~~a~~La~-~g~~Vv~vdiD~s~~~le~a~---~r---g~i~~~~~d~~~lpf-~d~sfDlV~~~~~L~~~ 351 (430)
++|+|||+|.++..+++ .+.+++++ |.++...+.+. .. ..+.++..+...... ..++||+|++..++.++
T Consensus 2 ildig~G~G~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 2 VLDLGCGTGALALALASGPGARVTGV--DISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred eEEEcCCccHHHHHHhcCCCCEEEEE--eCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 69999999999999998 47788888 55566665554 11 227778888766553 56789999998887442
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
......++..+.+.|+|||.+++.
T Consensus 80 --~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 --VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 234788999999999999999875
No 113
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.86 E-value=3.8e-08 Score=94.58 Aligned_cols=99 Identities=13% Similarity=0.017 Sum_probs=81.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc------------------CCeeEEEcccccCCCC---C
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR------------------GLISMHISVSQRLPFF---E 336 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r------------------g~i~~~~~d~~~lpf~---d 336 (430)
.+||+.|||.|.-+..|+++|++|+|+ |+|+..++.+.++ +.+.++++|+..++.. .
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~V~Gv--DlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVKVIGI--ELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCcEEEE--ecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 456999999999999999999999999 7777777665331 2378999999888632 2
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
+.||+|.-..++.+ ++.+....+...+.++|+|||.+++..+
T Consensus 123 ~~fD~VyDra~~~A-lpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 123 PVFDIWYDRGAYIA-LPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CCcCeeeeehhHhc-CCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 68999999888865 5666899999999999999999887654
No 114
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.85 E-value=3.5e-08 Score=92.17 Aligned_cols=117 Identities=17% Similarity=0.132 Sum_probs=76.5
Q ss_pred ccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C--CeeEEEccccc-CCCCCCceeEEEEccc
Q 043503 277 IRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQR-LPFFENTLDIVHSMHV 347 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~-lpf~d~sfDlV~~~~~ 347 (430)
..+|||+|||+|.++..+++. +.+|+++ |.++.+++.++++ + .+.++.+|+.. ++.....+|.|+...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~v--D~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~- 117 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAI--ERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG- 117 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEE--eCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-
Confidence 346799999999999999865 5788888 6667887776643 3 37788887643 222223456665421
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHH---cCCEEEEEE
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDR---IGFKKLRWN 405 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~---~Gfk~l~~~ 405 (430)
.. ....++.++.++|+|||+|++.... .+......+.++. .++.+++..
T Consensus 118 ----~~--~~~~~l~~~~~~LkpgG~li~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (196)
T PRK07402 118 ----GR--PIKEILQAVWQYLKPGGRLVATASS---LEGLYAISEGLAQLQARNIEVVQAA 169 (196)
T ss_pred ----Cc--CHHHHHHHHHHhcCCCeEEEEEeec---HHHHHHHHHHHHhcCCCCceEEEEE
Confidence 11 2678999999999999999987532 1112223344444 456666543
No 115
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.85 E-value=2.2e-08 Score=100.06 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=78.7
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc------CC-eeEEEccccc-CC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR------GL-ISMHISVSQR-LP 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r------g~-i~~~~~d~~~-lp 333 (430)
.+.+...++. ..+|||+|||+|..+..+++. +.+++++ |+|+.|++.+.++ +. +.++++|+.. ++
T Consensus 54 ~~~ia~~~~~--~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~i--DiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~ 129 (301)
T TIGR03438 54 ADEIAAATGA--GCELVELGSGSSRKTRLLLDALRQPARYVPI--DISADALKESAAALAADYPQLEVHGICADFTQPLA 129 (301)
T ss_pred HHHHHHhhCC--CCeEEecCCCcchhHHHHHHhhccCCeEEEE--ECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh
Confidence 3444444432 235799999999999999987 5788888 7889998887654 12 5667888765 44
Q ss_pred CCCC----ceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecccc
Q 043503 334 FFEN----TLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF 382 (430)
Q Consensus 334 f~d~----sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~ 382 (430)
++.. ...++++...+.++ +.+....+|+++.++|+|||.|++.--.+.
T Consensus 130 ~~~~~~~~~~~~~~~gs~~~~~-~~~e~~~~L~~i~~~L~pgG~~lig~d~~~ 181 (301)
T TIGR03438 130 LPPEPAAGRRLGFFPGSTIGNF-TPEEAVAFLRRIRQLLGPGGGLLIGVDLVK 181 (301)
T ss_pred hhcccccCCeEEEEecccccCC-CHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 4332 23445555566554 444578899999999999999998654443
No 116
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.84 E-value=4.9e-08 Score=104.33 Aligned_cols=120 Identities=18% Similarity=0.197 Sum_probs=84.1
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.++..++.. +.+|+++ |+++.+++.|+++ + .+.++.+|+.. ++++++||+|+++...
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~av--Dis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIAT--DISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEE--ECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 46899999999999998875 6788988 6677777777654 3 26778887533 2345689999995322
Q ss_pred hh-------------cCC--------c--hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEE
Q 043503 349 SN-------------WIP--------D--SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 349 ~~-------------~~~--------d--~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
.. +.| + +....++.++.+.|+|||.+++.. +....+.+.+++.+.||+.+..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi----g~~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI----GFKQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE----CCchHHHHHHHHHhcCCCceEE
Confidence 11 001 1 123457888999999999998852 2334567788888999976543
No 117
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.83 E-value=2.5e-08 Score=94.02 Aligned_cols=124 Identities=23% Similarity=0.274 Sum_probs=88.4
Q ss_pred EEEEEcCCccHHHHHHHHc--CCEEEEEecCCCh-hH-HHHHHhcCC---eeEEEcccccC--CC------CCCceeEEE
Q 043503 279 IGLDIGGGTGTFAARMRER--NVTIITTSLNLDG-PF-NSFIASRGL---ISMHISVSQRL--PF------FENTLDIVH 343 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~-~~-le~a~~rg~---i~~~~~d~~~l--pf------~d~sfDlV~ 343 (430)
.||+||+|||..+.++++. ..+....|+|... .. .+.+.+.+. ..-+..|...- +. ..++||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 5799999999999999998 6677777555433 12 233444443 22233343322 22 356899999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC-----------------------cHHHHHHHHHHcCCE
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-----------------------LNETYVPMLDRIGFK 400 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-----------------------~~~~~~~ll~~~Gfk 400 (430)
|.+++ |.++....+.++..+.++|+|||.|++...|..+.. ..+++.++..+.|++
T Consensus 108 ~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~ 186 (204)
T PF06080_consen 108 CINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLE 186 (204)
T ss_pred ehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCc
Confidence 99999 778877789999999999999999999888764432 234577788888888
Q ss_pred EEE
Q 043503 401 KLR 403 (430)
Q Consensus 401 ~l~ 403 (430)
..+
T Consensus 187 l~~ 189 (204)
T PF06080_consen 187 LEE 189 (204)
T ss_pred cCc
Confidence 655
No 118
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.80 E-value=5.9e-08 Score=91.67 Aligned_cols=90 Identities=18% Similarity=0.120 Sum_probs=66.6
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+|||+|||+|.++..+++...+|+++ |.++.+.+.++++ +. +.+..+|........++||+|++.....+
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~~v~~v--d~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~- 156 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVRRVFSV--ERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPE- 156 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhCEEEEE--eCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchh-
Confidence 456999999999999888876688888 6668887777654 33 78888886442223478999999655422
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+...+.+.|+|||.+++..
T Consensus 157 --------~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 157 --------IPRALLEQLKEGGILVAPV 175 (212)
T ss_pred --------hhHHHHHhcCCCcEEEEEE
Confidence 2346788999999998864
No 119
>PHA03411 putative methyltransferase; Provisional
Probab=98.79 E-value=6.1e-08 Score=95.39 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=89.1
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-CCeeEEEcccccCCCCCCceeEEEEccchhhcCCc
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d 354 (430)
.+|||+|||+|.++..++.+ +.+|+++ |+++.|++.++++ ..+.++.+|+..+. .+++||+|+++..+.+....
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gV--Disp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCV--ELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTT 142 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCch
Confidence 35699999999999988776 5788988 6678888888775 34788899987765 35689999998777542211
Q ss_pred h---------------h--HHHHHHHHHHhccCCcEEEEee---ccccCcCcHHHHHHHHHHcCCEEE
Q 043503 355 S---------------M--LEFTLYDIYRLLRPGGIFWLDR---FFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 355 ~---------------~--l~~~L~ei~RvLrPGG~lvl~~---f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
+ . ...++....++|+|+|.+++.. .+-+.+-..++|.++++..||...
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEec
Confidence 0 0 3567888899999999876641 111222245789999999999743
No 120
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.78 E-value=1.2e-07 Score=99.15 Aligned_cols=141 Identities=14% Similarity=0.190 Sum_probs=91.3
Q ss_pred CCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccc
Q 043503 258 NGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQ 330 (430)
Q Consensus 258 ~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~ 330 (430)
+......+...+...++ .+|||+|||+|..+..++++ +.+|+++ |.++.+++.++++ |. +.++.+|+.
T Consensus 229 Qd~~s~~~~~~l~~~~g---~~VLDlgaG~G~~t~~la~~~~~~~v~a~--D~s~~~l~~~~~n~~~~g~~~~~~~~D~~ 303 (427)
T PRK10901 229 QDAAAQLAATLLAPQNG---ERVLDACAAPGGKTAHILELAPQAQVVAL--DIDAQRLERVRENLQRLGLKATVIVGDAR 303 (427)
T ss_pred ECHHHHHHHHHcCCCCC---CEEEEeCCCCChHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHHHHHcCCCeEEEEcCcc
Confidence 33333334445544444 34699999999999999987 3588888 6677777666544 43 678888887
Q ss_pred cCC--CCCCceeEEEEccc------hh-----hcCCc--------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHH
Q 043503 331 RLP--FFENTLDIVHSMHV------LS-----NWIPD--------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNET 389 (430)
Q Consensus 331 ~lp--f~d~sfDlV~~~~~------L~-----~~~~d--------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~ 389 (430)
.++ +.+++||.|++... +. .|... .....++..+.++|||||.+++++......+-...
T Consensus 304 ~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~ 383 (427)
T PRK10901 304 DPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQ 383 (427)
T ss_pred cchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHH
Confidence 654 34678999995321 10 01111 11347899999999999999988743333333355
Q ss_pred HHHHHHHc-CCEEEE
Q 043503 390 YVPMLDRI-GFKKLR 403 (430)
Q Consensus 390 ~~~ll~~~-Gfk~l~ 403 (430)
+...+++. +|+.+.
T Consensus 384 v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 384 IKAFLARHPDAELLD 398 (427)
T ss_pred HHHHHHhCCCCEEec
Confidence 66666664 576554
No 121
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.77 E-value=7.4e-08 Score=101.29 Aligned_cols=135 Identities=15% Similarity=0.132 Sum_probs=93.6
Q ss_pred hHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEccccc----
Q 043503 262 DYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQR---- 331 (430)
Q Consensus 262 ~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~---- 331 (430)
...++.++..+......+|||+|||+|.++..+++.+.+|+++ |.++.|++.|+++ +. +.++.+|+..
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gv--D~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~ 360 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGV--EGVEAMVERARENARRNGLDNVTFYHANLEEDFTD 360 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEE--eCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh
Confidence 3344555554433333467999999999999999988889988 7778888777654 33 7889998754
Q ss_pred CCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE-eccc
Q 043503 332 LPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN-VGMK 409 (430)
Q Consensus 332 lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~-~~~k 409 (430)
+++.+++||+|++...-. .....+..+.+ ++|++.+|++ |....+.+++.. +.+.||++.+.. +++.
T Consensus 361 ~~~~~~~fD~Vi~dPPr~------g~~~~~~~l~~-~~~~~ivyvS---Cnp~tlaRDl~~-L~~~gY~l~~i~~~DmF 428 (443)
T PRK13168 361 QPWALGGFDKVLLDPPRA------GAAEVMQALAK-LGPKRIVYVS---CNPATLARDAGV-LVEAGYRLKRAGMLDMF 428 (443)
T ss_pred hhhhcCCCCEEEECcCCc------ChHHHHHHHHh-cCCCeEEEEE---eChHHhhccHHH-HhhCCcEEEEEEEeccC
Confidence 234567899999953331 13345555555 6999999996 666666666664 456799988876 4444
No 122
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=2.4e-07 Score=91.94 Aligned_cols=139 Identities=20% Similarity=0.314 Sum_probs=88.8
Q ss_pred eecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHh----cCCee--EEE
Q 043503 255 LIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIAS----RGLIS--MHI 326 (430)
Q Consensus 255 ~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~----rg~i~--~~~ 326 (430)
..+.......++.++........ +|||+|||+|.+++.++.+. .+|+++ |+++..++.|++ +|... ++.
T Consensus 90 liPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~--Dis~~Al~~A~~Na~~~~l~~~~~~~ 166 (280)
T COG2890 90 LIPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAV--DISPDALALARENAERNGLVRVLVVQ 166 (280)
T ss_pred eecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEE--ECCHHHHHHHHHHHHHcCCccEEEEe
Confidence 34555555556665422222221 57999999999999999984 499999 555666655544 35432 333
Q ss_pred ccc-ccCCCCCCceeEEEEccchhhcC-----C---------------c--hhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 327 SVS-QRLPFFENTLDIVHSMHVLSNWI-----P---------------D--SMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 327 ~d~-~~lpf~d~sfDlV~~~~~L~~~~-----~---------------d--~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
+|. ..+ .++||+|+|+.....-. + + +....++.++.+.|+|||.+++.. +
T Consensus 167 ~dlf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~----g 239 (280)
T COG2890 167 SDLFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI----G 239 (280)
T ss_pred eeccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE----C
Confidence 332 323 24899999964331110 0 1 145678889999999999998853 2
Q ss_pred cCcHHHHHHHHHHcC-CEEEE
Q 043503 384 SQLNETYVPMLDRIG-FKKLR 403 (430)
Q Consensus 384 ~~~~~~~~~ll~~~G-fk~l~ 403 (430)
....+.+.+++.+.| |..+.
T Consensus 240 ~~q~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 240 LTQGEAVKALFEDTGFFEIVE 260 (280)
T ss_pred CCcHHHHHHHHHhcCCceEEE
Confidence 234577889999999 55443
No 123
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.74 E-value=1.7e-08 Score=95.91 Aligned_cols=136 Identities=23% Similarity=0.302 Sum_probs=101.4
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc---CC-eeEEEcccccCCCCCCce
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR---GL-ISMHISVSQRLPFFENTL 339 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r---g~-i~~~~~d~~~lpf~d~sf 339 (430)
.|++...++ ....++|||||.|.+...+...++ +++-+ |.|..|++.++.- ++ ....++|-+.++|.++++
T Consensus 63 aDrvfD~kk--~fp~a~diGcs~G~v~rhl~~e~vekli~~--DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~ 138 (325)
T KOG2940|consen 63 ADRVFDCKK--SFPTAFDIGCSLGAVKRHLRGEGVEKLIMM--DTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSV 138 (325)
T ss_pred HHHHHHHhh--hCcceeecccchhhhhHHHHhcchhheeee--ecchHHHHHhhccCCCceEEEEEecchhcccccccch
Confidence 344444333 234579999999999999998876 44444 7888998887654 33 566788999999999999
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecccc-----------------------CcC--cHHHHHHHH
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF-----------------------GSQ--LNETYVPML 394 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~-----------------------~~~--~~~~~~~ll 394 (430)
|+|+++..+ ||+.+ +..-+.++...|||+|.|+-+-|... -+. ..+++-.++
T Consensus 139 DLiisSlsl-HW~Nd--LPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL 215 (325)
T KOG2940|consen 139 DLIISSLSL-HWTND--LPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLL 215 (325)
T ss_pred hhhhhhhhh-hhhcc--CchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHH
Confidence 999999988 89988 88899999999999999975432210 000 124577789
Q ss_pred HHcCCEEEEEEec
Q 043503 395 DRIGFKKLRWNVG 407 (430)
Q Consensus 395 ~~~Gfk~l~~~~~ 407 (430)
.++||..+...+.
T Consensus 216 ~rAGF~m~tvDtD 228 (325)
T KOG2940|consen 216 TRAGFSMLTVDTD 228 (325)
T ss_pred hhcCcccceeccc
Confidence 9999987765544
No 124
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.74 E-value=1.7e-07 Score=98.41 Aligned_cols=132 Identities=19% Similarity=0.204 Sum_probs=90.4
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCC--
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLP-- 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lp-- 333 (430)
+..++...++ .+|||+|||+|..+..+++. ..+|+++ |.++.+++.++++ |. +.++.+|+..++
T Consensus 244 ~~~~l~~~~g---~~VLDl~ag~G~kt~~la~~~~~~g~v~a~--D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 244 VAPLLDPQPG---EVILDACAAPGGKTTHIAELMGDQGEIWAV--DRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL 318 (434)
T ss_pred HHHHhCCCCc---CEEEEeCCCCchhHHHHHHHhCCCceEEEE--cCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc
Confidence 4444444443 34699999999999999886 3578888 6678777666544 43 788888887765
Q ss_pred --CCCCceeEEEEc------cchhhcCCc-------h-------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHH
Q 043503 334 --FFENTLDIVHSM------HVLSNWIPD-------S-------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYV 391 (430)
Q Consensus 334 --f~d~sfDlV~~~------~~L~~~~~d-------~-------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~ 391 (430)
+.+++||.|++. .++.+ .++ + ....+|.++.++|||||+++.++-....++-...+.
T Consensus 319 ~~~~~~~fD~Vl~DaPCSg~G~~~r-~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~ 397 (434)
T PRK14901 319 KPQWRGYFDRILLDAPCSGLGTLHR-HPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIE 397 (434)
T ss_pred cccccccCCEEEEeCCCCccccccc-CcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHH
Confidence 446789999972 12211 121 0 135789999999999999998875544444445677
Q ss_pred HHHHHc-CCEEE
Q 043503 392 PMLDRI-GFKKL 402 (430)
Q Consensus 392 ~ll~~~-Gfk~l 402 (430)
..+++. +|+..
T Consensus 398 ~~l~~~~~~~~~ 409 (434)
T PRK14901 398 QFLARHPDWKLE 409 (434)
T ss_pred HHHHhCCCcEec
Confidence 777765 57644
No 125
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.73 E-value=7.2e-08 Score=88.07 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=69.4
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCCCceeEEEEccchhhcCC
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~ 353 (430)
.++||+|||+|.++..+++++.+++++ |.++.+.+.++++ +.+.++.+|+..+++++..||.|+++..+ + +.
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~~~v~~v--E~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py-~-~~ 90 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERAARVTAI--EIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPY-N-IS 90 (169)
T ss_pred CEEEEECCCccHHHHHHHhcCCeEEEE--ECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCc-c-cH
Confidence 457999999999999999998899998 5557777777665 34789999999988877789999996544 3 22
Q ss_pred chhHHHHHHHHHHhccCCcEEEEee
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+..++.+. .+.++|.+++-.
T Consensus 91 ~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 91 TPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred HHHHHHHHhcC--CCcceEEEEEEH
Confidence 22233333321 245788887754
No 126
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.72 E-value=4.4e-07 Score=84.25 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=84.9
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC--eeEEEccccc-CCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQR-LPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~-lpf~d~sfDlV~~~~~L 348 (430)
.+++|||||||+.+..++.. ..+|+++ |-++.+++..+++ |. +.++.+++-. ++-.+ ++|.|+....
T Consensus 36 ~~l~DIGaGtGsi~iE~a~~~p~~~v~AI--e~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg- 111 (187)
T COG2242 36 DRLWDIGAGTGSITIEWALAGPSGRVIAI--ERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGG- 111 (187)
T ss_pred CEEEEeCCCccHHHHHHHHhCCCceEEEE--ecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECCC-
Confidence 45699999999999999944 6788888 6556666555444 43 6777887643 33222 7999999654
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCC-EEEEEEeccc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGF-KKLRWNVGMK 409 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gf-k~l~~~~~~k 409 (430)
.+ ++.+|..+...|||||.++..-.. -+......+.+++.|+ .+++......
T Consensus 112 ~~------i~~ile~~~~~l~~ggrlV~nait---lE~~~~a~~~~~~~g~~ei~~v~is~~ 164 (187)
T COG2242 112 GN------IEEILEAAWERLKPGGRLVANAIT---LETLAKALEALEQLGGREIVQVQISRG 164 (187)
T ss_pred CC------HHHHHHHHHHHcCcCCeEEEEeec---HHHHHHHHHHHHHcCCceEEEEEeecc
Confidence 22 778999999999999999986322 2223456778899999 7766654443
No 127
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.70 E-value=1.8e-07 Score=98.53 Aligned_cols=132 Identities=20% Similarity=0.149 Sum_probs=86.6
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFF 335 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~ 335 (430)
...++...++ .+|||+|||+|..+..+++. +.+|+++ |+++.+++.++++ |. +.++.+|+..++ +
T Consensus 242 ~~~~l~~~~g---~~VLDlgaG~G~kt~~la~~~~~~~~V~av--D~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~ 315 (445)
T PRK14904 242 ACLLLNPQPG---STVLDLCAAPGGKSTFMAELMQNRGQITAV--DRYPQKLEKIRSHASALGITIIETIEGDARSFS-P 315 (445)
T ss_pred HHHhcCCCCC---CEEEEECCCCCHHHHHHHHHhCCCcEEEEE--ECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-c
Confidence 3344444443 34699999999999888875 4588888 7778887766544 43 788888887765 5
Q ss_pred CCceeEEEEc------cchhh-----cCC-ch-------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHH
Q 043503 336 ENTLDIVHSM------HVLSN-----WIP-DS-------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDR 396 (430)
Q Consensus 336 d~sfDlV~~~------~~L~~-----~~~-d~-------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~ 396 (430)
+++||+|++- ..+.. |.. .+ ....+|.++.++|||||++++++.....++-...+...+++
T Consensus 316 ~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 316 EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 6789999962 11110 110 01 13468999999999999999987443332223445566666
Q ss_pred c-CCEEE
Q 043503 397 I-GFKKL 402 (430)
Q Consensus 397 ~-Gfk~l 402 (430)
. +|+..
T Consensus 396 ~~~~~~~ 402 (445)
T PRK14904 396 HPEFSAE 402 (445)
T ss_pred CCCCEEe
Confidence 5 56654
No 128
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.66 E-value=2.1e-07 Score=91.42 Aligned_cols=138 Identities=11% Similarity=0.148 Sum_probs=87.0
Q ss_pred CCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcc
Q 043503 258 NGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL--ISMHISV 328 (430)
Q Consensus 258 ~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d 328 (430)
+..........+...++. +|||+|||+|..+..+++. ...|+++ |.++.+++.++++ |. +.++..|
T Consensus 56 qd~~s~~~~~~l~~~~g~---~VLDl~ag~G~kt~~la~~~~~~g~v~a~--D~~~~~l~~~~~n~~~~g~~~v~~~~~D 130 (264)
T TIGR00446 56 QEASSMIPPLALEPDPPE---RVLDMAAAPGGKTTQISALMKNEGAIVAN--EFSKSRTKVLIANINRCGVLNVAVTNFD 130 (264)
T ss_pred ECHHHHHHHHHhCCCCcC---EEEEECCCchHHHHHHHHHcCCCCEEEEE--cCCHHHHHHHHHHHHHcCCCcEEEecCC
Confidence 333333344455444443 4699999999999998876 3578888 7778777666543 43 6778888
Q ss_pred cccCCCCCCceeEEEEcc------chhh-------cCCc------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHH
Q 043503 329 SQRLPFFENTLDIVHSMH------VLSN-------WIPD------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNET 389 (430)
Q Consensus 329 ~~~lpf~d~sfDlV~~~~------~L~~-------~~~d------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~ 389 (430)
+..++...+.||.|++.- ++.+ |.++ .....+|..+.+.|||||+++.++-....++-...
T Consensus 131 ~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~v 210 (264)
T TIGR00446 131 GRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAV 210 (264)
T ss_pred HHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHH
Confidence 877665566799999721 1110 1111 02346999999999999999987633222222334
Q ss_pred HHHHHHHc-CCE
Q 043503 390 YVPMLDRI-GFK 400 (430)
Q Consensus 390 ~~~ll~~~-Gfk 400 (430)
+..++++. +|.
T Consensus 211 v~~~l~~~~~~~ 222 (264)
T TIGR00446 211 VDYLLEKRPDVV 222 (264)
T ss_pred HHHHHHhCCCcE
Confidence 55555553 444
No 129
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.65 E-value=2.6e-07 Score=92.94 Aligned_cols=118 Identities=15% Similarity=0.186 Sum_probs=84.6
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCC-CCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPF-FENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf-~d~sfDlV~~~~~L~~ 350 (430)
.+|||+|||+|.++..+++++.+|+++ |.++.+++.|+++ |. +.++.+|+..+.. .+++||+|++...-.
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~~V~gv--D~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~- 251 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGMQLTGI--EISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR- 251 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEEEE--eCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC-
Confidence 457999999999999999999999998 6678887766544 43 7899999876542 345799999963321
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE-eccc
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN-VGMK 409 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~-~~~k 409 (430)
.+...+.++...++|++.++++ |....+.++...+ .||++.+.. +.+.
T Consensus 252 -----G~~~~~~~~l~~~~~~~ivyvs---c~p~t~~rd~~~l---~~y~~~~~~~~DmF 300 (315)
T PRK03522 252 -----GIGKELCDYLSQMAPRFILYSS---CNAQTMAKDLAHL---PGYRIERVQLFDMF 300 (315)
T ss_pred -----CccHHHHHHHHHcCCCeEEEEE---CCcccchhHHhhc---cCcEEEEEEEeccC
Confidence 1222333444557889888886 7777677777665 589988766 4443
No 130
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.64 E-value=5.2e-07 Score=94.43 Aligned_cols=133 Identities=16% Similarity=0.146 Sum_probs=85.4
Q ss_pred hHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC-eeE--EEcccccC
Q 043503 262 DYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL-ISM--HISVSQRL 332 (430)
Q Consensus 262 ~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~-i~~--~~~d~~~l 332 (430)
...+...+...++ .+|||+|||+|..+..+++. +.+|+++ |+++.+++.++++ |. +.+ ..+|....
T Consensus 227 s~~~~~~L~~~~g---~~VLDlcag~G~kt~~la~~~~~~~v~a~--D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~ 301 (426)
T TIGR00563 227 AQWVATWLAPQNE---ETILDACAAPGGKTTHILELAPQAQVVAL--DIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP 301 (426)
T ss_pred HHHHHHHhCCCCC---CeEEEeCCCccHHHHHHHHHcCCCeEEEE--eCCHHHHHHHHHHHHHcCCCeEEEEeccccccc
Confidence 3344555554444 45699999999999999886 3688888 6677777666544 44 233 44555444
Q ss_pred CC--CCCceeEEEEc------cchhhcCCch--------------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHH
Q 043503 333 PF--FENTLDIVHSM------HVLSNWIPDS--------------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETY 390 (430)
Q Consensus 333 pf--~d~sfDlV~~~------~~L~~~~~d~--------------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~ 390 (430)
++ ++++||.|++. .++++ .++- ....+|.++.++|||||.+++++......+-...+
T Consensus 302 ~~~~~~~~fD~VllDaPcSg~G~~~~-~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v 380 (426)
T TIGR00563 302 SQWAENEQFDRILLDAPCSATGVIRR-HPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQI 380 (426)
T ss_pred cccccccccCEEEEcCCCCCCccccc-CcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHH
Confidence 43 46789999962 22322 2220 13579999999999999999987443333333455
Q ss_pred HHHHHHc-CCE
Q 043503 391 VPMLDRI-GFK 400 (430)
Q Consensus 391 ~~ll~~~-Gfk 400 (430)
...+++. +|.
T Consensus 381 ~~~l~~~~~~~ 391 (426)
T TIGR00563 381 KAFLQEHPDFP 391 (426)
T ss_pred HHHHHhCCCCe
Confidence 5666665 454
No 131
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.62 E-value=4.1e-07 Score=95.71 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=87.6
Q ss_pred hHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccC
Q 043503 262 DYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRL 332 (430)
Q Consensus 262 ~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~l 332 (430)
...+...+...++ .+|||+|||+|..+..+++. +.+|+++ |+++.+++.++++ |. +.++.+|+..+
T Consensus 239 s~lv~~~l~~~~g---~~VLDlgaG~G~~t~~la~~~~~~~~v~av--Di~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~ 313 (444)
T PRK14902 239 SMLVAPALDPKGG---DTVLDACAAPGGKTTHIAELLKNTGKVVAL--DIHEHKLKLIEENAKRLGLTNIETKALDARKV 313 (444)
T ss_pred HHHHHHHhCCCCC---CEEEEeCCCCCHHHHHHHHHhCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCeEEEEeCCcccc
Confidence 3334444444443 45699999999999999886 4688888 6667777666543 43 78888888765
Q ss_pred C-CCCCceeEEEEccc------hhh-----cCC-ch-------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHH
Q 043503 333 P-FFENTLDIVHSMHV------LSN-----WIP-DS-------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVP 392 (430)
Q Consensus 333 p-f~d~sfDlV~~~~~------L~~-----~~~-d~-------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ 392 (430)
+ ...++||+|++... +.+ |.. .. ....+|..+.++|||||.++.++-....++-...+..
T Consensus 314 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~ 393 (444)
T PRK14902 314 HEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEA 393 (444)
T ss_pred cchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHH
Confidence 3 11278999997421 110 000 00 1246899999999999999976532222222345556
Q ss_pred HHHHc-CCEEEEE
Q 043503 393 MLDRI-GFKKLRW 404 (430)
Q Consensus 393 ll~~~-Gfk~l~~ 404 (430)
.+++. +|+.+..
T Consensus 394 ~l~~~~~~~~~~~ 406 (444)
T PRK14902 394 FLEEHPEFELVPL 406 (444)
T ss_pred HHHhCCCcEEecc
Confidence 66665 4776654
No 132
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.62 E-value=9.2e-08 Score=94.90 Aligned_cols=98 Identities=18% Similarity=0.244 Sum_probs=74.1
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc-----CC-------eeEEEcccc------cCCCCCCc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR-----GL-------ISMHISVSQ------RLPFFENT 338 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r-----g~-------i~~~~~d~~------~lpf~d~s 338 (430)
+.++|+|||.|.-++..-..|. .++++ |+++..++.|+.| +. +.|+.+|.. .+++.+.+
T Consensus 119 ~~~~~LgCGKGGDLlKw~kAgI~~~igi--DIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 119 DDVLDLGCGKGGDLLKWDKAGIGEYIGI--DIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccceeccCCcccHhHhhhhcccceEee--ehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 3459999999998888877754 56777 6677777777665 11 567788753 34456667
Q ss_pred eeEEEEccchhh-cCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 339 LDIVHSMHVLSN-WIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 339 fDlV~~~~~L~~-~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
||+|-|.+++|. |...+..+.+|.++.+.|||||+|+-+
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 999999999943 235567888999999999999999765
No 133
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.62 E-value=4.4e-07 Score=95.22 Aligned_cols=137 Identities=15% Similarity=0.207 Sum_probs=90.9
Q ss_pred hHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccC
Q 043503 262 DYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRL 332 (430)
Q Consensus 262 ~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~l 332 (430)
...+..++...++. +|||+|||+|..+..+++. +.+|+++ |+++.+++.++++ |. +.+..+|+..+
T Consensus 226 s~~~~~~l~~~~g~---~VLD~cagpGgkt~~la~~~~~~g~V~a~--Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l 300 (431)
T PRK14903 226 SQIVPLLMELEPGL---RVLDTCAAPGGKTTAIAELMKDQGKILAV--DISREKIQLVEKHAKRLKLSSIEIKIADAERL 300 (431)
T ss_pred HHHHHHHhCCCCCC---EEEEeCCCccHHHHHHHHHcCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCeEEEEECchhhh
Confidence 33344555544443 4699999999999988876 5688888 6678887766544 44 67888888877
Q ss_pred C-CCCCceeEEEEcc-c--hhhc--CCc--------------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHH
Q 043503 333 P-FFENTLDIVHSMH-V--LSNW--IPD--------------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVP 392 (430)
Q Consensus 333 p-f~d~sfDlV~~~~-~--L~~~--~~d--------------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ 392 (430)
+ +.+++||.|++.- | +..+ .++ .....+|.++.+.|||||.+++++-....++-.+.+..
T Consensus 301 ~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~ 380 (431)
T PRK14903 301 TEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKR 380 (431)
T ss_pred hhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHH
Confidence 6 4567899999721 1 1110 111 02356799999999999999988744333334455666
Q ss_pred HHHH-cCCEEEE
Q 043503 393 MLDR-IGFKKLR 403 (430)
Q Consensus 393 ll~~-~Gfk~l~ 403 (430)
.+++ -+|..+.
T Consensus 381 fl~~~~~~~~~~ 392 (431)
T PRK14903 381 FVYEQKDAEVID 392 (431)
T ss_pred HHHhCCCcEEec
Confidence 6654 4576544
No 134
>PRK04457 spermidine synthase; Provisional
Probab=98.61 E-value=2.9e-07 Score=90.37 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=72.2
Q ss_pred ccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-------CCeeEEEcccccC-CCCCCceeEEEEcc
Q 043503 277 IRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-------GLISMHISVSQRL-PFFENTLDIVHSMH 346 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~~~l-pf~d~sfDlV~~~~ 346 (430)
.++|||||||+|.++..+++. +.+++++ |+++.+++.|++. ..+.++++|+..+ .-..++||+|++..
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~V--Eidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAV--EINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEE--ECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 456799999999999999877 5788888 6668888888764 2378888886542 22246899999842
Q ss_pred chhhcCCc-hhHHHHHHHHHHhccCCcEEEEee
Q 043503 347 VLSNWIPD-SMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 347 ~L~~~~~d-~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.-....+. -....++.++.++|+|||.+++..
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 11111111 123689999999999999999864
No 135
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.61 E-value=3.5e-07 Score=92.37 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=66.1
Q ss_pred cEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.+++.+++. + ..|+++ |.++.+++.|+++ |. +.++.+|+...+...++||+|++....
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgV--Dis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~ 159 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSV--EYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGV 159 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCch
Confidence 45699999999999999986 3 358877 6678888776653 43 677888876655555789999996544
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.+ ....+.+.|+|||.+++.
T Consensus 160 ~~---------ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 160 DE---------VPETWFTQLKEGGRVIVP 179 (322)
T ss_pred HH---------hHHHHHHhcCCCCEEEEE
Confidence 32 233567899999998874
No 136
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.59 E-value=3e-07 Score=86.58 Aligned_cols=117 Identities=18% Similarity=0.213 Sum_probs=70.8
Q ss_pred CCchhHHHHHHHc-cC----CCCCccEEEEEcCCcc----HHHHHHHHc-------CCEEEEEecCCChhHHHHHHhc--
Q 043503 258 NGKLDYGIDQVLS-MK----PLGTIRIGLDIGGGTG----TFAARMRER-------NVTIITTSLNLDGPFNSFIASR-- 319 (430)
Q Consensus 258 ~~~~~~~id~lL~-~~----p~~~ir~VLDIGcGtG----~~a~~La~~-------g~~Vv~vdiD~s~~~le~a~~r-- 319 (430)
....+...+.++. .+ +...+ +|+..||++| ++|..+.+. .++|+++ |++..+++.|++-
T Consensus 9 ~~~f~~l~~~vlp~~~~~~~~~~~l-rIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~at--Di~~~~L~~Ar~G~Y 85 (196)
T PF01739_consen 9 PEQFEALRDEVLPPLLARARPGRPL-RIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILAT--DISPSALEKARAGIY 85 (196)
T ss_dssp TTHHHHHHHHHH-------CS-S-E-EEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEE--ES-HHHHHHHHHTEE
T ss_pred HHHHHHHHHHHHHhhccccCCCCCe-EEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEE--ECCHHHHHHHHhCCC
Confidence 3344555555552 22 22334 5599999999 566666662 2688888 5557777776421
Q ss_pred --------------------------------CCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHh
Q 043503 320 --------------------------------GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRL 367 (430)
Q Consensus 320 --------------------------------g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~Rv 367 (430)
..+.|...+.-..+.+.+.||+|+|.+++..+ +.+....++..+++.
T Consensus 86 ~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~~~ 164 (196)
T PF01739_consen 86 PERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLHRS 164 (196)
T ss_dssp EGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHGGG
T ss_pred CHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHHHHHHHH
Confidence 22777777765533456789999999999764 555688999999999
Q ss_pred ccCCcEEEEee
Q 043503 368 LRPGGIFWLDR 378 (430)
Q Consensus 368 LrPGG~lvl~~ 378 (430)
|+|||+|++.+
T Consensus 165 L~pgG~L~lG~ 175 (196)
T PF01739_consen 165 LKPGGYLFLGH 175 (196)
T ss_dssp EEEEEEEEE-T
T ss_pred cCCCCEEEEec
Confidence 99999999953
No 137
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.56 E-value=1.6e-07 Score=95.25 Aligned_cols=120 Identities=14% Similarity=0.076 Sum_probs=77.7
Q ss_pred cCCchhHHHHHHHccCC-CCCccEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHhcC--------------
Q 043503 257 DNGKLDYGIDQVLSMKP-LGTIRIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIASRG-------------- 320 (430)
Q Consensus 257 ~~~~~~~~id~lL~~~p-~~~ir~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~rg-------------- 320 (430)
.+......|........ ......|||+|||-|.-.......+ ..++|+ |++...++.|++|-
T Consensus 42 NNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~--Dis~~si~ea~~Ry~~~~~~~~~~~~~~ 119 (331)
T PF03291_consen 42 NNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGI--DISEESIEEARERYKQLKKRNNSKQYRF 119 (331)
T ss_dssp HHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEE--ES-HHHHHHHHHHHHHHHTSTT-HTSEE
T ss_pred hHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEE--eCCHHHHHHHHHHHHHhccccccccccc
Confidence 34444455555554322 1234568999999998777776664 477788 66777777776652
Q ss_pred -C-eeEEEcccccCC----CCC--CceeEEEEccchhhcC-CchhHHHHHHHHHHhccCCcEEEEee
Q 043503 321 -L-ISMHISVSQRLP----FFE--NTLDIVHSMHVLSNWI-PDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 321 -~-i~~~~~d~~~lp----f~d--~sfDlV~~~~~L~~~~-~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
. ..++.+|...-. +++ ..||+|-|++++|... .++..+.+|..+...|+|||+|+.+.
T Consensus 120 ~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 120 DFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp CCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1 455677654221 333 5999999999996543 45567779999999999999998753
No 138
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=5.8e-07 Score=85.02 Aligned_cols=98 Identities=19% Similarity=0.243 Sum_probs=71.8
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCce
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTL 339 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sf 339 (430)
-+.+...++. .|||||||+|..++.|++...+|+++ +..+...+.|+++ |. +.+.++|...---+...|
T Consensus 65 ~~~L~~~~g~---~VLEIGtGsGY~aAvla~l~~~V~si--Er~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPy 139 (209)
T COG2518 65 LQLLELKPGD---RVLEIGTGSGYQAAVLARLVGRVVSI--ERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPY 139 (209)
T ss_pred HHHhCCCCCC---eEEEECCCchHHHHHHHHHhCeEEEE--EEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCc
Confidence 3444555554 45999999999999999996689988 5557777777665 44 888888865432245789
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
|.|+....... +|+ .+.+-|+|||.+++-
T Consensus 140 D~I~Vtaaa~~-vP~--------~Ll~QL~~gGrlv~P 168 (209)
T COG2518 140 DRIIVTAAAPE-VPE--------ALLDQLKPGGRLVIP 168 (209)
T ss_pred CEEEEeeccCC-CCH--------HHHHhcccCCEEEEE
Confidence 99999766633 554 455679999999874
No 139
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.56 E-value=3.1e-07 Score=87.66 Aligned_cols=125 Identities=20% Similarity=0.224 Sum_probs=89.5
Q ss_pred CccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----CC----eeEEEcccccCC--CCCCceeEEEE
Q 043503 276 TIRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----GL----ISMHISVSQRLP--FFENTLDIVHS 344 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g~----i~~~~~d~~~lp--f~d~sfDlV~~ 344 (430)
.-.+|||...|-|.+|+..+++|+ .|+++.. ++..++.|.-+ ++ +.++.+|+..+- |+|.+||+|+-
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEk--dp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEK--DPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEee--CCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 345679999999999999999998 8988844 46667776644 22 688888875542 78999999886
Q ss_pred ccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC------cCcHHHHHHHHHHcCCEEEEE
Q 043503 345 MHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG------SQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 345 ~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~------~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
-..-.....+---+.+.+|++|+|||||.++- +.... .+....+.+.++++||.+++.
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFH--YvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFH--YVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEE--EeCCCCcccccCChhHHHHHHHHhcCceeeee
Confidence 32211111122346789999999999999753 33322 235677889999999997763
No 140
>PRK00811 spermidine synthase; Provisional
Probab=98.54 E-value=4.1e-07 Score=90.29 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=71.7
Q ss_pred CccEEEEEcCCccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhc-----------CCeeEEEcccccC-CCCCCceeE
Q 043503 276 TIRIGLDIGGGTGTFAARMRER-N-VTIITTSLNLDGPFNSFIASR-----------GLISMHISVSQRL-PFFENTLDI 341 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~r-----------g~i~~~~~d~~~l-pf~d~sfDl 341 (430)
..++||+||||+|..+..++++ + .+|+++ |+++.+++.+++. ..+.++.+|+..+ ...+++||+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~V--Eid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLV--EIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEE--eCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 3467799999999999999887 4 478888 5567888777653 2367888887553 334678999
Q ss_pred EEEccchhhcCCch--hHHHHHHHHHHhccCCcEEEEe
Q 043503 342 VHSMHVLSNWIPDS--MLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 342 V~~~~~L~~~~~d~--~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
|++... ..+.+.. ....++..+.+.|+|||.+++.
T Consensus 154 Ii~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999432 2322221 1367889999999999999874
No 141
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.53 E-value=3.3e-07 Score=87.21 Aligned_cols=89 Identities=19% Similarity=0.248 Sum_probs=61.9
Q ss_pred cEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||||||+|.+++.++.. + ..|+++ |..+...+.|+++ +. +.++++|....--....||.|++....
T Consensus 74 ~~VLeIGtGsGY~aAlla~lvg~~g~Vv~v--E~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~ 151 (209)
T PF01135_consen 74 DRVLEIGTGSGYQAALLAHLVGPVGRVVSV--ERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAV 151 (209)
T ss_dssp -EEEEES-TTSHHHHHHHHHHSTTEEEEEE--ESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESSBB
T ss_pred CEEEEecCCCcHHHHHHHHhcCccceEEEE--CccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEeecc
Confidence 45699999999999999987 4 357777 5557777777655 44 788998865433345689999997666
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.. +| ..+.+.|++||++++-
T Consensus 152 ~~-ip--------~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 152 PE-IP--------EALLEQLKPGGRLVAP 171 (209)
T ss_dssp SS-----------HHHHHTEEEEEEEEEE
T ss_pred ch-HH--------HHHHHhcCCCcEEEEE
Confidence 32 32 2567789999999873
No 142
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.53 E-value=5.7e-07 Score=84.59 Aligned_cols=119 Identities=20% Similarity=0.327 Sum_probs=78.9
Q ss_pred EEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHH----HhcCC--eeEEEccccc-CC--CCCCceeEEEEccc
Q 043503 279 IGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFI----ASRGL--ISMHISVSQR-LP--FFENTLDIVHSMHV 347 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a----~~rg~--i~~~~~d~~~-lp--f~d~sfDlV~~~~~ 347 (430)
++||||||.|.+...+|.+ +..++|+ |+....+..+ .++++ +.++.+|+.. +. ++++++|-|+..+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGi--E~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGI--EIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEE--ES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEE--ecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 6899999999999999988 6788888 5555544433 33344 8888888766 33 56799999999554
Q ss_pred hhhcCCch------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHH--cCCEEEE
Q 043503 348 LSNWIPDS------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDR--IGFKKLR 403 (430)
Q Consensus 348 L~~~~~d~------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~--~Gfk~l~ 403 (430)
= .|.... ....++..+.++|+|||.+.+.+ ......+...+.+.. .+|+...
T Consensus 98 D-PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T---D~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 98 D-PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT---DVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE---S-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred C-CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe---CCHHHHHHHHHHHHhcCcCeEEcc
Confidence 3 343211 23569999999999999998752 223344555666666 3777663
No 143
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.49 E-value=8.5e-07 Score=88.20 Aligned_cols=99 Identities=13% Similarity=0.206 Sum_probs=71.4
Q ss_pred CccEEEEEcCCcc----HHHHHHHHc------CCEEEEEecCCChhHHHHHHhc--------------------------
Q 043503 276 TIRIGLDIGGGTG----TFAARMRER------NVTIITTSLNLDGPFNSFIASR-------------------------- 319 (430)
Q Consensus 276 ~ir~VLDIGcGtG----~~a~~La~~------g~~Vv~vdiD~s~~~le~a~~r-------------------------- 319 (430)
.+ +|+..||+|| ++|..+.+. .++|+++ |++..+++.|++-
T Consensus 116 ~i-rIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~at--DIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~ 192 (287)
T PRK10611 116 EY-RVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFAS--DIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPH 192 (287)
T ss_pred CE-EEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEE--ECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCC
Confidence 44 4599999999 456655553 3678888 5556767666422
Q ss_pred -----------CCeeEEEcccccCCCC-CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 320 -----------GLISMHISVSQRLPFF-ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 320 -----------g~i~~~~~d~~~lpf~-d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
..|.|...+....+++ .+.||+|+|.+++.++ +++....++..+.+.|+|||+|++.+
T Consensus 193 ~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 193 EGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred CceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 1155666666554433 5789999999999765 44468899999999999999998854
No 144
>PRK01581 speE spermidine synthase; Validated
Probab=98.49 E-value=1.6e-06 Score=88.48 Aligned_cols=131 Identities=12% Similarity=0.117 Sum_probs=88.2
Q ss_pred CccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc-------------CCeeEEEccccc-CCCCCCce
Q 043503 276 TIRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR-------------GLISMHISVSQR-LPFFENTL 339 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r-------------g~i~~~~~d~~~-lpf~d~sf 339 (430)
..++||++|||+|..+..+.+.. .+|+.+ |+++.+++.|++. ..+.++.+|+.. +.-.++.|
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~V--EIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLV--DLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEE--eCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 34577999999999998888873 578887 6668899888851 237788888765 33345789
Q ss_pred eEEEEccchhhc---CCchhHHHHHHHHHHhccCCcEEEEeecccc-CcCcHHHHHHHHHHcCCEEEEEEeccc
Q 043503 340 DIVHSMHVLSNW---IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF-GSQLNETYVPMLDRIGFKKLRWNVGMK 409 (430)
Q Consensus 340 DlV~~~~~L~~~---~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~-~~~~~~~~~~ll~~~Gfk~l~~~~~~k 409 (430)
|+|++.. .... ...-....++..+.+.|+|||.++...-... .......+...++++|+.+.....-..
T Consensus 228 DVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vP 300 (374)
T PRK01581 228 DVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVP 300 (374)
T ss_pred cEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecC
Confidence 9999952 1111 1111235689999999999999877421110 011223467788999998887665443
No 145
>PRK03612 spermidine synthase; Provisional
Probab=98.47 E-value=1.8e-06 Score=92.77 Aligned_cols=126 Identities=13% Similarity=0.107 Sum_probs=87.7
Q ss_pred ccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc-------------CCeeEEEcccccC-CCCCCcee
Q 043503 277 IRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR-------------GLISMHISVSQRL-PFFENTLD 340 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r-------------g~i~~~~~d~~~l-pf~d~sfD 340 (430)
.++|||+|||+|..+..+++++ .+|+.+ |+++.+.+.++++ ..++++.+|+... ...+++||
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~V--Eid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQVTLV--DLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCeEEEE--ECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999998873 588888 6668899888872 2377888887653 23357899
Q ss_pred EEEEccchhhcCCc---hhHHHHHHHHHHhccCCcEEEEeeccc-cCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 341 IVHSMHVLSNWIPD---SMLEFTLYDIYRLLRPGGIFWLDRFFC-FGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 341 lV~~~~~L~~~~~d---~~l~~~L~ei~RvLrPGG~lvl~~f~~-~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+|++...- .+.+. -...++++.+.+.|+|||.+++..-.. ...+....+.+.+++.||.+....
T Consensus 376 vIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~~~~ 443 (521)
T PRK03612 376 VIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATTPYH 443 (521)
T ss_pred EEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEEEEE
Confidence 99996332 22221 112468899999999999998853111 112234568888999999544433
No 146
>PHA03412 putative methyltransferase; Provisional
Probab=98.46 E-value=9.3e-07 Score=85.32 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=79.1
Q ss_pred cEEEEEcCCccHHHHHHHHc-----CCEEEEEecCCChhHHHHHHhcC-CeeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRER-----NVTIITTSLNLDGPFNSFIASRG-LISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-----g~~Vv~vdiD~s~~~le~a~~rg-~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+|||+|||+|.++..++++ ..+|+++ |+++.+.+.|+++- .+.++.+|+...++ +++||+|+++..+...
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aV--EID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCV--ELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI 127 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEE--ECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence 35699999999999988864 4588888 55678888887662 37888889876654 5689999998665421
Q ss_pred CC---------chhHHHHHHHHHHhccCCcEEEEe----------eccccCcC-cHHHHHHHHHHcCCE
Q 043503 352 IP---------DSMLEFTLYDIYRLLRPGGIFWLD----------RFFCFGSQ-LNETYVPMLDRIGFK 400 (430)
Q Consensus 352 ~~---------d~~l~~~L~ei~RvLrPGG~lvl~----------~f~~~~~~-~~~~~~~ll~~~Gfk 400 (430)
.. ......++..+.|+++||+.++=. .++...+. ....+.+..++.|+.
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGLE 196 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccccCcccCccceeeccCcccHHHHHHHHhcCee
Confidence 10 112445888888978877763211 11101111 224577777787765
No 147
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.44 E-value=1.5e-06 Score=83.90 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=72.9
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccC-C-
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRL-P- 333 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~l-p- 333 (430)
..+....+. ++|||+|||+|.-+..++.. +.+|+++ |.++.+.+.|+++ |. +.++.+|+... +
T Consensus 61 ~~l~~~~~~---~~vLEiGt~~G~s~l~la~~~~~~g~v~ti--D~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~ 135 (234)
T PLN02781 61 SMLVKIMNA---KNTLEIGVFTGYSLLTTALALPEDGRITAI--DIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQ 135 (234)
T ss_pred HHHHHHhCC---CEEEEecCcccHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH
Confidence 334444443 45699999999988877764 4688888 5556666666544 43 78888887542 2
Q ss_pred ----CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 334 ----FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 334 ----f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
.++++||+|+.... ......++..+.+.|||||.++++..+.
T Consensus 136 l~~~~~~~~fD~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 136 LLNNDPKPEFDFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred HHhCCCCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 12468999998321 1235678999999999999999877554
No 148
>PLN02672 methionine S-methyltransferase
Probab=98.44 E-value=2.8e-06 Score=97.19 Aligned_cols=140 Identities=11% Similarity=0.076 Sum_probs=90.1
Q ss_pred cCCchhHHHHHHHccCCCC--CccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C--------
Q 043503 257 DNGKLDYGIDQVLSMKPLG--TIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G-------- 320 (430)
Q Consensus 257 ~~~~~~~~id~lL~~~p~~--~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g-------- 320 (430)
++......++. +...+.. +..+|||+|||+|.++..++.+ ..+|+++ |+++.+++.|+++ +
T Consensus 98 PRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~av--Dis~~Al~~A~~Na~~n~l~~~~~~~ 174 (1082)
T PLN02672 98 PEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGL--DINPRAVKVAWINLYLNALDDDGLPV 174 (1082)
T ss_pred CchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHcCcccccccc
Confidence 34444444555 4333322 1235799999999999999987 4688988 6667777666432 1
Q ss_pred ----------CeeEEEcccccCCCC-CCceeEEEEccchhh-------------c------------C--------Cc--
Q 043503 321 ----------LISMHISVSQRLPFF-ENTLDIVHSMHVLSN-------------W------------I--------PD-- 354 (430)
Q Consensus 321 ----------~i~~~~~d~~~lpf~-d~sfDlV~~~~~L~~-------------~------------~--------~d-- 354 (430)
.+.++.+|.....-. ...||+|+++..... + . .+
T Consensus 175 ~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL 254 (1082)
T PLN02672 175 YDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGL 254 (1082)
T ss_pred cccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHH
Confidence 378888886542211 236999999643210 0 0 00
Q ss_pred hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHH-HHHHHcCCEEEE
Q 043503 355 SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYV-PMLDRIGFKKLR 403 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~-~ll~~~Gfk~l~ 403 (430)
+....++.+..++|+|||++++.. +....+.+. +++++.||+..+
T Consensus 255 ~~yr~i~~~a~~~L~pgG~l~lEi----G~~q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 255 GLIARAVEEGISVIKPMGIMIFNM----GGRPGQAVCERLFERRGFRITK 300 (1082)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEE----CccHHHHHHHHHHHHCCCCeeE
Confidence 012567888889999999998853 233445677 699999998754
No 149
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.43 E-value=1.7e-06 Score=83.16 Aligned_cols=96 Identities=23% Similarity=0.354 Sum_probs=64.6
Q ss_pred EEEEEcCCccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhcCC--------ee-------------------------
Q 043503 279 IGLDIGGGTGTFAARMRER-N-VTIITTSLNLDGPFNSFIASRGL--------IS------------------------- 323 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~rg~--------i~------------------------- 323 (430)
-+|||||.+|.+++.+++. + -.|+|+|| ++..++.|+++-. +.
T Consensus 61 ~~LDIGCNsG~lt~~iak~F~~r~iLGvDI--D~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 61 QALDIGCNSGFLTLSIAKDFGPRRILGVDI--DPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred eeEeccCCcchhHHHHHHhhccceeeEeec--cHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 4699999999999999998 4 46788855 4667777765411 00
Q ss_pred --------E-----EEcccccCCCCCCceeEEEEccc----hhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 324 --------M-----HISVSQRLPFFENTLDIVHSMHV----LSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 324 --------~-----~~~d~~~lpf~d~sfDlV~~~~~----L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+ +.....-+.+....||+|+|..+ --+|.++ .+..+++.+.+.|.|||+|++.
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~-GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDD-GLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccH-HHHHHHHHHHHhhCcCcEEEEc
Confidence 0 00000001123457999999433 2244455 5899999999999999999983
No 150
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.42 E-value=2.2e-06 Score=89.69 Aligned_cols=129 Identities=16% Similarity=0.197 Sum_probs=85.5
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccC----CC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRL----PF 334 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~l----pf 334 (430)
++.+..........+|||+|||+|.++..+++...+|+++ |+++.+++.|+++ + .+.++.+|+... ++
T Consensus 281 ~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~v--E~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~ 358 (431)
T TIGR00479 281 VDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGI--EVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPW 358 (431)
T ss_pred HHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEE--EcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHh
Confidence 3444443332233457999999999999999988889988 6667777776654 4 378899987542 23
Q ss_pred CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.+++||+|+....-.. ....++..+. .++|++.++++ |....+.+++. .+.+.||++....
T Consensus 359 ~~~~~D~vi~dPPr~G-----~~~~~l~~l~-~l~~~~ivyvs---c~p~tlard~~-~l~~~gy~~~~~~ 419 (431)
T TIGR00479 359 AGQIPDVLLLDPPRKG-----CAAEVLRTII-ELKPERIVYVS---CNPATLARDLE-FLCKEGYGITWVQ 419 (431)
T ss_pred cCCCCCEEEECcCCCC-----CCHHHHHHHH-hcCCCEEEEEc---CCHHHHHHHHH-HHHHCCeeEEEEE
Confidence 4567999998533211 1234555544 48999988885 55444445544 4567899877765
No 151
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.41 E-value=1.5e-06 Score=96.35 Aligned_cols=122 Identities=15% Similarity=0.133 Sum_probs=84.1
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C----CeeEEEcccccC-CCCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G----LISMHISVSQRL-PFFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g----~i~~~~~d~~~l-pf~d~sfDlV~~~~~ 347 (430)
++|||+|||+|.++..++..|. +|+++ |.++.+++.++++ | .+.++.+|+..+ .-..++||+|++...
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~v--D~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKSTTTV--DMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEEEEE--eCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 4569999999999999999876 58887 7778888777654 3 267888886442 112568999999533
Q ss_pred hhh--------cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 348 LSN--------WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 348 L~~--------~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
... +........++..+.++|+|||.++++.-. ... ..-.+.+.+.|++.....
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~---~~~-~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK---RGF-KMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC---ccC-ChhHHHHHhCCCeEEEEe
Confidence 210 001112456888899999999999886422 111 223667888999877655
No 152
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.38 E-value=2.2e-06 Score=88.40 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=82.7
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCC-CCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPF-FENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf-~d~sfDlV~~~~~L~~ 350 (430)
++|||+|||+|.++..++.++.+|+++ |.++.+++.|+++ +. +.++.+|+..+.. ..++||+|+....-..
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~v--E~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G 312 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGI--EIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRG 312 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEE--ECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCC
Confidence 467999999999999999888899998 5556666665543 43 7889998765431 1246999999644321
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE-eccc
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN-VGMK 409 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~-~~~k 409 (430)
. ...++..+. .++|++.++++ |....+.+++..+ .||++.+.. +.+.
T Consensus 313 -~----~~~~l~~l~-~~~p~~ivyvs---c~p~TlaRDl~~L---~gy~l~~~~~~DmF 360 (374)
T TIGR02085 313 -I----GKELCDYLS-QMAPKFILYSS---CNAQTMAKDIAEL---SGYQIERVQLFDMF 360 (374)
T ss_pred -C----cHHHHHHHH-hcCCCeEEEEE---eCHHHHHHHHHHh---cCceEEEEEEeccC
Confidence 1 233444443 47999999997 6666667777765 699988766 3343
No 153
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.37 E-value=8.8e-07 Score=89.12 Aligned_cols=99 Identities=20% Similarity=0.314 Sum_probs=72.2
Q ss_pred ccEEEEEcCCccHHHHHHHHcCC-EEEEEecC-CChhHHHHHHhcCC---eeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 277 IRIGLDIGGGTGTFAARMRERNV-TIITTSLN-LDGPFNSFIASRGL---ISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD-~s~~~le~a~~rg~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
-++|||+|||||.++...++.|+ +|++++.. +..-..+.++.++. +.++.+..+.+.+|-.++|+|++-+.-...
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~L 140 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFL 140 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHH
Confidence 35679999999999999999974 78888432 11122344455554 888888888877778899999995443222
Q ss_pred CCchhHHHHHHHHHHhccCCcEEE
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lv 375 (430)
.-+..++.+|..-++-|+|||.++
T Consensus 141 l~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 141 LYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHhhhhhhhhhhhhhccCCCceEc
Confidence 234457888888999999999975
No 154
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=4.2e-06 Score=81.11 Aligned_cols=121 Identities=23% Similarity=0.306 Sum_probs=86.0
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLPF 334 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lpf 334 (430)
|-..+...|+.+ |||.|.|+|.++++|+.. | .+|+++ +..+.+.+.|.++ |. +.+..+|....-+
T Consensus 86 I~~~~gi~pg~r---VlEAGtGSG~lt~~La~~vg~~G~v~ty--E~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~ 160 (256)
T COG2519 86 IVARLGISPGSR---VLEAGTGSGALTAYLARAVGPEGHVTTY--EIREDFAKTARENLSEFGLGDRVTLKLGDVREGID 160 (256)
T ss_pred HHHHcCCCCCCE---EEEcccCchHHHHHHHHhhCCCceEEEE--EecHHHHHHHHHHHHHhccccceEEEecccccccc
Confidence 444445555544 599999999999999975 3 577777 6667777777766 32 6777788777655
Q ss_pred CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEE
Q 043503 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
++ .||+|+. . +++ ...++..+..+|+|||.+.+.... -++. +...+.+++.||..+
T Consensus 161 ~~-~vDav~L-----D-mp~--PW~~le~~~~~Lkpgg~~~~y~P~--veQv-~kt~~~l~~~g~~~i 216 (256)
T COG2519 161 EE-DVDAVFL-----D-LPD--PWNVLEHVSDALKPGGVVVVYSPT--VEQV-EKTVEALRERGFVDI 216 (256)
T ss_pred cc-ccCEEEE-----c-CCC--hHHHHHHHHHHhCCCcEEEEEcCC--HHHH-HHHHHHHHhcCccch
Confidence 55 8999998 3 455 678999999999999998874322 1222 334455666788744
No 155
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.36 E-value=4.3e-06 Score=84.53 Aligned_cols=116 Identities=21% Similarity=0.231 Sum_probs=88.5
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEc-ccccCCCCCCceeEEEEccchhhc
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHIS-VSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~-d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
+|||-=||||++.....-.|..++|. |++..|.+-++.+ +. ..++.. |+..+|++++++|.|++-.....-
T Consensus 200 ~vlDPFcGTGgiLiEagl~G~~viG~--Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrs 277 (347)
T COG1041 200 LVLDPFCGTGGILIEAGLMGARVIGS--DIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRS 277 (347)
T ss_pred EeecCcCCccHHHHhhhhcCceEeec--chHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcc
Confidence 45999999999999999999999999 6668888877766 32 334444 999999999999999995433211
Q ss_pred C-----C-chhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEE
Q 043503 352 I-----P-DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 352 ~-----~-d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
. . ++....+|..+.++|++||++++..+. .....+...||+++..
T Consensus 278 t~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~--------~~~~~~~~~~f~v~~~ 328 (347)
T COG1041 278 TKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR--------DPRHELEELGFKVLGR 328 (347)
T ss_pred cccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC--------cchhhHhhcCceEEEE
Confidence 1 1 245778999999999999999886542 2334577899998863
No 156
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=8.9e-06 Score=75.67 Aligned_cols=113 Identities=11% Similarity=0.097 Sum_probs=77.3
Q ss_pred cEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHhc-----CCeeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIASR-----GLISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~r-----g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
++|+|+|||||.++...+-.| .+|+++|+| +.+++.++++ |.+.|++.|..++. ..+|.|+.+..+..+
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD--~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~~ 121 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASRVLAVDID--PEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGSQ 121 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcEEEEEecC--HHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCccc
Confidence 457999999999999999887 688998555 5666666654 45999999998865 678999998877666
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
....+. .++....+.- -.++--| .....+.+.......|+.+..
T Consensus 122 ~rhaDr-~Fl~~Ale~s---~vVYsiH----~a~~~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 122 RRHADR-PFLLKALEIS---DVVYSIH----KAGSRDFVEKFAADLGGTVTH 165 (198)
T ss_pred cccCCH-HHHHHHHHhh---heEEEee----ccccHHHHHHHHHhcCCeEEE
Confidence 544333 3444444443 2222212 122346677888899987553
No 157
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.31 E-value=5.2e-06 Score=86.26 Aligned_cols=117 Identities=14% Similarity=0.087 Sum_probs=76.9
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C----CeeEEEcccccCC--C--CCCceeEEEE
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G----LISMHISVSQRLP--F--FENTLDIVHS 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g----~i~~~~~d~~~lp--f--~d~sfDlV~~ 344 (430)
++|||+|||+|.++..++..+. +|+++ |.++.+++.++++ | .+.++.+|+..+- + ..++||+|++
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga~~V~~V--D~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGCSQVVSV--DTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 4569999999999988776654 78888 6667777766543 4 2678888875531 1 2468999999
Q ss_pred ccchhhcCCc--------hhHHHHHHHHHHhccCCcEEEEeeccccCc----CcHHHHHHHHHHcCCE
Q 043503 345 MHVLSNWIPD--------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGS----QLNETYVPMLDRIGFK 400 (430)
Q Consensus 345 ~~~L~~~~~d--------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~----~~~~~~~~ll~~~Gfk 400 (430)
..... ... .....++....++|+|||.+++.. |... ...+.+.+...++|-+
T Consensus 300 DPP~f--~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s--cs~~~~~~~f~~~v~~aa~~~~~~ 363 (396)
T PRK15128 300 DPPKF--VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS--CSGLMTSDLFQKIIADAAIDAGRD 363 (396)
T ss_pred CCCCC--CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe--CCCcCCHHHHHHHHHHHHHHcCCe
Confidence 64431 111 124455667889999999998743 3221 1334455556666544
No 158
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.27 E-value=4.8e-06 Score=81.98 Aligned_cols=98 Identities=18% Similarity=0.160 Sum_probs=68.3
Q ss_pred ccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----------CCeeEEEccccc-CCCCCCceeEEE
Q 043503 277 IRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----------GLISMHISVSQR-LPFFENTLDIVH 343 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~-lpf~d~sfDlV~ 343 (430)
.++||+||||+|.++..+++.. .+++++ |+++.+++.+++. ..+.++.+|+.. +...+++||+|+
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~v--eid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLV--DIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEE--eCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3577999999999999988773 467777 5567777776653 125666666543 222357899999
Q ss_pred EccchhhcCCchh--HHHHHHHHHHhccCCcEEEEe
Q 043503 344 SMHVLSNWIPDSM--LEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 344 ~~~~L~~~~~d~~--l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+.... ...+... ...++..+.+.|+|||.+++.
T Consensus 151 ~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 85432 2222211 457889999999999999885
No 159
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.25 E-value=1.7e-05 Score=78.19 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=86.4
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHH---HHHHhc-----------------------------------
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFN---SFIASR----------------------------------- 319 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~l---e~a~~r----------------------------------- 319 (430)
.+||--|||.|+++-.++.+|+.+.+. +.|--|+ .++...
T Consensus 58 ~~VLVPGsGLGRLa~Eia~~G~~~~gn--E~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~ 135 (270)
T PF07942_consen 58 IRVLVPGSGLGRLAWEIAKLGYAVQGN--EFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD 135 (270)
T ss_pred cEEEEcCCCcchHHHHHhhccceEEEE--EchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence 356999999999999999999999988 6666654 222110
Q ss_pred --------CCeeEEEcccccCCCCC---CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEE-----Eeecccc-
Q 043503 320 --------GLISMHISVSQRLPFFE---NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFW-----LDRFFCF- 382 (430)
Q Consensus 320 --------g~i~~~~~d~~~lpf~d---~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lv-----l~~f~~~- 382 (430)
+.+.+..+|+..+..++ ++||+|++.+.++- . ..+-.++..|.++|||||+++ +-||-..
T Consensus 136 p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT-A--~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 136 PSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT-A--ENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred cccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec-h--HHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 11344455555544334 69999999766632 2 247889999999999999764 2232222
Q ss_pred -C----cC-cHHHHHHHHHHcCCEEEEEEec
Q 043503 383 -G----SQ-LNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 383 -~----~~-~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
. -+ -.+++..++++.||++++....
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~ 243 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEESS 243 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 0 11 2478999999999999987763
No 160
>PLN02366 spermidine synthase
Probab=98.24 E-value=5.8e-06 Score=83.11 Aligned_cols=98 Identities=19% Similarity=0.208 Sum_probs=69.4
Q ss_pred CccEEEEEcCCccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhc----------CCeeEEEcccccC-C-CCCCceeE
Q 043503 276 TIRIGLDIGGGTGTFAARMRER-N-VTIITTSLNLDGPFNSFIASR----------GLISMHISVSQRL-P-FFENTLDI 341 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~l-p-f~d~sfDl 341 (430)
..++||+||||.|..+..+++. + .+|+.+ |+++.+++.+++. ..+.++.+|+..+ . .++++||+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~V--EiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDIC--EIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEE--ECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 3467799999999999999987 3 467777 5557777777653 2378888886443 1 23578999
Q ss_pred EEEccchhhcCCch--hHHHHHHHHHHhccCCcEEEE
Q 043503 342 VHSMHVLSNWIPDS--MLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 342 V~~~~~L~~~~~d~--~l~~~L~ei~RvLrPGG~lvl 376 (430)
|++.. ...+.+.. ....++..+.++|+|||.++.
T Consensus 169 Ii~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 169 IIVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EEEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 99942 22222211 134689999999999999976
No 161
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.22 E-value=1.3e-05 Score=75.84 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=65.0
Q ss_pred cEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----CC--eeEEEccccc-CCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQR-LPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~-lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||+|||+|.++..++.+ ..+|+++ |.++...+.++++ +. +.++.+|+.. ++...++||+|++...+.
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a~~V~~v--E~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYAAGATLL--EMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCCCEEEEE--ECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 45799999999999976666 4688888 5556665555433 43 7788888654 322345799999976642
Q ss_pred hcCCchhHHHHHHHHHH--hccCCcEEEEeecc
Q 043503 350 NWIPDSMLEFTLYDIYR--LLRPGGIFWLDRFF 380 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~R--vLrPGG~lvl~~f~ 380 (430)
. +....++..+.. .|+|+|.+++.+..
T Consensus 133 ~----g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 133 K----GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred C----ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 2 123445555544 37999999997643
No 162
>PLN02476 O-methyltransferase
Probab=98.18 E-value=3.5e-05 Score=76.36 Aligned_cols=98 Identities=14% Similarity=0.200 Sum_probs=71.6
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC---eeEEEccccc-CC-C----CCCceeE
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQR-LP-F----FENTLDI 341 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~-lp-f----~d~sfDl 341 (430)
++|||||+|+|..+..++.. +.+|+++ |.++...+.|+++ |. +.++.+++.. ++ + .+++||+
T Consensus 120 k~VLEIGT~tGySal~lA~al~~~G~V~Ti--E~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 120 ERCIEVGVYTGYSSLAVALVLPESGCLVAC--ERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 45699999999999999874 4578887 5556666666543 44 8888888633 32 1 1468999
Q ss_pred EEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
|+.-. +......++..+.+.|+|||.++++..+..+
T Consensus 198 VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G 233 (278)
T PLN02476 198 AFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHG 233 (278)
T ss_pred EEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCC
Confidence 99832 1223678899999999999999998776554
No 163
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.17 E-value=1.5e-05 Score=77.80 Aligned_cols=123 Identities=21% Similarity=0.237 Sum_probs=80.6
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPF 334 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf 334 (430)
|-..+.+.|+.. |||.|.|+|.++..|+.. ..+|++. |..+...+.|+++ | .+.+.+.|...-.|
T Consensus 32 I~~~l~i~pG~~---VlEaGtGSG~lt~~l~r~v~p~G~v~t~--E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 32 ILMRLDIRPGSR---VLEAGTGSGSLTHALARAVGPTGHVYTY--EFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHTT--TT-E---EEEE--TTSHHHHHHHHHHTTTSEEEEE--ESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred HHHHcCCCCCCE---EEEecCCcHHHHHHHHHHhCCCeEEEcc--ccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 334455556544 599999999999999976 3588877 6678887777665 3 38888888754333
Q ss_pred C---CCceeEEEEccchhhcCCchhHHHHHHHHHHhc-cCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 335 F---ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLL-RPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 335 ~---d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvL-rPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
. +..+|.|+.- +|+ ...++..+.++| ||||.+..-... -++. ....+.+++.||..++
T Consensus 107 ~~~~~~~~DavfLD------lp~--Pw~~i~~~~~~L~~~gG~i~~fsP~--ieQv-~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 107 DEELESDFDAVFLD------LPD--PWEAIPHAKRALKKPGGRICCFSPC--IEQV-QKTVEALREHGFTDIE 168 (247)
T ss_dssp STT-TTSEEEEEEE------SSS--GGGGHHHHHHHE-EEEEEEEEEESS--HHHH-HHHHHHHHHTTEEEEE
T ss_pred cccccCcccEEEEe------CCC--HHHHHHHHHHHHhcCCceEEEECCC--HHHH-HHHHHHHHHCCCeeeE
Confidence 2 3679999982 343 456899999999 899998764222 1222 3345567788998554
No 164
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.16 E-value=7.3e-06 Score=86.38 Aligned_cols=97 Identities=19% Similarity=0.281 Sum_probs=66.1
Q ss_pred ccEEEEEcCCccHHHHHHHHcC------CEEEEEecCCChhH-H-HHHHhc---CCeeEEEcccccCCCCCCceeEEEEc
Q 043503 277 IRIGLDIGGGTGTFAARMRERN------VTIITTSLNLDGPF-N-SFIASR---GLISMHISVSQRLPFFENTLDIVHSM 345 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g------~~Vv~vdiD~s~~~-l-e~a~~r---g~i~~~~~d~~~lpf~d~sfDlV~~~ 345 (430)
..+|||+|||+|.+....++.+ .+|++++-+..+.. + +.++.+ +.|.++.+|.+.+..+. .+|+|++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVS- 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVS- 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEE-
Confidence 3578999999999987666553 68898854433222 1 222444 44999999999988654 8999999
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEE
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lv 375 (430)
..++.+...+.....|....|.|||||.++
T Consensus 265 ElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 555555555567778999999999999975
No 165
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.16 E-value=1.2e-05 Score=76.83 Aligned_cols=108 Identities=20% Similarity=0.231 Sum_probs=78.3
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC---eeEEE-ccc-ccC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL---ISMHI-SVS-QRL 332 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~-~d~-~~l 332 (430)
+..++..... ++||+||.+.|.-+..|+.. +.+++++ |.++.+.+.|+++ |. +.++. +|+ +-+
T Consensus 51 L~~L~~~~~~---k~iLEiGT~~GySal~mA~~l~~~g~l~ti--E~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l 125 (219)
T COG4122 51 LRLLARLSGP---KRILEIGTAIGYSALWMALALPDDGRLTTI--ERDEERAEIARENLAEAGVDDRIELLLGGDALDVL 125 (219)
T ss_pred HHHHHHhcCC---ceEEEeecccCHHHHHHHhhCCCCCeEEEE--eCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHH
Confidence 4455554443 45699999999999999986 4578877 6668888777765 43 66666 354 222
Q ss_pred C-CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 333 P-FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 333 p-f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
. ...++||+|+.- +.-. ....++..+.+.|||||.++++..+..+
T Consensus 126 ~~~~~~~fDliFID----adK~--~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 126 SRLLDGSFDLVFID----ADKA--DYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred HhccCCCccEEEEe----CChh--hCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 2 457899999983 2222 3668999999999999999999887654
No 166
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.16 E-value=6.1e-06 Score=81.40 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=59.4
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc---CCeeEEEcccccCCCCCCceeEE
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR---GLISMHISVSQRLPFFENTLDIV 342 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r---g~i~~~~~d~~~lpf~d~sfDlV 342 (430)
+.++.........+|||+|||+|.++..+++++.+|+++ |+++.|.+.++++ ..+.++.+|+..+++++-.+|.|
T Consensus 32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~av--E~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~v 109 (272)
T PRK00274 32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAV--EIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKV 109 (272)
T ss_pred HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEE--ECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceE
Confidence 334433332333467999999999999999998789988 5567888887765 35889999998888654335888
Q ss_pred EEccch
Q 043503 343 HSMHVL 348 (430)
Q Consensus 343 ~~~~~L 348 (430)
+++...
T Consensus 110 v~NlPY 115 (272)
T PRK00274 110 VANLPY 115 (272)
T ss_pred EEeCCc
Confidence 886443
No 167
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=2.9e-05 Score=71.77 Aligned_cols=126 Identities=16% Similarity=0.241 Sum_probs=83.8
Q ss_pred CCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCCh--hHHHHHHhcCC-eeEEEcccccCCCCCCceeEEEEcc
Q 043503 273 PLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDG--PFNSFIASRGL-ISMHISVSQRLPFFENTLDIVHSMH 346 (430)
Q Consensus 273 p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~--~~le~a~~rg~-i~~~~~d~~~lpf~d~sfDlV~~~~ 346 (430)
......++||||||+|.....+++. ++..+++|+++.+ ..++.|+.++. +..+..|...- ...++.|+++.+.
T Consensus 40 ~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 40 KGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNP 118 (209)
T ss_pred hhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECC
Confidence 3344677899999999999999887 4555666555432 23455555544 56666665331 2248899998864
Q ss_pred chhh--------------cC--Cch--hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEE
Q 043503 347 VLSN--------------WI--PDS--MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 347 ~L~~--------------~~--~d~--~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
.... |. .++ -.++++..+..+|.|.|+|++...- ....+++.++++..||...
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~---~N~p~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR---ANKPKEILKILEKKGYGVR 189 (209)
T ss_pred CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh---hcCHHHHHHHHhhccccee
Confidence 4321 11 121 2677888899999999999986433 3345778889999999754
No 168
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.14 E-value=1.4e-05 Score=80.62 Aligned_cols=99 Identities=18% Similarity=0.263 Sum_probs=72.2
Q ss_pred CccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHH-HHHHhc-CCeeEEEccc-ccCCCCCCceeEEEEccchhhcC
Q 043503 276 TIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFN-SFIASR-GLISMHISVS-QRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~l-e~a~~r-g~i~~~~~d~-~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
.+...+|+|+|.|+.+..+...-.+|-++++| .+.+ +.+..- --|..+.+|. ++.| . -|+|++.++++||.
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infd--lp~v~~~a~~~~~gV~~v~gdmfq~~P--~--~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFD--LPFVLAAAPYLAPGVEHVAGDMFQDTP--K--GDAIWMKWILHDWT 250 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecC--HHHHHhhhhhhcCCcceecccccccCC--C--cCeEEEEeecccCC
Confidence 46788999999999999999874445566444 3433 333322 1155566664 5554 3 36999999999987
Q ss_pred CchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
++ +...+|+++...|+|||.+++.+...
T Consensus 251 De-dcvkiLknC~~sL~~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 251 DE-DCVKILKNCKKSLPPGGKIIVVENVT 278 (342)
T ss_pred hH-HHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 65 69999999999999999999877643
No 169
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.13 E-value=1.1e-05 Score=79.04 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=55.1
Q ss_pred ccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCCCceeEEEEccch
Q 043503 277 IRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
..+|||||||+|.++..+++++.+|+++ |+++.+.+.++++ +.+.++.+|+..++++ .||.|+++...
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~~v~~v--Eid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~NlPy 101 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAKKVYAI--ELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSNLPY 101 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCCEEEEE--ECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEcCCc
Confidence 3557999999999999999998899988 5567777777654 4488999999887765 48999997555
No 170
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.12 E-value=1.2e-05 Score=76.29 Aligned_cols=108 Identities=23% Similarity=0.227 Sum_probs=75.5
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C---CeeEEEccccc-CC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQR-LP 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~-lp 333 (430)
+..+...... ++||+||+++|.-+..|++. +.+|++++ .++...+.|++. | .+.++.+++.. ++
T Consensus 37 L~~l~~~~~~---k~vLEIGt~~GySal~la~~l~~~g~i~tiE--~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~ 111 (205)
T PF01596_consen 37 LQMLVRLTRP---KRVLEIGTFTGYSALWLAEALPEDGKITTIE--IDPERAEIARENFRKAGLDDRIEVIEGDALEVLP 111 (205)
T ss_dssp HHHHHHHHT----SEEEEESTTTSHHHHHHHHTSTTTSEEEEEE--SSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHH
T ss_pred HHHHHHhcCC---ceEEEeccccccHHHHHHHhhcccceEEEec--CcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHH
Confidence 3444444433 45699999999999999986 68999885 456666655432 4 38999998643 22
Q ss_pred -----CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 334 -----FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 334 -----f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
...++||+|+.-.. ......++..+.+.|+|||.++++..+..+
T Consensus 112 ~l~~~~~~~~fD~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~G 160 (205)
T PF01596_consen 112 ELANDGEEGQFDFVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWRG 160 (205)
T ss_dssp HHHHTTTTTSEEEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGGG
T ss_pred HHHhccCCCceeEEEEccc------ccchhhHHHHHhhhccCCeEEEEccccccc
Confidence 11358999999422 223667888999999999999998877544
No 171
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.12 E-value=3.2e-05 Score=63.86 Aligned_cols=95 Identities=25% Similarity=0.466 Sum_probs=67.2
Q ss_pred EEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhcC----C--eeEEEccccc--CCCCC-CceeEEEEccc
Q 043503 280 GLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASRG----L--ISMHISVSQR--LPFFE-NTLDIVHSMHV 347 (430)
Q Consensus 280 VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~rg----~--i~~~~~d~~~--lpf~d-~sfDlV~~~~~ 347 (430)
++|+|||+|... .+... +..++++ |.+..++..+.... . +.+...+... +++.+ ..||++ +...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGV--DLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEE--eCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 699999999965 33333 3477775 77777776644332 1 4667777655 77777 589999 6555
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
..++.. ....+.++.++++|+|.+++.....
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 545443 5789999999999999998876553
No 172
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.10 E-value=1e-05 Score=77.91 Aligned_cols=97 Identities=23% Similarity=0.280 Sum_probs=70.0
Q ss_pred cEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhH----HHHHHhcCC--eeEEEcccccCC---CCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPF----NSFIASRGL--ISMHISVSQRLP---FFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~----le~a~~rg~--i~~~~~d~~~lp---f~d~sfDlV~~~~ 346 (430)
.++||||||.|.+...+|+++ ..++|+ ++..+. +..+.+.++ +.+++.|+..+- +++++.|-|..++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGi--Ei~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGI--EIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEE--EEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 468999999999999999994 556776 544443 344455555 788888875533 3566999999954
Q ss_pred chhhcCCc------hhHHHHHHHHHHhccCCcEEEEe
Q 043503 347 VLSNWIPD------SMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 347 ~L~~~~~d------~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.= .|... -....++..+.++|+|||.|.+.
T Consensus 128 PD-PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 128 PD-PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CC-CCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 43 44421 12346999999999999999885
No 173
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.10 E-value=2.7e-05 Score=76.71 Aligned_cols=100 Identities=21% Similarity=0.266 Sum_probs=69.1
Q ss_pred CCccEEEEEcCCcc----HHHHHHHHc-------CCEEEEEecCCChhHHHHHHhc------------------------
Q 043503 275 GTIRIGLDIGGGTG----TFAARMRER-------NVTIITTSLNLDGPFNSFIASR------------------------ 319 (430)
Q Consensus 275 ~~ir~VLDIGcGtG----~~a~~La~~-------g~~Vv~vdiD~s~~~le~a~~r------------------------ 319 (430)
+.+ +|+-+||+|| ++|..+.+. .++|+++|+ +...++.|+.-
T Consensus 96 ~~i-rIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDI--d~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~ 172 (268)
T COG1352 96 RPI-RIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDI--DLSVLEKARAGIYPSRELLRGLPPELLRRYFERGG 172 (268)
T ss_pred Cce-EEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEEC--CHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecC
Confidence 344 4599999999 455555554 267888855 45556555311
Q ss_pred -C----------CeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 320 -G----------LISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 320 -g----------~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
| .|.|...+.-.-++..+.||+|+|.+++.. .+......++..++..|+|||+|++.+
T Consensus 173 ~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIY-Fd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 173 DGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIY-FDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred CCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEe-eCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1 144555444333325677999999999965 455568899999999999999999853
No 174
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.08 E-value=2.4e-05 Score=72.58 Aligned_cols=120 Identities=20% Similarity=0.282 Sum_probs=79.0
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCE---------EEEEecCCChhHHHHHHhc----CC---eeEEEcccccCCCCCCce
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVT---------IITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLPFFENTL 339 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~---------Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lpf~d~sf 339 (430)
.++||--||+|++.++.+.. +.. +++. |+++.+++.++++ |. +.+...|+..+++.++++
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~--Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~ 107 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGS--DIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSV 107 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEE--ESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBS
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEec--CCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCC
Confidence 45799999999999888766 444 6788 5557777666554 33 788899999999888999
Q ss_pred eEEEEccchhhcCC-----chhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEec
Q 043503 340 DIVHSMHVLSNWIP-----DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 340 DlV~~~~~L~~~~~-----d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
|+|+++.....-.. ......++.++.|+|++...+++.. .+.+.+.+...+++......+
T Consensus 108 d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~--------~~~~~~~~~~~~~~~~~~~~~ 172 (179)
T PF01170_consen 108 DAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS--------NRELEKALGLKGWRKRKLYNG 172 (179)
T ss_dssp CEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES--------CCCHHHHHTSTTSEEEEEEET
T ss_pred CEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC--------CHHHHHHhcchhhceEEEEEe
Confidence 99999755532222 1234567899999999954444432 123556677778887765543
No 175
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.04 E-value=2.5e-05 Score=83.63 Aligned_cols=123 Identities=13% Similarity=0.116 Sum_probs=81.5
Q ss_pred CCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHH----HHHHhcCC--eeEEEcccccCC--CCCCceeEEE
Q 043503 274 LGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFN----SFIASRGL--ISMHISVSQRLP--FFENTLDIVH 343 (430)
Q Consensus 274 ~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~l----e~a~~rg~--i~~~~~d~~~lp--f~d~sfDlV~ 343 (430)
+....++||||||.|.+...+|.+ ...++|+ |+..... ..+.++++ +.++..++..+. ++++++|-|+
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGi--E~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAKMNPDALFIGV--EVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHHhCCCCCEEEE--EeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 334567999999999999999998 5677887 4444433 33334444 566666665433 6789999999
Q ss_pred EccchhhcCCch------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcC-CEEE
Q 043503 344 SMHVLSNWIPDS------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIG-FKKL 402 (430)
Q Consensus 344 ~~~~L~~~~~d~------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~G-fk~l 402 (430)
..+.= .|.... ....++..+.++|+|||.+.+.+ ......+.....+.+.+ |+..
T Consensus 423 i~FPD-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T---D~~~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 423 ILFPD-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS---DIENYFYEAIELIQQNGNFEII 484 (506)
T ss_pred EECCC-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc---CCHHHHHHHHHHHHhCCCeEec
Confidence 96543 453211 23468999999999999998752 22233344455556655 7654
No 176
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.03 E-value=4.7e-05 Score=74.13 Aligned_cols=79 Identities=11% Similarity=0.155 Sum_probs=57.7
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCCCcee-
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFENTLD- 340 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d~sfD- 340 (430)
+.++.........+|||+|||+|.++..+++++..|+++ |.++.+.+.++++ +.+.++.+|+..++++ .+|
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~i--E~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~ 94 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAI--EIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPK 94 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEE--ECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCC
Confidence 444443333344567999999999999999998888888 5567777777654 3478899999888765 466
Q ss_pred --EEEEccch
Q 043503 341 --IVHSMHVL 348 (430)
Q Consensus 341 --lV~~~~~L 348 (430)
+|+++-.+
T Consensus 95 ~~~vvsNlPy 104 (253)
T TIGR00755 95 QLKVVSNLPY 104 (253)
T ss_pred cceEEEcCCh
Confidence 77775443
No 177
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.02 E-value=4.8e-06 Score=81.79 Aligned_cols=107 Identities=27% Similarity=0.386 Sum_probs=80.6
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEE
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHS 344 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~ 344 (430)
+.+++...+.+.+ ++|+|||.|-....= -.+-+++. |.+...+.-++..|.......|+-.+|+.+.+||.+++
T Consensus 36 v~qfl~~~~~gsv--~~d~gCGngky~~~~--p~~~~ig~--D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 36 VRQFLDSQPTGSV--GLDVGCGNGKYLGVN--PLCLIIGC--DLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALS 109 (293)
T ss_pred HHHHHhccCCcce--eeecccCCcccCcCC--Ccceeeec--chhhhhccccccCCCceeehhhhhcCCCCCCccccchh
Confidence 4455555565544 899999999644211 13455666 66666666666555556778899999999999999999
Q ss_pred ccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 345 MHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 345 ~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
..+++|+........+++++.|+|||||...+.
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999988887777888999999999999996553
No 178
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.98 E-value=5e-05 Score=70.00 Aligned_cols=100 Identities=21% Similarity=0.250 Sum_probs=61.0
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChh-HHHHHHhcC-----CeeEEEccccc-C--C-CCCCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGP-FNSFIASRG-----LISMHISVSQR-L--P-FFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~-~le~a~~rg-----~i~~~~~d~~~-l--p-f~d~sfDlV~~~ 345 (430)
++|||+|||+|..+..++.. ..+|+.+|.+..-+ +...++.++ .+.+...+... . . ....+||+|+++
T Consensus 47 ~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Ilas 126 (173)
T PF10294_consen 47 KRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILAS 126 (173)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEEE
T ss_pred ceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEEe
Confidence 46799999999999999988 67889886654111 112333333 25555554422 2 1 235689999999
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
.++.. ++..+.++.-+.++|+|+|.+++..-.
T Consensus 127 Dv~Y~---~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 127 DVLYD---EELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp S--S----GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred cccch---HHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 99953 335888999999999999998886533
No 179
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.96 E-value=0.0001 Score=72.15 Aligned_cols=98 Identities=20% Similarity=0.301 Sum_probs=67.7
Q ss_pred EEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-------CCeeEEEccc-----ccCCCCCCceeEEEE
Q 043503 279 IGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-------GLISMHISVS-----QRLPFFENTLDIVHS 344 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~-----~~lpf~d~sfDlV~~ 344 (430)
++||+|||+|.++..++.. .++|+++ |.+...+..|.++ |.+.++..+. ...+..++.+|+++|
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~Ai--D~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTAI--DVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEEE--eccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 5799999999999999877 6777777 7777777666554 5566654432 233355789999999
Q ss_pred ccchhhcC-------------C--------c--hhHHHHHHHHHHhccCCcEEEEee
Q 043503 345 MHVLSNWI-------------P--------D--SMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 345 ~~~L~~~~-------------~--------d--~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+......- + + ..+..++.-+.|.|+|||.+++..
T Consensus 229 NPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 229 NPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred CCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 64432100 0 0 123446677889999999999864
No 180
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.94 E-value=0.00016 Score=73.08 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=48.8
Q ss_pred CCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHh----c-CC---eeEEE-cccccCC----CCCC
Q 043503 273 PLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIAS----R-GL---ISMHI-SVSQRLP----FFEN 337 (430)
Q Consensus 273 p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~----r-g~---i~~~~-~d~~~lp----f~d~ 337 (430)
+.+...++||||||+|.+...++.+ +.+++++|+ ++.+++.|++ + ++ +.+.. .+...+. .+++
T Consensus 111 p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDI--d~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 111 PRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDI--DPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeC--CHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCC
Confidence 3333456799999999888877766 788999855 4666655543 3 23 55543 2322221 2467
Q ss_pred ceeEEEEccchh
Q 043503 338 TLDIVHSMHVLS 349 (430)
Q Consensus 338 sfDlV~~~~~L~ 349 (430)
.||+|+|+..++
T Consensus 189 ~fDlivcNPPf~ 200 (321)
T PRK11727 189 RFDATLCNPPFH 200 (321)
T ss_pred ceEEEEeCCCCc
Confidence 899999987763
No 181
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.94 E-value=4.2e-05 Score=73.76 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=56.3
Q ss_pred ccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHH-HHhcCCe-eEEEcccccCC-----CCCCceeEEEEccch
Q 043503 277 IRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSF-IASRGLI-SMHISVSQRLP-----FFENTLDIVHSMHVL 348 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~-a~~rg~i-~~~~~d~~~lp-----f~d~sfDlV~~~~~L 348 (430)
.+++||+|||||.|+..++++|+ +|+++ |++..|+.. .+++..+ .+...+++.+. ..-..+|+++++..
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~ga~~v~av--D~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~- 152 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQKGAKEVYGV--DVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI- 152 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHcCCCEEEEE--eCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH-
Confidence 34679999999999999999965 78888 667766654 4443332 23333444322 11135776666432
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
..+..+.+.|+| |.+++
T Consensus 153 ----------~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 153 ----------SILPELDLLLNP-NDLTL 169 (228)
T ss_pred ----------hHHHHHHHHhCc-CeEEE
Confidence 257899999999 77654
No 182
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.93 E-value=6.1e-05 Score=77.38 Aligned_cols=116 Identities=13% Similarity=0.159 Sum_probs=78.8
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccC-C-CC--------------C
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRL-P-FF--------------E 336 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~l-p-f~--------------d 336 (430)
++||++||+|.++..+++...+|+++ |.++.+++.++++ +. +.++.+|+.++ + +. .
T Consensus 209 ~vLDl~~G~G~~sl~la~~~~~v~~v--E~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNFRRVLAT--EISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred eEEEEeccccHHHHHHHhhCCEEEEE--ECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 47999999999999998877789988 6667777766654 43 78888887552 1 10 1
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE-eccc
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN-VGMK 409 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~-~~~k 409 (430)
..||+|+.-..-.. . ...++..+.+ |++.+|++ |....+.+++..+. + ||++.+.. +++.
T Consensus 287 ~~~D~v~lDPPR~G-~----~~~~l~~l~~---~~~ivyvS---C~p~tlarDl~~L~-~-gY~l~~v~~~DmF 347 (362)
T PRK05031 287 YNFSTIFVDPPRAG-L----DDETLKLVQA---YERILYIS---CNPETLCENLETLS-Q-THKVERFALFDQF 347 (362)
T ss_pred CCCCEEEECCCCCC-C----cHHHHHHHHc---cCCEEEEE---eCHHHHHHHHHHHc-C-CcEEEEEEEcccC
Confidence 25899999544211 1 2344444443 78888886 66666667776654 3 99988876 3343
No 183
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.84 E-value=6.1e-05 Score=73.51 Aligned_cols=108 Identities=15% Similarity=0.168 Sum_probs=74.2
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC---eeEEEccccc-CC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQR-LP 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~-lp 333 (430)
+..++..... ++||+||+++|.-+..|+.. +.++++++. ++...+.|++. |. |.++.+++.. ++
T Consensus 71 L~~l~~~~~a---k~iLEiGT~~GySal~la~al~~~g~v~tiE~--~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~ 145 (247)
T PLN02589 71 LNMLLKLINA---KNTMEIGVYTGYSLLATALALPEDGKILAMDI--NRENYELGLPVIQKAGVAHKIDFREGPALPVLD 145 (247)
T ss_pred HHHHHHHhCC---CEEEEEeChhhHHHHHHHhhCCCCCEEEEEeC--CHHHHHHHHHHHHHCCCCCceEEEeccHHHHHH
Confidence 3444444443 45699999999999999875 568898855 45555555433 43 8888887633 33
Q ss_pred -C-----CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 334 -F-----FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 334 -f-----~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
+ ..++||+|+.-.- . .....++..+.+.|+|||.++++..+..+
T Consensus 146 ~l~~~~~~~~~fD~iFiDad-----K-~~Y~~y~~~~l~ll~~GGviv~DNvl~~G 195 (247)
T PLN02589 146 QMIEDGKYHGTFDFIFVDAD-----K-DNYINYHKRLIDLVKVGGVIGYDNTLWNG 195 (247)
T ss_pred HHHhccccCCcccEEEecCC-----H-HHhHHHHHHHHHhcCCCeEEEEcCCCCCC
Confidence 1 1368999999422 1 23567788889999999999998766543
No 184
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.82 E-value=0.0001 Score=70.15 Aligned_cols=118 Identities=19% Similarity=0.318 Sum_probs=83.3
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCC---CCCceeEEEEccchhhcCCc-
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPF---FENTLDIVHSMHVLSNWIPD- 354 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf---~d~sfDlV~~~~~L~~~~~d- 354 (430)
++|||||=+...+..... -..|+.+|++... ..+...|+-..|. +++.||+|+++.++ +++|+
T Consensus 54 rlLEVGals~~N~~s~~~-~fdvt~IDLns~~-----------~~I~qqDFm~rplp~~~~e~FdvIs~SLVL-NfVP~p 120 (219)
T PF11968_consen 54 RLLEVGALSTDNACSTSG-WFDVTRIDLNSQH-----------PGILQQDFMERPLPKNESEKFDVISLSLVL-NFVPDP 120 (219)
T ss_pred eEEeecccCCCCcccccC-ceeeEEeecCCCC-----------CCceeeccccCCCCCCcccceeEEEEEEEE-eeCCCH
Confidence 569999976654433221 3457777665433 3456777766665 37799999999999 66764
Q ss_pred hhHHHHHHHHHHhccCCcE-----EEEeecc-ccC-cC--cHHHHHHHHHHcCCEEEEEEeccc
Q 043503 355 SMLEFTLYDIYRLLRPGGI-----FWLDRFF-CFG-SQ--LNETYVPMLDRIGFKKLRWNVGMK 409 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~-----lvl~~f~-~~~-~~--~~~~~~~ll~~~Gfk~l~~~~~~k 409 (430)
.....++..+.+.|+|+|. +++.... |.. .. ..+.+..+++..||..++.....|
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~K 184 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKSKK 184 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEecCe
Confidence 4577899999999999999 7665433 221 22 336789999999999998776655
No 185
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=6.5e-05 Score=70.97 Aligned_cols=93 Identities=16% Similarity=0.252 Sum_probs=67.5
Q ss_pred cCCCCCccEEEEEcCCccHHHHHHHHc----CCEEEEEecCCChhHHHHHHhc----------------CCeeEEEcccc
Q 043503 271 MKPLGTIRIGLDIGGGTGTFAARMRER----NVTIITTSLNLDGPFNSFIASR----------------GLISMHISVSQ 330 (430)
Q Consensus 271 ~~p~~~ir~VLDIGcGtG~~a~~La~~----g~~Vv~vdiD~s~~~le~a~~r----------------g~i~~~~~d~~ 330 (430)
+.|+.+. ||+|.|+|.++..++.. |..++|+ +..++.++.++++ +.+.++++|..
T Consensus 80 L~pG~s~---LdvGsGSGYLt~~~~~mvg~~g~~~~GI--Eh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr 154 (237)
T KOG1661|consen 80 LQPGASF---LDVGSGSGYLTACFARMVGATGGNVHGI--EHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGR 154 (237)
T ss_pred hccCcce---eecCCCccHHHHHHHHHhcCCCccccch--hhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcc
Confidence 3677666 99999999999988865 3333444 7667666655433 44788899988
Q ss_pred cCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 331 RLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 331 ~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
...-+..+||.||+...- ....+++-..|+|||.+++-
T Consensus 155 ~g~~e~a~YDaIhvGAaa---------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 155 KGYAEQAPYDAIHVGAAA---------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ccCCccCCcceEEEccCc---------cccHHHHHHhhccCCeEEEe
Confidence 877678899999995222 23455777789999999883
No 186
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.80 E-value=0.00015 Score=74.22 Aligned_cols=116 Identities=9% Similarity=0.078 Sum_probs=78.7
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCC-----------C-----C
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPF-----------F-----E 336 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf-----------~-----d 336 (430)
.+||++||+|.++..+++...+|+++ |.++.+++.++++ +. +.++.+|+.++-- . .
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~v--E~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLAT--EIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEE--ECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 37999999999999998876788988 6678888777654 43 7888888755210 0 1
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE-eccc
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN-VGMK 409 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~-~~~k 409 (430)
..||+|+....-.. . ...++..+. +|++.+|++ |....+.+++..+. .||++.+.. +++.
T Consensus 278 ~~~d~v~lDPPR~G-~----~~~~l~~l~---~~~~ivYvs---C~p~tlaRDl~~L~--~~Y~l~~v~~~DmF 338 (353)
T TIGR02143 278 YNCSTIFVDPPRAG-L----DPDTCKLVQ---AYERILYIS---CNPETLKANLEQLS--ETHRVERFALFDQF 338 (353)
T ss_pred CCCCEEEECCCCCC-C----cHHHHHHHH---cCCcEEEEE---cCHHHHHHHHHHHh--cCcEEEEEEEcccC
Confidence 23799998544211 1 233444443 489999996 77666777777655 349888766 4444
No 187
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.80 E-value=0.00018 Score=67.34 Aligned_cols=95 Identities=14% Similarity=0.065 Sum_probs=61.8
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C---CeeEEEccccc-CC-C-C-CCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G---LISMHISVSQR-LP-F-F-ENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~-lp-f-~-d~sfDlV~~~ 345 (430)
.++||++||+|.++..++.+|+ .|+++ |.+....+.++++ + .+.++.+|+.+ +. + . ...||+|+..
T Consensus 51 ~~vLDLfaGsG~lglea~srga~~v~~v--E~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAKVAFLE--EDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCCEEEEE--eCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 3469999999999999999976 78888 5555555544433 3 36788888733 22 1 1 2247888885
Q ss_pred cchhhcCCchhHHHHHHHH--HHhccCCcEEEEee
Q 043503 346 HVLSNWIPDSMLEFTLYDI--YRLLRPGGIFWLDR 378 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei--~RvLrPGG~lvl~~ 378 (430)
..+.. . .....+..+ ...|++||.+++.+
T Consensus 129 PPy~~---~-~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 129 PPFFN---G-ALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred cCCCC---C-cHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 54422 1 133444444 34789999888865
No 188
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.79 E-value=6.2e-05 Score=69.23 Aligned_cols=124 Identities=20% Similarity=0.281 Sum_probs=67.5
Q ss_pred CCCCccEEEEEcCCccHHHHHHHHcC---CEEEEEecCCChhHHHHHHhcCCeeEEEcccc------cCC--C--CCCce
Q 043503 273 PLGTIRIGLDIGGGTGTFAARMRERN---VTIITTSLNLDGPFNSFIASRGLISMHISVSQ------RLP--F--FENTL 339 (430)
Q Consensus 273 p~~~ir~VLDIGcGtG~~a~~La~~g---~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~------~lp--f--~d~sf 339 (430)
..+...++||+||++|.|+..+.+++ ..|+++|+....+. ..+.++.+|.. .+. + ....+
T Consensus 20 ~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-------~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 20 KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-------QNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp -TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS--------TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred CcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-------cceeeeecccchhhHHHhhhhhccccccCc
Confidence 33345678999999999999999997 78999977544221 11222232221 111 1 12689
Q ss_pred eEEEEccch---h-----hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEec
Q 043503 340 DIVHSMHVL---S-----NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 340 DlV~~~~~L---~-----~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
|+|+|-... . ++.........+.-+...|+|||.+++..|-.. ... .+...+.. .|+.+.+...
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~--~~~-~~~~~l~~-~F~~v~~~Kp 164 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP--EIE-ELIYLLKR-CFSKVKIVKP 164 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST--TSH-HHHHHHHH-HHHHEEEEE-
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc--cHH-HHHHHHHh-CCeEEEEEEC
Confidence 999994411 0 111111234455556678999999988765522 222 33333333 4555554433
No 189
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.79 E-value=0.00025 Score=71.22 Aligned_cols=127 Identities=16% Similarity=0.246 Sum_probs=78.5
Q ss_pred HHccCCCCCccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHh----cC---CeeEEEcccccCCCCCCce
Q 043503 268 VLSMKPLGTIRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIAS----RG---LISMHISVSQRLPFFENTL 339 (430)
Q Consensus 268 lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~----rg---~i~~~~~d~~~lpf~d~sf 339 (430)
++....+-.-++|||+|||+|.+....++.|+ +|+++ +. .+|.+.|+. +. .|.++.+..+...+| ++.
T Consensus 169 il~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAv--EA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~ 244 (517)
T KOG1500|consen 169 ILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAV--EA-SEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKV 244 (517)
T ss_pred HHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEE--eh-hHHHHHHHHHHhcCCccceEEEccCccccccCc-hhc
Confidence 33333333457899999999999998888875 67777 43 346555543 22 277788888887765 478
Q ss_pred eEEEEccchhhc-CCchhHHHHHHHHHHhccCCcEEEEe--eccccCcCcHHHHHHHHHHcCCE
Q 043503 340 DIVHSMHVLSNW-IPDSMLEFTLYDIYRLLRPGGIFWLD--RFFCFGSQLNETYVPMLDRIGFK 400 (430)
Q Consensus 340 DlV~~~~~L~~~-~~d~~l~~~L~ei~RvLrPGG~lvl~--~f~~~~~~~~~~~~~ll~~~Gfk 400 (430)
|++++- .+..+ ..+..++.++ ...|-|+|.|..+=+ +.....-.+...|.+++.++.|=
T Consensus 245 DviISE-PMG~mL~NERMLEsYl-~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFW 306 (517)
T KOG1500|consen 245 DVIISE-PMGYMLVNERMLESYL-HARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFW 306 (517)
T ss_pred cEEEec-cchhhhhhHHHHHHHH-HHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhh
Confidence 999983 22222 2343444444 455999999987521 11111112334577777777663
No 190
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.79 E-value=7.9e-05 Score=74.53 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=53.2
Q ss_pred ccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc-------CCeeEEEcccccCCCCCCceeEEEEccch
Q 043503 277 IRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR-------GLISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
..+|||||||+|.++..+++++.+|+++ |+++.+.+.++++ +.+.++.+|+...++ ..||+|+++...
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~~V~av--EiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~VvaNlPY 111 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAKKVIAI--EIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVANVPY 111 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCCcEEEE--ECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEecCCc
Confidence 3467999999999999999998889998 5557777766543 348899999877664 368999986444
No 191
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.76 E-value=0.00031 Score=64.28 Aligned_cols=114 Identities=18% Similarity=0.083 Sum_probs=82.7
Q ss_pred HHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCC---EEEEEecCCChhHHHHHHhcC-CeeEEEcccccCC-----C
Q 043503 264 GIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNV---TIITTSLNLDGPFNSFIASRG-LISMHISVSQRLP-----F 334 (430)
Q Consensus 264 ~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~---~Vv~vdiD~s~~~le~a~~rg-~i~~~~~d~~~lp-----f 334 (430)
..+.+.+.+...+.--||++|.|||.++.++.++|+ .++.+ +.+..+.....++- -+.++.+|+..+. +
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~i--E~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~ 113 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAI--EYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEH 113 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEE--EeCHHHHHHHHHhCCCccccccchhhHHHHHhhc
Confidence 345555555444434469999999999999999964 34444 77777777666552 2567788776655 5
Q ss_pred CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
.+..||.|+|.-.+.+ +|-.....++.++...|++||.++.-.+.
T Consensus 114 ~gq~~D~viS~lPll~-~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 114 KGQFFDSVISGLPLLN-FPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CCCeeeeEEecccccc-CcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 6788999999877755 34445678999999999999999876544
No 192
>PRK04148 hypothetical protein; Provisional
Probab=97.74 E-value=0.00033 Score=62.16 Aligned_cols=93 Identities=10% Similarity=0.086 Sum_probs=65.4
Q ss_pred ccEEEEEcCCccH-HHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCC-CCceeEEEEccchhhcCCc
Q 043503 277 IRIGLDIGGGTGT-FAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFF-ENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 277 ir~VLDIGcGtG~-~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~-d~sfDlV~~~~~L~~~~~d 354 (430)
..++||||||+|. ++..|++.|..|+++ |+++...+.+++++. .++.+|...-++. -..+|+|.+.+.- .
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~ViaI--Di~~~aV~~a~~~~~-~~v~dDlf~p~~~~y~~a~liysirpp-----~ 88 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFDVIVI--DINEKAVEKAKKLGL-NAFVDDLFNPNLEIYKNAKLIYSIRPP-----R 88 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCEEEEE--ECCHHHHHHHHHhCC-eEEECcCCCCCHHHHhcCCEEEEeCCC-----H
Confidence 3567999999995 999999999999999 555677888877765 7788886554322 3568999995433 1
Q ss_pred hhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 355 SMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
.+...+.++.+-.. .-+++.++.
T Consensus 89 -el~~~~~~la~~~~--~~~~i~~l~ 111 (134)
T PRK04148 89 -DLQPFILELAKKIN--VPLIIKPLS 111 (134)
T ss_pred -HHHHHHHHHHHHcC--CCEEEEcCC
Confidence 25556666666554 456665544
No 193
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.00018 Score=68.10 Aligned_cols=135 Identities=21% Similarity=0.215 Sum_probs=81.9
Q ss_pred cEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC--------CCCCceeEEEEc-
Q 043503 278 RIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP--------FFENTLDIVHSM- 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp--------f~d~sfDlV~~~- 345 (430)
..|+|+|+-.|.|+..++++ + ..|+++|+++..+. ..+.++++|+..-+ +....+|+|++-
T Consensus 47 ~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-------~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ 119 (205)
T COG0293 47 MVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-------PGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDM 119 (205)
T ss_pred CEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-------CCceEEeeeccCccHHHHHHHHcCCCCcceEEecC
Confidence 34799999999999999988 3 44899977643321 12677888766533 334557999972
Q ss_pred --cchhhcCCc-----hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEecccccCCCchhH
Q 043503 346 --HVLSNWIPD-----SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMKLDRGVKKNE 418 (430)
Q Consensus 346 --~~L~~~~~d-----~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~~k~~~g~~~~~ 418 (430)
++-.++.-| ......+.-+.++|+|||.|++..|-. ...+.+...+.+ .|+.++.... +..+..+. |
T Consensus 120 ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg---~~~~~~l~~~~~-~F~~v~~~KP-~aSR~~S~-E 193 (205)
T COG0293 120 APNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG---EDFEDLLKALRR-LFRKVKIFKP-KASRKRSR-E 193 (205)
T ss_pred CCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC---CCHHHHHHHHHH-hhceeEEecC-ccccCCCc-e
Confidence 111222212 123345556677999999999987663 223444444443 4777764433 33333333 6
Q ss_pred HHhHhhc
Q 043503 419 WYFSAVL 425 (430)
Q Consensus 419 ~~lsa~l 425 (430)
+|+-+..
T Consensus 194 ~y~v~~~ 200 (205)
T COG0293 194 IYLVAKG 200 (205)
T ss_pred EEEEEec
Confidence 6664443
No 194
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.58 E-value=0.0019 Score=64.16 Aligned_cols=102 Identities=18% Similarity=0.248 Sum_probs=72.6
Q ss_pred CCCccEEEEEcCCccHHHHHHHHc--C--CEEEEEecCCChhHH----HHHHhcCC---eeEEEcccccCC-C--CCCce
Q 043503 274 LGTIRIGLDIGGGTGTFAARMRER--N--VTIITTSLNLDGPFN----SFIASRGL---ISMHISVSQRLP-F--FENTL 339 (430)
Q Consensus 274 ~~~ir~VLDIGcGtG~~a~~La~~--g--~~Vv~vdiD~s~~~l----e~a~~rg~---i~~~~~d~~~lp-f--~d~sf 339 (430)
+..+ +||||.||.|.......+. . ..|.-. |.++.-+ +.++++|+ +.|..+|+.... + -+-..
T Consensus 134 g~pv-rIlDIAaG~GRYvlDal~~~~~~~~~i~Lr--Dys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 134 GRPV-RILDIAAGHGRYVLDALEKHPERPDSILLR--DYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred CCce-EEEEeccCCcHHHHHHHHhCCCCCceEEEE--eCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCC
Confidence 3444 4599999999887777665 2 455555 5555433 55667777 588998864422 2 23457
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
++++.+..++.+.+.+.....+..+.+++.|||+++.+.
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 999998888765555667778999999999999999865
No 195
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.58 E-value=2.4e-05 Score=73.76 Aligned_cols=136 Identities=19% Similarity=0.277 Sum_probs=94.3
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhH
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSML 357 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l 357 (430)
.++||+|.|.|.++..|+..--+|.++ +.|..|....+.++.--+-..+... .+-+||+|.|.+.+... .+ .
T Consensus 114 ~~lLDlGAGdGeit~~m~p~feevyAT--ElS~tMr~rL~kk~ynVl~~~ew~~---t~~k~dli~clNlLDRc-~~--p 185 (288)
T KOG3987|consen 114 VTLLDLGAGDGEITLRMAPTFEEVYAT--ELSWTMRDRLKKKNYNVLTEIEWLQ---TDVKLDLILCLNLLDRC-FD--P 185 (288)
T ss_pred eeEEeccCCCcchhhhhcchHHHHHHH--HhhHHHHHHHhhcCCceeeehhhhh---cCceeehHHHHHHHHhh-cC--h
Confidence 577999999999999998775556666 7788888888777652121222211 24469999999888653 33 6
Q ss_pred HHHHHHHHHhccC-CcEEEEe------eccccCcC----------------c---HHHHHHHHHHcCCEEEEEEeccccc
Q 043503 358 EFTLYDIYRLLRP-GGIFWLD------RFFCFGSQ----------------L---NETYVPMLDRIGFKKLRWNVGMKLD 411 (430)
Q Consensus 358 ~~~L~ei~RvLrP-GG~lvl~------~f~~~~~~----------------~---~~~~~~ll~~~Gfk~l~~~~~~k~~ 411 (430)
..+|.++.-+|+| .|.+++. ++...+.. . ...+.+++++.||.+..|+.-+...
T Consensus 186 ~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrlPYLC 265 (288)
T KOG3987|consen 186 FKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRLPYLC 265 (288)
T ss_pred HHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcCCeec
Confidence 6899999999999 7887653 22221100 0 1125668999999999999988888
Q ss_pred CCCchhHHHh
Q 043503 412 RGVKKNEWYF 421 (430)
Q Consensus 412 ~g~~~~~~~l 421 (430)
.|.-....|.
T Consensus 266 EGDm~ns~Y~ 275 (288)
T KOG3987|consen 266 EGDMHNSFYW 275 (288)
T ss_pred ccccccceEE
Confidence 7755555443
No 196
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.58 E-value=0.00025 Score=73.40 Aligned_cols=90 Identities=17% Similarity=0.165 Sum_probs=64.5
Q ss_pred EEEEEcCCccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHh----cCC--eeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 279 IGLDIGGGTGTFAARMRER-N-VTIITTSLNLDGPFNSFIAS----RGL--ISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~----rg~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
+|||++||+|.++++++.. + ..|+++ |.++...+.+++ ++. +.++.+|+..+....+.||+|+... .
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~~~~V~a~--Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETGVEKVTLN--DINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred EEEECCCcccHHHHHHHHHCCCCEEEEE--eCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 5799999999999999876 4 378888 555666655544 344 5577788765431146799999942 2
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+....++....+.+++||+++++
T Consensus 135 ----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 12356778878889999999986
No 197
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00054 Score=72.02 Aligned_cols=130 Identities=16% Similarity=0.200 Sum_probs=89.1
Q ss_pred HHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHh----cCC--eeEEEcccccCCCC--
Q 043503 264 GIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIAS----RGL--ISMHISVSQRLPFF-- 335 (430)
Q Consensus 264 ~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~----rg~--i~~~~~d~~~lpf~-- 335 (430)
.++..+.........++||+=||.|+|+..++++..+|+|+ ++++.+++.|++ +|. +.|..++++++...
T Consensus 281 l~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gv--Ei~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~ 358 (432)
T COG2265 281 LYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGV--EISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW 358 (432)
T ss_pred HHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEE--ecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc
Confidence 34444444444444567999999999999999999999999 556666665544 344 78888988876632
Q ss_pred -CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 336 -ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 336 -d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
...+|.|+... |...++..+-+...-++|-..++++ |+...+.+++. .+...||++.+..
T Consensus 359 ~~~~~d~VvvDP------PR~G~~~~~lk~l~~~~p~~IvYVS---CNP~TlaRDl~-~L~~~gy~i~~v~ 419 (432)
T COG2265 359 EGYKPDVVVVDP------PRAGADREVLKQLAKLKPKRIVYVS---CNPATLARDLA-ILASTGYEIERVQ 419 (432)
T ss_pred ccCCCCEEEECC------CCCCCCHHHHHHHHhcCCCcEEEEe---CCHHHHHHHHH-HHHhCCeEEEEEE
Confidence 35789999842 2222332333444457778888886 88777767664 5777888866655
No 198
>PLN02823 spermine synthase
Probab=97.55 E-value=0.00046 Score=70.31 Aligned_cols=99 Identities=15% Similarity=0.185 Sum_probs=68.3
Q ss_pred CccEEEEEcCCccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhc----------CCeeEEEcccccC-CCCCCceeEE
Q 043503 276 TIRIGLDIGGGTGTFAARMRER-N-VTIITTSLNLDGPFNSFIASR----------GLISMHISVSQRL-PFFENTLDIV 342 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~l-pf~d~sfDlV 342 (430)
..++||.||+|.|..+.++.+. + .+|+.+ |+++.+.+.+++. ..+.++.+|+..+ ...+++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~V--EiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMC--DIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEE--ECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 3467799999999999998886 3 467777 5567888888753 2377888886543 3345789999
Q ss_pred EEccchhhcC---Cc-hhHHHHHH-HHHHhccCCcEEEEe
Q 043503 343 HSMHVLSNWI---PD-SMLEFTLY-DIYRLLRPGGIFWLD 377 (430)
Q Consensus 343 ~~~~~L~~~~---~d-~~l~~~L~-ei~RvLrPGG~lvl~ 377 (430)
++- +...+. +. -....++. .+.+.|+|||.+++.
T Consensus 181 i~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 181 IGD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred Eec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 994 222110 00 01235676 899999999998764
No 199
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.54 E-value=0.00079 Score=66.03 Aligned_cols=83 Identities=22% Similarity=0.217 Sum_probs=57.6
Q ss_pred eEEEcccccCC-CCC-----CceeEEEEccchhhcCCc-hhHHHHHHHHHHhccCCcEEEEeeccc-----cCcC-----
Q 043503 323 SMHISVSQRLP-FFE-----NTLDIVHSMHVLSNWIPD-SMLEFTLYDIYRLLRPGGIFWLDRFFC-----FGSQ----- 385 (430)
Q Consensus 323 ~~~~~d~~~lp-f~d-----~sfDlV~~~~~L~~~~~d-~~l~~~L~ei~RvLrPGG~lvl~~f~~-----~~~~----- 385 (430)
.++..|....+ +.. .+||+|++..+++...++ +.-...++++.++|||||.|++...+. .+..
T Consensus 137 ~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l 216 (256)
T PF01234_consen 137 QVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCL 216 (256)
T ss_dssp EEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE--
T ss_pred eEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccc
Confidence 35556654433 332 359999999999876644 346678999999999999999865432 1111
Q ss_pred --cHHHHHHHHHHcCCEEEEEE
Q 043503 386 --LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 386 --~~~~~~~ll~~~Gfk~l~~~ 405 (430)
..+.+.+.++++||.+..+.
T Consensus 217 ~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 217 PLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp -B-HHHHHHHHHHTTEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCEEEecc
Confidence 23578899999999999887
No 200
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.51 E-value=0.00034 Score=66.22 Aligned_cols=89 Identities=21% Similarity=0.215 Sum_probs=59.0
Q ss_pred cEEEEEcCCccHHHHHHHH--cCCEEEEEecCCCh--hHHHHHHhcCC---eeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRE--RNVTIITTSLNLDG--PFNSFIASRGL---ISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~--~g~~Vv~vdiD~s~--~~le~a~~rg~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
.+|+|+.||.|.|+..++. ++..|+++|+++.+ -+.+.++.++. +..+.+|+..+.. .+.||-|++...-
T Consensus 103 e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp~-- 179 (200)
T PF02475_consen 103 EVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLPE-- 179 (200)
T ss_dssp -EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--TS--
T ss_pred eEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECChH--
Confidence 4579999999999999998 57889999665332 22344444433 7888999888764 7899999994321
Q ss_pred cCCchhHHHHHHHHHHhccCCcEE
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIF 374 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~l 374 (430)
. ...+|..+.+++++||.+
T Consensus 180 ---~--~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 180 ---S--SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp ---S--GGGGHHHHHHHEEEEEEE
T ss_pred ---H--HHHHHHHHHHHhcCCcEE
Confidence 1 335888899999999976
No 201
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.50 E-value=0.00014 Score=74.75 Aligned_cols=96 Identities=25% Similarity=0.415 Sum_probs=72.9
Q ss_pred EEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHH----hc---CCeeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 280 GLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIA----SR---GLISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 280 VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~----~r---g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
++|+|||.|....+++.. +..++++ +.++-....+. .. ....++..|+...||++++||.|-+..+..|
T Consensus 114 ~~~~~~g~~~~~~~i~~f~~~~~~Gl--~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~- 190 (364)
T KOG1269|consen 114 VLDVGTGVGGPSRYIAVFKKAGVVGL--DNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCH- 190 (364)
T ss_pred ccccCcCcCchhHHHHHhccCCccCC--CcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeeccc-
Confidence 499999999999999887 5777877 44442222111 11 2244577889999999999999999888844
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
.++ ....+.|++|+++|||++...++.
T Consensus 191 ~~~--~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 191 APD--LEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred CCc--HHHHHHHHhcccCCCceEEeHHHH
Confidence 676 889999999999999999875544
No 202
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.50 E-value=0.00065 Score=65.12 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=77.0
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhH--HHHHHhcCC---eeEEEccc-ccCC--
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPF--NSFIASRGL---ISMHISVS-QRLP-- 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~--le~a~~rg~---i~~~~~d~-~~lp-- 333 (430)
++.+++....+. .||||.=||.-+..+|.. +.+|+++|+|..... .+..+..|. +.++++.+ +.++
T Consensus 65 l~~li~~~~ak~---~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l 141 (237)
T KOG1663|consen 65 LQMLIRLLNAKR---TLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDEL 141 (237)
T ss_pred HHHHHHHhCCce---EEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHH
Confidence 445555555444 499999999887777766 789999988754322 234444454 88888864 3333
Q ss_pred ---CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 334 ---FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 334 ---f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
...++||+++. .+|-.. -..+..+..+++|+||.++++..++.+
T Consensus 142 ~~~~~~~tfDfaFv----DadK~n--Y~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 142 LADGESGTFDFAFV----DADKDN--YSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred HhcCCCCceeEEEE----ccchHH--HHHHHHHHHhhcccccEEEEeccccCC
Confidence 35689999998 344433 447899999999999999998766655
No 203
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.50 E-value=0.00044 Score=67.79 Aligned_cols=78 Identities=19% Similarity=0.278 Sum_probs=59.8
Q ss_pred HHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc-------CCeeEEEcccccCCCCC
Q 043503 264 GIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR-------GLISMHISVSQRLPFFE 336 (430)
Q Consensus 264 ~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~~~lpf~d 336 (430)
.++++....+......||+||.|||.++..|.+.|.+|+++++ ++.|.....+| +...++++|.-..++|
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~--Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEI--DPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEec--CcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 3566666555556677899999999999999999999999955 46777777666 2267888887665533
Q ss_pred CceeEEEEc
Q 043503 337 NTLDIVHSM 345 (430)
Q Consensus 337 ~sfDlV~~~ 345 (430)
.||.++++
T Consensus 123 -~fd~cVsN 130 (315)
T KOG0820|consen 123 -RFDGCVSN 130 (315)
T ss_pred -ccceeecc
Confidence 58999984
No 204
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.43 E-value=0.00088 Score=69.50 Aligned_cols=125 Identities=14% Similarity=0.067 Sum_probs=83.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----CC----eeEEEccccc-CC---CCCCceeEEEE
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----GL----ISMHISVSQR-LP---FFENTLDIVHS 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g~----i~~~~~d~~~-lp---f~d~sfDlV~~ 344 (430)
++|||+=|=||.|+.+.+..|+ +|+++ |.|...++.|+++ |. +.++++|+-. +. -...+||+|+.
T Consensus 219 krvLNlFsYTGgfSv~Aa~gGA~~vt~V--D~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 219 KRVLNLFSYTGGFSVHAALGGASEVTSV--DLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CeEEEecccCcHHHHHHHhcCCCceEEE--eccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 4569999999999999999998 89988 7778878777765 44 6788888533 22 22458999999
Q ss_pred ccch-hh-----cCCchhHHHHHHHHHHhccCCcEEEEeeccccC--cCcHHHHHHHHHHcCCEEEEE
Q 043503 345 MHVL-SN-----WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG--SQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 345 ~~~L-~~-----~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~--~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
-..- .. |.-......++....++|+|||.++++.-...- ....+.+...+...|......
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 3221 11 111123567888999999999999987522111 112344555566666554443
No 205
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.40 E-value=0.0021 Score=65.44 Aligned_cols=125 Identities=16% Similarity=0.146 Sum_probs=86.1
Q ss_pred HHHccCCCCCccEEEEEcCCccHHHHHHHHcCCE-EEEEecCCCh--hHHHHHHhcCC---eeEEEcccccCCCCCCcee
Q 043503 267 QVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVT-IITTSLNLDG--PFNSFIASRGL---ISMHISVSQRLPFFENTLD 340 (430)
Q Consensus 267 ~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~-Vv~vdiD~s~--~~le~a~~rg~---i~~~~~d~~~lpf~d~sfD 340 (430)
+++.....+. +|||+=+|.|.|+..+|..|.. |+++|+|+.+ -+.+.++.++. +..+.+|+..+....+.+|
T Consensus 181 Rva~~v~~GE--~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aD 258 (341)
T COG2520 181 RVAELVKEGE--TVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVAD 258 (341)
T ss_pred HHHhhhcCCC--EEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCC
Confidence 4444444333 4799999999999999999765 8888665432 12244444443 7788999988775558899
Q ss_pred EEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC---cHHHHHHHHHHcCCE
Q 043503 341 IVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ---LNETYVPMLDRIGFK 400 (430)
Q Consensus 341 lV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~---~~~~~~~ll~~~Gfk 400 (430)
-|++...- . ...++....+.+++||.+.+.++...... ....+.....+.|++
T Consensus 259 rIim~~p~-----~--a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~ 314 (341)
T COG2520 259 RIIMGLPK-----S--AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYK 314 (341)
T ss_pred EEEeCCCC-----c--chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCc
Confidence 99995332 1 45688899999999999887665533321 335666777777764
No 206
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.39 E-value=0.00069 Score=69.42 Aligned_cols=131 Identities=16% Similarity=0.147 Sum_probs=77.5
Q ss_pred HHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHh----cCC--eeEEEcccccCC---
Q 043503 263 YGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIAS----RGL--ISMHISVSQRLP--- 333 (430)
Q Consensus 263 ~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~----rg~--i~~~~~d~~~lp--- 333 (430)
..++.++..++...- .+||+-||+|+|+..+++...+|+|+ +..+.+++.|++ ++. +.|+.++++.+.
T Consensus 184 ~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gv--E~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~ 260 (352)
T PF05958_consen 184 KLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGV--EIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKAL 260 (352)
T ss_dssp HHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEE--ES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHH
T ss_pred HHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEe--eCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHH
Confidence 345566665554332 57999999999999999999999999 556777766654 344 788876654331
Q ss_pred -------------CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCE
Q 043503 334 -------------FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFK 400 (430)
Q Consensus 334 -------------f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk 400 (430)
.....+|+|+.-..-.. ... .++..+. ++.-.+|++ |....+.+++..+ . .||+
T Consensus 261 ~~~r~~~~~~~~~~~~~~~d~vilDPPR~G-~~~----~~~~~~~---~~~~ivYvS---CnP~tlaRDl~~L-~-~~y~ 327 (352)
T PF05958_consen 261 AKAREFNRLKGIDLKSFKFDAVILDPPRAG-LDE----KVIELIK---KLKRIVYVS---CNPATLARDLKIL-K-EGYK 327 (352)
T ss_dssp CCS-GGTTGGGS-GGCTTESEEEE---TT--SCH----HHHHHHH---HSSEEEEEE---S-HHHHHHHHHHH-H-CCEE
T ss_pred HhhHHHHhhhhhhhhhcCCCEEEEcCCCCC-chH----HHHHHHh---cCCeEEEEE---CCHHHHHHHHHHH-h-hcCE
Confidence 12336899988433211 221 2333332 345566675 8887777888765 3 3999
Q ss_pred EEEEE-eccc
Q 043503 401 KLRWN-VGMK 409 (430)
Q Consensus 401 ~l~~~-~~~k 409 (430)
+.+.. +++.
T Consensus 328 ~~~v~~~DmF 337 (352)
T PF05958_consen 328 LEKVQPVDMF 337 (352)
T ss_dssp EEEEEEE-SS
T ss_pred EEEEEEeecC
Confidence 88766 4444
No 207
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.36 E-value=0.0024 Score=67.86 Aligned_cols=119 Identities=12% Similarity=0.204 Sum_probs=73.2
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHH----HhcCC--eeEEEcccccCC-CCCCceeEEEE---
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFI----ASRGL--ISMHISVSQRLP-FFENTLDIVHS--- 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a----~~rg~--i~~~~~d~~~lp-f~d~sfDlV~~--- 344 (430)
.+|||+++|.|.=+..+++. ...|++. |+++..++.. ..-|. +.+...|...+. ...+.||.|+.
T Consensus 115 ~~VLD~CAAPGgKTt~la~~l~~~g~lvA~--D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaP 192 (470)
T PRK11933 115 QRVLDMAAAPGSKTTQIAALMNNQGAIVAN--EYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAP 192 (470)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCC
Confidence 35699999999988888876 3478887 5555444333 33365 455666766553 33467999994
Q ss_pred -ccc--hh-------hcCCc------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcC
Q 043503 345 -MHV--LS-------NWIPD------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIG 398 (430)
Q Consensus 345 -~~~--L~-------~~~~d------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~G 398 (430)
+.. +. .|.++ .....+|..+.+.|||||+++.++-....++-.+.+..++++.+
T Consensus 193 CSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 193 CSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP 262 (470)
T ss_pred CCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence 311 11 11111 02367899999999999999887632222222334555666643
No 208
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.36 E-value=0.0029 Score=64.37 Aligned_cols=90 Identities=12% Similarity=0.127 Sum_probs=64.8
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhH
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSML 357 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l 357 (430)
.++||+||++|.|+..+.++|..|+++|. .+|.......+.|..+..+..++..+.+.+|.|+|-.+- . .
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~~V~AVD~---g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve-----~--P 282 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGMFVTAVDN---GPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE-----K--P 282 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCCEEEEEec---hhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc-----C--H
Confidence 45799999999999999999999999963 455566666777888887765543236789999993222 1 4
Q ss_pred HHHHHHHHHhccCC--cEEEEe
Q 043503 358 EFTLYDIYRLLRPG--GIFWLD 377 (430)
Q Consensus 358 ~~~L~ei~RvLrPG--G~lvl~ 377 (430)
..+..-|.+-|..| ..+++.
T Consensus 283 ~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 283 ARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred HHHHHHHHHHHhcCcccEEEEE
Confidence 56667777777666 345554
No 209
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.26 E-value=0.00099 Score=66.41 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=66.0
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----CC----eeEEEccccc-CC--CCCCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----GL----ISMHISVSQR-LP--FFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g~----i~~~~~d~~~-lp--f~d~sfDlV~~~ 345 (430)
++|||+=|=||.|+.+.+..|+ +|+.+ |.|..+++.++++ |. +.++..|+.. +. -..++||+|++-
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA~~v~~V--D~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGAKEVVSV--DSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTESEEEEE--ES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CceEEecCCCCHHHHHHHHCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 4569999999999999888886 67877 7788888777665 43 7888887543 22 124689999993
Q ss_pred cch---hhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 346 HVL---SNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 346 ~~L---~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
..- ..+.-......++..+.++|+|||.++++.
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 211 011111235678889999999999988753
No 210
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.0016 Score=64.01 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=60.4
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCCC-ce
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFEN-TL 339 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d~-sf 339 (430)
++++..........+||+||+|.|.++..|++++..|+++.+| ..+.+..+++ +.+.++.+|+-..++++. .+
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD--~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~ 96 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEID--RRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQP 96 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeC--HHHHHHHHHhcccccceEEEeCchhcCcchhhcCC
Confidence 4444444433334567999999999999999999999999555 5666555554 458899999988887654 67
Q ss_pred eEEEEccch
Q 043503 340 DIVHSMHVL 348 (430)
Q Consensus 340 DlV~~~~~L 348 (430)
+.|+++-..
T Consensus 97 ~~vVaNlPY 105 (259)
T COG0030 97 YKVVANLPY 105 (259)
T ss_pred CEEEEcCCC
Confidence 889986443
No 211
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.19 E-value=0.0044 Score=57.95 Aligned_cols=113 Identities=22% Similarity=0.330 Sum_probs=73.1
Q ss_pred EEEEEcCCccHHHHHHHHc--CCEEEEEecCCChh---HHHHHHhc-CC--eeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 279 IGLDIGGGTGTFAARMRER--NVTIITTSLNLDGP---FNSFIASR-GL--ISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~---~le~a~~r-g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
+++|||+|.|-=+..++-. ..+++.+ |.... +++.+... |+ +.++.+.++. +....+||+|++ +.+..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~Lv--Es~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~a-RAv~~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLV--ESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTA-RAVAP 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEE--ESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEE-ESSSS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEE--eCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEe-ehhcC
Confidence 5799999999666655544 6788887 54443 34443333 44 7888888877 555789999999 44422
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHH---HHHHHHHcCCEEEEEE
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNET---YVPMLDRIGFKKLRWN 405 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~---~~~ll~~~Gfk~l~~~ 405 (430)
+..++.-+...+++||.+++. .+....++ ....+...|.+.....
T Consensus 127 ------l~~l~~~~~~~l~~~G~~l~~----KG~~~~~El~~~~~~~~~~~~~~~~v~ 174 (184)
T PF02527_consen 127 ------LDKLLELARPLLKPGGRLLAY----KGPDAEEELEEAKKAWKKLGLKVLSVP 174 (184)
T ss_dssp ------HHHHHHHHGGGEEEEEEEEEE----ESS--HHHHHTHHHHHHCCCEEEEEEE
T ss_pred ------HHHHHHHHHHhcCCCCEEEEE----cCCChHHHHHHHHhHHHHhCCEEeeec
Confidence 678899999999999998874 33333333 4445556666655543
No 212
>PRK00536 speE spermidine synthase; Provisional
Probab=97.17 E-value=0.0027 Score=62.56 Aligned_cols=114 Identities=11% Similarity=0.024 Sum_probs=73.5
Q ss_pred CCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----------CCeeEEEcccccCCCCCCceeEEE
Q 043503 274 LGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----------GLISMHISVSQRLPFFENTLDIVH 343 (430)
Q Consensus 274 ~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~lpf~d~sfDlV~ 343 (430)
....++||=||+|.|..+.++.+...+|+-+|+ ++.+++.+++. ..+.++.. ..+ -..++||+|+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeI--D~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVII 144 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQA--DEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLII 144 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEEC--CHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEE
Confidence 345678899999999999999998668888854 57777777662 22444431 111 1236899999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCCcEEEEee--ccccCcCcHHHHHHHHHHcCCEEE
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR--FFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~--f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
.-. + . ...+.+.+.|+|+|||.++.-. .+. ..+....+.+.+++ .|+.+
T Consensus 145 vDs-~----~---~~~fy~~~~~~L~~~Gi~v~Qs~sp~~-~~~~~~~i~~~l~~-~F~~v 195 (262)
T PRK00536 145 CLQ-E----P---DIHKIDGLKRMLKEDGVFISVAKHPLL-EHVSMQNALKNMGD-FFSIA 195 (262)
T ss_pred EcC-C----C---ChHHHHHHHHhcCCCcEEEECCCCccc-CHHHHHHHHHHHHh-hCCce
Confidence 842 2 2 2457789999999999998732 111 11222344444555 57744
No 213
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.10 E-value=0.0051 Score=60.90 Aligned_cols=124 Identities=19% Similarity=0.067 Sum_probs=74.4
Q ss_pred CCCCCccEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChhHHHHHHhc--CCeeEE----Eccc--ccCCCCCCcee
Q 043503 272 KPLGTIRIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGPFNSFIASR--GLISMH----ISVS--QRLPFFENTLD 340 (430)
Q Consensus 272 ~p~~~ir~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~~le~a~~r--g~i~~~----~~d~--~~lpf~d~sfD 340 (430)
.+.-..++|||+|+|+|+-...+.+. + .+++.+ |.++.|++.++.- ...... .... +..++ ...|
T Consensus 29 ~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~v--d~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~D 104 (274)
T PF09243_consen 29 LPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCV--DRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF--PPDD 104 (274)
T ss_pred CcCCCCceEEEecCChHHHHHHHHHHhcCceeeeee--cCCHHHHHHHHHHHhcccccccchhhhhhhcccccC--CCCc
Confidence 34445567899999999866665554 2 355555 8888888765431 111100 0111 11222 2349
Q ss_pred EEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc-cCcCcHHHHHHHHHHcCCEEE
Q 043503 341 IVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC-FGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 341 lV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~-~~~~~~~~~~~ll~~~Gfk~l 402 (430)
+|+++++|....+ .....++..+.+.+.+ .++|.+.-. .+........+.+.+.|+.++
T Consensus 105 Lvi~s~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 105 LVIASYVLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVV 164 (274)
T ss_pred EEEEehhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceE
Confidence 9999999976444 6678888888888776 777755332 112233456666777777655
No 214
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.09 E-value=0.0066 Score=59.19 Aligned_cols=128 Identities=15% Similarity=0.124 Sum_probs=81.4
Q ss_pred CccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----------CCeeEEEcccccCC-CCCC-ceeE
Q 043503 276 TIRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----------GLISMHISVSQRLP-FFEN-TLDI 341 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~lp-f~d~-sfDl 341 (430)
..++||=||.|.|..+..+.+.. .+|+.+ |+++.+.+.+++- ..+.++.+|+..+- -..+ +||+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~V--EiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVV--EIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEE--ES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEE--ecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 45677999999999999999874 577777 5557777776542 24788888875432 2234 8999
Q ss_pred EEEccchhhcCCc--hhHHHHHHHHHHhccCCcEEEEeecc-ccCcCcHHHHHHHHHHcCCEEEEEEe
Q 043503 342 VHSMHVLSNWIPD--SMLEFTLYDIYRLLRPGGIFWLDRFF-CFGSQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 342 V~~~~~L~~~~~d--~~l~~~L~ei~RvLrPGG~lvl~~f~-~~~~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
|+.- ......+. -....+++.+.+.|+|||.+++..-. .........+.+.++.....+.....
T Consensus 154 Ii~D-~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~ 220 (246)
T PF01564_consen 154 IIVD-LTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTA 220 (246)
T ss_dssp EEEE-SSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred EEEe-CCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEE
Confidence 9983 22111111 11357899999999999999875311 11222345566677777665444443
No 215
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.08 E-value=0.0029 Score=63.00 Aligned_cols=100 Identities=18% Similarity=0.141 Sum_probs=70.4
Q ss_pred CCccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----------CCeeEEEcccccC-CCCCCceeE
Q 043503 275 GTIRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----------GLISMHISVSQRL-PFFENTLDI 341 (430)
Q Consensus 275 ~~ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~l-pf~d~sfDl 341 (430)
+..++||-||.|.|..+..+.+.. .+++.+ |+++..++.+++. ..+.++..|...+ .-...+||+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~V--EID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMV--EIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEE--EcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 334688999999999999999984 567777 5557888888765 1256777775443 223348999
Q ss_pred EEEccchhhcCC--chhHHHHHHHHHHhccCCcEEEEe
Q 043503 342 VHSMHVLSNWIP--DSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 342 V~~~~~L~~~~~--d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
|++- +...--+ .-....+++.+.|.|+++|.++.-
T Consensus 153 Ii~D-~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVD-STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEc-CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 9993 2222111 001367999999999999999886
No 216
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.02 E-value=0.0012 Score=61.53 Aligned_cols=98 Identities=16% Similarity=0.142 Sum_probs=63.0
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C---CeeEEEccc-ccCC---CCCCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G---LISMHISVS-QRLP---FFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~-~~lp---f~d~sfDlV~~~ 345 (430)
.++||+-||+|.++.+.+.||+ .|+.+ |.+......++++ + .+.++..|+ ..++ ....+||+|+.-
T Consensus 44 ~~vLDLFaGSGalGlEALSRGA~~v~fV--E~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 44 ARVLDLFAGSGALGLEALSRGAKSVVFV--EKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp -EEEETT-TTSHHHHHHHHTT-SEEEEE--ES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CeEEEcCCccCccHHHHHhcCCCeEEEE--ECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 3469999999999999999985 77777 5555555544443 3 266777774 2332 246899999996
Q ss_pred cchhhcCCchhHHHHHHHHH--HhccCCcEEEEeecc
Q 043503 346 HVLSNWIPDSMLEFTLYDIY--RLLRPGGIFWLDRFF 380 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~--RvLrPGG~lvl~~f~ 380 (430)
..... ......++..+. ..|+++|.+++.+..
T Consensus 122 PPY~~---~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 122 PPYAK---GLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp -STTS---CHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred CCccc---chHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 55522 211356777776 799999999997644
No 217
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.01 E-value=0.0017 Score=61.69 Aligned_cols=112 Identities=15% Similarity=0.230 Sum_probs=59.7
Q ss_pred HHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCE-EEEEecCCChhHHHHHH-----------hcCC----eeEEE
Q 043503 264 GIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVT-IITTSLNLDGPFNSFIA-----------SRGL----ISMHI 326 (430)
Q Consensus 264 ~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~-Vv~vdiD~s~~~le~a~-----------~rg~----i~~~~ 326 (430)
.+..+++....+.-.+.+|+|||.|......+.. +++ .+|+.+. +...+.|. ..|. +.+..
T Consensus 30 ~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~--~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~ 107 (205)
T PF08123_consen 30 FVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEIL--PELHDLAEELLEELKKRMKHYGKRPGKVELIH 107 (205)
T ss_dssp HHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-S--HHHHHHHHHHHHHHHHHHHHCTB---EEEEEC
T ss_pred HHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEec--hHHHHHHHHHHHHHHHHHHHhhcccccceeec
Confidence 3555555544444467899999999876666654 665 8888554 33222221 1122 66677
Q ss_pred cccccCCCCC---CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 327 SVSQRLPFFE---NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 327 ~d~~~lpf~d---~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
+|+...++.. ...|+|++++.. .++ .+...|.+...-||+|-+++-..-++
T Consensus 108 gdfl~~~~~~~~~s~AdvVf~Nn~~---F~~-~l~~~L~~~~~~lk~G~~IIs~~~~~ 161 (205)
T PF08123_consen 108 GDFLDPDFVKDIWSDADVVFVNNTC---FDP-DLNLALAELLLELKPGARIISTKPFC 161 (205)
T ss_dssp S-TTTHHHHHHHGHC-SEEEE--TT---T-H-HHHHHHHHHHTTS-TT-EEEESS-SS
T ss_pred cCccccHhHhhhhcCCCEEEEeccc---cCH-HHHHHHHHHHhcCCCCCEEEECCCcC
Confidence 7765433111 346999997665 122 36667788889999999887665554
No 218
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.98 E-value=0.0024 Score=63.99 Aligned_cols=79 Identities=19% Similarity=0.151 Sum_probs=56.3
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCC--CC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLP--FF 335 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lp--f~ 335 (430)
+++++..+......++||++||.|..+..+++. +.+|+++ |.++.+++.++++ +.+.++++++..+. .+
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~Vigi--D~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAI--DRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEE--cCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 344444333222346799999999999999988 3789988 6668888888765 35888888877654 22
Q ss_pred CC--ceeEEEEc
Q 043503 336 EN--TLDIVHSM 345 (430)
Q Consensus 336 d~--sfDlV~~~ 345 (430)
++ ++|.|++.
T Consensus 86 ~~~~~vDgIl~D 97 (296)
T PRK00050 86 EGLGKVDGILLD 97 (296)
T ss_pred cCCCccCEEEEC
Confidence 22 79999984
No 219
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.015 Score=59.74 Aligned_cols=145 Identities=17% Similarity=0.189 Sum_probs=88.4
Q ss_pred eeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc----CCEEEEEecCCChhHHH----HHHhcCC--ee
Q 043503 254 WLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER----NVTIITTSLNLDGPFNS----FIASRGL--IS 323 (430)
Q Consensus 254 ~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~----g~~Vv~vdiD~s~~~le----~a~~rg~--i~ 323 (430)
|+..+...+.....++...++.. |||+.++.|.=+..+++. +..|+++ |.++.-+. .++.-|. +.
T Consensus 137 ~~~vQd~sS~l~a~~L~p~pge~---VlD~cAAPGGKTthla~~~~~~~~iV~A~--D~~~~Rl~~l~~nl~RlG~~nv~ 211 (355)
T COG0144 137 LIYVQDEASQLPALVLDPKPGER---VLDLCAAPGGKTTHLAELMENEGAIVVAV--DVSPKRLKRLRENLKRLGVRNVI 211 (355)
T ss_pred EEEEcCHHHHHHHHHcCCCCcCE---EEEECCCCCCHHHHHHHhcCCCCceEEEE--cCCHHHHHHHHHHHHHcCCCceE
Confidence 34456656666667777666644 599999999777777766 4566888 55554333 3333365 45
Q ss_pred EEEcccccCC--CC-CCceeEEEEc------cchhh-------cCCc------hhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 324 MHISVSQRLP--FF-ENTLDIVHSM------HVLSN-------WIPD------SMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 324 ~~~~d~~~lp--f~-d~sfDlV~~~------~~L~~-------~~~d------~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
....|...++ .+ .+.||.|+.- .+++. +.+. .....+|....++|||||.++.++=..
T Consensus 212 ~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 212 VVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred EEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 6667766654 22 2359999981 22211 1111 134568999999999999999986222
Q ss_pred cCcCcHHHHHHHHHHc-CCEEEE
Q 043503 382 FGSQLNETYVPMLDRI-GFKKLR 403 (430)
Q Consensus 382 ~~~~~~~~~~~ll~~~-Gfk~l~ 403 (430)
..++-...+..++++. +|+...
T Consensus 292 ~~eENE~vV~~~L~~~~~~~~~~ 314 (355)
T COG0144 292 TPEENEEVVERFLERHPDFELEP 314 (355)
T ss_pred chhcCHHHHHHHHHhCCCceeec
Confidence 2233334566666664 565554
No 220
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.91 E-value=0.0055 Score=64.54 Aligned_cols=99 Identities=19% Similarity=0.275 Sum_probs=77.6
Q ss_pred EEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhcC-----CeeEEEcccccCCCCCCceeEEEEccchhhcC
Q 043503 279 IGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASRG-----LISMHISVSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~rg-----~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
++|-+|||.-.+...+-+.|. .|+.+ |.|...++....++ ...+...|...+.|++.+||+|+.-..+++..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~i--D~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNI--DSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceec--cccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 459999999999999988875 45554 77777666655443 37788889999999999999999988887655
Q ss_pred Cch-------hHHHHHHHHHHhccCCcEEEEeec
Q 043503 353 PDS-------MLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 353 ~d~-------~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
.++ .....+.++.|+|+|||+++...+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 432 234578999999999999877665
No 221
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.89 E-value=0.034 Score=53.43 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=79.4
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCCh----hHHHHHHhcCCeeEEEcccccCC---CCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDG----PFNSFIASRGLISMHISVSQRLP---FFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~----~~le~a~~rg~i~~~~~d~~~lp---f~d~sfDlV~~~~~ 347 (430)
..||-+|..+|+....+++- ...|+++ +.++ ..+..|++|.++--+..|+..-. .--+.+|+|++ .+
T Consensus 75 skVLYLGAasGTTVSHvSDIvg~~G~VYaV--Efs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~-DV 151 (229)
T PF01269_consen 75 SKVLYLGAASGTTVSHVSDIVGPDGVVYAV--EFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQ-DV 151 (229)
T ss_dssp -EEEEETTTTSHHHHHHHHHHTTTSEEEEE--ESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEE-E-
T ss_pred CEEEEecccCCCccchhhhccCCCCcEEEE--EecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEe-cC
Confidence 45699999999999999887 4588888 6665 45677888877655666664311 12348999999 33
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeecc-ccCc-----CcHHHHHHHHHHcCCEEEEEE
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF-CFGS-----QLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~-~~~~-----~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
- .++ ..+-++.++...||+||.++++--. |-+. ..+..-.+.+++.||++++..
T Consensus 152 a---Qp~-Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i 211 (229)
T PF01269_consen 152 A---QPD-QARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQI 211 (229)
T ss_dssp S---STT-HHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred C---ChH-HHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEe
Confidence 3 344 4778899999999999999885211 1111 122333455677899987655
No 222
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.85 E-value=0.0053 Score=61.27 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=58.9
Q ss_pred CccEEEEEcCCccHHHHHHHH---------cCCEEEEEecCCChhHHHHHHhc----CC----eeEEEcccccCC-CC-C
Q 043503 276 TIRIGLDIGGGTGTFAARMRE---------RNVTIITTSLNLDGPFNSFIASR----GL----ISMHISVSQRLP-FF-E 336 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~---------~g~~Vv~vdiD~s~~~le~a~~r----g~----i~~~~~d~~~lp-f~-d 336 (430)
...+|+|.+||+|.|...+.+ ...+++|.|+| +.+...++.+ |. ..+..+|.-..+ .. .
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~--~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEID--PEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES---HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCc--HHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 334579999999999888876 36788888555 5544444322 22 346677653333 22 5
Q ss_pred CceeEEEEccchhhc--CC----------------chhHHHHHHHHHHhccCCcEEEE
Q 043503 337 NTLDIVHSMHVLSNW--IP----------------DSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~--~~----------------d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
..||+|+++..+... .. ...-..++..+.+.|++||++.+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence 789999997555432 10 00112478889999999998644
No 223
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.85 E-value=0.012 Score=58.99 Aligned_cols=145 Identities=19% Similarity=0.195 Sum_probs=87.9
Q ss_pred hHHHHHHHccCCC-----CCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHH---HHHH----hcCC--------
Q 043503 262 DYGIDQVLSMKPL-----GTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFN---SFIA----SRGL-------- 321 (430)
Q Consensus 262 ~~~id~lL~~~p~-----~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~l---e~a~----~rg~-------- 321 (430)
...|+++-...|. .++ .+|--|||.|+++..++..|.++-|- +.|.-|+ .++. ..+.
T Consensus 132 kpii~~l~~lfp~~~~~r~ki-~iLvPGaGlGRLa~dla~~G~~~qGN--EfSy~Mli~S~FiLN~~~~~nq~~IYPfIh 208 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKI-RILVPGAGLGRLAYDLACLGFKCQGN--EFSYFMLICSSFILNYCKQENQFTIYPFIH 208 (369)
T ss_pred hhHHHHHHhhCCCccccccCc-eEEecCCCchhHHHHHHHhccccccc--HHHHHHHHHHHHHHHhhccCCcEEEEeeee
Confidence 3445666555543 233 45999999999999999998776654 4444443 2222 1111
Q ss_pred -------------------------------eeEEEcccccCC---CCCCceeEEEEccchhhcCCchhHHHHHHHHHHh
Q 043503 322 -------------------------------ISMHISVSQRLP---FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRL 367 (430)
Q Consensus 322 -------------------------------i~~~~~d~~~lp---f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~Rv 367 (430)
..+..||+-+.- -..++||+|+..+.+.- ....-.++..|..+
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT---a~NileYi~tI~~i 285 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT---AHNILEYIDTIYKI 285 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec---hHHHHHHHHHHHHh
Confidence 111122221111 01236999998755532 22477899999999
Q ss_pred ccCCcEEE-----EeeccccCc---C-----cHHHHHHHHHHcCCEEEEEEecccccCC
Q 043503 368 LRPGGIFW-----LDRFFCFGS---Q-----LNETYVPMLDRIGFKKLRWNVGMKLDRG 413 (430)
Q Consensus 368 LrPGG~lv-----l~~f~~~~~---~-----~~~~~~~ll~~~Gfk~l~~~~~~k~~~g 413 (430)
|+|||+++ +.||-.... + ..+++..+....||++++.. +.....+
T Consensus 286 Lk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~-~Idt~Y~ 343 (369)
T KOG2798|consen 286 LKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER-GIDTTYG 343 (369)
T ss_pred ccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee-eeecccC
Confidence 99999985 444443221 1 24678889999999999876 4443333
No 224
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.73 E-value=0.0062 Score=67.95 Aligned_cols=98 Identities=16% Similarity=0.047 Sum_probs=65.4
Q ss_pred cEEEEEcCCccHHHHHHHHc--------------------------------------------CCEEEEEecCCChhHH
Q 043503 278 RIGLDIGGGTGTFAARMRER--------------------------------------------NVTIITTSLNLDGPFN 313 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--------------------------------------------g~~Vv~vdiD~s~~~l 313 (430)
..++|.+||+|++.++.+.. ..+++|+ |+++.++
T Consensus 192 ~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~--Did~~av 269 (702)
T PRK11783 192 TPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGS--DIDPRVI 269 (702)
T ss_pred CeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEE--ECCHHHH
Confidence 45799999999999887652 1257787 5567777
Q ss_pred HHHHhc----CC---eeEEEcccccCCCC--CCceeEEEEccchhhcCC-chhHHHHHHHHHHhc---cCCcEEEEe
Q 043503 314 SFIASR----GL---ISMHISVSQRLPFF--ENTLDIVHSMHVLSNWIP-DSMLEFTLYDIYRLL---RPGGIFWLD 377 (430)
Q Consensus 314 e~a~~r----g~---i~~~~~d~~~lpf~--d~sfDlV~~~~~L~~~~~-d~~l~~~L~ei~RvL---rPGG~lvl~ 377 (430)
+.|+++ |. +.+..+|+.+++.+ .++||+|+++.....-+. ...+..+..++.+.+ .+|+.+++.
T Consensus 270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ll 346 (702)
T PRK11783 270 QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALF 346 (702)
T ss_pred HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 766654 54 78889999887644 357999999866533222 223444444444444 489888764
No 225
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.72 E-value=0.012 Score=56.43 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=79.7
Q ss_pred cEEEEEcCCccHHHHHHH--HcCCEEEEEecCCC-hhHHHHHHhc-CC--eeEEEcccccCCCCCCc-eeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMR--ERNVTIITTSLNLD-GPFNSFIASR-GL--ISMHISVSQRLPFFENT-LDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La--~~g~~Vv~vdiD~s-~~~le~a~~r-g~--i~~~~~d~~~lpf~d~s-fDlV~~~~~L~~ 350 (430)
.+++|||+|.|-=+..++ ..+.+|+-+|...- ..+++.+... |+ +.++++.++.+.- +.. ||+|.+ +.+..
T Consensus 69 ~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~-~~~~~D~vts-RAva~ 146 (215)
T COG0357 69 KRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ-EKKQYDVVTS-RAVAS 146 (215)
T ss_pred CEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc-ccccCcEEEe-ehccc
Confidence 567999999997776665 33666776643321 2456655544 44 7888888888762 223 999999 44422
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEe
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
+..++.=+...+++||.++...+.... +............|+.+.+...
T Consensus 147 ------L~~l~e~~~pllk~~g~~~~~k~~~~~-~e~~e~~~a~~~~~~~~~~~~~ 195 (215)
T COG0357 147 ------LNVLLELCLPLLKVGGGFLAYKGLAGK-DELPEAEKAILPLGGQVEKVFS 195 (215)
T ss_pred ------hHHHHHHHHHhcccCCcchhhhHHhhh-hhHHHHHHHHHhhcCcEEEEEE
Confidence 667788888999999998765444322 2334566677778888776553
No 226
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.69 E-value=0.017 Score=59.52 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=67.9
Q ss_pred EEEEEcCCccHHHHHHHHcCC-----------------------------------------EEEEEecCCChhHHHHHH
Q 043503 279 IGLDIGGGTGTFAARMRERNV-----------------------------------------TIITTSLNLDGPFNSFIA 317 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~-----------------------------------------~Vv~vdiD~s~~~le~a~ 317 (430)
..+|-=||+|+++++.|..+. .++|+ |+++.+++.|+
T Consensus 194 pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~--Did~r~i~~Ak 271 (381)
T COG0116 194 PLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGS--DIDPRHIEGAK 271 (381)
T ss_pred ccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEe--cCCHHHHHHHH
Confidence 349999999999999887753 25677 56678887776
Q ss_pred hc----CC---eeEEEcccccCCCCCCceeEEEEccchhhcCCc-hhHH----HHHHHHHHhccCCcEEEEee
Q 043503 318 SR----GL---ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPD-SMLE----FTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 318 ~r----g~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d-~~l~----~~L~ei~RvLrPGG~lvl~~ 378 (430)
.+ |+ |.|.++|+..++-+-+.+|+|+|+....-=+.+ .... .+...+.+.++--+.++++.
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 55 44 999999999988443789999997554322222 1222 34445556667667777753
No 227
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.65 E-value=0.0067 Score=62.76 Aligned_cols=90 Identities=8% Similarity=0.066 Sum_probs=64.8
Q ss_pred EEEEEcCCccHHHHHHHHc--C-CEEEEEecCCChhHHHHHHh----cCC--eeEEEcccccCC-CCCCceeEEEEccch
Q 043503 279 IGLDIGGGTGTFAARMRER--N-VTIITTSLNLDGPFNSFIAS----RGL--ISMHISVSQRLP-FFENTLDIVHSMHVL 348 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~--g-~~Vv~vdiD~s~~~le~a~~----rg~--i~~~~~d~~~lp-f~d~sfDlV~~~~~L 348 (430)
+|||+.||+|..+++++.+ | ..|+++ |+++...+.+++ ++. +.++..|+..+- .....||+|..-. +
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~n--D~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREVFAN--DINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEEEEE--eCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 4699999999999999987 4 477887 555555555443 343 667777776542 1235799999843 3
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
. . ...++..+.+.+++||+++++
T Consensus 124 G--s----~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 G--T----PAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C--C----cHHHHHHHHHhcccCCEEEEE
Confidence 1 2 346899999999999999986
No 228
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.59 E-value=0.004 Score=57.13 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=44.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCC--CCCCc-eeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLP--FFENT-LDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lp--f~d~s-fDlV~~~~ 346 (430)
++|+|+.||.|..++.+|+...+|+++|+ ++..++.++.+ |. +.++++|+..+. +.... +|+|+++.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidi--d~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDI--DPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES---HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEEC--CHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 36899999999999999999989999955 46666666554 53 899999975542 22222 89999853
No 229
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.55 E-value=0.014 Score=54.57 Aligned_cols=99 Identities=16% Similarity=0.218 Sum_probs=62.8
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc-------CCeeEEEcccccC-CCCCC--ceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR-------GLISMHISVSQRL-PFFEN--TLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~~~l-pf~d~--sfDlV~~~~ 346 (430)
.++||+=+|+|.++.+.+.||+ .++.+ |.+......++++ +...++..|+... +-... +||+|+.-.
T Consensus 45 ~~~LDlFAGSGaLGlEAlSRGA~~~~~v--E~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 45 ARVLDLFAGSGALGLEALSRGAARVVFV--EKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CEEEEecCCccHhHHHHHhCCCceEEEE--ecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 4569999999999999999975 56666 4445544444443 3467777776533 21222 499999976
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.+..-.-+........+-...|+|||.+++.+
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 66321111012222223567799999999864
No 230
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.014 Score=56.39 Aligned_cols=121 Identities=19% Similarity=0.246 Sum_probs=76.9
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHH-HHhcCC-eeEEEcccccCC---CCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSF-IASRGL-ISMHISVSQRLP---FFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~-a~~rg~-i~~~~~d~~~lp---f~d~sfDlV~~~~~L~~~ 351 (430)
+++||+|.-||.|+..+.++|+ .|+++|+-. ..+.. .+..-. +.+...+++.+. +. +..|+++|--.+
T Consensus 81 kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~--~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSF--- 154 (245)
T COG1189 81 KVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGY--GQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSF--- 154 (245)
T ss_pred CEEEEecCCCccHHHHHHHcCCcEEEEEEccC--CccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeeh---
Confidence 5689999999999999999965 778885543 22222 222222 333334555443 22 367999996444
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEee--ccc------------cCcC----cHHHHHHHHHHcCCEEEEEEec
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDR--FFC------------FGSQ----LNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~--f~~------------~~~~----~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
+ .+..+|..+..+++|||.++.-- -|. .++. ....+...+...||.+......
T Consensus 155 I---SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~S 225 (245)
T COG1189 155 I---SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKS 225 (245)
T ss_pred h---hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEcc
Confidence 3 26789999999999999876420 000 0011 1234667778889998876543
No 231
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.49 E-value=0.024 Score=57.45 Aligned_cols=108 Identities=11% Similarity=0.121 Sum_probs=68.7
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc------CCEEEEEecCCChhHHHHHHhc----CC--ee--EEEcccc
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER------NVTIITTSLNLDGPFNSFIASR----GL--IS--MHISVSQ 330 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~------g~~Vv~vdiD~s~~~le~a~~r----g~--i~--~~~~d~~ 330 (430)
...+...++.+. +++|+|||+|.=+..|.+. .++.+.+ |+|..+++.+.++ .. +. -+++|..
T Consensus 67 ~~~Ia~~i~~~~--~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~pl--DIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~ 142 (319)
T TIGR03439 67 SSDIAASIPSGS--MLVELGSGNLRKVGILLEALERQKKSVDYYAL--DVSRSELQRTLAELPLGNFSHVRCAGLLGTYD 142 (319)
T ss_pred HHHHHHhcCCCC--EEEEECCCchHHHHHHHHHHHhcCCCceEEEE--ECCHHHHHHHHHhhhhccCCCeEEEEEEecHH
Confidence 444555555433 4699999999765554443 3556666 8888888776543 11 33 3566553
Q ss_pred c----CCC--CCCceeEEEEc-cchhhcCCchhHHHHHHHHHH-hccCCcEEEEe
Q 043503 331 R----LPF--FENTLDIVHSM-HVLSNWIPDSMLEFTLYDIYR-LLRPGGIFWLD 377 (430)
Q Consensus 331 ~----lpf--~d~sfDlV~~~-~~L~~~~~d~~l~~~L~ei~R-vLrPGG~lvl~ 377 (430)
. ++- ......+|+.. ..+.++.++ ....+|+++.+ .|+|||.|++.
T Consensus 143 ~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~-ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 143 DGLAWLKRPENRSRPTTILWLGSSIGNFSRP-EAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred HHHhhcccccccCCccEEEEeCccccCCCHH-HHHHHHHHHHHhhCCCCCEEEEe
Confidence 3 221 12335666654 567775554 47789999999 99999999884
No 232
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.45 E-value=0.016 Score=62.45 Aligned_cols=70 Identities=17% Similarity=0.130 Sum_probs=42.6
Q ss_pred cEEEEEcCCccHHHHHHHHcC----------CEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccC-----CCCC
Q 043503 278 RIGLDIGGGTGTFAARMRERN----------VTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRL-----PFFE 336 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g----------~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~l-----pf~d 336 (430)
.+|||.|||+|.|...++++. ..++++ |+++..++.++.+ + .+.+...|.... .-..
T Consensus 33 ~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~--DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 33 TKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFA--DIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeee--chhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 467999999999998887651 345666 5556666555433 2 133443432211 1112
Q ss_pred CceeEEEEccchh
Q 043503 337 NTLDIVHSMHVLS 349 (430)
Q Consensus 337 ~sfDlV~~~~~L~ 349 (430)
+.||+|+++....
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 5799999976554
No 233
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.36 E-value=0.011 Score=57.91 Aligned_cols=93 Identities=17% Similarity=0.216 Sum_probs=63.8
Q ss_pred CccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCC---CceeEEEEccch
Q 043503 276 TIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFE---NTLDIVHSMHVL 348 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d---~sfDlV~~~~~L 348 (430)
....|||+|+|+|.++..|++.+..++++++ ++.+.+...++ +.+.++.+|+..+..++ +....|+++-..
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~--d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEI--DPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEES--SHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEEEEETG
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecC--cHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEEEEEecc
Confidence 3456799999999999999999999999855 46777766663 55899999998887654 456677775433
Q ss_pred hhcCCchhHHHHHHHHHHhccC---CcEEEE
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRP---GGIFWL 376 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrP---GG~lvl 376 (430)
+ + -..++..+...-+. ...+++
T Consensus 108 -~-i----s~~il~~ll~~~~~g~~~~~l~v 132 (262)
T PF00398_consen 108 -N-I----SSPILRKLLELYRFGRVRMVLMV 132 (262)
T ss_dssp -T-G----HHHHHHHHHHHGGGCEEEEEEEE
T ss_pred -c-c----hHHHHHHHhhcccccccceEEEE
Confidence 2 2 33455555554343 244444
No 234
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.29 E-value=0.039 Score=51.99 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=68.9
Q ss_pred EEEEEcCCccHHHHHHHHc-CC--EEEEEecCCC--------hhHHHHHHhcCC--eeEEEcccccCCCCCCceeEEEE-
Q 043503 279 IGLDIGGGTGTFAARMRER-NV--TIITTSLNLD--------GPFNSFIASRGL--ISMHISVSQRLPFFENTLDIVHS- 344 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~-g~--~Vv~vdiD~s--------~~~le~a~~rg~--i~~~~~d~~~lpf~d~sfDlV~~- 344 (430)
+|+|+=.|.|.|+..++.. |. .|+++-.+-. +.+...+++... +..+-.+.-.+. +.+..|++..
T Consensus 51 tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~~~~~ 129 (238)
T COG4798 51 TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDLVPTA 129 (238)
T ss_pred EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccccccc
Confidence 4699999999999998876 32 4555422211 111122222211 222222222222 2333444443
Q ss_pred -------ccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC-cC----------cHHHHHHHHHHcCCEEEEEE
Q 043503 345 -------MHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG-SQ----------LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 345 -------~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~-~~----------~~~~~~~ll~~~Gfk~l~~~ 405 (430)
...+ ......++..++++.|||||.+.+.+..... .. .........+..||+.....
T Consensus 130 ~~yhdmh~k~i----~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS 204 (238)
T COG4798 130 QNYHDMHNKNI----HPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAES 204 (238)
T ss_pred hhhhhhhcccc----CcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeee
Confidence 2222 2335788999999999999998876554322 21 12346778889999977543
No 235
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.22 E-value=0.092 Score=49.93 Aligned_cols=115 Identities=14% Similarity=0.085 Sum_probs=73.4
Q ss_pred EEEEcCCccHHHHHHHHcCC--EEEEEecCCChhHHHHHHhc----CC---eeEEEccc-ccCCCCCCceeEEEEccchh
Q 043503 280 GLDIGGGTGTFAARMRERNV--TIITTSLNLDGPFNSFIASR----GL---ISMHISVS-QRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 280 VLDIGcGtG~~a~~La~~g~--~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~-~~lpf~d~sfDlV~~~~~L~ 349 (430)
|.||||--|.++.+|.++|. +++++ |+++.-++.|+++ |+ +.+..+|. +.++ +.+..|.|+...+-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~--DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAV--DINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEE--ESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEE--eCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCH
Confidence 58999999999999999975 67777 5556556555543 43 88888884 5554 223368877744332
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEec
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
. ....+|.+....++....|++.- ......+...+.+.||.+++....
T Consensus 78 ~-----lI~~ILe~~~~~~~~~~~lILqP-----~~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 78 E-----LIIEILEAGPEKLSSAKRLILQP-----NTHAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp H-----HHHHHHHHTGGGGTT--EEEEEE-----SS-HHHHHHHHHHTTEEEEEEEEE
T ss_pred H-----HHHHHHHhhHHHhccCCeEEEeC-----CCChHHHHHHHHHCCCEEEEeEEE
Confidence 2 36678888888887777777741 223567888999999998876543
No 236
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.18 E-value=0.017 Score=54.14 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=55.1
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccC--------CCCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRL--------PFFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l--------pf~d~sfDlV~~~~ 346 (430)
.+|||+||-.|+|+.-..++ +..|.|+|+-. ...-+|...+...|..+- ..++...|+|++-.
T Consensus 71 ~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDM 144 (232)
T KOG4589|consen 71 DTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH------IEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDM 144 (232)
T ss_pred CEEEEccCCCChHHHHHHHhhCCCceEEEEeeee------ccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEecc
Confidence 34699999999999998888 45677776521 111223322222232220 13578899999832
Q ss_pred c--------hhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 347 V--------LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 347 ~--------L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
. ..|...-+....++.-....++|+|.|+.--+.
T Consensus 145 apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232)
T KOG4589|consen 145 APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232)
T ss_pred CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence 1 112111112233444455677899999886544
No 237
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.012 Score=52.96 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=55.1
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcC----C-eeEEEcccccCCCCCCc
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRG----L-ISMHISVSQRLPFFENT 338 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg----~-i~~~~~d~~~lpf~d~s 338 (430)
|..-..-+.++.+ +|+|||.|-+....+-- .-.|+|+|+ ++..++.+..+. + +.+.+.+...+-+..+.
T Consensus 40 Ih~TygdiEgkkl---~DLgcgcGmLs~a~sm~~~e~vlGfDI--dpeALEIf~rNaeEfEvqidlLqcdildle~~~g~ 114 (185)
T KOG3420|consen 40 IHNTYGDIEGKKL---KDLGCGCGMLSIAFSMPKNESVLGFDI--DPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGI 114 (185)
T ss_pred HHhhhccccCcch---hhhcCchhhhHHHhhcCCCceEEeeec--CHHHHHHHhhchHHhhhhhheeeeeccchhccCCe
Confidence 3333333455555 99999999988555444 567888855 466677665542 2 67788888777777789
Q ss_pred eeEEEEccchh
Q 043503 339 LDIVHSMHVLS 349 (430)
Q Consensus 339 fDlV~~~~~L~ 349 (430)
||.++.+..+.
T Consensus 115 fDtaviNppFG 125 (185)
T KOG3420|consen 115 FDTAVINPPFG 125 (185)
T ss_pred EeeEEecCCCC
Confidence 99999976664
No 238
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.17 Score=48.12 Aligned_cols=151 Identities=18% Similarity=0.179 Sum_probs=92.9
Q ss_pred cccccceeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-C-CEEEEEecCCCh----hHHHHHHhcCC
Q 043503 248 GREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-N-VTIITTSLNLDG----PFNSFIASRGL 321 (430)
Q Consensus 248 ~~e~~~~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~----~~le~a~~rg~ 321 (430)
+.+...|.-.+..+...|-.=+..+|......||=+|.-+|+....+++- + ..++++ +.++ ..+..+.+|.+
T Consensus 48 ~~eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaV--Efs~R~~reLl~~a~~R~N 125 (231)
T COG1889 48 GEEYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAV--EFSPRPMRELLDVAEKRPN 125 (231)
T ss_pred CcceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEE--EecchhHHHHHHHHHhCCC
Confidence 34444453333334433333334344444556799999999999999887 3 567887 4444 34567778877
Q ss_pred eeEEEcccccC---CCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc-c-----cCcCcHHHHHH
Q 043503 322 ISMHISVSQRL---PFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF-C-----FGSQLNETYVP 392 (430)
Q Consensus 322 i~~~~~d~~~l---pf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~-~-----~~~~~~~~~~~ 392 (430)
+--+..|+..- .+-=+..|+|.+ .+- .++ +.+-+..++...|++||++++.-=. + ...+.+++-.+
T Consensus 126 i~PIL~DA~~P~~Y~~~Ve~VDviy~-DVA---Qp~-Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~ 200 (231)
T COG1889 126 IIPILEDARKPEKYRHLVEKVDVIYQ-DVA---QPN-QAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVE 200 (231)
T ss_pred ceeeecccCCcHHhhhhcccccEEEE-ecC---Cch-HHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHH
Confidence 55566666431 122356899998 222 344 4777899999999999987764211 1 11113333445
Q ss_pred HHHHcCCEEEEEE
Q 043503 393 MLDRIGFKKLRWN 405 (430)
Q Consensus 393 ll~~~Gfk~l~~~ 405 (430)
.++..||+++...
T Consensus 201 kL~~~~f~i~e~~ 213 (231)
T COG1889 201 KLEEGGFEILEVV 213 (231)
T ss_pred HHHhcCceeeEEe
Confidence 6778899988754
No 239
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.09 E-value=0.0013 Score=59.56 Aligned_cols=55 Identities=27% Similarity=0.386 Sum_probs=44.4
Q ss_pred eeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 322 ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 322 i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+.+++......+|.+++.|+|.+.++++|+.-+ ....++++++|+|||||++-+.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~-Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYD-EGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCcCcEEEEE
Confidence 344444455667999999999999999997654 4778999999999999999764
No 240
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.04 E-value=0.03 Score=53.54 Aligned_cols=105 Identities=14% Similarity=0.073 Sum_probs=69.4
Q ss_pred cEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHhcCC-----eeEEEccccc-CC-CCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIASRGL-----ISMHISVSQR-LP-FFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~rg~-----i~~~~~d~~~-lp-f~d~sfDlV~~~~~L~ 349 (430)
++||.||-|-|.....+.++. ...+.+ +..+...+..+..|- +-++.+-.++ ++ ++|+.||-|.--..-.
T Consensus 103 grvLnVGFGMgIidT~iQe~~p~~H~Ii--E~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e 180 (271)
T KOG1709|consen 103 GRVLNVGFGMGIIDTFIQEAPPDEHWII--EAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYSE 180 (271)
T ss_pred ceEEEeccchHHHHHHHhhcCCcceEEE--ecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechhh
Confidence 456999999999999998883 222223 666777777766543 5555554433 22 5689999999833222
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcH
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLN 387 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~ 387 (430)
+ .. ++..+.+.+.|+|||+|+|-+..-++-+..+.
T Consensus 181 ~-yE--dl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~ 215 (271)
T KOG1709|consen 181 L-YE--DLRHFHQHVVRLLKPEGVFSYFNGLGADNLMF 215 (271)
T ss_pred H-HH--HHHHHHHHHhhhcCCCceEEEecCcccchhhh
Confidence 2 22 37788899999999999986544444443333
No 241
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.93 E-value=0.0041 Score=51.94 Aligned_cols=94 Identities=16% Similarity=0.176 Sum_probs=39.6
Q ss_pred EEEcCCccHHHHHHHHc---C--CEEEEEecCCC-hhHHHHHHhc---CCeeEEEcccccC-C-CCCCceeEEEEccchh
Q 043503 281 LDIGGGTGTFAARMRER---N--VTIITTSLNLD-GPFNSFIASR---GLISMHISVSQRL-P-FFENTLDIVHSMHVLS 349 (430)
Q Consensus 281 LDIGcGtG~~a~~La~~---g--~~Vv~vdiD~s-~~~le~a~~r---g~i~~~~~d~~~l-p-f~d~sfDlV~~~~~L~ 349 (430)
|++|+..|..+..+++. + .+++++|.... +...+.+++. ..+.++.++.... + ++++++|+|+.- .-+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iD-g~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFID-GDH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEE-S--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEEC-CCC
Confidence 68999999888887764 2 36888866542 1233333332 4488888876432 2 336789999983 221
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
. .......+..+.+.|+|||.+++.+
T Consensus 80 ~---~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 S---YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C---HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 1 1236678889999999999999865
No 242
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.91 E-value=0.025 Score=53.29 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=58.8
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCCh--hHHHHHHhcCC-eeEEEcccccCCCCCCceeEEEEccchhhcCC
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDG--PFNSFIASRGL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~--~~le~a~~rg~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~ 353 (430)
++|||+|.|+|..++..+..|. .|+..|+|+.. ...-+++.+|. +.+...|.-. .+..||+|+.+.++.+..
T Consensus 81 krVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~~~- 156 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYNHT- 156 (218)
T ss_pred ceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecCch-
Confidence 5679999999999998888865 56667555211 11123345565 5666665443 467899999988875422
Q ss_pred chhHHHHHHHHHHhccCCcEEEE
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
....++. +.+.|+..|.-++
T Consensus 157 --~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 157 --EADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred --HHHHHHH-HHHHHHhCCCEEE
Confidence 2455666 6666666555444
No 243
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.86 E-value=0.095 Score=48.15 Aligned_cols=120 Identities=14% Similarity=0.135 Sum_probs=81.8
Q ss_pred EcCCccHHHHHHHHc---CCEEEEEecCCChhHH----------HHHHhcCCeeEEEcccccCC----CCCCceeEEEEc
Q 043503 283 IGGGTGTFAARMRER---NVTIITTSLNLDGPFN----------SFIASRGLISMHISVSQRLP----FFENTLDIVHSM 345 (430)
Q Consensus 283 IGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~l----------e~a~~rg~i~~~~~d~~~lp----f~d~sfDlV~~~ 345 (430)
||=|.=+|+..|++. +..++++..|..+... +..++.|..-.+-.|+..+. ...+.||.|+-+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 677777899999887 4578888777554322 22233455444455777765 256889999997
Q ss_pred cchhhcC----------CchhHHHHHHHHHHhccCCcEEEEeeccccCcC-cHHHHHHHHHHcCCEEEEE
Q 043503 346 HVLSNWI----------PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-LNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 346 ~~L~~~~----------~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-~~~~~~~ll~~~Gfk~l~~ 404 (430)
+...... ....+..++..+.++|+++|.+.++..- +.. ..-.+.++.++.||...+.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~--~~py~~W~i~~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD--GQPYDSWNIEELAAEAGLVLVRK 150 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC--CCCCccccHHHHHHhcCCEEEEE
Confidence 5542200 1235677899999999999999998633 332 2345778999999998764
No 244
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.77 E-value=0.022 Score=53.33 Aligned_cols=92 Identities=13% Similarity=0.177 Sum_probs=64.8
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccchhhcC
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
++.|+|.|+|.++...+...-+|+++..| +.....|.++ |. +.++.+|+....| ...|+|+| ..+....
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rViAiE~d--Pk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvic-EmlDTaL 109 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERVIAIEKD--PKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVIC-EMLDTAL 109 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceEEEEecC--cHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHH-HHhhHHh
Confidence 35999999999998888877789988544 5555566665 33 7788899988887 45799999 3333222
Q ss_pred CchhHHHHHHHHHHhccCCcEEE
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lv 375 (430)
-++..-..+..+...||-.+.++
T Consensus 110 i~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hcccccHHHHHHHHHhhcCCccc
Confidence 22224456777777888888764
No 245
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.33 E-value=0.05 Score=54.14 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=81.5
Q ss_pred hhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHH----hcCC--eeEEEccccc
Q 043503 261 LDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIA----SRGL--ISMHISVSQR 331 (430)
Q Consensus 261 ~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~----~rg~--i~~~~~d~~~ 331 (430)
........+...++.. |||+.++.|.=+..+++. ...+++. |++..-+.... .-|. +.....|...
T Consensus 73 sS~l~~~~L~~~~~~~---VLD~CAapGgKt~~la~~~~~~g~i~A~--D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~ 147 (283)
T PF01189_consen 73 SSQLVALALDPQPGER---VLDMCAAPGGKTTHLAELMGNKGEIVAN--DISPKRLKRLKENLKRLGVFNVIVINADARK 147 (283)
T ss_dssp HHHHHHHHHTTTTTSE---EEESSCTTSHHHHHHHHHTTTTSEEEEE--ESSHHHHHHHHHHHHHTT-SSEEEEESHHHH
T ss_pred cccccccccccccccc---ccccccCCCCceeeeeecccchhHHHHh--ccCHHHHHHHHHHHHhcCCceEEEEeecccc
Confidence 3444455555555544 599999999988888877 3688888 55554443333 3355 5555566655
Q ss_pred CC--CCCCceeEEEEc------cchhh-------cCCc------hhHHHHHHHHHHhc----cCCcEEEEeeccccCcCc
Q 043503 332 LP--FFENTLDIVHSM------HVLSN-------WIPD------SMLEFTLYDIYRLL----RPGGIFWLDRFFCFGSQL 386 (430)
Q Consensus 332 lp--f~d~sfDlV~~~------~~L~~-------~~~d------~~l~~~L~ei~RvL----rPGG~lvl~~f~~~~~~~ 386 (430)
.. .....||.|+.- .++.. +.+. .....+|..+.+.+ ||||+++.++=....++-
T Consensus 148 ~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eEN 227 (283)
T PF01189_consen 148 LDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEEN 227 (283)
T ss_dssp HHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGT
T ss_pred ccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHH
Confidence 42 234469999981 11111 0011 13456889999999 999999987622122222
Q ss_pred HHHHHHHHHHc-CCEEEE
Q 043503 387 NETYVPMLDRI-GFKKLR 403 (430)
Q Consensus 387 ~~~~~~ll~~~-Gfk~l~ 403 (430)
.+.+...+++. .|+.+.
T Consensus 228 E~vV~~fl~~~~~~~l~~ 245 (283)
T PF01189_consen 228 EEVVEKFLKRHPDFELVP 245 (283)
T ss_dssp HHHHHHHHHHSTSEEEEC
T ss_pred HHHHHHHHHhCCCcEEEe
Confidence 34455566665 555544
No 246
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.28 E-value=0.12 Score=51.09 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=62.7
Q ss_pred CccEEEEEcCCccH--HHHHHHHc---CCEEEEEecCCChhHHHHHH----hc--CCeeEEEcccccCC----------C
Q 043503 276 TIRIGLDIGGGTGT--FAARMRER---NVTIITTSLNLDGPFNSFIA----SR--GLISMHISVSQRLP----------F 334 (430)
Q Consensus 276 ~ir~VLDIGcGtG~--~a~~La~~---g~~Vv~vdiD~s~~~le~a~----~r--g~i~~~~~d~~~lp----------f 334 (430)
.|+..||||||-=+ ..-.++++ +.+|+-+|.| +..+..++ .. |...++.+|..+-. +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~D--Pvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDND--PVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESS--HHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCC--chHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 68888999999642 34445544 7899999665 44443222 22 33678888876522 1
Q ss_pred --CCCceeEEEEccchhhcCCc-hhHHHHHHHHHHhccCCcEEEEeeccccCcC-cHHHHHHHHHHcC
Q 043503 335 --FENTLDIVHSMHVLSNWIPD-SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-LNETYVPMLDRIG 398 (430)
Q Consensus 335 --~d~sfDlV~~~~~L~~~~~d-~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-~~~~~~~ll~~~G 398 (430)
.++.+ .|+...++ ||+++ +....++..+...|.||+++.++|....... ..+....++++.|
T Consensus 146 lD~~rPV-avll~~vL-h~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~ 211 (267)
T PF04672_consen 146 LDFDRPV-AVLLVAVL-HFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAG 211 (267)
T ss_dssp --TTS---EEEECT-G-GGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCC
T ss_pred CCCCCCe-eeeeeeee-ccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCC
Confidence 12333 34444677 55654 6799999999999999999999998753321 1234555555543
No 247
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.17 E-value=0.055 Score=47.94 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=43.0
Q ss_pred CCccEEEEEcCCccHHHHHHHH-----c-CCEEEEEecCCChhHHHHHHhc----C-----CeeEEEcccccCCCCCCce
Q 043503 275 GTIRIGLDIGGGTGTFAARMRE-----R-NVTIITTSLNLDGPFNSFIASR----G-----LISMHISVSQRLPFFENTL 339 (430)
Q Consensus 275 ~~ir~VLDIGcGtG~~a~~La~-----~-g~~Vv~vdiD~s~~~le~a~~r----g-----~i~~~~~d~~~lpf~d~sf 339 (430)
.....|+|+|||.|.++..++. . +.+|+++|.+ +...+.+..+ + ...+..++....+ .....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCN--ESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECC--cHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCC
Confidence 4456779999999999999998 4 7899998554 4444444333 2 1333333332221 14566
Q ss_pred eEEEEcc
Q 043503 340 DIVHSMH 346 (430)
Q Consensus 340 DlV~~~~ 346 (430)
++++.-+
T Consensus 101 ~~~vgLH 107 (141)
T PF13679_consen 101 DILVGLH 107 (141)
T ss_pred eEEEEee
Confidence 7777743
No 248
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=95.12 E-value=0.27 Score=48.67 Aligned_cols=125 Identities=16% Similarity=0.161 Sum_probs=77.9
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChhHHHHHHh----cCC---eeEEEcccccCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGPFNSFIAS----RGL---ISMHISVSQRLPF 334 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~~le~a~~----rg~---i~~~~~d~~~lpf 334 (430)
|-.+|+..|+.. |++-|.|+|++.-++++. + .++++. |+.+.-.+.|.+ .|. +.+.+-|....-|
T Consensus 97 I~~~L~i~PGsv---V~EsGTGSGSlShaiaraV~ptGhl~tf--efH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 97 ILSMLEIRPGSV---VLESGTGSGSLSHAIARAVAPTGHLYTF--EFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHhcCCCCCE---EEecCCCcchHHHHHHHhhCcCcceEEE--EecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 555666666544 599999999999999887 3 466666 555554444543 343 7777777655444
Q ss_pred --CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEE
Q 043503 335 --FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 335 --~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
.+..+|.|+.- . |. ....+--++.+||-+|.-+. .|..=-++. +.-.+.+.+.||.-+..
T Consensus 172 ~~ks~~aDaVFLD-l-----Pa--Pw~AiPha~~~lk~~g~r~c-sFSPCIEQv-qrtce~l~~~gf~~i~~ 233 (314)
T KOG2915|consen 172 LIKSLKADAVFLD-L-----PA--PWEAIPHAAKILKDEGGRLC-SFSPCIEQV-QRTCEALRSLGFIEIET 233 (314)
T ss_pred cccccccceEEEc-C-----CC--hhhhhhhhHHHhhhcCceEE-eccHHHHHH-HHHHHHHHhCCCceEEE
Confidence 36789999983 2 22 34566777779998775322 222111112 23445778889875543
No 249
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.03 E-value=0.3 Score=49.85 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=58.3
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc------------C------CEEEEEecCCChhHH----------HHH
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER------------N------VTIITTSLNLDGPFN----------SFI 316 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~------------g------~~Vv~vdiD~s~~~l----------e~a 316 (430)
|..++......+.=+|+|+||.+|..+..+... + ++|+--|+- +..+. +..
T Consensus 5 i~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP-~NDFn~lF~~l~~~~~~~ 83 (334)
T PF03492_consen 5 IKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLP-SNDFNTLFKSLPSFQQSL 83 (334)
T ss_dssp HHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-T-TS-HHHHHHCHHHHHHHH
T ss_pred HHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC-CccHHHHHHhChhhhhcc
Confidence 444543223333335699999999877665543 1 356655442 11111 111
Q ss_pred HhcCC--eeEEEcccccCCCCCCceeEEEEccchhhcCCc-------------------------------------hhH
Q 043503 317 ASRGL--ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPD-------------------------------------SML 357 (430)
Q Consensus 317 ~~rg~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d-------------------------------------~~l 357 (430)
...+. +..+.+.+..--||+++.|+++++.++ ||... .++
T Consensus 84 ~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~al-HWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~ 162 (334)
T PF03492_consen 84 KKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYAL-HWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDF 162 (334)
T ss_dssp HHTTSEEEEEEES-TTS--S-TT-EEEEEEES-T-TB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHH
T ss_pred CCCceEEEEecCchhhhccCCCCceEEEEEechh-hhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHH
Confidence 11122 222334444434789999999999999 77521 123
Q ss_pred HHHHHHHHHhccCCcEEEEeecc
Q 043503 358 EFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 358 ~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
..+|.-=.+-|+|||.+++.-+.
T Consensus 163 ~~FL~~Ra~ELv~GG~mvl~~~g 185 (334)
T PF03492_consen 163 SSFLKARAEELVPGGRMVLTFLG 185 (334)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHhhheeccCcEEEEEEee
Confidence 34555556678899999986443
No 250
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=0.064 Score=49.23 Aligned_cols=119 Identities=21% Similarity=0.170 Sum_probs=72.9
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHH---hcC----CeeE--EEc--ccccCCCCCCceeEEE
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIA---SRG----LISM--HIS--VSQRLPFFENTLDIVH 343 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~---~rg----~i~~--~~~--d~~~lpf~d~sfDlV~ 343 (430)
+.||++|+|--.++..|... ...|..+ |-.+..++..+ .++ .-.. ..- ..........+||+|+
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~lt--dgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLT--DGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEe--cCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 44599999987777666544 4455555 54455444433 222 1111 100 1111122346899999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
|..|+. .++ ....+++-|.+.|+|.|.-++. .+...+..+.+.......||.+..
T Consensus 109 aADClF--fdE-~h~sLvdtIk~lL~p~g~Al~f--sPRRg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 109 AADCLF--FDE-HHESLVDTIKSLLRPSGRALLF--SPRRGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred eccchh--HHH-HHHHHHHHHHHHhCcccceeEe--cCcccchHHHHHHHHHhceeEEEe
Confidence 999983 222 4678999999999999996663 233344456677778889988765
No 251
>PRK13699 putative methylase; Provisional
Probab=94.81 E-value=0.11 Score=49.94 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=50.6
Q ss_pred eEEEcccccC--CCCCCceeEEEEccchh----hcCC--------chhHHHHHHHHHHhccCCcEEEEeeccccCcCcHH
Q 043503 323 SMHISVSQRL--PFFENTLDIVHSMHVLS----NWIP--------DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNE 388 (430)
Q Consensus 323 ~~~~~d~~~l--pf~d~sfDlV~~~~~L~----~~~~--------d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~ 388 (430)
.++.+|+-.+ .++++++|+|++..... +... .+-....+.+++|+|||||.+++. +.. ....
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if---~~~-~~~~ 78 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF---YGW-NRVD 78 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE---ecc-ccHH
Confidence 4667776443 46799999999964331 0000 012457889999999999998762 111 1124
Q ss_pred HHHHHHHHcCCEEEEEE
Q 043503 389 TYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 389 ~~~~ll~~~Gfk~l~~~ 405 (430)
.+..++++.||+.....
T Consensus 79 ~~~~al~~~GF~l~~~I 95 (227)
T PRK13699 79 RFMAAWKNAGFSVVGHL 95 (227)
T ss_pred HHHHHHHHCCCEEeeEE
Confidence 56677889999866433
No 252
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.77 E-value=0.045 Score=52.78 Aligned_cols=104 Identities=17% Similarity=0.259 Sum_probs=64.1
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--------CC---EEEEEecCCChhHHHHHHhcCCeeEEEcccccCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--------NV---TIITTSLNLDGPFNSFIASRGLISMHISVSQRLP 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--------g~---~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp 333 (430)
+++-..++.+ +++|+|+..-.|+|...+.++ +. .++++|+.. | |--.|+ --+++|.....
T Consensus 32 ideef~i~~g--v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~---M---aPI~GV-~qlq~DIT~~s 102 (294)
T KOG1099|consen 32 IDEEFQIFEG--VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP---M---APIEGV-IQLQGDITSAS 102 (294)
T ss_pred hhhhhhHHhh--hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc---C---CccCce-EEeecccCCHh
Confidence 3333344443 667799999999999998876 11 278886532 1 111233 23345544322
Q ss_pred --------CCCCceeEEEEccc--------hhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 334 --------FFENTLDIVHSMHV--------LSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 334 --------f~d~sfDlV~~~~~--------L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
|.....|+|+|-.. +..++..+.+...|.-..++|||||.|+--
T Consensus 103 tae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 103 TAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 44568999999432 222333335566777788999999999764
No 253
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.41 E-value=0.064 Score=46.79 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=29.1
Q ss_pred EEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHh
Q 043503 279 IGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIAS 318 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~ 318 (430)
++||+|||.|.++..+++.+ .+|+++ |+++.+.+.+++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~--E~~~~~~~~l~~ 40 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAF--EPLPDAYEILEE 40 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEE--ecCHHHHHHHHH
Confidence 36999999999999999884 368888 556666655443
No 254
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=94.34 E-value=0.39 Score=49.41 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=82.1
Q ss_pred CccEEEEEcCCccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhc--------C-----CeeEEEcccccC-CCCCCce
Q 043503 276 TIRIGLDIGGGTGTFAARMRER-N-VTIITTSLNLDGPFNSFIASR--------G-----LISMHISVSQRL-PFFENTL 339 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~r--------g-----~i~~~~~d~~~l-pf~d~sf 339 (430)
..+.||-+|+|.|--+..+.+. + -+|+-+ |.++.|++.++.+ | .+.++..|+..+ .-..+.|
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lV--dLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLV--DLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEE--ecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 3567899999999999999988 3 366777 5558888887632 1 166666665433 2345689
Q ss_pred eEEEEccchhhcCC---chhHHHHHHHHHHhccCCcEEEEeeccc-cCcCcHHHHHHHHHHcCCEEEEEEeccc
Q 043503 340 DIVHSMHVLSNWIP---DSMLEFTLYDIYRLLRPGGIFWLDRFFC-FGSQLNETYVPMLDRIGFKKLRWNVGMK 409 (430)
Q Consensus 340 DlV~~~~~L~~~~~---d~~l~~~L~ei~RvLrPGG~lvl~~f~~-~~~~~~~~~~~ll~~~Gfk~l~~~~~~k 409 (430)
|.|+.-. .+.-.+ .---..+..-+.|.|+++|.+++.--.. ..++..-.+...++++||......+-..
T Consensus 367 D~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VP 439 (508)
T COG4262 367 DVVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVP 439 (508)
T ss_pred cEEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecC
Confidence 9999821 111001 0012346667888999999998742110 0112223356678899999877765443
No 255
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.24 E-value=0.028 Score=48.17 Aligned_cols=39 Identities=41% Similarity=0.755 Sum_probs=30.3
Q ss_pred ceeEEEEccchhhcC----CchhHHHHHHHHHHhccCCcEEEEe
Q 043503 338 TLDIVHSMHVLSNWI----PDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 338 sfDlV~~~~~L~~~~----~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.||+|+|..+. -|+ .|+.+..++..+++.|+|||.|++.
T Consensus 1 ~yDvilclSVt-kWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVT-KWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-H-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEee-EEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999996554 444 2446889999999999999999984
No 256
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.15 E-value=0.096 Score=50.30 Aligned_cols=119 Identities=17% Similarity=0.120 Sum_probs=76.9
Q ss_pred ccccccceeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC-
Q 043503 247 QGREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL- 321 (430)
Q Consensus 247 ~~~e~~~~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~- 321 (430)
+.++...|+.+.....+....+..... ...|+|.-||.|..++..+.++..|+++|+| +.-+..|+.+ |.
T Consensus 68 md~e~wfsvTpe~ia~~iA~~v~~~~~---~~~iidaf~g~gGntiqfa~~~~~VisIdiD--PikIa~AkhNaeiYGI~ 142 (263)
T KOG2730|consen 68 MDREGWFSVTPEKIAEHIANRVVACMN---AEVIVDAFCGVGGNTIQFALQGPYVIAIDID--PVKIACARHNAEVYGVP 142 (263)
T ss_pred ecccceEEeccHHHHHHHHHHHHHhcC---cchhhhhhhcCCchHHHHHHhCCeEEEEecc--HHHHHHHhccceeecCC
Confidence 445555666666655554444443332 2345999999999999999999999998555 5556666655 44
Q ss_pred --eeEEEccccc----CCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcE
Q 043503 322 --ISMHISVSQR----LPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGI 373 (430)
Q Consensus 322 --i~~~~~d~~~----lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~ 373 (430)
+.|+++|.-. +.+.-..+|+|+.+.. |.-.+.+..-+.++...+.|.|.
T Consensus 143 ~rItFI~GD~ld~~~~lq~~K~~~~~vf~spp---wggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 143 DRITFICGDFLDLASKLKADKIKYDCVFLSPP---WGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred ceeEEEechHHHHHHHHhhhhheeeeeecCCC---CCCcchhhhhhhhhhhhcchhHH
Confidence 8999998543 3344444677777533 33223455666677777777654
No 257
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.34 E-value=0.28 Score=51.04 Aligned_cols=45 Identities=27% Similarity=0.417 Sum_probs=32.9
Q ss_pred CCCCCceeEEEEccchhhcCCc---h---------------------------------hHHHHHHHHHHhccCCcEEEE
Q 043503 333 PFFENTLDIVHSMHVLSNWIPD---S---------------------------------MLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 333 pf~d~sfDlV~~~~~L~~~~~d---~---------------------------------~l~~~L~ei~RvLrPGG~lvl 376 (430)
-||+++.+++|++.++ ||... + ++..+|.-=.+-|.|||.+++
T Consensus 157 LfP~~Slh~~~Ss~sl-HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl 235 (386)
T PLN02668 157 LFPARSIDVFHSAFSL-HWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFL 235 (386)
T ss_pred ccCCCceEEEEeeccc-eecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEE
Confidence 3889999999999999 78642 1 133345555667889999998
Q ss_pred ee
Q 043503 377 DR 378 (430)
Q Consensus 377 ~~ 378 (430)
.-
T Consensus 236 ~~ 237 (386)
T PLN02668 236 VC 237 (386)
T ss_pred EE
Confidence 63
No 258
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=93.26 E-value=1.5 Score=43.36 Aligned_cols=125 Identities=11% Similarity=0.142 Sum_probs=72.0
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCC--CCceeEEEEccchhhc-----
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFF--ENTLDIVHSMHVLSNW----- 351 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~--d~sfDlV~~~~~L~~~----- 351 (430)
+++|+-||.|.+...+.+.|.+++.. +|+++...+..+.+-.-.++.+|...+... ...+|+++.+..--.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a-~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~ 80 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAA-NEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGK 80 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEE-EeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhh
Confidence 36999999999999998888876543 366666666655553223556676665522 3569999985422111
Q ss_pred ---CCchhHHHHHH---HHHHhccCCcEEEEeec---cc-cCcCcHHHHHHHHHHcCCEEEEEEe
Q 043503 352 ---IPDSMLEFTLY---DIYRLLRPGGIFWLDRF---FC-FGSQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 352 ---~~d~~l~~~L~---ei~RvLrPGG~lvl~~f---~~-~~~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
..+ ....++. ++.+.++|. +|++... .. ......+.+...+++.||.+.....
T Consensus 81 ~~~~~d-~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l 143 (275)
T cd00315 81 RKGFED-TRGTLFFEIIRILKEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLL 143 (275)
T ss_pred cCCCCC-chHHHHHHHHHHHHhcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEE
Confidence 111 1222333 444455666 3333211 11 1122456688889999998654443
No 259
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=93.14 E-value=0.3 Score=46.51 Aligned_cols=95 Identities=21% Similarity=0.319 Sum_probs=50.7
Q ss_pred EEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----------CC---eeEEEcccc-cCC--CCCCcee-
Q 043503 280 GLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----------GL---ISMHISVSQ-RLP--FFENTLD- 340 (430)
Q Consensus 280 VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----------g~---i~~~~~d~~-~lp--f~d~sfD- 340 (430)
..|||||.|.+...++... --++|+ ++.....+.+++| |. +.+....+. -+| |.-++.+
T Consensus 64 faDIGCGyGGLlv~Lsp~fPdtLiLGm--EIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 64 FADIGCGYGGLLMKLAPKFPDTLILGM--EIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred EEeeccCccchhhhccccCccceeeee--hhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 3999999999999999983 344555 5544444444333 11 333333322 222 1122211
Q ss_pred EEEEccchhhcCCc-----hhHHHHHHHHHHhccCCcEEEEe
Q 043503 341 IVHSMHVLSNWIPD-----SMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 341 lV~~~~~L~~~~~d-----~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+.++..-- |+-.. -....++.+..-+|++||.++..
T Consensus 142 mff~fpdp-Hfk~~khk~rii~~~l~~eyay~l~~gg~~yti 182 (249)
T KOG3115|consen 142 MFFLFPDP-HFKARKHKWRIITSTLLSEYAYVLREGGILYTI 182 (249)
T ss_pred ceeecCCh-hHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence 12221111 11100 01235789999999999999864
No 260
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.12 E-value=0.86 Score=45.36 Aligned_cols=97 Identities=11% Similarity=0.109 Sum_probs=53.2
Q ss_pred ccEEEEEcCCccHHHHHHHH-c---CCEEEEEecCCChhHHHHHH---h-c----CCeeEEEcccccCCCCCCceeEEEE
Q 043503 277 IRIGLDIGGGTGTFAARMRE-R---NVTIITTSLNLDGPFNSFIA---S-R----GLISMHISVSQRLPFFENTLDIVHS 344 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~-~---g~~Vv~vdiD~s~~~le~a~---~-r----g~i~~~~~d~~~lpf~d~sfDlV~~ 344 (430)
.++|+=||+|.=-++..+.. + +..|+++|+| +...+.++ . . ..+.|+.+|....+..-..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d--~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDID--PEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESS--HHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCC--HHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 35679999998766655544 3 4567788665 44444332 1 1 2388999998776655578999998
Q ss_pred ccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 345 MHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 345 ~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.... . ...+...+++..+.+.++||..+++-
T Consensus 199 AalV-g-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 199 AALV-G-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -TT--S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhhc-c-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 5433 2 22224789999999999999988874
No 261
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.06 E-value=0.32 Score=49.70 Aligned_cols=95 Identities=20% Similarity=0.156 Sum_probs=63.8
Q ss_pred CCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcc-cccCCCCCCceeEEEEccchh
Q 043503 272 KPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISV-SQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 272 ~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d-~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.|+..+ -|.-+| |.|.++..+++. |++|+++ |.++.-.+.|++-|--.++... .....--.+.||+|+..-.
T Consensus 165 ~pG~~V-~I~G~G-GlGh~avQ~Aka~ga~Via~--~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-- 238 (339)
T COG1064 165 KPGKWV-AVVGAG-GLGHMAVQYAKAMGAEVIAI--TRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-- 238 (339)
T ss_pred CCCCEE-EEECCc-HHHHHHHHHHHHcCCeEEEE--eCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC--
Confidence 444443 224455 667899999985 9999998 6678888888888775555532 2121111223999998422
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
...+...-+.||+||.+++....
T Consensus 239 --------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 --------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred --------hhhHHHHHHHHhcCCEEEEECCC
Confidence 13577888999999999987655
No 262
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.03 E-value=0.12 Score=55.01 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=39.5
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHH----HHhcCC--eeEEEccccc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSF----IASRGL--ISMHISVSQR 331 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~----a~~rg~--i~~~~~d~~~ 331 (430)
..+||+-||||.++..++++-..|+|+.++ +...+. |+.+|. ..|+++-+++
T Consensus 385 k~llDv~CGTG~iglala~~~~~ViGvEi~--~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARGVKRVIGVEIS--PDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred cEEEEEeecCCceehhhhccccceeeeecC--hhhcchhhhcchhcCccceeeeecchhh
Confidence 458999999999999999988899998554 444444 445565 8899985554
No 263
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.75 E-value=2.3 Score=41.43 Aligned_cols=129 Identities=17% Similarity=0.144 Sum_probs=67.6
Q ss_pred cEEEEEcCCcc-HHHHHHHHcCCEEEEEecCCChhHHHHH----HhcCC-eeEEEcccc-cCCC-CCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTG-TFAARMRERNVTIITTSLNLDGPFNSFI----ASRGL-ISMHISVSQ-RLPF-FENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG-~~a~~La~~g~~Vv~vdiD~s~~~le~a----~~rg~-i~~~~~d~~-~lpf-~d~sfDlV~~~~~L~ 349 (430)
+.||=+|-+-- +++..+.....+|+.+ |+++.+++++ ++.|. +..+..|+. .+|- .-++||++++...-
T Consensus 46 k~il~lGDDDLtSlA~al~~~~~~I~Vv--DiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy- 122 (243)
T PF01861_consen 46 KRILFLGDDDLTSLALALTGLPKRITVV--DIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPY- 122 (243)
T ss_dssp -EEEEES-TT-HHHHHHHHT--SEEEEE---S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---S-
T ss_pred CEEEEEcCCcHHHHHHHhhCCCCeEEEE--EcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCC-
Confidence 45699987766 4555555557788888 5557666544 44565 777777764 3441 24799999995333
Q ss_pred hcCCchhHHHHHHHHHHhccCCc-EEEEeeccccCcC--cHHHHHHHHHHcCCEEEEEEecccccCC
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGG-IFWLDRFFCFGSQ--LNETYVPMLDRIGFKKLRWNVGMKLDRG 413 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG-~lvl~~f~~~~~~--~~~~~~~ll~~~Gfk~l~~~~~~k~~~g 413 (430)
..+ .+.-++..-...||.-| ..++ .|.-.+.. ....+++.+.+.||-+..+...-....|
T Consensus 123 --T~~-G~~LFlsRgi~~Lk~~g~~gy~-~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~~Fn~Y~g 185 (243)
T PF01861_consen 123 --TPE-GLKLFLSRGIEALKGEGCAGYF-GFTHKEASPDKWLEVQRFLLEMGLVITDIIPDFNRYEG 185 (243)
T ss_dssp --SHH-HHHHHHHHHHHTB-STT-EEEE-EE-TTT--HHHHHHHHHHHHTS--EEEEEEEEEEEB--
T ss_pred --CHH-HHHHHHHHHHHHhCCCCceEEE-EEecCcCcHHHHHHHHHHHHHCCcCHHHHHhhhccccc
Confidence 333 37778999999999766 4333 22322211 2346788888999998877655444333
No 264
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=92.56 E-value=0.3 Score=46.50 Aligned_cols=96 Identities=10% Similarity=-0.009 Sum_probs=50.9
Q ss_pred cEEEEEcCCccHHHHHHHHc------CCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCC----C----CCCce
Q 043503 278 RIGLDIGGGTGTFAARMRER------NVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLP----F----FENTL 339 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~------g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lp----f----~d~sf 339 (430)
++|+++|.=.|.-+..+|+. ..+|+++|+|+.+.-. .+.+. ..|.++.+|..... . .....
T Consensus 34 d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~-~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 34 DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR-KAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S--GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch-HHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 44699998887666555543 4799999998755322 22333 56899999765422 1 12234
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.+|+- ..- |-... ....|.-....++||+++++.+
T Consensus 113 vlVil-Ds~-H~~~h--vl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 113 VLVIL-DSS-HTHEH--VLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEEEE-SS-----SS--HHHHHHHHHHT--TT-EEEETS
T ss_pred eEEEE-CCC-ccHHH--HHHHHHHhCccCCCCCEEEEEe
Confidence 45555 222 21222 5667788999999999998854
No 265
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=92.40 E-value=0.83 Score=40.93 Aligned_cols=109 Identities=16% Similarity=0.137 Sum_probs=64.5
Q ss_pred EEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCC--CCCCceeEEEEccchhhcC------CchhHHHHHHHH
Q 043503 300 TIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLP--FFENTLDIVHSMHVLSNWI------PDSMLEFTLYDI 364 (430)
Q Consensus 300 ~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lp--f~d~sfDlV~~~~~L~~~~------~d~~l~~~L~ei 364 (430)
+|+++ |+.+..++..+++ + .+.++...-+.+. .+++++|+|+.+...-.-. ..+.....+..+
T Consensus 1 kVyaF--DIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAF--DIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEE--ES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEE--ECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 47777 6667767666544 3 3788887766665 2335899999974431111 112456789999
Q ss_pred HHhccCCcEEEEeeccccCcCc-----HHHHHHHHHHcCCEEEEEEecccc
Q 043503 365 YRLLRPGGIFWLDRFFCFGSQL-----NETYVPMLDRIGFKKLRWNVGMKL 410 (430)
Q Consensus 365 ~RvLrPGG~lvl~~f~~~~~~~-----~~~~~~ll~~~Gfk~l~~~~~~k~ 410 (430)
.+.|+|||.+.+.-+..++... ...|..-+....|.+.++..-...
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~~ 129 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQK 129 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-S
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCCC
Confidence 9999999999987666444321 123455555677888888766553
No 266
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=92.29 E-value=0.63 Score=46.94 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=53.7
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-----CCeeEEEcccccCC----
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-----GLISMHISVSQRLP---- 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-----g~i~~~~~d~~~lp---- 333 (430)
+++++..+......+++|.-+|.|..+..++++ +.+|+++ |.++.+++.++++ +.+.++++++..+.
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigi--D~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGI--DRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEE--cCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence 445555443333346799999999999999987 4788988 5556777776654 34778888766543
Q ss_pred -CCCCceeEEEE
Q 043503 334 -FFENTLDIVHS 344 (430)
Q Consensus 334 -f~d~sfDlV~~ 344 (430)
...+++|.|+.
T Consensus 87 ~~~~~~vDgIl~ 98 (305)
T TIGR00006 87 ELLVTKIDGILV 98 (305)
T ss_pred hcCCCcccEEEE
Confidence 13356888888
No 267
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=91.84 E-value=0.95 Score=45.56 Aligned_cols=83 Identities=14% Similarity=0.165 Sum_probs=38.2
Q ss_pred HHHHHccCCCC--CccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHh----c-C---CeeEEEccc---
Q 043503 265 IDQVLSMKPLG--TIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIAS----R-G---LISMHISVS--- 329 (430)
Q Consensus 265 id~lL~~~p~~--~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~----r-g---~i~~~~~d~--- 329 (430)
+.+++...... ..-++||||+|...+=..|..+ |.+++++|+| +..++.|++ + + .|.+.....
T Consensus 89 i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID--~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~ 166 (299)
T PF05971_consen 89 IADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDID--PKSLESARENVERNPNLESRIELRKQKNPDN 166 (299)
T ss_dssp HHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES---HHHHHHHHHHHHHT-T-TTTEEEEE--ST-S
T ss_pred HHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCC--HHHHHHHHHHHHhccccccceEEEEcCCccc
Confidence 45555433222 1246799999998443223322 8999999665 566666553 3 2 366654421
Q ss_pred --ccCCCCCCceeEEEEccchh
Q 043503 330 --QRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 330 --~~lpf~d~sfDlV~~~~~L~ 349 (430)
..+..++..||+.+|+..++
T Consensus 167 i~~~i~~~~e~~dftmCNPPFy 188 (299)
T PF05971_consen 167 IFDGIIQPNERFDFTMCNPPFY 188 (299)
T ss_dssp STTTSTT--S-EEEEEE-----
T ss_pred cchhhhcccceeeEEecCCccc
Confidence 11223356899999987774
No 268
>PRK11524 putative methyltransferase; Provisional
Probab=91.34 E-value=0.46 Score=47.15 Aligned_cols=77 Identities=12% Similarity=0.161 Sum_probs=47.5
Q ss_pred eeEEEcccccC--CCCCCceeEEEEccchhh----------cCCc---hhHHHHHHHHHHhccCCcEEEEeeccccCcCc
Q 043503 322 ISMHISVSQRL--PFFENTLDIVHSMHVLSN----------WIPD---SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQL 386 (430)
Q Consensus 322 i~~~~~d~~~l--pf~d~sfDlV~~~~~L~~----------~~~d---~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~ 386 (430)
..++.+|+..+ .+++++||+|++.-.... |... ..+...+.++.|+|||||.+++.. .....
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~---~~~~~ 85 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN---STENM 85 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc---Cchhh
Confidence 35677776553 356889999999643310 0000 123578999999999999999842 21211
Q ss_pred HHHHHHHHHHcCCEEEE
Q 043503 387 NETYVPMLDRIGFKKLR 403 (430)
Q Consensus 387 ~~~~~~ll~~~Gfk~l~ 403 (430)
.+..++.+.||....
T Consensus 86 --~~~~~~~~~~f~~~~ 100 (284)
T PRK11524 86 --PFIDLYCRKLFTIKS 100 (284)
T ss_pred --hHHHHHHhcCcceEE
Confidence 234556677886443
No 269
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.28 E-value=0.79 Score=39.00 Aligned_cols=85 Identities=19% Similarity=0.180 Sum_probs=59.8
Q ss_pred CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccchhhcCCchhHH
Q 043503 286 GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVLSNWIPDSMLE 358 (430)
Q Consensus 286 GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L~~~~~d~~l~ 358 (430)
|.|.++..+++. |.+|+++ +.++.-.+.+++-|.-.++......+. ...+.+|+|+-.-.. .
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~--~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~---------~ 69 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIAT--DRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS---------G 69 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEE--ESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS---------H
T ss_pred ChHHHHHHHHHHcCCEEEEE--ECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCc---------H
Confidence 568888888877 9999988 566777888888884333333222111 234589999874221 3
Q ss_pred HHHHHHHHhccCCcEEEEeeccc
Q 043503 359 FTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 359 ~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
..+.....+|+|||.+++.....
T Consensus 70 ~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 70 DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHhccCCEEEEEEccC
Confidence 57889999999999999987664
No 270
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=91.11 E-value=2.5 Score=41.45 Aligned_cols=100 Identities=20% Similarity=0.199 Sum_probs=60.0
Q ss_pred cEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc--------C-CeeEEEccc-ccCC--CCCCc-eeEEE
Q 043503 278 RIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR--------G-LISMHISVS-QRLP--FFENT-LDIVH 343 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r--------g-~i~~~~~d~-~~lp--f~d~s-fDlV~ 343 (430)
..||++|.|+|..++.++.. +.+|+..|.-.....++..... | .+.+...+. .... +.... ||+|+
T Consensus 88 ~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dlil 167 (248)
T KOG2793|consen 88 INVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLIL 167 (248)
T ss_pred eeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEE
Confidence 45799999999877777775 7777766443222222222111 2 222222222 2211 22223 99999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
++.++.+ +. ..+.++.-+...|-.+|.+++....
T Consensus 168 asDvvy~--~~-~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 168 ASDVVYE--EE-SFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred Eeeeeec--CC-cchhHHHHHHHHHhcCCeEEEEEec
Confidence 9988843 22 3667888888889999977776544
No 271
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.10 E-value=1.8 Score=42.57 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=56.9
Q ss_pred EEEEEcCC-ccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccC-----CCCCCceeEEEEccchhhc
Q 043503 279 IGLDIGGG-TGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRL-----PFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 279 ~VLDIGcG-tG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l-----pf~d~sfDlV~~~~~L~~~ 351 (430)
+||..|+| .|..++.+++. |.+|+.+ +.++...+.+++.|.-.++....... ....+.+|+|+.....
T Consensus 168 ~vli~g~g~vG~~~~~la~~~G~~V~~~--~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g~--- 242 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAMGAAVIAV--DIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGT--- 242 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCEEEEE--cCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCCC---
Confidence 44667876 47788888776 8888877 55677777777666522222111111 1235679998863211
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+.++.+.|++||.++...
T Consensus 243 ------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 243 ------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ------HHHHHHHHHHhhcCCEEEEEC
Confidence 236778899999999998753
No 272
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.45 E-value=4.3 Score=33.87 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=65.3
Q ss_pred CCccHHHHHHHHc----CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC----CCCCceeEEEEccchhhcCCchh
Q 043503 285 GGTGTFAARMRER----NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP----FFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 285 cGtG~~a~~La~~----g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp----f~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
||.|.++..+++. +..|+.+ |.++...+.+.+.| +.++.+|..+.. ..-...|.|++. .+++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvi--d~d~~~~~~~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~------~~~d~ 74 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVI--DRDPERVEELREEG-VEVIYGDATDPEVLERAGIEKADAVVIL------TDDDE 74 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEE--ESSHHHHHHHHHTT-SEEEES-TTSHHHHHHTTGGCESEEEEE------SSSHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEE--ECCcHHHHHHHhcc-cccccccchhhhHHhhcCccccCEEEEc------cCCHH
Confidence 5667777777665 5588888 44566677777778 578888765532 223568888883 23333
Q ss_pred HHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEE
Q 043503 357 LEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 357 l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
....+....|-+.|...++..-. .+...+.+++.|...+
T Consensus 75 ~n~~~~~~~r~~~~~~~ii~~~~-------~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 75 ENLLIALLARELNPDIRIIARVN-------DPENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEES-------SHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEEC-------CHHHHHHHHHCCcCEE
Confidence 55567777788888888776321 2556777888887644
No 273
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=89.69 E-value=2.3 Score=43.62 Aligned_cols=100 Identities=15% Similarity=0.009 Sum_probs=61.6
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccc-----cC-CC-CCCceeEEEEccc
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQ-----RL-PF-FENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~-----~l-pf-~d~sfDlV~~~~~ 347 (430)
.+||.+|||. |.++..+++. |. +++++ +.++...+.+++.+...++..... .+ .+ ..+.+|+|+..-.
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~~~vi~~--~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg 263 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGAERVIAI--DRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAVG 263 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECCC
Confidence 3469999988 8888888877 76 57777 666778888887733333221111 11 11 2346899988421
Q ss_pred hh-------hc-----CCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 348 LS-------NW-----IPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 348 L~-------~~-----~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
-. +. .+..+....+.++.+.++|||.+++...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 264 MEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 10 00 0011124578899999999999987643
No 274
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=89.49 E-value=1.5 Score=42.91 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=49.1
Q ss_pred HHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCC
Q 043503 264 GIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFE 336 (430)
Q Consensus 264 ~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d 336 (430)
..+.++...+ ...+|+|||||.--++...... +.++++.|+| ..+.++...- +. ..+.+.|...-+ +.
T Consensus 95 fY~~if~~~~--~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID--~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~ 169 (251)
T PF07091_consen 95 FYDEIFGRIP--PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDID--SQLVEFLNAFLAVLGVPHDARVRDLLSDP-PK 169 (251)
T ss_dssp HHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESB--HHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TT
T ss_pred HHHHHHhcCC--CCchhhhhhccCCceehhhcccCCCcEEEEEeCC--HHHHHHHHHHHHhhCCCcceeEeeeeccC-CC
Confidence 3455555443 2566799999999999988776 6788888555 6666554432 32 556666654433 46
Q ss_pred CceeEEEEccch
Q 043503 337 NTLDIVHSMHVL 348 (430)
Q Consensus 337 ~sfDlV~~~~~L 348 (430)
...|+.+..-++
T Consensus 170 ~~~DlaLllK~l 181 (251)
T PF07091_consen 170 EPADLALLLKTL 181 (251)
T ss_dssp SEESEEEEET-H
T ss_pred CCcchhhHHHHH
Confidence 779999996555
No 275
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.36 E-value=0.48 Score=48.52 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=52.5
Q ss_pred cEEEEEcCCccHHHHHHHHc--C-CEEEEEecCCChhHHHHH---HhcCC---eeEEEccc--ccCCCC-CCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRER--N-VTIITTSLNLDGPFNSFI---ASRGL---ISMHISVS--QRLPFF-ENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g-~~Vv~vdiD~s~~~le~a---~~rg~---i~~~~~d~--~~lpf~-d~sfDlV~~~ 345 (430)
..+||+|.|.|+-+.++-.- . -.++.+ +.++...+.. .++-. ......+. .+++++ ...|++|+..
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~il--e~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVIL--EASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhh--ccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 34599999999866555433 1 111111 3333322221 22210 11122221 244443 4467777765
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+-+.+...+..+...+..+..++.|||.|+|.+
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence 554332323234458999999999999999965
No 276
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=88.87 E-value=0.56 Score=40.22 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=23.0
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEe
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTS 305 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vd 305 (430)
.-+|||||+|.+.--|.+.|+.-.|+|
T Consensus 61 ~FVDlGCGNGLLV~IL~~EGy~G~GiD 87 (112)
T PF07757_consen 61 GFVDLGCGNGLLVYILNSEGYPGWGID 87 (112)
T ss_pred ceEEccCCchHHHHHHHhCCCCccccc
Confidence 349999999999988888899877774
No 277
>PRK10742 putative methyltransferase; Provisional
Probab=88.77 E-value=2.7 Score=41.27 Aligned_cols=70 Identities=10% Similarity=-0.050 Sum_probs=46.4
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHH---HHHHhc------------CCeeEEEcccccC-CCCCCceeE
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFN---SFIASR------------GLISMHISVSQRL-PFFENTLDI 341 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~l---e~a~~r------------g~i~~~~~d~~~l-pf~d~sfDl 341 (430)
.+|||+-+|+|..+..++.+|++|+.+ +-++... +...++ ..+.++.+|...+ .-...+||+
T Consensus 90 p~VLD~TAGlG~Da~~las~G~~V~~v--Er~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDV 167 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGCRVRML--ERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_pred CEEEECCCCccHHHHHHHHcCCEEEEE--ECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcE
Confidence 367999999999999999999998888 5555332 211111 1256666765332 212347999
Q ss_pred EEEccchh
Q 043503 342 VHSMHVLS 349 (430)
Q Consensus 342 V~~~~~L~ 349 (430)
|..-..+.
T Consensus 168 VYlDPMfp 175 (250)
T PRK10742 168 VYLDPMFP 175 (250)
T ss_pred EEECCCCC
Confidence 99955553
No 278
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=87.98 E-value=1.1 Score=45.89 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=65.1
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChh---------HHHHHHhcCC----eeEEEcccccCCC-CCCceeEEE
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGP---------FNSFIASRGL----ISMHISVSQRLPF-FENTLDIVH 343 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~---------~le~a~~rg~----i~~~~~d~~~lpf-~d~sfDlV~ 343 (430)
.+|.|-=.|||++....+.-|+-|+|.|||..-. .-..-++-|. +.++.+|...-|+ ....||.|+
T Consensus 210 divyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDaIv 289 (421)
T KOG2671|consen 210 DIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDAIV 289 (421)
T ss_pred CEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceeeEEE
Confidence 4479999999999998888899999998875211 1112223343 5667778776664 356899999
Q ss_pred Eccchh-----------------------hcCC-------chhHHHHHHHHHHhccCCcEEEE
Q 043503 344 SMHVLS-----------------------NWIP-------DSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 344 ~~~~L~-----------------------~~~~-------d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
|-.... .+.| .......|.=..|+|.-||.+++
T Consensus 290 cDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~ 352 (421)
T KOG2671|consen 290 CDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVF 352 (421)
T ss_pred eCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEE
Confidence 921110 0111 11344566678899999999875
No 279
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.61 E-value=19 Score=34.80 Aligned_cols=127 Identities=12% Similarity=0.068 Sum_probs=75.3
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCCh--hHHHHHHhcCC---eeEEEcccccCCC-CCC
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDG--PFNSFIASRGL---ISMHISVSQRLPF-FEN 337 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~--~~le~a~~rg~---i~~~~~d~~~lpf-~d~ 337 (430)
..+....+.+.. +.||||--|.++.++.+.+ .++++.|+..++ .......+.++ +....+|.-. ++ .+.
T Consensus 8 ~~va~~V~~~~~--iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~~~d 84 (226)
T COG2384 8 TTVANLVKQGAR--IADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLELED 84 (226)
T ss_pred HHHHHHHHcCCc--eeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccCccC
Confidence 344444443332 5999999999999999985 466666554433 12233334455 5555555411 23 344
Q ss_pred ceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 338 TLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 338 sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.+|+|+....-.. ....+|.+-..-|+-=-.|++ .+......+.+.+...+|.+....
T Consensus 85 ~~d~ivIAGMGG~-----lI~~ILee~~~~l~~~~rlIL-----QPn~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 85 EIDVIVIAGMGGT-----LIREILEEGKEKLKGVERLIL-----QPNIHTYELREWLSANSYEIKAET 142 (226)
T ss_pred CcCEEEEeCCcHH-----HHHHHHHHhhhhhcCcceEEE-----CCCCCHHHHHHHHHhCCceeeeee
Confidence 7898887433322 255677777777763334554 222334667888888998876544
No 280
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=87.43 E-value=1.1 Score=48.15 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=70.5
Q ss_pred ccEEEEEcCCccHHHHHHHH------cCCEEEEEecCCCh-hHHHHHHh---cCCeeEEEcccccCCCCCCceeEEEEcc
Q 043503 277 IRIGLDIGGGTGTFAARMRE------RNVTIITTSLNLDG-PFNSFIAS---RGLISMHISVSQRLPFFENTLDIVHSMH 346 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~------~g~~Vv~vdiD~s~-~~le~a~~---rg~i~~~~~d~~~lpf~d~sfDlV~~~~ 346 (430)
+.+++=+|+|-|-+..+..+ +.++++++.-++.+ .+++...- .+.+.++..|++.++-|..+.|++++ .
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-E 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-E 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-H
Confidence 45678899999977554433 35777888555443 23333221 14589999999999865689999998 6
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
.|..+.+.+.-.+-|..+.+.|||.|..+=
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 666656555566789999999999998763
No 281
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=86.95 E-value=5.1 Score=43.32 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=58.7
Q ss_pred cEEEEEcCCcc-HHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEccc-c----------cCC----------C
Q 043503 278 RIGLDIGGGTG-TFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVS-Q----------RLP----------F 334 (430)
Q Consensus 278 r~VLDIGcGtG-~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~-~----------~lp----------f 334 (430)
.+|+=+|+|.- ..++..+.. |++|+++ |.++..++.+++-|- .++..+. + .+. +
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~--D~~~~rle~aeslGA-~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAF--DTRPEVAEQVESMGA-EFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHcCC-eEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 45699999985 455556655 8988887 666777888887765 2221111 1 011 0
Q ss_pred CC--CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 335 FE--NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 335 ~d--~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.+ +.+|+|+..-.... .+. ...+..++.+.+||||.++...
T Consensus 243 ~~~~~gaDVVIetag~pg-~~a--P~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 243 AEQAKEVDIIITTALIPG-KPA--PKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HhccCCCCEEEECCCCCc-ccC--cchHHHHHHHhcCCCCEEEEEc
Confidence 11 46999999543311 111 2223599999999999987643
No 282
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=86.73 E-value=4.2 Score=39.98 Aligned_cols=125 Identities=13% Similarity=0.211 Sum_probs=71.8
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC---CCCCceeEEEEccchhhc----
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP---FFENTLDIVHSMHVLSNW---- 351 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp---f~d~sfDlV~~~~~L~~~---- 351 (430)
+++|+=||.|.+...+.+.|.+++.. +|+++...+.-+.+-. ....+|...+. ++. .+|+++....--.+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a-~e~~~~a~~~y~~N~~-~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag 78 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWA-VEIDPDACETYKANFP-EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAG 78 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEE-EESSHHHHHHHHHHHT-EEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTS
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEE-eecCHHHHHhhhhccc-ccccccccccccccccc-cceEEEeccCCceEeccc
Confidence 46999999999999999999766543 3555655555444433 67777877665 443 59999984221111
Q ss_pred ----CCc--hhHHHHHHHHHHhccCCcEEEEee---cccc-CcCcHHHHHHHHHHcCCEEEEEEec
Q 043503 352 ----IPD--SMLEFTLYDIYRLLRPGGIFWLDR---FFCF-GSQLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 352 ----~~d--~~l~~~L~ei~RvLrPGG~lvl~~---f~~~-~~~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
..+ ..+-.-+.++.+.++|.- |++.. +... .....+.+...+++.||.+....+.
T Consensus 79 ~~~~~~d~r~~L~~~~~~~v~~~~Pk~-~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vln 143 (335)
T PF00145_consen 79 KRKGFDDPRNSLFFEFLRIVKELKPKY-FLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVLN 143 (335)
T ss_dssp THHCCCCHTTSHHHHHHHHHHHHS-SE-EEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cccccccccchhhHHHHHHHhhccceE-EEecccceeeccccccccccccccccccceeehhcccc
Confidence 111 123344555666678854 33322 1111 1124567888999999987644433
No 283
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.25 E-value=3.7 Score=41.20 Aligned_cols=91 Identities=10% Similarity=0.063 Sum_probs=54.7
Q ss_pred cEEEEEcCC-ccHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEc---ccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGG-TGTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHIS---VSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcG-tG~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~---d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+||=+|+| .|.++..+++. |+ +|+++ +.++.-++.+++-|.-.++.. +...+....+.+|+|+..-.-
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~--~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~--- 245 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCA--DVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH--- 245 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEE--eCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC---
Confidence 345667764 34566666665 77 57777 555677788877775333221 111111112358998874211
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
...+....++|++||.+++...
T Consensus 246 ------~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 246 ------PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ------HHHHHHHHHHhhcCCEEEEEcc
Confidence 2356788889999999988654
No 284
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=84.57 E-value=5 Score=42.17 Aligned_cols=116 Identities=14% Similarity=0.088 Sum_probs=64.4
Q ss_pred EEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHH----HHHHhcCCeeEE--EcccccCC---CCCCceeEEEE--
Q 043503 279 IGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFN----SFIASRGLISMH--ISVSQRLP---FFENTLDIVHS-- 344 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~l----e~a~~rg~i~~~--~~d~~~lp---f~d~sfDlV~~-- 344 (430)
+|||+.+-.|.=+.++|.. ...|++. |.+.+-+ +.+..-|.-..+ ..|...+| |+. +||-|+.
T Consensus 244 RIlDmcAAPGGKTt~IAalMkn~G~I~An--D~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLLDA 320 (460)
T KOG1122|consen 244 RILDMCAAPGGKTTHIAALMKNTGVIFAN--DSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLLDA 320 (460)
T ss_pred eecchhcCCCchHHHHHHHHcCCceEEec--ccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeeecC
Confidence 3499999888554444443 3345665 4444433 333344663333 34555555 444 8999985
Q ss_pred --cc--chh-----hcCC--------chhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHc
Q 043503 345 --MH--VLS-----NWIP--------DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRI 397 (430)
Q Consensus 345 --~~--~L~-----~~~~--------d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~ 397 (430)
+. +.. .+.. .....++|......++|||+++.++=....++-...+...+.+.
T Consensus 321 PCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~ 390 (460)
T KOG1122|consen 321 PCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKR 390 (460)
T ss_pred CCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhC
Confidence 22 110 0000 01356788889999999999998863322222223455556665
No 285
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=84.25 E-value=0.93 Score=41.67 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=44.5
Q ss_pred CCCceeEEEEccchhhcC---------CchhHHHHHHHHHHhccCCcEEEEeeccccCcC------cHHHHHHHHHHcCC
Q 043503 335 FENTLDIVHSMHVLSNWI---------PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ------LNETYVPMLDRIGF 399 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~---------~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~------~~~~~~~ll~~~Gf 399 (430)
..++||.+.|..+++|.- |.+ -...+.++.++|||||.+++.-.+..+.- ......-..--.||
T Consensus 60 y~~~fD~~as~~siEh~GLGRYGDPidp~G-dl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gf 138 (177)
T PF03269_consen 60 YAGSFDFAASFSSIEHFGLGRYGDPIDPIG-DLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGF 138 (177)
T ss_pred hhccchhhheechhccccccccCCCCCccc-cHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCc
Confidence 357899999988886632 222 34678899999999999999865543211 11112222334788
Q ss_pred EEEEE
Q 043503 400 KKLRW 404 (430)
Q Consensus 400 k~l~~ 404 (430)
+.+..
T Consensus 139 e~i~t 143 (177)
T PF03269_consen 139 EWIDT 143 (177)
T ss_pred EEEee
Confidence 87764
No 286
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=83.10 E-value=1.1 Score=44.57 Aligned_cols=95 Identities=15% Similarity=0.213 Sum_probs=53.4
Q ss_pred cEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHH-----------HHH--hc---CCeeEEEcccccCCC-CCC--
Q 043503 278 RIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNS-----------FIA--SR---GLISMHISVSQRLPF-FEN-- 337 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le-----------~a~--~r---g~i~~~~~d~~~lpf-~d~-- 337 (430)
++|||+|||.|.-.+.....+ +.+..- |.++..++ .+. +. +...+......++-+ ..+
T Consensus 118 k~vLELgCg~~Lp~i~~~~~~~~~~~fq--D~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~~ 195 (282)
T KOG2920|consen 118 KRVLELGCGAALPGIFAFVKGAVSVHFQ--DFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTERT 195 (282)
T ss_pred ceeEecCCcccccchhhhhhccceeeeE--ecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcccc
Confidence 567999999998888888776 566655 33333221 111 11 112222221111111 122
Q ss_pred ceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 338 TLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 338 sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
.||+|.++-.+.. .+. ....+.......++++|.+++
T Consensus 196 ~ydlIlsSetiy~-~~~-~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 196 HYDLILSSETIYS-IDS-LAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred chhhhhhhhhhhC-cch-hhhhHhhhhhhcCCccchhhh
Confidence 7899999877744 222 222236777788889998876
No 287
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=83.00 E-value=8.5 Score=42.74 Aligned_cols=74 Identities=18% Similarity=0.129 Sum_probs=46.4
Q ss_pred eEEEccccc-CCCCCCceeEEEEccchhh-cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCE
Q 043503 323 SMHISVSQR-LPFFENTLDIVHSMHVLSN-WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFK 400 (430)
Q Consensus 323 ~~~~~d~~~-lpf~d~sfDlV~~~~~L~~-~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk 400 (430)
.++.+|+.. ++--+..+|+++.- .+.. -.|+-=-..++..+.|.++|||.|.-. .. ...+..-+..+||+
T Consensus 150 ~l~~gd~~~~~~~~~~~~d~~~lD-~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~--t~-----a~~vr~~l~~~GF~ 221 (662)
T PRK01747 150 DLWFGDANELLPQLDARADAWFLD-GFAPAKNPDMWSPNLFNALARLARPGATLATF--TS-----AGFVRRGLQEAGFT 221 (662)
T ss_pred EEEecCHHHHHHhccccccEEEeC-CCCCccChhhccHHHHHHHHHHhCCCCEEEEe--eh-----HHHHHHHHHHcCCe
Confidence 355567543 33223569999983 2211 011111246999999999999988642 21 35577889999999
Q ss_pred EEEE
Q 043503 401 KLRW 404 (430)
Q Consensus 401 ~l~~ 404 (430)
+.+.
T Consensus 222 v~~~ 225 (662)
T PRK01747 222 VRKV 225 (662)
T ss_pred eeec
Confidence 8764
No 288
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=82.71 E-value=7.4 Score=40.23 Aligned_cols=118 Identities=16% Similarity=0.180 Sum_probs=65.5
Q ss_pred EEEEEcCCccHHHHHHHHcCC------EEEEEecCCC-hhHHHHHHhc---CCeeEEEcccccCC---------CCCCce
Q 043503 279 IGLDIGGGTGTFAARMRERNV------TIITTSLNLD-GPFNSFIASR---GLISMHISVSQRLP---------FFENTL 339 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~------~Vv~vdiD~s-~~~le~a~~r---g~i~~~~~d~~~lp---------f~d~sf 339 (430)
+|||+.+-.|.=++.|.+... .|++-|+|.. ..|+.....+ ....+...++..+| .....|
T Consensus 158 ~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~f 237 (375)
T KOG2198|consen 158 KVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLKF 237 (375)
T ss_pred eeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhhhc
Confidence 459999999988887877632 5666655432 1343333333 11222222333333 123469
Q ss_pred eEEEEc-------------cchhh-cCCc------hhHHHHHHHHHHhccCCcEEEEeeccccCcCc--HHHHHHHHHHc
Q 043503 340 DIVHSM-------------HVLSN-WIPD------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQL--NETYVPMLDRI 397 (430)
Q Consensus 340 DlV~~~-------------~~L~~-~~~d------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~--~~~~~~ll~~~ 397 (430)
|-|+|- ..... |... .....+|..-.+.||+||.++.++ |.-... ...+..+++..
T Consensus 238 DrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST--CSLnpieNEaVV~~~L~~~ 315 (375)
T KOG2198|consen 238 DRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST--CSLNPIENEAVVQEALQKV 315 (375)
T ss_pred ceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec--cCCCchhhHHHHHHHHHHh
Confidence 999981 01101 2111 124568899999999999999986 533332 23455566554
Q ss_pred C
Q 043503 398 G 398 (430)
Q Consensus 398 G 398 (430)
|
T Consensus 316 ~ 316 (375)
T KOG2198|consen 316 G 316 (375)
T ss_pred c
Confidence 4
No 289
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=82.62 E-value=4 Score=40.00 Aligned_cols=98 Identities=16% Similarity=0.313 Sum_probs=63.0
Q ss_pred cCCCCCccEEEEEcCCccHHHHHHHHc-C--CEEEEEecCC-C-hhHHHHHHhcCC-eeEEEccccc---CCCCCCceeE
Q 043503 271 MKPLGTIRIGLDIGGGTGTFAARMRER-N--VTIITTSLNL-D-GPFNSFIASRGL-ISMHISVSQR---LPFFENTLDI 341 (430)
Q Consensus 271 ~~p~~~ir~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~-s-~~~le~a~~rg~-i~~~~~d~~~---lpf~d~sfDl 341 (430)
+.|+.++ |=+|.++|+.-..+.+- | .-|+++.... + -..+.+|++|-+ ++++ -|+.- ..+.-.-.|+
T Consensus 154 ikpGsKV---LYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIi-EDArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 154 IKPGSKV---LYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPII-EDARHPAKYRMLVGMVDV 229 (317)
T ss_pred ecCCceE---EEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeee-ccCCCchheeeeeeeEEE
Confidence 4555554 99999999988888776 3 3466663322 1 245677777755 4444 44422 1122346788
Q ss_pred EEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
|++ .+- .|+ ....+..+..-.||+||.|+++
T Consensus 230 IFa-Dva---qpd-q~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 230 IFA-DVA---QPD-QARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred Eec-cCC---Cch-hhhhhhhhhhhhhccCCeEEEE
Confidence 888 222 244 4667778899999999999986
No 290
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=81.84 E-value=13 Score=37.84 Aligned_cols=94 Identities=17% Similarity=0.172 Sum_probs=62.9
Q ss_pred EEEEEcCCc-cHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhcCCeeEEEccccc------CCCCC-CceeEEEEccch
Q 043503 279 IGLDIGGGT-GTFAARMRER-N-VTIITTSLNLDGPFNSFIASRGLISMHISVSQR------LPFFE-NTLDIVHSMHVL 348 (430)
Q Consensus 279 ~VLDIGcGt-G~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~------lpf~d-~sfDlV~~~~~L 348 (430)
+|+=+|||. |.++..+++. | .+|+.+ |.++.-++.|++.+-........+. +.... ..+|+|+-.-..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~ 248 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGS 248 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCC
Confidence 679999998 6666666666 5 466666 7788889999885543333332221 01112 369999874331
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
...+..+.+++||||.+.+.......
T Consensus 249 ---------~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 249 ---------PPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ---------HHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 23788999999999999987766433
No 291
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=81.24 E-value=10 Score=38.12 Aligned_cols=92 Identities=15% Similarity=0.177 Sum_probs=55.7
Q ss_pred EEEEEcCCc-cHHHHHHHHc-CCEEEEEec-CCChhHHHHHHhcCCeeEEEcccccC--CCCCCceeEEEEccchhhcCC
Q 043503 279 IGLDIGGGT-GTFAARMRER-NVTIITTSL-NLDGPFNSFIASRGLISMHISVSQRL--PFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 279 ~VLDIGcGt-G~~a~~La~~-g~~Vv~vdi-D~s~~~le~a~~rg~i~~~~~d~~~l--pf~d~sfDlV~~~~~L~~~~~ 353 (430)
+||=+|+|. |.++..+++. |++|++++- +.++.-.+.+++.|.. .+....+.+ ....+.+|+|+-.-.-
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~-~v~~~~~~~~~~~~~~~~d~vid~~g~----- 248 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT-YVNSSKTPVAEVKLVGEFDLIIEATGV----- 248 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE-EecCCccchhhhhhcCCCCEEEECcCC-----
Confidence 447777754 5677777766 888888753 2255666777766653 221111110 0012468988874211
Q ss_pred chhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
...+.+..++|++||.+++....
T Consensus 249 ----~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 249 ----PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred ----HHHHHHHHHHccCCcEEEEEecC
Confidence 13577888999999999876544
No 292
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.83 E-value=7.5 Score=35.46 Aligned_cols=107 Identities=13% Similarity=0.107 Sum_probs=60.1
Q ss_pred HHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHh----cCC---eeEEEcccccCCCC
Q 043503 264 GIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIAS----RGL---ISMHISVSQRLPFF 335 (430)
Q Consensus 264 ~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~----rg~---i~~~~~d~~~lpf~ 335 (430)
.++.+++.+++.+-.+.+|+|.|.|.+-...++.| ..-+|++ ..+-.....+- .|. ..|..-|.-+..+.
T Consensus 60 Qv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvE--LNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~ 137 (199)
T KOG4058|consen 60 QVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVE--LNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR 137 (199)
T ss_pred HHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCcee--ccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence 36677777665554556999999999988888876 4556764 44433333322 122 45555555444444
Q ss_pred CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 336 ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 336 d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
|-.+=+|+-. ...+++ +-.++..-++.+-.++-..|-
T Consensus 138 dy~~vviFga---es~m~d-----Le~KL~~E~p~nt~vvacRFP 174 (199)
T KOG4058|consen 138 DYRNVVIFGA---ESVMPD-----LEDKLRTELPANTRVVACRFP 174 (199)
T ss_pred ccceEEEeeh---HHHHhh-----hHHHHHhhCcCCCeEEEEecC
Confidence 4333333332 222333 344455567777777665544
No 293
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=80.70 E-value=12 Score=37.86 Aligned_cols=120 Identities=16% Similarity=0.208 Sum_probs=72.1
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCC-eeEEEcccccCCC---CCCceeEEEEccchhhc---
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGL-ISMHISVSQRLPF---FENTLDIVHSMHVLSNW--- 351 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~-i~~~~~d~~~lpf---~d~sfDlV~~~~~L~~~--- 351 (430)
+++|+=||.|.+...+.+.|++++.. +|+++...+.-+.+.. ..+...|...+.. ....+|+++....--.+
T Consensus 5 ~~idLFsG~GG~~lGf~~agf~~~~a-~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~a 83 (328)
T COG0270 5 KVIDLFAGIGGLSLGFEEAGFEIVFA-NEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSIA 83 (328)
T ss_pred eEEeeccCCchHHHHHHhcCCeEEEE-EecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchhhc
Confidence 56999999999999998889887754 4666655554444433 3455555543331 11178999984321111
Q ss_pred -----CCc--hhHHHHHHHHHHhccCCcEEEEee---ccccCcCcHHHHHHHHHHcCCE
Q 043503 352 -----IPD--SMLEFTLYDIYRLLRPGGIFWLDR---FFCFGSQLNETYVPMLDRIGFK 400 (430)
Q Consensus 352 -----~~d--~~l~~~L~ei~RvLrPGG~lvl~~---f~~~~~~~~~~~~~ll~~~Gfk 400 (430)
..| ..+-.-+.++...++| -.|++.. +........+.+.+.+++.||.
T Consensus 84 G~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 84 GKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG 141 (328)
T ss_pred CcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence 111 2233456667777788 4444321 1111223567899999999997
No 294
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=80.47 E-value=2.1 Score=44.48 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=49.4
Q ss_pred CCeeEEEcccccCC--CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 320 GLISMHISVSQRLP--FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 320 g~i~~~~~d~~~lp--f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
..+.++.+++...- .+++++|.++.+..+ .|++++.....+.++.|.++|||.+++-.+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~-Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~ 336 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHM-DWMDPEQLNEEWQELARTARPGARVLWRSAA 336 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchh-hhCCHHHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence 34788888765432 468999999999888 6888888999999999999999999886655
No 295
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=80.11 E-value=5.5 Score=40.36 Aligned_cols=77 Identities=18% Similarity=0.035 Sum_probs=49.4
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-----CCeeEEEcccccCC-----
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-----GLISMHISVSQRLP----- 333 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-----g~i~~~~~d~~~lp----- 333 (430)
++++..+......+.+|.--|.|..+..++++ +.+++++|- ++.+++.++++ +.+.++.+++..+.
T Consensus 10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~Dr--D~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDR--DPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES---HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHH
T ss_pred HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecC--CHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHH
Confidence 34443333333345799999999999999987 688998854 57778888766 34788888776654
Q ss_pred C-CCCceeEEEE
Q 043503 334 F-FENTLDIVHS 344 (430)
Q Consensus 334 f-~d~sfDlV~~ 344 (430)
. .-..+|.|+.
T Consensus 88 ~~~~~~~dgiL~ 99 (310)
T PF01795_consen 88 LNGINKVDGILF 99 (310)
T ss_dssp TTTTS-EEEEEE
T ss_pred ccCCCccCEEEE
Confidence 2 3357888887
No 296
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=79.54 E-value=14 Score=36.56 Aligned_cols=90 Identities=19% Similarity=0.195 Sum_probs=53.7
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcc---cccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISV---SQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d---~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+||-.|+|. |..+..+++. |. +++++ +.++...+.+++.|.-.++... ...+....+.+|+|+.....
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~G~~~v~~~--~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~--- 241 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRAGAAEIVAT--DLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGA--- 241 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCC---
Confidence 3457677765 6666667665 87 67776 5556666666665542222211 11222122358999874221
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+.++.+.|+++|.++...
T Consensus 242 ------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 242 ------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ------HHHHHHHHHHHhcCCEEEEEe
Confidence 235678899999999998643
No 297
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=79.34 E-value=16 Score=34.19 Aligned_cols=90 Identities=23% Similarity=0.184 Sum_probs=54.6
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccC-----CCCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRL-----PFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l-----pf~d~sfDlV~~~~~L~~ 350 (430)
.+||..|+|. |..++.+++. |.+|+++ +.++...+.+++.|...++....... ....+.+|+|+..-.-
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~-- 211 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAGARVIVT--DRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGG-- 211 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEE--cCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCC--
Confidence 4569999885 6666666665 8888887 55555566666555322221111111 1124579999873211
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+..+.+.|+++|.++...
T Consensus 212 -------~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 212 -------PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred -------HHHHHHHHHhcccCCEEEEEc
Confidence 134667788999999988754
No 298
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=78.33 E-value=3.8 Score=35.88 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=45.1
Q ss_pred eeEEEccccc-CCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCE
Q 043503 322 ISMHISVSQR-LPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFK 400 (430)
Q Consensus 322 i~~~~~d~~~-lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk 400 (430)
+.++.+|+.. ++--+..||+|+.-..--.-.|+-=-..++.++.|+++|||.+.-. .+ ...+...+.++||.
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Ty--s~-----a~~Vr~~L~~aGF~ 105 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATY--SS-----AGAVRRALQQAGFE 105 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES---------BHHHHHHHHHCTEE
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEe--ec-----hHHHHHHHHHcCCE
Confidence 4556666633 3322377999988321101011111246999999999999977552 22 24577889999999
Q ss_pred EEEEE
Q 043503 401 KLRWN 405 (430)
Q Consensus 401 ~l~~~ 405 (430)
+.+..
T Consensus 106 v~~~~ 110 (124)
T PF05430_consen 106 VEKVP 110 (124)
T ss_dssp EEEEE
T ss_pred EEEcC
Confidence 88754
No 299
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=77.70 E-value=20 Score=35.18 Aligned_cols=88 Identities=9% Similarity=0.016 Sum_probs=54.7
Q ss_pred EEEEEc--CCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC-----CCCCceeEEEEccchhh
Q 043503 279 IGLDIG--GGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP-----FFENTLDIVHSMHVLSN 350 (430)
Q Consensus 279 ~VLDIG--cGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp-----f~d~sfDlV~~~~~L~~ 350 (430)
+||=.| .|.|.++..+++. |++|+++ +.++.-.+.+++.|.-.++......+. ...+.+|+|+..-.
T Consensus 146 ~vlI~ga~g~vG~~aiqlA~~~G~~vi~~--~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g--- 220 (329)
T cd08294 146 TVVVNGAAGAVGSLVGQIAKIKGCKVIGC--AGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVG--- 220 (329)
T ss_pred EEEEecCccHHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCC---
Confidence 346665 5677888888876 8888877 445556677776665333322111110 12356899886311
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+.+..+.|+++|.++...
T Consensus 221 -------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 221 -------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred -------HHHHHHHHHhhccCCEEEEEc
Confidence 134678899999999998643
No 300
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=77.35 E-value=6.2 Score=39.77 Aligned_cols=99 Identities=14% Similarity=0.146 Sum_probs=61.5
Q ss_pred CccEEEEEcCCccHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhc----------CCeeEEEcccccC-C-CCCCceeE
Q 043503 276 TIRIGLDIGGGTGTFAARMRER-NV-TIITTSLNLDGPFNSFIASR----------GLISMHISVSQRL-P-FFENTLDI 341 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~l-p-f~d~sfDl 341 (430)
..++||=||.|.|.+....... -+ .+.-+++| ....+..++- ..+.++.+|.-.+ . ...++||+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD--~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEID--ENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhh--HHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 3467899999999999888877 22 33444333 4333333221 2277777774332 2 34789999
Q ss_pred EEEccchhhcCCc--hhHHHHHHHHHHhccCCcEEEEe
Q 043503 342 VHSMHVLSNWIPD--SMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 342 V~~~~~L~~~~~d--~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
|+.- .-....|. ...+.++..+.+.||+||++...
T Consensus 199 ii~d-ssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 199 IITD-SSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred EEEe-cCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 9982 11111121 13456888999999999998763
No 301
>PHA01634 hypothetical protein
Probab=77.20 E-value=5.1 Score=35.63 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=30.3
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHh
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIAS 318 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~ 318 (430)
++|+|||.+.|.-+++++-+|+ .|+++ ++++...+..++
T Consensus 30 KtV~dIGA~iGdSaiYF~l~GAK~Vva~--E~~~kl~k~~ee 69 (156)
T PHA01634 30 RTIQIVGADCGSSALYFLLRGASFVVQY--EKEEKLRKKWEE 69 (156)
T ss_pred CEEEEecCCccchhhHHhhcCccEEEEe--ccCHHHHHHHHH
Confidence 5679999999999999999976 56666 666666555544
No 302
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=77.18 E-value=29 Score=34.22 Aligned_cols=88 Identities=7% Similarity=-0.007 Sum_probs=54.6
Q ss_pred EEEEEc--CCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEccc-ccC-----CCCCCceeEEEEccchh
Q 043503 279 IGLDIG--GGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVS-QRL-----PFFENTLDIVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIG--cGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~-~~l-----pf~d~sfDlV~~~~~L~ 349 (430)
+||=.| .|.|.++..+++. |.+|+++ +.++.-.+.+++-|.-.++.... ..+ ....+.+|+|+..-.
T Consensus 141 ~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~--~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G-- 216 (325)
T TIGR02825 141 TVMVNAAAGAVGSVVGQIAKLKGCKVVGA--AGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG-- 216 (325)
T ss_pred EEEEeCCccHHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC--
Confidence 346666 4678888888877 8888876 44566667776666522222111 011 012346899987311
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+.+..++|++||.++...
T Consensus 217 --------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 217 --------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred --------HHHHHHHHHHhCcCcEEEEec
Confidence 123578889999999998754
No 303
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=77.00 E-value=12 Score=37.04 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=49.2
Q ss_pred EEEEcCC-ccHHHHHHHHc-CCEEE-EEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchh
Q 043503 280 GLDIGGG-TGTFAARMRER-NVTII-TTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 280 VLDIGcG-tG~~a~~La~~-g~~Vv-~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
+|=+||| .|.++..+++. |++++ ++ |..+..++.+.+...+ +.... ....+|+|+-.-.-
T Consensus 148 vlV~G~G~vG~~a~q~ak~~G~~~v~~~--~~~~~rl~~a~~~~~i-----~~~~~--~~~g~Dvvid~~G~-------- 210 (308)
T TIGR01202 148 DLIVGHGTLGRLLARLTKAAGGSPPAVW--ETNPRRRDGATGYEVL-----DPEKD--PRRDYRAIYDASGD-------- 210 (308)
T ss_pred EEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHhhhhcccc-----Chhhc--cCCCCCEEEECCCC--------
Confidence 4666764 46677777765 88744 44 5555555555432211 11110 13468999874221
Q ss_pred HHHHHHHHHHhccCCcEEEEeecc
Q 043503 357 LEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 357 l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
...+..+.+.|++||.+++..+.
T Consensus 211 -~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 211 -PSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred -HHHHHHHHHhhhcCcEEEEEeec
Confidence 23567888899999999986654
No 304
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.57 E-value=27 Score=35.24 Aligned_cols=122 Identities=12% Similarity=0.102 Sum_probs=67.6
Q ss_pred EEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCC-CCceeEEEEccchhhc-------
Q 043503 280 GLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFF-ENTLDIVHSMHVLSNW------- 351 (430)
Q Consensus 280 VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~-d~sfDlV~~~~~L~~~------- 351 (430)
|+|+-||.|.+...+.+.|.+++.. +|+++...+.-+.+-.-.++.+|...+... -..+|+++....--.+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a-~e~~~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~~~ 79 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFA-SEIDKYAQKTYEANFGNKVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGKRK 79 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEE-EeCCHHHHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEecCCCcccchhcccC
Confidence 4899999999999998889887643 255555554444331113445666655421 1248999874221111
Q ss_pred -CCchhHHHHHHHHHH---hccCCcEEEEeeccc-----cCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 352 -IPDSMLEFTLYDIYR---LLRPGGIFWLDRFFC-----FGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 352 -~~d~~l~~~L~ei~R---vLrPGG~lvl~~f~~-----~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
..+ ....++.++.| .++|. ++++ +-+. ........+...++..||.+....
T Consensus 80 ~~~d-~r~~L~~~~~r~i~~~~P~-~~v~-ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~ 139 (315)
T TIGR00675 80 GFED-TRGTLFFEIVRILKEKKPK-FFLL-ENVKGLVSHDKGRTFKVIIETLEELGYKVYYKV 139 (315)
T ss_pred CCCC-chhhHHHHHHHHHhhcCCC-EEEe-eccHHHHhcccchHHHHHHHHHHhCCCEEEEEE
Confidence 112 12334444444 44775 3333 2221 112345677888999999875433
No 305
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=76.06 E-value=18 Score=35.56 Aligned_cols=90 Identities=14% Similarity=0.083 Sum_probs=53.5
Q ss_pred cEEEEEcCC-ccHHHHHHHHc-CCE-EEEEecCCChhHHHHHHhcCCeeEEEcccccC----CCCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGG-TGTFAARMRER-NVT-IITTSLNLDGPFNSFIASRGLISMHISVSQRL----PFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcG-tG~~a~~La~~-g~~-Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l----pf~d~sfDlV~~~~~L~~ 350 (430)
.++|-+|+| .|..++.+++. |.+ ++.+ +.++...+.+++.|.-.++..+.... ....+.+|+|+....-
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~-- 236 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNGASRVTVA--EPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGV-- 236 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCC--
Confidence 345777765 35566666665 776 6655 55566667776666532222211111 1134579999973111
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+.++.+.|+++|.++...
T Consensus 237 -------~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 237 -------PKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred -------hHHHHHHHHHHhcCCEEEEEe
Confidence 235778889999999998654
No 306
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=75.42 E-value=7 Score=38.01 Aligned_cols=70 Identities=14% Similarity=0.047 Sum_probs=40.3
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHH---H----HHHhc--------CCeeEEEccccc-CCCCCCceeE
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFN---S----FIASR--------GLISMHISVSQR-LPFFENTLDI 341 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~l---e----~a~~r--------g~i~~~~~d~~~-lpf~d~sfDl 341 (430)
.+|||.-+|-|.-+..++..|++|+++ +-++.+- + .+.+. ..+.++.+|... ++.++++||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~l--Erspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGL--ERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEE--E--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEE--ECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 467999999999999998889999988 5555332 1 11111 127888888644 5566899999
Q ss_pred EEEccchh
Q 043503 342 VHSMHVLS 349 (430)
Q Consensus 342 V~~~~~L~ 349 (430)
|..-..+.
T Consensus 155 VY~DPMFp 162 (234)
T PF04445_consen 155 VYFDPMFP 162 (234)
T ss_dssp EEE--S--
T ss_pred EEECCCCC
Confidence 99955553
No 307
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=75.26 E-value=16 Score=35.85 Aligned_cols=82 Identities=18% Similarity=0.137 Sum_probs=51.6
Q ss_pred EEEcCCc--cHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHH
Q 043503 281 LDIGGGT--GTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLE 358 (430)
Q Consensus 281 LDIGcGt--G~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~ 358 (430)
.=||+|. |.++..+.+.|.+|+++ |.++...+.+.+.|.+.....+.+. -...|+|+..- +.....
T Consensus 4 ~IIG~G~mG~sla~~L~~~g~~V~~~--d~~~~~~~~a~~~g~~~~~~~~~~~----~~~aDlVilav------p~~~~~ 71 (279)
T PRK07417 4 GIVGLGLIGGSLGLDLRSLGHTVYGV--SRRESTCERAIERGLVDEASTDLSL----LKDCDLVILAL------PIGLLL 71 (279)
T ss_pred EEEeecHHHHHHHHHHHHCCCEEEEE--ECCHHHHHHHHHCCCcccccCCHhH----hcCCCEEEEcC------CHHHHH
Confidence 4467775 56788887889999988 5556667777777764322222111 13578888742 332355
Q ss_pred HHHHHHHHhccCCcEE
Q 043503 359 FTLYDIYRLLRPGGIF 374 (430)
Q Consensus 359 ~~L~ei~RvLrPGG~l 374 (430)
.++.++...++|+-.+
T Consensus 72 ~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 72 PPSEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHHHhCCCCcEE
Confidence 6778888888777433
No 308
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=75.06 E-value=5.7 Score=36.70 Aligned_cols=51 Identities=22% Similarity=0.202 Sum_probs=33.8
Q ss_pred HHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHH
Q 043503 264 GIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIA 317 (430)
Q Consensus 264 ~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~ 317 (430)
.+++++..... ...+|||.=||+|+.+.+..+.|-+.+|+ |+++...+.|.
T Consensus 180 l~~~lI~~~t~-~gdiVlDpF~GSGTT~~aa~~l~R~~ig~--E~~~~y~~~a~ 230 (231)
T PF01555_consen 180 LIERLIKASTN-PGDIVLDPFAGSGTTAVAAEELGRRYIGI--EIDEEYCEIAK 230 (231)
T ss_dssp HHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEE--ESSHHHHHHHH
T ss_pred HHHHHHHhhhc-cceeeehhhhccChHHHHHHHcCCeEEEE--eCCHHHHHHhc
Confidence 34555543221 12458999999999999998889999998 55577666664
No 309
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=74.79 E-value=15 Score=39.42 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=66.7
Q ss_pred eeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc----C--CEEEEEecCCChhHHHHHHhc----CC--
Q 043503 254 WLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER----N--VTIITTSLNLDGPFNSFIASR----GL-- 321 (430)
Q Consensus 254 ~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~----g--~~Vv~vdiD~s~~~le~a~~r----g~-- 321 (430)
++.+...... +-+++.. ....+|.|-.||+|.+.....+. . ....|. +....+...++.+ |.
T Consensus 168 fyTP~~v~~l-iv~~l~~---~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGq--E~~~~t~~l~~mN~~lhgi~~ 241 (489)
T COG0286 168 FYTPREVSEL-IVELLDP---EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQ--EINDTTYRLAKMNLILHGIEG 241 (489)
T ss_pred cCChHHHHHH-HHHHcCC---CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEE--eCCHHHHHHHHHHHHHhCCCc
Confidence 3444444443 3344433 22336799999999887766654 1 455666 5556666666544 32
Q ss_pred -eeEEEcccccCC-C----CCCceeEEEEccchh--hcCC--------------------chhHHHHHHHHHHhccCCcE
Q 043503 322 -ISMHISVSQRLP-F----FENTLDIVHSMHVLS--NWIP--------------------DSMLEFTLYDIYRLLRPGGI 373 (430)
Q Consensus 322 -i~~~~~d~~~lp-f----~d~sfDlV~~~~~L~--~~~~--------------------d~~l~~~L~ei~RvLrPGG~ 373 (430)
+....+|.-.-| . ..+.||.|+++..+. .|.. ...-..++..+.+.|+|||+
T Consensus 242 ~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~ 321 (489)
T COG0286 242 DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGR 321 (489)
T ss_pred cccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCce
Confidence 234444433323 2 336799999965442 1211 11226789999999999885
Q ss_pred EE
Q 043503 374 FW 375 (430)
Q Consensus 374 lv 375 (430)
.-
T Consensus 322 aa 323 (489)
T COG0286 322 AA 323 (489)
T ss_pred EE
Confidence 43
No 310
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=74.71 E-value=15 Score=36.32 Aligned_cols=97 Identities=20% Similarity=0.240 Sum_probs=60.3
Q ss_pred cEEEEEcCCccHHHHHHHHc----C--CEEEEEecCCChhHHHHHH-----hc-CC-eeEEEcccc----cCCCCCCcee
Q 043503 278 RIGLDIGGGTGTFAARMRER----N--VTIITTSLNLDGPFNSFIA-----SR-GL-ISMHISVSQ----RLPFFENTLD 340 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~----g--~~Vv~vdiD~s~~~le~a~-----~r-g~-i~~~~~d~~----~lpf~d~sfD 340 (430)
.+.+|+|.|+..=+..+.+. | ...+.+ |+++..++.-. +. ++ +.-+++|.+ .+| .-+.==
T Consensus 80 ~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpi--Dv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~Rl 156 (321)
T COG4301 80 CTLVELGSGNSTKTRILLDALAHRGSLLRYVPI--DVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGRRL 156 (321)
T ss_pred ceEEEecCCccHHHHHHHHHhhhcCCcceeeee--cccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCeEE
Confidence 34599999999877766654 4 344544 77776653322 22 33 333445532 233 111222
Q ss_pred EEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 341 IVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 341 lV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+++....+.++.|+ ....+|..+..+|+||-+|++..
T Consensus 157 ~~flGStlGN~tp~-e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPG-ECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecccccCCChH-HHHHHHHHHHhcCCCcceEEEec
Confidence 34445667777776 47889999999999999998753
No 311
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=74.62 E-value=22 Score=35.16 Aligned_cols=89 Identities=17% Similarity=0.129 Sum_probs=54.3
Q ss_pred EEEEEcCCc-cHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEccccc----CC--CCCCceeEEEEccchhh
Q 043503 279 IGLDIGGGT-GTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQR----LP--FFENTLDIVHSMHVLSN 350 (430)
Q Consensus 279 ~VLDIGcGt-G~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~----lp--f~d~sfDlV~~~~~L~~ 350 (430)
.||-.|+|. |..++.+++. |.+|+++ ..++...+.+++.|.-.++...... +. ..+..+|+|+....-
T Consensus 162 ~vLI~g~g~vG~~a~~lA~~~g~~v~~~--~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g~-- 237 (337)
T cd08261 162 TVLVVGAGPIGLGVIQVAKARGARVIVV--DIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATGN-- 237 (337)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEE--CCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCCC--
Confidence 347778764 6777777776 8888877 4446666666655542222211111 11 134568999874111
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+.++.+.|+++|.++...
T Consensus 238 -------~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 238 -------PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred -------HHHHHHHHHHHhcCCEEEEEc
Confidence 235778899999999987643
No 312
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=73.66 E-value=30 Score=36.73 Aligned_cols=137 Identities=13% Similarity=0.115 Sum_probs=77.0
Q ss_pred cHHHHHHHHcCCEEEEEecCCC-hhHHHHHH---hcCCeeEEEcccccCC----------CCCCceeEEEEccchhhcCC
Q 043503 288 GTFAARMRERNVTIITTSLNLD-GPFNSFIA---SRGLISMHISVSQRLP----------FFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 288 G~~a~~La~~g~~Vv~vdiD~s-~~~le~a~---~rg~i~~~~~d~~~lp----------f~d~sfDlV~~~~~L~~~~~ 353 (430)
|-+|.++.++|.+|..+..|.- +...+..+ +.-.++|+..+.+.-| +....||+|+.--.-++.++
T Consensus 118 ~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~id 197 (451)
T COG0541 118 GKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHID 197 (451)
T ss_pred HHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccccc
Confidence 4566666666777766655643 33333333 2222566655444434 23567999999666656564
Q ss_pred chhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE-ecccccCCCchhHHHhHhhccCCC
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN-VGMKLDRGVKKNEWYFSAVLEKPM 429 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~-~~~k~~~g~~~~~~~lsa~leKp~ 429 (430)
+ .+-.-+.++..+++|.=.+++.+-.. +.+-...-...-+..|+.-+-++ ..... +.-...-+.+...+|.
T Consensus 198 e-~Lm~El~~Ik~~~~P~E~llVvDam~-GQdA~~~A~aF~e~l~itGvIlTKlDGda---RGGaALS~~~~tg~PI 269 (451)
T COG0541 198 E-ELMDELKEIKEVINPDETLLVVDAMI-GQDAVNTAKAFNEALGITGVILTKLDGDA---RGGAALSARAITGKPI 269 (451)
T ss_pred H-HHHHHHHHHHhhcCCCeEEEEEeccc-chHHHHHHHHHhhhcCCceEEEEcccCCC---cchHHHhhHHHHCCCe
Confidence 4 57778899999999999888766442 22222233334445666644433 22222 2233444455666664
No 313
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=73.23 E-value=27 Score=34.89 Aligned_cols=88 Identities=13% Similarity=0.004 Sum_probs=53.6
Q ss_pred cEEEEEcCC-ccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCch
Q 043503 278 RIGLDIGGG-TGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 278 r~VLDIGcG-tG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
.+||=.|+| .|.++..+++. |++|+++ +.++.-.+.+++-|.-.++.. ... ..+.+|+++-....
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~~G~~vi~~--~~~~~~~~~a~~~Ga~~vi~~--~~~--~~~~~d~~i~~~~~------- 233 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALAQGATVHVM--TRGAAARRLALALGAASAGGA--YDT--PPEPLDAAILFAPA------- 233 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCCeEEEE--eCChHHHHHHHHhCCceeccc--ccc--CcccceEEEECCCc-------
Confidence 345777754 45566666665 8888877 444555777877775322211 111 12357876542211
Q ss_pred hHHHHHHHHHHhccCCcEEEEeecc
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
...+....++|++||.+++....
T Consensus 234 --~~~~~~~~~~l~~~G~~v~~G~~ 256 (329)
T TIGR02822 234 --GGLVPPALEALDRGGVLAVAGIH 256 (329)
T ss_pred --HHHHHHHHHhhCCCcEEEEEecc
Confidence 13577888999999999886643
No 314
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=72.00 E-value=26 Score=35.28 Aligned_cols=91 Identities=16% Similarity=-0.015 Sum_probs=53.5
Q ss_pred EEEEEcCCc-cHHHHHHHHc-CCE-EEEEecCCChhHHHHHHhcCCeeEEEcccccC----C--CCCCceeEEEEccchh
Q 043503 279 IGLDIGGGT-GTFAARMRER-NVT-IITTSLNLDGPFNSFIASRGLISMHISVSQRL----P--FFENTLDIVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIGcGt-G~~a~~La~~-g~~-Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l----p--f~d~sfDlV~~~~~L~ 349 (430)
+||=.|+|. |..+..+++. |++ |+++ +.++.-.+.+++-|.-.++....... . .....+|+|+-.-..
T Consensus 179 ~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~--~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~- 255 (358)
T TIGR03451 179 SVAVIGCGGVGDAAIAGAALAGASKIIAV--DIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR- 255 (358)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC-
Confidence 447677643 5566666665 874 7777 55666777777766522222111111 0 122458998863211
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
...+.+..+.+++||.+++....
T Consensus 256 --------~~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 256 --------PETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred --------HHHHHHHHHHhccCCEEEEECCC
Confidence 13466778899999999876543
No 315
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=71.58 E-value=17 Score=32.75 Aligned_cols=111 Identities=18% Similarity=0.194 Sum_probs=61.2
Q ss_pred EcCCcc--HHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHH
Q 043503 283 IGGGTG--TFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFT 360 (430)
Q Consensus 283 IGcGtG--~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~ 360 (430)
||.|.= .++..|++.|+.|++. |.++...+...+.|. . ...+...+- ...|+|+.. + .++...+.+
T Consensus 7 IGlG~mG~~~a~~L~~~g~~v~~~--d~~~~~~~~~~~~g~-~-~~~s~~e~~---~~~dvvi~~--v---~~~~~v~~v 74 (163)
T PF03446_consen 7 IGLGNMGSAMARNLAKAGYEVTVY--DRSPEKAEALAEAGA-E-VADSPAEAA---EQADVVILC--V---PDDDAVEAV 74 (163)
T ss_dssp E--SHHHHHHHHHHHHTTTEEEEE--ESSHHHHHHHHHTTE-E-EESSHHHHH---HHBSEEEE---S---SSHHHHHHH
T ss_pred EchHHHHHHHHHHHHhcCCeEEee--ccchhhhhhhHHhhh-h-hhhhhhhHh---hcccceEee--c---ccchhhhhh
Confidence 555432 3555555569999988 555655555555552 1 222222221 235988883 1 222346677
Q ss_pred HHH--HHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEec
Q 043503 361 LYD--IYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 361 L~e--i~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
+.+ +...|++|..++-.. ...++....+.+.+...|...+.-.+.
T Consensus 75 ~~~~~i~~~l~~g~iiid~s--T~~p~~~~~~~~~~~~~g~~~vdapV~ 121 (163)
T PF03446_consen 75 LFGENILAGLRPGKIIIDMS--TISPETSRELAERLAAKGVRYVDAPVS 121 (163)
T ss_dssp HHCTTHGGGS-TTEEEEE-S--S--HHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhhhHHhhccccceEEEecC--Ccchhhhhhhhhhhhhccceeeeeeee
Confidence 777 788888777665432 122334466788888899887765543
No 316
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=71.42 E-value=35 Score=33.50 Aligned_cols=89 Identities=15% Similarity=0.017 Sum_probs=53.3
Q ss_pred EEEEEcCC-ccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC-CCCCceeEEEEccchhhcCCch
Q 043503 279 IGLDIGGG-TGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP-FFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 279 ~VLDIGcG-tG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp-f~d~sfDlV~~~~~L~~~~~d~ 355 (430)
.||-.|+| .|..+..+++. |.+|+.+ +.++...+.+++.|.-.++........ -..+.+|+|+....-
T Consensus 165 ~vlI~g~g~iG~~~~~~a~~~G~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~------- 235 (330)
T cd08245 165 RVAVLGIGGLGHLAVQYARAMGFETVAI--TRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVS------- 235 (330)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCc-------
Confidence 44777886 67777777766 8888877 445666677665554222221111100 012468988863111
Q ss_pred hHHHHHHHHHHhccCCcEEEEee
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+.++.+.|+++|.++...
T Consensus 236 --~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 236 --GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred --HHHHHHHHHhcccCCEEEEEC
Confidence 235678889999999987643
No 317
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=71.26 E-value=15 Score=35.74 Aligned_cols=73 Identities=22% Similarity=0.233 Sum_probs=45.0
Q ss_pred HHHHHHHcC--CEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHh
Q 043503 290 FAARMRERN--VTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRL 367 (430)
Q Consensus 290 ~a~~La~~g--~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~Rv 367 (430)
+|..|.++| ++|++. |.++...+.+.+.|.+.-...+.+.+ ..+|+|+..-... ....++.++...
T Consensus 1 ~A~aL~~~g~~~~v~g~--d~~~~~~~~a~~~g~~~~~~~~~~~~----~~~DlvvlavP~~------~~~~~l~~~~~~ 68 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGY--DRDPETLEAALELGIIDEASTDIEAV----EDADLVVLAVPVS------AIEDVLEEIAPY 68 (258)
T ss_dssp HHHHHHHTTTTSEEEEE---SSHHHHHHHHHTTSSSEEESHHHHG----GCCSEEEE-S-HH------HHHHHHHHHHCG
T ss_pred ChHHHHhCCCCeEEEEE--eCCHHHHHHHHHCCCeeeccCCHhHh----cCCCEEEEcCCHH------HHHHHHHHhhhh
Confidence 567788886 788888 66678888888888865544432222 2359988753332 255666666666
Q ss_pred ccCCcEE
Q 043503 368 LRPGGIF 374 (430)
Q Consensus 368 LrPGG~l 374 (430)
+++|+.+
T Consensus 69 ~~~~~iv 75 (258)
T PF02153_consen 69 LKPGAIV 75 (258)
T ss_dssp S-TTSEE
T ss_pred cCCCcEE
Confidence 6666543
No 318
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=70.83 E-value=25 Score=35.67 Aligned_cols=89 Identities=15% Similarity=0.093 Sum_probs=52.9
Q ss_pred EEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEccccc----CC-CCCCceeEEEEccchhhc
Q 043503 280 GLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQR----LP-FFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 280 VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~----lp-f~d~sfDlV~~~~~L~~~ 351 (430)
||=.|+|. |.++..+++. |+ +|+++ +.++...+.+++-|...++....+. +. ...+.+|+|+..-.-
T Consensus 195 VlV~G~G~vG~~a~~lak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~--- 269 (371)
T cd08281 195 VAVVGLGGVGLSALLGAVAAGASQVVAV--DLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGS--- 269 (371)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCcEEEE--cCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCC---
Confidence 35577643 5566666665 87 58777 5667777787776653333221111 10 112368999873211
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
...+....+.|++||.+++...
T Consensus 270 ------~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 270 ------VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred ------hHHHHHHHHHHhcCCEEEEEcc
Confidence 1356677889999999987553
No 319
>PRK11524 putative methyltransferase; Provisional
Probab=70.58 E-value=10 Score=37.52 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=37.9
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR 319 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r 319 (430)
++.++.... ....+|||.=||+|+.+....+.|-+.+|+ |+++...+.|.+|
T Consensus 198 ~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~--Ei~~~Y~~~a~~R 249 (284)
T PRK11524 198 LKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGRKFIGI--EINSEYIKMGLRR 249 (284)
T ss_pred HHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCCCEEEE--eCCHHHHHHHHHH
Confidence 444444332 122457999999999999888889999998 5567777777776
No 320
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=70.38 E-value=39 Score=33.61 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=62.1
Q ss_pred EEEcCCc--cHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHH
Q 043503 281 LDIGGGT--GTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLE 358 (430)
Q Consensus 281 LDIGcGt--G~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~ 358 (430)
-=||+|. +.++..+++.|.+|++. |.++...+.+.+.+.... .+.+.+.-.....|+|+.. +++...+
T Consensus 4 g~IGlG~mG~~la~~L~~~g~~V~~~--dr~~~~~~~l~~~g~~~~--~s~~~~~~~~~~~dvIi~~------vp~~~~~ 73 (298)
T TIGR00872 4 GLIGLGRMGANIVRRLAKRGHDCVGY--DHDQDAVKAMKEDRTTGV--ANLRELSQRLSAPRVVWVM------VPHGIVD 73 (298)
T ss_pred EEEcchHHHHHHHHHHHHCCCEEEEE--ECCHHHHHHHHHcCCccc--CCHHHHHhhcCCCCEEEEE------cCchHHH
Confidence 3367665 24666677778898887 555555555555553221 1111111011245888874 2333467
Q ss_pred HHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 359 FTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 359 ~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.++.++...|++|- ++++. ............+.++..|...+.-.
T Consensus 74 ~v~~~l~~~l~~g~-ivid~-st~~~~~t~~~~~~~~~~g~~~vda~ 118 (298)
T TIGR00872 74 AVLEELAPTLEKGD-IVIDG-GNSYYKDSLRRYKLLKEKGIHLLDCG 118 (298)
T ss_pred HHHHHHHhhCCCCC-EEEEC-CCCCcccHHHHHHHHHhcCCeEEecC
Confidence 78888888898875 44542 11111233445556777787766543
No 321
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=70.36 E-value=15 Score=39.78 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=55.4
Q ss_pred cEEEEEcCCcc-HHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEccccc-----------------------C
Q 043503 278 RIGLDIGGGTG-TFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQR-----------------------L 332 (430)
Q Consensus 278 r~VLDIGcGtG-~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~-----------------------l 332 (430)
.+|+=+|+|.- ..++.++.. |..|+.+ |.++..++.+++-|. .++..+... +
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~--d~~~~rle~a~~lGa-~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAF--DTRPEVKEQVQSMGA-EFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHcCC-eEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 45699999875 555555554 8888877 555666777776554 222222110 1
Q ss_pred CCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEE
Q 043503 333 PFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 333 pf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lv 375 (430)
+-.-..+|+|++.-.. ...+. ..-+.+++.+.+|||+.++
T Consensus 242 ~e~~~~~DIVI~Tali-pG~~a--P~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 242 AAQAKEVDIIITTALI-PGKPA--PKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHhCCCCEEEECccc-CCCCC--CeeehHHHHhhCCCCCEEE
Confidence 1012469999885322 22222 3346788999999999875
No 322
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=69.48 E-value=6.4 Score=36.32 Aligned_cols=50 Identities=24% Similarity=0.312 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhccCCcEEEEeeccccCcCcHH-HHHHHHHHcC-CEEEEEEeccc
Q 043503 357 LEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNE-TYVPMLDRIG-FKKLRWNVGMK 409 (430)
Q Consensus 357 l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~-~~~~ll~~~G-fk~l~~~~~~k 409 (430)
+...+.++.|+|+|||.+++. +....... ....+.+..| |....+.+=.+
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~---~~~~~~~~~~~~~~~~~~g~~~~~~~iiW~K 86 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIF---IDDREIAGFLFELALEIFGGFFLRNEIIWNK 86 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE---E-CCEECTHHHHHHHHHHTT-EEEEEEEEE-
T ss_pred HHHHHHHHHhhcCCCeeEEEE---ecchhhhHHHHHHHHHHhhhhheeccceeEe
Confidence 677899999999999999884 22222222 3445566667 87665544333
No 323
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=68.89 E-value=48 Score=33.47 Aligned_cols=91 Identities=9% Similarity=0.047 Sum_probs=55.4
Q ss_pred cEEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHH-hcCCeeEEEcccc-cC-----CCCCCceeEEEEccc
Q 043503 278 RIGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIA-SRGLISMHISVSQ-RL-----PFFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~-~rg~i~~~~~d~~-~l-----pf~d~sfDlV~~~~~ 347 (430)
.+||=.|+ |.|.++..+++. |++|+++ +.++.-.+.++ +-|.-.++....+ .+ ....+.+|+|+..-.
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~--~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG 237 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLHGCYVVGS--AGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVG 237 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEE--cCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCC
Confidence 34577775 578888888876 8888877 44555566665 4554222221111 11 011246899987311
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
...+.+..+.|++||.+++....
T Consensus 238 ----------~~~~~~~~~~l~~~G~iv~~G~~ 260 (348)
T PLN03154 238 ----------GDMLDAALLNMKIHGRIAVCGMV 260 (348)
T ss_pred ----------HHHHHHHHHHhccCCEEEEECcc
Confidence 12567888999999999876543
No 324
>PTZ00357 methyltransferase; Provisional
Probab=68.75 E-value=17 Score=40.83 Aligned_cols=94 Identities=14% Similarity=0.130 Sum_probs=59.2
Q ss_pred EEEEEcCCccHHHHHHHHc----C--CEEEEEecCCChhHH-HHH--Hhc----------CCeeEEEcccccCCCCC---
Q 043503 279 IGLDIGGGTGTFAARMRER----N--VTIITTSLNLDGPFN-SFI--ASR----------GLISMHISVSQRLPFFE--- 336 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~----g--~~Vv~vdiD~s~~~l-e~a--~~r----------g~i~~~~~d~~~lpf~d--- 336 (430)
+|+=+|+|-|-+.....+. | ++|++++=|+.+... ... ... +.|.++..|++.+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5799999999765554433 4 566666444322211 111 111 22788999988875331
Q ss_pred --------CceeEEEEccchhhcCCchhHHHHHHHHHHhccC----CcE
Q 043503 337 --------NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRP----GGI 373 (430)
Q Consensus 337 --------~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrP----GG~ 373 (430)
+.+|+|++ ..|..+-+.+.-.+-|..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 36999999 6666655555556678888888876 775
No 325
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=68.75 E-value=36 Score=37.50 Aligned_cols=83 Identities=10% Similarity=0.064 Sum_probs=53.8
Q ss_pred CCccHHHHHHHH----cCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC----CCCCceeEEEEccchhhcCCchh
Q 043503 285 GGTGTFAARMRE----RNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP----FFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 285 cGtG~~a~~La~----~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp----f~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
||.|.++..+++ +|..++.+| .++...+.+++.|. ..+.+|..+.. ..-+..|+|++. .++..
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID--~d~~~v~~~~~~g~-~v~~GDat~~~~L~~agi~~A~~vv~~------~~d~~ 476 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLE--RDISAVNLMRKYGY-KVYYGDATQLELLRAAGAEKAEAIVIT------CNEPE 476 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEE--CCHHHHHHHHhCCC-eEEEeeCCCHHHHHhcCCccCCEEEEE------eCCHH
Confidence 667776666654 378888884 45666777777664 67888876533 123467888773 23323
Q ss_pred HHHHHHHHHHhccCCcEEEE
Q 043503 357 LEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 357 l~~~L~ei~RvLrPGG~lvl 376 (430)
....+-...|-+.|...++.
T Consensus 477 ~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 477 DTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred HHHHHHHHHHHHCCCCeEEE
Confidence 44456667777889888776
No 326
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=68.59 E-value=37 Score=33.79 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=50.5
Q ss_pred cEEEEEcCCc--cHHHHHHHHcCC--EEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCC
Q 043503 278 RIGLDIGGGT--GTFAARMRERNV--TIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 278 r~VLDIGcGt--G~~a~~La~~g~--~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~ 353 (430)
.+|.=||+|. +.++..+.+.|. .|+++ |.++...+.+.+.|.......+.... -...|+|+..-..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~--dr~~~~~~~a~~~g~~~~~~~~~~~~---~~~aDvViiavp~----- 76 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGA--DRSAETRARARELGLGDRVTTSAAEA---VKGADLVILCVPV----- 76 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEE--ECCHHHHHHHHhCCCCceecCCHHHH---hcCCCEEEECCCH-----
Confidence 3456778776 346666666663 77777 55566666666666532222221111 1347998884322
Q ss_pred chhHHHHHHHHHHhccCCcEEE
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lv 375 (430)
.....++.++...+++|..+.
T Consensus 77 -~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 77 -GASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred -HHHHHHHHHHHhhCCCCCEEE
Confidence 224566777777888887553
No 327
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=67.89 E-value=17 Score=37.76 Aligned_cols=90 Identities=14% Similarity=0.180 Sum_probs=59.0
Q ss_pred EEEEEcCCccHHHHHHHHc--C-CEEEEEecCCChhHHHHHHhc----CC----eeEEEcccccCC-CCCCceeEEEEcc
Q 043503 279 IGLDIGGGTGTFAARMRER--N-VTIITTSLNLDGPFNSFIASR----GL----ISMHISVSQRLP-FFENTLDIVHSMH 346 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~--g-~~Vv~vdiD~s~~~le~a~~r----g~----i~~~~~d~~~lp-f~d~sfDlV~~~~ 346 (430)
++||.=+|+|.=+++.+.. + .+|+.- |+++...+.++++ ++ +.+...|+..+= .....||+|-. .
T Consensus 52 ~~lDalaasGvR~iRy~~E~~~~~~v~~N--Di~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl-D 128 (377)
T PF02005_consen 52 RVLDALAASGVRGIRYAKELAGVDKVTAN--DISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL-D 128 (377)
T ss_dssp EEEETT-TTSHHHHHHHHH-SSECEEEEE--ES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred eEEeccccccHHHHHHHHHcCCCCEEEEe--cCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe-C
Confidence 5699999999888888766 3 466666 5556656555544 33 566677776542 24678999987 2
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.+ +....+|..+.+.++.||++.++
T Consensus 129 Pf------GSp~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 129 PF------GSPAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp -S------S--HHHHHHHHHHEEEEEEEEEE
T ss_pred CC------CCccHhHHHHHHHhhcCCEEEEe
Confidence 22 23567999999999999999885
No 328
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=67.84 E-value=30 Score=34.75 Aligned_cols=90 Identities=12% Similarity=0.057 Sum_probs=51.0
Q ss_pred cEEEEEcCCc-cHHHHHHHHc---CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCC
Q 043503 278 RIGLDIGGGT-GTFAARMRER---NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~ 353 (430)
.+||=+|||. |.++..++++ +.+|+++ +.++.-++.+++-+.. +..+ .+. .+..+|+|+-.-.- +
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~--~~~~~k~~~a~~~~~~--~~~~--~~~-~~~g~d~viD~~G~----~ 233 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLVVF--GKHQEKLDLFSFADET--YLID--DIP-EDLAVDHAFECVGG----R 233 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEEEE--eCcHhHHHHHhhcCce--eehh--hhh-hccCCcEEEECCCC----C
Confidence 3457788754 4455555553 3578777 4455556666543322 1111 111 11248988863221 0
Q ss_pred chhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
.....+.+..++|++||.+++..+.
T Consensus 234 --~~~~~~~~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 234 --GSQSAINQIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred --ccHHHHHHHHHhCcCCcEEEEEeec
Confidence 0234678889999999999886643
No 329
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=67.04 E-value=50 Score=33.40 Aligned_cols=91 Identities=18% Similarity=0.147 Sum_probs=55.7
Q ss_pred EEEEEc--CCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCC---eeEEEccc-ccCC--CCCCceeEEEEccchh
Q 043503 279 IGLDIG--GGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGL---ISMHISVS-QRLP--FFENTLDIVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIG--cGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~---i~~~~~d~-~~lp--f~d~sfDlV~~~~~L~ 349 (430)
+||=.| .|.|.++..|++. |++++++ .-++.-.+.+++.|- +.+...|+ +... .....+|+|+..-.
T Consensus 145 ~VLV~gaaGgVG~~aiQlAk~~G~~~v~~--~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG-- 220 (326)
T COG0604 145 TVLVHGAAGGVGSAAIQLAKALGATVVAV--VSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVG-- 220 (326)
T ss_pred EEEEecCCchHHHHHHHHHHHcCCcEEEE--ecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCC--
Confidence 347666 5778999999988 7565555 223333446666665 22222221 1111 22346999998421
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
...+.+..+.|++||.++......
T Consensus 221 --------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 221 --------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred --------HHHHHHHHHHhccCCEEEEEecCC
Confidence 245777889999999998866543
No 330
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=66.76 E-value=11 Score=39.93 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=27.1
Q ss_pred EEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHH
Q 043503 279 IGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIA 317 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~ 317 (430)
.|||||.|||.+....+..|+ .|+++ +.=.+|.+.|+
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~--EvfkPM~d~ar 106 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTAC--EVFKPMVDLAR 106 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEee--hhhchHHHHHH
Confidence 579999999999987777765 45555 54467776665
No 331
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=66.73 E-value=42 Score=33.26 Aligned_cols=88 Identities=9% Similarity=0.053 Sum_probs=52.9
Q ss_pred EEEEEc--CCccHHHHHHHHc-CC-EEEEEecCCChhHHHHHHh-cCCeeEEEcccccCC-----CCCCceeEEEEccch
Q 043503 279 IGLDIG--GGTGTFAARMRER-NV-TIITTSLNLDGPFNSFIAS-RGLISMHISVSQRLP-----FFENTLDIVHSMHVL 348 (430)
Q Consensus 279 ~VLDIG--cGtG~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~-rg~i~~~~~d~~~lp-----f~d~sfDlV~~~~~L 348 (430)
+||=.| .|.|.++..+++. |+ +|+++ +.++...+.+++ -|.-.++......+. ..++.+|+|+..-.
T Consensus 157 ~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~--~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g- 233 (345)
T cd08293 157 TMVVSGAAGACGSLAGQIGRLLGCSRVVGI--CGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVG- 233 (345)
T ss_pred EEEEECCCcHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCC-
Confidence 446666 4678888888876 87 78877 445555566654 454232222111110 11356999986311
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
. ..+.+..+.|++||.++...
T Consensus 234 -----~----~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 234 -----G----EISDTVISQMNENSHIILCG 254 (345)
T ss_pred -----c----HHHHHHHHHhccCCEEEEEe
Confidence 1 12467889999999998644
No 332
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=66.61 E-value=36 Score=33.01 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=53.3
Q ss_pred EEEEEcCCc-cHHHHHHHHc-CCE-EEEEecCCChhHHHHHHhcCCeeEEEcc-c-ccCC--CCCCceeEEEEccchhhc
Q 043503 279 IGLDIGGGT-GTFAARMRER-NVT-IITTSLNLDGPFNSFIASRGLISMHISV-S-QRLP--FFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 279 ~VLDIGcGt-G~~a~~La~~-g~~-Vv~vdiD~s~~~le~a~~rg~i~~~~~d-~-~~lp--f~d~sfDlV~~~~~L~~~ 351 (430)
+||=+|+|. |.+++.+++. |++ |+++ +.++.-.+.+++-|.-.++... . +.+. .....+|+|+-.-.-
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~--- 197 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGA--- 197 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCC---
Confidence 346677643 4555556655 876 7776 5566667777776652222111 0 1000 123458988873111
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
...+.+..+.|+|||.+++....
T Consensus 198 ------~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 198 ------TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred ------hHHHHHHHHHhcCCCEEEEeccC
Confidence 23577888999999999887644
No 333
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=66.51 E-value=41 Score=33.36 Aligned_cols=89 Identities=15% Similarity=0.006 Sum_probs=51.5
Q ss_pred EEEEcCC-ccHHHHHHHHc-CCE-EEEEecCCChhHHHHHHhcCCeeEEEcccc---cCC--CCCCceeEEEEccchhhc
Q 043503 280 GLDIGGG-TGTFAARMRER-NVT-IITTSLNLDGPFNSFIASRGLISMHISVSQ---RLP--FFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 280 VLDIGcG-tG~~a~~La~~-g~~-Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~---~lp--f~d~sfDlV~~~~~L~~~ 351 (430)
||=+|+| .|.++..+++. |.+ |+++ +.++...+.+++-|.-.++..... .+. .....+|+|+....-
T Consensus 167 vlV~G~G~vG~~~~~~ak~~G~~~vi~~--~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~--- 241 (339)
T cd08239 167 VLVVGAGPVGLGALMLARALGAEDVIGV--DPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGN--- 241 (339)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCC---
Confidence 3556654 34555556655 877 8776 555666777776665222221111 111 123469999863211
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
...+.+..+.|+++|.+++...
T Consensus 242 ------~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 242 ------TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred ------HHHHHHHHHHhhcCCEEEEEcC
Confidence 1245677889999999987554
No 334
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=66.49 E-value=43 Score=33.41 Aligned_cols=92 Identities=15% Similarity=0.143 Sum_probs=51.9
Q ss_pred EEEEEcCCc-cHHHHHHHHc-CCE-EEEEecCCChhHHHHHHhcCCeeEEEccc---ccCC--CCCCcee-EEEEccchh
Q 043503 279 IGLDIGGGT-GTFAARMRER-NVT-IITTSLNLDGPFNSFIASRGLISMHISVS---QRLP--FFENTLD-IVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIGcGt-G~~a~~La~~-g~~-Vv~vdiD~s~~~le~a~~rg~i~~~~~d~---~~lp--f~d~sfD-lV~~~~~L~ 349 (430)
+||=.|+|. |.++..+++. |.+ |+++ +.++.-.+.+++-|.-.++.... +.+. .....+| +|+-. .
T Consensus 163 ~vlV~G~g~vG~~~~~~a~~~G~~~v~~~--~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~--~- 237 (347)
T PRK10309 163 NVIIIGAGTIGLLAIQCAVALGAKSVTAI--DINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILET--A- 237 (347)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEE--CCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEEC--C-
Confidence 446667643 4555556655 886 5666 55666677776666522222111 0000 1234577 66542 1
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
. -...+.+..+.|++||.+++..+..
T Consensus 238 ---G---~~~~~~~~~~~l~~~G~iv~~G~~~ 263 (347)
T PRK10309 238 ---G---VPQTVELAIEIAGPRAQLALVGTLH 263 (347)
T ss_pred ---C---CHHHHHHHHHHhhcCCEEEEEccCC
Confidence 1 1236778889999999999876553
No 335
>PRK13699 putative methylase; Provisional
Probab=65.85 E-value=16 Score=35.21 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=32.0
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR 319 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r 319 (430)
.+|||.=||+|+.+....+.|-+.+|+ |+++...+.+.+|
T Consensus 165 ~~vlDpf~Gsgtt~~aa~~~~r~~~g~--e~~~~y~~~~~~r 204 (227)
T PRK13699 165 AIVLDPFAGSGSTCVAALQSGRRYIGI--ELLEQYHRAGQQR 204 (227)
T ss_pred CEEEeCCCCCCHHHHHHHHcCCCEEEE--ecCHHHHHHHHHH
Confidence 357999999999999888889999998 5556666666554
No 336
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=65.70 E-value=61 Score=31.80 Aligned_cols=99 Identities=17% Similarity=0.120 Sum_probs=61.6
Q ss_pred ccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHH----HHHhc-----CCeeEEEcccc-c----CC---CCCCc
Q 043503 277 IRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNS----FIASR-----GLISMHISVSQ-R----LP---FFENT 338 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le----~a~~r-----g~i~~~~~d~~-~----lp---f~d~s 338 (430)
++.|+.+|||-=+-+.++... +.+++ ++|.-+ +++ ...+. ....++..|+. . +. |..+.
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~--EvD~P~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVF--EVDQPA-VLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEE--ECCChH-HHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 567899999999988888543 45555 446533 332 22221 22455555653 1 11 21222
Q ss_pred eeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 339 LDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 339 fDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
-=++++-.++ .+.+.+....+|..+.+...||+.++++..
T Consensus 159 ptl~i~EGvl-~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 159 PTAWLWEGLL-MYLTEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred Ceeeeecchh-hcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 3355554444 667777788999999999989999998754
No 337
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=65.52 E-value=33 Score=34.75 Aligned_cols=78 Identities=15% Similarity=0.117 Sum_probs=50.6
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcC---CEEEEEecCCChhHHHHHHhc-----CCeeEEEcccccCC---
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERN---VTIITTSLNLDGPFNSFIASR-----GLISMHISVSQRLP--- 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g---~~Vv~vdiD~s~~~le~a~~r-----g~i~~~~~d~~~lp--- 333 (430)
+++++..+......+.+|.--|.|..+.++.++. .+++++ |-++.+++.|+++ +.+.++++.+..+.
T Consensus 12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~--DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l 89 (314)
T COG0275 12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGI--DRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEAL 89 (314)
T ss_pred HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEE--cCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHH
Confidence 4444444433333567999999999999999983 568888 5556777777765 35777777654433
Q ss_pred --CCCCceeEEEE
Q 043503 334 --FFENTLDIVHS 344 (430)
Q Consensus 334 --f~d~sfDlV~~ 344 (430)
..-..+|-|+.
T Consensus 90 ~~~~i~~vDGiL~ 102 (314)
T COG0275 90 KELGIGKVDGILL 102 (314)
T ss_pred HhcCCCceeEEEE
Confidence 11235565555
No 338
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=64.81 E-value=43 Score=31.91 Aligned_cols=86 Identities=19% Similarity=0.152 Sum_probs=50.8
Q ss_pred EEEEcCCc-cHHHHHHHHc-CCE-EEEEecCCChhHHHHHHhcCC-eeEEEcccccCCCCCCceeEEEEccchhhcCCch
Q 043503 280 GLDIGGGT-GTFAARMRER-NVT-IITTSLNLDGPFNSFIASRGL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 280 VLDIGcGt-G~~a~~La~~-g~~-Vv~vdiD~s~~~le~a~~rg~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
+|=.|+|. |..+..+++. |.+ |+++ +.++...+.+++.|. -.+... .+.. ...+.+|+|+..-..
T Consensus 101 vlI~g~g~vg~~~i~~a~~~g~~~vi~~--~~~~~~~~~~~~~g~~~~~~~~-~~~~-~~~~~~d~vl~~~~~------- 169 (277)
T cd08255 101 VAVVGLGLVGLLAAQLAKAAGAREVVGV--DPDAARRELAEALGPADPVAAD-TADE-IGGRGADVVIEASGS------- 169 (277)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCcEEEE--CCCHHHHHHHHHcCCCcccccc-chhh-hcCCCCCEEEEccCC-------
Confidence 46667764 5566666665 877 7777 555666677776662 111111 0011 124568988863111
Q ss_pred hHHHHHHHHHHhccCCcEEEEee
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+.+..+.|+++|.++...
T Consensus 170 --~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 170 --PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred --hHHHHHHHHHhcCCcEEEEEe
Confidence 125678889999999987643
No 339
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=64.52 E-value=32 Score=36.27 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=51.2
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCch
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
++|+=+|+|. |...+.+++. |++|+.+|.| +.-.+.|..-|. ... +.+.. . ..+|+|+..-..
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d--~~R~~~A~~~G~-~~~--~~~e~-v--~~aDVVI~atG~------- 267 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVD--PICALQAAMEGY-EVM--TMEEA-V--KEGDIFVTTTGN------- 267 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC--hhhHHHHHhcCC-EEc--cHHHH-H--cCCCEEEECCCC-------
Confidence 4568899887 4444444443 8999888554 545666666665 211 11111 1 347999874221
Q ss_pred hHHHHHH-HHHHhccCCcEEEEeecc
Q 043503 356 MLEFTLY-DIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 356 ~l~~~L~-ei~RvLrPGG~lvl~~f~ 380 (430)
...+. +..+.+|+||.++.....
T Consensus 268 --~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 268 --KDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred --HHHHHHHHHhcCCCCcEEEEeCCC
Confidence 12344 458899999999776533
No 340
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=64.09 E-value=17 Score=37.09 Aligned_cols=92 Identities=18% Similarity=0.206 Sum_probs=57.6
Q ss_pred EEEEEcCCc-cHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc--CCeeEEEcccccCCCCCCceeEEEEccchhhcCCc
Q 043503 279 IGLDIGGGT-GTFAARMRER-NVTIITTSLNLDGPFNSFIASR--GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 279 ~VLDIGcGt-G~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r--g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d 354 (430)
.|.=||.|. |+.++.++-- |.+|+..|++ .+-+.....- +.+...-.....+.-.-...|+|+. .++..-..
T Consensus 170 kv~iiGGGvvgtnaAkiA~glgA~Vtild~n--~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIg-aVLIpgak- 245 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGLGADVTILDLN--IDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIG-AVLIPGAK- 245 (371)
T ss_pred cEEEECCccccchHHHHHhccCCeeEEEecC--HHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEE-EEEecCCC-
Confidence 346688886 7888888876 8888888554 3333333222 3345554443333322356899998 45533222
Q ss_pred hhHHHHHHHHHHhccCCcEEE
Q 043503 355 SMLEFTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lv 375 (430)
...-..+++...++||+.++
T Consensus 246 -aPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 246 -APKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred -CceehhHHHHHhcCCCcEEE
Confidence 25557889999999999875
No 341
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=63.68 E-value=56 Score=32.45 Aligned_cols=86 Identities=21% Similarity=0.237 Sum_probs=49.6
Q ss_pred EEEcCCc-cHHHHHHHHc-CCE-EEEEecCCChhHHHHHHhcCCeeEEEccccc-------C--CCCCCceeEEEEccch
Q 043503 281 LDIGGGT-GTFAARMRER-NVT-IITTSLNLDGPFNSFIASRGLISMHISVSQR-------L--PFFENTLDIVHSMHVL 348 (430)
Q Consensus 281 LDIGcGt-G~~a~~La~~-g~~-Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~-------l--pf~d~sfDlV~~~~~L 348 (430)
|-.|+|. |..+..+++. |.+ |+.+ ..++...+.+++.|.-.++...... + ......+|+|+.....
T Consensus 167 lI~g~g~vG~~a~~lak~~G~~~v~~~--~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~ 244 (343)
T cd05285 167 LVFGAGPIGLLTAAVAKAFGATKVVVT--DIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIECTGA 244 (343)
T ss_pred EEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEEECCCC
Confidence 4466654 6677777766 876 6666 4445555666554542332221111 1 1234569999873211
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
...+.++.+.|+++|.++..
T Consensus 245 ---------~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 245 ---------ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred ---------HHHHHHHHHHhhcCCEEEEE
Confidence 12577889999999998764
No 342
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=63.67 E-value=48 Score=32.72 Aligned_cols=89 Identities=18% Similarity=0.120 Sum_probs=50.8
Q ss_pred EEEEEcCC-ccHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccccC----C--CCCCceeEEEEccchh
Q 043503 279 IGLDIGGG-TGTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQRL----P--FFENTLDIVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIGcG-tG~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l----p--f~d~sfDlV~~~~~L~ 349 (430)
+||-.|+| .|..+..+++. |. .++++ +.++...+.+++.|...++......+ . ...+.+|+|+....-
T Consensus 170 ~VlI~g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~g~- 246 (347)
T cd05278 170 TVAVIGAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAVGF- 246 (347)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEccCC-
Confidence 34666665 36666667666 75 67766 44455556666555322222111111 0 133579998863111
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+.++.+.|+++|.++...
T Consensus 247 --------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 247 --------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred --------HHHHHHHHHHhhcCCEEEEEc
Confidence 136778889999999987643
No 343
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=62.54 E-value=75 Score=34.54 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=57.7
Q ss_pred CCccHHHHHHHH----cCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC----CCCCceeEEEEccchhhcCCchh
Q 043503 285 GGTGTFAARMRE----RNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP----FFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 285 cGtG~~a~~La~----~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp----f~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
||.|.++..+++ +|..++.+ |.+++..+.+++.| ...+.+|..+-. ..-+..|.|+.. .+++.
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvI--d~d~~~~~~~~~~g-~~~i~GD~~~~~~L~~a~i~~a~~viv~------~~~~~ 493 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVI--ETSRTRVDELRERG-IRAVLGNAANEEIMQLAHLDCARWLLLT------IPNGY 493 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEE--ECCHHHHHHHHHCC-CeEEEcCCCCHHHHHhcCccccCEEEEE------cCChH
Confidence 455555555554 48888888 45566677777665 477888876532 123467877652 22211
Q ss_pred HHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEE
Q 043503 357 LEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 357 l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
....+-...|...|.-.++... . .++-.+.+++.|-..+
T Consensus 494 ~~~~iv~~~~~~~~~~~iiar~---~----~~~~~~~l~~~Gad~v 532 (558)
T PRK10669 494 EAGEIVASAREKRPDIEIIARA---H----YDDEVAYITERGANQV 532 (558)
T ss_pred HHHHHHHHHHHHCCCCeEEEEE---C----CHHHHHHHHHcCCCEE
Confidence 2223444557778877766531 1 1233345677886644
No 344
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=61.52 E-value=4.8 Score=44.20 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=57.0
Q ss_pred EEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhcCCeeEEEcccc----cCC----CCCCceeEEEEc--
Q 043503 279 IGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASRGLISMHISVSQ----RLP----FFENTLDIVHSM-- 345 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~----~lp----f~d~sfDlV~~~-- 345 (430)
.|||+||-.|.|....++. |.-|+|+|+-+--++- +.+.+ +.|+. +.+ ...-..|+|+.-
T Consensus 47 ~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~------~c~t~-v~dIttd~cr~~l~k~l~t~~advVLhDga 119 (780)
T KOG1098|consen 47 VVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIP------NCDTL-VEDITTDECRSKLRKILKTWKADVVLHDGA 119 (780)
T ss_pred hheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCC------ccchh-hhhhhHHHHHHHHHHHHHhCCCcEEeecCC
Confidence 3699999999999988776 6678888664221110 00111 11100 000 111223666652
Q ss_pred -cchhhcCCc-----hhHHHHHHHHHHhccCCcEEEEeeccccC-cCcHHHHHHHHHH
Q 043503 346 -HVLSNWIPD-----SMLEFTLYDIYRLLRPGGIFWLDRFFCFG-SQLNETYVPMLDR 396 (430)
Q Consensus 346 -~~L~~~~~d-----~~l~~~L~ei~RvLrPGG~lvl~~f~~~~-~~~~~~~~~ll~~ 396 (430)
++-..|..+ +.....|.-....|+.||.|+-..|-... ..+...+.++|.+
T Consensus 120 pnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ll~v~~qLf~k 177 (780)
T KOG1098|consen 120 PNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNGLLRVFGQLFKK 177 (780)
T ss_pred CccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCcchHHHHHHHHHHHH
Confidence 333344432 23344666777889999996544333211 1133445555555
No 345
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=60.36 E-value=21 Score=34.94 Aligned_cols=70 Identities=17% Similarity=0.136 Sum_probs=39.0
Q ss_pred EEEEEcCCccHHHHHHH--HcCCEEEEEecCCChhHHHHHHh----c-CC---eeEEEc-cccc-CC---CCCCceeEEE
Q 043503 279 IGLDIGGGTGTFAARMR--ERNVTIITTSLNLDGPFNSFIAS----R-GL---ISMHIS-VSQR-LP---FFENTLDIVH 343 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La--~~g~~Vv~vdiD~s~~~le~a~~----r-g~---i~~~~~-d~~~-lp---f~d~sfDlV~ 343 (430)
++||||.|.--+=-.+- +.|.+.+|.|+| ...++.|+. + ++ +++... |-.. ++ -.++.||++.
T Consensus 81 ~~LDIGvGAnCIYPliG~~eYgwrfvGseid--~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tl 158 (292)
T COG3129 81 RILDIGVGANCIYPLIGVHEYGWRFVGSEID--SQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATL 158 (292)
T ss_pred EEEeeccCcccccccccceeecceeecCccC--HHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEe
Confidence 56999888764333232 237778888555 444444432 2 22 444432 2111 11 2267899999
Q ss_pred Eccchhh
Q 043503 344 SMHVLSN 350 (430)
Q Consensus 344 ~~~~L~~ 350 (430)
|+..++.
T Consensus 159 CNPPFh~ 165 (292)
T COG3129 159 CNPPFHD 165 (292)
T ss_pred cCCCcch
Confidence 9877743
No 346
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=60.08 E-value=74 Score=31.70 Aligned_cols=91 Identities=15% Similarity=0.082 Sum_probs=52.3
Q ss_pred EEEEEcCC-ccHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccccC-----C-CCCCceeEEEEccchh
Q 043503 279 IGLDIGGG-TGTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQRL-----P-FFENTLDIVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIGcG-tG~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l-----p-f~d~sfDlV~~~~~L~ 349 (430)
+||=.|+| .|..++.+++. |. .++++ +.++...+.+++-|.-.++...-..+ . .....+|+|+....-
T Consensus 169 ~vlI~g~g~iG~~~~~lak~~G~~~v~~~--~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~- 245 (351)
T cd08285 169 TVAVFGIGPVGLMAVAGARLRGAGRIIAV--GSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGGG- 245 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEE--eCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCCC-
Confidence 34666765 35566666665 77 46766 44455667777666522222111111 0 123468998863111
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
...+.++.+.|+++|.++.....
T Consensus 246 --------~~~~~~~~~~l~~~G~~v~~g~~ 268 (351)
T cd08285 246 --------QDTFEQALKVLKPGGTISNVNYY 268 (351)
T ss_pred --------HHHHHHHHHHhhcCCEEEEeccc
Confidence 23577889999999998865433
No 347
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=59.47 E-value=78 Score=31.38 Aligned_cols=88 Identities=10% Similarity=0.044 Sum_probs=53.4
Q ss_pred EEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHh-cCCeeEEEc----ccc-cC-CCCCCceeEEEEccch
Q 043503 279 IGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIAS-RGLISMHIS----VSQ-RL-PFFENTLDIVHSMHVL 348 (430)
Q Consensus 279 ~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~-rg~i~~~~~----d~~-~l-pf~d~sfDlV~~~~~L 348 (430)
+||=.|+ |.|.++..+++. |++|+++ ..++...+.+++ -|.-.++.. +.. .+ ....+.+|+|+..-.
T Consensus 154 ~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~--~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g- 230 (338)
T cd08295 154 TVFVSAASGAVGQLVGQLAKLKGCYVVGS--AGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG- 230 (338)
T ss_pred EEEEecCccHHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCC-
Confidence 3476664 677788888776 8988876 444555666665 454222221 110 00 011256899887311
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+.+..+.|+++|.++...
T Consensus 231 ---------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 231 ---------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred ---------HHHHHHHHHHhccCcEEEEec
Confidence 134678889999999998654
No 348
>PRK10458 DNA cytosine methylase; Provisional
Probab=59.16 E-value=1.1e+02 Score=32.89 Aligned_cols=122 Identities=11% Similarity=0.057 Sum_probs=64.1
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcC----CeeEEEcccccCCCC-----------------CC
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRG----LISMHISVSQRLPFF-----------------EN 337 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg----~i~~~~~d~~~lpf~-----------------d~ 337 (430)
+++|+=||.|.+...+-..|.+++.. .|++....+.-+.+- ....+..|...+... -.
T Consensus 90 ~~iDLFsGiGGl~lGfe~aG~~~v~a-~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~p 168 (467)
T PRK10458 90 RFIDLFAGIGGIRRGFEAIGGQCVFT-SEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHIP 168 (467)
T ss_pred eEEEeCcCccHHHHHHHHcCCEEEEE-EechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccCC
Confidence 45999999999999998888876543 355454443333331 123334455444311 12
Q ss_pred ceeEEEEccchhhcC----------------CchhHHHHHHHHHH---hccCCcEEEEee---ccc-cCcCcHHHHHHHH
Q 043503 338 TLDIVHSMHVLSNWI----------------PDSMLEFTLYDIYR---LLRPGGIFWLDR---FFC-FGSQLNETYVPML 394 (430)
Q Consensus 338 sfDlV~~~~~L~~~~----------------~d~~l~~~L~ei~R---vLrPGG~lvl~~---f~~-~~~~~~~~~~~ll 394 (430)
.+|+++....--.+. .++....++.++.| ..+|.- |++.. +.. ......+.+...+
T Consensus 169 ~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~-fvlENV~gl~s~~~g~~f~~i~~~L 247 (467)
T PRK10458 169 DHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPAI-FVLENVKNLKSHDKGKTFRIIMQTL 247 (467)
T ss_pred CCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCCE-EEEeCcHhhhcccccHHHHHHHHHH
Confidence 478888732210100 00112224444444 456663 33321 111 1122456788889
Q ss_pred HHcCCEEE
Q 043503 395 DRIGFKKL 402 (430)
Q Consensus 395 ~~~Gfk~l 402 (430)
++.||.+.
T Consensus 248 ~~lGY~v~ 255 (467)
T PRK10458 248 DELGYDVA 255 (467)
T ss_pred HHcCCeEE
Confidence 99999975
No 349
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=58.75 E-value=94 Score=27.45 Aligned_cols=93 Identities=9% Similarity=0.033 Sum_probs=53.4
Q ss_pred HHHHHHHcCCEEEEEecCCChh-HHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhc
Q 043503 290 FAARMRERNVTIITTSLNLDGP-FNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLL 368 (430)
Q Consensus 290 ~a~~La~~g~~Vv~vdiD~s~~-~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvL 368 (430)
++..+...|++|+....+..++ ..+.+.+. ..|+|..+..+.+... ....++..+.+..
T Consensus 23 v~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~------------------~~d~V~lS~~~~~~~~--~~~~~~~~L~~~~ 82 (137)
T PRK02261 23 LDRALTEAGFEVINLGVMTSQEEFIDAAIET------------------DADAILVSSLYGHGEI--DCRGLREKCIEAG 82 (137)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHc------------------CCCEEEEcCccccCHH--HHHHHHHHHHhcC
Confidence 4445555599998776676543 33444322 3466666555543222 2555666665553
Q ss_pred cCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEE
Q 043503 369 RPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 369 rPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
-++=.+++..-...++.......+.+++.||..+
T Consensus 83 ~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~v 116 (137)
T PRK02261 83 LGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRV 116 (137)
T ss_pred CCCCeEEEECCCCCCccChHHHHHHHHHcCCCEE
Confidence 4444455554443344556777788999998644
No 350
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=58.72 E-value=1.6e+02 Score=29.95 Aligned_cols=119 Identities=16% Similarity=0.245 Sum_probs=61.6
Q ss_pred CCccEEEEEcCCccH-HHHHHHHc-CCEEEEEecCCCh------------hHH----HHHHhcCC-eeE-EEcccccCCC
Q 043503 275 GTIRIGLDIGGGTGT-FAARMRER-NVTIITTSLNLDG------------PFN----SFIASRGL-ISM-HISVSQRLPF 334 (430)
Q Consensus 275 ~~ir~VLDIGcGtG~-~a~~La~~-g~~Vv~vdiD~s~------------~~l----e~a~~rg~-i~~-~~~d~~~lpf 334 (430)
...++++|.+.|.|. +...+.++ |++++.+..++++ ..+ +.+++.+. +-+ +-+|..++-+
T Consensus 111 ~~~kvvvD~~~G~~~~~~~~ll~~lg~~v~~~n~~~d~~F~~~~p~p~~~~~l~~l~~~v~~~~adlG~a~DgDgDRl~~ 190 (355)
T cd03084 111 KKFKVVVDSVNGVGGPIAPQLLEKLGAEVIPLNCEPDGNFGNINPDPGSETNLKQLLAVVKAEKADFGVAFDGDADRLIV 190 (355)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCcEEEEcCcCCCCCCCCCCCCCchhhHHHHHHHHHhcCCCEEEEEcCCCceeEE
Confidence 456889999999885 44445554 8888766322211 111 22222222 222 2345555543
Q ss_pred CCCceeEEEEccchhhcCCchhHHHHHHH-HHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEeccc
Q 043503 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYD-IYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMK 409 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~~d~~l~~~L~e-i~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~~k 409 (430)
-++. .++++.+.+..++.. +.+...++|.++.+-.. ...+.+++++.|.++.+..++.+
T Consensus 191 vd~~----------G~~l~~d~~~al~~~~l~~~~~~~~~vv~~v~s------s~~i~~ia~~~g~~v~~t~~G~~ 250 (355)
T cd03084 191 VDEN----------GGFLDGDELLALLAVELFLTFNPRGGVVKTVVS------SGALDKVAKKLGIKVIRTKTGFK 250 (355)
T ss_pred ECCC----------CceeCHhHHHHHHHHHHHHhcCCCCCEEEEccc------hHHHHHHHHHcCCcEEEecCcHH
Confidence 3332 122332223333332 22222467776664222 34577788889999888777754
No 351
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=58.66 E-value=74 Score=31.25 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=44.7
Q ss_pred eeEEEcccc-cCC-CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCC
Q 043503 322 ISMHISVSQ-RLP-FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGF 399 (430)
Q Consensus 322 i~~~~~d~~-~lp-f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gf 399 (430)
+.++.+++. .+| .+...+-+++.---+.. .....|..++..|.|||+++++++.. +.-.+.+.+.+++.|.
T Consensus 159 v~~vkG~F~dTLp~~p~~~IAll~lD~DlYe-----sT~~aLe~lyprl~~GGiIi~DDY~~--~gcr~AvdeF~~~~gi 231 (248)
T PF05711_consen 159 VRFVKGWFPDTLPDAPIERIALLHLDCDLYE-----STKDALEFLYPRLSPGGIIIFDDYGH--PGCRKAVDEFRAEHGI 231 (248)
T ss_dssp EEEEES-HHHHCCC-TT--EEEEEE---SHH-----HHHHHHHHHGGGEEEEEEEEESSTTT--HHHHHHHHHHHHHTT-
T ss_pred EEEECCcchhhhccCCCccEEEEEEeccchH-----HHHHHHHHHHhhcCCCeEEEEeCCCC--hHHHHHHHHHHHHcCC
Confidence 788888763 345 34456666665322211 25678999999999999999999876 2234556677777776
Q ss_pred EE
Q 043503 400 KK 401 (430)
Q Consensus 400 k~ 401 (430)
+.
T Consensus 232 ~~ 233 (248)
T PF05711_consen 232 TD 233 (248)
T ss_dssp -S
T ss_pred CC
Confidence 53
No 352
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=58.29 E-value=77 Score=31.31 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=51.9
Q ss_pred EEEEEcCCc-cHHHHHHHHc-CCE-EEEEecCCChhHHHHHHhcCCeeEEEcccc---cC-C-CCCCceeEEEEccchhh
Q 043503 279 IGLDIGGGT-GTFAARMRER-NVT-IITTSLNLDGPFNSFIASRGLISMHISVSQ---RL-P-FFENTLDIVHSMHVLSN 350 (430)
Q Consensus 279 ~VLDIGcGt-G~~a~~La~~-g~~-Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~---~l-p-f~d~sfDlV~~~~~L~~ 350 (430)
.||-.|+|. |.++..+++. |.+ ++++ +.++...+.+.+.|...++..... .+ . .....+|+|+...
T Consensus 162 ~vlI~g~g~~g~~~~~lA~~~G~~~v~~~--~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~---- 235 (343)
T cd08236 162 TVVVIGAGTIGLLAIQWLKILGAKRVIAV--DIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAA---- 235 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEECC----
Confidence 347777655 6666667665 876 7666 444555666655554222222111 10 1 1234589998731
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.. ...+..+.+.|+++|.++...
T Consensus 236 --g~---~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 236 --GS---PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred --CC---HHHHHHHHHHhhcCCEEEEEc
Confidence 11 235678899999999987654
No 353
>PLN02740 Alcohol dehydrogenase-like
Probab=56.71 E-value=81 Score=32.16 Aligned_cols=91 Identities=14% Similarity=0.061 Sum_probs=52.7
Q ss_pred EEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEccc------ccC-CCCCCceeEEEEccch
Q 043503 279 IGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVS------QRL-PFFENTLDIVHSMHVL 348 (430)
Q Consensus 279 ~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~------~~l-pf~d~sfDlV~~~~~L 348 (430)
+||=+|+|. |.+++.+++. |+ +|+++ +.++..++.+++-|.-.++.... +.+ ....+.+|+|+-.-.-
T Consensus 201 ~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G~ 278 (381)
T PLN02740 201 SVAIFGLGAVGLAVAEGARARGASKIIGV--DINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAGN 278 (381)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcEEEE--cCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCC
Confidence 456677643 4455556655 77 58877 55566778887766533332111 001 0112368999873221
Q ss_pred hhcCCchhHHHHHHHHHHhccCC-cEEEEeecc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPG-GIFWLDRFF 380 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPG-G~lvl~~f~ 380 (430)
...+.+..+.+++| |.+++....
T Consensus 279 ---------~~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 279 ---------VEVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred ---------hHHHHHHHHhhhcCCCEEEEEccC
Confidence 13566777889997 988876544
No 354
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=56.66 E-value=89 Score=34.67 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=53.2
Q ss_pred EEEEEcCCccHHHHHHH----HcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC----CCCCceeEEEEccchhh
Q 043503 279 IGLDIGGGTGTFAARMR----ERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP----FFENTLDIVHSMHVLSN 350 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La----~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp----f~d~sfDlV~~~~~L~~ 350 (430)
.|+=+|+ |.++..++ ++|..++.+ |.++...+.+++.|. .++.+|..+.. ..-+..|+|++.
T Consensus 402 ~vII~G~--Gr~G~~va~~L~~~g~~vvvI--D~d~~~v~~~~~~g~-~v~~GDat~~~~L~~agi~~A~~vvv~----- 471 (621)
T PRK03562 402 RVIIAGF--GRFGQIVGRLLLSSGVKMTVL--DHDPDHIETLRKFGM-KVFYGDATRMDLLESAGAAKAEVLINA----- 471 (621)
T ss_pred cEEEEec--ChHHHHHHHHHHhCCCCEEEE--ECCHHHHHHHHhcCC-eEEEEeCCCHHHHHhcCCCcCCEEEEE-----
Confidence 3455554 44444444 347888887 555666777776664 67888876643 123467888873
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
.+++.....+-...|-+.|.-.++.
T Consensus 472 -~~d~~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 472 -IDDPQTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred -eCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 2332344556667777788876655
No 355
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=56.39 E-value=48 Score=31.66 Aligned_cols=97 Identities=10% Similarity=0.079 Sum_probs=56.0
Q ss_pred cEEEEEcCCccHHHHHHHHc----C--CEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC-------CCCCceeEEEE
Q 043503 278 RIGLDIGGGTGTFAARMRER----N--VTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP-------FFENTLDIVHS 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~----g--~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp-------f~d~sfDlV~~ 344 (430)
+.|+++|.-.|.-+...|.. | ++|+++|+|+.+ ....|.+...+.|+.++..... ..++.--+.+|
T Consensus 71 ~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~-~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfvi 149 (237)
T COG3510 71 SLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKP-LDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFVI 149 (237)
T ss_pred ceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCc-CChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEEE
Confidence 45699998777555544443 6 899999988754 1222333344778887654322 11111123333
Q ss_pred ccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 345 MHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 345 ~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
-..- |... .....|+-.++.|..|-++++.+
T Consensus 150 lDsd-Hs~~--hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 150 LDSD-HSME--HVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred ecCC-chHH--HHHHHHHHhhhHhhcCceEEEec
Confidence 2222 2121 24456777889999999998754
No 356
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=56.06 E-value=98 Score=30.99 Aligned_cols=92 Identities=12% Similarity=0.129 Sum_probs=52.7
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEc-c--cccC----C--CCCCcee----EE
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHIS-V--SQRL----P--FFENTLD----IV 342 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~-d--~~~l----p--f~d~sfD----lV 342 (430)
.+||=+|+|. |..+..+++. |.+|+++ +.++..++.+++.|.-.++.. + .+.+ . .....+| +|
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G~~vi~~--~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v 245 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMGAAVVAI--DIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKI 245 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEE--cCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEE
Confidence 4558888755 5666666665 8888877 556667777777665222211 0 0010 0 0112344 55
Q ss_pred EEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 343 HSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 343 ~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
+-.-. -...+....++|++||.+++..+.
T Consensus 246 ~d~~g---------~~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 246 FECSG---------SKPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred EECCC---------ChHHHHHHHHHHhcCCeEEEECcC
Confidence 53211 123566778899999999886654
No 357
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=55.53 E-value=85 Score=31.12 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=49.3
Q ss_pred EEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccccCC-----CCCCceeEEEEccchhhc
Q 043503 280 GLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQRLP-----FFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 280 VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp-----f~d~sfDlV~~~~~L~~~ 351 (430)
||-.|+|. |..++.+++. |. +|+++ +-++.-.+.+.+.|...++......+. ...+.+|+|+..-.-
T Consensus 167 vlV~g~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g~--- 241 (341)
T cd05281 167 VLITGCGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSGN--- 241 (341)
T ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCCC---
Confidence 34466543 5566666665 77 57666 445555555555554222211111110 123568999873211
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+.++.+.|+++|.++...
T Consensus 242 ------~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 242 ------PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred ------HHHHHHHHHHhccCCEEEEEc
Confidence 124667889999999987643
No 358
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=55.35 E-value=29 Score=36.01 Aligned_cols=92 Identities=16% Similarity=0.175 Sum_probs=62.0
Q ss_pred ccEEEEEcCCccHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhc-----CC-eeEEEcccccCCCC-CCceeEEEEccc
Q 043503 277 IRIGLDIGGGTGTFAARMRER-NV-TIITTSLNLDGPFNSFIASR-----GL-ISMHISVSQRLPFF-ENTLDIVHSMHV 347 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~r-----g~-i~~~~~d~~~lpf~-d~sfDlV~~~~~ 347 (430)
..+|+|.=+|||.=+++.+.. +. +|+.- |+++...+.++++ +. ...+..|+..+-.. ...||+|=. ..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lN--Disp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi-DP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLN--DISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI-DP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEc--cCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec-CC
Confidence 466799999999999988876 44 66666 6667767666654 21 34444565443321 367888765 22
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+ +...-++....+.+|.||++-++
T Consensus 130 F------GSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 130 F------GSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred C------CCCchHHHHHHHHhhcCCEEEEE
Confidence 2 22456888999999999999764
No 359
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=55.29 E-value=25 Score=36.74 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=25.7
Q ss_pred CCccEEEEEcCCccHHHHHHHHc-CCEEEEEe
Q 043503 275 GTIRIGLDIGGGTGTFAARMRER-NVTIITTS 305 (430)
Q Consensus 275 ~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vd 305 (430)
..+..|+|+|.|.|.++..|.-. |..|+++|
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIe 183 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIE 183 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEec
Confidence 34566799999999999999876 88888884
No 360
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=54.20 E-value=9.2 Score=38.64 Aligned_cols=106 Identities=17% Similarity=0.169 Sum_probs=60.6
Q ss_pred ceeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHH-HHHHcC-CEEEEEecCCChhHHHHH----HhcCC---ee
Q 043503 253 RWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAA-RMRERN-VTIITTSLNLDGPFNSFI----ASRGL---IS 323 (430)
Q Consensus 253 ~~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~-~La~~g-~~Vv~vdiD~s~~~le~a----~~rg~---i~ 323 (430)
.-||..+.... ..+++.....+ .+|.|+=.|-|+|+. .+...| .+|.+++.+ +..++.. ..++. ..
T Consensus 174 ~~MFS~GN~~E-K~Rv~~~sc~~--eviVDLYAGIGYFTlpflV~agAk~V~A~EwN--p~svEaLrR~~~~N~V~~r~~ 248 (351)
T KOG1227|consen 174 KTMFSRGNIKE-KKRVLNTSCDG--EVIVDLYAGIGYFTLPFLVTAGAKTVFACEWN--PWSVEALRRNAEANNVMDRCR 248 (351)
T ss_pred hhhhhcCcHHH-HHHhhhccccc--chhhhhhcccceEEeehhhccCccEEEEEecC--HHHHHHHHHHHHhcchHHHHH
Confidence 33555554443 34555544444 347999999999998 555555 478888554 4444332 23333 23
Q ss_pred EEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCC
Q 043503 324 MHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPG 371 (430)
Q Consensus 324 ~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPG 371 (430)
++.+|. +.+-++...|-|... ++|. -++-..-+..+|||.
T Consensus 249 i~~gd~-R~~~~~~~AdrVnLG-----LlPS--se~~W~~A~k~Lk~e 288 (351)
T KOG1227|consen 249 ITEGDN-RNPKPRLRADRVNLG-----LLPS--SEQGWPTAIKALKPE 288 (351)
T ss_pred hhhccc-cccCccccchheeec-----cccc--cccchHHHHHHhhhc
Confidence 334444 345567777877762 2333 233455677889884
No 361
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=53.38 E-value=1.1e+02 Score=30.20 Aligned_cols=110 Identities=20% Similarity=0.238 Sum_probs=57.6
Q ss_pred EcCCc--cHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHH
Q 043503 283 IGGGT--GTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFT 360 (430)
Q Consensus 283 IGcGt--G~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~ 360 (430)
||+|. ..++..+++.|.+|+.. |.++...+.+.+.|.. . ..+.+.+.-.....|+|+.. + .++...+.+
T Consensus 6 IGlG~mG~~mA~~L~~~g~~v~v~--dr~~~~~~~~~~~g~~-~-~~s~~~~~~~~~~advVi~~--v---p~~~~~~~v 76 (299)
T PRK12490 6 IGLGKMGGNMAERLREDGHEVVGY--DVNQEAVDVAGKLGIT-A-RHSLEELVSKLEAPRTIWVM--V---PAGEVTESV 76 (299)
T ss_pred EcccHHHHHHHHHHHhCCCEEEEE--ECCHHHHHHHHHCCCe-e-cCCHHHHHHhCCCCCEEEEE--e---cCchHHHHH
Confidence 56554 34666666668888877 5555555555554531 1 11222211001125777763 1 122245667
Q ss_pred HHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 361 LYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 361 L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
+.++...+++|..+ ++. ....+.....+.+.+.+.|...+.
T Consensus 77 ~~~i~~~l~~g~iv-id~-st~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 77 IKDLYPLLSPGDIV-VDG-GNSRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred HHHHhccCCCCCEE-EEC-CCCCchhHHHHHHHHHHcCCeEEe
Confidence 77777778887644 431 112233345566677778876555
No 362
>PLN02827 Alcohol dehydrogenase-like
Probab=53.37 E-value=81 Score=32.22 Aligned_cols=90 Identities=13% Similarity=0.004 Sum_probs=51.3
Q ss_pred EEEEEcCCc-cHHHHHHHHc-CCE-EEEEecCCChhHHHHHHhcCCeeEEEcc-----ccc-CC-CCCCceeEEEEccch
Q 043503 279 IGLDIGGGT-GTFAARMRER-NVT-IITTSLNLDGPFNSFIASRGLISMHISV-----SQR-LP-FFENTLDIVHSMHVL 348 (430)
Q Consensus 279 ~VLDIGcGt-G~~a~~La~~-g~~-Vv~vdiD~s~~~le~a~~rg~i~~~~~d-----~~~-lp-f~d~sfDlV~~~~~L 348 (430)
+||=.|+|. |.+++.+++. |++ |+++ +.++...+.+++-|.-.++... ... +. ...+.+|+|+-.-.-
T Consensus 196 ~VlV~G~G~vG~~~iqlak~~G~~~vi~~--~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~ 273 (378)
T PLN02827 196 SVVIFGLGTVGLSVAQGAKLRGASQIIGV--DINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVGD 273 (378)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEE--CCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECCCC
Confidence 447677643 4555555554 874 6666 5566777888777753222111 000 00 112368988873211
Q ss_pred hhcCCchhHHHHHHHHHHhccCC-cEEEEeec
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPG-GIFWLDRF 379 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPG-G~lvl~~f 379 (430)
...+.+..+.+++| |.+++...
T Consensus 274 ---------~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 274 ---------TGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred ---------hHHHHHHHHhhccCCCEEEEECC
Confidence 12466788889999 99987543
No 363
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=53.30 E-value=46 Score=35.61 Aligned_cols=101 Identities=18% Similarity=0.082 Sum_probs=58.5
Q ss_pred CccEEEEEcCCcc--HHHHHHHHcC-C-EEEEEecCCChhHHHHHHhc--C-----CeeEE--EcccccCCCC-CCceeE
Q 043503 276 TIRIGLDIGGGTG--TFAARMRERN-V-TIITTSLNLDGPFNSFIASR--G-----LISMH--ISVSQRLPFF-ENTLDI 341 (430)
Q Consensus 276 ~ir~VLDIGcGtG--~~a~~La~~g-~-~Vv~vdiD~s~~~le~a~~r--g-----~i~~~--~~d~~~lpf~-d~sfDl 341 (430)
..+.++|+|.|.| .+++...-++ . .++.| |.+.+|....... + .+.+. +.--+.+|.. .+.||+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~V--drs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDl 277 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLV--DRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDL 277 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEee--ccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceee
Confidence 3345678877665 5666666553 3 33444 8888887665432 2 21111 1122445543 456999
Q ss_pred EEEccchhhcCCchhHHHHHHH-HHHhccCCcEEEEee
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYD-IYRLLRPGGIFWLDR 378 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~e-i~RvLrPGG~lvl~~ 378 (430)
|+|.+.+.+........+...+ +.+..++||.+++.+
T Consensus 278 vi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe 315 (491)
T KOG2539|consen 278 VICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIE 315 (491)
T ss_pred EEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEe
Confidence 9999999765433333333333 556678899988854
No 364
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=51.94 E-value=55 Score=32.59 Aligned_cols=87 Identities=16% Similarity=0.118 Sum_probs=54.9
Q ss_pred EEEEcCCc--cHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhH
Q 043503 280 GLDIGGGT--GTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSML 357 (430)
Q Consensus 280 VLDIGcGt--G~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l 357 (430)
|+=+|.|- |.++..+.++|..+..++.|.+...++.+.+.|.+.=...+... -.....|+|+.+-.. ...
T Consensus 6 v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~--~~~~~aD~VivavPi------~~~ 77 (279)
T COG0287 6 VGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLA--EAAAEADLVIVAVPI------EAT 77 (279)
T ss_pred EEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhh--hhcccCCEEEEeccH------HHH
Confidence 35555553 57888888888777666668777777777777764322222101 113457998885333 236
Q ss_pred HHHHHHHHHhccCCcEE
Q 043503 358 EFTLYDIYRLLRPGGIF 374 (430)
Q Consensus 358 ~~~L~ei~RvLrPGG~l 374 (430)
..++.++..-|+||-.+
T Consensus 78 ~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 78 EEVLKELAPHLKKGAIV 94 (279)
T ss_pred HHHHHHhcccCCCCCEE
Confidence 77888888888888643
No 365
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=51.31 E-value=1.4e+02 Score=29.80 Aligned_cols=88 Identities=14% Similarity=0.093 Sum_probs=51.9
Q ss_pred EEEEcCCc--cHHHHHHHHcCCEEEEEecCCChhHHHHHHhc-CCeeEEE-cccccC------CCCCCceeEEEEccchh
Q 043503 280 GLDIGGGT--GTFAARMRERNVTIITTSLNLDGPFNSFIASR-GLISMHI-SVSQRL------PFFENTLDIVHSMHVLS 349 (430)
Q Consensus 280 VLDIGcGt--G~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r-g~i~~~~-~d~~~l------pf~d~sfDlV~~~~~L~ 349 (430)
|+=+|+|. |.++.+|++.|..|+.+ +-+++.++..+++ |+ .+.. +..... +-....||+|+..
T Consensus 5 I~IiGaGaiG~~~a~~L~~~G~~V~lv--~r~~~~~~~i~~~~Gl-~i~~~g~~~~~~~~~~~~~~~~~~D~viv~---- 77 (305)
T PRK05708 5 WHILGAGSLGSLWACRLARAGLPVRLI--LRDRQRLAAYQQAGGL-TLVEQGQASLYAIPAETADAAEPIHRLLLA---- 77 (305)
T ss_pred EEEECCCHHHHHHHHHHHhCCCCeEEE--EechHHHHHHhhcCCe-EEeeCCcceeeccCCCCcccccccCEEEEE----
Confidence 47788775 45788888878888777 4444445555443 44 2211 111111 1123479998873
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
...-.....+..+...+.++..++.
T Consensus 78 --vK~~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 78 --CKAYDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred --CCHHhHHHHHHHHHhhCCCCCEEEE
Confidence 1111266788899999999887655
No 366
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=51.30 E-value=1.3e+02 Score=29.81 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=50.3
Q ss_pred EEEcCC-ccHHHHHHHHc-CCE-EEEEecCCChhHHHHHHhcCCeeEEEccccc----C--CCCCCceeEEEEccchhhc
Q 043503 281 LDIGGG-TGTFAARMRER-NVT-IITTSLNLDGPFNSFIASRGLISMHISVSQR----L--PFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 281 LDIGcG-tG~~a~~La~~-g~~-Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~----l--pf~d~sfDlV~~~~~L~~~ 351 (430)
|-.|+| .|..++.+++. |.+ |+++ +-++...+.+++.|.-.++...... + ....+.+|+|+....-
T Consensus 166 lI~~~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~g~--- 240 (340)
T TIGR00692 166 LVTGAGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMSGA--- 240 (340)
T ss_pred EEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECCCC---
Confidence 445654 45566666665 876 6666 5556556666665642222111111 1 0134568999874111
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
...+.++.+.|+++|.++....
T Consensus 241 ------~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 241 ------PKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred ------HHHHHHHHHhhcCCCEEEEEcc
Confidence 2357788999999999877543
No 367
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=50.90 E-value=1.2e+02 Score=29.85 Aligned_cols=109 Identities=14% Similarity=0.165 Sum_probs=56.8
Q ss_pred EEEcCCc-c-HHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHH
Q 043503 281 LDIGGGT-G-TFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLE 358 (430)
Q Consensus 281 LDIGcGt-G-~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~ 358 (430)
-=||+|. | .++..+++.|.+|++. |.++...+.+.+.|.. ...+...+. ...|+|+..-.- .....
T Consensus 6 gviG~G~mG~~~a~~l~~~g~~v~~~--d~~~~~~~~~~~~g~~--~~~~~~e~~---~~~d~vi~~vp~-----~~~~~ 73 (296)
T PRK11559 6 GFIGLGIMGKPMSKNLLKAGYSLVVY--DRNPEAVAEVIAAGAE--TASTAKAVA---EQCDVIITMLPN-----SPHVK 73 (296)
T ss_pred EEEccCHHHHHHHHHHHHCCCeEEEE--cCCHHHHHHHHHCCCe--ecCCHHHHH---hcCCEEEEeCCC-----HHHHH
Confidence 4567776 3 5777777778888887 5555555555544431 111222211 346998884221 11133
Q ss_pred HHH---HHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 359 FTL---YDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 359 ~~L---~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
..+ ..+...+++|-.++ +. ....+...+.+.+.+...|...+.
T Consensus 74 ~v~~~~~~~~~~~~~g~iii-d~-st~~~~~~~~l~~~~~~~g~~~~d 119 (296)
T PRK11559 74 EVALGENGIIEGAKPGTVVI-DM-SSIAPLASREIAAALKAKGIEMLD 119 (296)
T ss_pred HHHcCcchHhhcCCCCcEEE-EC-CCCCHHHHHHHHHHHHHcCCcEEE
Confidence 333 33556677765554 21 111222334566667777766443
No 368
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=50.87 E-value=1.3e+02 Score=31.24 Aligned_cols=84 Identities=10% Similarity=-0.018 Sum_probs=46.2
Q ss_pred cEEEEEcCCccHHHHHHHH----cCCEEEEEecCCChhHHHHHHhcC-CeeEEEcccccCC----CCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRE----RNVTIITTSLNLDGPFNSFIASRG-LISMHISVSQRLP----FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~----~g~~Vv~vdiD~s~~~le~a~~rg-~i~~~~~d~~~lp----f~d~sfDlV~~~~~L 348 (430)
++++=+|+ |.++..+++ .|..|+.+ |.++...+...+++ .+.++.+|..+.. ..-..+|+|++..
T Consensus 232 ~~iiIiG~--G~~g~~l~~~L~~~~~~v~vi--d~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~-- 305 (453)
T PRK09496 232 KRVMIVGG--GNIGYYLAKLLEKEGYSVKLI--ERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALT-- 305 (453)
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCeEEEE--ECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECC--
Confidence 44566666 555554443 48888888 44455566655553 3567777764322 1234688887731
Q ss_pred hhcCCchhHHHHHHHHHHhccCC
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPG 371 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPG 371 (430)
++.........+.+.+.+.
T Consensus 306 ----~~~~~n~~~~~~~~~~~~~ 324 (453)
T PRK09496 306 ----NDDEANILSSLLAKRLGAK 324 (453)
T ss_pred ----CCcHHHHHHHHHHHHhCCC
Confidence 1212333444455666554
No 369
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=50.52 E-value=61 Score=28.14 Aligned_cols=87 Identities=21% Similarity=0.206 Sum_probs=51.3
Q ss_pred EEEcCCc-c-HHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcc-------cccC---CCCCCceeEEEEccch
Q 043503 281 LDIGGGT-G-TFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISV-------SQRL---PFFENTLDIVHSMHVL 348 (430)
Q Consensus 281 LDIGcGt-G-~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d-------~~~l---pf~d~sfDlV~~~~~L 348 (430)
+=+|+|. | .++..|++.|.+|..+ .-.. ..+..+++|. .+...+ .... +.....+|+|+..
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g~~V~l~--~r~~-~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~--- 74 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAGHDVTLV--SRSP-RLEAIKEQGL-TITGPDGDETVQPPIVISAPSADAGPYDLVIVA--- 74 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTTCEEEEE--ESHH-HHHHHHHHCE-EEEETTEEEEEEEEEEESSHGHHHSTESEEEE----
T ss_pred EEECcCHHHHHHHHHHHHCCCceEEE--Eccc-cHHhhhheeE-EEEecccceecccccccCcchhccCCCcEEEEE---
Confidence 4466665 3 4666666778988877 3333 4454555554 111111 0011 1235689999884
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.........+..+.+.+.|+..+++.
T Consensus 75 ---vKa~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 75 ---VKAYQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp ---SSGGGHHHHHHHHCTGEETTEEEEEE
T ss_pred ---ecccchHHHHHHHhhccCCCcEEEEE
Confidence 11123678999999999999887763
No 370
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=50.47 E-value=2.6e+02 Score=27.55 Aligned_cols=111 Identities=11% Similarity=0.123 Sum_probs=55.1
Q ss_pred HHHHHcCCEEEEEecCCC-h----hHHHHHHhcCCeeEEEcccccCC----------CCCCceeEEEEccchhhcCCchh
Q 043503 292 ARMRERNVTIITTSLNLD-G----PFNSFIASRGLISMHISVSQRLP----------FFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 292 ~~La~~g~~Vv~vdiD~s-~----~~le~a~~rg~i~~~~~d~~~lp----------f~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
..+++.|.+|..+|.|.- . .+...+...| ++++......-| ...+.||+|+.-..-.. ..+..
T Consensus 94 ~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~-i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ViIDT~G~~-~~d~~ 171 (272)
T TIGR00064 94 NKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLG-VDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRL-QNKVN 171 (272)
T ss_pred HHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCC-eEEEeCCCCCCHHHHHHHHHHHHHHCCCCEEEEeCCCCC-cchHH
Confidence 334444778877777742 1 1222344445 444432111111 01356998887433222 22333
Q ss_pred HHHHHHHHHHhcc------CCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 357 LEFTLYDIYRLLR------PGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 357 l~~~L~ei~RvLr------PGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+-.-|.++.++.. |.+.+++.+... +.+.........+..++.-+-++
T Consensus 172 ~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~-~~~~~~~~~~f~~~~~~~g~IlT 225 (272)
T TIGR00064 172 LMDELKKIKRVIKKVDKDAPDEVLLVLDATT-GQNALEQAKVFNEAVGLTGIILT 225 (272)
T ss_pred HHHHHHHHHHHHhcccCCCCceEEEEEECCC-CHHHHHHHHHHHhhCCCCEEEEE
Confidence 4556777777777 888887765442 22222334444445665544433
No 371
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=49.99 E-value=26 Score=35.18 Aligned_cols=60 Identities=15% Similarity=0.459 Sum_probs=41.8
Q ss_pred CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee--ccc-cCc-C---cHHHHHHHHHHcCCEEE
Q 043503 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR--FFC-FGS-Q---LNETYVPMLDRIGFKKL 402 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~--f~~-~~~-~---~~~~~~~ll~~~Gfk~l 402 (430)
..+-||+|+.+....|...+ ++.++++|||.+++.. |+- ... + ....+.+++..+||+..
T Consensus 219 y~~~Fd~ifvs~s~vh~L~p--------~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 219 YQNFFDLIFVSCSMVHFLKP--------ELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred hcCCCCEEEEhhhhHhhcch--------HHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 35789999997666565543 4778999999999865 221 111 1 23558889999999865
No 372
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=49.90 E-value=88 Score=31.14 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=50.9
Q ss_pred EEEEcC-CccHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEccccc----C-C-CCCCceeEEEEccchhh
Q 043503 280 GLDIGG-GTGTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQR----L-P-FFENTLDIVHSMHVLSN 350 (430)
Q Consensus 280 VLDIGc-GtG~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~----l-p-f~d~sfDlV~~~~~L~~ 350 (430)
||=.|+ +.|.++..+++. |. +|+.+ +.++...+.+.+.|.-.++...... + . ...+.+|+|+-....
T Consensus 176 vlI~g~g~vG~~a~q~a~~~G~~~v~~~--~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~-- 251 (351)
T cd08233 176 ALVLGAGPIGLLTILALKAAGASKIIVS--EPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGV-- 251 (351)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCC--
Confidence 344554 345566666665 87 67776 5556666666655542222111111 1 0 123458999873211
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
...+.++.+.|++||.++.....
T Consensus 252 -------~~~~~~~~~~l~~~G~~v~~g~~ 274 (351)
T cd08233 252 -------QATLDTAIDALRPRGTAVNVAIW 274 (351)
T ss_pred -------HHHHHHHHHhccCCCEEEEEccC
Confidence 13567888999999998875543
No 373
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=49.89 E-value=96 Score=31.42 Aligned_cols=91 Identities=16% Similarity=0.109 Sum_probs=48.7
Q ss_pred EEEEEcCC-ccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEc-ccccCCCCCCceeEEEEccchhhcCCch
Q 043503 279 IGLDIGGG-TGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHIS-VSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 279 ~VLDIGcG-tG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~-d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
+||=.|+| .|.++..+++. |.+|+.++.+. +...+.+++.|.-.++.. +...+.-..+.+|+|+-.-. .
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~-~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g------~- 257 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS-NKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS------A- 257 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc-chhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC------C-
Confidence 34557764 35566666665 88887764332 222334445554222211 10111100124888886321 1
Q ss_pred hHHHHHHHHHHhccCCcEEEEeec
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
...+.+..+.|++||.++....
T Consensus 258 --~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 258 --VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred --HHHHHHHHHHhcCCcEEEEeCC
Confidence 1356778899999999987543
No 374
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=49.66 E-value=88 Score=31.30 Aligned_cols=88 Identities=17% Similarity=0.072 Sum_probs=49.1
Q ss_pred EEEEcCC-ccHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccccCC---------CCCCceeEEEEccc
Q 043503 280 GLDIGGG-TGTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQRLP---------FFENTLDIVHSMHV 347 (430)
Q Consensus 280 VLDIGcG-tG~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp---------f~d~sfDlV~~~~~ 347 (430)
||=.|+| .|..+..+++. |. +|+++ +.++...+.+++-|.-.++.......+ ...+.+|+|+....
T Consensus 181 vlI~g~g~vG~~~~~lak~~G~~~v~~~--~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g 258 (361)
T cd08231 181 VVVQGAGPLGLYAVAAAKLAGARRVIVI--DGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEASG 258 (361)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEECCC
Confidence 3545543 34455555555 88 88877 445555566665565222221111100 12346899986311
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
- ...+.+..+.|+++|.++...
T Consensus 259 ~---------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 259 H---------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred C---------hHHHHHHHHHhccCCEEEEEc
Confidence 1 124667889999999998654
No 375
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=49.39 E-value=55 Score=32.75 Aligned_cols=64 Identities=14% Similarity=0.267 Sum_probs=51.0
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEc
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSM 345 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~ 345 (430)
...|+|.-.|.++-.+.+++..|+++|- .+|.+.....|.+.....|..++.-.....|-.+|-
T Consensus 214 ~avDLGAcPGGWTyqLVkr~m~V~aVDn---g~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCD 277 (358)
T COG2933 214 WAVDLGACPGGWTYQLVKRNMRVYAVDN---GPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCD 277 (358)
T ss_pred eeeecccCCCccchhhhhcceEEEEecc---chhhhhhhcccceeeeeccCcccccCCCCCceEEee
Confidence 3599999999999999999999999853 566666677788888887766654335678999993
No 376
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=49.33 E-value=1.5e+02 Score=30.96 Aligned_cols=107 Identities=13% Similarity=0.106 Sum_probs=61.1
Q ss_pred hHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCCh-hHHHHHHhcCCe--eEEEcccccCCCCCCc
Q 043503 262 DYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDG-PFNSFIASRGLI--SMHISVSQRLPFFENT 338 (430)
Q Consensus 262 ~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~-~~le~a~~rg~i--~~~~~d~~~lpf~d~s 338 (430)
.|.++.+......+ .||=++-..|.++..++..+.+.+ .|-=.+. ...+.++.+|.. .+...+... ++ .+.
T Consensus 33 e~ll~~~~~~~~~~---~~~i~nd~fGal~~~l~~~~~~~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~~-~~-~~~ 106 (378)
T PRK15001 33 EYLLQQLDDTEIRG---PVLILNDAFGALSCALAEHKPYSI-GDSYISELATRENLRLNGIDESSVKFLDSTA-DY-PQQ 106 (378)
T ss_pred HHHHHHHhhcccCC---CEEEEcCchhHHHHHHHhCCCCee-ehHHHHHHHHHHHHHHcCCCcccceeecccc-cc-cCC
Confidence 44555554432222 349999999999999997666433 2111111 223445555551 111222211 12 245
Q ss_pred eeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 339 LDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 339 fDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+|+|+....= ....++..+..+.++|.||+.++...
T Consensus 107 ~d~vl~~~PK----~~~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 107 PGVVLIKVPK----TLALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred CCEEEEEeCC----CHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 8999883221 11347778999999999999987653
No 377
>PRK10867 signal recognition particle protein; Provisional
Probab=49.20 E-value=2e+02 Score=30.63 Aligned_cols=43 Identities=26% Similarity=0.152 Sum_probs=29.3
Q ss_pred CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 336 ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 336 d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
...||+|+.--.-.... ++.+-..+..+.++.+|.+.+++.+-
T Consensus 181 ~~~~DvVIIDTaGrl~~-d~~lm~eL~~i~~~v~p~evllVlda 223 (433)
T PRK10867 181 ENGYDVVIVDTAGRLHI-DEELMDELKAIKAAVNPDEILLVVDA 223 (433)
T ss_pred hcCCCEEEEeCCCCccc-CHHHHHHHHHHHHhhCCCeEEEEEec
Confidence 35699998844432323 33456778888999999998877653
No 378
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=48.99 E-value=1.4e+02 Score=28.41 Aligned_cols=89 Identities=16% Similarity=0.050 Sum_probs=51.2
Q ss_pred cEEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccch
Q 043503 278 RIGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L 348 (430)
..||-.|| +.|..++.++.. |++|+.+ +.+....+.+.+.|.-.++......+. .....+|+++....-
T Consensus 141 ~~vli~g~~~~~g~~~~~~a~~~g~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~g~ 218 (323)
T cd08241 141 ETVLVLGAAGGVGLAAVQLAKALGARVIAA--ASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDPVGG 218 (323)
T ss_pred CEEEEEcCCchHHHHHHHHHHHhCCEEEEE--eCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEECccH
Confidence 45688887 355566666655 8888877 444555666665554222222111110 123468998873211
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
..+..+.+.++++|.++...
T Consensus 219 ----------~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 219 ----------DVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred ----------HHHHHHHHhhccCCEEEEEc
Confidence 23456778899999987644
No 379
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=48.76 E-value=1.2e+02 Score=30.60 Aligned_cols=88 Identities=15% Similarity=0.023 Sum_probs=50.6
Q ss_pred EEEEEcCC-ccHHHHHHHHc-CCE-EEEEecCCChhHHHHHHhcCCeeEEEccccc----C-C-CCCCceeEEEEccchh
Q 043503 279 IGLDIGGG-TGTFAARMRER-NVT-IITTSLNLDGPFNSFIASRGLISMHISVSQR----L-P-FFENTLDIVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIGcG-tG~~a~~La~~-g~~-Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~----l-p-f~d~sfDlV~~~~~L~ 349 (430)
+||-.|+| .|..+..+++. |.+ |+++ +.++...+.+++-|...++...... + . .+.+.+|+|+..-.
T Consensus 185 ~vLI~g~g~vG~a~i~lak~~G~~~Vi~~--~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld~~~-- 260 (363)
T cd08279 185 TVAVIGCGGVGLNAIQGARIAGASRIIAV--DPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFEAVG-- 260 (363)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCcEEEE--cCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEEcCC--
Confidence 34555764 46666666666 875 7766 4445555666555643322221111 1 0 12456898886311
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
. ...+.++.+.|+++|.++..
T Consensus 261 ----~---~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 261 ----R---AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred ----C---hHHHHHHHHHhhcCCeEEEE
Confidence 1 13567889999999998764
No 380
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=48.41 E-value=1.2e+02 Score=31.34 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=53.7
Q ss_pred EEEcCCc-cHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEc---cc-ccCC--CCCCceeEEEEccchhh--
Q 043503 281 LDIGGGT-GTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHIS---VS-QRLP--FFENTLDIVHSMHVLSN-- 350 (430)
Q Consensus 281 LDIGcGt-G~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~---d~-~~lp--f~d~sfDlV~~~~~L~~-- 350 (430)
|=.|+|. |.++..+++. |.+++.+ .|.++.-++.+++.|.-.+... +. +.+. .....+|+|+-.-....
T Consensus 190 lV~G~G~iG~~aiqlAk~~Ga~~vi~-~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G~~~~~ 268 (393)
T TIGR02819 190 YIAGAGPVGLAAAASAQLLGAAVVIV-GDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCVGFEARG 268 (393)
T ss_pred EEECCCHHHHHHHHHHHHcCCceEEE-eCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEECCCCcccc
Confidence 4466643 4555556654 8765443 2556667788887776322111 11 0010 12346899987422210
Q ss_pred cC---CchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 351 WI---PDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 351 ~~---~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
+. ........+.+..+++|+||.+++...+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 269 HGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred ccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 00 0001124788889999999999987654
No 381
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=47.62 E-value=1.9e+02 Score=28.60 Aligned_cols=112 Identities=17% Similarity=0.137 Sum_probs=60.1
Q ss_pred EEcCCc--cHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHH
Q 043503 282 DIGGGT--GTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEF 359 (430)
Q Consensus 282 DIGcGt--G~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~ 359 (430)
=||+|. ..++..+++.|.+|+.. |.++...+.+.+.|.. . ..+...+.-.....|+|+.. + .+......
T Consensus 5 ~IGlG~MG~~mA~~L~~~g~~v~v~--dr~~~~~~~~~~~g~~-~-~~~~~e~~~~~~~~dvvi~~--v---~~~~~~~~ 75 (301)
T PRK09599 5 MIGLGRMGGNMARRLLRGGHEVVGY--DRNPEAVEALAEEGAT-G-ADSLEELVAKLPAPRVVWLM--V---PAGEITDA 75 (301)
T ss_pred EEcccHHHHHHHHHHHHCCCeEEEE--ECCHHHHHHHHHCCCe-e-cCCHHHHHhhcCCCCEEEEE--e---cCCcHHHH
Confidence 366665 24666777778888887 5555555555554532 1 11111111000124777773 1 11113566
Q ss_pred HHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEE
Q 043503 360 TLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 360 ~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
++..+...+++|. ++++. ..........+.+.+++.|...+.-
T Consensus 76 v~~~l~~~l~~g~-ivid~-st~~~~~~~~~~~~~~~~g~~~~da 118 (301)
T PRK09599 76 TIDELAPLLSPGD-IVIDG-GNSYYKDDIRRAELLAEKGIHFVDV 118 (301)
T ss_pred HHHHHHhhCCCCC-EEEeC-CCCChhHHHHHHHHHHHcCCEEEeC
Confidence 7778888888875 44432 1122223445677788888876653
No 382
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=47.01 E-value=1.5e+02 Score=29.35 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=51.0
Q ss_pred EEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccccC-----C-CCCCceeEEEEccchhhc
Q 043503 281 LDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQRL-----P-FFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 281 LDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l-----p-f~d~sfDlV~~~~~L~~~ 351 (430)
|-.|+|. |..+..+++. |. +|+.+ +.++...+.+.+.|.-.++......+ . ...+.+|+|+....-
T Consensus 168 lV~~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~--- 242 (341)
T PRK05396 168 LITGAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSGA--- 242 (341)
T ss_pred EEECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEECCCC---
Confidence 4456543 5566666665 77 56665 55566666666666522221111111 0 124568999873211
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
...+..+.+.|+++|.++....
T Consensus 243 ------~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 243 ------PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred ------HHHHHHHHHHHhcCCEEEEEec
Confidence 2357788899999999988654
No 383
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=46.84 E-value=3.5e+02 Score=28.40 Aligned_cols=132 Identities=20% Similarity=0.299 Sum_probs=67.1
Q ss_pred hhHHHHHHHccCCC--CCccEEEEEcCCccH-HHHHHHHc-CCEEEEEecCCC------------hhHH----HHHHhcC
Q 043503 261 LDYGIDQVLSMKPL--GTIRIGLDIGGGTGT-FAARMRER-NVTIITTSLNLD------------GPFN----SFIASRG 320 (430)
Q Consensus 261 ~~~~id~lL~~~p~--~~ir~VLDIGcGtG~-~a~~La~~-g~~Vv~vdiD~s------------~~~l----e~a~~rg 320 (430)
.+.+++.++..... ...++|+|.+.|+|. +...+.++ |++|+.+..+++ +..+ +.+++.+
T Consensus 146 ~~~Y~~~l~~~i~~~~~~lkVvvd~~~G~~~~~~~~ll~~lG~~v~~i~~~~d~~F~~~~p~p~~~~~l~~l~~~v~~~~ 225 (443)
T cd03089 146 LPDYIDRLLSDIKLGKRPLKVVVDAGNGAAGPIAPQLLEALGCEVIPLFCEPDGTFPNHHPDPTDPENLEDLIAAVKENG 225 (443)
T ss_pred HHHHHHHHHHhcccccCCCeEEEECCCCchHHHHHHHHHHCCCEEEEecCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC
Confidence 34455655544321 467889999999984 55555555 888876632221 1112 2333333
Q ss_pred C-eeEE-EcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHH-HHHhccCCcEEEEeeccccCcCcHHHHHHHHHHc
Q 043503 321 L-ISMH-ISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYD-IYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRI 397 (430)
Q Consensus 321 ~-i~~~-~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~e-i~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~ 397 (430)
. +-+. -+|+.++-+-|+. .++++.+.+..++.. +.+- ++++.++.+ ..+ ...+.+++++.
T Consensus 226 adlgia~D~DaDR~~ivd~~----------G~~l~~d~~~~lla~~ll~~-~~~~~vv~~-v~s-----s~~~~~ia~~~ 288 (443)
T cd03089 226 ADLGIAFDGDGDRLGVVDEK----------GEIIWGDRLLALFARDILKR-NPGATIVYD-VKC-----SRNLYDFIEEA 288 (443)
T ss_pred CCEEEEecCCcceeEEECCC----------CcEeCHHHHHHHHHHHHHHH-CCCCeEEEe-ccc-----chHHHHHHHHc
Confidence 3 2222 2355555432221 122222222222222 2121 356676654 221 24566778888
Q ss_pred CCEEEEEEeccc
Q 043503 398 GFKKLRWNVGMK 409 (430)
Q Consensus 398 Gfk~l~~~~~~k 409 (430)
|.++++..++.+
T Consensus 289 g~~v~~t~vG~k 300 (443)
T cd03089 289 GGKPIMWKTGHS 300 (443)
T ss_pred CCeEEEecCcHH
Confidence 988888777754
No 384
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=46.73 E-value=2.4e+02 Score=27.36 Aligned_cols=86 Identities=16% Similarity=0.130 Sum_probs=49.5
Q ss_pred EEEEEcCC-ccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchh
Q 043503 279 IGLDIGGG-TGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 279 ~VLDIGcG-tG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
+||=.|+| .|..+..+++. |++++.+ +.++...+.+++.|..... +.... ...+.+|+|+.... .
T Consensus 158 ~vlV~g~g~vg~~~~q~a~~~G~~vi~~--~~~~~~~~~~~~~g~~~~~--~~~~~-~~~~~~d~vid~~g------~-- 224 (319)
T cd08242 158 KVAVLGDGKLGLLIAQVLALTGPDVVLV--GRHSEKLALARRLGVETVL--PDEAE-SEGGGFDVVVEATG------S-- 224 (319)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEE--cCCHHHHHHHHHcCCcEEe--Ccccc-ccCCCCCEEEECCC------C--
Confidence 34555643 23344444444 8888777 5556667777765542111 11111 23456999987311 1
Q ss_pred HHHHHHHHHHhccCCcEEEEee
Q 043503 357 LEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 357 l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+..+.+.|+++|.++...
T Consensus 225 -~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 225 -PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred -hHHHHHHHHHhhcCCEEEEEc
Confidence 235677788999999998643
No 385
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=46.28 E-value=91 Score=30.66 Aligned_cols=83 Identities=10% Similarity=0.051 Sum_probs=48.1
Q ss_pred CCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccchhhcCCchhH
Q 043503 285 GGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVLSNWIPDSML 357 (430)
Q Consensus 285 cGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L~~~~~d~~l 357 (430)
.+.|.++..+++. |.+|+++ +.++...+.+++-|.-.++......+. .....+|+|+..-. .
T Consensus 154 g~vG~~a~q~a~~~G~~vi~~--~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g------~--- 222 (324)
T cd08291 154 SALGRMLVRLCKADGIKVINI--VRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVG------G--- 222 (324)
T ss_pred cHHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCC------c---
Confidence 3456666667666 8888877 445666677766665333322211110 12346899886311 1
Q ss_pred HHHHHHHHHhccCCcEEEEeec
Q 043503 358 EFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 358 ~~~L~ei~RvLrPGG~lvl~~f 379 (430)
.......+.+++||.++....
T Consensus 223 -~~~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 223 -GLTGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred -HHHHHHHHhhCCCCEEEEEEe
Confidence 123456778899999887553
No 386
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=46.24 E-value=93 Score=28.74 Aligned_cols=89 Identities=20% Similarity=0.235 Sum_probs=51.6
Q ss_pred EEEEEcCCccH--HHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchh
Q 043503 279 IGLDIGGGTGT--FAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 279 ~VLDIGcGtG~--~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
+|.=||.|+=. .+..|.+.|++|+... .......+.|++.|.-..-..++- ...|+|+. .+||+.
T Consensus 6 ~IAViGyGsQG~a~AlNLrDSG~~V~Vgl-r~~s~s~~~A~~~Gf~v~~~~eAv------~~aDvV~~------L~PD~~ 72 (165)
T PF07991_consen 6 TIAVIGYGSQGHAHALNLRDSGVNVIVGL-REGSASWEKAKADGFEVMSVAEAV------KKADVVML------LLPDEV 72 (165)
T ss_dssp EEEEES-SHHHHHHHHHHHHCC-EEEEEE--TTCHHHHHHHHTT-ECCEHHHHH------HC-SEEEE-------S-HHH
T ss_pred EEEEECCChHHHHHHHHHHhCCCCEEEEe-cCCCcCHHHHHHCCCeeccHHHHH------hhCCEEEE------eCChHH
Confidence 44778887653 4555666699887552 333446788888887322222221 23688877 266665
Q ss_pred HHHHH-HHHHHhccCCcEEEEeecc
Q 043503 357 LEFTL-YDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 357 l~~~L-~ei~RvLrPGG~lvl~~f~ 380 (430)
...+. .++..-|+||-.+.+.|=|
T Consensus 73 q~~vy~~~I~p~l~~G~~L~fahGf 97 (165)
T PF07991_consen 73 QPEVYEEEIAPNLKPGATLVFAHGF 97 (165)
T ss_dssp HHHHHHHHHHHHS-TT-EEEESSSH
T ss_pred HHHHHHHHHHhhCCCCCEEEeCCcc
Confidence 56665 8899999999999987644
No 387
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=45.83 E-value=3.1e+02 Score=29.08 Aligned_cols=44 Identities=25% Similarity=0.312 Sum_probs=27.9
Q ss_pred hHHHHHHHccCC----CCCccEEEEEcCCccH-HHHHHHHc-CCEEEEEe
Q 043503 262 DYGIDQVLSMKP----LGTIRIGLDIGGGTGT-FAARMRER-NVTIITTS 305 (430)
Q Consensus 262 ~~~id~lL~~~p----~~~ir~VLDIGcGtG~-~a~~La~~-g~~Vv~vd 305 (430)
+.+++.++..+. ....++|+|.+-|+|. ++..+.++ |++|+.+.
T Consensus 170 ~~Y~~~l~~~id~~i~~~~~kVvvD~~nG~~~~~~~~ll~~LG~~v~~l~ 219 (465)
T PRK14317 170 DDYRDALLESLPDRVNLQGVKIVLDLAWGAAVACAPEVFKALGAEVICLH 219 (465)
T ss_pred HHHHHHHHHhcCcccccCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe
Confidence 434555543322 2456889999999985 45555555 88887663
No 388
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=45.68 E-value=1.4e+02 Score=30.00 Aligned_cols=89 Identities=16% Similarity=0.101 Sum_probs=51.3
Q ss_pred EEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccccC----C-CCCCceeEEEEccchhh
Q 043503 279 IGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQRL----P-FFENTLDIVHSMHVLSN 350 (430)
Q Consensus 279 ~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l----p-f~d~sfDlV~~~~~L~~ 350 (430)
+||=.|+|. |..+..+++. |. .++++ +.++...+.+.+.|.-.++......+ . .....+|+|+..-.-
T Consensus 189 ~vlI~g~g~vG~~~~~la~~~G~~~v~~~--~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~-- 264 (365)
T cd08278 189 SIAVFGAGAVGLAAVMAAKIAGCTTIIAV--DIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTGV-- 264 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEE--eCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCCC--
Confidence 346667643 5666666665 87 47776 55566666666656422222111111 0 113468998863111
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+.++.+.|+++|.++...
T Consensus 265 -------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 265 -------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred -------cHHHHHHHHHhccCCEEEEeC
Confidence 125778899999999988754
No 389
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=45.44 E-value=1.1e+02 Score=27.11 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=48.8
Q ss_pred CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC--cHHHHHHHHHHcCCEEEEEE
Q 043503 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ--LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~--~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.+...|+|+..+-- .+..+...|-++.+.|..+|.+|+...-..... ...++.+....+|+...+-.
T Consensus 42 ~ddvvD~vllWwR~----~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr~g~V~~~~I~eaA~taGL~~t~~~ 110 (127)
T PF11253_consen 42 YDDVVDVVLLWWRD----DDGDLVDALVDARTNLADDGVIWVLTPKAGRPGHVEPSDIREAAPTAGLVQTKSC 110 (127)
T ss_pred ccccccEEEEEEEC----CcchHHHHHHHHHhhhcCCCEEEEEccCCCCCCCCCHHHHHHHHhhcCCeeeeee
Confidence 35678999884322 344688999999999999999999865432211 34678999999999876644
No 390
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=45.34 E-value=63 Score=33.18 Aligned_cols=86 Identities=20% Similarity=0.317 Sum_probs=47.4
Q ss_pred EEEcCCc-c-HHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHH
Q 043503 281 LDIGGGT-G-TFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLE 358 (430)
Q Consensus 281 LDIGcGt-G-~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~ 358 (430)
-=||.|. | ..+..+...|.+|++.+ + .....+.+.+.|. . ..+...+ -...|+|+..- |+....
T Consensus 20 GIIG~GsIG~amA~nL~d~G~~ViV~~-r-~~~s~~~A~~~G~-~--v~sl~Ea---ak~ADVV~llL------Pd~~t~ 85 (335)
T PRK13403 20 AVIGYGSQGHAQAQNLRDSGVEVVVGV-R-PGKSFEVAKADGF-E--VMSVSEA---VRTAQVVQMLL------PDEQQA 85 (335)
T ss_pred EEEeEcHHHHHHHHHHHHCcCEEEEEE-C-cchhhHHHHHcCC-E--ECCHHHH---HhcCCEEEEeC------CChHHH
Confidence 5555543 2 23444444489998773 2 2333445555454 2 1222221 13468888842 222233
Q ss_pred HHH-HHHHHhccCCcEEEEeecc
Q 043503 359 FTL-YDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 359 ~~L-~ei~RvLrPGG~lvl~~f~ 380 (430)
.++ .++...|+||..|+++|=|
T Consensus 86 ~V~~~eil~~MK~GaiL~f~hgf 108 (335)
T PRK13403 86 HVYKAEVEENLREGQMLLFSHGF 108 (335)
T ss_pred HHHHHHHHhcCCCCCEEEECCCc
Confidence 444 5799999999999987644
No 391
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=45.31 E-value=29 Score=33.62 Aligned_cols=118 Identities=11% Similarity=-0.001 Sum_probs=61.2
Q ss_pred cCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc----CCEEEEEecCCChhHHHHHHhc-------------
Q 043503 257 DNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER----NVTIITTSLNLDGPFNSFIASR------------- 319 (430)
Q Consensus 257 ~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~----g~~Vv~vdiD~s~~~le~a~~r------------- 319 (430)
+-+......++-+..++++..-++.|-.||.|.+.--+.-. =..|++.|+| +.+++.|.++
T Consensus 32 PVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId--~~aL~lA~kNL~LLt~eGL~~R~ 109 (246)
T PF11599_consen 32 PVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDID--EDALELARKNLSLLTPEGLEARR 109 (246)
T ss_dssp -HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES---HHHHHHHHHHHHCCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCC--HHHHHHHHHhhhhccHhHHHHHH
Confidence 33334444556667776655457799999999877666433 2467888554 6666555332
Q ss_pred ----------CC-------------------------eeEEEccccc------CCCCCCceeEEEEccch---hhcCC--
Q 043503 320 ----------GL-------------------------ISMHISVSQR------LPFFENTLDIVHSMHVL---SNWIP-- 353 (430)
Q Consensus 320 ----------g~-------------------------i~~~~~d~~~------lpf~d~sfDlV~~~~~L---~~~~~-- 353 (430)
|. ..+...|... ++ .....|+|+.--.. .+|..
T Consensus 110 ~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~-~~~~~diViTDlPYG~~t~W~g~~ 188 (246)
T PF11599_consen 110 EELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD-AGFTPDIVITDLPYGEMTSWQGEG 188 (246)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH-TT---SEEEEE--CCCSSSTTS--
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhc-cCCCCCEEEecCCCcccccccCCC
Confidence 11 1233444322 11 12346999984332 23442
Q ss_pred -chhHHHHHHHHHHhccCCcEEEEe
Q 043503 354 -DSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 354 -d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.+-...+|..++.+|-.++++.++
T Consensus 189 ~~~p~~~ml~~l~~vLp~~sVV~v~ 213 (246)
T PF11599_consen 189 SGGPVAQMLNSLAPVLPERSVVAVS 213 (246)
T ss_dssp -HHHHHHHHHHHHCCS-TT-EEEEE
T ss_pred CCCcHHHHHHHHHhhCCCCcEEEEe
Confidence 234678999999999556666664
No 392
>PRK08507 prephenate dehydrogenase; Validated
Probab=45.21 E-value=1.1e+02 Score=29.86 Aligned_cols=80 Identities=15% Similarity=0.180 Sum_probs=46.6
Q ss_pred EEEcCCc--cHHHHHHHHcCC--EEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchh
Q 043503 281 LDIGGGT--GTFAARMRERNV--TIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 281 LDIGcGt--G~~a~~La~~g~--~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
.=||+|. |.++..+.+.|. +|+++ |.++...+.+.+.|.+... .+.... . + .|+|+.. ++...
T Consensus 4 ~iIG~G~mG~sla~~l~~~g~~~~v~~~--d~~~~~~~~~~~~g~~~~~-~~~~~~--~-~-aD~Vila------vp~~~ 70 (275)
T PRK08507 4 GIIGLGLMGGSLGLALKEKGLISKVYGY--DHNELHLKKALELGLVDEI-VSFEEL--K-K-CDVIFLA------IPVDA 70 (275)
T ss_pred EEEccCHHHHHHHHHHHhcCCCCEEEEE--cCCHHHHHHHHHCCCCccc-CCHHHH--h-c-CCEEEEe------CcHHH
Confidence 4467665 456666766664 67776 6566666666666653221 122222 1 2 7998874 23334
Q ss_pred HHHHHHHHHHhccCCcEE
Q 043503 357 LEFTLYDIYRLLRPGGIF 374 (430)
Q Consensus 357 l~~~L~ei~RvLrPGG~l 374 (430)
...++.++.. +++|..+
T Consensus 71 ~~~~~~~l~~-l~~~~iv 87 (275)
T PRK08507 71 IIEILPKLLD-IKENTTI 87 (275)
T ss_pred HHHHHHHHhc-cCCCCEE
Confidence 6667788877 7777633
No 393
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=44.95 E-value=1.4e+02 Score=29.96 Aligned_cols=87 Identities=17% Similarity=0.110 Sum_probs=49.5
Q ss_pred EEEcCC-ccHHHHHHHHc-CCE-EEEEecCCChhHHHHHHhcCCeeEEEcccccC------CCCCCceeEEEEccchhhc
Q 043503 281 LDIGGG-TGTFAARMRER-NVT-IITTSLNLDGPFNSFIASRGLISMHISVSQRL------PFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 281 LDIGcG-tG~~a~~La~~-g~~-Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l------pf~d~sfDlV~~~~~L~~~ 351 (430)
|=.|+| .|..+..+++. |++ ++++ +.++...+.+.+.|...++......+ ...+..+|+|+.. .
T Consensus 192 lI~g~g~vG~~~~~lak~~G~~~vi~~--~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~--v--- 264 (367)
T cd08263 192 AVIGVGGVGSSAIQLAKAFGASPIIAV--DVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVEA--L--- 264 (367)
T ss_pred EEECCcHHHHHHHHHHHHcCCCeEEEE--eCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEEEe--C---
Confidence 444553 45666666665 777 6666 44455566666556433332211111 0134569999873 1
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.. . ..+.++.+.|+++|.++...
T Consensus 265 -g~--~-~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 265 -GK--P-ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred -CC--H-HHHHHHHHHHhcCCEEEEEc
Confidence 11 1 25678889999999987643
No 394
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=44.70 E-value=2.2e+02 Score=26.88 Aligned_cols=88 Identities=16% Similarity=0.047 Sum_probs=51.9
Q ss_pred EEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccC-----C-CCCCceeEEEEccchh
Q 043503 279 IGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRL-----P-FFENTLDIVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l-----p-f~d~sfDlV~~~~~L~ 349 (430)
.||=.|+ +.|..+..++.. |.+|+.+ +.++...+.+++.|.-.++......+ . .....+|+|+....
T Consensus 139 ~vlI~g~~g~~g~~~~~~a~~~g~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~-- 214 (320)
T cd05286 139 TVLVHAAAGGVGLLLTQWAKALGATVIGT--VSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYDGVG-- 214 (320)
T ss_pred EEEEEcCCchHHHHHHHHHHHcCCEEEEE--cCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEECCC--
Confidence 3466663 566677777766 8888877 44455566666666522222211111 0 12346899986311
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
. ..+....+.|+++|.++...
T Consensus 215 ----~----~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 215 ----K----DTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred ----c----HhHHHHHHhhccCcEEEEEe
Confidence 1 24567788999999988643
No 395
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=44.58 E-value=1e+02 Score=34.69 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=28.1
Q ss_pred CchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc
Q 043503 259 GKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER 297 (430)
Q Consensus 259 ~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~ 297 (430)
.+.+|-++.++..+... .+-.|-.|-|+|.+++.+.+.
T Consensus 306 TGAHYKlRsIL~~~~i~-~~d~l~~GDGSGGita~lLR~ 343 (675)
T PF14314_consen 306 TGAHYKLRSILKNLNIK-YRDALCGGDGSGGITACLLRM 343 (675)
T ss_pred ccchhhHHHHHHhcCCC-cceeEEEecCchHHHHHHHHh
Confidence 34566677777655432 356799999999999999887
No 396
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=44.57 E-value=31 Score=33.38 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=24.4
Q ss_pred EEEEEcCCccHHHHHHHHc----------CCEEEEEecCCChhHHHHH
Q 043503 279 IGLDIGGGTGTFAARMRER----------NVTIITTSLNLDGPFNSFI 316 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~----------g~~Vv~vdiD~s~~~le~a 316 (430)
+|+|+|+|+|.++.-+++. ..+++.+ +.|+.+.+.-
T Consensus 21 ~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~iv--E~Sp~L~~~Q 66 (252)
T PF02636_consen 21 RIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIV--EISPYLRERQ 66 (252)
T ss_dssp EEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE---TTCCCHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEE--cCCHHHHHHH
Confidence 5699999999999988765 1366666 6666555443
No 397
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=44.32 E-value=1.4e+02 Score=24.65 Aligned_cols=109 Identities=15% Similarity=0.074 Sum_probs=62.1
Q ss_pred EEEEcCCccH--HHHHHHHc--CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCch
Q 043503 280 GLDIGGGTGT--FAARMRER--NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 280 VLDIGcGtG~--~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
+.=||+|... ....+.+. +.+++++ .|.++...+.+.++..+. ...+.+.+. .+...|+|+....-..
T Consensus 3 v~iiG~G~~g~~~~~~~~~~~~~~~v~~v-~d~~~~~~~~~~~~~~~~-~~~~~~~ll-~~~~~D~V~I~tp~~~----- 74 (120)
T PF01408_consen 3 VGIIGAGSIGRRHLRALLRSSPDFEVVAV-CDPDPERAEAFAEKYGIP-VYTDLEELL-ADEDVDAVIIATPPSS----- 74 (120)
T ss_dssp EEEESTSHHHHHHHHHHHHTTTTEEEEEE-ECSSHHHHHHHHHHTTSE-EESSHHHHH-HHTTESEEEEESSGGG-----
T ss_pred EEEECCcHHHHHHHHHHHhcCCCcEEEEE-EeCCHHHHHHHHHHhccc-chhHHHHHH-HhhcCCEEEEecCCcc-----
Confidence 3557886542 22334443 5677766 577776665544443334 333343332 2346999887422211
Q ss_pred hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCE
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFK 400 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk 400 (430)
-..-+.++|+-|-.+++...++...+..+.+.++.++.|-.
T Consensus 75 ----h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 75 ----HAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp ----HHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred ----hHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence 13345566777878888777766655556677777776644
No 398
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=43.82 E-value=2.6e+02 Score=25.60 Aligned_cols=112 Identities=18% Similarity=0.187 Sum_probs=62.9
Q ss_pred cEEEEEcCCccHHHHHH-HHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccc---cCC-CCCCceeEEEEccchhhcC
Q 043503 278 RIGLDIGGGTGTFAARM-RERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQ---RLP-FFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~L-a~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~---~lp-f~d~sfDlV~~~~~L~~~~ 352 (430)
.+|+-|||=+-..+..- ...+.++.-.|+|. .++.-.+. .|..-|.. .+| .-.++||+|++-..+ .
T Consensus 27 ~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~-----RF~~~~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPF---l 97 (162)
T PF10237_consen 27 TRIACLSTPSLYEALKKESKPRIQSFLLEYDR-----RFEQFGGD-EFVFYDYNEPEELPEELKGKFDVVVIDPPF---L 97 (162)
T ss_pred CEEEEEeCcHHHHHHHhhcCCCccEEEEeecc-----hHHhcCCc-ceEECCCCChhhhhhhcCCCceEEEECCCC---C
Confidence 44698988776655544 11266777776663 22221112 24444432 233 125799999996555 3
Q ss_pred CchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.++-+..+..-+.-++++++.+++.. +....+.+.+++ |++.....
T Consensus 98 ~~ec~~k~a~ti~~L~k~~~kii~~T----g~~~~~~~~~ll---~~~~~~f~ 143 (162)
T PF10237_consen 98 SEECLTKTAETIRLLLKPGGKIILCT----GEEMEELIKKLL---GLRMCDFQ 143 (162)
T ss_pred CHHHHHHHHHHHHHHhCccceEEEec----HHHHHHHHHHHh---CeeEEeEE
Confidence 33335566666777778888888743 222233344444 77776654
No 399
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.69 E-value=2.2e+02 Score=29.39 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=58.0
Q ss_pred EEEEEcCCc-cHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhcCCeeEEEccccc-CC---------CCCCceeEEEEc
Q 043503 279 IGLDIGGGT-GTFAARMRER-N-VTIITTSLNLDGPFNSFIASRGLISMHISVSQR-LP---------FFENTLDIVHSM 345 (430)
Q Consensus 279 ~VLDIGcGt-G~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~-lp---------f~d~sfDlV~~~ 345 (430)
+||=+|+|. |..+...++. | .+|+.+ |..++-++.|++-|.-.+....... .. +....+|+++..
T Consensus 172 ~vLV~GAGPIGl~t~l~Aka~GA~~VVi~--d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dC 249 (354)
T KOG0024|consen 172 KVLVLGAGPIGLLTGLVAKAMGASDVVIT--DLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDC 249 (354)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCCcEEEe--ecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEc
Confidence 459999997 4555555555 5 477777 7778889999986662222221111 00 223558888875
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
..+ +..++-....+|+||.+++..+-
T Consensus 250 sG~---------~~~~~aai~a~r~gGt~vlvg~g 275 (354)
T KOG0024|consen 250 SGA---------EVTIRAAIKATRSGGTVVLVGMG 275 (354)
T ss_pred cCc---------hHHHHHHHHHhccCCEEEEeccC
Confidence 444 33566678899999998876543
No 400
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.49 E-value=2.6e+02 Score=29.72 Aligned_cols=90 Identities=9% Similarity=0.131 Sum_probs=56.1
Q ss_pred cHHHHHHHHcCCEEEEEecC-CChhHHHHHHh---cCCeeEEEcccccCC----------CCCCceeEEEEccchhhcCC
Q 043503 288 GTFAARMRERNVTIITTSLN-LDGPFNSFIAS---RGLISMHISVSQRLP----------FFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 288 G~~a~~La~~g~~Vv~vdiD-~s~~~le~a~~---rg~i~~~~~d~~~lp----------f~d~sfDlV~~~~~L~~~~~ 353 (430)
+-+|.++.++|.++.-+.-| +.+...+..++ +-.++|+....+.-| |..+.||+|++-..-+|..
T Consensus 119 ~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~q- 197 (483)
T KOG0780|consen 119 TKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQ- 197 (483)
T ss_pred HHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhh-
Confidence 35666777777766443334 33333333332 233677765444333 4567899999966665544
Q ss_pred chhHHHHHHHHHHhccCCcEEEEee
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+..+-.-+.++.+.++|.-.+++.+
T Consensus 198 e~sLfeEM~~v~~ai~Pd~vi~VmD 222 (483)
T KOG0780|consen 198 EASLFEEMKQVSKAIKPDEIIFVMD 222 (483)
T ss_pred hHHHHHHHHHHHhhcCCCeEEEEEe
Confidence 4456677888999999999888765
No 401
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=43.38 E-value=1.6e+02 Score=29.14 Aligned_cols=90 Identities=18% Similarity=0.117 Sum_probs=50.0
Q ss_pred cEEEEEcCC-ccHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEccccc----CC-CCCCceeEEEEccchh
Q 043503 278 RIGLDIGGG-TGTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQR----LP-FFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcG-tG~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~----lp-f~d~sfDlV~~~~~L~ 349 (430)
.+||-.|+| .|..+..+++. |. +|+.+ +.++...+.+.+-|.-.++...... +. ...+.+|+|+.....
T Consensus 177 ~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~- 253 (350)
T cd08240 177 EPVVIIGAGGLGLMALALLKALGPANIIVV--DIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVNN- 253 (350)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEE--eCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhCCCCcEEEECCCC-
Confidence 345666654 34555555555 87 66666 4455556666655642222211111 10 112268888873111
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+.++.+.|+++|.++...
T Consensus 254 --------~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 254 --------SATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred --------HHHHHHHHHHhhcCCeEEEEC
Confidence 235788899999999988643
No 402
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=42.62 E-value=2.4e+02 Score=27.01 Aligned_cols=86 Identities=24% Similarity=0.279 Sum_probs=52.8
Q ss_pred EEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccC-----CCCCCceeEEEEccchhh
Q 043503 279 IGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRL-----PFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 279 ~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l-----pf~d~sfDlV~~~~~L~~ 350 (430)
.||=.|+ +.|..+..+++. |++|+.+ ..++...+.+.+.|.-.++.. ...+ .. .+.+|+|+..-.
T Consensus 145 ~vlV~ga~g~~g~~~~~~a~~~g~~v~~~--~~~~~~~~~~~~~g~~~~~~~-~~~~~~~i~~~-~~~~d~vl~~~~--- 217 (320)
T cd08243 145 TLLIRGGTSSVGLAALKLAKALGATVTAT--TRSPERAALLKELGADEVVID-DGAIAEQLRAA-PGGFDKVLELVG--- 217 (320)
T ss_pred EEEEEcCCChHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHhcCCcEEEec-CccHHHHHHHh-CCCceEEEECCC---
Confidence 3466664 667777777776 8898877 444555666666665222211 1111 12 456899986311
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+.++.+.|+++|.++...
T Consensus 218 -------~~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 218 -------TATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred -------hHHHHHHHHHhccCCEEEEEc
Confidence 124778889999999987654
No 403
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=42.59 E-value=1.9e+02 Score=28.29 Aligned_cols=90 Identities=18% Similarity=0.129 Sum_probs=49.8
Q ss_pred EEEcC-CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEccccc----CC--CCCCceeEEEEccchhhcC
Q 043503 281 LDIGG-GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQR----LP--FFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 281 LDIGc-GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~----lp--f~d~sfDlV~~~~~L~~~~ 352 (430)
|=.|+ +.|..+..+++. |.+|+.++.+-+....+.+.+.|.-.+ ...... +. .....+|+|+....-
T Consensus 169 lI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~l~~~~~~~~vd~vld~~g~---- 243 (306)
T cd08258 169 VVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADAV-NGGEEDLAELVNEITDGDGADVVIECSGA---- 243 (306)
T ss_pred EEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhCCccc-CCCcCCHHHHHHHHcCCCCCCEEEECCCC----
Confidence 33443 345566666665 888876644434444455555564222 111111 00 123568998874211
Q ss_pred CchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
...+....+.|+++|.++.....
T Consensus 244 -----~~~~~~~~~~l~~~G~~v~~g~~ 266 (306)
T cd08258 244 -----VPALEQALELLRKGGRIVQVGIF 266 (306)
T ss_pred -----hHHHHHHHHHhhcCCEEEEEccc
Confidence 23577888999999999876544
No 404
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=42.46 E-value=2.1e+02 Score=28.95 Aligned_cols=91 Identities=10% Similarity=-0.024 Sum_probs=53.1
Q ss_pred EEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcc-----c-ccCC-CCCCceeEEEEccch
Q 043503 279 IGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISV-----S-QRLP-FFENTLDIVHSMHVL 348 (430)
Q Consensus 279 ~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d-----~-~~lp-f~d~sfDlV~~~~~L 348 (430)
+||=.|+|. |.+++.+++. |. +|+++ +.++.-.+.+++.|.-.++... . +.+. ...+.+|+|+-.-.-
T Consensus 188 ~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~--~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~ 265 (368)
T TIGR02818 188 TVAVFGLGGIGLSVIQGARMAKASRIIAI--DINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECIGN 265 (368)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECCCC
Confidence 446667653 5566666665 87 68877 5567777788776752222111 0 0010 112358988873111
Q ss_pred hhcCCchhHHHHHHHHHHhccCC-cEEEEeecc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPG-GIFWLDRFF 380 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPG-G~lvl~~f~ 380 (430)
...+.+..+.+++| |.+++....
T Consensus 266 ---------~~~~~~~~~~~~~~~G~~v~~g~~ 289 (368)
T TIGR02818 266 ---------VNVMRAALECCHKGWGESIIIGVA 289 (368)
T ss_pred ---------HHHHHHHHHHhhcCCCeEEEEecc
Confidence 23567778889986 998876543
No 405
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=42.27 E-value=1.6e+02 Score=29.64 Aligned_cols=91 Identities=13% Similarity=0.042 Sum_probs=52.1
Q ss_pred EEEEEcCC-ccHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEccc--ccC-----CCCCCceeEEEEccch
Q 043503 279 IGLDIGGG-TGTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVS--QRL-----PFFENTLDIVHSMHVL 348 (430)
Q Consensus 279 ~VLDIGcG-tG~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~--~~l-----pf~d~sfDlV~~~~~L 348 (430)
+||=.|+| .|.++..+++. |. +|+++ +.++...+.+++-|...++.... ..+ ....+.+|+|+-.-.-
T Consensus 190 ~VlV~G~g~vG~~a~q~ak~~G~~~vi~~--~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G~ 267 (369)
T cd08301 190 TVAIFGLGAVGLAVAEGARIRGASRIIGV--DLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECTGN 267 (369)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECCCC
Confidence 34666653 24555556655 87 78877 55566677777666533332111 011 0122368888863111
Q ss_pred hhcCCchhHHHHHHHHHHhccCC-cEEEEeecc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPG-GIFWLDRFF 380 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPG-G~lvl~~f~ 380 (430)
...+....+.+++| |.+++..+.
T Consensus 268 ---------~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 268 ---------IDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred ---------hHHHHHHHHHhhcCCCEEEEECcC
Confidence 23566778889996 999876654
No 406
>PRK06545 prephenate dehydrogenase; Validated
Probab=41.69 E-value=1.1e+02 Score=31.39 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=43.6
Q ss_pred EEEcCCc--cHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHH
Q 043503 281 LDIGGGT--GTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLE 358 (430)
Q Consensus 281 LDIGcGt--G~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~ 358 (430)
.=||.|. |.++..+.+.|..+..++.|.+......+...+.+.-...+.... -...|+|+.. +|.....
T Consensus 4 ~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~aDlVila------vP~~~~~ 74 (359)
T PRK06545 4 LIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRA---AAEADLIVLA------VPVDATA 74 (359)
T ss_pred EEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHH---hcCCCEEEEe------CCHHHHH
Confidence 4456654 456666666677777666666553333332223322111111111 1457988884 2333366
Q ss_pred HHHHHHHH-hccCCc
Q 043503 359 FTLYDIYR-LLRPGG 372 (430)
Q Consensus 359 ~~L~ei~R-vLrPGG 372 (430)
.++.++.. .++||-
T Consensus 75 ~vl~~l~~~~l~~~~ 89 (359)
T PRK06545 75 ALLAELADLELKPGV 89 (359)
T ss_pred HHHHHHhhcCCCCCc
Confidence 77788876 377773
No 407
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=41.48 E-value=76 Score=33.43 Aligned_cols=86 Identities=15% Similarity=0.057 Sum_probs=49.2
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCch
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
++|+=+|+|. |...+..++. |.+|+++|.|.. ....+...|. .+ .+.+.. . ...|+|++.-.-
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~--r~~~A~~~G~-~v--~~leea-l--~~aDVVItaTG~------- 260 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI--RALEAAMDGF-RV--MTMEEA-A--KIGDIFITATGN------- 260 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh--hHHHHHhcCC-Ee--CCHHHH-H--hcCCEEEECCCC-------
Confidence 4568888887 4433333333 899998866643 2333444453 21 122211 1 346998874221
Q ss_pred hHHHHHH-HHHHhccCCcEEEEeecc
Q 043503 356 MLEFTLY-DIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 356 ~l~~~L~-ei~RvLrPGG~lvl~~f~ 380 (430)
..++. +....+|+|++++....+
T Consensus 261 --~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 261 --KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred --HHHHHHHHHhcCCCCcEEEEECCC
Confidence 22343 588899999999876554
No 408
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=41.23 E-value=74 Score=33.73 Aligned_cols=86 Identities=17% Similarity=0.163 Sum_probs=47.8
Q ss_pred cEEEEEcCCc-cHHHH-HHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCch
Q 043503 278 RIGLDIGGGT-GTFAA-RMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~-~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
++|+=+|+|. |...+ .+...|++|+.+|.|. .....+...|. .+ .+.+.. -..+|+|+..-..
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp--~ra~~A~~~G~-~v--~~l~ea---l~~aDVVI~aTG~------- 277 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP--ICALQAAMDGF-RV--MTMEEA---AELGDIFVTATGN------- 277 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc--hhhHHHHhcCC-Ee--cCHHHH---HhCCCEEEECCCC-------
Confidence 4568888875 22222 2333389999886554 22233333343 21 122221 1358999884211
Q ss_pred hHHHHHH-HHHHhccCCcEEEEeecc
Q 043503 356 MLEFTLY-DIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 356 ~l~~~L~-ei~RvLrPGG~lvl~~f~ 380 (430)
..++. +..+.+|+|++++....+
T Consensus 278 --~~vI~~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 278 --KDVITAEHMEAMKDGAILANIGHF 301 (425)
T ss_pred --HHHHHHHHHhcCCCCCEEEEcCCC
Confidence 22443 788899999998876544
No 409
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=41.17 E-value=2e+02 Score=28.97 Aligned_cols=91 Identities=10% Similarity=0.002 Sum_probs=52.1
Q ss_pred EEEEEcCC-ccHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccc--cC-----CCCCCceeEEEEccch
Q 043503 279 IGLDIGGG-TGTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQ--RL-----PFFENTLDIVHSMHVL 348 (430)
Q Consensus 279 ~VLDIGcG-tG~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~--~l-----pf~d~sfDlV~~~~~L 348 (430)
+||=+|+| .|.++..+++. |. .|+++ +.++...+.+++-|.-.++..... .+ ...++.+|+|+-.-.-
T Consensus 189 ~VlV~G~G~vG~~a~~~ak~~G~~~vi~~--~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g~ 266 (368)
T cd08300 189 TVAVFGLGAVGLAVIQGAKAAGASRIIGI--DINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIGN 266 (368)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEE--eCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCCC
Confidence 34666654 34566666665 87 68777 555666777766665222211100 00 0112368999873111
Q ss_pred hhcCCchhHHHHHHHHHHhccCC-cEEEEeecc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPG-GIFWLDRFF 380 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPG-G~lvl~~f~ 380 (430)
...+.+..+.|++| |.+++....
T Consensus 267 ---------~~~~~~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 267 ---------VKVMRAALEACHKGWGTSVIIGVA 290 (368)
T ss_pred ---------hHHHHHHHHhhccCCCeEEEEccC
Confidence 13567778899997 998876644
No 410
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=40.91 E-value=4.5e+02 Score=27.60 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCccH-HHHHHHHc-CCEEEEEe
Q 043503 275 GTIRIGLDIGGGTGT-FAARMRER-NVTIITTS 305 (430)
Q Consensus 275 ~~ir~VLDIGcGtG~-~a~~La~~-g~~Vv~vd 305 (430)
...++|+|.+.|+|. ++..+.++ |++|+.+.
T Consensus 172 ~~lkVvvd~~~G~~~~~~~~ll~~lg~~v~~~~ 204 (445)
T cd05803 172 RNFKVAVDSVNGAGGLLIPRLLEKLGCEVIVLN 204 (445)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEeC
Confidence 357889999999986 44556655 88887653
No 411
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=40.62 E-value=51 Score=35.38 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=52.2
Q ss_pred EEEEEcCCccHHHHHHHHc--CCEEE-EE---ecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcC
Q 043503 279 IGLDIGGGTGTFAARMRER--NVTII-TT---SLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~--g~~Vv-~v---diD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
+|+=||||+=..+..+--+ |+.|+ +. .+|......+.|.+.|. . +.+.... -...|+|+.. +
T Consensus 38 tIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF-~--v~~~~Ea---~~~ADvVviL------l 105 (487)
T PRK05225 38 KIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF-K--VGTYEEL---IPQADLVINL------T 105 (487)
T ss_pred EEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC-c--cCCHHHH---HHhCCEEEEc------C
Confidence 3488888875443333222 66665 11 12333444556666665 1 1222111 2357999883 4
Q ss_pred CchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
|+.....+..++...||||..|.++|=|
T Consensus 106 PDt~q~~v~~~i~p~LK~Ga~L~fsHGF 133 (487)
T PRK05225 106 PDKQHSDVVRAVQPLMKQGAALGYSHGF 133 (487)
T ss_pred ChHHHHHHHHHHHhhCCCCCEEEecCCc
Confidence 4444556669999999999999988744
No 412
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=39.45 E-value=1.6e+02 Score=28.82 Aligned_cols=83 Identities=16% Similarity=0.081 Sum_probs=47.2
Q ss_pred EEEcCCc-cHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHH
Q 043503 281 LDIGGGT-GTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLE 358 (430)
Q Consensus 281 LDIGcGt-G~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~ 358 (430)
|=.|+|. |..+..+++. |.+|+.+ +.++...+.+++-|.-.++.. +.. +++.+|+++.... . .
T Consensus 172 lV~g~g~vg~~~~~la~~~g~~v~~~--~~~~~~~~~~~~~g~~~~~~~--~~~--~~~~vD~vi~~~~------~---~ 236 (329)
T cd08298 172 GLYGFGASAHLALQIARYQGAEVFAF--TRSGEHQELARELGADWAGDS--DDL--PPEPLDAAIIFAP------V---G 236 (329)
T ss_pred EEECCcHHHHHHHHHHHHCCCeEEEE--cCChHHHHHHHHhCCcEEecc--Ccc--CCCcccEEEEcCC------c---H
Confidence 4456542 3344444444 8888777 444555666665564222211 111 2456888775211 1 1
Q ss_pred HHHHHHHHhccCCcEEEEee
Q 043503 359 FTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 359 ~~L~ei~RvLrPGG~lvl~~ 378 (430)
..+.++.+.|+++|.++...
T Consensus 237 ~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 237 ALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred HHHHHHHHHhhcCCEEEEEc
Confidence 36788999999999998754
No 413
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.35 E-value=1.2e+02 Score=26.56 Aligned_cols=83 Identities=17% Similarity=0.318 Sum_probs=53.1
Q ss_pred EEEEEcCCcc-HHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC--CCCCceeEEEEccchhhcCCch
Q 043503 279 IGLDIGGGTG-TFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP--FFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 279 ~VLDIGcGtG-~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp--f~d~sfDlV~~~~~L~~~~~d~ 355 (430)
+|.++|-|-= ..+.+|+++|+.|+++|++.+ .+. .| +.++..|..+-. .. ...|+|.+.+.- +
T Consensus 16 kVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-----~a~-~g-~~~v~DDitnP~~~iY-~~A~lIYSiRpp----p-- 81 (129)
T COG1255 16 KVVEVGIGFFLDVAKRLAERGFDVLATDINEK-----TAP-EG-LRFVVDDITNPNISIY-EGADLIYSIRPP----P-- 81 (129)
T ss_pred cEEEEccchHHHHHHHHHHcCCcEEEEecccc-----cCc-cc-ceEEEccCCCccHHHh-hCccceeecCCC----H--
Confidence 3499988775 578888999999999977543 222 22 578888876522 22 246888884332 2
Q ss_pred hHHHHHHHHHHhccCCcEEEEe
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.+...+-++.+.++- -+++.
T Consensus 82 El~~~ildva~aVga--~l~I~ 101 (129)
T COG1255 82 ELQSAILDVAKAVGA--PLYIK 101 (129)
T ss_pred HHHHHHHHHHHhhCC--CEEEE
Confidence 266677777776653 34543
No 414
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=38.81 E-value=2.1e+02 Score=28.65 Aligned_cols=94 Identities=17% Similarity=0.135 Sum_probs=58.0
Q ss_pred ccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCC---eeEEEccccc--CCCC-CCceeEE
Q 043503 270 SMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGL---ISMHISVSQR--LPFF-ENTLDIV 342 (430)
Q Consensus 270 ~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~---i~~~~~d~~~--lpf~-d~sfDlV 342 (430)
...++..+ .|--..+|.|.++..|++. |.+++++ ...++-.+.++++|. |.+...|.-+ ..+. ....|++
T Consensus 143 ~vkpGhtV-lvhaAAGGVGlll~Ql~ra~~a~tI~~--asTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngKGVd~v 219 (336)
T KOG1197|consen 143 NVKPGHTV-LVHAAAGGVGLLLCQLLRAVGAHTIAT--ASTAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGKGVDAV 219 (336)
T ss_pred CCCCCCEE-EEEeccccHHHHHHHHHHhcCcEEEEE--eccHHHHHHHHhcCCcceeeccchhHHHHHHhccCCCCceee
Confidence 34555443 3344567889888888876 8877776 444666788888887 3333333211 1122 4568888
Q ss_pred EEccchhhcCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 343 HSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 343 ~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
.-+-.- ..+..-...|||+|+++-
T Consensus 220 yDsvG~----------dt~~~sl~~Lk~~G~mVS 243 (336)
T KOG1197|consen 220 YDSVGK----------DTFAKSLAALKPMGKMVS 243 (336)
T ss_pred eccccc----------hhhHHHHHHhccCceEEE
Confidence 764221 245667788999999864
No 415
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=38.50 E-value=4.8e+02 Score=27.24 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=29.4
Q ss_pred hhHHHHHHHccCCC---CCccEEEEEcCCccH-HHHHHHHc-CCEEEEEe
Q 043503 261 LDYGIDQVLSMKPL---GTIRIGLDIGGGTGT-FAARMRER-NVTIITTS 305 (430)
Q Consensus 261 ~~~~id~lL~~~p~---~~ir~VLDIGcGtG~-~a~~La~~-g~~Vv~vd 305 (430)
.+.+++.+...... ...++|+|.+-|+|. +...+.++ |++|+.+.
T Consensus 151 ~~~Y~~~l~~~~~~~~~~~lkVvvD~~nG~~~~~~~~ll~~lg~~v~~in 200 (434)
T cd05802 151 RGRYIEFLKSTFPKDLLSGLKIVLDCANGAAYKVAPEVFRELGAEVIVIN 200 (434)
T ss_pred HHHHHHHHHHhcCccccCCCEEEEECCCchHHHHHHHHHHHcCCeEEEec
Confidence 34456666554432 367889999999986 44455555 88887663
No 416
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=38.42 E-value=5.1e+02 Score=27.49 Aligned_cols=49 Identities=18% Similarity=0.320 Sum_probs=31.6
Q ss_pred chhHHHHHHHccCC----CCCccEEEEEcCCccH-HHHHHHHc-CCEEEEEecCC
Q 043503 260 KLDYGIDQVLSMKP----LGTIRIGLDIGGGTGT-FAARMRER-NVTIITTSLNL 308 (430)
Q Consensus 260 ~~~~~id~lL~~~p----~~~ir~VLDIGcGtG~-~a~~La~~-g~~Vv~vdiD~ 308 (430)
..+.+++.+.+..+ ....++|+|.+.|+|. ++..+.+. |+.|+.+..++
T Consensus 158 ~~~~Y~~~i~~~~~~~~~~~~lkVv~d~~nGaa~~~~~~ll~~lG~~vv~~~~~p 212 (464)
T COG1109 158 ALDRYIEFIKSLVDVDLKLRGLKVVVDCANGAAGLVAPRLLKELGAEVVSINCDP 212 (464)
T ss_pred hHHHHHHHHHHhcccccccCCcEEEEECCCCchhHHHHHHHHHcCCEEEEecCCC
Confidence 34555666655433 2336889999999984 55556554 88887764443
No 417
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=38.15 E-value=2.3e+02 Score=24.73 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=44.6
Q ss_pred EEEcCCcc--HHHHHHHHcCCEEEEEecCCChhHHHHHHhc-CCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhH
Q 043503 281 LDIGGGTG--TFAARMRERNVTIITTSLNLDGPFNSFIASR-GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSML 357 (430)
Q Consensus 281 LDIGcGtG--~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r-g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l 357 (430)
==||+|.= .++..+.+.|+.|.++ ...+....+.+..+ +-..+ .+.... ....|+|+.. ++|+.+
T Consensus 14 ~iIGaGrVG~~La~aL~~ag~~v~~v-~srs~~sa~~a~~~~~~~~~--~~~~~~---~~~aDlv~ia------vpDdaI 81 (127)
T PF10727_consen 14 GIIGAGRVGTALARALARAGHEVVGV-YSRSPASAERAAAFIGAGAI--LDLEEI---LRDADLVFIA------VPDDAI 81 (127)
T ss_dssp EEECTSCCCCHHHHHHHHTTSEEEEE-SSCHH-HHHHHHC--TT-------TTGG---GCC-SEEEE-------S-CCHH
T ss_pred EEECCCHHHHHHHHHHHHCCCeEEEE-EeCCcccccccccccccccc--cccccc---cccCCEEEEE------echHHH
Confidence 44788763 5778888889999887 34444344444432 11111 122221 2458999883 566667
Q ss_pred HHHHHHHHHh--ccCCcEEEE
Q 043503 358 EFTLYDIYRL--LRPGGIFWL 376 (430)
Q Consensus 358 ~~~L~ei~Rv--LrPGG~lvl 376 (430)
..+..++... .+||- +++
T Consensus 82 ~~va~~La~~~~~~~g~-iVv 101 (127)
T PF10727_consen 82 AEVAEQLAQYGAWRPGQ-IVV 101 (127)
T ss_dssp HHHHHHHHCC--S-TT--EEE
T ss_pred HHHHHHHHHhccCCCCc-EEE
Confidence 7777777776 66764 444
No 418
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=37.88 E-value=2.4e+02 Score=28.33 Aligned_cols=91 Identities=11% Similarity=-0.012 Sum_probs=50.7
Q ss_pred EEEEEcCC-ccHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEccc------ccCC-CCCCceeEEEEccch
Q 043503 279 IGLDIGGG-TGTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVS------QRLP-FFENTLDIVHSMHVL 348 (430)
Q Consensus 279 ~VLDIGcG-tG~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~------~~lp-f~d~sfDlV~~~~~L 348 (430)
+||=+|+| .|.+++.+++. |+ +|+++ +.++...+.+++-|.-.++.... +.+. ...+.+|+|+-.-.-
T Consensus 187 ~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~--~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~g~ 264 (365)
T cd08277 187 TVAVFGLGAVGLSAIMGAKIAGASRIIGV--DINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECTGN 264 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEE--eCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECCCC
Confidence 34556764 24455556655 87 68777 54566667776656522221110 0000 112468998863111
Q ss_pred hhcCCchhHHHHHHHHHHhccCC-cEEEEeecc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPG-GIFWLDRFF 380 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPG-G~lvl~~f~ 380 (430)
...+.+..+.+++| |.+++....
T Consensus 265 ---------~~~~~~~~~~l~~~~G~~v~~g~~ 288 (365)
T cd08277 265 ---------ADLMNEALESTKLGWGVSVVVGVP 288 (365)
T ss_pred ---------hHHHHHHHHhcccCCCEEEEEcCC
Confidence 13567788899886 998876543
No 419
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=37.87 E-value=4.1e+02 Score=28.00 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCccH-HHHHHHHc-CCEEEEEe
Q 043503 275 GTIRIGLDIGGGTGT-FAARMRER-NVTIITTS 305 (430)
Q Consensus 275 ~~ir~VLDIGcGtG~-~a~~La~~-g~~Vv~vd 305 (430)
...++|+|.+.|+|. +...+.++ |++|+.+.
T Consensus 172 ~~~kivvd~~~G~~~~~~~~il~~lg~~v~~~~ 204 (461)
T cd05800 172 AGLKVVVDPMYGAGAGYLEELLRGAGVDVEEIR 204 (461)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHcCCCEEEee
Confidence 467889999999995 55556665 88887664
No 420
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=37.62 E-value=1.8e+02 Score=30.22 Aligned_cols=86 Identities=10% Similarity=0.047 Sum_probs=49.4
Q ss_pred EEEcCCccHHHHHHHH----cCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC----CCCCceeEEEEccchhhcC
Q 043503 281 LDIGGGTGTFAARMRE----RNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP----FFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 281 LDIGcGtG~~a~~La~----~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp----f~d~sfDlV~~~~~L~~~~ 352 (430)
+=+|+ |.++..+++ .|..|+.+ |.++...+.++++..+.++.+|..... ..-..+|.|++. .
T Consensus 4 iIiG~--G~ig~~~a~~L~~~g~~v~vi--d~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~------~ 73 (453)
T PRK09496 4 IIVGA--GQVGYTLAENLSGENNDVTVI--DTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAV------T 73 (453)
T ss_pred EEECC--CHHHHHHHHHHHhCCCcEEEE--ECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEe------c
Confidence 44555 666666555 48888887 545555555554333567777764321 123468888873 1
Q ss_pred CchhHHHHHHHHHHhccCCcEEEE
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
++......+....|.+.|.-.++.
T Consensus 74 ~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 74 DSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred CChHHHHHHHHHHHHhcCCCeEEE
Confidence 222345556667777766655554
No 421
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=37.53 E-value=99 Score=31.79 Aligned_cols=85 Identities=25% Similarity=0.241 Sum_probs=45.0
Q ss_pred HHHHHHccCCC--CCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCCh--hHHHHHHhcCC---eeEEEccccc--C
Q 043503 264 GIDQVLSMKPL--GTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDG--PFNSFIASRGL---ISMHISVSQR--L 332 (430)
Q Consensus 264 ~id~lL~~~p~--~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~--~~le~a~~rg~---i~~~~~d~~~--l 332 (430)
.|++++..... +.+++++|||.|+--+-..+..+ +...+++++|-.. ..-+.+.++++ +.++....++ +
T Consensus 88 wI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll 167 (419)
T KOG2912|consen 88 WIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLL 167 (419)
T ss_pred HHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcc
Confidence 47777764433 34556899988877655544443 6666777555321 12233334444 3333331111 1
Q ss_pred C-----CCCCceeEEEEccch
Q 043503 333 P-----FFENTLDIVHSMHVL 348 (430)
Q Consensus 333 p-----f~d~sfDlV~~~~~L 348 (430)
+ -++..||.+.|+..+
T Consensus 168 ~d~~~~~~e~~ydFcMcNPPF 188 (419)
T KOG2912|consen 168 MDALKEESEIIYDFCMCNPPF 188 (419)
T ss_pred hhhhccCccceeeEEecCCch
Confidence 1 124569999997554
No 422
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=37.45 E-value=21 Score=38.38 Aligned_cols=89 Identities=19% Similarity=0.268 Sum_probs=58.5
Q ss_pred EEEEcCCccHHHHHHHHc--CC-EEEEEecCCChhHHHHHHhc----CC---eeEEEcccccC----CCCCCceeEEEEc
Q 043503 280 GLDIGGGTGTFAARMRER--NV-TIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRL----PFFENTLDIVHSM 345 (430)
Q Consensus 280 VLDIGcGtG~~a~~La~~--g~-~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~l----pf~d~sfDlV~~~ 345 (430)
|||.=|++|.-+++.+.. |+ .|++- |.++..++.+.++ +. +.....|+..+ +-.+..||+|..-
T Consensus 113 vLealsAtGlrslRya~El~~v~~v~An--D~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDLD 190 (525)
T KOG1253|consen 113 VLEALSATGLRSLRYAKELPGVRQVVAN--DLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDLD 190 (525)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhccc--CCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEecC
Confidence 489889999988888876 33 45555 4555555444332 32 44445554432 2346789999882
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.+ +....+|..+.+.++.||.+.++
T Consensus 191 -Py------Gs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 191 -PY------GSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred -CC------CCccHHHHHHHHHhhcCCEEEEE
Confidence 22 22456899999999999999875
No 423
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=37.12 E-value=1.3e+02 Score=30.11 Aligned_cols=107 Identities=17% Similarity=0.199 Sum_probs=61.9
Q ss_pred HHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHH---HHH
Q 043503 289 TFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLY---DIY 365 (430)
Q Consensus 289 ~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~---ei~ 365 (430)
.++..|.++|+.|++.|.+.... .+.+.+.|.... ....+ .-...|+|+++-. ++...+.++. .+.
T Consensus 14 pmA~~L~~aG~~v~v~~r~~~ka-~~~~~~~Ga~~a-~s~~e----aa~~aDvVitmv~-----~~~~V~~V~~g~~g~~ 82 (286)
T COG2084 14 PMAANLLKAGHEVTVYNRTPEKA-AELLAAAGATVA-ASPAE----AAAEADVVITMLP-----DDAAVRAVLFGENGLL 82 (286)
T ss_pred HHHHHHHHCCCEEEEEeCChhhh-hHHHHHcCCccc-CCHHH----HHHhCCEEEEecC-----CHHHHHHHHhCccchh
Confidence 45555556699999885443222 566666665211 11101 1245799998422 2223555663 466
Q ss_pred HhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEecc
Q 043503 366 RLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGM 408 (430)
Q Consensus 366 RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~~ 408 (430)
.-++||..++-.. ...+...+.+.+.++..|...+.-.+..
T Consensus 83 ~~~~~G~i~IDmS--Tisp~~a~~~a~~~~~~G~~~lDAPVsG 123 (286)
T COG2084 83 EGLKPGAIVIDMS--TISPETARELAAALAAKGLEFLDAPVSG 123 (286)
T ss_pred hcCCCCCEEEECC--CCCHHHHHHHHHHHHhcCCcEEecCccC
Confidence 7778888776543 2234455678889999998877655443
No 424
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=36.85 E-value=3.6e+02 Score=28.66 Aligned_cols=68 Identities=22% Similarity=0.197 Sum_probs=38.0
Q ss_pred CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 336 ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 336 d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
...||+|+.-..-... .+..+-..+..+.++++|.+.+++.+-. .+.+..+......+..+..-+-++
T Consensus 180 ~~~~DvVIIDTaGr~~-~d~~l~~eL~~i~~~~~p~e~lLVvda~-tgq~~~~~a~~f~~~v~i~giIlT 247 (428)
T TIGR00959 180 ENGFDVVIVDTAGRLQ-IDEELMEELAAIKEILNPDEILLVVDAM-TGQDAVNTAKTFNERLGLTGVVLT 247 (428)
T ss_pred hcCCCEEEEeCCCccc-cCHHHHHHHHHHHHhhCCceEEEEEecc-chHHHHHHHHHHHhhCCCCEEEEe
Confidence 4568988874333222 2334667788889999999988776533 222222222222334565544443
No 425
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=36.69 E-value=1.5e+02 Score=30.42 Aligned_cols=91 Identities=19% Similarity=0.153 Sum_probs=49.2
Q ss_pred EEEEEcCC-ccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEc-ccccCCCCCCceeEEEEccchhhcCCch
Q 043503 279 IGLDIGGG-TGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHIS-VSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 279 ~VLDIGcG-tG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~-d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
+||=.|+| .|.++..+++. |++|+.++.+. +...+.+++-|.-.++.. +.+.+.-..+.+|+|+-.-.
T Consensus 181 ~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~-~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G-------- 251 (375)
T PLN02178 181 RLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS-EKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVS-------- 251 (375)
T ss_pred EEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh-HHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCC--------
Confidence 34556664 35566666665 88888774321 222455555565222211 10111000124888887311
Q ss_pred hHHHHHHHHHHhccCCcEEEEeec
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
....+.+..+.+++||.++....
T Consensus 252 -~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 252 -AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred -cHHHHHHHHHhhcCCCEEEEEcc
Confidence 12356778889999999987554
No 426
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=36.61 E-value=3.2e+02 Score=26.11 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=48.0
Q ss_pred cEEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccC---CCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRL---PFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l---pf~d~sfDlV~~~~~L~~~ 351 (430)
..||-.|+ +.|..++.+++. |++|+.++- + ...+.+++.|.-.++......+ ....+.+|+|+....-
T Consensus 145 ~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~--~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~--- 218 (319)
T cd08267 145 QRVLINGASGGVGTFAVQIAKALGAHVTGVCS--T-RNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDAVGN--- 218 (319)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC--H-HHHHHHHHcCCCEeecCCCCCcchhccCCCCCcEEEECCCc---
Confidence 44588886 456677777766 888887742 2 4455665556422221111111 1234568999874221
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
. .......+. .++++|.++..
T Consensus 219 --~--~~~~~~~~~-~l~~~g~~i~~ 239 (319)
T cd08267 219 --S--PFSLYRASL-ALKPGGRYVSV 239 (319)
T ss_pred --h--HHHHHHhhh-ccCCCCEEEEe
Confidence 0 112222222 39999998764
No 427
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=36.57 E-value=2.1e+02 Score=28.01 Aligned_cols=101 Identities=11% Similarity=0.037 Sum_probs=52.9
Q ss_pred HHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHH---HHHH
Q 043503 289 TFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTL---YDIY 365 (430)
Q Consensus 289 ~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L---~ei~ 365 (430)
.++..+++.|.+|+.. |.++...+...+.|.. ...+.... -...|+|+..-. ++.....++ ..+.
T Consensus 10 ~mA~~L~~~G~~V~v~--dr~~~~~~~l~~~g~~--~~~s~~~~---~~~advVil~vp-----~~~~~~~v~~g~~~l~ 77 (288)
T TIGR01692 10 PMAANLLKAGHPVRVF--DLFPDAVEEAVAAGAQ--AAASPAEA---AEGADRVITMLP-----AGQHVISVYSGDEGIL 77 (288)
T ss_pred HHHHHHHhCCCeEEEE--eCCHHHHHHHHHcCCe--ecCCHHHH---HhcCCEEEEeCC-----ChHHHHHHHcCcchHh
Confidence 3555556668888887 5555555555555531 11111111 124588887411 112244555 4566
Q ss_pred HhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 366 RLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 366 RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
..+++|-.+ ++. ....+...+.+.+.+.+.|...+.
T Consensus 78 ~~~~~g~~v-id~-st~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 78 PKVAKGSLL-IDC-STIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred hcCCCCCEE-EEC-CCCCHHHHHHHHHHHHHcCCcEEE
Confidence 667776544 432 122233445677777778877655
No 428
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=36.39 E-value=5.4e+02 Score=27.14 Aligned_cols=132 Identities=12% Similarity=0.137 Sum_probs=66.6
Q ss_pred hhHHHHHHHccCC-CCCccEEEEEcCCccH-HHHHHHHc-CCEEEEEecCCC----------hhHH----HHHHhcCC-e
Q 043503 261 LDYGIDQVLSMKP-LGTIRIGLDIGGGTGT-FAARMRER-NVTIITTSLNLD----------GPFN----SFIASRGL-I 322 (430)
Q Consensus 261 ~~~~id~lL~~~p-~~~ir~VLDIGcGtG~-~a~~La~~-g~~Vv~vdiD~s----------~~~l----e~a~~rg~-i 322 (430)
.+.+++.++..+. ....++|+|.+-|+|. +...+.++ |++|+.+..+++ +..+ +.+++.+. +
T Consensus 149 ~~~Y~~~l~~~~~~~~~~kVvvD~~~G~~~~~~~~il~~lg~~v~~i~~~~d~~f~~~p~p~~~~l~~l~~~v~~~~adl 228 (449)
T PRK14321 149 KEEYIKAALEMIKLENSYTVVVDSGNGAGSILSPYLQRELGNKVISLNSHPSGFFVRELEPNAKSLSMLAKTVKVLKADV 228 (449)
T ss_pred HHHHHHHHHHhcCcCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEeCccCCCCCCCCCCCchhhHHHHHHHHHHCCCCE
Confidence 4445666655443 2567889999999985 45555554 888876532211 1112 22222222 2
Q ss_pred eEEE-cccccCCCCCCceeEEEEccchhhcCCchhHHHHHHH-HHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCE
Q 043503 323 SMHI-SVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYD-IYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFK 400 (430)
Q Consensus 323 ~~~~-~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~e-i~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk 400 (430)
.+.. +|+.++-+-|+. ..++..+.+..++.. +.+ -+++|.++.. ..+ ...+.+++++.|.+
T Consensus 229 Gia~DgD~DR~~vvd~~----------G~~~~~d~~~~l~a~~ll~-~~~~~~vV~~-v~s-----s~~i~~~a~~~g~~ 291 (449)
T PRK14321 229 GIAHDGDADRIGVVDDQ----------GNFVEYEVMLSLIAGYMLR-KFGKGKIVTT-VDA-----GFALDDYIRPLGGE 291 (449)
T ss_pred EEEecCCCceEEEECCC----------CCEeChHHHHHHHHHHHHH-hCCCCcEEEe-ccc-----cHHHHHHHHHcCCE
Confidence 2222 344444322111 122222122222222 222 1356776553 222 34567788899999
Q ss_pred EEEEEeccc
Q 043503 401 KLRWNVGMK 409 (430)
Q Consensus 401 ~l~~~~~~k 409 (430)
+++..++.+
T Consensus 292 v~~t~vG~~ 300 (449)
T PRK14321 292 VIRTRVGDV 300 (449)
T ss_pred EEEEecChH
Confidence 998877754
No 429
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.98 E-value=1.4e+02 Score=30.30 Aligned_cols=71 Identities=18% Similarity=0.130 Sum_probs=49.7
Q ss_pred cEEEEEcCCcc---HHHHHHHHcCCEEEEEecCCC--hhHHHHHHhcCCeeEEEcccccCC----------CCCCceeEE
Q 043503 278 RIGLDIGGGTG---TFAARMRERNVTIITTSLNLD--GPFNSFIASRGLISMHISVSQRLP----------FFENTLDIV 342 (430)
Q Consensus 278 r~VLDIGcGtG---~~a~~La~~g~~Vv~vdiD~s--~~~le~a~~rg~i~~~~~d~~~lp----------f~d~sfDlV 342 (430)
.+||=-|+|.| .++..++++|.+++..|++.. .+..+.+++.|.+..+..|..+.. -.-+..|++
T Consensus 39 ~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V~IL 118 (300)
T KOG1201|consen 39 EIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGDVDIL 118 (300)
T ss_pred CEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCCceEE
Confidence 46799999988 588889999999988887754 344555555577777776654422 123578999
Q ss_pred EEccch
Q 043503 343 HSMHVL 348 (430)
Q Consensus 343 ~~~~~L 348 (430)
+.+...
T Consensus 119 VNNAGI 124 (300)
T KOG1201|consen 119 VNNAGI 124 (300)
T ss_pred Eecccc
Confidence 986544
No 430
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=35.91 E-value=5.5e+02 Score=27.09 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=28.3
Q ss_pred hhHHHHHHHccC----CCCCccEEEEEcCCccH-HHHHHHHc-CCEEEEEe
Q 043503 261 LDYGIDQVLSMK----PLGTIRIGLDIGGGTGT-FAARMRER-NVTIITTS 305 (430)
Q Consensus 261 ~~~~id~lL~~~----p~~~ir~VLDIGcGtG~-~a~~La~~-g~~Vv~vd 305 (430)
.+.+++.++..+ .....++|+|.+-|+|. ++..+.++ |++|+.+.
T Consensus 156 ~~~Y~~~l~~~i~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~lG~~v~~i~ 206 (446)
T PRK14324 156 IGRYIVHIKNSFPKDLTLKGLRIVLDTANGAAYKVAPTVFSELGADVIVIN 206 (446)
T ss_pred HHHHHHHHHHhcCCccCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEC
Confidence 343455555433 22356889999999985 45555555 88887663
No 431
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=35.84 E-value=57 Score=34.90 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=41.5
Q ss_pred EEEc-CCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccch
Q 043503 281 LDIG-GGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 281 LDIG-cGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
+-|| .|-+.+|..|.++|++|.|.|+..++ +.+..++.|..-+..-+.+.+. + -|.|+.+..+
T Consensus 13 IGIgG~GMsglA~iL~~~G~~VsGSD~~~~~-~t~~L~~~G~~i~~gh~~~ni~--~--~~~VV~s~Ai 76 (459)
T COG0773 13 IGIGGIGMSGLAEILLNLGYKVSGSDLAESP-MTQRLEALGIEIFIGHDAENIL--D--ADVVVVSNAI 76 (459)
T ss_pred EeeccccHHHHHHHHHhCCCceECccccccH-HHHHHHHCCCeEeCCCCHHHcC--C--CceEEEeccc
Confidence 5552 35558888889999999999887766 7788888887444444555444 2 2335554554
No 432
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=35.84 E-value=4.7e+02 Score=27.85 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=35.3
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHH-HHcCCEEEEEE
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPML-DRIGFKKLRWN 405 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll-~~~Gfk~l~~~ 405 (430)
+.||+|+.--.-.+ ..+..+-.-+.++.++..|.=.+++.+-. .+....+ ..+.| +..++.-+-++
T Consensus 181 ~~~DvViIDTaGr~-~~d~~lm~El~~i~~~~~p~e~lLVlda~-~Gq~a~~-~a~~F~~~~~~~g~IlT 247 (429)
T TIGR01425 181 ENFDIIIVDTSGRH-KQEDSLFEEMLQVAEAIQPDNIIFVMDGS-IGQAAEA-QAKAFKDSVDVGSVIIT 247 (429)
T ss_pred CCCCEEEEECCCCC-cchHHHHHHHHHHhhhcCCcEEEEEeccc-cChhHHH-HHHHHHhccCCcEEEEE
Confidence 46999998444323 33434556677777788887665554422 1222222 33444 34566555444
No 433
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=35.04 E-value=82 Score=32.57 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=45.9
Q ss_pred EEEEEcCC-ccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc-CC-eeEEEcccccCCCCCCceeEEEEccchhhcCCc
Q 043503 279 IGLDIGGG-TGTFAARMRER-NVTIITTSLNLDGPFNSFIASR-GL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 279 ~VLDIGcG-tG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r-g~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d 354 (430)
.|+=+|+| .|..++..+.. |++|+.+|. ++...+.+... +. +.....+.+.+.-.-..+|+|+..-.... .+.
T Consensus 169 ~VlViGaG~vG~~aa~~a~~lGa~V~v~d~--~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g-~~~ 245 (370)
T TIGR00518 169 DVTIIGGGVVGTNAAKMANGLGATVTILDI--NIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPG-AKA 245 (370)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCeEEEEEC--CHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCC-CCC
Confidence 46888887 45566665555 888888844 44444444333 22 11111111111101135899998432200 100
Q ss_pred hhHHHHHHHHHHhccCCcEEE
Q 043503 355 SMLEFTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lv 375 (430)
...+-.++.+.++||+.++
T Consensus 246 --p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 246 --PKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred --CcCcCHHHHhcCCCCCEEE
Confidence 1112356667789998765
No 434
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=34.70 E-value=2.7e+02 Score=28.34 Aligned_cols=87 Identities=11% Similarity=0.036 Sum_probs=47.9
Q ss_pred EEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcc----------cccCCCCCCceeEEEEccc
Q 043503 281 LDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISV----------SQRLPFFENTLDIVHSMHV 347 (430)
Q Consensus 281 LDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d----------~~~lpf~d~sfDlV~~~~~ 347 (430)
|=.|+|. |..++.+++. |. +|+++ +.++...+.+.+-|.-.++... ..++ .....+|+|+....
T Consensus 208 lV~g~g~vG~~ai~lA~~~G~~~vi~~--~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~-~~g~gvDvvld~~g 284 (384)
T cd08265 208 VVYGAGPIGLAAIALAKAAGASKVIAF--EISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEV-TKGWGADIQVEAAG 284 (384)
T ss_pred EEECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHh-cCCCCCCEEEECCC
Confidence 4446532 3344444554 87 67777 4445555666666652222111 0111 12356899987411
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
. ....+.++.+.|+++|.++...
T Consensus 285 ------~--~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 285 ------A--PPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred ------C--cHHHHHHHHHHHHcCCEEEEEC
Confidence 1 1245778889999999998643
No 435
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=34.48 E-value=3.2e+02 Score=28.61 Aligned_cols=112 Identities=20% Similarity=0.109 Sum_probs=56.9
Q ss_pred EEEEcCCc--cHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEccccc----------CC--CCCCceeEEEEc
Q 043503 280 GLDIGGGT--GTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQR----------LP--FFENTLDIVHSM 345 (430)
Q Consensus 280 VLDIGcGt--G~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~----------lp--f~d~sfDlV~~~ 345 (430)
|-=||.|. +.++..++++|.+|+++|. ++...+.. .+|.+++...+.+. +. ......|+|+.+
T Consensus 6 I~VIGlG~~G~~~A~~La~~G~~V~~~D~--~~~~v~~l-~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 6 ISVIGLGYIGLPTAAAFASRQKQVIGVDI--NQHAVDTI-NRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred EEEECcchhhHHHHHHHHhCCCEEEEEeC--CHHHHHHH-HCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 34566664 3677778888999999955 45444432 23332222111100 00 011246888763
Q ss_pred cchhh---cCCc-hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHH
Q 043503 346 HVLSN---WIPD-SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDR 396 (430)
Q Consensus 346 ~~L~~---~~~d-~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~ 396 (430)
-.... -.++ ......+..+.+.+++|-.+++..-.. ....+.+...+.+
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~--pgtt~~~~~~l~~ 135 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP--VGATEQMAEWLAE 135 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC--CCHHHHHHHHHHH
Confidence 22100 0011 245667788899999987776643222 2233444444444
No 436
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=34.16 E-value=1.8e+02 Score=28.22 Aligned_cols=88 Identities=9% Similarity=0.008 Sum_probs=49.5
Q ss_pred EEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccchh
Q 043503 279 IGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L~ 349 (430)
+||=.|+ +.|..++.+++. |++++.+ .-+....+.+++.|.-.++......+. .....+|+|+..-.
T Consensus 142 ~vlI~g~~g~ig~~~~~~a~~~G~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g-- 217 (324)
T cd08292 142 WLIQNAAGGAVGKLVAMLAAARGINVINL--VRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSVG-- 217 (324)
T ss_pred EEEEcccccHHHHHHHHHHHHCCCeEEEE--ecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECCC--
Confidence 3455554 367777777776 8888766 223444455554554222222111110 12346899986311
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
. ..+.+..+.|+++|.++...
T Consensus 218 ----~----~~~~~~~~~l~~~g~~v~~g 238 (324)
T cd08292 218 ----G----KLAGELLSLLGEGGTLVSFG 238 (324)
T ss_pred ----C----hhHHHHHHhhcCCcEEEEEe
Confidence 1 13467889999999998654
No 437
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=34.15 E-value=3.6e+02 Score=27.90 Aligned_cols=110 Identities=16% Similarity=0.154 Sum_probs=60.2
Q ss_pred HccCCCCCccEEEEEcCCcc----HHHHHHHHc--C---CEEEEEecCC--ChhHH--------HHHHhcCC-eeEEEc-
Q 043503 269 LSMKPLGTIRIGLDIGGGTG----TFAARMRER--N---VTIITTSLNL--DGPFN--------SFIASRGL-ISMHIS- 327 (430)
Q Consensus 269 L~~~p~~~ir~VLDIGcGtG----~~a~~La~~--g---~~Vv~vdiD~--s~~~l--------e~a~~rg~-i~~~~~- 327 (430)
++...+.+--+|+|+|.|.| .+-..|+.+ | .++++++... +...+ ++|+.-|+ ..|...
T Consensus 103 leA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~ 182 (374)
T PF03514_consen 103 LEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVV 182 (374)
T ss_pred HHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecc
Confidence 34445544446799999999 466667776 2 4677774411 23222 44555566 444432
Q ss_pred --ccccCC-----CCCCceeEEEEccchhhcCCc----hhHHHHHHHHHHhccCCcEEEEee
Q 043503 328 --VSQRLP-----FFENTLDIVHSMHVLSNWIPD----SMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 328 --d~~~lp-----f~d~sfDlV~~~~~L~~~~~d----~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
..+.+. ..++..=+|-|...+++...+ ......+-...|.|+|.-.+++..
T Consensus 183 ~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E~ 244 (374)
T PF03514_consen 183 VESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVEQ 244 (374)
T ss_pred cCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEee
Confidence 233332 233444445566666654411 113445667778999997666543
No 438
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=33.83 E-value=1.6e+02 Score=30.09 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=57.1
Q ss_pred EEEEEcCCccHHHHHH--HHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchh
Q 043503 279 IGLDIGGGTGTFAARM--RERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~L--a~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
+|-=||||+-..+..+ .+.|..|+.- +-......+.|.+.|.--+-+.++- ..-|+|+. .+||+.
T Consensus 20 ~iaIIGYGsQG~ahalNLRDSGlnViiG-lr~g~~s~~kA~~dGf~V~~v~ea~------k~ADvim~------L~PDe~ 86 (338)
T COG0059 20 KVAIIGYGSQGHAQALNLRDSGLNVIIG-LRKGSSSWKKAKEDGFKVYTVEEAA------KRADVVMI------LLPDEQ 86 (338)
T ss_pred eEEEEecChHHHHHHhhhhhcCCcEEEE-ecCCchhHHHHHhcCCEeecHHHHh------hcCCEEEE------eCchhh
Confidence 3478999997655544 4558776532 3444445677888886322222222 34688876 267766
Q ss_pred HHHHHH-HHHHhccCCcEEEEeecc
Q 043503 357 LEFTLY-DIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 357 l~~~L~-ei~RvLrPGG~lvl~~f~ 380 (430)
...+.. ++.-.|+.|-.+.++|=|
T Consensus 87 q~~vy~~~I~p~Lk~G~aL~FaHGf 111 (338)
T COG0059 87 QKEVYEKEIAPNLKEGAALGFAHGF 111 (338)
T ss_pred HHHHHHHHhhhhhcCCceEEecccc
Confidence 666666 899999999999886643
No 439
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=33.76 E-value=85 Score=24.98 Aligned_cols=79 Identities=14% Similarity=0.125 Sum_probs=40.8
Q ss_pred CccHHHHHH----HHcC---CEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHH
Q 043503 286 GTGTFAARM----RERN---VTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLE 358 (430)
Q Consensus 286 GtG~~a~~L----a~~g---~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~ 358 (430)
|.|.++..+ .+.| .+|..+ .+.++...+..+++..+.+...+....- +..|+|+.. ++.....
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~advvila------v~p~~~~ 75 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIV-SSRSPEKAAELAKEYGVQATADDNEEAA---QEADVVILA------VKPQQLP 75 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEE-EESSHHHHHHHHHHCTTEEESEEHHHHH---HHTSEEEE-------S-GGGHH
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEee-ccCcHHHHHHHHHhhccccccCChHHhh---ccCCEEEEE------ECHHHHH
Confidence 445444444 4447 677733 1555655555544433333332222211 246888873 3333577
Q ss_pred HHHHHHHHhccCCcEEE
Q 043503 359 FTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 359 ~~L~ei~RvLrPGG~lv 375 (430)
.++.++ ..+.+|..++
T Consensus 76 ~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 76 EVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp HHHHHH-HHHHTTSEEE
T ss_pred HHHHHH-hhccCCCEEE
Confidence 888888 6666666543
No 440
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=33.61 E-value=1.3e+02 Score=31.30 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=29.6
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc----------CCEEEEEecCCChhHHH
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER----------NVTIITTSLNLDGPFNS 314 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~----------g~~Vv~vdiD~s~~~le 314 (430)
+-+++..+.......+++||.|+|.++.-|+.. ..++..+ ++|+...+
T Consensus 66 ~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~ii--E~s~~L~~ 123 (370)
T COG1565 66 FLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYII--EPSPELRA 123 (370)
T ss_pred HHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEE--ecCHHHHH
Confidence 344454433322234699999999998887754 2345555 77776543
No 441
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=33.51 E-value=3e+02 Score=27.01 Aligned_cols=88 Identities=19% Similarity=0.143 Sum_probs=49.0
Q ss_pred EEEEcCC-ccHHHHHHHHc-CCE-EEEEecCCChhHHHHHHhcCCeeEEEcccccC-----C-CCCCceeEEEEccchhh
Q 043503 280 GLDIGGG-TGTFAARMRER-NVT-IITTSLNLDGPFNSFIASRGLISMHISVSQRL-----P-FFENTLDIVHSMHVLSN 350 (430)
Q Consensus 280 VLDIGcG-tG~~a~~La~~-g~~-Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l-----p-f~d~sfDlV~~~~~L~~ 350 (430)
||=.|+| .|..++.+++. |.+ ++++ ..++...+.+.+.|.-.++......+ . .....+|+|+....-
T Consensus 169 VlV~g~g~vg~~~~~la~~~g~~~v~~~--~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~vd~vld~~~~-- 244 (343)
T cd08235 169 VLVIGAGPIGLLHAMLAKASGARKVIVS--DLNEFRLEFAKKLGADYTIDAAEEDLVEKVRELTDGRGADVVIVATGS-- 244 (343)
T ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEEecCCccCHHHHHHHHhCCcCCCEEEECCCC--
Confidence 3445764 56666666666 877 6655 44455555555545422222111110 0 123458998863111
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+..+.+.|+++|.++...
T Consensus 245 -------~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 245 -------PEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred -------hHHHHHHHHHhhcCCEEEEEe
Confidence 135677788999999988643
No 442
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=33.41 E-value=1.9e+02 Score=28.47 Aligned_cols=89 Identities=9% Similarity=0.035 Sum_probs=49.6
Q ss_pred EEEEEcCC-ccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC---CCCCceeEEEEccchhhcCC
Q 043503 279 IGLDIGGG-TGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP---FFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 279 ~VLDIGcG-tG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp---f~d~sfDlV~~~~~L~~~~~ 353 (430)
+||=.|+| .|..+..+++. |.+|+.+ +.++...+.+++-|.-.++...-..+. .....+|+|+....
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~G~~vi~~--~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g------ 237 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKMGFRTVAI--SRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAP------ 237 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEE--eCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCC------
Confidence 44666643 34555555555 8888877 444555677766664222211111110 00134788886311
Q ss_pred chhHHHHHHHHHHhccCCcEEEEee
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
-...+.++.+.|+++|.++...
T Consensus 238 ---~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 238 ---NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred ---chHHHHHHHHHcccCCEEEEEe
Confidence 1235778889999999988643
No 443
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=33.16 E-value=2.3e+02 Score=27.22 Aligned_cols=87 Identities=13% Similarity=0.028 Sum_probs=47.3
Q ss_pred EEEcC-CccHHHHHHHHc-CCE-EEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccchhhc
Q 043503 281 LDIGG-GTGTFAARMRER-NVT-IITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 281 LDIGc-GtG~~a~~La~~-g~~-Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L~~~ 351 (430)
|=.|+ +.|..++.+++. |++ ++.+ ...+...+.+.+-|...++......+. .....+|+++.....
T Consensus 134 lI~g~g~vg~~~~~la~~~g~~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~--- 208 (312)
T cd08269 134 AVIGAGFIGLLFLQLAAAAGARRVIAI--DRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGH--- 208 (312)
T ss_pred EEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCCC---
Confidence 44453 345555566665 887 7766 333444455554454222221111110 123468999873211
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+.++.+.|+++|.++...
T Consensus 209 ------~~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 209 ------QWPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred ------HHHHHHHHHHhccCCEEEEEc
Confidence 125677889999999988653
No 444
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=33.13 E-value=2.6e+02 Score=27.24 Aligned_cols=87 Identities=16% Similarity=0.157 Sum_probs=48.6
Q ss_pred EEEEcCCcc--HHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcc---------cccCCCCCCceeEEEEccch
Q 043503 280 GLDIGGGTG--TFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISV---------SQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 280 VLDIGcGtG--~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d---------~~~lpf~d~sfDlV~~~~~L 348 (430)
|+=+|+|.- .++..|++.|..|+.++ . +...+..++.|. .+...+ .....-....+|+|+..
T Consensus 3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~--r-~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~vila--- 75 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEAGRDVTFLV--R-PKRAKALRERGL-VIRSDHGDAVVPGPVITDPEELTGPFDLVILA--- 75 (305)
T ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEe--c-HHHHHHHHhCCe-EEEeCCCeEEecceeecCHHHccCCCCEEEEE---
Confidence 355777763 46777777788888773 3 344455555553 111111 00100012568987763
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
++....+.++.++...+.++..++.
T Consensus 76 ---vk~~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 76 ---VKAYQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred ---ecccCHHHHHHHHHhhcCCCCEEEE
Confidence 1111367788888888888776554
No 445
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.70 E-value=1.6e+02 Score=28.74 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=41.6
Q ss_pred cEEEEEcCCccHHHHHHH----HcCCEEEEEecCCChhHHHHHHhcCCeeEEEccccc-----------CCCCCCceeEE
Q 043503 278 RIGLDIGGGTGTFAARMR----ERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQR-----------LPFFENTLDIV 342 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La----~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~-----------lpf~d~sfDlV 342 (430)
+.||=.||..|.++-.++ +.|+.|+++.= --++|.+.+.+-|+... ..|.++ ..+++++.|+.
T Consensus 8 k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR-~~e~M~~L~~~~gl~~~-kLDV~~~~~V~~v~~evr~~~~Gkld~L 85 (289)
T KOG1209|consen 8 KKVLITGCSSGGIGYALAKEFARNGYLVYATAR-RLEPMAQLAIQFGLKPY-KLDVSKPEEVVTVSGEVRANPDGKLDLL 85 (289)
T ss_pred CeEEEeecCCcchhHHHHHHHHhCCeEEEEEcc-ccchHhhHHHhhCCeeE-EeccCChHHHHHHHHHHhhCCCCceEEE
Confidence 457999999997665555 44999998732 22567777766665322 222211 12567888888
Q ss_pred EEc
Q 043503 343 HSM 345 (430)
Q Consensus 343 ~~~ 345 (430)
+.+
T Consensus 86 ~NN 88 (289)
T KOG1209|consen 86 YNN 88 (289)
T ss_pred EcC
Confidence 764
No 446
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=32.69 E-value=2.4e+02 Score=27.83 Aligned_cols=111 Identities=13% Similarity=0.224 Sum_probs=57.7
Q ss_pred EEEcCCc--cHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCc-hhH
Q 043503 281 LDIGGGT--GTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPD-SML 357 (430)
Q Consensus 281 LDIGcGt--G~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d-~~l 357 (430)
-=||+|. +.++..+++.|.+|+.. |.++...+...+.|.. ...+.... -...|+|+.+ +++ ...
T Consensus 5 g~IGlG~mG~~mA~~l~~~G~~V~v~--d~~~~~~~~~~~~g~~--~~~s~~~~---~~~aDvVi~~------vp~~~~~ 71 (296)
T PRK15461 5 AFIGLGQMGSPMASNLLKQGHQLQVF--DVNPQAVDALVDKGAT--PAASPAQA---AAGAEFVITM------LPNGDLV 71 (296)
T ss_pred EEEeeCHHHHHHHHHHHHCCCeEEEE--cCCHHHHHHHHHcCCc--ccCCHHHH---HhcCCEEEEe------cCCHHHH
Confidence 3356665 45667777778888887 5555555555555431 11111111 1245888873 222 123
Q ss_pred HHHHH---HHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEe
Q 043503 358 EFTLY---DIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 358 ~~~L~---ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
+.++. .+...+++|- ++++. ....+...+.+.+.+.+.|+..+.-.+
T Consensus 72 ~~vl~~~~~i~~~l~~g~-lvid~-sT~~p~~~~~l~~~l~~~g~~~ldapV 121 (296)
T PRK15461 72 RSVLFGENGVCEGLSRDA-LVIDM-STIHPLQTDKLIADMQAKGFSMMDVPV 121 (296)
T ss_pred HHHHcCcccHhhcCCCCC-EEEEC-CCCCHHHHHHHHHHHHHcCCcEEEccC
Confidence 34443 2344456654 44432 112233445677778888888665443
No 447
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=32.57 E-value=4.1e+02 Score=25.51 Aligned_cols=87 Identities=15% Similarity=0.126 Sum_probs=50.8
Q ss_pred EEEEc--CCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEccc----ccCC--CCCCceeEEEEccchhh
Q 043503 280 GLDIG--GGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVS----QRLP--FFENTLDIVHSMHVLSN 350 (430)
Q Consensus 280 VLDIG--cGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~----~~lp--f~d~sfDlV~~~~~L~~ 350 (430)
||=.| .+.|..+..+++. |.+|+.+ +.++...+.+++.|.-.++...- +.+- .....+|+|+....
T Consensus 146 vlI~g~~~~~g~~~~~la~~~g~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g--- 220 (324)
T cd08244 146 VLVTAAAGGLGSLLVQLAKAAGATVVGA--AGGPAKTALVRALGADVAVDYTRPDWPDQVREALGGGGVTVVLDGVG--- 220 (324)
T ss_pred EEEEcCCchHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHcCCCCceEEEECCC---
Confidence 45555 4566677777766 8898877 44455566666555422222111 1110 12346999987421
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
. ....++.+.|+++|.++...
T Consensus 221 ---~----~~~~~~~~~l~~~g~~v~~g 241 (324)
T cd08244 221 ---G----AIGRAALALLAPGGRFLTYG 241 (324)
T ss_pred ---h----HhHHHHHHHhccCcEEEEEe
Confidence 1 13477889999999988643
No 448
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=32.46 E-value=3.2e+02 Score=25.75 Aligned_cols=86 Identities=22% Similarity=0.227 Sum_probs=47.8
Q ss_pred EEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccC--CCCCCceeEEEEccchhhcCC
Q 043503 279 IGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRL--PFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 279 ~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l--pf~d~sfDlV~~~~~L~~~~~ 353 (430)
.+|=.|+ +.|..++.+++. |.+++.++. +. ..+.+.+.|.-.++......+ ....+.+|+++... .
T Consensus 147 ~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~--~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~~------~ 217 (309)
T cd05289 147 TVLIHGAAGGVGSFAVQLAKARGARVIATAS--AA-NADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTV------G 217 (309)
T ss_pred EEEEecCCchHHHHHHHHHHHcCCEEEEEec--ch-hHHHHHHcCCCEEEeCCCCchhhccCCCCceEEEECC------c
Confidence 3465664 455566666655 888877632 23 455555555422222211111 12345689888631 1
Q ss_pred chhHHHHHHHHHHhccCCcEEEEe
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
. ..+..+.+.++++|.++..
T Consensus 218 ~----~~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 218 G----ETLARSLALVKPGGRLVSI 237 (309)
T ss_pred h----HHHHHHHHHHhcCcEEEEE
Confidence 1 1466778899999998754
No 449
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=32.44 E-value=2.1e+02 Score=27.51 Aligned_cols=88 Identities=17% Similarity=0.029 Sum_probs=48.0
Q ss_pred EEEEEcCC--ccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEccccc----CC--CCCCceeEEEEccchh
Q 043503 279 IGLDIGGG--TGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQR----LP--FFENTLDIVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIGcG--tG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~----lp--f~d~sfDlV~~~~~L~ 349 (430)
.+|=.|++ .|..++.++.. |.+++.+ +.++...+.+...+.-..+...... +. .....+|+++....-
T Consensus 169 ~vlI~g~~~~iG~~~~~~~~~~g~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~g~- 245 (342)
T cd08266 169 TVLVHGAGSGVGSAAIQIAKLFGATVIAT--AGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVVEHVGA- 245 (342)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEECCcH-
Confidence 45766764 55666666554 8888877 4444445555444431111111000 00 123468988874221
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
..+.++.+.++++|.++...
T Consensus 246 ---------~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 246 ---------ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred ---------HHHHHHHHHhhcCCEEEEEe
Confidence 23556778899999987643
No 450
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=32.33 E-value=4.8e+02 Score=27.70 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHH-cCCEE
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDR-IGFKK 401 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~-~Gfk~ 401 (430)
......+.+.++|++|-.+++..-. ......+....+++. .|++.
T Consensus 106 ~v~~aa~sIa~~L~kG~LVIlEST~-~PGTTe~v~~plle~~sgL~~ 151 (436)
T COG0677 106 YVESAARSIAPVLKKGDLVILESTT-PPGTTEEVVKPLLEERSGLKF 151 (436)
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCC-CCCcHHHHHHHHHhhcCCCcc
Confidence 4566788899999999888875433 233344566677776 55554
No 451
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=32.18 E-value=2.6e+02 Score=27.27 Aligned_cols=82 Identities=13% Similarity=0.057 Sum_probs=47.9
Q ss_pred CCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccchhhcCCchhH
Q 043503 285 GGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVLSNWIPDSML 357 (430)
Q Consensus 285 cGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L~~~~~d~~l 357 (430)
.+.|..+..+++. |++++++ +.++...+.+++-|.-.++......+. ...+.+|+|+.. ..
T Consensus 151 g~ig~~~~~lak~~G~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~--~~-------- 218 (327)
T PRK10754 151 GGVGLIACQWAKALGAKLIGT--VGSAQKAQRAKKAGAWQVINYREENIVERVKEITGGKKVRVVYDS--VG-------- 218 (327)
T ss_pred cHHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHCCCCEEEcCCCCcHHHHHHHHcCCCCeEEEEEC--Cc--------
Confidence 4566677777766 8998877 444555666665564222222111110 123468888752 11
Q ss_pred HHHHHHHHHhccCCcEEEEee
Q 043503 358 EFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 358 ~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+.++.+.++++|.++...
T Consensus 219 ~~~~~~~~~~l~~~g~~v~~g 239 (327)
T PRK10754 219 KDTWEASLDCLQRRGLMVSFG 239 (327)
T ss_pred HHHHHHHHHHhccCCEEEEEc
Confidence 124567788999999988643
No 452
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=31.87 E-value=3e+02 Score=26.56 Aligned_cols=88 Identities=19% Similarity=0.143 Sum_probs=52.3
Q ss_pred EEEEc--CCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEccccc-CC------CCCCceeEEEEccchh
Q 043503 280 GLDIG--GGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQR-LP------FFENTLDIVHSMHVLS 349 (430)
Q Consensus 280 VLDIG--cGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~-lp------f~d~sfDlV~~~~~L~ 349 (430)
||=.| .+.|..++.+++. |.+++.+ ..++...+.+.+.|.-.++...... +. .....+|+++....
T Consensus 144 vlI~ga~g~~g~~~~~~a~~~g~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~-- 219 (334)
T PTZ00354 144 VLIHAGASGVGTAAAQLAEKYGAATIIT--TSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVG-- 219 (334)
T ss_pred EEEEcCCchHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCCceEEEECCc--
Confidence 45555 4677777777766 8887655 4446666666655652222211100 00 12456899987321
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
...+..+.+.|+++|.++...+
T Consensus 220 --------~~~~~~~~~~l~~~g~~i~~~~ 241 (334)
T PTZ00354 220 --------GSYLSETAEVLAVDGKWIVYGF 241 (334)
T ss_pred --------hHHHHHHHHHhccCCeEEEEec
Confidence 1356778889999999987553
No 453
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=31.46 E-value=3.7e+02 Score=26.00 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=49.3
Q ss_pred EEEEcCCcc--HHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcc-------cccCCCCCCceeEEEEccchhh
Q 043503 280 GLDIGGGTG--TFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISV-------SQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 280 VLDIGcGtG--~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d-------~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
|.=+|+|.- .++..|++.|.+|+.++- +....+...+.|. .+..++ ..... ....+|+|+..-
T Consensus 3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r--~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~-~~~~~d~vila~---- 74 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQAGHDVTLVAR--RGAHLDALNENGL-RLEDGEITVPVLAADDPA-ELGPQDLVILAV---- 74 (304)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEEC--ChHHHHHHHHcCC-cccCCceeecccCCCChh-HcCCCCEEEEec----
Confidence 356777652 466777777888887743 3444555555554 110010 01111 125689988741
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
+......++..+...+.++..+++
T Consensus 75 --k~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 75 --KAYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred --ccccHHHHHHHHhhhcCCCCEEEE
Confidence 111267788888888887766654
No 454
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=31.37 E-value=4.2e+02 Score=25.25 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=52.0
Q ss_pred cEEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCc
Q 043503 278 RIGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 278 r~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d 354 (430)
..+|=.|+ +.|..++.+++. |.+++.+ +.++...+.+++.|.-..+ ...+.+ .++.+|+|+.. . ..
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~g~~v~~~--~~~~~~~~~~~~~g~~~~~-~~~~~~--~~~~~d~vl~~--~----g~ 202 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALAGAHVVAV--VGSPARAEGLRELGAAEVV-VGGSEL--SGAPVDLVVDS--V----GG 202 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHcCCcEEE-eccccc--cCCCceEEEEC--C----Cc
Confidence 34466665 556666666665 8888877 3445556677665642221 111222 23468999863 1 11
Q ss_pred hhHHHHHHHHHHhccCCcEEEEee
Q 043503 355 SMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
..+.+..+.|+++|.++...
T Consensus 203 ----~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 203 ----PQLARALELLAPGGTVVSVG 222 (305)
T ss_pred ----HHHHHHHHHhcCCCEEEEEe
Confidence 24678899999999988654
No 455
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=31.35 E-value=3.7e+02 Score=27.51 Aligned_cols=106 Identities=14% Similarity=0.071 Sum_probs=58.7
Q ss_pred EEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCC-eeEEEcccccCCCCCCceeEEEEccchhhcCCchhHH
Q 043503 280 GLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLE 358 (430)
Q Consensus 280 VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~ 358 (430)
||=+|--...+...+....+++.+. +.+. ........+. +.|- .++.. + ....||+|+....= .....+
T Consensus 23 ~l~~~~~~d~~~~~l~~~~~~~~~~--~~~~-~~~~~~~~~~~~~f~-~~~~~-~-~~~~~d~~~~~~pk----~k~~~~ 92 (342)
T PRK09489 23 VLFAGDLQDDLPAQLDAASVRVHTQ--QFHH-WQVLSRQMGDNARFS-LVATA-E-DVADCDTLIYYWPK----NKQEAQ 92 (342)
T ss_pred EEEEcCcchhhHHhhhccceEEehh--hhHH-HHHHHhhcCCceEec-cccCC-c-cCCCCCEEEEECCC----CHHHHH
Confidence 4888887788887776334445543 3222 1122222232 2221 11111 1 12579998883221 123467
Q ss_pred HHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcC
Q 043503 359 FTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIG 398 (430)
Q Consensus 359 ~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~G 398 (430)
..|..+.+.|+|||.+++..--. ...+.+.++++..+
T Consensus 93 ~~l~~~~~~l~~g~~i~~~G~~~---~g~~s~~k~~~~~~ 129 (342)
T PRK09489 93 FQLMNLLSLLPVGTDIFVVGENR---SGVRSAEKMLADYA 129 (342)
T ss_pred HHHHHHHHhCCCCCEEEEEEecc---ccHHHHHHHHHHhc
Confidence 78999999999999999975332 23455566665543
No 456
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=31.34 E-value=1.2e+02 Score=32.65 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=46.3
Q ss_pred cEEEEEcCCc-cH-HHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCch
Q 043503 278 RIGLDIGGGT-GT-FAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 278 r~VLDIGcGt-G~-~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
++|+=+|+|. |. .+..+...|.+|+.++.|... ...+...|. . ..+.+.+ -...|+|++.-.-.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~--a~~A~~~G~-~--~~~leel---l~~ADIVI~atGt~------ 320 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPIC--ALQAAMEGY-Q--VVTLEDV---VETADIFVTATGNK------ 320 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh--HHHHHhcCc-e--eccHHHH---HhcCCEEEECCCcc------
Confidence 4567788775 32 222333338999888665432 222333342 1 1122221 13579998842211
Q ss_pred hHHHHH-HHHHHhccCCcEEEEeec
Q 043503 356 MLEFTL-YDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 356 ~l~~~L-~ei~RvLrPGG~lvl~~f 379 (430)
.++ .+....+|||++++-...
T Consensus 321 ---~iI~~e~~~~MKpGAiLINvGr 342 (476)
T PTZ00075 321 ---DIITLEHMRRMKNNAIVGNIGH 342 (476)
T ss_pred ---cccCHHHHhccCCCcEEEEcCC
Confidence 233 378888999999886543
No 457
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=31.29 E-value=4.4e+02 Score=25.38 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=42.8
Q ss_pred cEEEEEcCCccHHH--HHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFA--ARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a--~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~ 345 (430)
+.||=||+|.-..- ..|.+.|++|+.+.+++++.+.+.+ +.|.+.++....+.-.+ ..+++|++.
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~-~~~~i~~~~r~~~~~dl--~g~~LViaA 92 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLK-KYGNLKLIKGNYDKEFI--KDKHLIVIA 92 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHH-hCCCEEEEeCCCChHHh--CCCcEEEEC
Confidence 45699999887643 3344558999888888888776654 45667777655433222 246778773
No 458
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=31.21 E-value=2.9e+02 Score=26.75 Aligned_cols=90 Identities=13% Similarity=0.137 Sum_probs=52.6
Q ss_pred EEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcc---cccC-CCCCCceeEEEEccchhhc
Q 043503 279 IGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISV---SQRL-PFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 279 ~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d---~~~l-pf~d~sfDlV~~~~~L~~~ 351 (430)
+||=.|+ +.|..+..+++. |.+|+.+ +.++...+.+++-|.-.++... .+.+ .+....+|+|+....
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~--~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g---- 222 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKLGYEVVAS--TGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVG---- 222 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCeEEEE--ecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCc----
Confidence 4466664 556666767765 8888876 4445556666665642222111 0100 112345888876311
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
...+.+..+.|+++|.++.....
T Consensus 223 ------~~~~~~~~~~l~~~G~~i~~g~~ 245 (326)
T cd08289 223 ------GKTLAYLLSTLQYGGSVAVSGLT 245 (326)
T ss_pred ------HHHHHHHHHHhhcCCEEEEEeec
Confidence 12467888999999999876543
No 459
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=31.20 E-value=2.4e+02 Score=27.74 Aligned_cols=89 Identities=13% Similarity=0.087 Sum_probs=51.0
Q ss_pred EEEEEcCC--ccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEccccc----CC--CCCCceeEEEEccchh
Q 043503 279 IGLDIGGG--TGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQR----LP--FFENTLDIVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIGcG--tG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~----lp--f~d~sfDlV~~~~~L~ 349 (430)
++|=.|+| .|..++.+++. |.+|+.+ ..++...+.+.+-|.-.++...... +. ...+.+|+|+....-
T Consensus 168 ~vlV~g~~~~vg~~~~~~a~~~g~~v~~~--~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vd~vl~~~~~- 244 (341)
T cd08297 168 WVVISGAGGGLGHLGVQYAKAMGLRVIAI--DVGDEKLELAKELGADAFVDFKKSDDVEAVKELTGGGGAHAVVVTAVS- 244 (341)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEE--eCCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHhcCCCCCEEEEcCCc-
Confidence 44666654 67777777776 8888877 3344445555544532222111101 10 123568988852111
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+.++.+.++++|.++...
T Consensus 245 --------~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 245 --------AAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred --------hHHHHHHHHHhhcCCEEEEec
Confidence 235677889999999998653
No 460
>PRK14974 cell division protein FtsY; Provisional
Probab=30.80 E-value=6e+02 Score=26.01 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=36.3
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
..+|+|+.-..- ....+..+-.-|..+.++++|...+++.+-. .+.+..+.........++..+-++
T Consensus 221 ~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~-~g~d~~~~a~~f~~~~~~~giIlT 287 (336)
T PRK14974 221 RGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDAL-AGNDAVEQAREFNEAVGIDGVILT 287 (336)
T ss_pred CCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccc-cchhHHHHHHHHHhcCCCCEEEEe
Confidence 458988874332 2222333555678888899999877665433 222222333333334666655444
No 461
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=30.60 E-value=3.5e+02 Score=26.20 Aligned_cols=89 Identities=12% Similarity=0.111 Sum_probs=50.9
Q ss_pred cEEEEEc--CCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHh-cCCeeEEEcccccC----C-CCCCceeEEEEccch
Q 043503 278 RIGLDIG--GGTGTFAARMRER-NVTIITTSLNLDGPFNSFIAS-RGLISMHISVSQRL----P-FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIG--cGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~-rg~i~~~~~d~~~l----p-f~d~sfDlV~~~~~L 348 (430)
.+||=.| .+.|..++.+++. |.+++.+ +.++...+.+++ .|.-.++......+ . ...+.+|+|+.. .
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~vi~~--~ 222 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLLGARVVGI--AGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDN--V 222 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceEEEEc--c
Confidence 3456666 3456666667666 8888877 434545566655 45422222211110 0 112468988863 1
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
. ...+.+..+.|+++|.++...
T Consensus 223 g--------~~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 223 G--------GEILDAALTLLNKGGRIALCG 244 (329)
T ss_pred h--------HHHHHHHHHhcCCCceEEEEe
Confidence 1 125778889999999987654
No 462
>PRK10537 voltage-gated potassium channel; Provisional
Probab=30.51 E-value=4.2e+02 Score=27.69 Aligned_cols=100 Identities=6% Similarity=-0.084 Sum_probs=56.4
Q ss_pred CCccHHHHHHHH----cCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC----CCCCceeEEEEccchhhcCCchh
Q 043503 285 GGTGTFAARMRE----RNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP----FFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 285 cGtG~~a~~La~----~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp----f~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
||.|.++..+++ +|..++.+|.| . .+...+++ ..++.+|..+.. ..-+..+.|++. .+++.
T Consensus 246 ~G~g~lg~~v~~~L~~~g~~vvVId~d--~--~~~~~~~g-~~vI~GD~td~e~L~~AgI~~A~aVI~~------t~dD~ 314 (393)
T PRK10537 246 CGHSPLAINTYLGLRQRGQAVTVIVPL--G--LEHRLPDD-ADLIPGDSSDSAVLKKAGAARARAILAL------RDNDA 314 (393)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECc--h--hhhhccCC-CcEEEeCCCCHHHHHhcCcccCCEEEEc------CCChH
Confidence 566666655544 47777777544 1 23333334 467788765422 122356677662 22223
Q ss_pred HHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEE
Q 043503 357 LEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 357 l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
.....-...|-+.|..+++..- . .++..+.++++|-..+
T Consensus 315 ~Nl~ivL~ar~l~p~~kIIa~v---~----~~~~~~~L~~~GaD~V 353 (393)
T PRK10537 315 DNAFVVLAAKEMSSDVKTVAAV---N----DSKNLEKIKRVHPDMI 353 (393)
T ss_pred HHHHHHHHHHHhCCCCcEEEEE---C----CHHHHHHHHhcCCCEE
Confidence 4455666788899988877631 1 1345566778886543
No 463
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=30.33 E-value=3.9e+02 Score=26.60 Aligned_cols=107 Identities=16% Similarity=0.108 Sum_probs=55.0
Q ss_pred cEEEEEcCCcc-H-HHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCch
Q 043503 278 RIGLDIGGGTG-T-FAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 278 r~VLDIGcGtG-~-~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
++++=+|.|.- . .+..+...|.+|+.+ |.++...+.+...|. .+. ....+.-.-..+|+|+..- +.
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~--~r~~~~~~~~~~~G~-~~~--~~~~l~~~l~~aDiVI~t~------p~- 220 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVG--ARKSAHLARITEMGL-SPF--HLSELAEEVGKIDIIFNTI------PA- 220 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEE--ECCHHHHHHHHHcCC-eee--cHHHHHHHhCCCCEEEECC------Ch-
Confidence 56688888753 2 223333348888888 444544555555553 221 1111111124689999842 11
Q ss_pred hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
..+-.++.+.++||+.++-.- ...+.... +..++.|-+.+.
T Consensus 221 --~~i~~~~l~~~~~g~vIIDla-~~pggtd~----~~a~~~Gv~~~~ 261 (296)
T PRK08306 221 --LVLTKEVLSKMPPEALIIDLA-SKPGGTDF----EYAEKRGIKALL 261 (296)
T ss_pred --hhhhHHHHHcCCCCcEEEEEc-cCCCCcCe----eehhhCCeEEEE
Confidence 112356677789988665322 21222111 245677777653
No 464
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=30.25 E-value=2.2e+02 Score=28.10 Aligned_cols=89 Identities=12% Similarity=0.022 Sum_probs=50.3
Q ss_pred EEEEEcC-CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEccc-ccCC-----CCCCceeEEEEccchhh
Q 043503 279 IGLDIGG-GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVS-QRLP-----FFENTLDIVHSMHVLSN 350 (430)
Q Consensus 279 ~VLDIGc-GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~-~~lp-----f~d~sfDlV~~~~~L~~ 350 (430)
+||=.|+ +.|..+..+++. |.+|+.+ +.++...+.+.+.|.-.++.... ..+. +..+.+|+|+..-.
T Consensus 168 ~vlV~g~g~vg~~~~~~a~~~G~~vi~~--~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g--- 242 (345)
T cd08260 168 WVAVHGCGGVGLSAVMIASALGARVIAV--DIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALG--- 242 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEE--eCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcCC---
Confidence 3355554 345555666665 8888877 44455566666556523332211 1111 11226899887311
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
. ...+....+.|+++|.++...
T Consensus 243 ---~---~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 243 ---I---PETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred ---C---HHHHHHHHHHhhcCCEEEEeC
Confidence 0 235678889999999987644
No 465
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=29.99 E-value=3e+02 Score=26.85 Aligned_cols=107 Identities=13% Similarity=0.229 Sum_probs=53.7
Q ss_pred EcCCc--cHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHH
Q 043503 283 IGGGT--GTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFT 360 (430)
Q Consensus 283 IGcGt--G~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~ 360 (430)
||+|. ..++..+++.|.+|++. |.++...+.+.+.|... ..+.... -...|+|+..-.- .......
T Consensus 5 IG~G~mG~~iA~~l~~~G~~V~~~--dr~~~~~~~~~~~g~~~--~~~~~~~---~~~aDivi~~vp~-----~~~~~~v 72 (291)
T TIGR01505 5 IGLGIMGSPMSINLAKAGYQLHVT--TIGPEVADELLAAGAVT--AETARQV---TEQADVIFTMVPD-----SPQVEEV 72 (291)
T ss_pred EEecHHHHHHHHHHHHCCCeEEEE--cCCHHHHHHHHHCCCcc--cCCHHHH---HhcCCEEEEecCC-----HHHHHHH
Confidence 45554 24666667779999887 55565555555555421 1111111 1346888884211 1113333
Q ss_pred H---HHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 361 L---YDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 361 L---~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
+ ..+...++||-.+ ++. ........+.+.+.+++.|...+.
T Consensus 73 ~~~~~~~~~~~~~g~ii-vd~-st~~~~~~~~l~~~l~~~g~~~~~ 116 (291)
T TIGR01505 73 AFGENGIIEGAKPGKTL-VDM-SSISPIESKRFAKAVKEKGIDYLD 116 (291)
T ss_pred HcCcchHhhcCCCCCEE-EEC-CCCCHHHHHHHHHHHHHcCCCEEe
Confidence 3 2345566776544 431 111122334566677777766554
No 466
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=29.96 E-value=4.1e+02 Score=26.05 Aligned_cols=86 Identities=21% Similarity=0.288 Sum_probs=50.3
Q ss_pred EEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEccccc----CC-CCCCceeEEEEccchhh
Q 043503 279 IGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQR----LP-FFENTLDIVHSMHVLSN 350 (430)
Q Consensus 279 ~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~----lp-f~d~sfDlV~~~~~L~~ 350 (430)
+||=.|+ +.|..++.+++. |++++.++ + +. ..+.+++.|. ..+...... .. .....+|+|+..-.
T Consensus 180 ~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~-~-~~-~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g--- 252 (350)
T cd08274 180 TVLVTGASGGVGSALVQLAKRRGAIVIAVA-G-AA-KEEAVRALGA-DTVILRDAPLLADAKALGGEPVDVVADVVG--- 252 (350)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEe-C-ch-hhHHHHhcCC-eEEEeCCCccHHHHHhhCCCCCcEEEecCC---
Confidence 4466775 556666666665 88888774 2 23 5566665564 222211111 11 13456899987311
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+.++.+.|+++|.++...
T Consensus 253 -------~~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 253 -------GPLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred -------HHHHHHHHHHhccCCEEEEec
Confidence 124677889999999987543
No 467
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=29.86 E-value=48 Score=31.61 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=28.8
Q ss_pred HHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCC
Q 043503 264 GIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNL 308 (430)
Q Consensus 264 ~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~ 308 (430)
.++.++..+|.....+++|.=||+|..+..+...+.+|+.-|++.
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~ 52 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINP 52 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-H
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechH
Confidence 355566666643556789999999999998887888888886653
No 468
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=29.75 E-value=1.5e+02 Score=24.38 Aligned_cols=51 Identities=16% Similarity=0.258 Sum_probs=28.2
Q ss_pred HHHHHhcCC-eeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCc
Q 043503 313 NSFIASRGL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGG 372 (430)
Q Consensus 313 le~a~~rg~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG 372 (430)
.+.++++|. +.+...+.....-....+|+|++. |+ ....+.++.+...+.+
T Consensus 20 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~-------Pq--v~~~~~~i~~~~~~~~ 71 (96)
T cd05564 20 KKAAEKRGIDAEIEAVPESELEEYIDDADVVLLG-------PQ--VRYMLDEVKKKAAEYG 71 (96)
T ss_pred HHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEC-------hh--HHHHHHHHHHHhccCC
Confidence 455566665 455555544443223568999984 22 4455667776544433
No 469
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=29.74 E-value=2.8e+02 Score=26.66 Aligned_cols=78 Identities=10% Similarity=0.016 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEE--cc-------cccCCCCCCceeEEEEccchhhcCCchhHHH
Q 043503 289 TFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHI--SV-------SQRLPFFENTLDIVHSMHVLSNWIPDSMLEF 359 (430)
Q Consensus 289 ~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~--~d-------~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~ 359 (430)
.++..|++.|.+|+.++ -+ ...+..++.|. .+.. ++ ...-+-....+|+|+.. ++......
T Consensus 5 ~~a~~L~~~G~~V~l~~--r~-~~~~~i~~~Gl-~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~------vKs~~~~~ 74 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLA--RG-EQLEALNQEGL-RIVSLGGEFQFRPVSAATSPEELPPADLVIIT------VKAYQTEE 74 (293)
T ss_pred HHHHHHHhCCCcEEEEe--cH-HHHHHHHHCCc-EEEecCCcEEEcccccccChhhcCCCCEEEEe------ccchhHHH
Confidence 57777888788888773 32 33455555564 1111 11 00001112468988873 11113677
Q ss_pred HHHHHHHhccCCcEEEE
Q 043503 360 TLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 360 ~L~ei~RvLrPGG~lvl 376 (430)
++..+...+.++..+++
T Consensus 75 ~l~~l~~~l~~~~~iv~ 91 (293)
T TIGR00745 75 AAALLLPLIGKNTKVLF 91 (293)
T ss_pred HHHHhHhhcCCCCEEEE
Confidence 88889999999887765
No 470
>PLN02688 pyrroline-5-carboxylate reductase
Probab=29.72 E-value=2.9e+02 Score=26.43 Aligned_cols=83 Identities=16% Similarity=0.164 Sum_probs=43.5
Q ss_pred EEEcCCc--cHHHHHHHHcCC----EEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCc
Q 043503 281 LDIGGGT--GTFAARMRERNV----TIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 281 LDIGcGt--G~~a~~La~~g~----~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d 354 (430)
-=||||. +.++..+.+.+. +++.+ .|.++...+.+.+.|. .. ..+.... -...|+|+..- ++
T Consensus 4 ~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~-~~r~~~~~~~~~~~g~-~~-~~~~~e~---~~~aDvVil~v------~~ 71 (266)
T PLN02688 4 GFIGAGKMAEAIARGLVASGVVPPSRISTA-DDSNPARRDVFQSLGV-KT-AASNTEV---VKSSDVIILAV------KP 71 (266)
T ss_pred EEECCcHHHHHHHHHHHHCCCCCcceEEEE-eCCCHHHHHHHHHcCC-EE-eCChHHH---HhcCCEEEEEE------Cc
Confidence 4467765 346666666665 66655 1444444444444454 21 1222111 12458887732 22
Q ss_pred hhHHHHHHHHHHhccCCcEEE
Q 043503 355 SMLEFTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lv 375 (430)
.....++.++...+++|..++
T Consensus 72 ~~~~~vl~~l~~~~~~~~~iI 92 (266)
T PLN02688 72 QVVKDVLTELRPLLSKDKLLV 92 (266)
T ss_pred HHHHHHHHHHHhhcCCCCEEE
Confidence 236677777777777776443
No 471
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=29.66 E-value=1.3e+02 Score=25.17 Aligned_cols=55 Identities=15% Similarity=0.074 Sum_probs=36.2
Q ss_pred hHHHHHHhcCC-eeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEE
Q 043503 311 PFNSFIASRGL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIF 374 (430)
Q Consensus 311 ~~le~a~~rg~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~l 374 (430)
.+.+.++++|. +.+.......++-.-+.+|+|+.. |. ....+.++...+.+-|.-
T Consensus 19 km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~-------PQ--v~~~~~~i~~~~~~~~ip 74 (99)
T cd05565 19 ALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILA-------PQ--MASYYDELKKDTDRLGIK 74 (99)
T ss_pred HHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEc-------Ch--HHHHHHHHHHHhhhcCCC
Confidence 45567777777 556555555555344568988884 33 556777888888887763
No 472
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=29.50 E-value=3.4e+02 Score=25.53 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=41.9
Q ss_pred cEEEEEcCCccHH--HHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEc
Q 043503 278 RIGLDIGGGTGTF--AARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~--a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~ 345 (430)
++||=+|+|.-.. +..+.+.|+.|+.++.++++...+. .+.|.+.++..+...-.+ ..+|+|++.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l-~~~~~i~~~~~~~~~~dl--~~~~lVi~a 76 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLL-AEQGGITWLARCFDADIL--EGAFLVIAA 76 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHH-HHcCCEEEEeCCCCHHHh--CCcEEEEEC
Confidence 3558898886432 4455566999998877776555444 445667777766542222 358888884
No 473
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=29.47 E-value=6.9e+02 Score=26.29 Aligned_cols=132 Identities=16% Similarity=0.188 Sum_probs=66.2
Q ss_pred hhHHHHHHHccCC---CCCccEEEEEcCCccH-HHHHHHHc-CCEEEEEecCCC------------hhHH----HHHHhc
Q 043503 261 LDYGIDQVLSMKP---LGTIRIGLDIGGGTGT-FAARMRER-NVTIITTSLNLD------------GPFN----SFIASR 319 (430)
Q Consensus 261 ~~~~id~lL~~~p---~~~ir~VLDIGcGtG~-~a~~La~~-g~~Vv~vdiD~s------------~~~l----e~a~~r 319 (430)
.+.+++.++.... ....++|+|.+-|+|. ++..+.+. |++|+.+..+++ +..+ +.+++.
T Consensus 146 ~~~Y~~~l~~~i~~~~i~~lkVvvd~~~Ga~~~~~~~ll~~lg~~vv~~~~~~d~~Fp~~~p~P~~~~~l~~l~~~v~~~ 225 (445)
T PRK09542 146 LADYAAFLRSLVDLSGIRPLKVAVDAGNGMGGHTVPAVLGGLPITLLPLYFELDGTFPNHEANPLDPANLVDLQAFVRET 225 (445)
T ss_pred HHHHHHHHHHhcccccCCCCEEEEECCCCchhHHHHHHHHhCCCEEEEEecCcCCCCCCCCcCCCCHHHHHHHHHHHHHc
Confidence 3445666654433 2357889999999975 45555555 888876522211 1222 222333
Q ss_pred CC-eeEE-EcccccCCCCCCceeEEEEccchhhcCCchhHHHHHH-HHHHhccCCcEEEEeeccccCcCcHHHHHHHHHH
Q 043503 320 GL-ISMH-ISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLY-DIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDR 396 (430)
Q Consensus 320 g~-i~~~-~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~-ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~ 396 (430)
+. +-+. -+|+.++- |+... ..++..+.+..++. .+.+. +++|.++.+- .+ ...+.+++++
T Consensus 226 ~adlGia~DgD~DR~~--------ivd~~--G~~l~~d~~~~l~~~~~l~~-~~~~~vv~~v-~s-----s~~~~~~a~~ 288 (445)
T PRK09542 226 GADIGLAFDGDADRCF--------VVDER--GQPVSPSAVTALVAARELAR-EPGATIIHNL-IT-----SRAVPELVAE 288 (445)
T ss_pred CCCEEEEECCCCceEE--------EECCC--CCCccHHHHHHHHHHHHHHH-CCCCeEEEee-cc-----chhHHHHHHH
Confidence 32 2222 23444432 22211 12233222333333 22222 4677766542 22 2445677888
Q ss_pred cCCEEEEEEeccc
Q 043503 397 IGFKKLRWNVGMK 409 (430)
Q Consensus 397 ~Gfk~l~~~~~~k 409 (430)
.|.+++++.++.+
T Consensus 289 ~g~~~~~t~vG~~ 301 (445)
T PRK09542 289 RGGTPVRTRVGHS 301 (445)
T ss_pred cCCeEEEecCcHH
Confidence 8999888777754
No 474
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=29.40 E-value=4.2e+02 Score=25.65 Aligned_cols=86 Identities=20% Similarity=0.137 Sum_probs=49.1
Q ss_pred EEEEc--CCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccC-----CCCCCceeEEEEccchhhc
Q 043503 280 GLDIG--GGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRL-----PFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 280 VLDIG--cGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l-----pf~d~sfDlV~~~~~L~~~ 351 (430)
+|=.| .+.|..+..+++. |++|+.+ ..++...+.+++-|.-.++..+...+ ...++.+|+|+....
T Consensus 143 vlI~ga~g~ig~~~~~~a~~~g~~v~~~--~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vd~v~~~~g---- 216 (329)
T cd08250 143 VLVTAAAGGTGQFAVQLAKLAGCHVIGT--CSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEYPKGVDVVYESVG---- 216 (329)
T ss_pred EEEEeCccHHHHHHHHHHHHcCCeEEEE--eCcHHHHHHHHHcCCceEEeCCCccHHHHHHHhcCCCCeEEEECCc----
Confidence 35555 4566677777766 8888877 33444555555545422222211111 011345888886311
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
...+.++.+.|+++|.++..
T Consensus 217 ------~~~~~~~~~~l~~~g~~v~~ 236 (329)
T cd08250 217 ------GEMFDTCVDNLALKGRLIVI 236 (329)
T ss_pred ------HHHHHHHHHHhccCCeEEEE
Confidence 13567888899999998753
No 475
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=29.29 E-value=46 Score=33.70 Aligned_cols=29 Identities=31% Similarity=0.329 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHhccCCcEEEEeeccccCc
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRFFCFGS 384 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f~~~~~ 384 (430)
.++.+|..+..+|+|||.+.+..|...+.
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfHSLED 246 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFHSLED 246 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 47889999999999999999988886553
No 476
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=29.22 E-value=1.2e+02 Score=30.80 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=47.0
Q ss_pred eeEEEcccccCC--CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 322 ISMHISVSQRLP--FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 322 i~~~~~d~~~lp--f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
+.++.++...+- -+.+.+|-++...+- .|+++..+..++.++.|-+.||..+++-+..
T Consensus 309 V~ihha~~iE~l~~k~ag~Vdr~iLlDaq-dwmtd~qln~lws~isrta~~gA~VifRtaa 368 (414)
T COG5379 309 VAIHHADIIELLAGKPAGNVDRYILLDAQ-DWMTDGQLNSLWSEISRTAEAGARVIFRTAA 368 (414)
T ss_pred eeeecccHHHHhccCCCCCcceEEEecch-hhcccchHHHHHHHHhhccCCCcEEEEeccc
Confidence 788888764433 357889999987776 7898888999999999999999999886544
No 477
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=29.19 E-value=4.1e+02 Score=25.97 Aligned_cols=88 Identities=19% Similarity=0.144 Sum_probs=48.6
Q ss_pred EEEEEcCC-ccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhcCCeeEEEccc------ccCCCCCCceeEEEEccchh
Q 043503 279 IGLDIGGG-TGTFAARMRER-N-VTIITTSLNLDGPFNSFIASRGLISMHISVS------QRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIGcG-tG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~------~~lpf~d~sfDlV~~~~~L~ 349 (430)
+||=.|+| .|..++.+++. | .+|+.+ +.++...+.+++-|.-.++.... .++ .+...+|+|+..-.
T Consensus 170 ~vlI~g~~~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~~~dvvld~~g-- 244 (340)
T cd05284 170 TVVVIGVGGLGHIAVQILRALTPATVIAV--DRSEEALKLAERLGADHVLNASDDVVEEVREL-TGGRGADAVIDFVG-- 244 (340)
T ss_pred EEEEEcCcHHHHHHHHHHHHhCCCcEEEE--eCCHHHHHHHHHhCCcEEEcCCccHHHHHHHH-hCCCCCCEEEEcCC--
Confidence 34555543 44555556655 6 788776 33444455555555422222111 111 12346899987311
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
. ...+.+..+.|+++|.++...
T Consensus 245 ----~---~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 245 ----S---DETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred ----C---HHHHHHHHHHhhcCCEEEEEc
Confidence 1 235778889999999998654
No 478
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=29.17 E-value=4.8e+02 Score=24.39 Aligned_cols=65 Identities=15% Similarity=0.133 Sum_probs=38.3
Q ss_pred cEEEEEcCCccH--HHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEc
Q 043503 278 RIGLDIGGGTGT--FAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~--~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~ 345 (430)
+.||=||+|.=. -+..|.+.|++|+.++.+..+...+.+. .+.+.+.....+.-.+ ..+|+|++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~-~~~i~~~~~~~~~~~l--~~adlViaa 77 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVE-EGKIRWKQKEFEPSDI--VDAFLVIAA 77 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHh-CCCEEEEecCCChhhc--CCceEEEEc
Confidence 455889887542 3445666688888886666665545443 3555554433322112 357888884
No 479
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=28.87 E-value=80 Score=28.77 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=48.1
Q ss_pred EEEEEcCCccHHHHHHHHc----CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCc
Q 043503 279 IGLDIGGGTGTFAARMRER----NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~----g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d 354 (430)
+|.=+|+ |.++..++++ |.+|+++|....+ .......+ +...+.+.+- ...|+|+..-.+. ++
T Consensus 38 tvgIiG~--G~IG~~vA~~l~~fG~~V~~~d~~~~~--~~~~~~~~---~~~~~l~ell---~~aDiv~~~~plt---~~ 104 (178)
T PF02826_consen 38 TVGIIGY--GRIGRAVARRLKAFGMRVIGYDRSPKP--EEGADEFG---VEYVSLDELL---AQADIVSLHLPLT---PE 104 (178)
T ss_dssp EEEEEST--SHHHHHHHHHHHHTT-EEEEEESSCHH--HHHHHHTT---EEESSHHHHH---HH-SEEEE-SSSS---TT
T ss_pred EEEEEEE--cCCcCeEeeeeecCCceeEEecccCCh--hhhccccc---ceeeehhhhc---chhhhhhhhhccc---cc
Confidence 4466655 5555555554 9999999554322 22122212 1222332221 3478888743331 11
Q ss_pred hhHHHHHHHHHHhccCCcEEEEeeccccCcC-cHHHHHHHHHHc
Q 043503 355 SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-LNETYVPMLDRI 397 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-~~~~~~~ll~~~ 397 (430)
....+=.+....+|+|.+|+=. ..++- ..+.+.+.+++-
T Consensus 105 -T~~li~~~~l~~mk~ga~lvN~---aRG~~vde~aL~~aL~~g 144 (178)
T PF02826_consen 105 -TRGLINAEFLAKMKPGAVLVNV---ARGELVDEDALLDALESG 144 (178)
T ss_dssp -TTTSBSHHHHHTSTTTEEEEES---SSGGGB-HHHHHHHHHTT
T ss_pred -cceeeeeeeeeccccceEEEec---cchhhhhhhHHHHHHhhc
Confidence 0111223667789998876542 22222 335566667664
No 480
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=28.79 E-value=3.5e+02 Score=26.85 Aligned_cols=87 Identities=15% Similarity=-0.003 Sum_probs=48.4
Q ss_pred EEEEEcCCc--cHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEE--cccc-------cCCCCCCceeEEEEccc
Q 043503 279 IGLDIGGGT--GTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHI--SVSQ-------RLPFFENTLDIVHSMHV 347 (430)
Q Consensus 279 ~VLDIGcGt--G~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~--~d~~-------~lpf~d~sfDlV~~~~~ 347 (430)
+|+=+|+|. |.++..|++.|..|+.++-+. .+...++|. .+.. ++.. ..+-....+|+|+..-=
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~----~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK 81 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD----YEAVRENGL-QVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLK 81 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC----HHHHHhCCe-EEEeCCCCeeecCceEEcchhhcCCCCEEEEEec
Confidence 357778775 457777777788887764332 233444453 1111 1100 00001356899887311
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
. .....++..+...+.|++.++.
T Consensus 82 ~------~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 82 T------TANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred C------CChHhHHHHHhhhcCCCCEEEE
Confidence 1 1145677788888889987654
No 481
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=28.73 E-value=3.7e+02 Score=25.81 Aligned_cols=87 Identities=14% Similarity=0.050 Sum_probs=48.4
Q ss_pred EEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEccc----ccCC--CCCCceeEEEEccchh
Q 043503 279 IGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVS----QRLP--FFENTLDIVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~----~~lp--f~d~sfDlV~~~~~L~ 349 (430)
+||=.|+ +.|..+..+++. |++++.+ ..++...+.+++.|.-.++.... +.+- .....+|+|+....-
T Consensus 141 ~vlI~g~~~~vg~~~~~~a~~~g~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~- 217 (323)
T cd05282 141 WVIQNAANSAVGRMLIQLAKLLGFKTINV--VRRDEQVEELKALGADEVIDSSPEDLAQRVKEATGGAGARLALDAVGG- 217 (323)
T ss_pred EEEEcccccHHHHHHHHHHHHCCCeEEEE--ecChHHHHHHHhcCCCEEecccchhHHHHHHHHhcCCCceEEEECCCC-
Confidence 3465565 466677777766 8888776 33344456665555422222111 1110 123468999873211
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
. ...++.+.|+++|.++..
T Consensus 218 ----~-----~~~~~~~~l~~~g~~v~~ 236 (323)
T cd05282 218 ----E-----SATRLARSLRPGGTLVNY 236 (323)
T ss_pred ----H-----HHHHHHHhhCCCCEEEEE
Confidence 1 234667899999998754
No 482
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=28.46 E-value=64 Score=32.71 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHhccCCcEEEEeeccccCc
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRFFCFGS 384 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f~~~~~ 384 (430)
.++.+|..+.++|+|||++.+..|...+.
T Consensus 222 ~L~~~L~~a~~~L~~gGRl~VIsFHSLED 250 (314)
T COG0275 222 ELEEALEAALDLLKPGGRLAVISFHSLED 250 (314)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEEecchHH
Confidence 48889999999999999999998886654
No 483
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=28.45 E-value=2.8e+02 Score=27.88 Aligned_cols=88 Identities=18% Similarity=0.156 Sum_probs=52.1
Q ss_pred EEEEcCCc--cHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcc---ccc----CCCCCCceeEEEEccchhh
Q 043503 280 GLDIGGGT--GTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISV---SQR----LPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 280 VLDIGcGt--G~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d---~~~----lpf~d~sfDlV~~~~~L~~ 350 (430)
|+=+|+|. +.++.+|++.|..|+.+ ...+..+..+++|+.-..... ... .+.....+|+|+.. += .
T Consensus 3 I~IlGaGAvG~l~g~~L~~~g~~V~~~---~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~-vK-a 77 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKAGHDVTLL---VRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVT-VK-A 77 (307)
T ss_pred EEEECCcHHHHHHHHHHHhCCCeEEEE---ecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEE-ec-c
Confidence 46677775 46888888888444433 223446667777762111111 001 11123469999883 11 1
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
+ .++.++..+...++|.-.+++
T Consensus 78 ~----q~~~al~~l~~~~~~~t~vl~ 99 (307)
T COG1893 78 Y----QLEEALPSLAPLLGPNTVVLF 99 (307)
T ss_pred c----cHHHHHHHhhhcCCCCcEEEE
Confidence 1 377899999999999987765
No 484
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=28.12 E-value=2.8e+02 Score=27.84 Aligned_cols=90 Identities=16% Similarity=0.126 Sum_probs=46.9
Q ss_pred EEEEcC-CccHHHHHHHHc-CCEEEEEecCCChhHHHHHH-hcCCeeEEEc-ccccCCCCCCceeEEEEccchhhcCCch
Q 043503 280 GLDIGG-GTGTFAARMRER-NVTIITTSLNLDGPFNSFIA-SRGLISMHIS-VSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 280 VLDIGc-GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~-~rg~i~~~~~-d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
||=+|+ +.|.++..+++. |.+++.++ .++...+.+. +-|.-.++.. +...+.-....+|+|+-.-.
T Consensus 184 vlV~G~G~vG~~av~~Ak~~G~~vi~~~--~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g-------- 253 (357)
T PLN02514 184 GGILGLGGVGHMGVKIAKAMGHHVTVIS--SSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVP-------- 253 (357)
T ss_pred EEEEcccHHHHHHHHHHHHCCCeEEEEe--CCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCC--------
Confidence 354554 345666666665 88877763 3343343333 3454222211 11111101124788876311
Q ss_pred hHHHHHHHHHHhccCCcEEEEeecc
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
....+..+.+.|++||.++.....
T Consensus 254 -~~~~~~~~~~~l~~~G~iv~~G~~ 277 (357)
T PLN02514 254 -VFHPLEPYLSLLKLDGKLILMGVI 277 (357)
T ss_pred -chHHHHHHHHHhccCCEEEEECCC
Confidence 113566778899999999876543
No 485
>PLN02494 adenosylhomocysteinase
Probab=27.80 E-value=1.4e+02 Score=32.18 Aligned_cols=87 Identities=16% Similarity=0.188 Sum_probs=47.4
Q ss_pred cEEEEEcCCc-cHHHHH-HHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCch
Q 043503 278 RIGLDIGGGT-GTFAAR-MRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~-La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
++|+=+|+|. |...+. +...|++|+.++.| +.-...+...|. .+. +.+.. -...|+|++.....
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~d--p~r~~eA~~~G~-~vv--~leEa---l~~ADVVI~tTGt~------ 320 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEID--PICALQALMEGY-QVL--TLEDV---VSEADIFVTTTGNK------ 320 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC--chhhHHHHhcCC-eec--cHHHH---HhhCCEEEECCCCc------
Confidence 4567787774 322222 22238999988554 322233444443 111 11111 12479998842221
Q ss_pred hHHHHHHHHHHhccCCcEEEEeecc
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
..+..+....+|+||+++....+
T Consensus 321 --~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 321 --DIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred --cchHHHHHhcCCCCCEEEEcCCC
Confidence 12346788899999999876543
No 486
>PLN02256 arogenate dehydrogenase
Probab=27.79 E-value=3.6e+02 Score=27.07 Aligned_cols=81 Identities=17% Similarity=0.110 Sum_probs=44.2
Q ss_pred EEEEEcCCc--cHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchh
Q 043503 279 IGLDIGGGT--GTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 279 ~VLDIGcGt--G~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
+|.=||+|. |.++..+.+.|.+|+++|.+ .. .+.+.+.|.. . ..+...+. ....|+|+.. .+...
T Consensus 38 kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~--~~-~~~a~~~gv~-~-~~~~~e~~--~~~aDvVila------vp~~~ 104 (304)
T PLN02256 38 KIGIVGFGNFGQFLAKTFVKQGHTVLATSRS--DY-SDIAAELGVS-F-FRDPDDFC--EEHPDVVLLC------TSILS 104 (304)
T ss_pred EEEEEeeCHHHHHHHHHHHhCCCEEEEEECc--cH-HHHHHHcCCe-e-eCCHHHHh--hCCCCEEEEe------cCHHH
Confidence 346678774 45666666668889888544 32 3444444542 1 12222211 1346888873 22223
Q ss_pred HHHHHHHH-HHhccCCc
Q 043503 357 LEFTLYDI-YRLLRPGG 372 (430)
Q Consensus 357 l~~~L~ei-~RvLrPGG 372 (430)
...++.++ ...++||.
T Consensus 105 ~~~vl~~l~~~~l~~~~ 121 (304)
T PLN02256 105 TEAVLRSLPLQRLKRST 121 (304)
T ss_pred HHHHHHhhhhhccCCCC
Confidence 56677776 45577765
No 487
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=27.67 E-value=1.8e+02 Score=23.89 Aligned_cols=66 Identities=11% Similarity=0.062 Sum_probs=36.7
Q ss_pred EcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCC-eeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHH
Q 043503 283 IGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTL 361 (430)
Q Consensus 283 IGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L 361 (430)
+-||+|.-+..+++ .+.+.++++|. +.+.......++-....+|+|+...- ....+
T Consensus 8 l~C~~G~sSS~l~~--------------k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pq---------i~~~~ 64 (95)
T TIGR00853 8 LLCAAGMSTSLLVN--------------KMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQ---------VAYML 64 (95)
T ss_pred EECCCchhHHHHHH--------------HHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECch---------HHHHH
Confidence 55777754444433 33456666776 55555554444322345899998533 33455
Q ss_pred HHHHHhccCC
Q 043503 362 YDIYRLLRPG 371 (430)
Q Consensus 362 ~ei~RvLrPG 371 (430)
.++...+.+-
T Consensus 65 ~~i~~~~~~~ 74 (95)
T TIGR00853 65 PDLKKETDKK 74 (95)
T ss_pred HHHHHHhhhc
Confidence 5666655543
No 488
>PLN02371 phosphoglucosamine mutase family protein
Probab=27.40 E-value=7.4e+02 Score=27.25 Aligned_cols=28 Identities=29% Similarity=0.480 Sum_probs=20.8
Q ss_pred CCccEEEEEcCCccH-HHHHHHHc-CCEEE
Q 043503 275 GTIRIGLDIGGGTGT-FAARMRER-NVTII 302 (430)
Q Consensus 275 ~~ir~VLDIGcGtG~-~a~~La~~-g~~Vv 302 (430)
...++|+|.+-|+|. ++..+.+. |++++
T Consensus 262 ~~lkIvvD~~nGag~~~~~~lL~~LG~~v~ 291 (583)
T PLN02371 262 EGFKIVVDAGNGAGGFFAEKVLEPLGADTS 291 (583)
T ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCCeE
Confidence 456889999999996 44555555 88776
No 489
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.34 E-value=1.2e+02 Score=28.42 Aligned_cols=46 Identities=15% Similarity=0.049 Sum_probs=33.8
Q ss_pred CCCceeEEEEccchhhcCC---------chhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 335 FENTLDIVHSMHVLSNWIP---------DSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~~---------d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
.++..|+||.+.++..+.. ...++.++..+..+|+|+-.+++..-.
T Consensus 47 ~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~ 101 (183)
T cd01842 47 EGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAM 101 (183)
T ss_pred cCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCC
Confidence 4567899999999855332 235777888888999999888775444
No 490
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=27.03 E-value=2.8e+02 Score=28.38 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=48.0
Q ss_pred EEEcCCc--cHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHH
Q 043503 281 LDIGGGT--GTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLE 358 (430)
Q Consensus 281 LDIGcGt--G~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~ 358 (430)
-=||+|. +.++..|.+.|.+|+..+. ......+.+.+.|.. ..+.... -...|+|+.. +|+....
T Consensus 21 gIIG~GsmG~AlA~~L~~sG~~Vvv~~r-~~~~s~~~A~~~G~~---~~s~~ea---a~~ADVVvLa------VPd~~~~ 87 (330)
T PRK05479 21 AIIGYGSQGHAHALNLRDSGVDVVVGLR-EGSKSWKKAEADGFE---VLTVAEA---AKWADVIMIL------LPDEVQA 87 (330)
T ss_pred EEEeeHHHHHHHHHHHHHCCCEEEEEEC-CchhhHHHHHHCCCe---eCCHHHH---HhcCCEEEEc------CCHHHHH
Confidence 5567776 3456666666888876532 223334445555542 1222221 1346888883 3443355
Q ss_pred HHH-HHHHHhccCCcEEEEe
Q 043503 359 FTL-YDIYRLLRPGGIFWLD 377 (430)
Q Consensus 359 ~~L-~ei~RvLrPGG~lvl~ 377 (430)
.++ .++...|+||..+.+.
T Consensus 88 ~V~~~~I~~~Lk~g~iL~~a 107 (330)
T PRK05479 88 EVYEEEIEPNLKEGAALAFA 107 (330)
T ss_pred HHHHHHHHhcCCCCCEEEEC
Confidence 666 6788889999887653
No 491
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=26.92 E-value=4.9e+02 Score=24.69 Aligned_cols=88 Identities=16% Similarity=0.116 Sum_probs=48.7
Q ss_pred EEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccchh
Q 043503 279 IGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L~ 349 (430)
.+|=.|+ |.|..++.++.. |.+++.+ +.+....+.+.+.|.-.++..+...++ .....+|+++....-
T Consensus 147 ~vli~g~~~~~g~~~~~~~~~~g~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~- 223 (328)
T cd08268 147 SVLITAASSSVGLAAIQIANAAGATVIAT--TRTSEKRDALLALGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDPVGG- 223 (328)
T ss_pred EEEEecCccHHHHHHHHHHHHcCCEEEEE--cCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHhCCCCceEEEECCch-
Confidence 4466665 445555555554 8888877 434555555555554222222111110 123468998873211
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
..+.++.+.++++|.++...
T Consensus 224 ---------~~~~~~~~~l~~~g~~v~~g 243 (328)
T cd08268 224 ---------PQFAKLADALAPGGTLVVYG 243 (328)
T ss_pred ---------HhHHHHHHhhccCCEEEEEE
Confidence 23557778899999988643
No 492
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=26.90 E-value=1.7e+02 Score=23.71 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=19.1
Q ss_pred CccEEEEEcCCccH-HHHHHHHc---CCEEEEEecC
Q 043503 276 TIRIGLDIGGGTGT-FAARMRER---NVTIITTSLN 307 (430)
Q Consensus 276 ~ir~VLDIGcGtG~-~a~~La~~---g~~Vv~vdiD 307 (430)
..++||=+||-+|. ++.+++.. |+..+++.++
T Consensus 38 GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 38 GPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp S-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 34678999999995 66566554 6777777554
No 493
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=26.59 E-value=1e+02 Score=32.44 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=35.1
Q ss_pred CCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcc-cccCCCCCCceeEEEEccch
Q 043503 285 GGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISV-SQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 285 cGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d-~~~lpf~d~sfDlV~~~~~L 348 (430)
.|-..+|..+.++|..|++.|.+...+..+..++.|. .++.+. ...+ . ..+|+|+.+..+
T Consensus 10 ~gm~~la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi-~~~~~~~~~~~--~-~~~d~vV~SpgI 70 (448)
T TIGR01081 10 TFMGGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGI-EIIEGFDAAQL--E-PKPDLVVIGNAM 70 (448)
T ss_pred HhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCC-EEeCCCCHHHC--C-CCCCEEEECCCC
Confidence 3444788888888999999976543333333333354 444332 2111 1 247999987666
No 494
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=26.30 E-value=3.8e+02 Score=26.39 Aligned_cols=86 Identities=21% Similarity=0.104 Sum_probs=46.9
Q ss_pred EEEcCC-ccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhcCCeeEEEccc-------ccCCCCCCceeEEEEccchhh
Q 043503 281 LDIGGG-TGTFAARMRER-N-VTIITTSLNLDGPFNSFIASRGLISMHISVS-------QRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 281 LDIGcG-tG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~-------~~lpf~d~sfDlV~~~~~L~~ 350 (430)
|=.|+| .|..+..+++. | .+++++ +.++...+.+++-|.-.++...- .++ .....+|+|+..-
T Consensus 171 lI~g~g~~g~~~~~~a~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~-~~~~~~d~vld~~---- 243 (345)
T cd08286 171 AIVGAGPVGLAALLTAQLYSPSKIIMV--DLDDNRLEVAKKLGATHTVNSAKGDAIEQVLEL-TDGRGVDVVIEAV---- 243 (345)
T ss_pred EEECCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCceeccccccHHHHHHHH-hCCCCCCEEEECC----
Confidence 335543 23344445554 7 677776 55555556666555422222111 111 1234699998632
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.. ...+..+.+.|+++|.++...
T Consensus 244 --g~---~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 244 --GI---PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred --CC---HHHHHHHHHhccCCcEEEEec
Confidence 11 224678889999999998643
No 495
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=26.03 E-value=2.9e+02 Score=25.44 Aligned_cols=68 Identities=13% Similarity=0.234 Sum_probs=37.4
Q ss_pred HHHHcCCEEEEEecCCChhHHHHHHhcCC-e--eEEEcccccCCC-CCCceeEEEEccchhhcCCchhHHHHHHHHHHhc
Q 043503 293 RMRERNVTIITTSLNLDGPFNSFIASRGL-I--SMHISVSQRLPF-FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLL 368 (430)
Q Consensus 293 ~La~~g~~Vv~vdiD~s~~~le~a~~rg~-i--~~~~~d~~~lpf-~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvL 368 (430)
.+...|..|.+.. ++. ...||- . .+..++-..-|. +.+..|++++.... .+.+...-|
T Consensus 25 a~~~~G~~v~~~~-~~g------~~~RGG~~~s~vRi~~~~~~~~~~~~~~D~lva~d~~-----------~~~~~~~~l 86 (197)
T PRK06274 25 AAMNEGFHVRTAE-TLG------MSQREGSVISHLRFGDEISSPLIPEGQADLLLALEPA-----------EVARNLHFL 86 (197)
T ss_pred HHHHcCCCeEecc-ccC------chhhCCeEEEEEEEcCccCCCccCCCCCCEEEEcCHH-----------HHHHHHhhc
Confidence 3334488887662 221 234444 2 222233212233 25789999994222 124455679
Q ss_pred cCCcEEEEee
Q 043503 369 RPGGIFWLDR 378 (430)
Q Consensus 369 rPGG~lvl~~ 378 (430)
+|||.++++.
T Consensus 87 ~~gg~ii~ns 96 (197)
T PRK06274 87 KKGGKIIVNA 96 (197)
T ss_pred CCCcEEEEEC
Confidence 9999999885
No 496
>PLN02712 arogenate dehydrogenase
Probab=25.84 E-value=3.1e+02 Score=30.89 Aligned_cols=81 Identities=17% Similarity=0.076 Sum_probs=45.3
Q ss_pred EEEEEcCCc--cHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchh
Q 043503 279 IGLDIGGGT--GTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 279 ~VLDIGcGt--G~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
+|.=||+|. |.++..+.+.|.+|+++|.+ .. .+.+.+.|.. . ..+...+- ....|+|+.. ++...
T Consensus 54 kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~--~~-~~~A~~~Gv~-~-~~d~~e~~--~~~aDvViLa------vP~~~ 120 (667)
T PLN02712 54 KIAIIGFGNYGQFLAKTLISQGHTVLAHSRS--DH-SLAARSLGVS-F-FLDPHDLC--ERHPDVILLC------TSIIS 120 (667)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCEEEEEeCC--HH-HHHHHHcCCE-E-eCCHHHHh--hcCCCEEEEc------CCHHH
Confidence 346688876 56777777778899888543 22 2445555542 2 22222211 1236888874 22223
Q ss_pred HHHHHHHHH-HhccCCc
Q 043503 357 LEFTLYDIY-RLLRPGG 372 (430)
Q Consensus 357 l~~~L~ei~-RvLrPGG 372 (430)
...++.++. ..++||.
T Consensus 121 ~~~vl~~l~~~~l~~g~ 137 (667)
T PLN02712 121 TENVLKSLPLQRLKRNT 137 (667)
T ss_pred HHHHHHhhhhhcCCCCe
Confidence 566666664 4567766
No 497
>PRK10206 putative oxidoreductase; Provisional
Probab=25.68 E-value=2.5e+02 Score=28.48 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=31.1
Q ss_pred EEEcCCc-cH-H-HHHHHHc--CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEc
Q 043503 281 LDIGGGT-GT-F-AARMRER--NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSM 345 (430)
Q Consensus 281 LDIGcGt-G~-~-a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~ 345 (430)
-=||||. +. + ...+... +++++++ .|.++...+.+.+.+.+.++ .+.+.+ +.+...|+|+..
T Consensus 5 giiG~G~~~~~~h~~~~~~~~~~~~l~av-~d~~~~~~~~~~~~~~~~~~-~~~~el-l~~~~iD~V~I~ 71 (344)
T PRK10206 5 AFIGFGKSTTRYHLPYVLNRKDSWHVAHI-FRRHAKPEEQAPIYSHIHFT-SDLDEV-LNDPDVKLVVVC 71 (344)
T ss_pred EEECCCHHHhheehhhHhcCCCCEEEEEE-EcCChhHHHHHHhcCCCccc-CCHHHH-hcCCCCCEEEEe
Confidence 5589996 32 2 2323332 5778765 35544333444433433322 233332 335578998873
No 498
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=25.22 E-value=3.6e+02 Score=22.32 Aligned_cols=11 Identities=18% Similarity=0.287 Sum_probs=8.1
Q ss_pred CCceeEEEEcc
Q 043503 336 ENTLDIVHSMH 346 (430)
Q Consensus 336 d~sfDlV~~~~ 346 (430)
...+|+++++.
T Consensus 47 ~~~aDiiv~s~ 57 (93)
T COG3414 47 TDGADIIVTST 57 (93)
T ss_pred CCcccEEEEeh
Confidence 45679999963
No 499
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=25.16 E-value=4.4e+02 Score=25.74 Aligned_cols=89 Identities=8% Similarity=-0.081 Sum_probs=47.5
Q ss_pred EEEEEcCCc--cHHHHHHHHcCCEEEEEecCCChhHHHHHHh-----------cCCee----------E-EEcccccCCC
Q 043503 279 IGLDIGGGT--GTFAARMRERNVTIITTSLNLDGPFNSFIAS-----------RGLIS----------M-HISVSQRLPF 334 (430)
Q Consensus 279 ~VLDIGcGt--G~~a~~La~~g~~Vv~vdiD~s~~~le~a~~-----------rg~i~----------~-~~~d~~~lpf 334 (430)
+|.=||+|. +.++..+++.|.+|+.+|. ++..++.+.+ +|.+. + ...+...
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--- 77 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDI--KQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKA--- 77 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHH---
Confidence 446677764 3466677777999998854 4544444322 12110 1 1111111
Q ss_pred CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
.-...|+|+..-.- +......++.++.+.++|+..++.
T Consensus 78 ~~~~aD~Vi~avpe----~~~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 78 AVADADLVIEAVPE----KLELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred hhcCCCEEEEeccC----CHHHHHHHHHHHHhhCCCCcEEEE
Confidence 11346888863111 111234677788888988876654
No 500
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=25.05 E-value=4.6e+02 Score=26.99 Aligned_cols=87 Identities=15% Similarity=0.110 Sum_probs=49.7
Q ss_pred EEEEEc--CCccHHHHHHHHc-CC---EEEEEecCCChhHHHHHHhc--------CCe-eEEEccc-ccCC------CCC
Q 043503 279 IGLDIG--GGTGTFAARMRER-NV---TIITTSLNLDGPFNSFIASR--------GLI-SMHISVS-QRLP------FFE 336 (430)
Q Consensus 279 ~VLDIG--cGtG~~a~~La~~-g~---~Vv~vdiD~s~~~le~a~~r--------g~i-~~~~~d~-~~lp------f~d 336 (430)
+||=+| .|.|.++..+++. |. +|+++ |.++..++.+++. |.. .++.... ..+. ...
T Consensus 178 ~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g 255 (410)
T cd08238 178 NTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGG 255 (410)
T ss_pred EEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCC
Confidence 346665 4577888878776 43 68877 6667667777664 321 1121100 1110 123
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
..+|+|+..-.- ...+.+..+.++++|.+++
T Consensus 256 ~g~D~vid~~g~---------~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 256 QGFDDVFVFVPV---------PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred CCCCEEEEcCCC---------HHHHHHHHHHhccCCeEEE
Confidence 468988873111 2356778889998886654
Done!