BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043512
         (487 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
 pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
          Length = 784

 Score = 32.3 bits (72), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 271 LHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN---LHFSPPISIPERKLQ 327
           + L   ++ I Y  +  ++ +T G  Y+ Q  +V  PL  L    + F+PP+S  E+K++
Sbjct: 554 IQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLS--EKKMK 611


>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
 pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
           P3221
 pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
 pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
 pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
 pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
 pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
 pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
 pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
           P21
          Length = 776

 Score = 32.3 bits (72), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 271 LHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN---LHFSPPISIPERKLQ 327
           + L   ++ I Y  +  ++ +T G  Y+ Q  +V  PL  L    + F+PP+S  E+K++
Sbjct: 546 IQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLS--EKKMK 603


>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
           C2221 At 2.13a
 pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
 pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
           At 2.9a
 pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
           At 2.9a
          Length = 796

 Score = 32.3 bits (72), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 271 LHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN---LHFSPPISIPERKLQ 327
           + L   ++ I Y  +  ++ +T G  Y+ Q  +V  PL  L    + F+PP+S  E+K++
Sbjct: 566 IQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLS--EKKMK 623


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,016,526
Number of Sequences: 62578
Number of extensions: 500811
Number of successful extensions: 1095
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1095
Number of HSP's gapped (non-prelim): 5
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)