Query 043511
Match_columns 300
No_of_seqs 201 out of 1403
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:46:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02877 GH18_hevamine_XipI_cla 100.0 4.3E-67 9.4E-72 482.6 27.1 271 28-298 1-280 (280)
2 KOG4701 Chitinase [Cell wall/m 100.0 1.5E-64 3.2E-69 465.7 21.0 277 20-297 20-310 (568)
3 cd02871 GH18_chitinase_D-like 100.0 6.4E-49 1.4E-53 368.1 26.3 256 28-298 1-311 (312)
4 cd06546 GH18_CTS3_chitinase GH 100.0 1.8E-47 4E-52 348.8 25.3 234 29-286 1-255 (256)
5 cd06544 GH18_narbonin Narbonin 100.0 2.3E-38 5E-43 288.1 19.0 237 30-287 2-253 (253)
6 cd06545 GH18_3CO4_chitinase Th 100.0 2E-37 4.3E-42 282.2 22.8 235 30-292 1-247 (253)
7 cd02879 GH18_plant_chitinase_c 100.0 8.1E-36 1.8E-40 278.0 21.1 244 28-291 3-297 (299)
8 COG3469 Chitinase [Carbohydrat 100.0 5.1E-35 1.1E-39 258.2 18.5 247 22-288 21-308 (332)
9 cd06548 GH18_chitinase The GH1 100.0 1.5E-33 3.2E-38 265.2 20.4 245 30-287 1-322 (322)
10 cd02878 GH18_zymocin_alpha Zym 100.0 2.4E-31 5.1E-36 252.6 20.3 195 29-249 1-242 (345)
11 cd02873 GH18_IDGF The IDGF's ( 100.0 7E-31 1.5E-35 254.7 22.7 205 29-249 1-275 (413)
12 cd00598 GH18_chitinase-like Th 100.0 2.4E-30 5.2E-35 227.7 17.4 195 30-287 1-210 (210)
13 cd02872 GH18_chitolectin_chito 100.0 3.8E-30 8.2E-35 245.4 19.6 203 30-249 1-244 (362)
14 COG3325 ChiA Chitinase [Carboh 100.0 1.1E-30 2.3E-35 246.7 14.7 213 27-250 37-315 (441)
15 smart00636 Glyco_18 Glycosyl h 100.0 2E-29 4.3E-34 237.6 21.1 202 29-249 1-237 (334)
16 PF00704 Glyco_hydro_18: Glyco 100.0 3.1E-30 6.7E-35 242.6 10.8 210 28-249 1-245 (343)
17 KOG2806 Chitinase [Carbohydrat 100.0 1.4E-27 3.1E-32 232.7 19.2 204 28-248 52-297 (432)
18 cd02876 GH18_SI-CLP Stabilin-1 99.9 8.1E-27 1.8E-31 219.1 19.0 204 29-250 4-231 (318)
19 cd06542 GH18_EndoS-like Endo-b 99.9 2.8E-26 6.1E-31 208.8 18.0 223 29-288 2-242 (255)
20 cd02874 GH18_CFLE_spore_hydrol 99.9 6.1E-24 1.3E-28 199.0 22.4 193 29-249 3-219 (313)
21 cd02875 GH18_chitobiase Chitob 99.9 5.7E-23 1.2E-27 196.1 16.5 148 89-249 68-234 (358)
22 cd06543 GH18_PF-ChiA-like PF-C 99.9 8.5E-22 1.8E-26 183.0 17.4 229 41-289 15-267 (294)
23 cd06549 GH18_trifunctional GH1 99.9 4.8E-20 1E-24 171.9 19.4 196 30-250 2-212 (298)
24 COG3858 Predicted glycosyl hyd 98.9 1.2E-08 2.6E-13 97.3 13.3 151 89-251 151-325 (423)
25 PF02638 DUF187: Glycosyl hydr 97.1 0.0033 7.1E-08 59.2 9.3 153 84-249 69-298 (311)
26 cd06547 GH85_ENGase Endo-beta- 96.5 0.003 6.5E-08 60.2 4.3 75 89-173 50-136 (339)
27 KOG2091 Predicted member of gl 94.9 0.19 4.2E-06 47.1 9.3 151 115-285 164-336 (392)
28 PF03644 Glyco_hydro_85: Glyco 93.6 0.069 1.5E-06 50.3 3.7 74 89-172 46-131 (311)
29 TIGR01370 cysRS possible cyste 90.0 0.93 2E-05 42.9 6.8 22 88-109 84-107 (315)
30 TIGR02402 trehalose_TreZ malto 88.8 5.3 0.00011 40.6 11.7 25 81-105 156-180 (542)
31 PF11340 DUF3142: Protein of u 88.6 3.5 7.6E-05 35.8 8.7 92 144-249 41-138 (181)
32 PF13200 DUF4015: Putative gly 85.9 14 0.0003 35.0 11.9 70 142-213 134-229 (316)
33 PRK12568 glycogen branching en 83.4 17 0.00036 38.5 12.2 60 45-105 277-339 (730)
34 PRK05402 glycogen branching en 82.8 16 0.00036 38.4 12.1 61 45-105 273-335 (726)
35 PRK12313 glycogen branching en 81.7 20 0.00043 37.1 12.1 26 80-105 215-240 (633)
36 TIGR01515 branching_enzym alph 80.1 26 0.00055 36.2 12.1 24 82-105 203-226 (613)
37 PRK14706 glycogen branching en 78.1 19 0.00041 37.5 10.4 62 43-105 173-237 (639)
38 COG1649 Uncharacterized protei 76.0 4.4 9.5E-05 39.8 4.9 153 83-249 113-343 (418)
39 TIGR02104 pulA_typeI pullulana 75.7 15 0.00032 37.9 8.9 21 85-105 229-249 (605)
40 PF14871 GHL6: Hypothetical gl 73.9 8.2 0.00018 31.7 5.3 22 85-106 44-67 (132)
41 PRK03705 glycogen debranching 73.3 7.2 0.00016 40.7 5.9 21 85-105 242-262 (658)
42 PLN02960 alpha-amylase 73.2 17 0.00038 39.0 8.7 24 82-105 463-486 (897)
43 PRK07259 dihydroorotate dehydr 73.0 18 0.00039 33.5 8.1 51 85-156 77-129 (301)
44 TIGR02100 glgX_debranch glycog 71.2 10 0.00023 39.7 6.6 23 83-105 243-265 (688)
45 cd04740 DHOD_1B_like Dihydroor 69.5 18 0.0004 33.3 7.3 52 85-157 75-127 (296)
46 PRK14705 glycogen branching en 68.5 15 0.00032 41.1 7.2 62 44-105 772-835 (1224)
47 cd02932 OYE_YqiM_FMN Old yello 67.9 39 0.00084 31.9 9.2 22 84-105 76-97 (336)
48 TIGR02103 pullul_strch alpha-1 67.4 28 0.00061 37.7 8.9 32 140-171 484-516 (898)
49 PLN02447 1,4-alpha-glucan-bran 66.4 25 0.00055 37.3 8.2 24 82-105 297-320 (758)
50 cd02810 DHOD_DHPD_FMN Dihydroo 66.2 26 0.00057 32.1 7.6 53 84-157 82-136 (289)
51 TIGR02102 pullulan_Gpos pullul 65.9 36 0.00077 37.8 9.5 21 84-104 554-574 (1111)
52 cd06591 GH31_xylosidase_XylS X 65.2 20 0.00043 33.7 6.7 63 84-156 65-160 (319)
53 COG0572 Udk Uridine kinase [Nu 58.4 26 0.00057 31.4 5.7 69 98-173 6-82 (218)
54 PF03537 Glyco_hydro_114: Glyc 58.3 9.8 0.00021 27.9 2.6 22 88-109 39-62 (74)
55 cd02929 TMADH_HD_FMN Trimethyl 55.3 91 0.002 30.0 9.4 22 84-105 82-103 (370)
56 cd02803 OYE_like_FMN_family Ol 55.1 45 0.00098 31.1 7.2 22 84-105 76-97 (327)
57 cd02931 ER_like_FMN Enoate red 54.1 88 0.0019 30.2 9.1 22 84-105 82-103 (382)
58 PLN03244 alpha-amylase; Provis 53.7 71 0.0015 34.2 8.7 24 82-105 438-461 (872)
59 cd06602 GH31_MGAM_SI_GAA This 52.4 41 0.0009 31.9 6.5 64 84-157 63-167 (339)
60 cd02801 DUS_like_FMN Dihydrour 51.1 27 0.00058 30.7 4.7 41 95-156 51-91 (231)
61 cd04734 OYE_like_3_FMN Old yel 50.7 1.2E+02 0.0025 28.9 9.3 21 85-105 77-97 (343)
62 cd02930 DCR_FMN 2,4-dienoyl-Co 49.4 1.4E+02 0.0029 28.5 9.5 22 84-105 76-97 (353)
63 PF00128 Alpha-amylase: Alpha 48.5 21 0.00045 32.1 3.6 27 79-105 46-72 (316)
64 PLN02877 alpha-amylase/limit d 48.1 1.1E+02 0.0023 33.6 9.3 21 85-105 466-486 (970)
65 PF04476 DUF556: Protein of un 47.9 2.2E+02 0.0047 25.9 11.0 124 144-284 19-153 (235)
66 PRK02261 methylaspartate mutas 47.7 76 0.0016 26.1 6.6 100 31-172 34-134 (137)
67 TIGR00736 nifR3_rel_arch TIM-b 47.3 2.2E+02 0.0047 25.7 11.5 98 85-207 55-167 (231)
68 PF10566 Glyco_hydro_97: Glyco 47.1 31 0.00068 32.0 4.6 71 84-171 72-145 (273)
69 KOG2331 Predicted glycosylhydr 45.8 34 0.00073 33.8 4.6 69 94-172 120-198 (526)
70 cd04733 OYE_like_2_FMN Old yel 45.4 1.5E+02 0.0033 28.0 9.1 22 84-105 81-102 (338)
71 COG3325 ChiA Chitinase [Carboh 45.1 17 0.00036 35.8 2.5 29 259-289 397-425 (441)
72 PRK03170 dihydrodipicolinate s 44.5 2.5E+02 0.0055 25.7 10.4 111 84-214 21-137 (292)
73 PF01120 Alpha_L_fucos: Alpha- 43.0 1.4E+02 0.0031 28.3 8.6 81 86-172 139-236 (346)
74 PRK00109 Holliday junction res 41.9 71 0.0015 26.3 5.5 54 227-285 44-98 (138)
75 TIGR00250 RNAse_H_YqgF RNAse H 41.8 79 0.0017 25.7 5.7 52 227-283 38-90 (130)
76 COG1979 Uncharacterized oxidor 41.3 32 0.00069 32.9 3.6 27 83-109 70-96 (384)
77 cd04739 DHOD_like Dihydroorota 41.0 96 0.0021 29.2 7.0 52 84-156 84-136 (325)
78 PF07745 Glyco_hydro_53: Glyco 40.3 3.4E+02 0.0073 25.9 14.8 229 33-287 19-299 (332)
79 smart00642 Aamy Alpha-amylase 40.3 38 0.00083 28.7 3.8 59 46-105 27-90 (166)
80 cd06600 GH31_MGAM-like This fa 40.0 1.1E+02 0.0023 28.8 7.1 64 84-157 63-162 (317)
81 cd02069 methionine_synthase_B1 39.7 30 0.00065 30.7 3.1 26 84-109 153-178 (213)
82 cd04735 OYE_like_4_FMN Old yel 39.4 2E+02 0.0044 27.3 9.0 22 84-105 77-98 (353)
83 PRK14510 putative bifunctional 38.7 1E+02 0.0023 34.6 7.7 23 83-105 245-267 (1221)
84 cd04747 OYE_like_5_FMN Old yel 38.7 2.4E+02 0.0052 27.1 9.4 22 84-105 77-98 (361)
85 TIGR02403 trehalose_treC alpha 38.0 64 0.0014 32.8 5.6 60 45-105 34-95 (543)
86 PRK11815 tRNA-dihydrouridine s 37.6 46 0.001 31.5 4.3 41 96-157 62-102 (333)
87 PLN03231 putative alpha-galact 37.4 2E+02 0.0043 27.8 8.5 53 120-185 161-217 (357)
88 PRK10550 tRNA-dihydrouridine s 37.0 77 0.0017 29.8 5.6 39 98-157 62-100 (312)
89 cd02940 DHPD_FMN Dihydropyrimi 36.4 1.5E+02 0.0032 27.5 7.4 51 87-157 86-138 (299)
90 cd06597 GH31_transferase_CtsY 35.4 81 0.0018 30.0 5.6 22 83-104 83-104 (340)
91 cd06592 GH31_glucosidase_KIAA1 35.3 70 0.0015 29.8 5.1 23 83-105 68-90 (303)
92 cd06598 GH31_transferase_CtsZ 35.2 1.2E+02 0.0027 28.3 6.7 23 83-105 68-90 (317)
93 PF00150 Cellulase: Cellulase 34.7 2.9E+02 0.0063 24.3 8.9 24 84-107 61-84 (281)
94 cd02911 arch_FMN Archeal FMN-b 34.6 1.3E+02 0.0029 26.9 6.6 51 85-157 59-109 (233)
95 PF14488 DUF4434: Domain of un 34.2 2.9E+02 0.0063 23.4 12.6 113 49-172 31-152 (166)
96 PRK10933 trehalose-6-phosphate 33.4 85 0.0018 32.0 5.6 60 45-105 40-101 (551)
97 COG3882 FkbH Predicted enzyme 33.2 77 0.0017 32.0 5.0 46 139-187 236-281 (574)
98 cd04738 DHOD_2_like Dihydrooro 33.0 1.7E+02 0.0038 27.5 7.4 74 84-172 114-196 (327)
99 cd06599 GH31_glycosidase_Aec37 32.9 1.2E+02 0.0026 28.4 6.2 23 83-105 71-93 (317)
100 PRK07565 dihydroorotate dehydr 32.1 2.2E+02 0.0048 26.8 7.9 52 84-156 86-138 (334)
101 cd06589 GH31 The enzymes of gl 31.6 98 0.0021 28.1 5.3 55 83-157 64-118 (265)
102 PRK09441 cytoplasmic alpha-amy 31.4 50 0.0011 32.9 3.5 27 79-105 75-101 (479)
103 cd06523 GH25_PlyB-like PlyB is 31.2 2.3E+02 0.0051 23.9 7.3 69 85-170 39-112 (177)
104 TIGR00737 nifR3_yhdG putative 29.8 64 0.0014 30.2 3.8 42 95-157 59-100 (319)
105 PRK03620 5-dehydro-4-deoxygluc 29.8 4.6E+02 0.0099 24.3 10.2 111 84-214 27-142 (303)
106 TIGR00742 yjbN tRNA dihydrouri 29.3 90 0.0019 29.5 4.7 41 96-157 52-92 (318)
107 PRK14511 maltooligosyl trehalo 29.0 1.3E+02 0.0027 32.7 6.1 61 45-105 27-89 (879)
108 PRK15108 biotin synthase; Prov 28.1 3.1E+02 0.0067 26.1 8.2 35 141-175 142-184 (345)
109 cd00408 DHDPS-like Dihydrodipi 28.0 4.5E+02 0.0098 23.7 10.5 112 84-214 17-133 (281)
110 cd00951 KDGDH 5-dehydro-4-deox 28.0 4.8E+02 0.01 24.0 11.0 45 84-129 20-64 (289)
111 PLN02495 oxidoreductase, actin 27.3 3.8E+02 0.0083 26.1 8.7 54 84-157 97-152 (385)
112 PRK05286 dihydroorotate dehydr 27.2 3.6E+02 0.0077 25.6 8.4 109 84-208 124-245 (344)
113 TIGR02313 HpaI-NOT-DapA 2,4-di 27.0 5E+02 0.011 23.9 10.1 112 84-214 20-137 (294)
114 PRK10785 maltodextrin glucosid 26.8 63 0.0014 33.3 3.4 28 78-105 219-246 (598)
115 cd06522 GH25_AtlA-like AtlA is 26.7 3E+02 0.0065 23.6 7.2 17 85-101 42-58 (192)
116 cd00950 DHDPS Dihydrodipicolin 26.6 4.9E+02 0.011 23.6 10.0 111 84-214 20-136 (284)
117 PTZ00301 uridine kinase; Provi 26.5 1.6E+02 0.0034 26.0 5.5 23 151-173 59-81 (210)
118 TIGR00674 dapA dihydrodipicoli 26.2 5E+02 0.011 23.6 10.3 112 84-214 18-134 (285)
119 COG0036 Rpe Pentose-5-phosphat 26.0 3.7E+02 0.008 24.2 7.7 63 142-213 81-143 (220)
120 PRK13523 NADPH dehydrogenase N 26.0 1.9E+02 0.0041 27.5 6.3 22 84-105 80-101 (337)
121 TIGR02456 treS_nterm trehalose 25.6 1.4E+02 0.0031 30.2 5.7 58 46-104 36-95 (539)
122 COG1891 Uncharacterized protei 24.2 4.9E+02 0.011 22.8 8.2 63 145-213 20-92 (235)
123 COG0279 GmhA Phosphoheptose is 24.2 4.7E+02 0.01 22.6 9.6 84 88-187 31-121 (176)
124 PF00485 PRK: Phosphoribulokin 24.2 1.6E+02 0.0035 25.1 5.1 23 151-173 59-81 (194)
125 PRK02227 hypothetical protein; 24.1 5.5E+02 0.012 23.4 10.6 121 144-281 19-150 (238)
126 cd04741 DHOD_1A_like Dihydroor 23.8 4.7E+02 0.01 24.2 8.4 80 84-185 73-167 (294)
127 TIGR02401 trehalose_TreY malto 23.5 1.4E+02 0.0031 32.0 5.4 61 45-105 23-85 (825)
128 cd06417 GH25_LysA-like LysA is 23.5 4E+02 0.0086 22.8 7.4 17 85-101 36-52 (195)
129 PF00834 Ribul_P_3_epim: Ribul 23.4 1.9E+02 0.0042 25.3 5.4 63 141-212 76-138 (201)
130 cd06602 GH31_MGAM_SI_GAA This 23.3 1.1E+02 0.0024 29.0 4.2 68 104-186 10-90 (339)
131 cd02067 B12-binding B12 bindin 22.7 1.1E+02 0.0023 23.8 3.4 63 27-109 27-90 (119)
132 TIGR02370 pyl_corrinoid methyl 22.3 1E+02 0.0022 26.9 3.4 25 84-108 149-175 (197)
133 KOG1686 Mitochondrial/chloropl 22.2 36 0.00078 28.4 0.5 39 253-291 4-42 (151)
134 cd00952 CHBPH_aldolase Trans-o 21.9 6.5E+02 0.014 23.4 10.3 113 84-214 28-145 (309)
135 cd06604 GH31_glucosidase_II_Ma 21.5 3.2E+02 0.007 25.7 7.0 64 83-157 62-161 (339)
136 PRK08318 dihydropyrimidine deh 21.3 4.4E+02 0.0096 25.6 8.1 69 97-185 98-178 (420)
137 cd06601 GH31_lyase_GLase GLase 21.2 2.6E+02 0.0057 26.5 6.2 62 84-156 63-134 (332)
138 PLN00196 alpha-amylase; Provis 21.2 89 0.0019 30.9 3.1 25 81-105 88-112 (428)
139 PF14587 Glyco_hydr_30_2: O-Gl 21.1 1.9E+02 0.0041 28.2 5.3 75 88-173 107-214 (384)
140 cd02070 corrinoid_protein_B12- 20.7 1.1E+02 0.0024 26.6 3.3 26 84-109 147-174 (201)
141 PLN02229 alpha-galactosidase 20.5 4.7E+02 0.01 26.0 7.9 77 86-184 129-216 (427)
142 PLN02361 alpha-amylase 20.3 1.1E+02 0.0024 30.0 3.5 58 47-105 38-96 (401)
143 cd02071 MM_CoA_mut_B12_BD meth 20.2 1E+02 0.0022 24.4 2.8 59 31-108 30-89 (122)
No 1
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=100.00 E-value=4.3e-67 Score=482.62 Aligned_cols=271 Identities=56% Similarity=1.015 Sum_probs=241.0
Q ss_pred CcEEEEeCCCCCCccccccccCCCccEEEEceeeecCCCCcceeecCCCCCCCCC-ChhhHHHHHHHHhhCCceEEEEEc
Q 043511 28 GGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAG-GCRVVSDAIKSCQSRGIKVMLSLG 106 (300)
Q Consensus 28 ~~vv~Ywg~~~~~~~l~~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Ik~~q~~g~KVLlSiG 106 (300)
.+|++||||+.++++|+++|+++.||+|++||+..+++++.|.++|++||.+... .|+++.++||.||++|+|||||||
T Consensus 1 ~~v~vyWGq~~~~~~L~~~C~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLSIG 80 (280)
T cd02877 1 GNIAVYWGQNSDEGSLREYCDTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLSIG 80 (280)
T ss_pred CCeEEECCCCCCCCCHHHHhCCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEEEcc
Confidence 4799999999999999999999999999999999998877899999999966433 699999999999999999999999
Q ss_pred CCCCCcCccChhhHHHHHHHHHHhhcCCCC--CcccccccccceeeeeccCCCcccHHHHHHHHHHhhcC--CCceEEEe
Q 043511 107 GGVGSYSLASVADAKNVADYLWNNFLGGTS--SSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSR--GKKVYLTA 182 (300)
Q Consensus 107 G~~g~~~~~s~~~~~~fa~~l~~~f~~g~s--~~r~~~~~~~DGiDiD~E~p~~~~~~~l~~~Lr~~~~~--g~~~llTa 182 (300)
||++++.++++++|++||++||++|+++.+ ..||+++++|||||||||+|...+|..|+++||++++. +++|+||+
T Consensus 81 G~~~~~~~~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~~~~~~l~~~LR~~~~~~~~~~~~LTa 160 (280)
T cd02877 81 GAGGSYSLSSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSPENYDALAKRLRSLFASDPSKKYYLTA 160 (280)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCccCHHHHHHHHHHHhhcccCCceEEEe
Confidence 999888899999999999999999987654 57999999999999999999988999999999998753 47899999
Q ss_pred CCCCCCCcchhhhhhhcCCCceEEeeecCCCCCCCCCCChhhHHHHHHHHHccCCC---CeEEEeeecCCCCCCCCCcCh
Q 043511 183 APQCPFPDRFLGAALNTGLFDYVWVQFYNNPPCQYSSGNTQNLISSFNRWASSLRN---GKLFLGLPAAPAAAGSGYIPP 259 (300)
Q Consensus 183 Ap~~~~~d~~~~~~l~~~~~D~invq~Yd~~~~~~~~~~~~~~~~~~~~w~~g~p~---~KlvlG~p~~~~~a~~Gyv~~ 259 (300)
||+|++|+.++..++....||||||||||++.|.+..+........|+.|.+.+|. +||+||+|++|+++++|||+|
T Consensus 161 APq~~~~d~~~~~~i~~~~~D~i~vqfYn~~~c~~~~~~~~~~~~~~~~w~~~~~~~~~~kv~lGlpas~~aa~~Gyv~p 240 (280)
T cd02877 161 APQCPYPDASLGDAIATGLFDFIFVQFYNNPCCSYASGNASGFNFNWDTWTSWAKATSNAKVFLGLPASPEAAGSGYVDP 240 (280)
T ss_pred ccccCCcchhHHHHHccCccCEEEEEEecCccccccccccchhhhHHHHHHHhcccCCCceEEEecccCCCCCCCCccCH
Confidence 99999999877777766799999999999999976533333344567888776666 899999999999889999999
Q ss_pred HHHHHHHhHhhhcCCCCceEEEeeccccCC-CCchhhhhc
Q 043511 260 NVLTSQVLPQIKTSPKYGGVMLWSKFFDDQ-NGYSSSIRA 298 (300)
Q Consensus 260 ~~l~~~~~~~~~~~~~~gGvm~W~~~~d~~-~~~~~~ik~ 298 (300)
++|...+.+..+++|+|||||+||+++|.. ++|++.||+
T Consensus 241 ~~l~~~v~~~~~~~~~fGGvM~Wd~~~~~~~~~y~~~i~~ 280 (280)
T cd02877 241 SELASLVLPVKQKSPNFGGVMLWDASQDKQGTGYSSKIKD 280 (280)
T ss_pred HHHHHHHHHHhhcCCCCcEEEEEhHhhccCCCCHHHHhcC
Confidence 999987766666778999999999999998 799999985
No 2
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.5e-64 Score=465.74 Aligned_cols=277 Identities=43% Similarity=0.746 Sum_probs=255.7
Q ss_pred HHhhccCCCcEEEEeCCC--CCCccccccccCCCccEEEEceeeecCCCCcceeecCCCCCCCCC----ChhhHHHHHHH
Q 043511 20 LIKASQGAGGIAIYWGQN--GNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAG----GCRVVSDAIKS 93 (300)
Q Consensus 20 ~~~~~~~~~~vv~Ywg~~--~~~~~l~~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Ik~ 93 (300)
.....+ ..+|++||||+ +++++|..+|.++.|+.|+++|+..|+++++|++||+++|.+... .|.++.++|+.
T Consensus 20 k~~~~~-~t~IA~YWGQN~aG~q~~Ls~yC~~~~yd~~~lsFL~~F~~~~Tp~LNfAn~Csd~~~~~l~~CTqi~~di~~ 98 (568)
T KOG4701|consen 20 KLNLTN-QTAIAGYWGQNLAGDQKRLSSYCQNTTYDAIILSFLIDFNVDGTPVLNFANLCSDSDTFSLKKCTQIETDIQV 98 (568)
T ss_pred cccccc-ccceEEEeccccccchhhhhhhhccCccceeeeehhhhcCCCCCceeehhcccCccccccccccchhhhHHHH
Confidence 335556 78999999999 678999999999999999999999999999999999999977643 49999999999
Q ss_pred HhhCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCcccHHHHHHHHHHhhc
Q 043511 94 CQSRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSS 173 (300)
Q Consensus 94 ~q~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~~~~~~l~~~Lr~~~~ 173 (300)
||.+|+|||||+||..|+|.+.++++++.||+.+||.|++|.+..|||++..+||||||+|...++.|..|.+.||+++.
T Consensus 99 CQS~GiKVlLSLGG~~GnYs~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~g~~~~ysaLA~~L~~~Fa 178 (568)
T KOG4701|consen 99 CQSNGIKVLLSLGGYNGNYSLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIEKGTNTAYSALAKRLLEIFA 178 (568)
T ss_pred HHhcCeEEEEeccCcccceeeccchhHHHHHHHHHHHhcCCccccCcccchhccceeeeeecCCcchHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C-CCceEEEeCCCCCCCcchhhhhhhcCCCceEEeeecCCCCCCCCCCChhhHHHHHHHHHccCCCCe---EEEeeecCC
Q 043511 174 R-GKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNNPPCQYSSGNTQNLISSFNRWASSLRNGK---LFLGLPAAP 249 (300)
Q Consensus 174 ~-g~~~llTaAp~~~~~d~~~~~~l~~~~~D~invq~Yd~~~~~~~~~~~~~~~~~~~~w~~g~p~~K---lvlG~p~~~ 249 (300)
. +|+|+|++|||||+||+.++.+|..+.|||++||||||+.|++..++..+..++|.+|...+.++| ++||+|..+
T Consensus 179 ~~~r~yYLsaAPQCP~PD~~~G~aL~~~~fDf~~IQFYNN~~CS~SsG~~Q~~fDsW~~ya~~~a~nKn~~lFLGLPg~~ 258 (568)
T KOG4701|consen 179 SDPRRYYLSAAPQCPVPDHTLGKALSENSFDFLSIQFYNNSTCSGSSGSRQSTFDAWVEYAEDSAYNKNTSLFLGLPGHQ 258 (568)
T ss_pred cCCceEEeccCCCCCCCchhhhhhhhccccceEEEEeecCCCcccccCcccccHHHHHHHHhhhcccccceEEeeccCCc
Confidence 4 789999999999999999999998899999999999999999987776777889999987665555 999999999
Q ss_pred CCCCCCCcChHHHHHHHhHhhhcCCCCceEEEeec---cccCCCC-chhhhh
Q 043511 250 AAAGSGYIPPNVLTSQVLPQIKTSPKYGGVMLWSK---FFDDQNG-YSSSIR 297 (300)
Q Consensus 250 ~~a~~Gyv~~~~l~~~~~~~~~~~~~~gGvm~W~~---~~d~~~~-~~~~ik 297 (300)
.+||+||++|..|.+.+++.+++...|||||+|+. +++..|| |...|-
T Consensus 259 ~AAGSGYIsp~~Lt~~~l~~~a~S~~fGGv~LWd~s~aF~~~~NG~~~~~IL 310 (568)
T KOG4701|consen 259 NAAGSGYISPKNLTRDLLNYKANSTLFGGVTLWDTSLAFMSYDNGSFVEAIL 310 (568)
T ss_pred ccccCCccCchHHHHHHHHhhhhccccccEEEeechhhhhhcccCchHHHHH
Confidence 99999999999999999999999999999999997 8888898 766653
No 3
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=100.00 E-value=6.4e-49 Score=368.09 Aligned_cols=256 Identities=27% Similarity=0.440 Sum_probs=188.1
Q ss_pred CcEEEEeCCCCCCc-cc--cccccCCCccEEEEceeeecCCCCcc-eeecCCCCCCCCCChhhHHHHHHHHhhCCceEEE
Q 043511 28 GGIAIYWGQNGNEG-TL--TSTCATGKYAYVNIAFLNKFGNGQTP-EINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVML 103 (300)
Q Consensus 28 ~~vv~Ywg~~~~~~-~l--~~~~~~~~~thii~aF~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVLl 103 (300)
++|+|||+.|.... .. +...+++.||||+|||+.+++++... .+++... +....+..+.++|+.||++|+||||
T Consensus 1 k~~vgY~~~w~~~~~~~~~~~~~~~~~yt~i~~AF~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~q~~G~KVll 78 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGRQDLDDVPSKYNVINVAFAEPTSDGGGEVTFNNGSS--PGGYSPAEFKADIKALQAKGKKVLI 78 (312)
T ss_pred CeEEEecCcccCCCCCCCCCcccCCCCCCEEEEcceeecCCCceeEeecccCC--cccCChHHHHHHHHHHHHCCCEEEE
Confidence 47899999996421 11 22234789999999999987654321 2222221 2223467889999999999999999
Q ss_pred EEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCcc-----cHHHHHHHHHHhhc-CCCc
Q 043511 104 SLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTL-----HWDDLARFLSAYSS-RGKK 177 (300)
Q Consensus 104 SiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~~-----~~~~l~~~Lr~~~~-~g~~ 177 (300)
|||||.++..+.+++.|++|++++++ ++++|+|||||||||+|... +..+|+++||++++ .+++
T Consensus 79 SiGG~~~~~~~~~~~~~~~fa~sl~~----------~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~~ 148 (312)
T cd02871 79 SIGGANGHVDLNHTAQEDNFVDSIVA----------IIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYGPN 148 (312)
T ss_pred EEeCCCCccccCCHHHHHHHHHHHHH----------HHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 99999987777888999999999985 68999999999999998642 44555665555543 2568
Q ss_pred eEEEeCCCCCCCcc----------hh---hhhhhcCCCceEEeeecCCCCC---C---CCCCChhhHHH----HHHHHH-
Q 043511 178 VYLTAAPQCPFPDR----------FL---GAALNTGLFDYVWVQFYNNPPC---Q---YSSGNTQNLIS----SFNRWA- 233 (300)
Q Consensus 178 ~llTaAp~~~~~d~----------~~---~~~l~~~~~D~invq~Yd~~~~---~---~~~~~~~~~~~----~~~~w~- 233 (300)
|+||+||+|++++. .+ ...+ ..+||||||||||+++| . +..+. ..+.. .|..|.
T Consensus 149 ~~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~D~invqfYn~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 226 (312)
T cd02871 149 FILTMAPETPYVQGGYAAYGGIWGAYLPLIDNL-RDDLTWLNVQYYNSGGMGGCDGQSYSQGT-ADFLVALADMLLTGFP 226 (312)
T ss_pred eEEEECCCcccccCcccccccCCcchhHHHHHh-hhheeEEEEeeccCCCcccccccCCccch-hHHHHHHHHHHHcCCC
Confidence 99999999998763 11 1233 36999999999999854 2 11111 22222 333332
Q ss_pred -------ccCCCCeEEEeeecCCCCCCCCCcChHHHHHHHhHhhhc------------CCCCceEEEeeccccCCCC--c
Q 043511 234 -------SSLRNGKLFLGLPAAPAAAGSGYIPPNVLTSQVLPQIKT------------SPKYGGVMLWSKFFDDQNG--Y 292 (300)
Q Consensus 234 -------~g~p~~KlvlG~p~~~~~a~~Gyv~~~~l~~~~~~~~~~------------~~~~gGvm~W~~~~d~~~~--~ 292 (300)
.++|++||+||+|++++++++|||+|++|...+ ..+++ +|+|||||+|+++||+.++ |
T Consensus 227 ~~~~~~~~~~p~~Kv~iG~pa~~~aa~~gyv~~~~l~~~i-~~l~~~~~~~~~~~~~~y~~~gGvm~W~~~~d~~~~~~f 305 (312)
T cd02871 227 IAGNDRFPPLPADKVVIGLPASPSAAGGGYVSPSEVIKAL-DCLMKGTNCGSYYPAGGYPSLRGLMTWSINWDATNNYEF 305 (312)
T ss_pred ccCCcccccCChhhEEEeccCCCCccCCCccCHHHHHHHH-HHHhcCCCCCcccCCCCCCCcceEEEEEecccCcCCccc
Confidence 238999999999999988889999999998655 55554 3899999999999999998 4
Q ss_pred hhhhhc
Q 043511 293 SSSIRA 298 (300)
Q Consensus 293 ~~~ik~ 298 (300)
++.+++
T Consensus 306 ~~~~~~ 311 (312)
T cd02871 306 SKNYGA 311 (312)
T ss_pred chhccC
Confidence 777764
No 4
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=100.00 E-value=1.8e-47 Score=348.81 Aligned_cols=234 Identities=25% Similarity=0.335 Sum_probs=178.0
Q ss_pred cEEEEeCCCCC--Cc---ccc-ccccCCCccEEEEceeeecCCCCcceeecCCCCCCCCCChhhHHHHHHHHhhCCceEE
Q 043511 29 GIAIYWGQNGN--EG---TLT-STCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVM 102 (300)
Q Consensus 29 ~vv~Ywg~~~~--~~---~l~-~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVL 102 (300)
++||||++|.. .. .++ ...+..+||||+|||+.+..+| .+.+.++. +..+.+..+.++|+.||++|+|||
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G---~l~~~d~~-~~~~~~~~~~~~i~~~~~~g~KVl 76 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDG---NIHLNDHP-PDHPRFTTLWTELAILQSSGVKVM 76 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCC---eEEECCCC-CCcchhhHHHHHHHHHHhCCCEEE
Confidence 68999999942 21 132 3456789999999999987665 35555542 333345678899999999999999
Q ss_pred EEEcCCC-CCcCc--cChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc-ccHHHHHHHHHHhhcCCCce
Q 043511 103 LSLGGGV-GSYSL--ASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST-LHWDDLARFLSAYSSRGKKV 178 (300)
Q Consensus 103 lSiGG~~-g~~~~--~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~-~~~~~l~~~Lr~~~~~g~~~ 178 (300)
||||||+ ++++. .+++.|++|++++.+ ++++|+|||||||||+|.. .++..|+++||+.+ ++++
T Consensus 77 lSiGG~~~~~fs~~a~~~~~r~~f~~s~~~----------~~~~~~~DGiDiDwE~p~~~~~~~~ll~~Lr~~~--~~~~ 144 (256)
T cd06546 77 GMLGGAAPGSFSRLDDDDEDFERYYGQLRD----------MIRRRGLDGLDLDVEEPMSLDGIIRLIDRLRSDF--GPDF 144 (256)
T ss_pred EEECCCCCCCcccccCCHHHHHHHHHHHHH----------HHHHhCCCceEEeeecCCCHhHHHHHHHHHHHHh--CCCc
Confidence 9999996 44543 456789999998864 6899999999999999964 68889999998876 4679
Q ss_pred EEEeCCCCCCCcc---h-----hhhhh--hcCCCceEEeeecCCCCCCCCCCChhhHHHHHHHHHc-cCCCCeEEEeeec
Q 043511 179 YLTAAPQCPFPDR---F-----LGAAL--NTGLFDYVWVQFYNNPPCQYSSGNTQNLISSFNRWAS-SLRNGKLFLGLPA 247 (300)
Q Consensus 179 llTaAp~~~~~d~---~-----~~~~l--~~~~~D~invq~Yd~~~~~~~~~~~~~~~~~~~~w~~-g~p~~KlvlG~p~ 247 (300)
+||+||+|+.... . +.+.. ....+||+|+||||+++|..+ ...|..|.+ ++|++||++|+|+
T Consensus 145 ~lT~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~~~-------~~~~~~~~~~~~~~~Kv~iGlpa 217 (256)
T cd06546 145 IITLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSMSS-------PSDYDAIVAQGWDPERIVIGLLT 217 (256)
T ss_pred EEEECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCccC-------HHHHHHHHHcCCCcccEEEEEec
Confidence 9999999864211 1 11111 147999999999998743211 134556665 8999999999999
Q ss_pred CCCCCCCCCcChHHHHHHHhHhhhcCCCCceEEEeeccc
Q 043511 248 APAAAGSGYIPPNVLTSQVLPQIKTSPKYGGVMLWSKFF 286 (300)
Q Consensus 248 ~~~~a~~Gyv~~~~l~~~~~~~~~~~~~~gGvm~W~~~~ 286 (300)
+|. +++|||+|++|.+.+.+..+++++|||||+||+..
T Consensus 218 ~~~-a~~Gyv~~~~l~~~v~~l~~~~~~~gGvm~W~~~~ 255 (256)
T cd06546 218 NPD-NGQGFVPFDTLSSTLSTLRQRYPNFGGVMGWEYFN 255 (256)
T ss_pred cCC-cCCCccCHHHHHHHHHHHHHhCCCCceEEEecccC
Confidence 986 56799999999877655556789999999999764
No 5
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=100.00 E-value=2.3e-38 Score=288.07 Aligned_cols=237 Identities=18% Similarity=0.189 Sum_probs=163.0
Q ss_pred EEEEeCCCCCCccccccccCC-CccEEEEceeeec-CCCCcceeecCCCCCCCCCChhhHHHHHHHHhhCCceEEEEEcC
Q 043511 30 IAIYWGQNGNEGTLTSTCATG-KYAYVNIAFLNKF-GNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMLSLGG 107 (300)
Q Consensus 30 vv~Ywg~~~~~~~l~~~~~~~-~~thii~aF~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVLlSiGG 107 (300)
+..|.|......++++++... .||||||||+... .........+....+.......+ ...+|+ +++++||||||||
T Consensus 2 ~~~y~~~~~~~~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lK~-~~p~lKvllSiGG 79 (253)
T cd06544 2 FREYIGADFNGVTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPYWDTENLTPEA-VKSIKA-QHPNVKVVISIGG 79 (253)
T ss_pred chhhhccCCCCccccccCCCCCeeEEEEEEeeeecccccCCCCCccccccCccccCHHH-HHHHHH-hCCCcEEEEEeCC
Confidence 346777766555677776332 5999999999532 21000001111110011111222 356666 6789999999999
Q ss_pred CCCC--cCccChhhHHHH----HHHHHHhhcCCCCCcccccccccceeeeeccCCCc--ccHHHHHHHHHHhhcCCCceE
Q 043511 108 GVGS--YSLASVADAKNV----ADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST--LHWDDLARFLSAYSSRGKKVY 179 (300)
Q Consensus 108 ~~g~--~~~~s~~~~~~f----a~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~--~~~~~l~~~Lr~~~~~g~~~l 179 (300)
|+.+ ....++..|++| ++++. +++++|+|||||||||||.. +++..|+++||+.++. ++ +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~fv~S~~----------~~l~~~~fDGiDiDwE~~~~d~~~f~~ll~~l~~~l~~-~~-~ 147 (253)
T cd06544 80 RGVQNNPTPFDPSNVDSWVSNAVSSLT----------SIIQTYNLDGIDIDYEHFPADPDTFVECIGQLITELKN-NG-V 147 (253)
T ss_pred CCCCCCccccCchhhhhHHHHHHHHHH----------HHHHHhCCCceeeecccCCcCHHHHHHHHHHHHHHhhh-cC-C
Confidence 9842 233344445455 56554 57999999999999999863 6788999989887643 23 6
Q ss_pred EEeCCCCCCCcc---hhhhhhh--cCCCceEEeeecCCCCCCCCCCChhhHHHHHHHHHccCCCCeEEEeeecCCCCCCC
Q 043511 180 LTAAPQCPFPDR---FLGAALN--TGLFDYVWVQFYNNPPCQYSSGNTQNLISSFNRWASSLRNGKLFLGLPAAPAAAGS 254 (300)
Q Consensus 180 lTaAp~~~~~d~---~~~~~l~--~~~~D~invq~Yd~~~~~~~~~~~~~~~~~~~~w~~g~p~~KlvlG~p~~~~~a~~ 254 (300)
||+|+.+|..+. ++...+. .+.+|++++|||+.++|. +.+.+.+.|++|++++|++||++|+|+++.++
T Consensus 148 lt~a~vap~~~~~~~~y~~~~~~~~d~id~~~~qfy~~~~~~----~~~~~~~~~~~~~~~~p~~Kv~lGl~a~~~~~-- 221 (253)
T cd06544 148 IKVASIAPSEDAEQSHYLALYNAYGDYIDYVNYQFYNYGVPT----TVAKYVEFYDEVANNYPGKKVLASFSTDGEDG-- 221 (253)
T ss_pred eEEEEecCCccccccccHHHHHHhhCceeEEEhhhhCCCCCC----CHHHHHHHHHHHHhCCCcccEEEEEecCCCcc--
Confidence 777777664332 2222211 478999999999988764 34556688999999999999999999998653
Q ss_pred CCcChHHHHHHHhHhhhcCCCCceEEEeecccc
Q 043511 255 GYIPPNVLTSQVLPQIKTSPKYGGVMLWSKFFD 287 (300)
Q Consensus 255 Gyv~~~~l~~~~~~~~~~~~~~gGvm~W~~~~d 287 (300)
++++|+.+.. +++.+++.+++||||+|+++++
T Consensus 222 ~~v~~~~~~~-~lp~l~~~~~~gGvm~W~~~~~ 253 (253)
T cd06544 222 ANIPGEIFIG-GCKRLKKNGSLPGVFIWNADDS 253 (253)
T ss_pred CcCChHHhhh-hchHhhhCCCCCeEEEEecCCC
Confidence 4699999874 6699998889999999999874
No 6
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=2e-37 Score=282.21 Aligned_cols=235 Identities=24% Similarity=0.319 Sum_probs=174.5
Q ss_pred EEEEeCCCCCCccccccccCCCccEEEEceeeecCCCCcceeecCCCCCCCCCChhhHHHHHHHHhhCCceEEEEEcCCC
Q 043511 30 IAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMLSLGGGV 109 (300)
Q Consensus 30 vv~Ywg~~~~~~~l~~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVLlSiGG~~ 109 (300)
|+|||+.|.....+++.|+..+||||+++|+.+..+|. +.+.. ....+...++.||++|+|||+|||||.
T Consensus 1 vigyy~~w~~~~~~~~~~~~~~lThv~~~f~~i~~~G~---l~~~~-------~~~~~~~~~~~~~~~~~kvl~sigg~~ 70 (253)
T cd06545 1 VVGYLPNYDDLNALSPTIDFSKLTHINLAFANPDANGT---LNANP-------VRSELNSVVNAAHAHNVKILISLAGGS 70 (253)
T ss_pred CEEEeCCcccccCCcccCChhhCCeEEEEEEEECCCCe---EEecC-------cHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 58999999765557888999999999999998876653 33322 134566778898999999999999997
Q ss_pred CCc---CccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc--ccHHHHHHHHHHhhcCCCceEEEeCC
Q 043511 110 GSY---SLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST--LHWDDLARFLSAYSSRGKKVYLTAAP 184 (300)
Q Consensus 110 g~~---~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~--~~~~~l~~~Lr~~~~~g~~~llTaAp 184 (300)
.+. .+.+++.|++|++++++ ++++|+|||||||||+|.. ++|..|+++||+.++. .+++||+|+
T Consensus 71 ~~~~~~~~~~~~~r~~fi~~lv~----------~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~Lr~~l~~-~~~~lt~av 139 (253)
T cd06545 71 PPEFTAALNDPAKRKALVDKIIN----------YVVSYNLDGIDVDLEGPDVTFGDYLVFIRALYAALKK-EGKLLTAAV 139 (253)
T ss_pred CCcchhhhcCHHHHHHHHHHHHH----------HHHHhCCCceeEEeeccCccHhHHHHHHHHHHHHHhh-cCcEEEEEc
Confidence 432 24578889999999985 6799999999999999975 5899999999997743 357899998
Q ss_pred CCCCCcchhhhhhhcCCCceEEeeecCCCCCC----CCC-CChhhHHHHHHHHHc-cC-CCCeEEEeeecCCCCCCCCCc
Q 043511 185 QCPFPDRFLGAALNTGLFDYVWVQFYNNPPCQ----YSS-GNTQNLISSFNRWAS-SL-RNGKLFLGLPAAPAAAGSGYI 257 (300)
Q Consensus 185 ~~~~~d~~~~~~l~~~~~D~invq~Yd~~~~~----~~~-~~~~~~~~~~~~w~~-g~-p~~KlvlG~p~~~~~a~~Gyv 257 (300)
.+... ..+...+ .+++||||||+||.++.. ..+ .....+...+++|.. |+ |++||+||+|++... -.|-
T Consensus 140 ~~~~~-~~~~~~~-~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~~~~~~v~~~~~~g~ip~~KlvlGlp~YG~~--w~~~ 215 (253)
T cd06545 140 SSWNG-GAVSDST-LAYFDFINIMSYDATGPWWGDNPGQHSSYDDAVNDLNYWNERGLASKDKLVLGLPFYGYG--FYYN 215 (253)
T ss_pred cCccc-ccccHHH-HhhCCEEEEEcCcCCCCCCCCCCCCCCchHhHHHHHHHHHHcCCCCHHHEEEEeCCcccc--ccCC
Confidence 86422 2222233 378999999999975311 011 122345678889975 76 999999999998432 1345
Q ss_pred ChHHHHHHHhHhhhcCCCCceEEEeeccccCCCCc
Q 043511 258 PPNVLTSQVLPQIKTSPKYGGVMLWSKFFDDQNGY 292 (300)
Q Consensus 258 ~~~~l~~~~~~~~~~~~~~gGvm~W~~~~d~~~~~ 292 (300)
++..+... +++.+.. |||||+||+..|..+..
T Consensus 216 ~~~~~~~~-~~~~~~~--~gG~~~w~~~~d~~~~~ 247 (253)
T cd06545 216 GIPTIRNK-VAFAKQN--YGGVMIWELSQDASGEN 247 (253)
T ss_pred CHHHHHHH-HHHHHHh--cCeEEEEeccCCCCCCc
Confidence 55566543 3566654 99999999999986544
No 7
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=8.1e-36 Score=277.98 Aligned_cols=244 Identities=21% Similarity=0.248 Sum_probs=168.5
Q ss_pred CcEEEEeCCCCCCccccccccCCCccEEEEceeeecCCCCcceeecCCCCCCCCCChhhHHHHHHHHhhCCceEEEEEcC
Q 043511 28 GGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMLSLGG 107 (300)
Q Consensus 28 ~~vv~Ywg~~~~~~~l~~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVLlSiGG 107 (300)
-.++|||.+|+ ..-.++.++.++||||+|||+.+.+++. .+.+.+. .......+.+.+|+ +++++||||||||
T Consensus 3 ~~~~~Y~~~w~-~~~~~~~i~~~~~THi~yaf~~~~~~~~--~~~~~~~---~~~~~~~~~~~~k~-~~~~lkvlisiGG 75 (299)
T cd02879 3 IVKGGYWPAWS-EEFPPSNIDSSLFTHLFYAFADLDPSTY--EVVISPS---DESEFSTFTETVKR-KNPSVKTLLSIGG 75 (299)
T ss_pred eEEEEEECCCC-CCCChhHCCcccCCEEEEEEEEecCCCC--EEeeccc---cHHHHHHHHHHHHH-hCCCCeEEEEEeC
Confidence 35789999997 2223466678999999999999876542 2222221 01113344455665 6889999999999
Q ss_pred CCC-CcCc----cChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc----ccHHHHHHHHHHhhc-----
Q 043511 108 GVG-SYSL----ASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST----LHWDDLARFLSAYSS----- 173 (300)
Q Consensus 108 ~~g-~~~~----~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~----~~~~~l~~~Lr~~~~----- 173 (300)
|+. +..| .+++.|++|++++++ ++++|+|||||||||+|.. ++|..|+++||+.++
T Consensus 76 ~~~~s~~fs~~~~~~~~R~~fi~siv~----------~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~~ 145 (299)
T cd02879 76 GGSDSSAFAAMASDPTARKAFINSSIK----------VARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEARS 145 (299)
T ss_pred CCCCCchhhHHhCCHHHHHHHHHHHHH----------HHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhhc
Confidence 984 3333 467889999999975 6899999999999999963 578888999988764
Q ss_pred CC-CceEEEeCCCCC-CC-----cchhh-hhhhcCCCceEEeeecCCCCCCC----CC-------CChhhHHHHHHHHHc
Q 043511 174 RG-KKVYLTAAPQCP-FP-----DRFLG-AALNTGLFDYVWVQFYNNPPCQY----SS-------GNTQNLISSFNRWAS 234 (300)
Q Consensus 174 ~g-~~~llTaAp~~~-~~-----d~~~~-~~l~~~~~D~invq~Yd~~~~~~----~~-------~~~~~~~~~~~~w~~ 234 (300)
.+ ++++||+|+... .. ...++ ..+ .+++||||||.||.++... .+ ...-+...+++.|++
T Consensus 146 ~~~~~~~ls~av~~~~~~~~~~~~~~yd~~~l-~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~~~~~~~~v~~~~~ 224 (299)
T cd02879 146 SGRPPLLLTAAVYFSPILFLSDDSVSYPIEAI-NKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSNVSTDYGIKSWIK 224 (299)
T ss_pred cCCCcEEEEeecccchhhccccccccCCHHHH-HhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCCCCCHHHHHHHHHH
Confidence 12 579999997642 10 11122 334 4899999999999653110 00 011134567788874
Q ss_pred -cCCCCeEEEeeecCCCC-------C-------CC---CCcChHHHHHHHhHhhhcCCCCceEEEeeccccCCCC
Q 043511 235 -SLRNGKLFLGLPAAPAA-------A-------GS---GYIPPNVLTSQVLPQIKTSPKYGGVMLWSKFFDDQNG 291 (300)
Q Consensus 235 -g~p~~KlvlG~p~~~~~-------a-------~~---Gyv~~~~l~~~~~~~~~~~~~~gGvm~W~~~~d~~~~ 291 (300)
|+|++||+||+|++... + +. +|=+++.+...+ +.+++ .++||||+|++..|..++
T Consensus 225 ~g~p~~KlvlGvp~YGr~~~~~D~~~~~~y~~~~~~wi~ydd~~Si~~K~-~~a~~-~~lgGv~~W~l~~Dd~~~ 297 (299)
T cd02879 225 AGVPAKKLVLGLPLYGRAWTLYDTTTVSSYVYAGTTWIGYDDVQSIAVKV-KYAKQ-KGLLGYFAWAVGYDDNNW 297 (299)
T ss_pred cCCCHHHEEEEeccccccccccCCCcceEEEEECCEEEEeCCHHHHHHHH-HHHHh-CCCCeEEEEEeecCCccc
Confidence 89999999999998531 1 11 244677776554 55554 589999999999997665
No 8
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.1e-35 Score=258.23 Aligned_cols=247 Identities=22% Similarity=0.374 Sum_probs=180.4
Q ss_pred hhccCCCcEEEEeCCCCC-------Ccccccc---ccCCCccEEEEceeeecCCCCcceeecCCCCCCCCCChhhHHHHH
Q 043511 22 KASQGAGGIAIYWGQNGN-------EGTLTST---CATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAI 91 (300)
Q Consensus 22 ~~~~~~~~vv~Ywg~~~~-------~~~l~~~---~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 91 (300)
.+.+ .+++++||++|.. +++..++ -.+..|+++..+|..-. +.+|. .| |......++.+++
T Consensus 21 ~~~~-~KvLvGyWHnw~sgaaDgyq~gs~adial~d~~~~ynvv~V~Fmk~~--g~ipt-----f~-P~~~~daeFr~~v 91 (332)
T COG3469 21 PDIS-NKVLVGYWHNWKSGAADGYQQGSSADIALADTPRNYNVVTVSFMKGA--GDIPT-----FK-PYNDPDAEFRAQV 91 (332)
T ss_pred cccc-cceEEEeeecccccccccccccceeeeEeccCCcccceEEEEEeecC--CCCcc-----cC-cCCCCHHHHHHHH
Confidence 5566 5699999999952 2222211 13678999999998643 33443 23 5555568999999
Q ss_pred HHHhhCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc------ccHHHHH
Q 043511 92 KSCQSRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST------LHWDDLA 165 (300)
Q Consensus 92 k~~q~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~------~~~~~l~ 165 (300)
+.++.+|+-||||+||+.++..+...+ -++|++.|. |.+++|||||+|||.|.... +-....+
T Consensus 92 ~aLnaeGkavllsLGGAdghIeL~~~q-E~~fv~eii----------rlietyGFDGLDiDLEq~ai~~~dnq~v~p~al 160 (332)
T COG3469 92 GALNAEGKAVLLSLGGADGHIELKAGQ-EQAFVNEII----------RLIETYGFDGLDIDLEQSAILAADNQTVIPAAL 160 (332)
T ss_pred HHhhccCcEEEEEccCccceEEeccch-HHHHHHHHH----------HHHHHhCCCccccchhhhhhhhcCCeeehHHHH
Confidence 999999999999999999998887665 578999985 78999999999999999752 2455677
Q ss_pred HHHHHhhc-CCCceEEEeCCCCCCCcc--hhhhhhh--cCCCceEEeeecCCCCCC--CC------CCChhhHHHHHHHH
Q 043511 166 RFLSAYSS-RGKKVYLTAAPQCPFPDR--FLGAALN--TGLFDYVWVQFYNNPPCQ--YS------SGNTQNLISSFNRW 232 (300)
Q Consensus 166 ~~Lr~~~~-~g~~~llTaAp~~~~~d~--~~~~~l~--~~~~D~invq~Yd~~~~~--~~------~~~~~~~~~~~~~w 232 (300)
+.+|++.+ .|++|+||+||..||... .|-+.|. ..++|||++|.||+++-. +. .++.+...+++-++
T Consensus 161 k~vk~hyk~~Gk~f~itMAPEfPYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGdg~w~~~~nawi~q~nd~~kesfly~ 240 (332)
T COG3469 161 KAVKDHYKNQGKNFFITMAPEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGDGNWVTESNAWIAQNNDMVKESFLYY 240 (332)
T ss_pred HHHHHHHHhcCCceEEEecCCCceecCCcccchHHHHHhhHHhhhhHHHhcCCCCCCCcCccccccccccHHHHHhHHHH
Confidence 77777654 589999999999998543 1223332 489999999999987432 11 11223333333333
Q ss_pred H--------c---cCCCCeEEEeeecCCCCCCCCCcChHHHHHHHhHhhh-cCCCCceEEEeeccccC
Q 043511 233 A--------S---SLRNGKLFLGLPAAPAAAGSGYIPPNVLTSQVLPQIK-TSPKYGGVMLWSKFFDD 288 (300)
Q Consensus 233 ~--------~---g~p~~KlvlG~p~~~~~a~~Gyv~~~~l~~~~~~~~~-~~~~~gGvm~W~~~~d~ 288 (300)
. + .+|.+|+++|+|.++++|.+|||.-..+...+...+| ...++.|||+|+++||+
T Consensus 241 ~~~slanGtr~f~~ipa~k~aiGLPsn~daAatGyv~dpniv~n~~~rlka~g~~ikGvMTWSvNWD~ 308 (332)
T COG3469 241 LTFSLANGTRGFEKIPADKFAIGLPSNVDAAATGYVKDPNIVDNAFNRLKATGCNIKGVMTWSVNWDA 308 (332)
T ss_pred hhhhhhcCcccceecccceeEEecCCCcchhhcCcCCCHHHHHHHHHHhhccCCcccceEEEEEeccc
Confidence 1 2 2699999999999999999999964444345556776 35679999999999998
No 9
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=1.5e-33 Score=265.25 Aligned_cols=245 Identities=22% Similarity=0.275 Sum_probs=160.0
Q ss_pred EEEEeCCCCCC--ccccc-cccCCCccEEEEceeeecCCCCcceeec-------CCCCC---CCCCChhhHHHHHHHH--
Q 043511 30 IAIYWGQNGNE--GTLTS-TCATGKYAYVNIAFLNKFGNGQTPEINL-------AGHCN---PAAGGCRVVSDAIKSC-- 94 (300)
Q Consensus 30 vv~Ywg~~~~~--~~l~~-~~~~~~~thii~aF~~~~~~~~~~~~~~-------~~~~~---~~~~~~~~~~~~Ik~~-- 94 (300)
|+|||..|+.. ..... .++.++||||+|||+.+.+++.....+- ..++. ............++.+
T Consensus 1 v~~Y~~~W~~~~~~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~ 80 (322)
T cd06548 1 VVGYFTNWGIYGRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLRKLKQ 80 (322)
T ss_pred CEEEeCCCcccCCCCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHHHHHH
Confidence 58999999742 11222 3678899999999999977654211100 00000 0011122222333333
Q ss_pred hhCCceEEEEEcCCCCCcCc----cChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc------------
Q 043511 95 QSRGIKVMLSLGGGVGSYSL----ASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST------------ 158 (300)
Q Consensus 95 q~~g~KVLlSiGG~~g~~~~----~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~------------ 158 (300)
+++++|||+|||||+.+..| .+++.|++|++++.+ ++++|+|||||||||+|..
T Consensus 81 ~~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi~siv~----------~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d 150 (322)
T cd06548 81 KNPHLKILLSIGGWTWSGGFSDAAATEASRAKFADSAVD----------FIRKYGFDGIDIDWEYPGSGGAPGNVARPED 150 (322)
T ss_pred hCCCCEEEEEEeCCCCCCCchhHhCCHHHHHHHHHHHHH----------HHHhcCCCeEEECCcCCCCCCCCCCCCChhH
Confidence 56889999999999865333 467889999999975 6899999999999999853
Q ss_pred -ccHHHHHHHHHHhhcC-----CCceEEEeCCCCCCC--cchhhhhhhcCCCceEEeeecCCCCC---C-------CCCC
Q 043511 159 -LHWDDLARFLSAYSSR-----GKKVYLTAAPQCPFP--DRFLGAALNTGLFDYVWVQFYNNPPC---Q-------YSSG 220 (300)
Q Consensus 159 -~~~~~l~~~Lr~~~~~-----g~~~llTaAp~~~~~--d~~~~~~l~~~~~D~invq~Yd~~~~---~-------~~~~ 220 (300)
++|..|+++||+.++. +++++||+|+.+... +...-..+ .+++||||+|.||.++. . +...
T Consensus 151 ~~~~~~ll~~Lr~~l~~~~~~~~~~~~Ls~av~~~~~~~~~~~~~~l-~~~vD~vnlMtYD~~g~w~~~~g~~spL~~~~ 229 (322)
T cd06548 151 KENFTLLLKELREALDALGAETGRKYLLTIAAPAGPDKLDKLEVAEI-AKYLDFINLMTYDFHGAWSNTTGHHSNLYASP 229 (322)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCceEEEEEccCCHHHHhcCCHHHH-hhcCCEEEEEEeeccCCCCCCCCCCCCCCCCC
Confidence 5788888888886642 467999999875311 11111234 48999999999996531 0 1000
Q ss_pred ----ChhhHHHHHHHHHc-cCCCCeEEEeeecCCCC-----------C-------C--CCCc---ChHHHHHHHhHhhhc
Q 043511 221 ----NTQNLISSFNRWAS-SLRNGKLFLGLPAAPAA-----------A-------G--SGYI---PPNVLTSQVLPQIKT 272 (300)
Q Consensus 221 ----~~~~~~~~~~~w~~-g~p~~KlvlG~p~~~~~-----------a-------~--~Gyv---~~~~l~~~~~~~~~~ 272 (300)
...++..+++.|.+ |+|++||+||+|++... + + ..+| +++.+...+ +.++
T Consensus 230 ~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~~~~~~D~~~~~~y~~~~~~~~~v~ydd~~Si~~K~-~~a~- 307 (322)
T cd06548 230 ADPPGGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTGYTRYWDEVAKAPYLYNPSTKTFISYDDPRSIKAKA-DYVK- 307 (322)
T ss_pred CCCCCCccHHHHHHHHHHcCCCHHHeEEEecccccccCCcEEEEcCCcceeEEEeCCCCeEEEeCCHHHHHHHH-HHHH-
Confidence 11235567788874 89999999999998532 0 1 1233 455555443 4444
Q ss_pred CCCCceEEEeecccc
Q 043511 273 SPKYGGVMLWSKFFD 287 (300)
Q Consensus 273 ~~~~gGvm~W~~~~d 287 (300)
..++||||+|++..|
T Consensus 308 ~~~LgGv~~W~l~~D 322 (322)
T cd06548 308 DKGLGGVMFWELSGD 322 (322)
T ss_pred hcCCccEEEEeccCC
Confidence 458999999999865
No 10
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=99.98 E-value=2.4e-31 Score=252.57 Aligned_cols=195 Identities=18% Similarity=0.253 Sum_probs=134.0
Q ss_pred cEEEEeCCCCCC---ccc-cccccCCCccEEEEceeeecCCCCcceeecCCCCCCCCCChhhHHHHHHHHhhCCceEEEE
Q 043511 29 GIAIYWGQNGNE---GTL-TSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMLS 104 (300)
Q Consensus 29 ~vv~Ywg~~~~~---~~l-~~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVLlS 104 (300)
+++|||.+|+.. .++ ++.++.++||||+|||+.+..++. +..... ...+ ..++.+ +++|||||
T Consensus 1 ~~v~Y~~~w~~~r~~~~~~~~~i~~~~~THi~yaf~~~~~~g~---l~~~~~-------~~~~-~~~~~~--k~lkvlls 67 (345)
T cd02878 1 KNIAYFEAYNLDRPCLNMDVTQIDTSKYTHIHFAFANITSDFS---VDVSSV-------QEQF-SDFKKL--KGVKKILS 67 (345)
T ss_pred CEEEEEChhhcCCCCCCCCHhHCCcccCCEEEEEeEeecCCCe---Eeeccc-------HHHH-HHHHhh--cCcEEEEE
Confidence 579999999641 133 356678999999999999876542 332211 1222 333332 35999999
Q ss_pred EcCCCCCcC------c---cChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc--------------ccH
Q 043511 105 LGGGVGSYS------L---ASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST--------------LHW 161 (300)
Q Consensus 105 iGG~~g~~~------~---~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~--------------~~~ 161 (300)
||||+.+.. | .+++.|++|++++.+ ++++|+|||||||||+|.. ++|
T Consensus 68 iGG~~~s~~~~~~~~f~~~~~~~~R~~Fi~si~~----------~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~ 137 (345)
T cd02878 68 FGGWDFSTSPSTYQIFRDAVKPANRDTFANNVVN----------FVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNY 137 (345)
T ss_pred EeCCCCCCCCccchhhHhhcCHHHHHHHHHHHHH----------HHHHcCCCceeecccCCcccCCCCCCCCChHHHHHH
Confidence 999974321 3 267889999999975 6899999999999999841 467
Q ss_pred HHHHHHHHHhhcCCCceEEEeCCCCCC-Ccchhh-hhhhcCCCceEEeeecCCCCC-C----C------------CCCCh
Q 043511 162 DDLARFLSAYSSRGKKVYLTAAPQCPF-PDRFLG-AALNTGLFDYVWVQFYNNPPC-Q----Y------------SSGNT 222 (300)
Q Consensus 162 ~~l~~~Lr~~~~~g~~~llTaAp~~~~-~d~~~~-~~l~~~~~D~invq~Yd~~~~-~----~------------~~~~~ 222 (300)
..|+++||+.+. ++++||+|+.+.. ....++ ..+ .+++||||||.||.++. . + ...+.
T Consensus 138 ~~ll~elr~~l~--~~~~ls~a~~~~~~~~~~yd~~~l-~~~vD~i~vMtYD~~g~w~~~~~~~~p~~p~~~~~~~~~~~ 214 (345)
T cd02878 138 LEFLKLLKSKLP--SGKSLSIAAPASYWYLKGFPIKDM-AKYVDYIVYMTYDLHGQWDYGNKWASPGCPAGNCLRSHVNK 214 (345)
T ss_pred HHHHHHHHHHhC--cCcEEEEEcCCChhhhcCCcHHHH-HhhCcEEEEEeecccCCcCccCCcCCCCCCcccccccCCCc
Confidence 778888887663 3578898865431 111122 234 48999999999997531 0 0 00011
Q ss_pred hhHHHHHHHHHc-cCCCCeEEEeeecCC
Q 043511 223 QNLISSFNRWAS-SLRNGKLFLGLPAAP 249 (300)
Q Consensus 223 ~~~~~~~~~w~~-g~p~~KlvlG~p~~~ 249 (300)
.+..++++.|.+ |+|++||+||+|++.
T Consensus 215 ~~~~~~v~~~~~~Gvp~~KlvlGip~YG 242 (345)
T cd02878 215 TETLDALSMITKAGVPSNKVVVGVASYG 242 (345)
T ss_pred hhHHHHHHHHHHcCCCHHHeEEeecccc
Confidence 235577888985 999999999999994
No 11
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=99.98 E-value=7e-31 Score=254.75 Aligned_cols=205 Identities=15% Similarity=0.179 Sum_probs=135.0
Q ss_pred cEEEEeCCCCC----Cccc-cccccCC--CccEEEEceeeecCCCCcceeecCCC-CCCCCCChhhHHHHHHHHhhCCce
Q 043511 29 GIAIYWGQNGN----EGTL-TSTCATG--KYAYVNIAFLNKFGNGQTPEINLAGH-CNPAAGGCRVVSDAIKSCQSRGIK 100 (300)
Q Consensus 29 ~vv~Ywg~~~~----~~~l-~~~~~~~--~~thii~aF~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Ik~~q~~g~K 100 (300)
+|+|||..|+. ..++ ++.++.. .||||+|||+.+.+++. .+...+. .+...+...++ ..+|. +++++|
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~--~~~~~~~~~~~~~~~~~~~-~~lk~-~~p~lK 76 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTY--KIKSLNEDLDLDKSHYRAI-TSLKR-KYPHLK 76 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCC--EEEecCcccchhhhHHHHH-HHHHh-hCCCCe
Confidence 58999999863 1233 4566664 49999999999876532 1221111 00000111222 33444 568999
Q ss_pred EEEEEcCCCCC------cC----ccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc------------
Q 043511 101 VMLSLGGGVGS------YS----LASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST------------ 158 (300)
Q Consensus 101 VLlSiGG~~g~------~~----~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~------------ 158 (300)
||||||||+.+ .. +.+++.|++|++++.+ ++++|+|||||||||||..
T Consensus 77 vllSiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~----------~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~ 146 (413)
T cd02873 77 VLLSVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHS----------LLKTYGFDGLDLAWQFPKNKPKKVRGTFGSA 146 (413)
T ss_pred EEEeecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHH----------HHHHcCCCCeEeeeeCCCCcccccccccchh
Confidence 99999999742 12 3467889999999975 6899999999999999841
Q ss_pred ----------------------ccHHHHHHHHHHhhcCCCceEEEeCCCCCCCc-chhh-hhhhcCCCceEEeeecCCCC
Q 043511 159 ----------------------LHWDDLARFLSAYSSRGKKVYLTAAPQCPFPD-RFLG-AALNTGLFDYVWVQFYNNPP 214 (300)
Q Consensus 159 ----------------------~~~~~l~~~Lr~~~~~g~~~llTaAp~~~~~d-~~~~-~~l~~~~~D~invq~Yd~~~ 214 (300)
++|..|+++||+.++. .+++||+|+...... ..++ ..+ .+++||||||.||.++
T Consensus 147 ~~~~~~~~~g~~~~~~~~~~d~~nf~~Ll~elr~~l~~-~~~~ls~av~~~~~~~~~~d~~~l-~~~vD~inlMtYD~~g 224 (413)
T cd02873 147 WHSFKKLFTGDSVVDEKAAEHKEQFTALVRELKNALRP-DGLLLTLTVLPHVNSTWYFDVPAI-ANNVDFVNLATFDFLT 224 (413)
T ss_pred hhhhhcccccccccCCCChhHHHHHHHHHHHHHHHhcc-cCcEEEEEecCCchhccccCHHHH-hhcCCEEEEEEecccC
Confidence 4678888888887642 457788875322111 1222 334 4899999999999653
Q ss_pred CC-----CCCCC----------hhhHHHHHHHHHc-cCCCCeEEEeeecCC
Q 043511 215 CQ-----YSSGN----------TQNLISSFNRWAS-SLRNGKLFLGLPAAP 249 (300)
Q Consensus 215 ~~-----~~~~~----------~~~~~~~~~~w~~-g~p~~KlvlG~p~~~ 249 (300)
.. ....+ ..++..+++.|.+ |+|++||+||+|++.
T Consensus 225 ~~~~~~~~~~~apL~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YG 275 (413)
T cd02873 225 PERNPEEADYTAPIYELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYG 275 (413)
T ss_pred CCCCCCccCcCCccCCCccccccccHHHHHHHHHHcCCCHHHeEEEEecce
Confidence 10 00000 1145677888985 999999999999983
No 12
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=99.97 E-value=2.4e-30 Score=227.67 Aligned_cols=195 Identities=25% Similarity=0.295 Sum_probs=142.6
Q ss_pred EEEEeCCCCCCcc-ccccccCCCccEEEEceeeecCCCCcceeecCCCCCCCCCChhhHHHHHHHHhhC--CceEEEEEc
Q 043511 30 IAIYWGQNGNEGT-LTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSR--GIKVMLSLG 106 (300)
Q Consensus 30 vv~Ywg~~~~~~~-l~~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~--g~KVLlSiG 106 (300)
|+|||.+|..... .+..++.+.||||+++|+.+..++.. .. +...........++.++++ |+||++|||
T Consensus 1 vv~y~~~w~~~~~~~~~~~~~~~~thvi~~f~~v~~~~~~---~~-----~~~~~~~~~~~~i~~l~~~~~g~kv~~sig 72 (210)
T cd00598 1 VICYYDGWSSGRGPDPTDIPLSLCTHIIYAFAEISSDGSL---NL-----FGDKSEEPLKGALEELASKKPGLKVLISIG 72 (210)
T ss_pred CEEEEccccccCCCChhhCCcccCCEEEEeeEEECCCCCE---ec-----ccCcccHHHHHHHHHHHHhCCCCEEEEEEc
Confidence 5899999975322 25667788999999999998766531 11 0111234455677777764 999999999
Q ss_pred CCCCCcC---ccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc------ccHHHHHHHHHHhhcCCCc
Q 043511 107 GGVGSYS---LASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST------LHWDDLARFLSAYSSRGKK 177 (300)
Q Consensus 107 G~~g~~~---~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~------~~~~~l~~~Lr~~~~~g~~ 177 (300)
|+..... ..+++.|++|++++.+ ++++|+|||||||||+|.. +++..|+++||+.+. .++
T Consensus 73 g~~~~~~~~~~~~~~~~~~f~~~~~~----------~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~-~~~ 141 (210)
T cd00598 73 GWTDSSPFTLASDPASRAAFANSLVS----------FLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALG-AAN 141 (210)
T ss_pred CCCCCCCchhhcCHHHHHHHHHHHHH----------HHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhc-ccC
Confidence 9985543 4677889999999975 6899999999999999864 456677777777653 237
Q ss_pred eEEEeCCCCCCCcc---hhhhhhhcCCCceEEeeecCCCCCCCCCCChhhHHHHHHHHHccCCCCeEEEeeecCCCCCCC
Q 043511 178 VYLTAAPQCPFPDR---FLGAALNTGLFDYVWVQFYNNPPCQYSSGNTQNLISSFNRWASSLRNGKLFLGLPAAPAAAGS 254 (300)
Q Consensus 178 ~llTaAp~~~~~d~---~~~~~l~~~~~D~invq~Yd~~~~~~~~~~~~~~~~~~~~w~~g~p~~KlvlG~p~~~~~a~~ 254 (300)
++||+||++..... +.-..+ .+++||+|+|+|| |++|+|++
T Consensus 142 ~~ls~a~~~~~~~~~~~~~~~~l-~~~vD~v~vm~Yd-----------------------------l~~g~~~~------ 185 (210)
T cd00598 142 YLLTIAVPASYFDLGYAYDVPAI-GDYVDFVNVMTYD-----------------------------LVLGVPFY------ 185 (210)
T ss_pred cEEEEEecCChHHhhccCCHHHH-HhhCCEEEEeeec-----------------------------ccccchhh------
Confidence 89999998753321 111334 4899999999998 99999997
Q ss_pred CCcChHHHHHHHhHhhhcCCCCceEEEeecccc
Q 043511 255 GYIPPNVLTSQVLPQIKTSPKYGGVMLWSKFFD 287 (300)
Q Consensus 255 Gyv~~~~l~~~~~~~~~~~~~~gGvm~W~~~~d 287 (300)
.+.. .++.++++ ++||||+|+++.|
T Consensus 186 ------s~~~-k~~~~~~~-~~gGv~~w~~~~d 210 (210)
T cd00598 186 ------SLGA-KAKYAKQK-GLGGVMIWELDQD 210 (210)
T ss_pred ------hHHH-HHHHHHHc-CCceEEEEeccCC
Confidence 4443 33555544 8999999999875
No 13
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=99.97 E-value=3.8e-30 Score=245.39 Aligned_cols=203 Identities=18% Similarity=0.178 Sum_probs=139.2
Q ss_pred EEEEeCCCCCC----ccc-cccccCCCccEEEEceeeecCCCCcceeecCCCCCCCCCChhhHHHHHHHH--hhCCceEE
Q 043511 30 IAIYWGQNGNE----GTL-TSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSC--QSRGIKVM 102 (300)
Q Consensus 30 vv~Ywg~~~~~----~~l-~~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~--q~~g~KVL 102 (300)
|+|||.+|+.. ..+ ++.++.++||||+|+|+.+..++.....+ +..+......+.+..+ +++++|||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g~~~~~~------~~~d~~~~~~~~~~~lk~~~p~lkvl 74 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIIILD------EWNDIDLGLYERFNALKEKNPNLKTL 74 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCCCEEecC------chhhhhhhHHHHHHHHHhhCCCceEE
Confidence 58999999732 232 35566889999999999987665322111 1110122333444333 45899999
Q ss_pred EEEcCCCC-CcC----ccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc--------ccHHHHHHHHH
Q 043511 103 LSLGGGVG-SYS----LASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST--------LHWDDLARFLS 169 (300)
Q Consensus 103 lSiGG~~g-~~~----~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~--------~~~~~l~~~Lr 169 (300)
+|||||+. +.. +.+++.|++|++++++ ++++|+|||||||||+|.. ++|..|+++||
T Consensus 75 isiGG~~~~~~~f~~~~~~~~~r~~fi~~iv~----------~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr 144 (362)
T cd02872 75 LAIGGWNFGSAKFSAMAASPENRKTFIKSAIA----------FLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELR 144 (362)
T ss_pred EEEcCCCCCcchhHHHhCCHHHHHHHHHHHHH----------HHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHH
Confidence 99999973 322 3467889999999975 6899999999999999863 47888888888
Q ss_pred HhhcC-CCceEEEeCCCCCCC--cchhh-hhhhcCCCceEEeeecCCCCC---CCCC--------CC-----hhhHHHHH
Q 043511 170 AYSSR-GKKVYLTAAPQCPFP--DRFLG-AALNTGLFDYVWVQFYNNPPC---QYSS--------GN-----TQNLISSF 229 (300)
Q Consensus 170 ~~~~~-g~~~llTaAp~~~~~--d~~~~-~~l~~~~~D~invq~Yd~~~~---~~~~--------~~-----~~~~~~~~ 229 (300)
+.++. +++++||+|+.+... ...++ ..+ .+++|+|+||.||.++. ...+ .+ ..++..++
T Consensus 145 ~~l~~~~~~~~ls~av~~~~~~~~~~~d~~~l-~~~vD~v~vmtYD~~~~~~~~~g~~spl~~~~~~~~~~~~~~v~~~v 223 (362)
T cd02872 145 EAFEPEAPRLLLTAAVSAGKETIDAAYDIPEI-SKYLDFINVMTYDFHGSWEGVTGHNSPLYAGSADTGDQKYLNVDYAI 223 (362)
T ss_pred HHHHhhCcCeEEEEEecCChHHHhhcCCHHHH-hhhcceEEEecccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHH
Confidence 87642 347999999875311 11121 334 48999999999996431 1000 00 01356778
Q ss_pred HHHHc-cCCCCeEEEeeecCC
Q 043511 230 NRWAS-SLRNGKLFLGLPAAP 249 (300)
Q Consensus 230 ~~w~~-g~p~~KlvlG~p~~~ 249 (300)
+.|.+ |+|++||+||+|++.
T Consensus 224 ~~~~~~gvp~~KlvlGlp~YG 244 (362)
T cd02872 224 KYWLSKGAPPEKLVLGIPTYG 244 (362)
T ss_pred HHHHHcCCCHHHeEecccccc
Confidence 88985 899999999999994
No 14
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=246.70 Aligned_cols=213 Identities=19% Similarity=0.202 Sum_probs=140.5
Q ss_pred CCcEEEEeCCCCCCcc---ccccccCCCccEEEEceeeecCCCCc--ceeecCCCC-----------CCCCC---ChhhH
Q 043511 27 AGGIAIYWGQNGNEGT---LTSTCATGKYAYVNIAFLNKFGNGQT--PEINLAGHC-----------NPAAG---GCRVV 87 (300)
Q Consensus 27 ~~~vv~Ywg~~~~~~~---l~~~~~~~~~thii~aF~~~~~~~~~--~~~~~~~~~-----------~~~~~---~~~~~ 87 (300)
..+|++||.+|+.-.+ ++.-+....+|||+|||+.+.+++.. -.+++...| +|..+ ++-..
T Consensus 37 ~~rvvgYY~sWs~~d~~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G~~~~ 116 (441)
T COG3325 37 QFKVVGYYTSWSQYDRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKGHFGA 116 (441)
T ss_pred CceEEEEecccccCCCcccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccchHHH
Confidence 3699999999974333 45555678999999999998766521 111111111 11111 12222
Q ss_pred HHHHHHHhhCCceEEEEEcCCCCCcCcc----ChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc-----
Q 043511 88 SDAIKSCQSRGIKVMLSLGGGVGSYSLA----SVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST----- 158 (300)
Q Consensus 88 ~~~Ik~~q~~g~KVLlSiGG~~g~~~~~----s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~----- 158 (300)
..++|+ +.+.+|+++|||||+.|-.|. +.+.|+.||++++ +++++|+|||||||||||++
T Consensus 117 L~~lk~-~~~d~k~l~SIGGWs~S~~F~~~aad~a~re~Fa~saV----------e~~r~~~FDGVDIDWEYP~~~~~~~ 185 (441)
T COG3325 117 LFDLKA-TYPDLKTLISIGGWSDSGGFSDMAADDASRENFAKSAV----------EFMRTYGFDGVDIDWEYPGSGGDAG 185 (441)
T ss_pred HHHHhh-hCCCceEEEeecccccCCCcchhhcCHHHHHHHHHHHH----------HHHHhcCCCceeeccccCCCCCCCC
Confidence 344554 567889999999998665553 4688999999987 57999999999999999963
Q ss_pred --------ccHHHHHHHHHHhhc-----CCCceEEEeCCCCC-CCcchhhhhhhcCCCceEEeeecCCCCC-C-------
Q 043511 159 --------LHWDDLARFLSAYSS-----RGKKVYLTAAPQCP-FPDRFLGAALNTGLFDYVWVQFYNNPPC-Q------- 216 (300)
Q Consensus 159 --------~~~~~l~~~Lr~~~~-----~g~~~llTaAp~~~-~~d~~~~~~l~~~~~D~invq~Yd~~~~-~------- 216 (300)
++|+.|+++||+.++ .||+|.||.|..+. +.-..+....-.+++||||+|+||.++. .
T Consensus 186 ~~~~~~d~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA~~as~~~l~~~~~~~~~~~vDyiNiMTYDf~G~Wn~~~Gh~a 265 (441)
T COG3325 186 NCGRPKDKANYVLLLQELRKKLDKAGVEDGRHYQLTIAAPASKDKLEGLNHAEIAQYVDYINIMTYDFHGAWNETLGHHA 265 (441)
T ss_pred CCCCcccHHHHHHHHHHHHHHHhhcccccCceEEEEEecCCchhhhhcccHHHHHHHHhhhheeeeeccccccccccccc
Confidence 589999999999764 37899999997653 1111222211158999999999996531 0
Q ss_pred --CC----C----CC--hhhHHH--HHHHHH--ccCCCCeEEEeeecCCC
Q 043511 217 --YS----S----GN--TQNLIS--SFNRWA--SSLRNGKLFLGLPAAPA 250 (300)
Q Consensus 217 --~~----~----~~--~~~~~~--~~~~w~--~g~p~~KlvlG~p~~~~ 250 (300)
|. + +. .+...+ .|-++. .++|+.||+||+|++..
T Consensus 266 ~Ly~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgR 315 (441)
T COG3325 266 ALYGTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGR 315 (441)
T ss_pred ccccCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeecccccc
Confidence 11 0 00 000111 122222 36899999999999963
No 15
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=99.97 E-value=2e-29 Score=237.63 Aligned_cols=202 Identities=23% Similarity=0.288 Sum_probs=140.1
Q ss_pred cEEEEeCCCCCCc-cc-cccccCCCccEEEEceeeecCCCCcceeecCCCCCCCCCChhhHHHHHHHHh--hCCceEEEE
Q 043511 29 GIAIYWGQNGNEG-TL-TSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQ--SRGIKVMLS 104 (300)
Q Consensus 29 ~vv~Ywg~~~~~~-~l-~~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q--~~g~KVLlS 104 (300)
+++|||..|...+ .+ .+..+.++||||+|+|+.+..++. +.+.+. .. ....+ ..++.++ ++++|||+|
T Consensus 1 ~~~~Y~~~w~~~~~~~~~~~~~~~~~thv~~~~~~~~~~g~---~~~~~~---~~-~~~~~-~~~~~l~~~~~~~kvl~s 72 (334)
T smart00636 1 RVVGYFTNWGVYGRNFPVDDIPASKLTHIIYAFANIDPDGT---VTIGDE---WA-DIGNF-GQLKALKKKNPGLKVLLS 72 (334)
T ss_pred CEEEEECchhccCCCCChhHCCcccCcEEEEeeeeeCCCCC---EeeCCc---ch-hhhhH-HHHHHHHHhCCCCEEEEE
Confidence 5899999996322 22 345568899999999999876542 333321 10 00122 2344333 479999999
Q ss_pred EcCCCCCcCc----cChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc-----ccHHHHHHHHHHhhcC-
Q 043511 105 LGGGVGSYSL----ASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST-----LHWDDLARFLSAYSSR- 174 (300)
Q Consensus 105 iGG~~g~~~~----~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~-----~~~~~l~~~Lr~~~~~- 174 (300)
||||+.+..| .+++.|++|+++|.+ ++++|+|||||||||+|.. ++|..|+++||+.+..
T Consensus 73 vgg~~~s~~f~~~~~~~~~r~~fi~~i~~----------~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~ 142 (334)
T smart00636 73 IGGWTESDNFSSMLSDPASRKKFIDSIVS----------FLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKE 142 (334)
T ss_pred EeCCCCCcchhHHHCCHHHHHHHHHHHHH----------HHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 9999764333 457889999999975 6899999999999999864 3688888888887642
Q ss_pred ---CCceEEEeCCCCCCC--cchhh--hhhhcCCCceEEeeecCCCCC-C--CCCCC-----h-----hhHHHHHHHHH-
Q 043511 175 ---GKKVYLTAAPQCPFP--DRFLG--AALNTGLFDYVWVQFYNNPPC-Q--YSSGN-----T-----QNLISSFNRWA- 233 (300)
Q Consensus 175 ---g~~~llTaAp~~~~~--d~~~~--~~l~~~~~D~invq~Yd~~~~-~--~~~~~-----~-----~~~~~~~~~w~- 233 (300)
+++++||+|+.+... +..+. ..+ .+++|||+||.||.++. + ..+.+ . .++..+++.|.
T Consensus 143 ~~~~~~~~lsi~v~~~~~~~~~~~~~~~~l-~~~vD~v~vm~YD~~~~~~~~~g~~spl~~~~~~~~~~~v~~~v~~~~~ 221 (334)
T smart00636 143 GAEGKGYLLTIAVPAGPDKIDKGYGDLPAI-AKYLDFINLMTYDFHGAWSNPTGHNAPLYAGPGDPEKYNVDYAVKYYLC 221 (334)
T ss_pred cccCCceEEEEEecCChHHHHhhhhhHHHH-HhhCcEEEEeeeccCCCCCCCCCCCCcCCCCCCCCCCccHHHHHHHHHH
Confidence 468999999886421 11122 334 48999999999996531 0 00100 0 14667888998
Q ss_pred ccCCCCeEEEeeecCC
Q 043511 234 SSLRNGKLFLGLPAAP 249 (300)
Q Consensus 234 ~g~p~~KlvlG~p~~~ 249 (300)
+|+|++||+||+|++.
T Consensus 222 ~gvp~~KlvlGip~YG 237 (334)
T smart00636 222 KGVPPSKLVLGIPFYG 237 (334)
T ss_pred cCCCHHHeEEeecccc
Confidence 5899999999999995
No 16
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=99.96 E-value=3.1e-30 Score=242.58 Aligned_cols=210 Identities=22% Similarity=0.212 Sum_probs=138.8
Q ss_pred CcEEEEeCCCCC--Cccc-cccccCCCccEEEEceeeecCCCCcceeecCCCCCCCCCChhhHHHHHHHHhhCCceEEEE
Q 043511 28 GGIAIYWGQNGN--EGTL-TSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMLS 104 (300)
Q Consensus 28 ~~vv~Ywg~~~~--~~~l-~~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVLlS 104 (300)
++|+|||.+|.. .+++ .+.+..+.||||+|+|+.+..++..........+.............++ +|++|+|||||
T Consensus 1 ~~vv~Y~~~~~~~~~~~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kvlls 79 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPGSYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNLKELK-AKNPGVKVLLS 79 (343)
T ss_dssp BEEEEEEEGGGGSSTGCSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHHHHHH-HHHTT-EEEEE
T ss_pred CEEEEEECCcCCCCCCCCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHHHHHH-hhccCceEEEE
Confidence 479999999953 2312 3455568999999999998877642110000010111111233346666 58899999999
Q ss_pred EcCCCCCc-Cc----cChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc-------ccHHHHHHHHHHhh
Q 043511 105 LGGGVGSY-SL----ASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST-------LHWDDLARFLSAYS 172 (300)
Q Consensus 105 iGG~~g~~-~~----~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~-------~~~~~l~~~Lr~~~ 172 (300)
|||+..+. .+ .+++.|+.|+++|.+ ++++|+|||||||||++.. .+|..|+++||+.+
T Consensus 80 igg~~~~~~~~~~~~~~~~~r~~f~~~i~~----------~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l 149 (343)
T PF00704_consen 80 IGGWGMSSDGFSQLLSNPAKRQNFINNIVS----------FLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKAL 149 (343)
T ss_dssp EEETTSSHHHHHHHHHSHHHHHHHHHHHHH----------HHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHH
T ss_pred eccccccccccccccccHHHHHHHHHhhhh----------hhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhh
Confidence 99996543 33 367789999999975 6899999999999999954 57888999998655
Q ss_pred cC-C---CceEEEeCC-CCCCCcchhh-hhhhcCCCceEEeeecCCCCC--C---CCC-----C---ChhhHHHHHHHHH
Q 043511 173 SR-G---KKVYLTAAP-QCPFPDRFLG-AALNTGLFDYVWVQFYNNPPC--Q---YSS-----G---NTQNLISSFNRWA 233 (300)
Q Consensus 173 ~~-g---~~~llTaAp-~~~~~d~~~~-~~l~~~~~D~invq~Yd~~~~--~---~~~-----~---~~~~~~~~~~~w~ 233 (300)
++ . ++++||+|. ..+.....+. ..+ .+++|||++|.||..+. . ... . ...++..+++.|+
T Consensus 150 ~~~~~~~~~~~ls~a~p~~~~~~~~~~~~~l-~~~vD~v~~m~yD~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 228 (343)
T PF00704_consen 150 KRANRSGKGYILSVAVPPSPDYYDKYDYKEL-AQYVDYVNLMTYDYHGPWSDVTGPNAPLYDSSWDSNYYSVDSAVQYWI 228 (343)
T ss_dssp HHHHHHHSTSEEEEEEECSHHHHTTHHHHHH-HTTSSEEEEETTSSSSTTSSBETTSSSSSHTTTSGTSSSHHHHHHHHH
T ss_pred cccccccceeEEeeccccccccccccccccc-cccccccccccccCCCCcccccccccccccCCccCCCceeeeehhhhc
Confidence 32 1 378999994 4332111111 223 48899999999986531 0 000 0 0113456788998
Q ss_pred c-cCCCCeEEEeeecCC
Q 043511 234 S-SLRNGKLFLGLPAAP 249 (300)
Q Consensus 234 ~-g~p~~KlvlG~p~~~ 249 (300)
+ |+|++||+||+|++.
T Consensus 229 ~~g~p~~Kl~lglp~yg 245 (343)
T PF00704_consen 229 KAGVPPSKLVLGLPFYG 245 (343)
T ss_dssp HTTSTGGGEEEEEESEE
T ss_pred cccCChhheeecCCccc
Confidence 6 899999999999884
No 17
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.4e-27 Score=232.67 Aligned_cols=204 Identities=19% Similarity=0.145 Sum_probs=135.1
Q ss_pred CcEEEEeCCCCC----C-ccccccccCCCccEEEEceeeecCCCCcceeecCCCCCCCCCChhhHHHHHHHHhhCCceEE
Q 043511 28 GGIAIYWGQNGN----E-GTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVM 102 (300)
Q Consensus 28 ~~vv~Ywg~~~~----~-~~l~~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVL 102 (300)
.+++||+..|+. + .......+..+|||++|||+.+..++. +.+... ........+.+.+|. +++++|||
T Consensus 52 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~---~~~~~~--~~~~~f~~~~~~~k~-~n~~vK~l 125 (432)
T KOG2806|consen 52 QNTVCEKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGY---VVFCGA--RTMNRFSSYNQTAKS-SNPTVKVM 125 (432)
T ss_pred ccccccceeEEEeCCCCCCCCccccChhhcCcceEEEeeeccccc---EEeccc--hhhhhhHHHHHHHHh-hCCCceEE
Confidence 455565544431 1 122344568999999999998875542 112111 111123445556665 56899999
Q ss_pred EEEcCC-CCCcCc----cChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCC--Cc---ccHHHHHHHHHHhh
Q 043511 103 LSLGGG-VGSYSL----ASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQG--ST---LHWDDLARFLSAYS 172 (300)
Q Consensus 103 lSiGG~-~g~~~~----~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p--~~---~~~~~l~~~Lr~~~ 172 (300)
|||||| ..+..| ++++.|+.|++++.+ ++++|+|||||||||+| .. .+|..|+++||+.+
T Consensus 126 lSIGG~~~ns~~fs~~~s~~~~r~~FI~Sii~----------fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~~~ 195 (432)
T KOG2806|consen 126 ISIGGSHGNSGLFSLVLSDRMIRAKFIESVVS----------FIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRSAF 195 (432)
T ss_pred EEecCCCCCccchhhhhcChHHHHHHHHHHHH----------HHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHHHH
Confidence 999999 444333 467899999999974 79999999999999999 42 68889999999866
Q ss_pred cC-CCc-----eEEEeCCCCC---CCcchhh-hhhhcCCCceEEeeecCCCCC-----CCCC-----CC---h---hhHH
Q 043511 173 SR-GKK-----VYLTAAPQCP---FPDRFLG-AALNTGLFDYVWVQFYNNPPC-----QYSS-----GN---T---QNLI 226 (300)
Q Consensus 173 ~~-g~~-----~llTaAp~~~---~~d~~~~-~~l~~~~~D~invq~Yd~~~~-----~~~~-----~~---~---~~~~ 226 (300)
.+ .+. .+|++++..+ +.+..++ ..| .+++||||||.||..+. ..++ .. . -+..
T Consensus 196 ~~~~~~~~~~~~~l~~~v~~~~~~~~~~~ydi~~i-~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd 274 (432)
T KOG2806|consen 196 ARETLKSPDTAKVLEAVVADSKQSAYSDGYDYENL-SKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVD 274 (432)
T ss_pred HHHhhccCCccceeeeccccCccchhhccCCHHHH-HhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchh
Confidence 42 111 2566665543 1122222 334 37999999999997641 1110 00 0 1345
Q ss_pred HHHHHHHc-cCCCCeEEEeeecC
Q 043511 227 SSFNRWAS-SLRNGKLFLGLPAA 248 (300)
Q Consensus 227 ~~~~~w~~-g~p~~KlvlG~p~~ 248 (300)
..+++|+. +.|++|++||+|++
T Consensus 275 ~~~ky~~~~~~~~~Kl~~gip~y 297 (432)
T KOG2806|consen 275 SLLKYWTEKGLPPSKLVLALPFY 297 (432)
T ss_pred hhHHHHhhcCCCchheEEEEecc
Confidence 67889996 99999999999998
No 18
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=99.95 E-value=8.1e-27 Score=219.10 Aligned_cols=204 Identities=15% Similarity=0.133 Sum_probs=135.2
Q ss_pred cEEEEeCCCCCCccccccccCCCccEEEEceeeecCCCCcceeecCCCCCCCCCChhhHHHHHHHHhhCCceEE--EEEc
Q 043511 29 GIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVM--LSLG 106 (300)
Q Consensus 29 ~vv~Ywg~~~~~~~l~~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVL--lSiG 106 (300)
.++|||..|...+..+...+..+||||+++|+.+.++++. +.+.+. ..........+|+ +++++||| +++|
T Consensus 4 ~~~~y~~~W~~~~~~~~~~~~~~lthv~~~f~~i~~~g~~--~~~~~~----~~~~~~~~~~lk~-~~~~lkvlp~i~~g 76 (318)
T cd02876 4 PVLGYVTPWNSHGYDVAKKFAAKFTHVSPVWLQIKRKGNK--FVIEGT----HDIDKGWIEEVRK-ANKNIKILPRVLFE 76 (318)
T ss_pred ceEEEEcCcCccchHHHHHHhccCCEecceEEEEecCCCe--eeeecC----cchhhHHHHHHHh-hCCCcEEEeEEEEC
Confidence 5789999996433223334577899999999998766532 111111 0001222345565 56899999 7789
Q ss_pred CCCCC-c--CccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeee-ccCCCc-------ccHHHHHHHHHHhhc-C
Q 043511 107 GGVGS-Y--SLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFD-IEQGST-------LHWDDLARFLSAYSS-R 174 (300)
Q Consensus 107 G~~g~-~--~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD-~E~p~~-------~~~~~l~~~Lr~~~~-~ 174 (300)
||+.+ + -+++++.|++|++++.+ ++++|+||||||| ||+|.. +++..|+++||+.++ .
T Consensus 77 g~~~~~f~~~~~~~~~R~~fi~s~~~----------~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~~~ 146 (318)
T cd02876 77 GWSYQDLQSLLNDEQEREKLIKLLVT----------TAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHSA 146 (318)
T ss_pred CCCHHHHHHHHcCHHHHHHHHHHHHH----------HHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHhhc
Confidence 99753 1 24578889999999974 7899999999999 999853 467788888887664 2
Q ss_pred CCceEEEeCCCCCC--Ccchh---h-hhhhcCCCceEEeeecCCCCCC-CCC-CChhhHHHHHHHHHc-c-CCCCeEEEe
Q 043511 175 GKKVYLTAAPQCPF--PDRFL---G-AALNTGLFDYVWVQFYNNPPCQ-YSS-GNTQNLISSFNRWAS-S-LRNGKLFLG 244 (300)
Q Consensus 175 g~~~llTaAp~~~~--~d~~~---~-~~l~~~~~D~invq~Yd~~~~~-~~~-~~~~~~~~~~~~w~~-g-~p~~KlvlG 244 (300)
++.+.++.+|.... +...+ + ..+ .+++||||||.||.++.. .++ .....+..++++|.+ + +|++||+||
T Consensus 147 ~~~l~~~v~~~~~~~~~~~~~~~~d~~~l-~~~vD~v~lMtYD~~~~~~~g~~apl~~v~~~v~~~~~~~~vp~~KlvlG 225 (318)
T cd02876 147 NLKLILVIPPPREKGNQNGLFTRKDFEKL-APHVDGFSLMTYDYSSPQRPGPNAPLSWVRSCLELLLPESGKKRAKILLG 225 (318)
T ss_pred CCEEEEEEcCccccccccccccccCHHHH-HhhccEEEEEeeccCCCCCCCCCCCcHHHHHHHHHHHhcCCCCHHHeEEe
Confidence 44444544443321 11111 1 234 489999999999976421 111 112345567788875 4 999999999
Q ss_pred eecCCC
Q 043511 245 LPAAPA 250 (300)
Q Consensus 245 ~p~~~~ 250 (300)
+|++..
T Consensus 226 ip~YG~ 231 (318)
T cd02876 226 LNFYGN 231 (318)
T ss_pred cccccc
Confidence 999953
No 19
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.94 E-value=2.8e-26 Score=208.80 Aligned_cols=223 Identities=19% Similarity=0.126 Sum_probs=149.3
Q ss_pred cEEEEeCCCCCC-----ccccccccCCCccEEEEceeeecCCCCcceeecCCCCCCCCCChhhHHHHHHHHhhCCceEEE
Q 043511 29 GIAIYWGQNGNE-----GTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVML 103 (300)
Q Consensus 29 ~vv~Ywg~~~~~-----~~l~~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVLl 103 (300)
...+||.+|.+. .+|.+. +..+|+|++.+..+..++... .........+.|+.+|++|+|||+
T Consensus 2 ~~~~y~~~~~~~~~~~~~~l~~~--pds~D~v~lf~~~~~~~~~~~----------~~~~~~~~~~~i~~l~~kG~KVl~ 69 (255)
T cd06542 2 ISFGYFEVWDDKGASLQESLLNL--PDSVDMVSLFAANINLDAATA----------VQFLLTNKETYIRPLQAKGTKVLL 69 (255)
T ss_pred eEEEEEEecCCcCcccccccccC--CCcceEEEEcccccCcccccc----------hhhhhHHHHHHHHHHhhCCCEEEE
Confidence 467999999642 345554 678999998333332221100 001134567899999999999999
Q ss_pred EEcCCCCCcC---ccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc----------ccHHHHHHHHHH
Q 043511 104 SLGGGVGSYS---LASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST----------LHWDDLARFLSA 170 (300)
Q Consensus 104 SiGG~~g~~~---~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~----------~~~~~l~~~Lr~ 170 (300)
||||+..... ..+++.|++|++++++ ++.+|+|||||||||++.. +++..|+++||+
T Consensus 70 sigg~~~~~~~~~~~~~~~~~~fa~~l~~----------~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~ 139 (255)
T cd06542 70 SILGNHLGAGFANNLSDAAAKAYAKAIVD----------TVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRK 139 (255)
T ss_pred EECCCCCCCCccccCCHHHHHHHHHHHHH----------HHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHH
Confidence 9999974333 3567889999999986 5789999999999999853 467788888887
Q ss_pred hhcCCCceEEEeCCCCCCCcchhhhhhhcCCCceEEeeecCCCCCCCCCCChhhHHHHHHHHHccCCCCeEEEeeecCCC
Q 043511 171 YSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNNPPCQYSSGNTQNLISSFNRWASSLRNGKLFLGLPAAPA 250 (300)
Q Consensus 171 ~~~~g~~~llTaAp~~~~~d~~~~~~l~~~~~D~invq~Yd~~~~~~~~~~~~~~~~~~~~w~~g~p~~KlvlG~p~~~~ 250 (300)
.+.. ++++||+++....... ....+ .+++||+++|+|+.+. ... .. .+..-..++|++|+++|+++...
T Consensus 140 ~~~~-~~kllt~~~~~~~~~~-~~~~~-~~~vDyv~~~~y~~~~-~~~-~~------~~~~~~~g~~~~k~i~~~~~~~~ 208 (255)
T cd06542 140 YMGP-TDKLLTIDGYGQALSN-DGEEV-SPYVDYVIYQYYGSSS-SST-QR------NWNTNSPKIPPEKMVYTESFEEE 208 (255)
T ss_pred HhCc-CCcEEEEEecCCchhc-CHHHH-HHhCCEEEeeccCCCC-ccC-Cc------ccccccCCCCHHHceeeeeeecc
Confidence 6632 3688999876543211 12233 4799999999999763 111 11 11122358999999999999753
Q ss_pred CCCCCCcChHHHHHHHhHhhhcCCCCceEEEeeccccC
Q 043511 251 AAGSGYIPPNVLTSQVLPQIKTSPKYGGVMLWSKFFDD 288 (300)
Q Consensus 251 ~a~~Gyv~~~~l~~~~~~~~~~~~~~gGvm~W~~~~d~ 288 (300)
. +..+...+.. +.+.+.....+||+|+|.++.|-
T Consensus 209 ~---~~~~~~~~~~-~A~~~~~~~~~gG~~~y~~~~dy 242 (255)
T cd06542 209 N---GGNSGSSAEQ-YARWTPAKGGKGGIGTYALDRDY 242 (255)
T ss_pred c---CCCcchhHHH-HHhcCcccCceEEEEEEecCCCc
Confidence 2 2233333332 23444433489999999999874
No 20
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=99.93 E-value=6.1e-24 Score=199.00 Aligned_cols=193 Identities=16% Similarity=0.209 Sum_probs=130.9
Q ss_pred cEEEEeCCCCCC--ccccccccCCCccEEEEceeeecCCCCcceeecCCCCCCCCCChhhHHHHHHHHhhCCceEEEEEc
Q 043511 29 GIAIYWGQNGNE--GTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMLSLG 106 (300)
Q Consensus 29 ~vv~Ywg~~~~~--~~l~~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVLlSiG 106 (300)
.+++|+..|... ..+... ..++|||...+..+.+++. +.+. ...+.++.+|++++|||++||
T Consensus 3 ~~~g~~~~~~~~~~~~~~~~--~~~lt~v~p~w~~~~~~g~-----~~~~---------~~~~~~~~a~~~~~kv~~~i~ 66 (313)
T cd02874 3 EVLGYYTPRNGSDYESLRAN--APYLTYIAPFWYGVDADGT-----LTGL---------PDERLIEAAKRRGVKPLLVIT 66 (313)
T ss_pred eEEEEEecCCCchHHHHHHh--cCCCCEEEEEEEEEcCCCC-----CCCC---------CCHHHHHHHHHCCCeEEEEEe
Confidence 478999887543 234454 4679999998887766552 1111 113567777888999999999
Q ss_pred CCCCC-c-------CccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc---ccHHHHHHHHHHhhcCC
Q 043511 107 GGVGS-Y-------SLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST---LHWDDLARFLSAYSSRG 175 (300)
Q Consensus 107 G~~g~-~-------~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~---~~~~~l~~~Lr~~~~~g 175 (300)
|+.+. . -+.+++.|++|++++.+ ++++|+|||||||||++.. ++|..|+++||+.++.
T Consensus 67 ~~~~~~~~~~~~~~~l~~~~~r~~fi~~iv~----------~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~~- 135 (313)
T cd02874 67 NLTNGNFDSELAHAVLSNPEARQRLINNILA----------LAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLHP- 135 (313)
T ss_pred cCCCCCCCHHHHHHHhcCHHHHHHHHHHHHH----------HHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhhh-
Confidence 99631 1 14567889999999975 6899999999999999864 5688888888887642
Q ss_pred CceEEEeCC--CCCCCc-----chhh-hhhhcCCCceEEeeecCCCCCCCCCC---ChhhHHHHHHHHHccCCCCeEEEe
Q 043511 176 KKVYLTAAP--QCPFPD-----RFLG-AALNTGLFDYVWVQFYNNPPCQYSSG---NTQNLISSFNRWASSLRNGKLFLG 244 (300)
Q Consensus 176 ~~~llTaAp--~~~~~d-----~~~~-~~l~~~~~D~invq~Yd~~~~~~~~~---~~~~~~~~~~~w~~g~p~~KlvlG 244 (300)
++++||.+. ..+... ..++ ..+ .+++|++++|.||.++....++ +...+...++.+.+++|++||+||
T Consensus 136 ~~~~lsv~~~p~~~~~~~~~~~~~~~~~~l-~~~vD~v~lm~YD~~~~~~~~gp~a~~~~~~~~~~~~~~gvp~~KlvlG 214 (313)
T cd02874 136 AGYTLSTAVVPKTSADQFGNWSGAYDYAAI-GKIVDFVVLMTYDWHWRGGPPGPVAPIGWVERVLQYAVTQIPREKILLG 214 (313)
T ss_pred cCcEEEEEecCccccccccccccccCHHHH-HhhCCEEEEEEeccCCCCCCCCccCChHHHHHHHHHHHhcCCHHHEEEe
Confidence 345666543 322110 1111 334 4789999999999764211111 112334455566689999999999
Q ss_pred eecCC
Q 043511 245 LPAAP 249 (300)
Q Consensus 245 ~p~~~ 249 (300)
+|++.
T Consensus 215 ip~YG 219 (313)
T cd02874 215 IPLYG 219 (313)
T ss_pred ecccc
Confidence 99985
No 21
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=99.90 E-value=5.7e-23 Score=196.07 Aligned_cols=148 Identities=16% Similarity=0.216 Sum_probs=107.7
Q ss_pred HHHHHHhhCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc------ccHH
Q 043511 89 DAIKSCQSRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST------LHWD 162 (300)
Q Consensus 89 ~~Ik~~q~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~------~~~~ 162 (300)
+.++.+|++|+||+++ |+.. ...+.+++.|++|++++++ ++++|+|||||||||+|.. ++|.
T Consensus 68 ~~~~~A~~~~v~v~~~-~~~~-~~~l~~~~~R~~fi~siv~----------~~~~~gfDGIdIDwE~p~~~~~~d~~~~t 135 (358)
T cd02875 68 ELLCYAHSKGVRLVLK-GDVP-LEQISNPTYRTQWIQQKVE----------LAKSQFMDGINIDIEQPITKGSPEYYALT 135 (358)
T ss_pred HHHHHHHHcCCEEEEE-CccC-HHHcCCHHHHHHHHHHHHH----------HHHHhCCCeEEEcccCCCCCCcchHHHHH
Confidence 6677889999999998 3322 1235688899999999975 6899999999999999953 5778
Q ss_pred HHHHHHHHhhc-CCCceEEEeCCCCC-C-Ccc-hhh-hhhhcCCCceEEeeecCCCCC------CCCCC-ChhhHHHHHH
Q 043511 163 DLARFLSAYSS-RGKKVYLTAAPQCP-F-PDR-FLG-AALNTGLFDYVWVQFYNNPPC------QYSSG-NTQNLISSFN 230 (300)
Q Consensus 163 ~l~~~Lr~~~~-~g~~~llTaAp~~~-~-~d~-~~~-~~l~~~~~D~invq~Yd~~~~------~~~~~-~~~~~~~~~~ 230 (300)
.|+++||+.++ .+++++||+++... . .+. .++ ..+ .+++||||||.||.++- ...+. .......+++
T Consensus 136 ~llkelr~~l~~~~~~~~Lsvav~~~p~~~~~~~yd~~~l-~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~~v~~~v~ 214 (358)
T cd02875 136 ELVKETTKAFKKENPGYQISFDVAWSPSCIDKRCYDYTGI-ADASDFLVVMDYDEQSQIWGKECIAGANSPYSQTLSGYN 214 (358)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEEecCcccccccccCHHHH-HhhCCEeeEEeecccCCCCCCCCCCCCCCCchhHHHHHH
Confidence 88888888664 35678899876542 1 111 122 344 48999999999997531 11111 1234556788
Q ss_pred HHHc-cCCCCeEEEeeecCC
Q 043511 231 RWAS-SLRNGKLFLGLPAAP 249 (300)
Q Consensus 231 ~w~~-g~p~~KlvlG~p~~~ 249 (300)
+|++ |+|++||+||+|++.
T Consensus 215 ~~~~~gvp~~KLvLGip~YG 234 (358)
T cd02875 215 NFTKLGIDPKKLVMGLPWYG 234 (358)
T ss_pred HHHHcCCCHHHeEEEeCCCC
Confidence 8885 899999999999995
No 22
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.88 E-value=8.5e-22 Score=183.01 Aligned_cols=229 Identities=20% Similarity=0.207 Sum_probs=142.0
Q ss_pred ccccccccCCCccEEEEceeeecCCCCcceeecCCCCCCCCCChhhHHHHHHHHhhCCceEEEEEcCCCCCcCccChhhH
Q 043511 41 GTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMLSLGGGVGSYSLASVADA 120 (300)
Q Consensus 41 ~~l~~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVLlSiGG~~g~~~~~s~~~~ 120 (300)
.++.++|..++|+||+|||+...+++ .| .+.++. ....+..+.++|+.||++|+||+||||||.++.-..+..+|
T Consensus 15 ~~l~~~~~~~g~~~v~lAFi~~~~~~-~~--~w~g~~--~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~ 89 (294)
T cd06543 15 PDLTTYAAATGVKAFTLAFIVASGGC-KP--AWGGSY--PLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSA 89 (294)
T ss_pred cCHHHHHHHcCCCEEEEEEEEcCCCC-cc--cCCCCC--CcccchhHHHHHHHHHHcCCeEEEEecCCCCCccccCcccH
Confidence 34667888899999999999875433 22 122211 11126677899999999999999999999986533467789
Q ss_pred HHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCccc---HHHHHHHHHHhhcCCCceEEEeCCCC-CC---Ccc--
Q 043511 121 KNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLH---WDDLARFLSAYSSRGKKVYLTAAPQC-PF---PDR-- 191 (300)
Q Consensus 121 ~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~~~---~~~l~~~Lr~~~~~g~~~llTaAp~~-~~---~d~-- 191 (300)
++|++++.+ ++++|+|||||||||+|..++ ..+++++|+++++.-+++.||.+... |. ++.
T Consensus 90 ~~~~~a~~~----------~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~p~gl~~~g~~ 159 (294)
T cd06543 90 DQLAAAYQK----------VIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFTLPVLPTGLTPDGLN 159 (294)
T ss_pred HHHHHHHHH----------HHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEecCCCCCCCChhHHH
Confidence 999998864 789999999999999997543 57788888877653345566665432 21 121
Q ss_pred hhhhhhh-cCCCceEEeeecCCCCCCCCCCC-hhhH---HHHHHHHHcc-CC-------CCeEEEee-ecCCCCCCCC-C
Q 043511 192 FLGAALN-TGLFDYVWVQFYNNPPCQYSSGN-TQNL---ISSFNRWASS-LR-------NGKLFLGL-PAAPAAAGSG-Y 256 (300)
Q Consensus 192 ~~~~~l~-~~~~D~invq~Yd~~~~~~~~~~-~~~~---~~~~~~w~~g-~p-------~~KlvlG~-p~~~~~a~~G-y 256 (300)
.+..+.. .-.+|+||||.||.++. +..++ .+.. .++...+.+. +| -.|| |+ |--..+...+ .
T Consensus 160 ~l~~a~~~Gv~~d~VNiMtmDyg~~-~~~~~mg~~a~~aa~~~~~ql~~~~~~~s~~~~~~~i--g~TpMiG~nD~~~e~ 236 (294)
T cd06543 160 VLEAAAANGVDLDTVNIMTMDYGSS-AGSQDMGAAAISAAESLHDQLKDLYPKLSDAELWAMI--GVTPMIGVNDVGSEV 236 (294)
T ss_pred HHHHHHHcCCCcceeeeeeecCCCC-CCcccHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHc--cccccccccCCCCce
Confidence 1222222 23799999999997642 11111 1111 1122222221 11 1122 21 1111111123 5
Q ss_pred cChHHHHHHHhHhhhcCCCCceEEEeeccccCC
Q 043511 257 IPPNVLTSQVLPQIKTSPKYGGVMLWSKFFDDQ 289 (300)
Q Consensus 257 v~~~~l~~~~~~~~~~~~~~gGvm~W~~~~d~~ 289 (300)
.+.++.. ++... .+..++|.+-+|+++-|..
T Consensus 237 ft~~da~-~~~~f-A~~~~l~~~s~Ws~~RD~~ 267 (294)
T cd06543 237 FTLADAQ-TLVDF-AKEKGLGRLSMWSLNRDRP 267 (294)
T ss_pred eeHHHHH-HHHHH-HHhCCCCeEeeeeccCCCC
Confidence 5777765 34444 3447899999999998865
No 23
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=99.85 E-value=4.8e-20 Score=171.87 Aligned_cols=196 Identities=15% Similarity=0.112 Sum_probs=124.6
Q ss_pred EEEEeCCCCCCc--cccccccCCCccEEEEceeeecCCCCcceeecCCCCCCCCCChhhHHHHHHHHh--hCCceEEEEE
Q 043511 30 IAIYWGQNGNEG--TLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQ--SRGIKVMLSL 105 (300)
Q Consensus 30 vv~Ywg~~~~~~--~l~~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q--~~g~KVLlSi 105 (300)
+.+||..|...+ .+... ...+|||.--+..+.+.++. +. .. . .+.....++..| .+-++++.++
T Consensus 2 ~l~~~~~w~~~s~~sl~~~--~~~l~~vsP~W~~~~~~~g~--l~--~~---~---d~~~~~~~~~~k~~~~~l~~~~~~ 69 (298)
T cd06549 2 ALAFYTPWDDASFASLKRH--APRLDWLVPEWLNLTGPEGR--ID--VF---V---DPQGVAIIAAAKAHPKVLPLVQNI 69 (298)
T ss_pred eeEEEecCChhhHHHHHHh--hccCCEEeceeEEEecCCCc--ee--cc---C---ChHHHHHHHHHHcCCceeEEEEec
Confidence 468888874332 34455 35789998877776533221 11 11 0 112223344433 3446777899
Q ss_pred cCCCCCc-----CccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc---ccHHHHHHHHHHhhcCCCc
Q 043511 106 GGGVGSY-----SLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST---LHWDDLARFLSAYSSRGKK 177 (300)
Q Consensus 106 GG~~g~~-----~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~---~~~~~l~~~Lr~~~~~g~~ 177 (300)
+|+..+. -+.+++.|++|++++.+ ++++|+|||||||||++.. ++|..|+++||+.++. ++
T Consensus 70 ~~~~~~~~~~~~~l~~~~~R~~fi~~iv~----------~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~-~~ 138 (298)
T cd06549 70 SGGAWDGKNIARLLADPSARAKFIANIAA----------YLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPA-QG 138 (298)
T ss_pred CCCCCCHHHHHHHhcCHHHHHHHHHHHHH----------HHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhh-cC
Confidence 8875331 24678889999999975 6899999999999999864 5778888888876642 34
Q ss_pred eEEEeCCCCCCCcchhhhhhhcCCCceEEeeecCCCCCCCCCC---ChhhHHHHHHHHHccCCCCeEEEeeecCCC
Q 043511 178 VYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNNPPCQYSSG---NTQNLISSFNRWASSLRNGKLFLGLPAAPA 250 (300)
Q Consensus 178 ~llTaAp~~~~~d~~~~~~l~~~~~D~invq~Yd~~~~~~~~~---~~~~~~~~~~~w~~g~p~~KlvlG~p~~~~ 250 (300)
+.||+++.+. +..+--..+ ..++|+++||.||.+.....++ +.+.+...++...+++|++||+||+|++..
T Consensus 139 ~~lsv~v~~~-~~~~d~~~l-~~~~D~v~lMtYD~~~~~~~~gp~a~~~~~~~~~~~~~~~vp~~KlvlGip~YG~ 212 (298)
T cd06549 139 KQLTVTVPAD-EADWNLKAL-ARNADKLILMAYDEHYQGGAPGPIASQDWFESNLAQAVKKLPPEKLIVALGSYGY 212 (298)
T ss_pred cEEEEEecCC-CCCCCHHHH-HHhCCEEEEEEeccCCCCCCCCCCCChhhHHHHHHHHHhCCCHHHEEEEecccCc
Confidence 6777775542 222211334 4799999999999753111111 112233344555579999999999999954
No 24
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=98.95 E-value=1.2e-08 Score=97.35 Aligned_cols=151 Identities=17% Similarity=0.170 Sum_probs=95.8
Q ss_pred HHHHHHhhCCceEEEEE--cC---CCCC-----cCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc
Q 043511 89 DAIKSCQSRGIKVMLSL--GG---GVGS-----YSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST 158 (300)
Q Consensus 89 ~~Ik~~q~~g~KVLlSi--GG---~~g~-----~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~ 158 (300)
..++..|.+++|.++.| ++ .+.+ .-+.++..++++.+.+.. .++.+|+.|+.||+|+-.+
T Consensus 151 ~~~~~~~~~~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~----------~l~~~Gyrgv~iDfE~v~~ 220 (423)
T COG3858 151 NVIEIAQCRKIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIIT----------LLDARGYRGVNIDFENVGP 220 (423)
T ss_pred chhhhhhhcccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHH----------HHHhcCcccEEechhhCCH
Confidence 34455566677766544 55 1111 124567778888888865 5788999999999998765
Q ss_pred ---ccHHHHHHHHHHhhcCCCceEEEeCCCCCCCcc----hh---h-hhhhcCCCceEEeeecCCCCCCCCCCCh---hh
Q 043511 159 ---LHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDR----FL---G-AALNTGLFDYVWVQFYNNPPCQYSSGNT---QN 224 (300)
Q Consensus 159 ---~~~~~l~~~Lr~~~~~g~~~llTaAp~~~~~d~----~~---~-~~l~~~~~D~invq~Yd~~~~~~~~~~~---~~ 224 (300)
+-|..|++++|+.+.+ .++.+|.|+.+-.++. +. + .++ ++..|||.+|.||.+.....++.. .-
T Consensus 221 ~DR~~yt~flR~~r~~l~~-~G~~~siAvaakt~~~~~G~W~~~~dy~a~-Gkiad~v~lMtYd~h~~gG~PG~vA~i~~ 298 (423)
T COG3858 221 GDRELYTDFLRQVRDALHS-GGYTVSIAVAAKTSDLQVGSWHGAYDYVAL-GKIADFVILMTYDWHYSGGPPGPVASIGW 298 (423)
T ss_pred HHHHHHHHHHHHHHHHhcc-CCeEEEEEecCCCCCCcCccccchhhhhhh-ceeeeEEEEEEeccCcCCCCCCcccCchh
Confidence 4677888888887643 4577777766532221 11 1 222 688999999999965221122221 12
Q ss_pred HHHHHHHHHccCCCCeEEEeeecCCCC
Q 043511 225 LISSFNRWASSLRNGKLFLGLPAAPAA 251 (300)
Q Consensus 225 ~~~~~~~w~~g~p~~KlvlG~p~~~~~ 251 (300)
+...+++-+.-+|++||+||+|++..+
T Consensus 299 vr~~ieya~T~iP~~Kv~mGip~YGYD 325 (423)
T COG3858 299 VRKVIEYALTVIPAEKVMMGIPLYGYD 325 (423)
T ss_pred HhhhhhhhheecchHHeEEcccccccc
Confidence 223233333468999999999999644
No 25
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.06 E-value=0.0033 Score=59.24 Aligned_cols=153 Identities=16% Similarity=0.198 Sum_probs=92.2
Q ss_pred hhhHHHHHHHHhhCCceEEEEE--c--CCC-CC-------------------c-------CccC--hhhHHHHHHHHHHh
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSL--G--GGV-GS-------------------Y-------SLAS--VADAKNVADYLWNN 130 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSi--G--G~~-g~-------------------~-------~~~s--~~~~~~fa~~l~~~ 130 (300)
..-|...|++||++|++|-.-+ | ... +. + .+-+ ..+.++|...++
T Consensus 69 ~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v-- 146 (311)
T PF02638_consen 69 FDPLEFMIEEAHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIV-- 146 (311)
T ss_pred ccHHHHHHHHHHHcCCEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHH--
Confidence 5567889999999999998655 2 111 00 0 0001 123444444443
Q ss_pred hcCCCCCcccccccccceeeee-ccCCCc----------------------------------ccHHHHHHHHHHhhc-C
Q 043511 131 FLGGTSSSRPLGAAVLDGIDFD-IEQGST----------------------------------LHWDDLARFLSAYSS-R 174 (300)
Q Consensus 131 f~~g~s~~r~~~~~~~DGiDiD-~E~p~~----------------------------------~~~~~l~~~Lr~~~~-~ 174 (300)
.+++++|.+|||-|| +-||.. ++...|+++|++..+ .
T Consensus 147 -------~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~ 219 (311)
T PF02638_consen 147 -------KEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAI 219 (311)
T ss_pred -------HHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367899999999999 556420 133567777776433 3
Q ss_pred CCceEEEeCCCCCCCcc---hhh---hhhhcCCCceEEeeecCCCCCCCCCCChhhHHHHHHHHHccC--CCCeEEEeee
Q 043511 175 GKKVYLTAAPQCPFPDR---FLG---AALNTGLFDYVWVQFYNNPPCQYSSGNTQNLISSFNRWASSL--RNGKLFLGLP 246 (300)
Q Consensus 175 g~~~llTaAp~~~~~d~---~~~---~~l~~~~~D~invq~Yd~~~~~~~~~~~~~~~~~~~~w~~g~--p~~KlvlG~p 246 (300)
.+...++++|...+... .+. .-+..+.+|+|.+|.|... .+ . ....+......|.+.. ...+|++|+.
T Consensus 220 kP~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~-~~--~-~~~~~~~~~~~w~~~~~~~~v~ly~G~~ 295 (311)
T PF02638_consen 220 KPWVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWSD-FS--H-FTAPYEQLAKWWAKQVKPTNVHLYIGLA 295 (311)
T ss_pred CCCCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeecccc-cc--h-hHHHHHHHHHHHHHhhcCCCceEEEccC
Confidence 46788999988654211 111 2334689999999999642 11 1 1122333344565533 3569999999
Q ss_pred cCC
Q 043511 247 AAP 249 (300)
Q Consensus 247 ~~~ 249 (300)
.+.
T Consensus 296 ~y~ 298 (311)
T PF02638_consen 296 LYK 298 (311)
T ss_pred cCC
Confidence 985
No 26
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=96.48 E-value=0.003 Score=60.20 Aligned_cols=75 Identities=23% Similarity=0.143 Sum_probs=54.6
Q ss_pred HHHHHHhhCCceEEEEEcC-CCCCc-----CccC-hhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCC-c--
Q 043511 89 DAIKSCQSRGIKVMLSLGG-GVGSY-----SLAS-VADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGS-T-- 158 (300)
Q Consensus 89 ~~Ik~~q~~g~KVLlSiGG-~~g~~-----~~~s-~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~-~-- 158 (300)
.-|..+|++|+|||-.|-= |.+.. -+.+ ++.+..+|+.|++ +++.|||||+-||+|... .
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~----------lak~yGfDGw~iN~E~~~~~~~ 119 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVE----------VAKYYGFDGWLINIETELGDAE 119 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHH----------HHHHhCCCceEeeeeccCCcHH
Confidence 4666779999999977741 11111 1334 6678889998875 689999999999999876 2
Q ss_pred --ccHHHHHHHHHHhhc
Q 043511 159 --LHWDDLARFLSAYSS 173 (300)
Q Consensus 159 --~~~~~l~~~Lr~~~~ 173 (300)
+.+..|+++|++..+
T Consensus 120 ~~~~l~~F~~~L~~~~~ 136 (339)
T cd06547 120 KAKRLIAFLRYLKAKLH 136 (339)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 577788888887653
No 27
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=94.93 E-value=0.19 Score=47.08 Aligned_cols=151 Identities=17% Similarity=0.142 Sum_probs=77.5
Q ss_pred cChhhHHHHHHHHHHhhcCCCCCcccccccccceeeee-ccCCCc----ccHH----HHHHHHHHhhcCCCceEEEeCCC
Q 043511 115 ASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFD-IEQGST----LHWD----DLARFLSAYSSRGKKVYLTAAPQ 185 (300)
Q Consensus 115 ~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD-~E~p~~----~~~~----~l~~~Lr~~~~~g~~~llTaAp~ 185 (300)
.+++.|+...+.+++ ++++++|||+-++ |-.-.. ...- .+.++|++ +.=..+++..|.
T Consensus 164 ~ke~l~ekv~~tlv~----------~ck~~~fdGlVlevwsq~a~~i~d~~al~~v~hl~k~Lhk---q~l~~iLvvPp~ 230 (392)
T KOG2091|consen 164 VKEALREKVGQTLVN----------FCKKHGFDGLVLEVWSQLADVIADKDALELVEHLGKALHK---QELQAILVVPPV 230 (392)
T ss_pred hhHHHHHHHHHHHHH----------HHHHcCCCeeeHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---hheEEEEEeCCC
Confidence 456778888888875 6899999999986 332211 1111 23333332 123467777663
Q ss_pred CCC-Ccch--hh-hhhh--cCCCceEEeeecCCCCCCCCCCC-hhhHHHHHHHHHc--cCCCCeEEEeeecCCCCC----
Q 043511 186 CPF-PDRF--LG-AALN--TGLFDYVWVQFYNNPPCQYSSGN-TQNLISSFNRWAS--SLRNGKLFLGLPAAPAAA---- 252 (300)
Q Consensus 186 ~~~-~d~~--~~-~~l~--~~~~D~invq~Yd~~~~~~~~~~-~~~~~~~~~~w~~--g~p~~KlvlG~p~~~~~a---- 252 (300)
-.. .++. +. +.++ ...+|.+.+|+||.........+ +...+..--.... .....||++|+-+|...-
T Consensus 231 ~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~~~pg~nap~~wi~~~l~~l~~~s~~r~KiLlGlNFYG~d~~~gd 310 (392)
T KOG2091|consen 231 IEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLVQGPGPNAPLEWIRHCLHHLGGSSAKRPKILLGLNFYGNDFNLGD 310 (392)
T ss_pred CcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccccCCCCCCCHHHHHHHHHHhCCccccccceeEeeeccccccccCC
Confidence 211 1111 11 1111 46889999999996532211111 1222221111111 123579999999985321
Q ss_pred CCCCcChHHHHHHHhHhhhcCCCCceEEEeecc
Q 043511 253 GSGYIPPNVLTSQVLPQIKTSPKYGGVMLWSKF 285 (300)
Q Consensus 253 ~~Gyv~~~~l~~~~~~~~~~~~~~gGvm~W~~~ 285 (300)
|.+-++... .++.+|... =+|.|+-.
T Consensus 311 g~~~IT~~r----YL~lLk~~k---~~~~~Dee 336 (392)
T KOG2091|consen 311 GGEAITAKR----YLQLLKGEK---SVFKFDEE 336 (392)
T ss_pred CCCceeHHH----HHHHHhccC---cceeeccc
Confidence 234444443 344555332 25667643
No 28
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=93.59 E-value=0.069 Score=50.35 Aligned_cols=74 Identities=20% Similarity=0.145 Sum_probs=44.5
Q ss_pred HHHHHHhhCCceEEEEEc-CCCCCc-----Ccc-ChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc---
Q 043511 89 DAIKSCQSRGIKVMLSLG-GGVGSY-----SLA-SVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST--- 158 (300)
Q Consensus 89 ~~Ik~~q~~g~KVLlSiG-G~~g~~-----~~~-s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~--- 158 (300)
.-|.++|+.|+|||-.|- .|.+.. -+. ++.....+|+.|++ +.+-|||||.-|++|.+..
T Consensus 46 ~widaAHrnGV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~----------ia~~yGFDGw~iN~E~~~~~~~ 115 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIE----------IAKYYGFDGWLINIETPLSGPE 115 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHH----------HHHHHT--EEEEEEEESSTTGG
T ss_pred hhHHHHHhcCceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHH----------HHHHcCCCceEEEecccCCchh
Confidence 467788999999985542 222211 123 44556777888864 6788999999999999853
Q ss_pred --ccHHHHHHHHHHhh
Q 043511 159 --LHWDDLARFLSAYS 172 (300)
Q Consensus 159 --~~~~~l~~~Lr~~~ 172 (300)
+.+..|++.||+..
T Consensus 116 ~~~~l~~F~~~l~~~~ 131 (311)
T PF03644_consen 116 DAENLIDFLKYLRKEA 131 (311)
T ss_dssp GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 46667777777654
No 29
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=89.99 E-value=0.93 Score=42.86 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=18.4
Q ss_pred HHHHHHHhhCCceEE--EEEcCCC
Q 043511 88 SDAIKSCQSRGIKVM--LSLGGGV 109 (300)
Q Consensus 88 ~~~Ik~~q~~g~KVL--lSiGG~~ 109 (300)
.++|+.+|.+|+||+ ||+|-+.
T Consensus 84 ~~~i~~Lk~~g~~viaYlSvGe~E 107 (315)
T TIGR01370 84 PEEIVRAAAAGRWPIAYLSIGAAE 107 (315)
T ss_pred HHHHHHHHhCCcEEEEEEEchhcc
Confidence 467888899999999 7999853
No 30
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=88.85 E-value=5.3 Score=40.59 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=21.4
Q ss_pred CCChhhHHHHHHHHhhCCceEEEEE
Q 043511 81 AGGCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 81 ~~~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
-++..++++.|++||++|++|+|=+
T Consensus 156 ~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 156 YGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3567789999999999999999864
No 31
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=88.59 E-value=3.5 Score=35.84 Aligned_cols=92 Identities=22% Similarity=0.382 Sum_probs=58.4
Q ss_pred cccceeeeeccCCCc--ccHHHHHHHHHHhhcCCCceEEEeCCC-CCCCcchhhhhhhcCCCceEEeeecCCCCCCCCCC
Q 043511 144 AVLDGIDFDIEQGST--LHWDDLARFLSAYSSRGKKVYLTAAPQ-CPFPDRFLGAALNTGLFDYVWVQFYNNPPCQYSSG 220 (300)
Q Consensus 144 ~~~DGiDiD~E~p~~--~~~~~l~~~Lr~~~~~g~~~llTaAp~-~~~~d~~~~~~l~~~~~D~invq~Yd~~~~~~~~~ 220 (300)
..+-||.||++.++. ..|..|++.||+.....-..-||+=|. |..++ .+. .+ .+.+|-+-+|.|..- +.
T Consensus 41 ~~v~giQIDfDa~t~~L~~Y~~fL~~LR~~LP~~~~LSIT~L~dW~~~~~-~L~-~L-~~~VDE~VlQ~yqGl-~d---- 112 (181)
T PF11340_consen 41 NNVAGIQIDFDAATSRLPAYAQFLQQLRQRLPPDYRLSITALPDWLSSPD-WLN-AL-PGVVDELVLQVYQGL-FD---- 112 (181)
T ss_pred CCceEEEEecCccccchHHHHHHHHHHHHhCCCCceEeeEEehhhhcCch-hhh-hH-hhcCCeeEEEeecCC-CC----
Confidence 468999999999986 689999999999874333344555443 21122 122 22 367999999999422 21
Q ss_pred ChhhHHHHHHHHHc---cCCCCeEEEeeecCC
Q 043511 221 NTQNLISSFNRWAS---SLRNGKLFLGLPAAP 249 (300)
Q Consensus 221 ~~~~~~~~~~~w~~---g~p~~KlvlG~p~~~ 249 (300)
.. .+..|.. .+. --.-+|+|.+.
T Consensus 113 -~~----~~~~yl~~l~~l~-~PFriaLp~yG 138 (181)
T PF11340_consen 113 -PP----NYARYLPRLARLT-LPFRIALPQYG 138 (181)
T ss_pred -HH----HHHHHHHHHhcCC-CCeEEecCcCC
Confidence 11 2233432 344 56789999984
No 32
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=85.88 E-value=14 Score=35.01 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=42.7
Q ss_pred cccccceeeeec-cCCCc------------------ccHHHHHHHHHHhhcCCCceEEEeCCCCC---C-Ccchhh---h
Q 043511 142 GAAVLDGIDFDI-EQGST------------------LHWDDLARFLSAYSSRGKKVYLTAAPQCP---F-PDRFLG---A 195 (300)
Q Consensus 142 ~~~~~DGiDiD~-E~p~~------------------~~~~~l~~~Lr~~~~~g~~~llTaAp~~~---~-~d~~~~---~ 195 (300)
.+.|||.|.||+ .+|.. +-...|++..|+... ..+..||+.+-.. . .+..++ .
T Consensus 134 a~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~-~~~v~vSaDVfG~~~~~~~~~~iGQ~~~ 212 (316)
T PF13200_consen 134 AKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELH-PYGVPVSADVFGYVAWSPDDMGIGQDFE 212 (316)
T ss_pred HHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHh-HcCCCEEEEecccccccCCCCCcCCCHH
Confidence 467999999995 45641 123456666666442 2445688876532 1 122233 2
Q ss_pred hhhcCCCceEEeeecCCC
Q 043511 196 ALNTGLFDYVWVQFYNNP 213 (300)
Q Consensus 196 ~l~~~~~D~invq~Yd~~ 213 (300)
.+ ..++|+|..|.|-++
T Consensus 213 ~~-a~~vD~IsPMiYPSh 229 (316)
T PF13200_consen 213 KI-AEYVDYISPMIYPSH 229 (316)
T ss_pred HH-hhhCCEEEecccccc
Confidence 33 489999999999754
No 33
>PRK12568 glycogen branching enzyme; Provisional
Probab=83.44 E-value=17 Score=38.45 Aligned_cols=60 Identities=15% Similarity=0.251 Sum_probs=34.7
Q ss_pred ccccCCCccEEEEceee--ecCC-CCcceeecCCCCCCCCCChhhHHHHHHHHhhCCceEEEEE
Q 043511 45 STCATGKYAYVNIAFLN--KFGN-GQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 45 ~~~~~~~~thii~aF~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
+++..-++|||-+.=+. ++.. -++...++-. -++.-++..+++..|++||++|++|+|=+
T Consensus 277 ~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a-~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~ 339 (730)
T PRK12568 277 PYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYA-PTARHGSPDGFAQFVDACHRAGIGVILDW 339 (730)
T ss_pred HHHHHcCCCEEEECccccCCCCCCCCCCCCcCCc-cCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 44556789998764221 1111 0111111100 02333567789999999999999999864
No 34
>PRK05402 glycogen branching enzyme; Provisional
Probab=82.83 E-value=16 Score=38.44 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=34.7
Q ss_pred ccccCCCccEEEEceeeecCCCCcceeecCCCC--CCCCCChhhHHHHHHHHhhCCceEEEEE
Q 043511 45 STCATGKYAYVNIAFLNKFGNGQTPEINLAGHC--NPAAGGCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 45 ~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
+++..-++|||-+.=+..++....-..+..+.. +|.-++..+++..|++||++|++|+|=+
T Consensus 273 ~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 273 PYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 444566788887642211111100011111111 2334567889999999999999999864
No 35
>PRK12313 glycogen branching enzyme; Provisional
Probab=81.74 E-value=20 Score=37.11 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=21.9
Q ss_pred CCCChhhHHHHHHHHhhCCceEEEEE
Q 043511 80 AAGGCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 80 ~~~~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
.-++...+++.|++||++|+||+|=+
T Consensus 215 ~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 215 RYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 33567889999999999999999863
No 36
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=80.14 E-value=26 Score=36.24 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=20.7
Q ss_pred CChhhHHHHHHHHhhCCceEEEEE
Q 043511 82 GGCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 82 ~~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
++..++++.|++||++|+||+|=+
T Consensus 203 Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 203 GTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 456789999999999999999853
No 37
>PRK14706 glycogen branching enzyme; Provisional
Probab=78.07 E-value=19 Score=37.48 Aligned_cols=62 Identities=15% Similarity=0.071 Sum_probs=35.5
Q ss_pred ccccccCCCccEEEEceeeecCC-C--CcceeecCCCCCCCCCChhhHHHHHHHHhhCCceEEEEE
Q 043511 43 LTSTCATGKYAYVNIAFLNKFGN-G--QTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 43 l~~~~~~~~~thii~aF~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
|.+++..-++|||-+-=+..++. + ++...++-.. ++.-++..+++..|++||++|++|+|-+
T Consensus 173 l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~-~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 173 LGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAP-TSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHHcCCCEEEccchhcCCCCCCCCcCccccccc-ccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 33455567899987643322211 1 1111111000 1222456789999999999999999863
No 38
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.99 E-value=4.4 Score=39.79 Aligned_cols=153 Identities=17% Similarity=0.193 Sum_probs=87.1
Q ss_pred ChhhHHHHHHHHhhCCceEE--EEEcCCCCC--------------------cC---------ccC--hhhHHHHHHHHHH
Q 043511 83 GCRVVSDAIKSCQSRGIKVM--LSLGGGVGS--------------------YS---------LAS--VADAKNVADYLWN 129 (300)
Q Consensus 83 ~~~~~~~~Ik~~q~~g~KVL--lSiGG~~g~--------------------~~---------~~s--~~~~~~fa~~l~~ 129 (300)
+..-+...|++.|++|++|. ...|.-.-. +. +-+ --+.++|..+++
T Consensus 113 g~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv- 191 (418)
T COG1649 113 GYDPLAFVIAEAHKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLV- 191 (418)
T ss_pred CCChHHHHHHHHHhcCCeeeechhhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHH-
Confidence 45667788999999999997 333432100 00 001 124567777765
Q ss_pred hhcCCCCCcccccccccceeeeec----cCCCc-----------------------------ccHHHHHHHHHHh-hcCC
Q 043511 130 NFLGGTSSSRPLGAAVLDGIDFDI----EQGST-----------------------------LHWDDLARFLSAY-SSRG 175 (300)
Q Consensus 130 ~f~~g~s~~r~~~~~~~DGiDiD~----E~p~~-----------------------------~~~~~l~~~Lr~~-~~~g 175 (300)
.+.+++|.+|||.||- |.+.. ++.+.|+..|... ++..
T Consensus 192 --------~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavK 263 (418)
T COG1649 192 --------VEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVK 263 (418)
T ss_pred --------HHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhC
Confidence 4788999999999982 22210 1334566666553 3334
Q ss_pred CceEEEeCCCC-CCCc-chhh-------hhhhcCCCceEEeeecCCCCCCCCCCChhhHHHHHHHHHcc-CC-CCeEEEe
Q 043511 176 KKVYLTAAPQC-PFPD-RFLG-------AALNTGLFDYVWVQFYNNPPCQYSSGNTQNLISSFNRWASS-LR-NGKLFLG 244 (300)
Q Consensus 176 ~~~llTaAp~~-~~~d-~~~~-------~~l~~~~~D~invq~Yd~~~~~~~~~~~~~~~~~~~~w~~g-~p-~~KlvlG 244 (300)
+...+|++|.. ...+ ..++ .-+..+++|++-+|.|=... .. ..........|+.. +| ...|..|
T Consensus 264 p~v~~svsp~n~~~~~~f~y~~~~qDw~~Wv~~G~iD~l~pqvYr~~~-~~----~~~~~~~~~~wa~~~~~~~i~i~~G 338 (418)
T COG1649 264 PNVKFSVSPFNPLGSATFAYDYFLQDWRRWVRQGLIDELAPQVYRTLS-TF----VAEYDTLAKWWANTVIPTRIGIYIG 338 (418)
T ss_pred CCeEEEEccCCCCCccceehhhhhhhHHHHHHcccHhhhhhhhhcccc-cc----hhhhhhHHHHhhhhhcccceeeecc
Confidence 67889999931 1110 1122 12236899999999996521 10 01111222356542 33 5688888
Q ss_pred eecCC
Q 043511 245 LPAAP 249 (300)
Q Consensus 245 ~p~~~ 249 (300)
+..+.
T Consensus 339 ~~~~~ 343 (418)
T COG1649 339 LAAYK 343 (418)
T ss_pred hhhcc
Confidence 88875
No 39
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=75.68 E-value=15 Score=37.90 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=18.6
Q ss_pred hhHHHHHHHHhhCCceEEEEE
Q 043511 85 RVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 85 ~~~~~~Ik~~q~~g~KVLlSi 105 (300)
.++++.|++||++|++|+|=+
T Consensus 229 ~efk~lV~~~H~~Gi~VilDv 249 (605)
T TIGR02104 229 RELKQMIQALHENGIRVIMDV 249 (605)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 578999999999999999753
No 40
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=73.90 E-value=8.2 Score=31.73 Aligned_cols=22 Identities=23% Similarity=0.733 Sum_probs=18.2
Q ss_pred hhHHHHHHHHhhCCceEE--EEEc
Q 043511 85 RVVSDAIKSCQSRGIKVM--LSLG 106 (300)
Q Consensus 85 ~~~~~~Ik~~q~~g~KVL--lSiG 106 (300)
.-+.+.|++||..|++|+ ++++
T Consensus 44 Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 44 DLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHHCCCEEEEEEeee
Confidence 466899999999999998 4555
No 41
>PRK03705 glycogen debranching enzyme; Provisional
Probab=73.34 E-value=7.2 Score=40.67 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=18.4
Q ss_pred hhHHHHHHHHhhCCceEEEEE
Q 043511 85 RVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 85 ~~~~~~Ik~~q~~g~KVLlSi 105 (300)
.++++.|++||++|+||+|=+
T Consensus 242 ~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 242 DEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 578999999999999999753
No 42
>PLN02960 alpha-amylase
Probab=73.21 E-value=17 Score=39.00 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.2
Q ss_pred CChhhHHHHHHHHhhCCceEEEEE
Q 043511 82 GGCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 82 ~~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
++...+...|++||.+|++|+|-+
T Consensus 463 Gtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 463 GTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 456789999999999999999976
No 43
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=72.98 E-value=18 Score=33.52 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=33.4
Q ss_pred hhHHHHHHHHh-hCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccc-cceeeeeccCC
Q 043511 85 RVVSDAIKSCQ-SRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAV-LDGIDFDIEQG 156 (300)
Q Consensus 85 ~~~~~~Ik~~q-~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~-~DGiDiD~E~p 156 (300)
....+.++..+ +.++.|++||+|. +.+.|++... -+.++| +|||+|+.--|
T Consensus 77 ~~~~~~~~~~~~~~~~p~i~si~g~----------~~~~~~~~a~-----------~~~~aG~~D~iElN~~cP 129 (301)
T PRK07259 77 DAFIEEELPWLEEFDTPIIANVAGS----------TEEEYAEVAE-----------KLSKAPNVDAIELNISCP 129 (301)
T ss_pred HHHHHHHHHHHhccCCcEEEEeccC----------CHHHHHHHHH-----------HHhccCCcCEEEEECCCC
Confidence 34445555543 3478899999884 2456665442 357888 99999987443
No 44
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=71.15 E-value=10 Score=39.68 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=19.7
Q ss_pred ChhhHHHHHHHHhhCCceEEEEE
Q 043511 83 GCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 83 ~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
...++++.|++||++|++|+|=+
T Consensus 243 ~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 243 QVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEE
Confidence 35689999999999999999753
No 45
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=69.53 E-value=18 Score=33.32 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=35.4
Q ss_pred hhHHHHHHHHhh-CCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCC
Q 043511 85 RVVSDAIKSCQS-RGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGS 157 (300)
Q Consensus 85 ~~~~~~Ik~~q~-~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~ 157 (300)
....+.++.+++ .++++++||+|.. .+.|++.+. .+.++|+|+|+|++-.|.
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~g~~----------~~~~~~~a~-----------~~~~~G~d~iElN~~cP~ 127 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIAGST----------VEEFVEVAE-----------KLADAGADAIELNISCPN 127 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEecCC----------HHHHHHHHH-----------HHHHcCCCEEEEECCCCC
Confidence 344566666544 5789999999842 345555432 356789999999987664
No 46
>PRK14705 glycogen branching enzyme; Provisional
Probab=68.46 E-value=15 Score=41.07 Aligned_cols=62 Identities=13% Similarity=0.052 Sum_probs=34.7
Q ss_pred cccccCCCccEEEEceeeecCCCCcceeecCCCC--CCCCCChhhHHHHHHHHhhCCceEEEEE
Q 043511 44 TSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHC--NPAAGGCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 44 ~~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
.+++..-+||||-+-=+..++.++.-..+..+.. ++.-++..+++..|++||++|++|+|=+
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3455567899987542211111110011111111 1222456789999999999999999863
No 47
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=67.86 E-value=39 Score=31.94 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHhhCCceEEEEE
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
.+.+.+....+|..|-|+++=|
T Consensus 76 ~~~~~~l~~~vh~~G~~~~~QL 97 (336)
T cd02932 76 IEALKRIVDFIHSQGAKIGIQL 97 (336)
T ss_pred HHHHHHHHHHHHhcCCcEEEEc
Confidence 4566677778888999988766
No 48
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=67.41 E-value=28 Score=37.68 Aligned_cols=32 Identities=16% Similarity=0.098 Sum_probs=22.6
Q ss_pred cccccccceeeeeccCC-CcccHHHHHHHHHHh
Q 043511 140 PLGAAVLDGIDFDIEQG-STLHWDDLARFLSAY 171 (300)
Q Consensus 140 ~~~~~~~DGiDiD~E~p-~~~~~~~l~~~Lr~~ 171 (300)
.+++|++||+-||.-.- ..+.+..+.++||+.
T Consensus 484 W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i 516 (898)
T TIGR02103 484 WAKDYKVDGFRFDLMGHHPKAQMLAAREAIKAL 516 (898)
T ss_pred HHHHcCCCEEEEechhhCCHHHHHHHHHHHHHh
Confidence 56789999999996543 334566666666665
No 49
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=66.37 E-value=25 Score=37.26 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.5
Q ss_pred CChhhHHHHHHHHhhCCceEEEEE
Q 043511 82 GGCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 82 ~~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
++..+++..|++||++|++|+|=+
T Consensus 297 Gtp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 297 GTPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 456789999999999999999864
No 50
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=66.20 E-value=26 Score=32.09 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHhh--CCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCC
Q 043511 84 CRVVSDAIKSCQS--RGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGS 157 (300)
Q Consensus 84 ~~~~~~~Ik~~q~--~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~ 157 (300)
...+.+.|+..++ .++.+++||+|. +. +.+++.+ +.+.++|+|+|+|++-.|.
T Consensus 82 ~~~~~~~i~~~~~~~~~~pvi~si~g~-------~~---~~~~~~a-----------~~~~~~G~d~ielN~~cP~ 136 (289)
T cd02810 82 LDVWLQDIAKAKKEFPGQPLIASVGGS-------SK---EDYVELA-----------RKIERAGAKALELNLSCPN 136 (289)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeccC-------CH---HHHHHHH-----------HHHHHhCCCEEEEEcCCCC
Confidence 4455666766555 478999999996 12 2333322 2345679999999998774
No 51
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=65.91 E-value=36 Score=37.77 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHhhCCceEEEE
Q 043511 84 CRVVSDAIKSCQSRGIKVMLS 104 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlS 104 (300)
..++++.|++||++|++|+|=
T Consensus 554 i~EfK~LV~alH~~GI~VILD 574 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILD 574 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEe
Confidence 357899999999999999985
No 52
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=65.25 E-value=20 Score=33.73 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHhhCCceEEEEE------c----------C--------------CCC---CcCccChhhHHHHHHHHHHh
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSL------G----------G--------------GVG---SYSLASVADAKNVADYLWNN 130 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSi------G----------G--------------~~g---~~~~~s~~~~~~fa~~l~~~ 130 (300)
++...+.|+.+|++|+||++.+ + | |.+ -..|.+++.++-+.+.+.
T Consensus 65 FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~-- 142 (319)
T cd06591 65 FPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLK-- 142 (319)
T ss_pred CCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHH--
Confidence 5566788999999999999876 1 1 111 123445555555555543
Q ss_pred hcCCCCCcccccccccceeeeeccCC
Q 043511 131 FLGGTSSSRPLGAAVLDGIDFDIEQG 156 (300)
Q Consensus 131 f~~g~s~~r~~~~~~~DGiDiD~E~p 156 (300)
+.+.+.|+||+=+|.-.|
T Consensus 143 --------~~~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 143 --------KNYYDKGVDAWWLDAAEP 160 (319)
T ss_pred --------HHhhcCCCcEEEecCCCC
Confidence 345678999998887654
No 53
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=58.43 E-value=26 Score=31.41 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=45.3
Q ss_pred CceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCccccc-------ccccc-eeeeeccCCCcccHHHHHHHHH
Q 043511 98 GIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLG-------AAVLD-GIDFDIEQGSTLHWDDLARFLS 169 (300)
Q Consensus 98 g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~-------~~~~D-GiDiD~E~p~~~~~~~l~~~Lr 169 (300)
.+.++++|+|.+|+.. .+|++.+.+.|....-..=..+ +.-++ -..+||++|..-++..|.+.|.
T Consensus 6 ~~~iiIgIaG~SgSGK-------TTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~ 78 (218)
T COG0572 6 EKVIIIGIAGGSGSGK-------TTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLK 78 (218)
T ss_pred CceEEEEEeCCCCCCH-------HHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHH
Confidence 3458999999987632 6788888887753211100011 12232 4457788888888999999999
Q ss_pred Hhhc
Q 043511 170 AYSS 173 (300)
Q Consensus 170 ~~~~ 173 (300)
.+++
T Consensus 79 ~L~~ 82 (218)
T COG0572 79 DLKQ 82 (218)
T ss_pred HHHc
Confidence 9874
No 54
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=58.31 E-value=9.8 Score=27.94 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=17.6
Q ss_pred HHHHHHHhhCCceEE--EEEcCCC
Q 043511 88 SDAIKSCQSRGIKVM--LSLGGGV 109 (300)
Q Consensus 88 ~~~Ik~~q~~g~KVL--lSiGG~~ 109 (300)
.+.|+.+|.+|+||+ +|+|-+.
T Consensus 39 ~~~I~~L~~~G~~vicY~s~Gs~E 62 (74)
T PF03537_consen 39 KEEIARLKAQGKKVICYFSIGSAE 62 (74)
T ss_dssp HHHHHHHHHTT-EEEEEEESSEEE
T ss_pred HHHHHHHHHCCCEEEEEEeCceec
Confidence 578999999999999 8888763
No 55
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=55.30 E-value=91 Score=30.02 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHhhCCceEEEEE
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
.+.+.+.+..+|+.|-|+++=|
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL 103 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIEL 103 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEec
Confidence 4566677778889999988766
No 56
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=55.14 E-value=45 Score=31.07 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHhhCCceEEEEE
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
.+.+.+.+..+|+.|-|+++=|
T Consensus 76 ~~~~~~~~~~vh~~g~~~~~Ql 97 (327)
T cd02803 76 IPGLRKLTEAVHAHGAKIFAQL 97 (327)
T ss_pred HHHHHHHHHHHHhCCCHhhHHh
Confidence 4555666777788888877544
No 57
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=54.08 E-value=88 Score=30.24 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHhhCCceEEEEE
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
.+.+++.++.+|+.|-|+++=|
T Consensus 82 i~~~k~l~davh~~G~~i~~QL 103 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQL 103 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEc
Confidence 4566777888899999999887
No 58
>PLN03244 alpha-amylase; Provisional
Probab=53.70 E-value=71 Score=34.25 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=20.6
Q ss_pred CChhhHHHHHHHHhhCCceEEEEE
Q 043511 82 GGCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 82 ~~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
++..+++..|.+||+.|++|+|=+
T Consensus 438 GTPeDLK~LVD~aH~~GI~VILDv 461 (872)
T PLN03244 438 GTPDDFKRLVDEAHGLGLLVFLDI 461 (872)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 456788999999999999999864
No 59
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=52.40 E-value=41 Score=31.94 Aligned_cols=64 Identities=13% Similarity=0.085 Sum_probs=42.0
Q ss_pred hhhH--HHHHHHHhhCCceEEEEE------c---------------C---------------CCCC---cCccChhhHHH
Q 043511 84 CRVV--SDAIKSCQSRGIKVMLSL------G---------------G---------------GVGS---YSLASVADAKN 122 (300)
Q Consensus 84 ~~~~--~~~Ik~~q~~g~KVLlSi------G---------------G---------------~~g~---~~~~s~~~~~~ 122 (300)
.+.. .+.|+++|++|+||++.+ . | |.|. ..|++++.++-
T Consensus 63 FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w 142 (339)
T cd06602 63 FPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEW 142 (339)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHH
Confidence 4444 778888889999999887 1 1 0111 13445555555
Q ss_pred HHHHHHHhhcCCCCCcccccccccceeeeeccCCC
Q 043511 123 VADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGS 157 (300)
Q Consensus 123 fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~ 157 (300)
+.+.+- +++.+.|+||+=+|.-.|.
T Consensus 143 w~~~~~----------~~~~~~Gvdg~w~D~~Ep~ 167 (339)
T cd06602 143 WTDEIK----------DFHDQVPFDGLWIDMNEPS 167 (339)
T ss_pred HHHHHH----------HHHhcCCCcEEEecCCCCc
Confidence 555443 3567789999999987764
No 60
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=51.07 E-value=27 Score=30.67 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=29.2
Q ss_pred hhCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCC
Q 043511 95 QSRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQG 156 (300)
Q Consensus 95 q~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p 156 (300)
...+.+++++|+|. +++.|++..- .+.+.|||||+|+.=.|
T Consensus 51 ~~~~~p~~~qi~g~----------~~~~~~~aa~-----------~~~~aG~d~ieln~g~p 91 (231)
T cd02801 51 NPEERPLIVQLGGS----------DPETLAEAAK-----------IVEELGADGIDLNMGCP 91 (231)
T ss_pred CccCCCEEEEEcCC----------CHHHHHHHHH-----------HHHhcCCCEEEEeCCCC
Confidence 45689999999985 2345555432 34568999999986554
No 61
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=50.72 E-value=1.2e+02 Score=28.92 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=15.7
Q ss_pred hhHHHHHHHHhhCCceEEEEE
Q 043511 85 RVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 85 ~~~~~~Ik~~q~~g~KVLlSi 105 (300)
+.+.+.+..+|+.|-|+++=|
T Consensus 77 ~~~~~l~~~vh~~g~~~~~Ql 97 (343)
T cd04734 77 PGFRRLAEAVHAHGAVIMIQL 97 (343)
T ss_pred HHHHHHHHHHHhcCCeEEEec
Confidence 455666777788899988666
No 62
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=49.43 E-value=1.4e+02 Score=28.50 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHhhCCceEEEEE
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
.+.+.+.+..+|..|-|+++=|
T Consensus 76 i~~~~~l~~~vh~~g~~~~~QL 97 (353)
T cd02930 76 AAGHRLITDAVHAEGGKIALQI 97 (353)
T ss_pred HHHHHHHHHHHHHcCCEEEeec
Confidence 4566677778888999988776
No 63
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=48.48 E-value=21 Score=32.13 Aligned_cols=27 Identities=30% Similarity=0.565 Sum_probs=23.0
Q ss_pred CCCCChhhHHHHHHHHhhCCceEEEEE
Q 043511 79 PAAGGCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 79 ~~~~~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
|.-++..++.+.|++||++|+||++-+
T Consensus 46 ~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 46 PRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp TTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cccchhhhhhhhhhccccccceEEEee
Confidence 445667899999999999999999865
No 64
>PLN02877 alpha-amylase/limit dextrinase
Probab=48.13 E-value=1.1e+02 Score=33.58 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=18.2
Q ss_pred hhHHHHHHHHhhCCceEEEEE
Q 043511 85 RVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 85 ~~~~~~Ik~~q~~g~KVLlSi 105 (300)
.++++.|+.||..|++|++=+
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 468899999999999999864
No 65
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=47.94 E-value=2.2e+02 Score=25.90 Aligned_cols=124 Identities=22% Similarity=0.208 Sum_probs=67.8
Q ss_pred cccceeeeeccCCC----cccHHHHHHHHHHhhcCCCceEEEeCCCC-CC-Ccchhhhhhh--cCCCceEEeeecCCCCC
Q 043511 144 AVLDGIDFDIEQGS----TLHWDDLARFLSAYSSRGKKVYLTAAPQC-PF-PDRFLGAALN--TGLFDYVWVQFYNNPPC 215 (300)
Q Consensus 144 ~~~DGiDiD~E~p~----~~~~~~l~~~Lr~~~~~g~~~llTaAp~~-~~-~d~~~~~~l~--~~~~D~invq~Yd~~~~ 215 (300)
.|.|=||+ -.|. ..++...++++++... ....+||+..- |+ |+.....++. ..-+|||-|=+|...
T Consensus 19 ~gaDiID~--K~P~~GaLGA~~~~vi~~i~~~~~--~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~-- 92 (235)
T PF04476_consen 19 GGADIIDL--KNPAEGALGALFPWVIREIVAAVP--GRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVGLFGCK-- 92 (235)
T ss_pred CCCCEEEc--cCCCCCCCCCCCHHHHHHHHHHcC--CCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEecCCCC--
Confidence 46666665 5554 2567788888888752 33568888753 22 2211111221 356999999998532
Q ss_pred CCCCCChhhHHHHHHHHH---ccCCCCeEEEeeecCCCCCCCCCcChHHHHHHHhHhhhcCCCCceEEEeec
Q 043511 216 QYSSGNTQNLISSFNRWA---SSLRNGKLFLGLPAAPAAAGSGYIPPNVLTSQVLPQIKTSPKYGGVMLWSK 284 (300)
Q Consensus 216 ~~~~~~~~~~~~~~~~w~---~g~p~~KlvlG~p~~~~~a~~Gyv~~~~l~~~~~~~~~~~~~~gGvm~W~~ 284 (300)
+.+...+.+..+. +...+++.++-+-+.. ...-|-++|-++... -...+|-|+|+=.+
T Consensus 93 -----~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD-~~r~~~~~p~~l~~~-----a~~aG~~gvMlDTa 153 (235)
T PF04476_consen 93 -----DYDEAIEALEAVVRAVKDFDPDKKVVAVGYAD-AQRVGSISPLDLPEI-----AAEAGFDGVMLDTA 153 (235)
T ss_pred -----CHHHHHHHHHHHHHHHhhhCCCcEEEEEEecc-hhhhcCCCHHHHHHH-----HHHcCCCEEEEecc
Confidence 1222333344433 2345566666665542 212245677666432 23357999996433
No 66
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=47.73 E-value=76 Score=26.05 Aligned_cols=100 Identities=13% Similarity=0.132 Sum_probs=56.5
Q ss_pred EEEeCCCCCCccccccccCCCccEEEEceeeecCCCCcceeecCCCCCCCCCChhhHHHHHHHHhhCCc-eEEEEEcCCC
Q 043511 31 AIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGI-KVMLSLGGGV 109 (300)
Q Consensus 31 v~Ywg~~~~~~~l~~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~-KVLlSiGG~~ 109 (300)
+.|.|..-....+.+.+.....++|.+|+.... ....+.+.++.++..+. ++.+-+||.-
T Consensus 34 Vi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~-------------------~~~~~~~~~~~L~~~~~~~~~i~vGG~~ 94 (137)
T PRK02261 34 VINLGVMTSQEEFIDAAIETDADAILVSSLYGH-------------------GEIDCRGLREKCIEAGLGDILLYVGGNL 94 (137)
T ss_pred EEECCCCCCHHHHHHHHHHcCCCEEEEcCcccc-------------------CHHHHHHHHHHHHhcCCCCCeEEEECCC
Confidence 578876643344666666778999999886531 12344555666665543 4677788863
Q ss_pred CCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCcccHHHHHHHHHHhh
Q 043511 110 GSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYS 172 (300)
Q Consensus 110 g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~~~~~~l~~~Lr~~~ 172 (300)
-. .+.+.+.-.. -++++|||-+ ++..+.....+..||+..
T Consensus 95 ~~----~~~~~~~~~~--------------~l~~~G~~~v-----f~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 95 VV----GKHDFEEVEK--------------KFKEMGFDRV-----FPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred CC----CccChHHHHH--------------HHHHcCCCEE-----ECcCCCHHHHHHHHHHHh
Confidence 21 0111111111 1355666543 344456788888888764
No 67
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=47.27 E-value=2.2e+02 Score=25.70 Aligned_cols=98 Identities=15% Similarity=0.100 Sum_probs=55.9
Q ss_pred hhHHHHHHHHhhCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc------
Q 043511 85 RVVSDAIKSCQSRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST------ 158 (300)
Q Consensus 85 ~~~~~~Ik~~q~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~------ 158 (300)
..+.++|+.++ .+.+|.+++||.+ .++....++.+ .+ ++|+|||+.-.|..
T Consensus 55 ~~i~~e~~~~~-~~~~vivnv~~~~-------~ee~~~~a~~v--------------~~-~~d~IdiN~gCP~~~v~~~g 111 (231)
T TIGR00736 55 SYIIEQIKKAE-SRALVSVNVRFVD-------LEEAYDVLLTI--------------AE-HADIIEINAHCRQPEITEIG 111 (231)
T ss_pred HHHHHHHHHHh-hcCCEEEEEecCC-------HHHHHHHHHHH--------------hc-CCCEEEEECCCCcHHHcCCC
Confidence 45667888875 4569999999952 23333444432 23 69999999998862
Q ss_pred ------ccHHHHHHHHHHhhcCCCceEEEeCCCCCCCc-ch--hhhhhhcCCCceEEe
Q 043511 159 ------LHWDDLARFLSAYSSRGKKVYLTAAPQCPFPD-RF--LGAALNTGLFDYVWV 207 (300)
Q Consensus 159 ------~~~~~l~~~Lr~~~~~g~~~llTaAp~~~~~d-~~--~~~~l~~~~~D~inv 207 (300)
.+...+.+.++..+..+....+=+-|. .++ .. +-..+...-.|+|.|
T Consensus 112 ~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~--~~~~~~~~~a~~l~~aGad~i~V 167 (231)
T TIGR00736 112 IGQELLKNKELLKEFLTKMKELNKPIFVKIRGN--CIPLDELIDALNLVDDGFDGIHV 167 (231)
T ss_pred CchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCC--CCcchHHHHHHHHHHcCCCEEEE
Confidence 345555555555543233333333332 221 11 112333567899988
No 68
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=47.07 E-value=31 Score=31.96 Aligned_cols=71 Identities=10% Similarity=0.079 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHhhCCceEEEEE---cCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCccc
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSL---GGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLH 160 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSi---GG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~~~ 160 (300)
...+.+.|+..+++|++|+|=. +|++.. .+... ..+.|. .+.+.|+.||-+|+-...++.
T Consensus 72 ~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~-~~~~~-~~~~f~---------------~~~~~Gv~GvKidF~~~d~Q~ 134 (273)
T PF10566_consen 72 DFDLPELVDYAKEKGVGIWLWYHSETGGNVA-NLEKQ-LDEAFK---------------LYAKWGVKGVKIDFMDRDDQE 134 (273)
T ss_dssp T--HHHHHHHHHHTT-EEEEEEECCHTTBHH-HHHCC-HHHHHH---------------HHHHCTEEEEEEE--SSTSHH
T ss_pred ccCHHHHHHHHHHcCCCEEEEEeCCcchhhH-hHHHH-HHHHHH---------------HHHHcCCCEEeeCcCCCCCHH
Confidence 4577889999999999999743 232211 12112 133333 357899999999998877765
Q ss_pred HHHHHHHHHHh
Q 043511 161 WDDLARFLSAY 171 (300)
Q Consensus 161 ~~~l~~~Lr~~ 171 (300)
..++-+.+-+.
T Consensus 135 ~v~~y~~i~~~ 145 (273)
T PF10566_consen 135 MVNWYEDILED 145 (273)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 69
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=45.78 E-value=34 Score=33.77 Aligned_cols=69 Identities=17% Similarity=0.120 Sum_probs=47.1
Q ss_pred HhhCCceEEEEE-cCCC-CC----cCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc----ccHHH
Q 043511 94 CQSRGIKVMLSL-GGGV-GS----YSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST----LHWDD 163 (300)
Q Consensus 94 ~q~~g~KVLlSi-GG~~-g~----~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~----~~~~~ 163 (300)
+|..|+|||-.+ --|. |. .-+.++++.+..|+.+.. +.+-.||||-=|++|..-+ .+...
T Consensus 120 AHrHGV~vlGTFItEw~eg~~~c~~~La~~es~~~~~e~L~~----------l~~~fgFdGWLiNiEn~i~~~~i~~l~~ 189 (526)
T KOG2331|consen 120 AHRHGVKVLGTFITEWDEGKATCKEFLATEESVEMTVERLVE----------LARFFGFDGWLINIENKIDLAKIPNLIQ 189 (526)
T ss_pred hhhcCceeeeeEEEEeccchhHHHHHHccchhHHHHHHHHHH----------HHHHhCCceEEEEeeeccChhhCccHHH
Confidence 377899999654 3454 21 235666777777777753 5567899999999998643 46666
Q ss_pred HHHHHHHhh
Q 043511 164 LARFLSAYS 172 (300)
Q Consensus 164 l~~~Lr~~~ 172 (300)
|+..|.+..
T Consensus 190 F~~~Lt~~~ 198 (526)
T KOG2331|consen 190 FVSHLTKVL 198 (526)
T ss_pred HHHHHHHHH
Confidence 776666643
No 70
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=45.40 E-value=1.5e+02 Score=27.96 Aligned_cols=22 Identities=9% Similarity=0.155 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHhhCCceEEEEE
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
.+.+.+....+|..|-|+++=|
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql 102 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQL 102 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc
Confidence 4566677778899999988755
No 71
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=45.08 E-value=17 Score=35.79 Aligned_cols=29 Identities=21% Similarity=0.528 Sum_probs=19.4
Q ss_pred hHHHHHHHhHhhhcCCCCceEEEeeccccCC
Q 043511 259 PNVLTSQVLPQIKTSPKYGGVMLWSKFFDDQ 289 (300)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~gGvm~W~~~~d~~ 289 (300)
+..+.... ++++ ..++||+|+|++..|.+
T Consensus 397 ~rSvkaK~-eYv~-~n~LGG~m~We~sgD~n 425 (441)
T COG3325 397 PRSVKAKA-EYVA-DNNLGGMMFWEISGDEN 425 (441)
T ss_pred CcchhhHH-HHHh-hcCccceEEEEecCCcc
Confidence 34444332 4444 46899999999999943
No 72
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=44.45 E-value=2.5e+02 Score=25.68 Aligned_cols=111 Identities=13% Similarity=0.174 Sum_probs=65.2
Q ss_pred hhhHHHHHHHHhhCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCC-CcccHH
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQG-STLHWD 162 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p-~~~~~~ 162 (300)
...+.+.|+.+-..|++-++- .|.+|....-|.++|.++.+.+.... +| ++..=-. +..+..
T Consensus 21 ~~~l~~~i~~l~~~Gv~gi~~-~Gs~GE~~~ls~~Er~~~~~~~~~~~---------------~~-~~~vi~gv~~~~~~ 83 (292)
T PRK03170 21 FAALRKLVDYLIANGTDGLVV-VGTTGESPTLTHEEHEELIRAVVEAV---------------NG-RVPVIAGTGSNSTA 83 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEE-CCcCCccccCCHHHHHHHHHHHHHHh---------------CC-CCcEEeecCCchHH
Confidence 467788899888899987774 45556555556788999988776421 11 1100011 123556
Q ss_pred HHHHHHHHhhcCCCceEEEeCCCCCCCc-c----hhhhhhhcCCCceEEeeecCCCC
Q 043511 163 DLARFLSAYSSRGKKVYLTAAPQCPFPD-R----FLGAALNTGLFDYVWVQFYNNPP 214 (300)
Q Consensus 163 ~l~~~Lr~~~~~g~~~llTaAp~~~~~d-~----~~~~~l~~~~~D~invq~Yd~~~ 214 (300)
..++..|...+.|-+.++.+.|.-..+. . ++.. + .+..| +-++.||.+.
T Consensus 84 ~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~-i-a~~~~-~pv~lYn~P~ 137 (292)
T PRK03170 84 EAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKA-I-AEATD-LPIILYNVPG 137 (292)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHH-H-HhcCC-CCEEEEECcc
Confidence 6666666665557666777766532121 1 1222 2 23456 6788999774
No 73
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=42.96 E-value=1.4e+02 Score=28.31 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=49.2
Q ss_pred hHHHHHHHHhhCCceEEEEEcCCCCC---cCccCh----------hhHHHHHH-HHHHhhcCCCCCcccccccccceeee
Q 043511 86 VVSDAIKSCQSRGIKVMLSLGGGVGS---YSLASV----------ADAKNVAD-YLWNNFLGGTSSSRPLGAAVLDGIDF 151 (300)
Q Consensus 86 ~~~~~Ik~~q~~g~KVLlSiGG~~g~---~~~~s~----------~~~~~fa~-~l~~~f~~g~s~~r~~~~~~~DGiDi 151 (300)
-+.+..++||+.|+|+-+-+..+... +..... ....++.+ .+.+ ...+++.+|.+|.+=|
T Consensus 139 iv~El~~A~rk~Glk~G~Y~S~~dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ql~EL~~~Y~~d~lWf 212 (346)
T PF01120_consen 139 IVGELADACRKYGLKFGLYYSPWDWHHPDYPPDEEGDENGPADGPGNWQRYYNEYWLA------QLRELLTRYKPDILWF 212 (346)
T ss_dssp HHHHHHHHHHHTT-EEEEEEESSSCCCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHH------HHHHHHHCSTESEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEecchHhcCcccCCCccCCcccccccchhhHhHhhhhhHH------HHHHHHhCCCcceEEe
Confidence 45678899999999999887776422 111111 11223333 2222 1246788999999999
Q ss_pred eccCCCc---ccHHHHHHHHHHhh
Q 043511 152 DIEQGST---LHWDDLARFLSAYS 172 (300)
Q Consensus 152 D~E~p~~---~~~~~l~~~Lr~~~ 172 (300)
|.-.+.. ..+..+.+.+|++.
T Consensus 213 Dg~~~~~~~~~~~~~~~~~i~~~q 236 (346)
T PF01120_consen 213 DGGWPDPDEDWDSAELYNWIRKLQ 236 (346)
T ss_dssp ESTTSCCCTHHHHHHHHHHHHHHS
T ss_pred cCCCCccccccCHHHHHHHHHHhC
Confidence 9776632 24567777777764
No 74
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=41.91 E-value=71 Score=26.29 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=31.0
Q ss_pred HHHHHHHccCCCCeEEEeeecCCCCCCCCCcChH-HHHHHHhHhhhcCCCCceEEEeecc
Q 043511 227 SSFNRWASSLRNGKLFLGLPAAPAAAGSGYIPPN-VLTSQVLPQIKTSPKYGGVMLWSKF 285 (300)
Q Consensus 227 ~~~~~w~~g~p~~KlvlG~p~~~~~a~~Gyv~~~-~l~~~~~~~~~~~~~~gGvm~W~~~ 285 (300)
..+..+.+..+.++||+|+|.+. .|..++. ...+...+.++..-++ =|-+||=.
T Consensus 44 ~~l~~~i~~~~i~~iVvGlP~~~----~G~~~~~~~~v~~f~~~L~~~~~~-~v~~~DEr 98 (138)
T PRK00109 44 DRLEKLIKEWQPDGLVVGLPLNM----DGTEGPRTERARKFANRLEGRFGL-PVVLVDER 98 (138)
T ss_pred HHHHHHHHHhCCCEEEEeccCCC----CCCcCHHHHHHHHHHHHHHHHhCC-CEEEEcCC
Confidence 33445555557899999999975 3566652 2333455555533222 25556533
No 75
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=41.79 E-value=79 Score=25.72 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=30.7
Q ss_pred HHHHHHHccCCCCeEEEeeecCCCCCCCCCcChH-HHHHHHhHhhhcCCCCceEEEee
Q 043511 227 SSFNRWASSLRNGKLFLGLPAAPAAAGSGYIPPN-VLTSQVLPQIKTSPKYGGVMLWS 283 (300)
Q Consensus 227 ~~~~~w~~g~p~~KlvlG~p~~~~~a~~Gyv~~~-~l~~~~~~~~~~~~~~gGvm~W~ 283 (300)
..+..+.+..++++||+|+|.+. .|-.++. ...+.+.+.+++.-+. -|-+||
T Consensus 38 ~~l~~~i~~~~~~~iVvGlP~~~----dG~~~~~a~~v~~f~~~L~~~~~~-~v~~~D 90 (130)
T TIGR00250 38 SRIEELLKEWTPDKIVVGLPLNM----DGTEGPLTERAQKFANRLEGRFGV-PVVLWD 90 (130)
T ss_pred HHHHHHHHHcCCCEEEEeccCCC----CcCcCHHHHHHHHHHHHHHHHhCC-CEEEEc
Confidence 44556666668899999999975 3555653 2333444555432221 255565
No 76
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=41.31 E-value=32 Score=32.95 Aligned_cols=27 Identities=26% Similarity=0.628 Sum_probs=24.4
Q ss_pred ChhhHHHHHHHHhhCCceEEEEEcCCC
Q 043511 83 GCRVVSDAIKSCQSRGIKVMLSLGGGV 109 (300)
Q Consensus 83 ~~~~~~~~Ik~~q~~g~KVLlSiGG~~ 109 (300)
....+.+.|+-||+.++-.||++||.+
T Consensus 70 ~~~Tv~kaV~i~kee~idflLAVGGGS 96 (384)
T COG1979 70 RLETLMKAVEICKEENIDFLLAVGGGS 96 (384)
T ss_pred hHHHHHHHHHHHHHcCceEEEEecCcc
Confidence 467888999999999999999999985
No 77
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=41.01 E-value=96 Score=29.25 Aligned_cols=52 Identities=23% Similarity=0.243 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHhh-CCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCC
Q 043511 84 CRVVSDAIKSCQS-RGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQG 156 (300)
Q Consensus 84 ~~~~~~~Ik~~q~-~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p 156 (300)
...+.+.|+.+++ .++.|++||.|.+ .+.|++.+. .+.+.++|+|+|+.-.+
T Consensus 84 ~~~~~~~i~~~~~~~~~pvi~si~g~~----------~~~~~~~a~-----------~~~~~gad~iElN~s~~ 136 (325)
T cd04739 84 PEEYLELIRRAKRAVSIPVIASLNGVS----------AGGWVDYAR-----------QIEEAGADALELNIYAL 136 (325)
T ss_pred HHHHHHHHHHHHhccCCeEEEEeCCCC----------HHHHHHHHH-----------HHHhcCCCEEEEeCCCC
Confidence 4455566666543 3788999997631 233443331 24667899999999753
No 78
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=40.28 E-value=3.4e+02 Score=25.93 Aligned_cols=229 Identities=22% Similarity=0.278 Sum_probs=96.0
Q ss_pred EeCCCCCCccccccccCCCccEEEEceeeecCCCCcceeecCCCCCCCCCChhhHHHHHHHHhhCCceEEEEEcCC---C
Q 043511 33 YWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMLSLGGG---V 109 (300)
Q Consensus 33 Ywg~~~~~~~l~~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVLlSiGG~---~ 109 (300)
|+...+.+..+-+.....+++.|=+=.. +.+.. .+.| +.....+..|+.|+.|.||||-+-=. .
T Consensus 19 f~~~~G~~~d~~~ilk~~G~N~vRlRvw-v~P~~-------~g~~-----~~~~~~~~akrak~~Gm~vlldfHYSD~Wa 85 (332)
T PF07745_consen 19 FYDENGQEKDLFQILKDHGVNAVRLRVW-VNPYD-------GGYN-----DLEDVIALAKRAKAAGMKVLLDFHYSDFWA 85 (332)
T ss_dssp -B-TTSSB--HHHHHHHTT--EEEEEE--SS-TT-------TTTT-----SHHHHHHHHHHHHHTT-EEEEEE-SSSS--
T ss_pred EECCCCCCCCHHHHHHhcCCCeEEEEec-cCCcc-------cccC-----CHHHHHHHHHHHHHCCCeEEEeecccCCCC
Confidence 6654443333334444566776655321 11111 2233 24455677888889999999999621 1
Q ss_pred --CCcC----ccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCC-------------CcccHHHHHHHHHH
Q 043511 110 --GSYS----LASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQG-------------STLHWDDLARFLSA 170 (300)
Q Consensus 110 --g~~~----~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p-------------~~~~~~~l~~~Lr~ 170 (300)
+... +.+ .+..++++.|.+.- ...+++..=-|++.||=.- ...++.+|.+.|++
T Consensus 86 DPg~Q~~P~aW~~-~~~~~l~~~v~~yT------~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~a 158 (332)
T PF07745_consen 86 DPGKQNKPAAWAN-LSFDQLAKAVYDYT------KDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNA 158 (332)
T ss_dssp BTTB-B--TTCTS-SSHHHHHHHHHHHH------HHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHH
T ss_pred CCCCCCCCccCCC-CCHHHHHHHHHHHH------HHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHH
Confidence 1111 111 12233443333311 1123333333444443321 13577777777765
Q ss_pred h----hc--CCCceEEEeCCCCCCC--cchhhhhhh-cCCCceEEeeecCCCCCCCCCCChhhHHHHHHHHHccCCCCeE
Q 043511 171 Y----SS--RGKKVYLTAAPQCPFP--DRFLGAALN-TGLFDYVWVQFYNNPPCQYSSGNTQNLISSFNRWASSLRNGKL 241 (300)
Q Consensus 171 ~----~~--~g~~~llTaAp~~~~~--d~~~~~~l~-~~~~D~invq~Yd~~~~~~~~~~~~~~~~~~~~w~~g~p~~Kl 241 (300)
- ++ ...+.+|-.+-..... ...++.... ...+|.|-+-+|-.+. ++.+.+...++...+.+. .+|
T Consensus 159 g~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~-----~~l~~l~~~l~~l~~ry~-K~V 232 (332)
T PF07745_consen 159 GIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWH-----GTLEDLKNNLNDLASRYG-KPV 232 (332)
T ss_dssp HHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEEEE-STTS-----T-HHHHHHHHHHHHHHHT--EE
T ss_pred HHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcCCCcceEEEecCCCCc-----chHHHHHHHHHHHHHHhC-Cee
Confidence 3 22 2344555555322100 012222222 4679999999998763 234444444544443332 355
Q ss_pred EE---eeecCCCCC-C-----------CCCc-ChH---HHHHHHhHhhhcC--CCCceEEEeecccc
Q 043511 242 FL---GLPAAPAAA-G-----------SGYI-PPN---VLTSQVLPQIKTS--PKYGGVMLWSKFFD 287 (300)
Q Consensus 242 vl---G~p~~~~~a-~-----------~Gyv-~~~---~l~~~~~~~~~~~--~~~gGvm~W~~~~d 287 (300)
++ |.|....+. + .||- +|+ +..+.+++.++.. .+--||+-||-.|-
T Consensus 233 ~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYWeP~w~ 299 (332)
T PF07745_consen 233 MVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPNGGGLGVFYWEPAWI 299 (332)
T ss_dssp EEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEEEEE-TT-G
T ss_pred EEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEEEeeccccc
Confidence 55 555542211 0 1222 342 2233445556654 35669999996654
No 79
>smart00642 Aamy Alpha-amylase domain.
Probab=40.27 E-value=38 Score=28.70 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=34.9
Q ss_pred cccCCCccEEEEceeeecCC-----CCcceeecCCCCCCCCCChhhHHHHHHHHhhCCceEEEEE
Q 043511 46 TCATGKYAYVNIAFLNKFGN-----GQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 46 ~~~~~~~thii~aF~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
+...-++|+|-+.=+..... .++...++... +|.-++..++.+.|++||++|+||++=+
T Consensus 27 yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i-~~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 27 YLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQI-DPRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred HHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCC-CcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 34456788887753222221 11111222111 2334567889999999999999999865
No 80
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=39.98 E-value=1.1e+02 Score=28.82 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHhhCCceEEEEEc--------------------------C-------CCCC---cCccChhhHHHHHHHH
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSLG--------------------------G-------GVGS---YSLASVADAKNVADYL 127 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSiG--------------------------G-------~~g~---~~~~s~~~~~~fa~~l 127 (300)
.+...+.|+.+|++|+||++.+= | |.|. ..|.+++.++-+.+.+
T Consensus 63 FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~ 142 (317)
T cd06600 63 FPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLF 142 (317)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHH
Confidence 55667888888989999987751 0 1111 1344566666665554
Q ss_pred HHhhcCCCCCcccccccccceeeeeccCCC
Q 043511 128 WNNFLGGTSSSRPLGAAVLDGIDFDIEQGS 157 (300)
Q Consensus 128 ~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~ 157 (300)
. +++.+.|+||+=+|.-.|.
T Consensus 143 ~----------~~~~~~gvdg~w~D~~Ep~ 162 (317)
T cd06600 143 S----------EWLNSQGVDGIWLDMNEPS 162 (317)
T ss_pred H----------HHhhcCCCceEEeeCCCCc
Confidence 3 3456899999999976664
No 81
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=39.68 E-value=30 Score=30.72 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHhhCCceEEEEEcCCC
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSLGGGV 109 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSiGG~~ 109 (300)
...+.+.|+.++..+.++.+-+||..
T Consensus 153 ~~~~~~~i~~L~~~~~~~~i~vGG~~ 178 (213)
T cd02069 153 LDEMVEVAEEMNRRGIKIPLLIGGAA 178 (213)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEChh
Confidence 45677888888888889999999963
No 82
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=39.37 E-value=2e+02 Score=27.34 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHhhCCceEEEEE
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
.+.+.+.+..+|..|-|+++=|
T Consensus 77 i~~~~~l~~~vh~~G~~i~~QL 98 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAILQI 98 (353)
T ss_pred hHHHHHHHHHHHhCCCeEEEEe
Confidence 4666777888899999988665
No 83
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=38.75 E-value=1e+02 Score=34.64 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=20.0
Q ss_pred ChhhHHHHHHHHhhCCceEEEEE
Q 043511 83 GCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 83 ~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
+..++++.|++||++|++|+|=+
T Consensus 245 ~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 245 GEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred cHHHHHHHHHHHHHCCCEEEEEE
Confidence 56789999999999999999853
No 84
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.66 E-value=2.4e+02 Score=27.15 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHhhCCceEEEEE
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
.+.+.+.+..+|..|-|+++=|
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL 98 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQL 98 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEec
Confidence 4566667777899999998777
No 85
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=37.99 E-value=64 Score=32.78 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=35.6
Q ss_pred ccccCCCccEEEEceeeecC--CCCcceeecCCCCCCCCCChhhHHHHHHHHhhCCceEEEEE
Q 043511 45 STCATGKYAYVNIAFLNKFG--NGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 45 ~~~~~~~~thii~aF~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
+++..-++|+|-+.=+...+ +.++...++-. -+|.-++..++.+.|++||++|+||+|=+
T Consensus 34 ~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~-id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 34 DYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYA-INPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCccccCc-cCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 34445678888775222211 11221112111 13444667899999999999999999863
No 86
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=37.55 E-value=46 Score=31.54 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=30.2
Q ss_pred hCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCC
Q 043511 96 SRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGS 157 (300)
Q Consensus 96 ~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~ 157 (300)
.....+.+.|+|. +++.|++.. +.+.++|+|||||+.-.|.
T Consensus 62 ~~e~p~~vQl~g~----------~p~~~~~aA-----------~~~~~~g~d~IdlN~gCP~ 102 (333)
T PRK11815 62 PEEHPVALQLGGS----------DPADLAEAA-----------KLAEDWGYDEINLNVGCPS 102 (333)
T ss_pred CCCCcEEEEEeCC----------CHHHHHHHH-----------HHHHhcCCCEEEEcCCCCH
Confidence 4467899999995 345666654 2457789999999987774
No 87
>PLN03231 putative alpha-galactosidase; Provisional
Probab=37.38 E-value=2e+02 Score=27.79 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc----ccHHHHHHHHHHhhcCCCceEEEeCCC
Q 043511 120 AKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST----LHWDDLARFLSAYSSRGKKVYLTAAPQ 185 (300)
Q Consensus 120 ~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~----~~~~~l~~~Lr~~~~~g~~~llTaAp~ 185 (300)
++++.+++.+ .+.++|+|=|-+|+=++.. +.|..|-++|+. .|+..++|..|.
T Consensus 161 aq~y~~~~a~----------~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~---tGRpIv~Slc~g 217 (357)
T PLN03231 161 GKLFIQSLYD----------QYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRN---SGRPMIYSLSPG 217 (357)
T ss_pred HHHHHHHHHH----------HHHHhCCCEEeecccCCCCcccHHHHHHHHHHHHH---hCCCeEEEecCC
Confidence 4555565544 4578899999999876532 345555555544 477888888663
No 88
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=37.03 E-value=77 Score=29.84 Aligned_cols=39 Identities=21% Similarity=0.067 Sum_probs=29.0
Q ss_pred CceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCC
Q 043511 98 GIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGS 157 (300)
Q Consensus 98 g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~ 157 (300)
+..+.+.|+|. +++.|++... .+.+.|+|+|||+.=.|.
T Consensus 62 e~p~~vQl~g~----------~p~~~~~aA~-----------~~~~~g~d~IdiN~GCP~ 100 (312)
T PRK10550 62 GTLVRIQLLGQ----------YPQWLAENAA-----------RAVELGSWGVDLNCGCPS 100 (312)
T ss_pred CCcEEEEeccC----------CHHHHHHHHH-----------HHHHcCCCEEEEeCCCCc
Confidence 57899999985 3556666542 246679999999988875
No 89
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=36.36 E-value=1.5e+02 Score=27.49 Aligned_cols=51 Identities=8% Similarity=0.096 Sum_probs=32.2
Q ss_pred HHHHHHHHhh--CCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCC
Q 043511 87 VSDAIKSCQS--RGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGS 157 (300)
Q Consensus 87 ~~~~Ik~~q~--~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~ 157 (300)
..+.++.+++ +.+.+++|+-|.. +.+.+++.+ +.+.+.+.|+|||++-.|.
T Consensus 86 ~~~~~~~~~~~~~~~p~i~si~G~~---------~~~~~~~~a-----------~~~~~~gad~ielN~sCP~ 138 (299)
T cd02940 86 WLKEIRELKKDFPDKILIASIMCEY---------NKEDWTELA-----------KLVEEAGADALELNFSCPH 138 (299)
T ss_pred HHHHHHHHHhhCCCCeEEEEecCCC---------CHHHHHHHH-----------HHHHhcCCCEEEEECCCCC
Confidence 3344555443 2578999997741 123444433 2345678999999999885
No 90
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=35.35 E-value=81 Score=29.97 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=17.8
Q ss_pred ChhhHHHHHHHHhhCCceEEEE
Q 043511 83 GCRVVSDAIKSCQSRGIKVMLS 104 (300)
Q Consensus 83 ~~~~~~~~Ik~~q~~g~KVLlS 104 (300)
.++...+.|+.+|++|+||+|.
T Consensus 83 ~FPdp~~mi~~Lh~~G~kv~l~ 104 (340)
T cd06597 83 RWPNPKGMIDELHEQGVKVLLW 104 (340)
T ss_pred cCCCHHHHHHHHHHCCCEEEEE
Confidence 3566788899999999999863
No 91
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=35.34 E-value=70 Score=29.77 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=18.5
Q ss_pred ChhhHHHHHHHHhhCCceEEEEE
Q 043511 83 GCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 83 ~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
..+...+.|+.+|+.|+|+++.+
T Consensus 68 ~FPdp~~mi~~l~~~G~k~~l~i 90 (303)
T cd06592 68 KFPDPKGMIDQLHDLGFRVTLWV 90 (303)
T ss_pred hCCCHHHHHHHHHHCCCeEEEEE
Confidence 35667788899899999999864
No 92
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=35.19 E-value=1.2e+02 Score=28.33 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=18.8
Q ss_pred ChhhHHHHHHHHhhCCceEEEEE
Q 043511 83 GCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 83 ~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
.++...+.|+.+|++|+||++.+
T Consensus 68 ~FPdp~~mi~~L~~~G~k~~~~v 90 (317)
T cd06598 68 AFPDPAGMIADLAKKGVKTIVIT 90 (317)
T ss_pred cCCCHHHHHHHHHHcCCcEEEEE
Confidence 35566788888899999999977
No 93
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=34.74 E-value=2.9e+02 Score=24.34 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHhhCCceEEEEEcC
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSLGG 107 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSiGG 107 (300)
...+.+.|+.|++.|++|+|.+=.
T Consensus 61 ~~~ld~~v~~a~~~gi~vild~h~ 84 (281)
T PF00150_consen 61 LARLDRIVDAAQAYGIYVILDLHN 84 (281)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEecc
Confidence 567789999999999999999955
No 94
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=34.65 E-value=1.3e+02 Score=26.88 Aligned_cols=51 Identities=6% Similarity=0.090 Sum_probs=33.4
Q ss_pred hhHHHHHHHHhhCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCC
Q 043511 85 RVVSDAIKSCQSRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGS 157 (300)
Q Consensus 85 ~~~~~~Ik~~q~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~ 157 (300)
..+...++.++..+..+.++|.|.+ ++.+++-+ +.+.++ .|+|||+..-|.
T Consensus 59 ~~~~~~~~~~~~~~~p~~vqi~g~~----------~~~~~~aa-----------~~~~~~-~~~ielN~gCP~ 109 (233)
T cd02911 59 EFIEGEIKALKDSNVLVGVNVRSSS----------LEPLLNAA-----------ALVAKN-AAILEINAHCRQ 109 (233)
T ss_pred HHHHHHHHHhhccCCeEEEEecCCC----------HHHHHHHH-----------HHHhhc-CCEEEEECCCCc
Confidence 4445667766667889999998852 23333322 234454 599999999875
No 95
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=34.24 E-value=2.9e+02 Score=23.40 Aligned_cols=113 Identities=16% Similarity=0.154 Sum_probs=62.9
Q ss_pred CCCccEEEEceeeecCCCCcceeecCCCCCCCCCChhhHHHHHHHHhhCCceEEEEEcCCCCCcCccC----hhhHHHHH
Q 043511 49 TGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMLSLGGGVGSYSLAS----VADAKNVA 124 (300)
Q Consensus 49 ~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVLlSiGG~~g~~~~~s----~~~~~~fa 124 (300)
.-++++||+-...-.+....|.--....|. ......+...++.++..|+||.++++=...-+.-.+ .+.++..+
T Consensus 31 ~~GidtlIlq~~~~~~~~~yps~~~~~~~~--~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~~~~v~ 108 (166)
T PF14488_consen 31 AIGIDTLILQWTGYGGFAFYPSKLSPGGFY--MPPVDLLEMILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAERNKQVA 108 (166)
T ss_pred HcCCcEEEEEEeecCCcccCCccccCcccc--CCcccHHHHHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHHHHHHH
Confidence 457899888755432211122110122221 112345667888889999999999986531111011 12345677
Q ss_pred HHHHHhhcCCCCCcccccccccceeeeeccCCCc-----ccHHHHHHHHHHhh
Q 043511 125 DYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST-----LHWDDLARFLSAYS 172 (300)
Q Consensus 125 ~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~-----~~~~~l~~~Lr~~~ 172 (300)
+.++..|+ ..-.|.|.=|-.|-... +.+..|.+.|+++.
T Consensus 109 ~el~~~yg---------~h~sf~GWYip~E~~~~~~~~~~~~~~l~~~lk~~s 152 (166)
T PF14488_consen 109 DELWQRYG---------HHPSFYGWYIPYEIDDYNWNAPERFALLGKYLKQIS 152 (166)
T ss_pred HHHHHHHc---------CCCCCceEEEecccCCcccchHHHHHHHHHHHHHhC
Confidence 88887663 22268999998887642 33444555555543
No 96
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=33.45 E-value=85 Score=32.02 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=36.5
Q ss_pred ccccCCCccEEEEceeeecC--CCCcceeecCCCCCCCCCChhhHHHHHHHHhhCCceEEEEE
Q 043511 45 STCATGKYAYVNIAFLNKFG--NGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 45 ~~~~~~~~thii~aF~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
++...-++|+|-+.=+...+ +.++-..|+-. .+|.-++...+.+.|++||++|+||+|=+
T Consensus 40 dyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~-id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 40 DYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTA-IDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHHhCCCCEEEECCCCCCCCCCCCCCcccCCC-cCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 34446689998776222111 11221122211 13445667899999999999999999754
No 97
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.20 E-value=77 Score=31.99 Aligned_cols=46 Identities=15% Similarity=0.330 Sum_probs=33.9
Q ss_pred ccccccccceeeeeccCCCcccHHHHHHHHHHhhcCCCceEEEeCCCCC
Q 043511 139 RPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCP 187 (300)
Q Consensus 139 r~~~~~~~DGiDiD~E~p~~~~~~~l~~~Lr~~~~~g~~~llTaAp~~~ 187 (300)
-.+++-|+|||.|- ++.....|.+|-+.++.+++ ++++|+.+.--.
T Consensus 236 GVIGedGv~GI~Ls-~~~~G~~fk~fQ~~Ik~l~k--qGVlLav~SKN~ 281 (574)
T COG3882 236 GVIGEDGVDGIRLS-NSAEGEAFKTFQNFIKGLKK--QGVLLAVCSKNT 281 (574)
T ss_pred cccccccccceeec-CCCCchhHHHHHHHHHHHHh--ccEEEEEecCCc
Confidence 36889999999999 44444567778888888775 468888875543
No 98
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=33.01 E-value=1.7e+02 Score=27.46 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHhhCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc-----
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST----- 158 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~----- 158 (300)
...+.+.|+..+..++.|++||+|...+ .. ++..+.|++.+-. +.. ..|+|+|++=-|..
T Consensus 114 ~~~~~~~l~~~~~~~~plivsi~g~~~~-~~--~~~~~d~~~~~~~-----------~~~-~ad~ielN~scP~~~g~~~ 178 (327)
T cd04738 114 ADAVAKRLKKRRPRGGPLGVNIGKNKDT-PL--EDAVEDYVIGVRK-----------LGP-YADYLVVNVSSPNTPGLRD 178 (327)
T ss_pred HHHHHHHHHHhccCCCeEEEEEeCCCCC-cc--cccHHHHHHHHHH-----------HHh-hCCEEEEECCCCCCCcccc
Confidence 3445566766444578899999987422 11 2234556554321 233 38999999966642
Q ss_pred ----ccHHHHHHHHHHhh
Q 043511 159 ----LHWDDLARFLSAYS 172 (300)
Q Consensus 159 ----~~~~~l~~~Lr~~~ 172 (300)
+....+++.+|+..
T Consensus 179 ~~~~~~~~~iv~av~~~~ 196 (327)
T cd04738 179 LQGKEALRELLTAVKEER 196 (327)
T ss_pred ccCHHHHHHHHHHHHHHH
Confidence 24556666666654
No 99
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.91 E-value=1.2e+02 Score=28.43 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=18.7
Q ss_pred ChhhHHHHHHHHhhCCceEEEEE
Q 043511 83 GCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 83 ~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
.++...+.|+.+|++|+||++++
T Consensus 71 ~FPdp~~mi~~L~~~g~k~~~~i 93 (317)
T cd06599 71 RFPDPAAFVAKFHERGIRLAPNI 93 (317)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEe
Confidence 35667788999999999999854
No 100
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=32.07 E-value=2.2e+02 Score=26.79 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHhh-CCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCC
Q 043511 84 CRVVSDAIKSCQS-RGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQG 156 (300)
Q Consensus 84 ~~~~~~~Ik~~q~-~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p 156 (300)
...+.+.|+.+++ .++.|++||+|.+ .++-...+.. +.+.++|+|+|++=.|
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~~-------~~e~~~~a~~--------------~~~agad~ielN~scp 138 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGSS-------AGGWVDYARQ--------------IEQAGADALELNIYYL 138 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccCC-------HHHHHHHHHH--------------HHHcCCCEEEEeCCCC
Confidence 3455566665543 4689999998842 1222233332 4566899999988653
No 101
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=31.63 E-value=98 Score=28.11 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=39.5
Q ss_pred ChhhHHHHHHHHhhCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCC
Q 043511 83 GCRVVSDAIKSCQSRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGS 157 (300)
Q Consensus 83 ~~~~~~~~Ik~~q~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~ 157 (300)
..+...+.|+.+|++|+||++.+== .-|+-|.+.+. +++.+.|+||+=+|.-.|.
T Consensus 64 ~Fpdp~~~i~~l~~~g~~~~~~~~P----------~v~~w~~~~~~----------~~~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 64 KFPNPKSMIDELHDNGVKLVLWIDP----------YIREWWAEVVK----------KLLVSLGVDGFWTDMGEPS 118 (265)
T ss_pred hCCCHHHHHHHHHHCCCEEEEEeCh----------hHHHHHHHHHH----------HhhccCCCCEEeccCCCCC
Confidence 4567778899999999999997621 11555655553 2457899999999976653
No 102
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=31.40 E-value=50 Score=32.88 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=22.9
Q ss_pred CCCCChhhHHHHHHHHhhCCceEEEEE
Q 043511 79 PAAGGCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 79 ~~~~~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
|.-++..++++.|++||++|+||++=+
T Consensus 75 ~~fGt~~dl~~Li~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 75 TKYGTKEELLNAIDALHENGIKVYADV 101 (479)
T ss_pred cCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 444677899999999999999999864
No 103
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=31.19 E-value=2.3e+02 Score=23.95 Aligned_cols=69 Identities=25% Similarity=0.213 Sum_probs=38.6
Q ss_pred hhHHHHHHHHhhCCceEEEEEcCCCCCcCc-cChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCcccH--
Q 043511 85 RVVSDAIKSCQSRGIKVMLSLGGGVGSYSL-ASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHW-- 161 (300)
Q Consensus 85 ~~~~~~Ik~~q~~g~KVLlSiGG~~g~~~~-~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~~~~-- 161 (300)
+.+...++.|++.|++| |.. .+.. .+.+++++-|++.++. +++ .-.=+-||+|.+.....
T Consensus 39 ~~f~~n~~~a~~aGl~v----G~Y--hf~~~~~~~~a~~eA~~f~~~----------~~~-~~~~~~lD~E~~~~~~~~~ 101 (177)
T cd06523 39 LKYKNNIKEFKKRGIPF----GVY--AFARGTSTADAKAEARDFYNR----------ANK-KPTFYVLDVEVTSMSDMNA 101 (177)
T ss_pred HHHHHHHHHHHHcCCCe----EEE--EEeccCCHHHHHHHHHHHHHH----------hcC-CCceEEEeeccCCcchHHH
Confidence 67889999999999865 332 1111 2334555556655432 222 12236689998764333
Q ss_pred --HHHHHHHHH
Q 043511 162 --DDLARFLSA 170 (300)
Q Consensus 162 --~~l~~~Lr~ 170 (300)
..|++++++
T Consensus 102 ~~~~f~~~v~~ 112 (177)
T cd06523 102 GVQAFISELRR 112 (177)
T ss_pred HHHHHHHHHHH
Confidence 344444444
No 104
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=29.82 E-value=64 Score=30.20 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=29.6
Q ss_pred hhCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCC
Q 043511 95 QSRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGS 157 (300)
Q Consensus 95 q~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~ 157 (300)
+..+..+.++|+|. +++.|++... .+.++|+|||||+.=.|.
T Consensus 59 ~~~~~p~i~ql~g~----------~~~~~~~aa~-----------~~~~~G~d~IelN~gcP~ 100 (319)
T TIGR00737 59 AEDETPISVQLFGS----------DPDTMAEAAK-----------INEELGADIIDINMGCPV 100 (319)
T ss_pred CCccceEEEEEeCC----------CHHHHHHHHH-----------HHHhCCCCEEEEECCCCH
Confidence 34578899999995 2345555442 356789999999876663
No 105
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=29.76 E-value=4.6e+02 Score=24.30 Aligned_cols=111 Identities=16% Similarity=0.187 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHhhCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCcccHHH
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDD 163 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~~~~~~ 163 (300)
...+.+.|+.+-..|++=++- .|.+|.+..-+.++|.++.+.+.....+ .-+ .+=|+- . +...
T Consensus 27 ~~~l~~li~~l~~~Gv~Gi~~-~GstGE~~~Lt~eEr~~~~~~~~~~~~~----~~p----vi~gv~-------~-~t~~ 89 (303)
T PRK03620 27 EAAYREHLEWLAPYGAAALFA-AGGTGEFFSLTPDEYSQVVRAAVETTAG----RVP----VIAGAG-------G-GTAQ 89 (303)
T ss_pred HHHHHHHHHHHHHcCCCEEEE-CcCCcCcccCCHHHHHHHHHHHHHHhCC----CCc----EEEecC-------C-CHHH
Confidence 467788888887889998874 4555655556778899998877652110 000 112221 1 3445
Q ss_pred HHHHHHHhhcCCCceEEEeCCCCCCCcc-----hhhhhhhcCCCceEEeeecCCCC
Q 043511 164 LARFLSAYSSRGKKVYLTAAPQCPFPDR-----FLGAALNTGLFDYVWVQFYNNPP 214 (300)
Q Consensus 164 l~~~Lr~~~~~g~~~llTaAp~~~~~d~-----~~~~~l~~~~~D~invq~Yd~~~ 214 (300)
-++..|...+.|-+.++.++|.-..++. ++.. + .+..| +-|+.||.++
T Consensus 90 ~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~-v-a~~~~-lpi~lYn~~g 142 (303)
T PRK03620 90 AIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEA-V-CKSTD-LGVIVYNRDN 142 (303)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHH-H-HHhCC-CCEEEEcCCC
Confidence 5555666554466666666664321211 1211 2 13344 6788999653
No 106
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=29.34 E-value=90 Score=29.49 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=29.8
Q ss_pred hCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCC
Q 043511 96 SRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGS 157 (300)
Q Consensus 96 ~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~ 157 (300)
.....+.+.|+|. +++.|++.. +.+.++++|+|||+.=-|.
T Consensus 52 ~~e~p~~vQl~g~----------~p~~~~~aA-----------~~~~~~g~d~IDlN~GCP~ 92 (318)
T TIGR00742 52 PEESPVALQLGGS----------DPNDLAKCA-----------KIAEKRGYDEINLNVGCPS 92 (318)
T ss_pred CCCCcEEEEEccC----------CHHHHHHHH-----------HHHHhCCCCEEEEECCCCH
Confidence 4467799999985 345566544 2456789999999998774
No 107
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=29.00 E-value=1.3e+02 Score=32.74 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=38.3
Q ss_pred ccccCCCccEEEEceeeecCCCCcceeecCCC--CCCCCCChhhHHHHHHHHhhCCceEEEEE
Q 043511 45 STCATGKYAYVNIAFLNKFGNGQTPEINLAGH--CNPAAGGCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 45 ~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
++...-++|||-++=+.....+.....+..++ .+|..++...+...|++||++|+||++-|
T Consensus 27 ~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 27 PYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34456789999887322111121112222222 24555678899999999999999999976
No 108
>PRK15108 biotin synthase; Provisional
Probab=28.08 E-value=3.1e+02 Score=26.09 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=25.5
Q ss_pred ccccccceeeeeccCCC--------cccHHHHHHHHHHhhcCC
Q 043511 141 LGAAVLDGIDFDIEQGS--------TLHWDDLARFLSAYSSRG 175 (300)
Q Consensus 141 ~~~~~~DGiDiD~E~p~--------~~~~~~l~~~Lr~~~~~g 175 (300)
+++.|+|++.++.|... ...|...++.++..++.|
T Consensus 142 LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G 184 (345)
T PRK15108 142 LANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAG 184 (345)
T ss_pred HHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcC
Confidence 56789999999999831 146777777777776444
No 109
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=28.04 E-value=4.5e+02 Score=23.70 Aligned_cols=112 Identities=16% Similarity=0.200 Sum_probs=62.2
Q ss_pred hhhHHHHHHHHhhCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCcccHHH
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDD 163 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~~~~~~ 163 (300)
...+.+.|+.+...|++-++ +.|-+|....-+.++|+++++.+.+...+ +. . .+=|+ +......
T Consensus 17 ~~~~~~~i~~l~~~Gv~gi~-~~GstGE~~~ls~~Er~~l~~~~~~~~~~--~~-~-----vi~gv-------~~~~~~~ 80 (281)
T cd00408 17 LDALRRLVEFLIEAGVDGLV-VLGTTGEAPTLTDEERKEVIEAVVEAVAG--RV-P-----VIAGV-------GANSTRE 80 (281)
T ss_pred HHHHHHHHHHHHHcCCCEEE-ECCCCcccccCCHHHHHHHHHHHHHHhCC--CC-e-----EEEec-------CCccHHH
Confidence 46778889998888999876 55666655555678899998877653210 00 0 01111 1123444
Q ss_pred HHHHHHHhhcCCCceEEEeCCCCCCCc-c----hhhhhhhcCCCceEEeeecCCCC
Q 043511 164 LARFLSAYSSRGKKVYLTAAPQCPFPD-R----FLGAALNTGLFDYVWVQFYNNPP 214 (300)
Q Consensus 164 l~~~Lr~~~~~g~~~llTaAp~~~~~d-~----~~~~~l~~~~~D~invq~Yd~~~ 214 (300)
-++..|...+.|-+-++.+.|.-..+. . ++.... +..| +-++.||.+.
T Consensus 81 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia--~~~~-~pi~iYn~P~ 133 (281)
T cd00408 81 AIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVA--DASD-LPVILYNIPG 133 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHH--hcCC-CCEEEEECcc
Confidence 555555554446666666666532111 1 121221 3344 6778999874
No 110
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=28.03 E-value=4.8e+02 Score=23.95 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHhhCCceEEEEEcCCCCCcCccChhhHHHHHHHHHH
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSLGGGVGSYSLASVADAKNVADYLWN 129 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~ 129 (300)
...+.+.++.+...|++-++- +|.+|....-+.++|.++++.+.+
T Consensus 20 ~~~l~~l~~~l~~~Gv~gi~v-~GstGE~~~Ls~eEr~~l~~~~~~ 64 (289)
T cd00951 20 EDAYRAHVEWLLSYGAAALFA-AGGTGEFFSLTPDEYAQVVRAAVE 64 (289)
T ss_pred HHHHHHHHHHHHHcCCCEEEE-CcCCcCcccCCHHHHHHHHHHHHH
Confidence 456778888888889998874 455565555567889999888765
No 111
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=27.27 E-value=3.8e+02 Score=26.12 Aligned_cols=54 Identities=6% Similarity=0.093 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHhh--CCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCC
Q 043511 84 CRVVSDAIKSCQS--RGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGS 157 (300)
Q Consensus 84 ~~~~~~~Ik~~q~--~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~ 157 (300)
.....+.++.+++ +.+.|++||.|.. +.+.+.+.+ +.+.+.+.|+|.|++-.|.
T Consensus 97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~---------s~~~~~~~a-----------~~~e~~GaD~iELNiSCPn 152 (385)
T PLN02495 97 FETMLAEFKQLKEEYPDRILIASIMEEY---------NKDAWEEII-----------ERVEETGVDALEINFSCPH 152 (385)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEccCCC---------CHHHHHHHH-----------HHHHhcCCCEEEEECCCCC
Confidence 3444556766653 4689999996531 123333322 1246778999999997664
No 112
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=27.22 E-value=3.6e+02 Score=25.62 Aligned_cols=109 Identities=16% Similarity=0.099 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHhhCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc-----
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST----- 158 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~----- 158 (300)
...+.+.|+..+ .++.|++||+|-..+.. ....+.|++.+-. +.+ +.|++++++--|..
T Consensus 124 ~~~~~~~l~~~~-~~~pvivsI~~~~~~~~---~~~~~d~~~~~~~-----------~~~-~ad~lelN~scP~~~g~~~ 187 (344)
T PRK05286 124 ADALAERLKKAY-RGIPLGINIGKNKDTPL---EDAVDDYLICLEK-----------LYP-YADYFTVNISSPNTPGLRD 187 (344)
T ss_pred HHHHHHHHHHhc-CCCcEEEEEecCCCCCc---ccCHHHHHHHHHH-----------HHh-hCCEEEEEccCCCCCCccc
Confidence 344556676655 67889999988642111 1234556654421 233 48999999876642
Q ss_pred ----ccHHHHHHHHHHhhcC---CCceEEEeCCCCCCCcc-hhhhhhhcCCCceEEee
Q 043511 159 ----LHWDDLARFLSAYSSR---GKKVYLTAAPQCPFPDR-FLGAALNTGLFDYVWVQ 208 (300)
Q Consensus 159 ----~~~~~l~~~Lr~~~~~---g~~~llTaAp~~~~~d~-~~~~~l~~~~~D~invq 208 (300)
+....+++++|+.... ....++=..|.....+. .+-..+...-+|.|.+-
T Consensus 188 ~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~ 245 (344)
T PRK05286 188 LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIAT 245 (344)
T ss_pred ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEe
Confidence 2445566666664321 02345555543211010 11122223456777665
No 113
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=27.01 E-value=5e+02 Score=23.91 Aligned_cols=112 Identities=15% Similarity=0.240 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHhhCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccce-eeeeccCCCcccHH
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDG-IDFDIEQGSTLHWD 162 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DG-iDiD~E~p~~~~~~ 162 (300)
...+.+.++.+-..|++-++ ++|.+|....-|.++|.++.+.+.+.. +| +.+ +=.-+..+..
T Consensus 20 ~~~l~~lv~~~~~~Gv~gi~-v~GstGE~~~Ls~~Er~~l~~~~~~~~---------------~g~~pv-i~gv~~~~t~ 82 (294)
T TIGR02313 20 EEALRELIEFQIEGGSHAIS-VGGTSGEPGSLTLEERKQAIENAIDQI---------------AGRIPF-APGTGALNHD 82 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEE-ECccCcccccCCHHHHHHHHHHHHHHh---------------CCCCcE-EEECCcchHH
Confidence 56777888887788998776 567777666667888999988776421 11 111 0001123455
Q ss_pred HHHHHHHHhhcCCCceEEEeCCCCCCCcc-----hhhhhhhcCCCceEEeeecCCCC
Q 043511 163 DLARFLSAYSSRGKKVYLTAAPQCPFPDR-----FLGAALNTGLFDYVWVQFYNNPP 214 (300)
Q Consensus 163 ~l~~~Lr~~~~~g~~~llTaAp~~~~~d~-----~~~~~l~~~~~D~invq~Yd~~~ 214 (300)
.-++..|...+.|-+.++.+.|.-..++. ++.. + .+..+=+-|+.||.+.
T Consensus 83 ~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~-i-a~a~~~lpv~iYn~P~ 137 (294)
T TIGR02313 83 ETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAE-V-ADAVPDFPIIIYNIPG 137 (294)
T ss_pred HHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHH-H-HHhccCCCEEEEeCch
Confidence 56666666655576667777765321221 1222 2 1334225788999874
No 114
>PRK10785 maltodextrin glucosidase; Provisional
Probab=26.80 E-value=63 Score=33.29 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=23.4
Q ss_pred CCCCCChhhHHHHHHHHhhCCceEEEEE
Q 043511 78 NPAAGGCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 78 ~~~~~~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
+|.-++...+.+.|++||++|+||+|=+
T Consensus 219 Dp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 219 DPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4555677899999999999999999754
No 115
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=26.72 E-value=3e+02 Score=23.61 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=14.5
Q ss_pred hhHHHHHHHHhhCCceE
Q 043511 85 RVVSDAIKSCQSRGIKV 101 (300)
Q Consensus 85 ~~~~~~Ik~~q~~g~KV 101 (300)
+.+...++.|++.|++|
T Consensus 42 ~~~~~n~~~A~~aGl~v 58 (192)
T cd06522 42 PYAASQIANAKAAGLKV 58 (192)
T ss_pred hHHHHHHHHHHHCCCee
Confidence 56789999999999875
No 116
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=26.61 E-value=4.9e+02 Score=23.59 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=63.5
Q ss_pred hhhHHHHHHHHhhCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCC-CcccHH
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQG-STLHWD 162 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p-~~~~~~ 162 (300)
...+.+.|+.+...|++-++-. |.+|.....|.++|+++.+.+.+.. . +.+.+ =-. +..+..
T Consensus 20 ~~~~~~~i~~l~~~Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~~----------~----~~~~v--i~gv~~~~~~ 82 (284)
T cd00950 20 FDALERLIEFQIENGTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEAV----------N----GRVPV--IAGTGSNNTA 82 (284)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHHh----------C----CCCcE--EeccCCccHH
Confidence 4677888999888999987755 5555445556788889888775421 1 11111 011 123455
Q ss_pred HHHHHHHHhhcCCCceEEEeCCCCCCCc-c----hhhhhhhcCCCceEEeeecCCCC
Q 043511 163 DLARFLSAYSSRGKKVYLTAAPQCPFPD-R----FLGAALNTGLFDYVWVQFYNNPP 214 (300)
Q Consensus 163 ~l~~~Lr~~~~~g~~~llTaAp~~~~~d-~----~~~~~l~~~~~D~invq~Yd~~~ 214 (300)
.-++..|...+.|-+.++.+.|.-..+. . ++.... +..| +-++.||.+.
T Consensus 83 ~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia--~~~~-~pi~lYn~P~ 136 (284)
T cd00950 83 EAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIA--EATD-LPVILYNVPG 136 (284)
T ss_pred HHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH--hcCC-CCEEEEEChh
Confidence 6666666665557666777766532121 1 122222 3344 5677999764
No 117
>PTZ00301 uridine kinase; Provisional
Probab=26.46 E-value=1.6e+02 Score=26.00 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=16.6
Q ss_pred eeccCCCcccHHHHHHHHHHhhc
Q 043511 151 FDIEQGSTLHWDDLARFLSAYSS 173 (300)
Q Consensus 151 iD~E~p~~~~~~~l~~~Lr~~~~ 173 (300)
.||+.|..-++..|.+.|+++++
T Consensus 59 ~~~d~p~a~D~~~l~~~l~~L~~ 81 (210)
T PTZ00301 59 TNYDHPKSLEHDLLTTHLRELKS 81 (210)
T ss_pred CCCCChhhhCHHHHHHHHHHHHc
Confidence 36677766678888888877764
No 118
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=26.16 E-value=5e+02 Score=23.63 Aligned_cols=112 Identities=18% Similarity=0.278 Sum_probs=64.2
Q ss_pred hhhHHHHHHHHhhCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCcccHHH
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDD 163 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~~~~~~ 163 (300)
...+.+.|+.+-..|++=++ +.|.+|....-+.++|+++.+.+.+... | | --.+=|+ +..+...
T Consensus 18 ~~~~~~~i~~l~~~Gv~Gi~-~~GstGE~~~Ls~~Er~~~~~~~~~~~~-~----~---~~vi~gv-------~~~s~~~ 81 (285)
T TIGR00674 18 FAALEKLIDFQIENGTDAIV-VVGTTGESPTLSHEEHKKVIEFVVDLVN-G----R---VPVIAGT-------GSNATEE 81 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEE-ECccCcccccCCHHHHHHHHHHHHHHhC-C----C---CeEEEeC-------CCccHHH
Confidence 45677888888788988776 4566665555677888888887664210 0 0 0011111 2234566
Q ss_pred HHHHHHHhhcCCCceEEEeCCCCCCCcc-----hhhhhhhcCCCceEEeeecCCCC
Q 043511 164 LARFLSAYSSRGKKVYLTAAPQCPFPDR-----FLGAALNTGLFDYVWVQFYNNPP 214 (300)
Q Consensus 164 l~~~Lr~~~~~g~~~llTaAp~~~~~d~-----~~~~~l~~~~~D~invq~Yd~~~ 214 (300)
-++..|...+.|-+.++.+.|.-..++. ++.. + .+..| +.|+.||++.
T Consensus 82 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~-i-~~~~~-~pi~lYn~P~ 134 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKA-I-AEEVD-LPIILYNVPS 134 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHH-H-HhcCC-CCEEEEECcH
Confidence 6666666655576666666665321211 1222 2 23445 6788999874
No 119
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=26.01 E-value=3.7e+02 Score=24.17 Aligned_cols=63 Identities=27% Similarity=0.279 Sum_probs=47.0
Q ss_pred cccccceeeeeccCCCcccHHHHHHHHHHhhcCCCceEEEeCCCCCCCcchhhhhhhcCCCceEEeeecCCC
Q 043511 142 GAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNNP 213 (300)
Q Consensus 142 ~~~~~DGiDiD~E~p~~~~~~~l~~~Lr~~~~~g~~~llTaAp~~~~~d~~~~~~l~~~~~D~invq~Yd~~ 213 (300)
-+.|-|-|-|-.| ...+..+.++.+|+. |.+.=|+.=|.+|. ..+...+ ..+|+|-+|.-|.+
T Consensus 81 a~agad~It~H~E--~~~~~~r~i~~Ik~~---G~kaGv~lnP~Tp~--~~i~~~l--~~vD~VllMsVnPG 143 (220)
T COG0036 81 AKAGADIITFHAE--ATEHIHRTIQLIKEL---GVKAGLVLNPATPL--EALEPVL--DDVDLVLLMSVNPG 143 (220)
T ss_pred HHhCCCEEEEEec--cCcCHHHHHHHHHHc---CCeEEEEECCCCCH--HHHHHHH--hhCCEEEEEeECCC
Confidence 4568999999999 456778888888886 55566888888763 2244444 68999999998854
No 120
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=25.95 E-value=1.9e+02 Score=27.46 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHhhCCceEEEEE
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
.+.+.+.++.+|+.|-|+++-|
T Consensus 80 i~~~r~l~d~vh~~G~~i~~QL 101 (337)
T PRK13523 80 IEGLHKLVTFIHDHGAKAAIQL 101 (337)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc
Confidence 4566677888899999998776
No 121
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=25.63 E-value=1.4e+02 Score=30.18 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=34.5
Q ss_pred cccCCCccEEEEceeeecC--CCCcceeecCCCCCCCCCChhhHHHHHHHHhhCCceEEEE
Q 043511 46 TCATGKYAYVNIAFLNKFG--NGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMLS 104 (300)
Q Consensus 46 ~~~~~~~thii~aF~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVLlS 104 (300)
++..-++|+|-+.=+...+ +.++-..++-. -+|.-++..++.+.|++||++|+||+|-
T Consensus 36 yl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~-vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 36 YLKWLGVDALWLLPFFQSPLRDDGYDVSDYRA-ILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHCCCCEEEECCCcCCCCCCCCCCcccccc-cChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4445678888775221111 11221122111 1344466789999999999999999984
No 122
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.24 E-value=4.9e+02 Score=22.84 Aligned_cols=63 Identities=22% Similarity=0.245 Sum_probs=40.7
Q ss_pred ccceeeeeccCCC----cccHHHHHHHHHHhhcCCCceEEEeCCCC-CCCcc-----hhhhhhhcCCCceEEeeecCCC
Q 043511 145 VLDGIDFDIEQGS----TLHWDDLARFLSAYSSRGKKVYLTAAPQC-PFPDR-----FLGAALNTGLFDYVWVQFYNNP 213 (300)
Q Consensus 145 ~~DGiDiD~E~p~----~~~~~~l~~~Lr~~~~~g~~~llTaAp~~-~~~d~-----~~~~~l~~~~~D~invq~Yd~~ 213 (300)
|-|=|| ...|. ..||...++++|+.- +++.++||.+.- ||.-. .++.+ ..-.|||-|-.|+..
T Consensus 20 GAdIiD--VKNP~EGSLGANFPWvIr~i~Ev~--p~d~~vSAT~GDvpYKPGT~slAalGaa--v~GaDYiKVGLYg~k 92 (235)
T COG1891 20 GADIID--VKNPAEGSLGANFPWVIREIREVV--PEDQEVSATVGDVPYKPGTASLAALGAA--VAGADYIKVGLYGTK 92 (235)
T ss_pred CCceEe--ccCcccCcccCCChHHHHHHHHhC--ccceeeeeeecCCCCCCchHHHHHHHhH--hhCCceEEEeecccc
Confidence 444444 45553 379999999999985 345688888764 44211 11222 256799999999753
No 123
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=24.21 E-value=4.7e+02 Score=22.62 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=47.0
Q ss_pred HHHHHHHhhCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCC------cccH
Q 043511 88 SDAIKSCQSRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGS------TLHW 161 (300)
Q Consensus 88 ~~~Ik~~q~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~------~~~~ 161 (300)
...|-+|-..|.|||+. |-+|| ..+++.||..+.+.|- .++-.|-.|-|--+... .-.|
T Consensus 31 a~~i~~~l~~G~Kvl~c--GNGgS-----aadAqHfaael~gRf~--------~eR~~lpaIaLt~dsS~lTai~NDy~y 95 (176)
T COG0279 31 AQLLVQSLLNGNKVLAC--GNGGS-----AADAQHFAAELTGRFE--------KERPSLPAIALSTDSSVLTAIANDYGY 95 (176)
T ss_pred HHHHHHHHHcCCEEEEE--CCCcc-----hhhHHHHHHHHhhHHH--------hcCCCCCeeEeecccHHHhhhhccccH
Confidence 34455555789999987 55555 4688999999987662 12234444444322210 1133
Q ss_pred HH-HHHHHHHhhcCCCceEEEeCCCCC
Q 043511 162 DD-LARFLSAYSSRGKKVYLTAAPQCP 187 (300)
Q Consensus 162 ~~-l~~~Lr~~~~~g~~~llTaAp~~~ 187 (300)
+. |-+.++.+- +..+.+|-.++...
T Consensus 96 d~vFsRqveA~g-~~GDvLigISTSGN 121 (176)
T COG0279 96 DEVFSRQVEALG-QPGDVLIGISTSGN 121 (176)
T ss_pred HHHHHHHHHhcC-CCCCEEEEEeCCCC
Confidence 33 444444443 23467888777753
No 124
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=24.20 E-value=1.6e+02 Score=25.09 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=16.7
Q ss_pred eeccCCCcccHHHHHHHHHHhhc
Q 043511 151 FDIEQGSTLHWDDLARFLSAYSS 173 (300)
Q Consensus 151 iD~E~p~~~~~~~l~~~Lr~~~~ 173 (300)
++|++|..-++..|.+.|+.+++
T Consensus 59 ~~~~~p~a~d~~~l~~~l~~L~~ 81 (194)
T PF00485_consen 59 YNFDHPDAFDFDLLKEDLKALKN 81 (194)
T ss_dssp SSTTSGGGBSHHHHHHHHHHHHT
T ss_pred cCCCCccccCHHHHHHHHHHHhC
Confidence 45566666678888888888764
No 125
>PRK02227 hypothetical protein; Provisional
Probab=24.12 E-value=5.5e+02 Score=23.36 Aligned_cols=121 Identities=22% Similarity=0.272 Sum_probs=66.2
Q ss_pred cccceeeeeccCCCc----ccHHHHHHHHHHhhcCCCceEEEeCCCC-CC-Ccchhhhhhh--cCCCceEEeeecCCCCC
Q 043511 144 AVLDGIDFDIEQGST----LHWDDLARFLSAYSSRGKKVYLTAAPQC-PF-PDRFLGAALN--TGLFDYVWVQFYNNPPC 215 (300)
Q Consensus 144 ~~~DGiDiD~E~p~~----~~~~~l~~~Lr~~~~~g~~~llTaAp~~-~~-~d~~~~~~l~--~~~~D~invq~Yd~~~~ 215 (300)
.|-|=||+ ..|.. .++...++++++... +...+|++..- |+ |+......+. ..-.|||-|=+|...
T Consensus 19 ~GaDiIDv--K~P~~GaLGA~~p~vir~Iv~~~~--~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyVKvGl~~~~-- 92 (238)
T PRK02227 19 GGADIIDV--KNPKEGSLGANFPWVIREIVAAVP--GRKPVSATIGDVPYKPGTISLAALGAAATGADYVKVGLYGGK-- 92 (238)
T ss_pred cCCCEEEc--cCCCCCCCCCCCHHHHHHHHHHhC--CCCCceeeccCCCCCchHHHHHHHHHHhhCCCEEEEcCCCCC--
Confidence 35566655 55642 577888888887753 33478888764 32 2111112221 356899999998422
Q ss_pred CCCCCChhhHHHHHHHHH---ccCCCCeEEEeeecCCCCCCCCCcChHHHHHHHhHhhhcCCCCceEEE
Q 043511 216 QYSSGNTQNLISSFNRWA---SSLRNGKLFLGLPAAPAAAGSGYIPPNVLTSQVLPQIKTSPKYGGVML 281 (300)
Q Consensus 216 ~~~~~~~~~~~~~~~~w~---~g~p~~KlvlG~p~~~~~a~~Gyv~~~~l~~~~~~~~~~~~~~gGvm~ 281 (300)
+.+...+.|..-. +..++.+.++.+-+.. ..--|-++|.++... ....+|-|+|+
T Consensus 93 -----~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD-~~r~~~~~~~~l~~~-----a~~aGf~g~Ml 150 (238)
T PRK02227 93 -----TAEEAVEVMKAVVRAVKDLDPGKIVVAAGYAD-AHRVGSVSPLSLPAI-----AADAGFDGAML 150 (238)
T ss_pred -----cHHHHHHHHHHHHHhhhhcCCCCeEEEEEecc-cccccCCChHHHHHH-----HHHcCCCEEEE
Confidence 1122223232222 2346677777766643 112245667666432 23458999997
No 126
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=23.76 E-value=4.7e+02 Score=24.16 Aligned_cols=80 Identities=14% Similarity=0.227 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHhh----CCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCccccccc---ccceeeeeccCC
Q 043511 84 CRVVSDAIKSCQS----RGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAA---VLDGIDFDIEQG 156 (300)
Q Consensus 84 ~~~~~~~Ik~~q~----~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~---~~DGiDiD~E~p 156 (300)
.....+.|+..++ .++.|++||+|. .+.+++.+. .+.+. +.|+|||+.=-|
T Consensus 73 ~~~~~~~i~~~~~~~~~~~~pvivsi~g~-----------~~~~~~~~~-----------~~~~~~~~~ad~ielN~sCP 130 (294)
T cd04741 73 LDYYLEYIRTISDGLPGSAKPFFISVTGS-----------AEDIAAMYK-----------KIAAHQKQFPLAMELNLSCP 130 (294)
T ss_pred HHHHHHHHHHHhhhccccCCeEEEECCCC-----------HHHHHHHHH-----------HHHhhccccccEEEEECCCC
Confidence 4455566665433 478899999874 123333221 12333 689999999877
Q ss_pred Cc-------ccHHHHHHHHHHhhcC-CCceEEEeCCC
Q 043511 157 ST-------LHWDDLARFLSAYSSR-GKKVYLTAAPQ 185 (300)
Q Consensus 157 ~~-------~~~~~l~~~Lr~~~~~-g~~~llTaAp~ 185 (300)
.. .+...+.+.++..++. ...+++=..|.
T Consensus 131 n~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~ 167 (294)
T cd04741 131 NVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPY 167 (294)
T ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 52 2344444444444431 24456666664
No 127
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=23.50 E-value=1.4e+02 Score=32.05 Aligned_cols=61 Identities=15% Similarity=0.247 Sum_probs=37.9
Q ss_pred ccccCCCccEEEEceeeecCCCCcceeecCCCC--CCCCCChhhHHHHHHHHhhCCceEEEEE
Q 043511 45 STCATGKYAYVNIAFLNKFGNGQTPEINLAGHC--NPAAGGCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 45 ~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
+++..-++|||-++=+.....+.....+..++. +|..++...+...+++||++|++|++-+
T Consensus 23 ~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 23 PYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred HHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 445567899998762221111111122222221 4555678889999999999999999875
No 128
>cd06417 GH25_LysA-like LysA is a cell wall endolysin produced by Lactobacillus fermentum, which degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. The N-terminal glycosyl hydrolase family 25 (GH25) domain of LysA has sequence similarity with other murein hydrolase catalytic domains while the C-terminal domain has sequence similarity with putative bacterial cell wall-binding SH3b domains. This domain family also includes LysL of Lactococcus lactis.
Probab=23.46 E-value=4e+02 Score=22.79 Aligned_cols=17 Identities=6% Similarity=-0.038 Sum_probs=14.2
Q ss_pred hhHHHHHHHHhhCCceE
Q 043511 85 RVVSDAIKSCQSRGIKV 101 (300)
Q Consensus 85 ~~~~~~Ik~~q~~g~KV 101 (300)
+.+.+.++.|++.|++|
T Consensus 36 ~~f~~n~~~A~~aGl~~ 52 (195)
T cd06417 36 PSWRSQAAQAIAAGKLL 52 (195)
T ss_pred hHHHHHHHHHHHcCCce
Confidence 57788999999999764
No 129
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=23.36 E-value=1.9e+02 Score=25.31 Aligned_cols=63 Identities=22% Similarity=0.237 Sum_probs=41.6
Q ss_pred ccccccceeeeeccCCCcccHHHHHHHHHHhhcCCCceEEEeCCCCCCCcchhhhhhhcCCCceEEeeecCC
Q 043511 141 LGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNN 212 (300)
Q Consensus 141 ~~~~~~DGiDiD~E~p~~~~~~~l~~~Lr~~~~~g~~~llTaAp~~~~~d~~~~~~l~~~~~D~invq~Yd~ 212 (300)
+.+.|-|-|=|-+|.. .+...+++.+|+. |.+.=|+.-|..|. ..+...+ ..+|+|.+|.-+.
T Consensus 76 ~~~~g~~~i~~H~E~~--~~~~~~i~~ik~~---g~k~GialnP~T~~--~~~~~~l--~~vD~VlvMsV~P 138 (201)
T PF00834_consen 76 FAEAGADYITFHAEAT--EDPKETIKYIKEA---GIKAGIALNPETPV--EELEPYL--DQVDMVLVMSVEP 138 (201)
T ss_dssp HHHHT-SEEEEEGGGT--TTHHHHHHHHHHT---TSEEEEEE-TTS-G--GGGTTTG--CCSSEEEEESS-T
T ss_pred HHhcCCCEEEEcccch--hCHHHHHHHHHHh---CCCEEEEEECCCCc--hHHHHHh--hhcCEEEEEEecC
Confidence 3467889999999943 4566777777775 56666888887653 2233444 6899999999874
No 130
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=23.26 E-value=1.1e+02 Score=29.03 Aligned_cols=68 Identities=19% Similarity=0.178 Sum_probs=39.8
Q ss_pred EEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc-----------ccH--HHHHHHHHH
Q 043511 104 SLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST-----------LHW--DDLARFLSA 170 (300)
Q Consensus 104 SiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~-----------~~~--~~l~~~Lr~ 170 (300)
|+|=|.......+.++-..+++.+.+ .+.-+|+|-||+++-.. .+. ..|+++|++
T Consensus 10 alG~~~s~~~y~~~~~v~~~~~~~r~------------~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~ 77 (339)
T cd06602 10 ALGFHLCRWGYKNVDEVKEVVENMRA------------AGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHA 77 (339)
T ss_pred HhhhHhcCCCCCCHHHHHHHHHHHHH------------hCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHH
Confidence 45555444445566666777766543 24557888887765421 234 677777665
Q ss_pred hhcCCCceEEEeCCCC
Q 043511 171 YSSRGKKVYLTAAPQC 186 (300)
Q Consensus 171 ~~~~g~~~llTaAp~~ 186 (300)
+|-+.++..-|..
T Consensus 78 ---~G~k~~~~i~P~v 90 (339)
T cd06602 78 ---NGQHYVPILDPAI 90 (339)
T ss_pred ---CCCEEEEEEeCcc
Confidence 3666666665543
No 131
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.74 E-value=1.1e+02 Score=23.85 Aligned_cols=63 Identities=11% Similarity=0.199 Sum_probs=37.2
Q ss_pred CCcEEEEeCCCCCCccccccccCCCccEEEEceeeecCCCCcceeecCCCCCCCCCChhhHHHHHHHHhhCCc-eEEEEE
Q 043511 27 AGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGI-KVMLSL 105 (300)
Q Consensus 27 ~~~vv~Ywg~~~~~~~l~~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~-KVLlSi 105 (300)
..++ .|.|..-....+.+.+.....++|.+|+.... ....+.+.++.+|+.+. ++.+-+
T Consensus 27 G~~V-~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~-------------------~~~~~~~~i~~l~~~~~~~~~i~v 86 (119)
T cd02067 27 GFEV-IDLGVDVPPEEIVEAAKEEDADAIGLSGLLTT-------------------HMTLMKEVIEELKEAGLDDIPVLV 86 (119)
T ss_pred CCEE-EECCCCCCHHHHHHHHHHcCCCEEEEeccccc-------------------cHHHHHHHHHHHHHcCCCCCeEEE
Confidence 3444 66665433334555566778899998765321 12344455566665565 788888
Q ss_pred cCCC
Q 043511 106 GGGV 109 (300)
Q Consensus 106 GG~~ 109 (300)
||..
T Consensus 87 GG~~ 90 (119)
T cd02067 87 GGAI 90 (119)
T ss_pred ECCC
Confidence 8974
No 132
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=22.34 E-value=1e+02 Score=26.87 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHhhCCc--eEEEEEcCC
Q 043511 84 CRVVSDAIKSCQSRGI--KVMLSLGGG 108 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~--KVLlSiGG~ 108 (300)
...+.+.|+.+++.|. +|.+-+||.
T Consensus 149 ~~~~~~~i~~l~~~~~~~~v~i~vGG~ 175 (197)
T TIGR02370 149 MYGQKDINDKLKEEGYRDSVKFMVGGA 175 (197)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECh
Confidence 3566778888887754 488889996
No 133
>KOG1686 consensus Mitochondrial/chloroplast ribosomal L21 protein [Translation, ribosomal structure and biogenesis]
Probab=22.22 E-value=36 Score=28.43 Aligned_cols=39 Identities=21% Similarity=0.143 Sum_probs=29.4
Q ss_pred CCCCcChHHHHHHHhHhhhcCCCCceEEEeeccccCCCC
Q 043511 253 GSGYIPPNVLTSQVLPQIKTSPKYGGVMLWSKFFDDQNG 291 (300)
Q Consensus 253 ~~Gyv~~~~l~~~~~~~~~~~~~~gGvm~W~~~~d~~~~ 291 (300)
..+|+....+.+.+...++..+.|+=||+|+.+|-.++|
T Consensus 4 ~~e~v~vg~l~s~~~~~~kr~~~favv~v~srq~kvs~g 42 (151)
T KOG1686|consen 4 SSETVTVGRLASACSHSIKRPSGFAVVSVGSRQRKVSSG 42 (151)
T ss_pred cceeEEEeccchhhhhccccCCccEEEEEcceeEEecCC
Confidence 456666666666665566677889999999999887776
No 134
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=21.92 E-value=6.5e+02 Score=23.39 Aligned_cols=113 Identities=17% Similarity=0.178 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHhhCCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCcccHHH
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDD 163 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~~~~~~ 163 (300)
...+.+.|+.+-..|++=++ +.|.+|.+...+.++|+++++.+.+...+ |. -.+=|+ +..+...
T Consensus 28 ~~~l~~lv~~li~~Gv~Gi~-v~GstGE~~~Lt~eEr~~v~~~~~~~~~g-----rv---pvi~Gv-------~~~~t~~ 91 (309)
T cd00952 28 LDETARLVERLIAAGVDGIL-TMGTFGECATLTWEEKQAFVATVVETVAG-----RV---PVFVGA-------TTLNTRD 91 (309)
T ss_pred HHHHHHHHHHHHHcCCCEEE-ECcccccchhCCHHHHHHHHHHHHHHhCC-----CC---CEEEEe-------ccCCHHH
Confidence 56777888887788999777 55666666666788899998877652210 00 001110 1234556
Q ss_pred HHHHHHHhhcCCCceEEEeCCCCCCCc--c---hhhhhhhcCCCceEEeeecCCCC
Q 043511 164 LARFLSAYSSRGKKVYLTAAPQCPFPD--R---FLGAALNTGLFDYVWVQFYNNPP 214 (300)
Q Consensus 164 l~~~Lr~~~~~g~~~llTaAp~~~~~d--~---~~~~~l~~~~~D~invq~Yd~~~ 214 (300)
-++..|...+.|-+-++.++|.-.-++ . ++.... +..+=+-|+.||.+.
T Consensus 92 ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va--~a~~~lPv~iYn~P~ 145 (309)
T cd00952 92 TIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVA--EAVPEMAIAIYANPE 145 (309)
T ss_pred HHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHH--HhCCCCcEEEEcCch
Confidence 666666655557666777777521121 1 222221 334226778999874
No 135
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=21.53 E-value=3.2e+02 Score=25.70 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHhhCCceEEEEE------------------------------------cCCCCCcCccChhhHHHHHHH
Q 043511 83 GCRVVSDAIKSCQSRGIKVMLSL------------------------------------GGGVGSYSLASVADAKNVADY 126 (300)
Q Consensus 83 ~~~~~~~~Ik~~q~~g~KVLlSi------------------------------------GG~~g~~~~~s~~~~~~fa~~ 126 (300)
..++..+.|+.+|++|+||++.+ -|..+-..|.+++.++-|.+.
T Consensus 62 ~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 141 (339)
T cd06604 62 RFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSL 141 (339)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHH
Q ss_pred HHHhhcCCCCCcccccccccceeeeeccCCC
Q 043511 127 LWNNFLGGTSSSRPLGAAVLDGIDFDIEQGS 157 (300)
Q Consensus 127 l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~ 157 (300)
+.+ +.+.|+||+=+|.-.|.
T Consensus 142 ~~~-----------~~~~Gvdg~w~D~~Ep~ 161 (339)
T cd06604 142 YKK-----------FVDLGVDGIWNDMNEPA 161 (339)
T ss_pred HHH-----------HhhCCCceEeecCCCcc
No 136
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=21.30 E-value=4.4e+02 Score=25.57 Aligned_cols=69 Identities=9% Similarity=0.034 Sum_probs=40.2
Q ss_pred CCceEEEEEcCCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc-----------ccHHHHH
Q 043511 97 RGIKVMLSLGGGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST-----------LHWDDLA 165 (300)
Q Consensus 97 ~g~KVLlSiGG~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~-----------~~~~~l~ 165 (300)
+.+.|++||.|.. +.+.+++.+ +.+++.+.|+|||++-.|.. ++...+.
T Consensus 98 ~~~p~i~si~g~~---------~~~~~~~~a-----------~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~ 157 (420)
T PRK08318 98 PDRALIASIMVEC---------NEEEWKEIA-----------PLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVE 157 (420)
T ss_pred CCceEEEEeccCC---------CHHHHHHHH-----------HHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHH
Confidence 3577899998741 123444433 23466789999999998751 3444555
Q ss_pred HHHHHhhcC-CCceEEEeCCC
Q 043511 166 RFLSAYSSR-GKKVYLTAAPQ 185 (300)
Q Consensus 166 ~~Lr~~~~~-g~~~llTaAp~ 185 (300)
+.+++.++. ...+.+-+.|.
T Consensus 158 ~i~~~v~~~~~~Pv~vKl~p~ 178 (420)
T PRK08318 158 MYTRWVKRGSRLPVIVKLTPN 178 (420)
T ss_pred HHHHHHHhccCCcEEEEcCCC
Confidence 555555432 23455555553
No 137
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=21.23 E-value=2.6e+02 Score=26.51 Aligned_cols=62 Identities=13% Similarity=0.025 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHhhCCceEEEEE------c-CCCCC---cCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeec
Q 043511 84 CRVVSDAIKSCQSRGIKVMLSL------G-GGVGS---YSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDI 153 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~KVLlSi------G-G~~g~---~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~ 153 (300)
++...+.++.+|++|+|+++.+ | +|.+. ..|.+++.|+-+.+.+. .+.+.|+||+=+|.
T Consensus 63 FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~-----------~l~~~Gv~~~W~Dm 131 (332)
T cd06601 63 FPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYK-----------YLFDIGLEFVWQDM 131 (332)
T ss_pred CCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHH-----------HHHhCCCceeecCC
Confidence 5566788888899999988755 1 22222 24556666665554432 24456888887776
Q ss_pred cCC
Q 043511 154 EQG 156 (300)
Q Consensus 154 E~p 156 (300)
-.|
T Consensus 132 nEp 134 (332)
T cd06601 132 TTP 134 (332)
T ss_pred CCc
Confidence 443
No 138
>PLN00196 alpha-amylase; Provisional
Probab=21.22 E-value=89 Score=30.86 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=21.2
Q ss_pred CCChhhHHHHHHHHhhCCceEEEEE
Q 043511 81 AGGCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 81 ~~~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
-++..++.+.|++||++|+||++=+
T Consensus 88 fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 88 YGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3567899999999999999998753
No 139
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=21.12 E-value=1.9e+02 Score=28.23 Aligned_cols=75 Identities=23% Similarity=0.244 Sum_probs=39.8
Q ss_pred HHHHHHHhhCCceEEEEEcCC-------CC--------CcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeee
Q 043511 88 SDAIKSCQSRGIKVMLSLGGG-------VG--------SYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFD 152 (300)
Q Consensus 88 ~~~Ik~~q~~g~KVLlSiGG~-------~g--------~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD 152 (300)
.-.+++++++|+..++.+-=. +| ...+ .+...++||++|.+ .++.+.=.||.|+
T Consensus 107 rwfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NL-k~d~y~~FA~YLa~----------Vv~~~~~~GI~f~ 175 (384)
T PF14587_consen 107 RWFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNL-KPDNYDAFADYLAD----------VVKHYKKWGINFD 175 (384)
T ss_dssp HHHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS--TT-HHHHHHHHHH----------HHHHHHCTT--EE
T ss_pred HHHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCcccccc-ChhHHHHHHHHHHH----------HHHHHHhcCCccc
Confidence 346788889999999876421 01 1112 24568999999986 3344444577776
Q ss_pred ccCCCc------------------ccHHHHHHHHHHhhc
Q 043511 153 IEQGST------------------LHWDDLARFLSAYSS 173 (300)
Q Consensus 153 ~E~p~~------------------~~~~~l~~~Lr~~~~ 173 (300)
+=.|-+ +....|++.|+..++
T Consensus 176 ~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~ 214 (384)
T PF14587_consen 176 YISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALK 214 (384)
T ss_dssp EEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHH
T ss_pred eeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 544421 245678888877553
No 140
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=20.66 E-value=1.1e+02 Score=26.56 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHhhCCc--eEEEEEcCCC
Q 043511 84 CRVVSDAIKSCQSRGI--KVMLSLGGGV 109 (300)
Q Consensus 84 ~~~~~~~Ik~~q~~g~--KVLlSiGG~~ 109 (300)
...+.+.|+.+|+.+. ++-+-+||..
T Consensus 147 ~~~~~~~i~~lr~~~~~~~~~i~vGG~~ 174 (201)
T cd02070 147 MGGMKEVIEALKEAGLRDKVKVMVGGAP 174 (201)
T ss_pred HHHHHHHHHHHHHCCCCcCCeEEEECCc
Confidence 4566677777777665 7888889973
No 141
>PLN02229 alpha-galactosidase
Probab=20.46 E-value=4.7e+02 Score=25.97 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=45.5
Q ss_pred hHHHHHHHHhhCCceEEE--EEc-----CCCCCcCccChhhHHHHHHHHHHhhcCCCCCcccccccccceeeeeccCCCc
Q 043511 86 VVSDAIKSCQSRGIKVML--SLG-----GGVGSYSLASVADAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGST 158 (300)
Q Consensus 86 ~~~~~Ik~~q~~g~KVLl--SiG-----G~~g~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~~DGiDiD~E~p~~ 158 (300)
.++...+..|++|+|.=| +-| |..|++.. ...+++.|| ++|+|-+-+|+=+...
T Consensus 129 G~k~ladyiH~~GlKfGIy~d~G~~TC~~~pGS~g~-e~~DA~~fA------------------~WGVDylK~D~C~~~~ 189 (427)
T PLN02229 129 GIKLLADYVHSKGLKLGIYSDAGVFTCQVRPGSLFH-EVDDADIFA------------------SWGVDYLKYDNCYNLG 189 (427)
T ss_pred cHHHHHHHHHHCCCceEEeccCCCcccCCCCCCccH-HHHHHHHHH------------------HcCCCEEEecCCCCCC
Confidence 366777778999999533 222 22233322 134455555 4588888888875532
Q ss_pred ----ccHHHHHHHHHHhhcCCCceEEEeCC
Q 043511 159 ----LHWDDLARFLSAYSSRGKKVYLTAAP 184 (300)
Q Consensus 159 ----~~~~~l~~~Lr~~~~~g~~~llTaAp 184 (300)
+.|..|-++|+. .|+..+++.-+
T Consensus 190 ~~~~~~y~~m~~AL~~---tGRpI~~SlC~ 216 (427)
T PLN02229 190 IKPIERYPPMRDALNA---TGRSIFYSLCE 216 (427)
T ss_pred cchhHHHHHHHHHHHh---hCCCcEEEecC
Confidence 346666655544 36777777644
No 142
>PLN02361 alpha-amylase
Probab=20.29 E-value=1.1e+02 Score=30.00 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=33.5
Q ss_pred ccCCCccEEEEceeeec-CCCCcceeecCCCCCCCCCChhhHHHHHHHHhhCCceEEEEE
Q 043511 47 CATGKYAYVNIAFLNKF-GNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMLSL 105 (300)
Q Consensus 47 ~~~~~~thii~aF~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~KVLlSi 105 (300)
+..-++|+|-+.=+... ..-++...++-.. ++.-++..++.+.|++||++|+||++=+
T Consensus 38 l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~-~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 38 LAKSGFTSAWLPPPSQSLAPEGYLPQNLYSL-NSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHcCCCEEEeCCCCcCCCCCCCCccccccc-CcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 34567888776521111 1111222222211 2333567899999999999999999844
No 143
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=20.21 E-value=1e+02 Score=24.40 Aligned_cols=59 Identities=14% Similarity=0.208 Sum_probs=36.4
Q ss_pred EEEeCCCCCCccccccccCCCccEEEEceeeecCCCCcceeecCCCCCCCCCChhhHHHHHHHHhhCCc-eEEEEEcCC
Q 043511 31 AIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGI-KVMLSLGGG 108 (300)
Q Consensus 31 v~Ywg~~~~~~~l~~~~~~~~~thii~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ik~~q~~g~-KVLlSiGG~ 108 (300)
+.|-|..-....+.+.......++|.+|+.... ....+.+.++.+++.+. ++.+-+||.
T Consensus 30 vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~-------------------~~~~~~~~~~~L~~~~~~~i~i~~GG~ 89 (122)
T cd02071 30 VIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGG-------------------HMTLFPEVIELLRELGAGDILVVGGGI 89 (122)
T ss_pred EEECCCCCCHHHHHHHHHHcCCCEEEEcccchh-------------------hHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 466665532223444445678999999876421 12344566677776655 788888986
Done!