BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043505
(75 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XXQ|A Chain A, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra
pdb|1XXQ|B Chain B, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra
pdb|1XXQ|C Chain C, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra
pdb|1XXQ|D Chain D, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra
pdb|1XXR|A Chain A, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra In Complex With Mannose
pdb|1XXR|B Chain B, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra In Complex With Mannose
pdb|1XXR|C Chain C, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra In Complex With Mannose
pdb|1XXR|D Chain D, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra In Complex With Mannose
Length = 161
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 14 VTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGS-GGFK 72
+ VG WGG G WDDG ++ +R++ +S+G I + + YD G H G+ FK
Sbjct: 17 IEVGLWGGPGGNAWDDGSYTGIREINLSHGDAIGAFSVIYDLNGQPFTGPTHPGNEPSFK 76
Query: 73 TNK 75
T K
Sbjct: 77 TVK 79
>pdb|3P8S|A Chain A, Crystal Structure Of Single Chain Recombinant Jacalin
Showing Highly Dynamic Posttranslational Excission Loop
That Reduces Binding Affinity
pdb|3P8S|B Chain B, Crystal Structure Of Single Chain Recombinant Jacalin
Showing Highly Dynamic Posttranslational Excission Loop
That Reduces Binding Affinity
Length = 157
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 14 VTVGPWGGQ-----NGARWDDGVFSSVRQVVISYG--AGIDSILIEYDKKGSSVWSDKH 65
V VGPWG + NG +DDG F+ +R++ +SY I + + YD GS H
Sbjct: 10 VIVGPWGAKVSTSSNGKAFDDGAFTGIREINLSYNKETAIGDLQVVYDLNGSPYVGQNH 68
>pdb|2JZ4|A Chain A, Putative 32 Kda Myrosinase Binding Protein At3g16450.1
From Arabidopsis Thaliana
Length = 299
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 20 GGQNGARWDDGVFSSVRQVVISYGA-GIDSILIEYDKKGSSVWSDKHG 66
GG G WDDG + V++V + G GI ++ EY+K ++ +HG
Sbjct: 160 GGDEGTAWDDGAYDGVKKVYVGQGQDGISAVKFEYNKGAENIVGGEHG 207
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 26 RWDDGVFSSVRQVVISYGA-GIDSILIEYDKKGSSVWSDKHG 66
WDDGV VR+V + G G+ SI + Y K V +HG
Sbjct: 14 SWDDGVHDGVRKVHVGQGQDGVSSINVVYAKDSQDVEGGEHG 55
>pdb|1J4T|A Chain A, Structure Of Artocarpin: A Lectin With Mannose
Specificity (Form 2)
pdb|1J4T|B Chain B, Structure Of Artocarpin: A Lectin With Mannose
Specificity (Form 2)
pdb|1J4T|C Chain C, Structure Of Artocarpin: A Lectin With Mannose
Specificity (Form 2)
pdb|1J4T|D Chain D, Structure Of Artocarpin: A Lectin With Mannose
Specificity (Form 2)
pdb|1J4T|E Chain E, Structure Of Artocarpin: A Lectin With Mannose
Specificity (Form 2)
pdb|1J4T|F Chain F, Structure Of Artocarpin: A Lectin With Mannose
Specificity (Form 2)
pdb|1J4T|G Chain G, Structure Of Artocarpin: A Lectin With Mannose
Specificity (Form 2)
pdb|1J4T|H Chain H, Structure Of Artocarpin: A Lectin With Mannose
Specificity (Form 2)
pdb|1J4U|A Chain A, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|B Chain B, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|C Chain C, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|D Chain D, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
Length = 149
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%)
Query: 14 VTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGSGGFKT 73
+TVG WGG G WD+G ++ +RQ+ +SY I S + YD G KH +K
Sbjct: 5 ITVGSWGGPGGNGWDEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKN 64
Query: 74 NK 75
K
Sbjct: 65 VK 66
>pdb|1J4S|A Chain A, Structure Of Artocarpin: A Lectin With Mannose
Specificity (Form 1)
pdb|1J4S|B Chain B, Structure Of Artocarpin: A Lectin With Mannose
Specificity (Form 1)
pdb|1J4S|C Chain C, Structure Of Artocarpin: A Lectin With Mannose
Specificity (Form 1)
pdb|1J4S|D Chain D, Structure Of Artocarpin: A Lectin With Mannose
Specificity (Form 1)
Length = 149
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%)
Query: 14 VTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGSGGFKT 73
+TVG WGG G WD+G ++ +RQ+ +SY I S + YD G KH +K
Sbjct: 5 ITVGSWGGPGGNGWDEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKN 64
Query: 74 NK 75
K
Sbjct: 65 VK 66
>pdb|1ZGR|A Chain A, Crystal Structure Of The Parkia Platycephala Seed Lectin
pdb|1ZGR|B Chain B, Crystal Structure Of The Parkia Platycephala Seed Lectin
pdb|1ZGS|A Chain A, Parkia Platycephala Seed Lectin In Complex With 5-Bromo-4-
Chloro-3-Indolyl-A-D-Mannose
pdb|1ZGS|B Chain B, Parkia Platycephala Seed Lectin In Complex With 5-Bromo-4-
Chloro-3-Indolyl-A-D-Mannose
Length = 447
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 14 VTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIE 52
+++GPWGG G W + Q++I G+ I S+ +
Sbjct: 301 ISIGPWGGSGGDPWSYTANEGINQIIIYAGSNIKSVAFK 339
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 14 VTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSI 49
++VGPWGG G W ++ ++VI I SI
Sbjct: 6 ISVGPWGGSGGNYWSFKANHAITEIVIHVKDNIKSI 41
>pdb|4AK4|A Chain A, High Resolution Structure Of Galactose Binding Lectin
From Champedak (cgb)
pdb|4AK4|C Chain C, High Resolution Structure Of Galactose Binding Lectin
From Champedak (cgb)
pdb|4AK4|E Chain E, High Resolution Structure Of Galactose Binding Lectin
From Champedak (cgb)
pdb|4AK4|G Chain G, High Resolution Structure Of Galactose Binding Lectin
From Champedak (cgb)
pdb|4AK4|I Chain I, High Resolution Structure Of Galactose Binding Lectin
From Champedak (cgb)
pdb|4AK4|K Chain K, High Resolution Structure Of Galactose Binding Lectin
From Champedak (cgb)
pdb|4AK4|M Chain M, High Resolution Structure Of Galactose Binding Lectin
From Champedak (cgb)
pdb|4AK4|O Chain O, High Resolution Structure Of Galactose Binding Lectin
From Champedak (cgb)
Length = 133
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 24 GARWDDGVFSSVRQVVISYG--AGIDSILIEYDKKGSSVWSDKH 65
G +DDGVF+ +R++ +SY I + YD GS + H
Sbjct: 1 GKAFDDGVFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGENH 44
>pdb|1OUW|A Chain A, Crystal Structure Of Calystegia Sepium Agglutinin
pdb|1OUW|B Chain B, Crystal Structure Of Calystegia Sepium Agglutinin
pdb|1OUW|C Chain C, Crystal Structure Of Calystegia Sepium Agglutinin
pdb|1OUW|D Chain D, Crystal Structure Of Calystegia Sepium Agglutinin
Length = 152
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 17 GPWGGQNGARWDDGVFSSVRQVVISYGAG 45
GPWG G W + + Q+VISYG G
Sbjct: 9 GPWGNNGGNFWSFRPVNKINQIVISYGGG 37
>pdb|1WY5|A Chain A, Crystal Structure Of Isoluecyl-Trna Lysidine Synthetase
pdb|1WY5|B Chain B, Crystal Structure Of Isoluecyl-Trna Lysidine Synthetase
pdb|2E21|A Chain A, Crystal Structure Of Tils In A Complex With Amppnp From
Aquifex Aeolicus.
pdb|2E21|B Chain B, Crystal Structure Of Tils In A Complex With Amppnp From
Aquifex Aeolicus.
pdb|2E21|C Chain C, Crystal Structure Of Tils In A Complex With Amppnp From
Aquifex Aeolicus.
pdb|2E21|D Chain D, Crystal Structure Of Tils In A Complex With Amppnp From
Aquifex Aeolicus.
pdb|2E89|A Chain A, Crystal Structure Of Aquifex Aeolicus Tils In A Complex
With Atp, Magnesium Ion, And L-Lysine
pdb|2E89|C Chain C, Crystal Structure Of Aquifex Aeolicus Tils In A Complex
With Atp, Magnesium Ion, And L-Lysine
pdb|2E89|D Chain D, Crystal Structure Of Aquifex Aeolicus Tils In A Complex
With Atp, Magnesium Ion, And L-Lysine
pdb|2E89|B Chain B, Crystal Structure Of Aquifex Aeolicus Tils In A Complex
With Atp, Magnesium Ion, And L-Lysine
Length = 317
Score = 28.5 bits (62), Expect = 0.90, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 19/24 (79%)
Query: 28 DDGVFSSVRQVVISYGAGIDSILI 51
D+ +FS R+V+I++ G+DS+++
Sbjct: 17 DEKIFSGERRVLIAFSGGVDSVVL 40
>pdb|1C3K|A Chain A, Crystal Structure Of Helianthus Tuberosus Lectin
pdb|1C3M|A Chain A, Crystal Structure Of Heltuba Complexed To Man(1-3)man
pdb|1C3N|A Chain A, Crystal Structure Of Helianthus Tuberosus Lectin
Complexed To Man(1- 2)man
Length = 147
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 10 EDDHVTVGPWGGQNGARWDDGVF-SSVRQVVISYGAGIDSILIEYDKK 56
D V GPWGG G RW + ++I G I SI Y K
Sbjct: 4 SDIAVQAGPWGGNGGKRWLQTAHGGKITSIIIKGGTCIFSIQFVYKDK 51
>pdb|4AKB|A Chain A, Structure Of Galactose Binding Lectin From Champedak
(cgb) With Galactose
pdb|4AKB|C Chain C, Structure Of Galactose Binding Lectin From Champedak
(cgb) With Galactose
pdb|4AKB|E Chain E, Structure Of Galactose Binding Lectin From Champedak
(cgb) With Galactose
pdb|4AKB|G Chain G, Structure Of Galactose Binding Lectin From Champedak
(cgb) With Galactose
pdb|4AKC|A Chain A, Structure Of Galactose Binding Lectin From Champedak
(cgb) With Gal(beta)1,3-galnac
pdb|4AKC|C Chain C, Structure Of Galactose Binding Lectin From Champedak
(cgb) With Gal(beta)1,3-galnac
pdb|4AKC|E Chain E, Structure Of Galactose Binding Lectin From Champedak
(cgb) With Gal(beta)1,3-galnac
pdb|4AKC|G Chain G, Structure Of Galactose Binding Lectin From Champedak
(cgb) With Gal(beta)1,3-galnac
Length = 133
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 24 GARWDDGVFSSVRQVVISYG--AGIDSILIEYDKKGSSVWSDKH 65
G +DDG F+ +R++ +SY I + YD GS + H
Sbjct: 1 GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGENH 44
>pdb|1JAC|A Chain A, A Novel Mode Of Carbohydrate Recognition In Jacalin, A
Moraceae Plant Lectin With A Beta-Prism
pdb|1JAC|C Chain C, A Novel Mode Of Carbohydrate Recognition In Jacalin, A
Moraceae Plant Lectin With A Beta-Prism
pdb|1JAC|E Chain E, A Novel Mode Of Carbohydrate Recognition In Jacalin, A
Moraceae Plant Lectin With A Beta-Prism
pdb|1JAC|G Chain G, A Novel Mode Of Carbohydrate Recognition In Jacalin, A
Moraceae Plant Lectin With A Beta-Prism
pdb|1KU8|A Chain A, Crystal Structure Of Jacalin
pdb|1KU8|C Chain C, Crystal Structure Of Jacalin
pdb|1KU8|E Chain E, Crystal Structure Of Jacalin
pdb|1KU8|G Chain G, Crystal Structure Of Jacalin
pdb|1KUJ|A Chain A, Crystal Structure Of Jacalin Complexed With 1-o-methyl-
Alpha-d-mannose
pdb|1KUJ|C Chain C, Crystal Structure Of Jacalin Complexed With 1-o-methyl-
Alpha-d-mannose
pdb|1KUJ|E Chain E, Crystal Structure Of Jacalin Complexed With 1-o-methyl-
Alpha-d-mannose
pdb|1KUJ|G Chain G, Crystal Structure Of Jacalin Complexed With 1-o-methyl-
Alpha-d-mannose
pdb|1M26|A Chain A, Crystal Structure Of Jacalin-T-Antigen Complex
pdb|1M26|C Chain C, Crystal Structure Of Jacalin-T-Antigen Complex
pdb|1M26|E Chain E, Crystal Structure Of Jacalin-T-Antigen Complex
pdb|1M26|G Chain G, Crystal Structure Of Jacalin-T-Antigen Complex
pdb|1UGW|C Chain C, Crystal Structure Of Jacalin- Gal Complex
pdb|1UGW|E Chain E, Crystal Structure Of Jacalin- Gal Complex
pdb|1UGY|C Chain C, Crystal Structure Of Jacalin- Mellibiose
(Gal-Alpha(1-6)- Glc) Complex
pdb|1UGY|E Chain E, Crystal Structure Of Jacalin- Mellibiose
(Gal-Alpha(1-6)- Glc) Complex
pdb|1UH0|A Chain A, Crystal Structure Of Jacalin- Me-Alpha-Galnac Complex
pdb|1UH0|C Chain C, Crystal Structure Of Jacalin- Me-Alpha-Galnac Complex
pdb|1UH0|E Chain E, Crystal Structure Of Jacalin- Me-Alpha-Galnac Complex
pdb|1UH0|G Chain G, Crystal Structure Of Jacalin- Me-Alpha-Galnac Complex
pdb|1UH1|A Chain A, Crystal Structure Of Jacalin-
Galnac-Beta(1-3)-Gal-Alpha-O-Me Complex
pdb|1UH1|C Chain C, Crystal Structure Of Jacalin-
Galnac-Beta(1-3)-Gal-Alpha-O-Me Complex
pdb|1UH1|E Chain E, Crystal Structure Of Jacalin-
Galnac-Beta(1-3)-Gal-Alpha-O-Me Complex
pdb|1UH1|G Chain G, Crystal Structure Of Jacalin-
Galnac-Beta(1-3)-Gal-Alpha-O-Me Complex
pdb|1PXD|A Chain A, Crystal Structure Of The Complex Of Jacalin With Meso-
Tetrasulphonatophenylporphyrin.
pdb|1WS4|C Chain C, Crystal Structure Of Jacalin- Me-alpha-mannose Complex:
Promiscuity Vs Specificity
pdb|1WS4|E Chain E, Crystal Structure Of Jacalin- Me-alpha-mannose Complex:
Promiscuity Vs Specificity
pdb|1WS5|C Chain C, Crystal Structure Of Jacalin-Me-Alpha-Mannose Complex:
Promiscuity Vs Specificity
pdb|1WS5|E Chain E, Crystal Structure Of Jacalin-Me-Alpha-Mannose Complex:
Promiscuity Vs Specificity
Length = 133
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 24 GARWDDGVFSSVRQVVISYG--AGIDSILIEYDKKGSSVWSDKH 65
G +DDG F+ +R++ +SY I + YD GS H
Sbjct: 1 GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNH 44
>pdb|1TOQ|A Chain A, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-a-d-galactose
pdb|1TOQ|C Chain C, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-a-d-galactose
pdb|1TOQ|E Chain E, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-a-d-galactose
pdb|1TOQ|G Chain G, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-a-d-galactose
pdb|1TP8|A Chain A, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-A-D-Galactose
pdb|1TP8|C Chain C, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-A-D-Galactose
pdb|1TP8|E Chain E, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-A-D-Galactose
pdb|1TP8|G Chain G, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-A-D-Galactose
Length = 133
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 24 GARWDDGVFSSVRQVVISYG--AGIDSILIEYDKKGSSVWSDKH 65
G +DDG F+ +R++ +SY I + YD GS H
Sbjct: 1 GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNH 44
>pdb|1UGW|A Chain A, Crystal Structure Of Jacalin- Gal Complex
pdb|1UGW|G Chain G, Crystal Structure Of Jacalin- Gal Complex
pdb|1UGX|A Chain A, Crystal Structure Of Jacalin- Me-Alpha-T-Antigen
(Gal-Beta(1-3)- Galnac-Alpha-O-Me) Complex
pdb|1UGY|A Chain A, Crystal Structure Of Jacalin- Mellibiose
(Gal-Alpha(1-6)- Glc) Complex
pdb|1UGY|G Chain G, Crystal Structure Of Jacalin- Mellibiose
(Gal-Alpha(1-6)- Glc) Complex
pdb|1WS4|A Chain A, Crystal Structure Of Jacalin- Me-alpha-mannose Complex:
Promiscuity Vs Specificity
pdb|1WS4|G Chain G, Crystal Structure Of Jacalin- Me-alpha-mannose Complex:
Promiscuity Vs Specificity
pdb|1WS5|A Chain A, Crystal Structure Of Jacalin-Me-Alpha-Mannose Complex:
Promiscuity Vs Specificity
pdb|1WS5|G Chain G, Crystal Structure Of Jacalin-Me-Alpha-Mannose Complex:
Promiscuity Vs Specificity
Length = 133
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 24 GARWDDGVFSSVRQVVISYG--AGIDSILIEYDKKGSSVWSDKH 65
G +DDG F+ +R++ +SY I + YD GS H
Sbjct: 1 GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNH 44
>pdb|4AKD|A Chain A, High Resolution Structure Of Mannose Binding Lectin From
Champedak (cmb)
pdb|4AKD|B Chain B, High Resolution Structure Of Mannose Binding Lectin From
Champedak (cmb)
pdb|4AKD|C Chain C, High Resolution Structure Of Mannose Binding Lectin From
Champedak (cmb)
pdb|4AKD|D Chain D, High Resolution Structure Of Mannose Binding Lectin From
Champedak (cmb)
Length = 150
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 14 VTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGSGGFKT 73
+TVGPWGG G WDDG ++ +RQ+ +SY I S + YD G S KH +K
Sbjct: 6 ITVGPWGGSGGNGWDDGSYTGIRQIELSYKEAIGSFCVIYDLNGESFPGPKHTSKLPYKN 65
Query: 74 NK 75
K
Sbjct: 66 VK 67
>pdb|1ZTY|A Chain A, Crystal Structure Of The Chitin Oligasaccharide Binding
Protein
pdb|1ZU0|A Chain A, Crystal Structure Of The Liganded Chitin Oligasaccharide
Binding Protein
Length = 529
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 5 ERYEVEDDHVTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVW 61
E Y++ DD ++V + + G +W DG + VV S+ G+ E D++G + W
Sbjct: 54 ESYKMADDLMSV-TFDIRKGVKWSDGEAFTADDVVYSF--GLLKAKPELDQRGINKW 107
>pdb|1X1V|A Chain A, Structure Of Banana Lectin- Methyl-Alpha-Mannose Complex
pdb|1X1V|B Chain B, Structure Of Banana Lectin- Methyl-Alpha-Mannose Complex
pdb|3MIT|A Chain A, Structure Of Banana Lectin-Alpha-D-Mannose Complex
pdb|3MIT|B Chain B, Structure Of Banana Lectin-Alpha-D-Mannose Complex
pdb|3MIU|A Chain A, Structure Of Banana Lectin-Pentamannose Complex
pdb|3MIU|B Chain B, Structure Of Banana Lectin-Pentamannose Complex
pdb|3MIV|A Chain A, Structure Of Banana Lectin - Glc-Alpha(1,2)-Glc Complex
pdb|3MIV|B Chain B, Structure Of Banana Lectin - Glc-Alpha(1,2)-Glc Complex
Length = 141
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 14 VTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGSGG 70
+ VG WGG G+ +D G + V I G +D++ + + G + + GGSGG
Sbjct: 5 IKVGAWGGNGGSAFDMGPAYRIISVKIFSGDVVDAVDVTFTYYGKT-ETRHFGGSGG 60
>pdb|2BMY|A Chain A, Banana Lectin
pdb|2BMY|B Chain B, Banana Lectin
pdb|2BMZ|A Chain A, Banana Lectin Bound To Xyl-B1,3 Man-A-O-Methyl (Xm)
pdb|2BMZ|B Chain B, Banana Lectin Bound To Xyl-B1,3 Man-A-O-Methyl (Xm)
pdb|2BN0|A Chain A, Banana Lectin Bound To Laminaribiose
pdb|2BN0|B Chain B, Banana Lectin Bound To Laminaribiose
Length = 141
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 14 VTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGSGG 70
+ VG WGG G+ +D G + V I G +D + + + G + + +GGSGG
Sbjct: 5 IKVGAWGGNGGSAFDMGPAYRIISVKIFSGDVVDGVDVTFTYYGKT-ETRHYGGSGG 60
>pdb|1VBP|A Chain A, Crystal Structure Of Artocarpin-Mannopentose Complex
pdb|1VBP|B Chain B, Crystal Structure Of Artocarpin-Mannopentose Complex
Length = 149
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 32 FSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGSGGFKTNK 75
++ +RQ+ +SY I S + YD G KH +K K
Sbjct: 23 YTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVK 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,740,483
Number of Sequences: 62578
Number of extensions: 97534
Number of successful extensions: 185
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 165
Number of HSP's gapped (non-prelim): 24
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)