BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043507
(88 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FE4|A Chain A, Crystal Structure Of Mercury-Hah1
pdb|1FE4|B Chain B, Crystal Structure Of Mercury-Hah1
pdb|1FEE|A Chain A, Crystal Structure Of Copper-Hah1
pdb|1FEE|B Chain B, Crystal Structure Of Copper-Hah1
pdb|1FE0|A Chain A, Crystal Structure Of Cadmium-Hah1
pdb|1FE0|B Chain B, Crystal Structure Of Cadmium-Hah1
pdb|1TL4|A Chain A, Solution Structure Of Cu(i) Hah1
pdb|1TL5|A Chain A, Solution Structure Of Apohah1
pdb|2K1R|B Chain B, The Solution Nmr Structure Of The Complex Between Mnk1
And Hah1 Mediated By Cu(I)
pdb|3IWL|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Monomer)
pdb|3IWX|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
pdb|3IWX|B Chain B, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
Length = 68
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 7 LKVDMSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKAGKKTAF 66
VDM+C GC AV RVL K+ GV+ +DIDL +KV ++ D +L T+ K GK ++
Sbjct: 6 FSVDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSY 64
Query: 67 WEEE 70
E
Sbjct: 65 LGLE 68
>pdb|3CJK|A Chain A, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 68
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 7 LKVDMSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKAGKKTAF 66
VDM+C GC AV RVL K+ GV+ +DIDL +KV ++ D +L T+ K GK ++
Sbjct: 5 FSVDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSY 63
Query: 67 WEEE 70
E
Sbjct: 64 LGLE 67
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 9 VDMSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKAGKKTAFWE 68
+ M CE C +K L + G+ + + D+++Q ++V+ +V P ++ T+ GK
Sbjct: 13 IPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRG 72
Query: 69 EEKPASA 75
KP S+
Sbjct: 73 AGKPNSS 79
>pdb|1CC7|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|1CC8|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|2GGP|A Chain A, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
pdb|1FES|A Chain A, Solution Structure Of The Apo Form Of The Yeast
Metallochaperone, Atx1
pdb|3K7R|A Chain A, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|B Chain B, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|C Chain C, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|D Chain D, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|E Chain E, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|F Chain F, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|G Chain G, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|H Chain H, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|I Chain I, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|J Chain J, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|K Chain K, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|L Chain L, Crystal Structure Of [tm][cuatx1]3
Length = 73
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 7 LKVDMSCEGCYGAVKRVLGKMD-GVETFDIDLKEQKVTVKGNVQPDAVLQTVSKAGK 62
V M+C GC GAV +VL K++ V DI L++Q V V + D +L+ + K GK
Sbjct: 9 FNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGK 65
>pdb|1FD8|A Chain A, Solution Structure Of The Cu(I) Form Of The Yeast
Metallochaperone, Atx1
Length = 73
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 7 LKVDMSCEGCYGAVKRVLGKMD-GVETFDIDLKEQKVTVKGNVQPDAVLQTVSKAGK 62
V M+C GC GAV +VL K++ V DI L++Q V V + D +L+ + K GK
Sbjct: 9 FNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGK 65
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 7 LKVD-MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKAGKK 63
LKV+ M+C C AV + L K+ GVE ++ L++ + V+G P A++Q V + G K
Sbjct: 4 LKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYK 61
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 1 MSQTVVLKVD-MSCEGCYGAVKRVLGKMDGVETFDID--LKEQKVTVKGNVQPDAVLQTV 57
M+QT+ L+++ M C C +++R + K+ GV++ ++ L++ V+ G P + V
Sbjct: 1 MAQTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAV 60
Query: 58 SKAGKKTAFWEEE 70
+AG +++
Sbjct: 61 ERAGYHARVLKQQ 73
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 1 MSQTVVLKVD-MSCEGCYGAVKRVLGKMDGVETFDID--LKEQKVTVKGNVQPDAVLQTV 57
M+QT+ L+++ M C C +++R + K+ GV++ ++ L++ V+ G P + V
Sbjct: 1 MAQTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAV 60
Query: 58 SKAG 61
+AG
Sbjct: 61 ERAG 64
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 2 SQTVVLKVD-MSCEGCYGAVKRVLGKMDGVETFDID--LKEQKVTVKGNVQPDAVLQTVS 58
+QT+ L+++ M C C +++R + K+ GV++ ++ L++ V+ G P + V
Sbjct: 1 AQTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVE 60
Query: 59 KAG 61
+AG
Sbjct: 61 RAG 63
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 1 MSQTVVLKVD-MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSK 59
M++ V +VD +SC C +R + +++GV ++ K+TV G +A +Q V +
Sbjct: 1 MAEKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTG----EASIQQVEQ 56
Query: 60 AG 61
AG
Sbjct: 57 AG 58
>pdb|2QIF|A Chain A, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|2QIF|B Chain B, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|3I9Z|A Chain A, Crystal Structure Of A Metallochaperone With A
Trinuclear Cu(I) Cluster
Length = 69
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 11 MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTV 44
MSC+ C AV+ +G++DGV ++L+ KV V
Sbjct: 11 MSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDV 44
>pdb|1P8G|A Chain A, The Solution Structure Of Apo Copz From Bacillus
Subtilis
pdb|1K0V|A Chain A, Copper Trafficking: The Solution Structure Of Bacillus
Subtilis Copz
Length = 73
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 11 MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTV 44
MSC+ C AV+ +G++DGV ++L+ KV V
Sbjct: 11 MSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDV 44
>pdb|4A46|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 11 MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKAGKK 63
++CE C AV + + D T +DL +KVT+ + + + ++ AG +
Sbjct: 9 IACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHE 61
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 2 SQTVVLKVD-MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTV 44
+QTV L V M+C C VK+ L K++GV D+ ++++ V
Sbjct: 2 TQTVTLAVPGMTCAACPITVKKALSKVEGVSKVDVGFEKREAVV 45
>pdb|1SB6|A Chain A, Solution Structure Of A Cyanobacterial Copper
Metallochaperone, Scatx1
pdb|2XMT|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMT|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMU|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMU|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMJ|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMJ|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMK|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
pdb|2XMK|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
Length = 64
Score = 30.8 bits (68), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 11 MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKAGKK 63
++CE C AV + + D T +DL +KVT+ + + + ++ AG +
Sbjct: 10 IACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHE 62
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 4 TVVLKVDMSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKAGKK 63
T+ V M+C+ C AV++ L + GV+ ++ L++Q V V + V + G++
Sbjct: 20 TLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQ 79
Query: 64 TAF 66
Sbjct: 80 AVL 82
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 2 SQTVVLKVD-MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTV 44
+QTV L V M+C C VK+ + K++GV D+ + ++ V
Sbjct: 2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVV 45
>pdb|1KVI|A Chain A, Solution Structure Of The Reduced Form Of The First
Heavy Metal Binding Motif Of The Menkes Protein
pdb|1KVJ|A Chain A, Solution Structure Of The Cu(I) Bound Form Of The First
Heavy Metal Binding Motif Of The Menkes Protein
Length = 79
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 11 MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTV 44
M+C C +++ +GK++GV + L+E+ T+
Sbjct: 17 MTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATI 50
>pdb|3CJK|B Chain B, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 75
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 11 MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTV 44
M+C C +++ +GK++GV + L+E+ T+
Sbjct: 11 MTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATI 44
>pdb|2XMV|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|C Chain C, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|D Chain D, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|E Chain E, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|F Chain F, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMM|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
pdb|2XMM|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
Length = 64
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 11 MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKAG 61
++CE C AV + + D T +DL +KVT+ + + + ++ AG
Sbjct: 10 IACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAG 60
>pdb|2K1R|A Chain A, The Solution Nmr Structure Of The Complex Between Mnk1
And Hah1 Mediated By Cu(I)
Length = 73
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 11 MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTV 44
M+C C +++ +GK++GV + L+E+ T+
Sbjct: 13 MTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATI 46
>pdb|1Q8L|A Chain A, Second Metal Binding Domain Of The Menkes Atpase
Length = 84
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 5 VVLKVD---MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTV 44
VVLK+ M+C C ++ +GK+ GV+ + L Q+ T+
Sbjct: 9 VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATI 51
>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
Length = 202
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 2 SQTVVLKVDMSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTVKGN 47
S T++ M+C C +++ ++ +++GV+ + L E TV N
Sbjct: 122 STTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYN 167
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 4 TVVLKVD-MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTVK 45
T+ L++D M C+ C ++ +G++ GV++ + L+ + VK
Sbjct: 21 TLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVK 63
>pdb|1S6O|A Chain A, Solution Structure And Backbone Dynamics Of The Apo-Form
Of The Second Metal-Binding Domain Of The Menkes
Protein Atp7a
pdb|1S6U|A Chain A, Solution Structure And Backbone Dynamics Of The Cu(I)
Form Of The Second Metal-Binding Domain Of The Menkes
Protein Atp7a
Length = 76
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 5 VVLKVD---MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTV 44
VVLK+ M+C C ++ +GK+ GV+ + L Q+ T+
Sbjct: 3 VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATI 45
>pdb|4A47|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 11 MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKAGKK 63
M C C AV + + D T +DL +KVT+ + + + ++ AG +
Sbjct: 9 MDCTSCAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHE 61
>pdb|2A4K|A Chain A, 3-Oxoacyl-[acyl Carrier Protein] Reductase From Thermus
Thermophilus Tt0137
pdb|2A4K|B Chain B, 3-Oxoacyl-[acyl Carrier Protein] Reductase From Thermus
Thermophilus Tt0137
Length = 263
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 4 TVVLKVDMSCEGCYGAVKRVLGKMDGV---ETFDIDLKEQKVTVKGNVQPDAVLQTVSKA 60
++VL ++ G +G GK+ V T ++L + V V NV ++QT A
Sbjct: 131 SLVLTGSVAGLGAFGLAHYAAGKLGVVGLARTLALELARKGVRV--NVLLPGLIQTPMTA 188
Query: 61 GKKTAFWEEEKPASAESDSKPTEAVAAA 88
G WE+E AS + E VA A
Sbjct: 189 GLPPWAWEQEVGASPLGRAGRPEEVAQA 216
>pdb|2RGH|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
Length = 571
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 14 EGCYGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKAGKK-TAFWEEEKP 72
EG ++++L + G+ET +ID K+ +++ GN P + +TV++ K+ A EE+
Sbjct: 402 EGALRLIRQLLKEEYGIETKEIDSKKYQIS-GGNFDPTKLEETVTELAKEGVAAGLEEED 460
Query: 73 ASAESDSKPTEA 84
A+ +D T A
Sbjct: 461 ATYIADFYGTNA 472
>pdb|1AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
pdb|2AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
Length = 72
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 1 MSQTVVLKVD-MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTVK 45
++Q V+ +D M+C C +++ V+ K GV++ + L TV+
Sbjct: 1 LTQETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVE 46
>pdb|2RGO|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
pdb|2RGO|B Chain B, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
Length = 607
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 13 CEGCYGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKAGKK-TAFWEEEK 71
EG ++++L + G+ET +ID K+ +++ GN P + +TV++ K+ A EE+
Sbjct: 437 AEGALRLIRQLLKEEYGIETKEIDSKKYQIS-GGNFDPTKLEETVTELAKEGVAAGLEEE 495
Query: 72 PASAESDSKPTEA 84
A+ +D T A
Sbjct: 496 DATYIADFYGTNA 508
>pdb|1Y3K|A Chain A, Solution Structure Of The Apo Form Of The Fifth Domain
Of Menkes Protein
pdb|1Y3J|A Chain A, Solution Structure Of The Copper(I) Form Of The Fifth
Domain Of Menkes Protein
Length = 77
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 11 MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTVKGN---VQPDAVLQTVSKAG 61
M+C C ++R L + +G+ + + L K V+ N +QP + + + + G
Sbjct: 12 MTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELG 65
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 11 MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTVKGN 47
M+C C +++ L K++GV ++ + VTV+ N
Sbjct: 83 MTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYN 119
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 11 MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTVKGN 47
M+C C +++ L K++GV ++ + VTV+ N
Sbjct: 83 MTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYN 119
>pdb|2KT2|A Chain A, Structure Of Nmera, The N-Terminal Hma Domain Of Tn501
Mercuric Reductase
pdb|2KT3|A Chain A, Structure Of Hg-Nmera, Hg(Ii) Complex Of The N-Terminal
Domain Of Tn501 Mercuric Reductase
Length = 69
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 11 MSCEGCYGAVKRVLGKMDGVETFDIDLKE---QKVTVKGNVQPDAVLQTVSKAGKKTAFW 67
M+C+ C VK L K+ GV++ + + Q V G PDA+ V+ G K
Sbjct: 9 MTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGT-SPDALTAAVAGLGYKATLA 67
Query: 68 E 68
+
Sbjct: 68 D 68
>pdb|2VOY|A Chain A, Cryoem Model Of Copa, The Copper Transporting Atpase
From Archaeoglobus Fulgidus
pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis
Length = 80
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 11 MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTVKGN 47
M+C C +++ L K++GV ++ + VTV+ N
Sbjct: 12 MTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYN 48
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis In The Cu(I)loaded State
Length = 80
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 11 MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTVKGN 47
M+C C +++ L K++GV ++ + VTV+ N
Sbjct: 12 MTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYN 48
>pdb|2L3M|A Chain A, Solution Structure Of The Putative Copper-Ion-Binding
Protein From Bacillus Anthracis Str. Ames
Length = 71
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 11 MSCEGCYGAVKRVLGKMDGVETFDIDLKEQKVTV 44
MSC C A++ + +++GVE + L E V V
Sbjct: 14 MSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEV 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.124 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,399,949
Number of Sequences: 62578
Number of extensions: 78465
Number of successful extensions: 262
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 41
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)