Query 043505
Match_columns 75
No_of_seqs 106 out of 309
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:44:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043505.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043505hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02193 nitrile-specifier pro 99.6 1.1E-14 2.3E-19 110.3 7.4 58 13-70 2-60 (470)
2 PF01419 Jacalin: Jacalin-like 98.8 5.8E-09 1.3E-13 66.9 3.6 47 24-70 1-48 (130)
3 PF01419 Jacalin: Jacalin-like 84.6 2.3 5E-05 26.8 4.2 39 15-53 88-128 (130)
4 KOG4525 Jacalin-like lectin do 57.8 19 0.0004 29.1 4.0 49 21-75 491-542 (614)
5 PF01289 Thiol_cytolysin: Thio 34.7 61 0.0013 25.7 3.7 36 37-72 361-403 (467)
6 PF05593 RHS_repeat: RHS Repea 34.1 67 0.0015 16.1 3.6 27 33-62 5-31 (38)
7 PF05171 HemS: Haemin-degradin 34.0 49 0.0011 21.0 2.6 48 14-62 58-110 (129)
8 PF07080 DUF1348: Protein of u 34.0 95 0.0021 21.0 4.0 24 35-59 71-97 (143)
9 PF11454 DUF3016: Protein of u 33.7 76 0.0016 21.2 3.6 24 40-63 79-105 (141)
10 PF09697 Porph_ging: Protein o 28.7 26 0.00055 20.8 0.6 18 3-20 43-60 (70)
11 PF10622 Ehbp: Energy-converti 26.3 28 0.0006 21.3 0.4 11 1-11 6-16 (78)
12 PLN02193 nitrile-specifier pro 25.2 2.7E+02 0.0057 21.3 5.7 43 26-71 65-114 (470)
13 TIGR01643 YD_repeat_2x YD repe 23.8 1.1E+02 0.0023 15.1 2.6 15 48-62 17-31 (42)
14 PF15283 DUF4595: Domain of un 21.8 2.6E+02 0.0056 18.9 4.6 29 34-62 58-87 (197)
15 PF14408 Actino_peptide: Ribos 20.9 1.5E+02 0.0033 17.0 2.8 24 47-70 12-35 (59)
16 PF08918 PhoQ_Sensor: PhoQ Sen 20.6 1.2E+02 0.0026 21.3 2.7 20 45-64 72-91 (180)
No 1
>PLN02193 nitrile-specifier protein
Probab=99.56 E-value=1.1e-14 Score=110.27 Aligned_cols=58 Identities=34% Similarity=0.619 Sum_probs=53.7
Q ss_pred cEEEceeeCCCCcccccCCCCCEEEEEEEeC-CcEeEEEEEEccCCCEEEcCCCCCCCC
Q 043505 13 HVTVGPWGGQNGARWDDGVFSSVRQVVISYG-AGIDSILIEYDKKGSSVWSDKHGGSGG 70 (75)
Q Consensus 13 ~~KiGpwGG~GG~~wDdg~~~~v~~I~I~~~-~~I~si~f~Yd~~G~~~~~~~~Gg~gG 70 (75)
..|++||||+||++|||+.+++||||+|.++ .+|++|+|+||++++++.+..||...+
T Consensus 2 ~~~~~~~gg~~g~~wddg~~~~v~~i~~~~~~~~i~~~~~~y~~~~~~~~~~~~g~~~~ 60 (470)
T PLN02193 2 AQKLEAKGGETGDVWDDGVYDNVRKVYVGQGQYGIAFVKFEYVNGSQVVVGDEHGKKTE 60 (470)
T ss_pred ceeeccccCCCCCcCcCCCcCCeEEEEEEeCCCEEEEEEEEEeCCCcEEEeccCCCCCC
Confidence 4799999999999999999999999999999 599999999999999888888998764
No 2
>PF01419 Jacalin: Jacalin-like lectin domain; InterPro: IPR001229 This entry represents a mannose-binding lectin domain with a beta-prism fold consisting of three 4-stranded beta-sheets, with an internal pseudo 3-fold symmetry. Some lectins in this group stimulate distinct T- and B- cell functions, such as Jacalin, which binds to the T-antigen and acts as an agglutinin. This domain is found in 1 to 6 copies in lectins. The domain is also found in the salt-stress induced protein from rice and an animal prostatic spermine-binding protein. Proteins containing this domain include: Jacalin, a tetrameric plant seed lectin and agglutinin from Artocarpus heterophyllus (jackfruit), which is specific for galactose []. Artocarpin, a tetrameric plant seed lectin from A. heterophyllus []. Lectin MPA, a tetrameric plant seed lectin and agglutinin from Maclura pomifera (Osage orange), []. Heltuba lectin, a plant seed lectin and agglutinin from Helianthus tuberosus (Jerusalem artichoke) []. Agglutinin from Calystegia sepium (Hedge bindweed) []. Griffithsin, an anti-viral lectin from red algae (Griffithsia species) []. ; PDB: 2GUE_B 2HYR_A 2GTY_B 2HYQ_B 3LKY_A 2GUC_B 2GUD_A 2NUO_B 2NU5_B 3LL2_A ....
Probab=98.78 E-value=5.8e-09 Score=66.90 Aligned_cols=47 Identities=49% Similarity=1.099 Sum_probs=41.6
Q ss_pred CcccccCCCCCEEEEEEEeC-CcEeEEEEEEccCCCEEEcCCCCCCCC
Q 043505 24 GARWDDGVFSSVRQVVISYG-AGIDSILIEYDKKGSSVWSDKHGGSGG 70 (75)
Q Consensus 24 G~~wDdg~~~~v~~I~I~~~-~~I~si~f~Yd~~G~~~~~~~~Gg~gG 70 (75)
|+.|||+.+++|++|.|.++ +.|++|||.|++.+..+++..||+.++
T Consensus 1 g~~~d~g~~~~v~~i~v~~~~~~I~~Iq~~Y~~~~g~~~~~~~G~~~g 48 (130)
T PF01419_consen 1 GDSWDDGGHDGVKKIVVIYGGDGIDGIQFTYDDGGGQVWGQQHGGNGG 48 (130)
T ss_dssp SEEEEEECSSEEEEEEEEEESSSEEEEEEEEEETTEEEEEEEEECSSS
T ss_pred CCcccCCCCCCCEEEEEEECCCEEEEEEEEEECCCceEEeeccCcccc
Confidence 68999999999999999988 799999999976666778888999877
No 3
>PF01419 Jacalin: Jacalin-like lectin domain; InterPro: IPR001229 This entry represents a mannose-binding lectin domain with a beta-prism fold consisting of three 4-stranded beta-sheets, with an internal pseudo 3-fold symmetry. Some lectins in this group stimulate distinct T- and B- cell functions, such as Jacalin, which binds to the T-antigen and acts as an agglutinin. This domain is found in 1 to 6 copies in lectins. The domain is also found in the salt-stress induced protein from rice and an animal prostatic spermine-binding protein. Proteins containing this domain include: Jacalin, a tetrameric plant seed lectin and agglutinin from Artocarpus heterophyllus (jackfruit), which is specific for galactose []. Artocarpin, a tetrameric plant seed lectin from A. heterophyllus []. Lectin MPA, a tetrameric plant seed lectin and agglutinin from Maclura pomifera (Osage orange), []. Heltuba lectin, a plant seed lectin and agglutinin from Helianthus tuberosus (Jerusalem artichoke) []. Agglutinin from Calystegia sepium (Hedge bindweed) []. Griffithsin, an anti-viral lectin from red algae (Griffithsia species) []. ; PDB: 2GUE_B 2HYR_A 2GTY_B 2HYQ_B 3LKY_A 2GUC_B 2GUD_A 2NUO_B 2NU5_B 3LL2_A ....
Probab=84.56 E-value=2.3 Score=26.77 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=32.8
Q ss_pred EEceeeCCCCcccccCCC--CCEEEEEEEeCCcEeEEEEEE
Q 043505 15 TVGPWGGQNGARWDDGVF--SSVRQVVISYGAGIDSILIEY 53 (75)
Q Consensus 15 KiGpwGG~GG~~wDdg~~--~~v~~I~I~~~~~I~si~f~Y 53 (75)
+..|+|+.+|.++...+. ..|..+.=+++..|++|-|.|
T Consensus 88 ~~~~~gg~~g~~F~~~~~~~~~ivGF~G~~g~~ld~iG~y~ 128 (130)
T PF01419_consen 88 RYSPFGGSGGTKFSLPVPEGGQIVGFFGRSGDYLDSIGVYF 128 (130)
T ss_dssp EEEEEECSCSEEEEEEESESEEEEEEEEEESSSEEEEEEEE
T ss_pred cccCcccccCCEEEEeecCCCEEEEEEEEcCCeEEEEEEEE
Confidence 567788899999987653 688888888999999999987
No 4
>KOG4525 consensus Jacalin-like lectin domain-containing protein [General function prediction only]
Probab=57.81 E-value=19 Score=29.08 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=32.7
Q ss_pred CCCCcccccCCC--CCEEEEEEEeCCcEeEEEEEE-ccCCCEEEcCCCCCCCCccCCC
Q 043505 21 GQNGARWDDGVF--SSVRQVVISYGAGIDSILIEY-DKKGSSVWSDKHGGSGGFKTNK 75 (75)
Q Consensus 21 G~GG~~wDdg~~--~~v~~I~I~~~~~I~si~f~Y-d~~G~~~~~~~~Gg~gG~~~~~ 75 (75)
|.+|++-..-.+ .-++.|.|+++-+.|+|.|.| ++ +-..|...|++|++
T Consensus 491 ~~~gkei~lia~~~r~it~ir~~cg~aldg~~~~ygeE------svl~g~~~~s~hdf 542 (614)
T KOG4525|consen 491 GCNGKEIRLIAPSSRPITLIRLRCGQALDGLVAHYGEE------SVLEGPYVGSPHDF 542 (614)
T ss_pred CCCCceeeeeccccccceEEEEeccccccceEEEeccc------ceeecccCCCccce
Confidence 345665542222 578899999999999999999 43 33445556666553
No 5
>PF01289 Thiol_cytolysin: Thiol-activated cytolysin; InterPro: IPR001869 Thiol-activated cytolysins [] are toxins produced by a variety of Gram-positive bacteria and are characterised by their ability to lyse cholesterol-containing membranes, their reversible inactivation by oxidation and their capacity to bind to cholesterol. All these proteins contain a single cysteine residue, located in their C-terminal section, which has been shown [] to be essential for the binding to cholesterol.; GO: 0015485 cholesterol binding, 0009405 pathogenesis; PDB: 1S3R_A 1M3I_A 1PFO_A 1M3J_B 3CQF_A 3HVN_A.
Probab=34.70 E-value=61 Score=25.71 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=22.3
Q ss_pred EEEEEeC-CcEeEEEE-----EEccCCCEE-EcCCCCCCCCcc
Q 043505 37 QVVISYG-AGIDSILI-----EYDKKGSSV-WSDKHGGSGGFK 72 (75)
Q Consensus 37 ~I~I~~~-~~I~si~f-----~Yd~~G~~~-~~~~~Gg~gG~~ 72 (75)
+|++.|. .-|..+.+ .||++|+.+ +...|-+++..+
T Consensus 361 ~i~l~h~g~yva~~~~~w~e~~yd~~g~~~~~~~~w~~~~~~~ 403 (467)
T PF01289_consen 361 KITLDHSGAYVAQFNVTWDEVSYDENGNEVITHKTWEGNGKDR 403 (467)
T ss_dssp EEEEEEECSSEEEEEEEEEEEEE-TTS-EEEEEEE-TTTT-EE
T ss_pred cEEEecCCcEEEEEEEEeeecccCCCCCEEeeeeccCCCCccc
Confidence 6777666 67777766 477888877 555688876554
No 6
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=34.14 E-value=67 Score=16.07 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=17.4
Q ss_pred CCEEEEEEEeCCcEeEEEEEEccCCCEEEc
Q 043505 33 SSVRQVVISYGAGIDSILIEYDKKGSSVWS 62 (75)
Q Consensus 33 ~~v~~I~I~~~~~I~si~f~Yd~~G~~~~~ 62 (75)
.+|.+++-..+... +|.||..|++...
T Consensus 5 G~l~~~~d~~G~~~---~y~YD~~g~l~~~ 31 (38)
T PF05593_consen 5 GRLTSVTDPDGRTT---RYTYDAAGRLTSV 31 (38)
T ss_pred CCEEEEEcCCCCEE---EEEECCCCCEEEE
Confidence 46777763333333 7999988987654
No 7
>PF05171 HemS: Haemin-degrading HemS.ChuX domain; InterPro: IPR007845 The Yersinia enterocolitica O:8 periplasmic binding protein-dependent transport system consisted of four proteins: the periplasmic haemin-binding protein HemT, the haemin permease protein HemU, the ATP-binding hydrophilic protein HemV and the haemin-degrading protein HemS. The structure for HemS has been solved and consists of a tandem repeat of the domain represented in this entry[].; GO: 0006826 iron ion transport; PDB: 2HQ2_A 2J0R_A 2J0P_A 1U9T_A.
Probab=34.00 E-value=49 Score=21.01 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=28.7
Q ss_pred EEEceeeCCCCcccccCCC-CCEEEEEEEeC----CcEeEEEEEEccCCCEEEc
Q 043505 14 VTVGPWGGQNGARWDDGVF-SSVRQVVISYG----AGIDSILIEYDKKGSSVWS 62 (75)
Q Consensus 14 ~KiGpwGG~GG~~wDdg~~-~~v~~I~I~~~----~~I~si~f~Yd~~G~~~~~ 62 (75)
...|||+=-=+..+|--.+ .++.++.+... ..+.||+| ||.+|+.+..
T Consensus 58 ~~~g~~~~vl~~~~~L~l~~~~~~~~w~v~~~~~~g~~~Slq~-fD~~G~~i~k 110 (129)
T PF05171_consen 58 RRMGPWLNVLDPGFDLRLFFSHWASAWAVREPTRDGVRTSLQF-FDAQGEAIHK 110 (129)
T ss_dssp EECTTEEEEE-TTEEEEEEGGGEEEEEEEEEEETTSEEEEEEE-EETTS-EEEE
T ss_pred eccCCEEEEECCCceEEEehhheeEEEEEEecCCCCcEEEEEE-ECCCCCEEEE
Confidence 3456666433333555444 67778776533 25889888 5888887654
No 8
>PF07080 DUF1348: Protein of unknown function (DUF1348); InterPro: IPR009783 This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.; PDB: 2IMJ_B.
Probab=33.98 E-value=95 Score=21.03 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=14.3
Q ss_pred EEEEEEEeCCcEeEEEEEE---ccCCCE
Q 043505 35 VRQVVISYGAGIDSILIEY---DKKGSS 59 (75)
Q Consensus 35 v~~I~I~~~~~I~si~f~Y---d~~G~~ 59 (75)
++++.-..++.| +++|.| |.+|+=
T Consensus 71 iKELwaf~~nRI-AVRF~YE~~d~~gqW 97 (143)
T PF07080_consen 71 IKELWAFTDNRI-AVRFAYEWHDDSGQW 97 (143)
T ss_dssp EEEEEEEETTEE-EEEEEEEEE-TTS-E
T ss_pred HHhhhhccCCeE-EEEEeEEEEcCCCCE
Confidence 344555556777 889977 566663
No 9
>PF11454 DUF3016: Protein of unknown function (DUF3016); InterPro: IPR021557 This is a bacterial family of uncharacterised proteins.
Probab=33.73 E-value=76 Score=21.21 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=14.6
Q ss_pred EEeCCcEeEEEEEE---ccCCCEEEcC
Q 043505 40 ISYGAGIDSILIEY---DKKGSSVWSD 63 (75)
Q Consensus 40 I~~~~~I~si~f~Y---d~~G~~~~~~ 63 (75)
|-.+--.=.|.|+| |.+|+.+..+
T Consensus 79 vvkdi~pPRI~l~Y~L~d~~G~vi~~g 105 (141)
T PF11454_consen 79 VVKDIYPPRIELSYTLTDADGKVIKQG 105 (141)
T ss_pred EEccCCCCcEEEEEEEECCCCcEEEec
Confidence 33444445677777 4788876653
No 10
>PF09697 Porph_ging: Protein of unknown function (Porph_ging); InterPro: IPR019115 This family of proteins of unknown function is found in species belonging to the bacteroidetes.
Probab=28.73 E-value=26 Score=20.76 Aligned_cols=18 Identities=28% Similarity=0.645 Sum_probs=15.9
Q ss_pred cceeeeeccCcEEEceee
Q 043505 3 SYERYEVEDDHVTVGPWG 20 (75)
Q Consensus 3 ~~~~y~~~~~~~KiGpwG 20 (75)
.+.|+|++.-|+..|||.
T Consensus 43 ~~~AWyT~eIPv~~GP~~ 60 (70)
T PF09697_consen 43 TIEAWYTPEIPVSFGPWK 60 (70)
T ss_pred EEEEEECCCCCCcCCChh
Confidence 568999999999999984
No 11
>PF10622 Ehbp: Energy-converting hydrogenase B subunit P (EhbP); InterPro: IPR019597 Ehb (energy-converting hydrogenase B) is an methanogenic archaeal enzyme that functions in one of the metabolic pathways involved in methanol reduction to methane. This entry contains subunit P of Ehb.
Probab=26.27 E-value=28 Score=21.26 Aligned_cols=11 Identities=36% Similarity=0.329 Sum_probs=9.4
Q ss_pred Cccceeeeecc
Q 043505 1 MMSYERYEVED 11 (75)
Q Consensus 1 ~~~~~~y~~~~ 11 (75)
|||||-|.++.
T Consensus 6 ~mslGGYI~Et 16 (78)
T PF10622_consen 6 TMSLGGYIRET 16 (78)
T ss_pred EEeeccEEEec
Confidence 69999999865
No 12
>PLN02193 nitrile-specifier protein
Probab=25.20 E-value=2.7e+02 Score=21.34 Aligned_cols=43 Identities=14% Similarity=-0.042 Sum_probs=27.4
Q ss_pred ccccCCCCCEEEEEEEeC-------CcEeEEEEEEccCCCEEEcCCCCCCCCc
Q 043505 26 RWDDGVFSSVRQVVISYG-------AGIDSILIEYDKKGSSVWSDKHGGSGGF 71 (75)
Q Consensus 26 ~wDdg~~~~v~~I~I~~~-------~~I~si~f~Yd~~G~~~~~~~~Gg~gG~ 71 (75)
++.....+-|++|.-+++ ..|.||+|.-.+ |+ +++++|...|.
T Consensus 65 ~~~~~~~e~~~~v~g~~~~~~~~~~~~i~~l~f~t~~-~~--~~~~~g~~~g~ 114 (470)
T PLN02193 65 EFEIDADDYIVYVEGYREKVNDMTSEMITFLSFKTYK-GK--TSHPIEKRPGV 114 (470)
T ss_pred EEEECCCCcEEEEEEEecCcCCCCceeEEEEEEEeCC-Cc--cccccccCCCC
Confidence 455454478899877765 269999996422 22 35677765554
No 13
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=23.82 E-value=1.1e+02 Score=15.11 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=11.4
Q ss_pred EEEEEEccCCCEEEc
Q 043505 48 SILIEYDKKGSSVWS 62 (75)
Q Consensus 48 si~f~Yd~~G~~~~~ 62 (75)
..+|.||..|+.+..
T Consensus 17 ~~~~~YD~~Grl~~~ 31 (42)
T TIGR01643 17 TTRYTYDAAGRLVEI 31 (42)
T ss_pred EEEEEECCCCCEEEE
Confidence 467999988887654
No 14
>PF15283 DUF4595: Domain of unknown function (DUF4595) with porin-like fold
Probab=21.78 E-value=2.6e+02 Score=18.91 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=20.0
Q ss_pred CEEEEEE-EeCCcEeEEEEEEccCCCEEEc
Q 043505 34 SVRQVVI-SYGAGIDSILIEYDKKGSSVWS 62 (75)
Q Consensus 34 ~v~~I~I-~~~~~I~si~f~Yd~~G~~~~~ 62 (75)
.|++... ..+...+...|+|+.+|+.+..
T Consensus 58 ~v~~~~~~~~~~~~~t~~FtYn~~~qL~~i 87 (197)
T PF15283_consen 58 YVTSCVSQDYEGYTDTYTFTYNADGQLTKI 87 (197)
T ss_pred cEEEEEEEccCCCEEEEEEEECCCCceEEE
Confidence 4555555 3446788888999888886654
No 15
>PF14408 Actino_peptide: Ribosomally synthesized peptide in actinomycetes
Probab=20.87 E-value=1.5e+02 Score=17.04 Aligned_cols=24 Identities=33% Similarity=0.399 Sum_probs=17.7
Q ss_pred eEEEEEEccCCCEEEcCCCCCCCC
Q 043505 47 DSILIEYDKKGSSVWSDKHGGSGG 70 (75)
Q Consensus 47 ~si~f~Yd~~G~~~~~~~~Gg~gG 70 (75)
..+.+.+|..|..+..++||...+
T Consensus 12 TQ~~v~~D~~G~~vemgkHgTst~ 35 (59)
T PF14408_consen 12 TQTGVYVDRDGPVVEMGKHGTSTG 35 (59)
T ss_pred ceeeEEEcCCCCceeccccccccc
Confidence 345556688899889999986654
No 16
>PF08918 PhoQ_Sensor: PhoQ Sensor; InterPro: IPR015014 The PhoQ Sensor is required for the virulence of various Gram-negative bacteria by allowing interaction of PhoPQ with the intracellular membrane, resulting in remodelling of the bacterial cell surface and subsequent bacterial resistance to host antimicrobial peptides. The domain contains a major flat acidic surface, which binds to at least 3 calcium ions, neutralising the domain's negative charge and allowing interaction with the negatively charged membrane []. ; GO: 0004673 protein histidine kinase activity, 0005524 ATP binding, 0046872 metal ion binding, 0000160 two-component signal transduction system (phosphorelay), 0018106 peptidyl-histidine phosphorylation, 0016020 membrane; PDB: 1YAX_D 3BQA_B 3BQ8_B.
Probab=20.60 E-value=1.2e+02 Score=21.27 Aligned_cols=20 Identities=20% Similarity=0.710 Sum_probs=15.0
Q ss_pred cEeEEEEEEccCCCEEEcCC
Q 043505 45 GIDSILIEYDKKGSSVWSDK 64 (75)
Q Consensus 45 ~I~si~f~Yd~~G~~~~~~~ 64 (75)
.--++-|-||++|+..|+.+
T Consensus 72 n~ptL~~IYD~~G~lLW~qr 91 (180)
T PF08918_consen 72 NSPTLVLIYDENGKLLWRQR 91 (180)
T ss_dssp T-SEEEEEEETTS-EEEESS
T ss_pred CCCeEEEEEcCCCcEEEecC
Confidence 34578899999999998865
Done!