BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043504
         (416 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
           Of Feob From Klebsiella Pneumoniae In Apo Form
 pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
           Of Feob From Klebsiella Pneumoniae In Apo Form
 pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
           Of Feob From Klebsiella Pneumoniae In Gdp Binding State
 pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
           Of Feob From Klebsiella Pneumoniae In Gdp Binding State
 pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
           Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
           State
          Length = 267

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 123 RIPVDYLALRLGLPFVPSYLSQTGGVEGM 151
           RI +D LA RLG P +P   ++  G+E +
Sbjct: 131 RIDIDALAARLGCPVIPLVSTRGRGIEAL 159


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.141    0.457 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,027,526
Number of Sequences: 62578
Number of extensions: 443765
Number of successful extensions: 1004
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1003
Number of HSP's gapped (non-prelim): 2
length of query: 416
length of database: 14,973,337
effective HSP length: 101
effective length of query: 315
effective length of database: 8,652,959
effective search space: 2725682085
effective search space used: 2725682085
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)