Query 043512
Match_columns 487
No_of_seqs 337 out of 2467
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:47:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07156 Prenylcys_lyase: Pren 100.0 6.8E-48 1.5E-52 374.3 30.6 328 139-468 7-354 (368)
2 TIGR02734 crtI_fam phytoene de 100.0 3.3E-31 7.1E-36 275.2 27.0 382 24-466 1-406 (502)
3 COG1233 Phytoene dehydrogenase 100.0 4.9E-28 1.1E-32 248.3 27.7 320 20-400 2-339 (487)
4 PRK12416 protoporphyrinogen ox 100.0 2.8E-27 6E-32 243.5 28.9 399 22-463 2-462 (463)
5 TIGR02733 desat_CrtD C-3',4' d 100.0 8.4E-27 1.8E-31 241.5 29.1 300 21-348 1-331 (492)
6 PLN02268 probable polyamine ox 100.0 1E-26 2.2E-31 237.4 26.7 249 22-321 1-266 (435)
7 PLN02529 lysine-specific histo 100.0 6.4E-26 1.4E-30 238.0 31.1 246 18-321 157-421 (738)
8 PRK11883 protoporphyrinogen ox 100.0 3.5E-26 7.6E-31 235.0 27.0 251 22-312 1-277 (451)
9 TIGR02730 carot_isom carotene 99.9 3E-25 6.4E-30 229.6 31.9 298 22-348 1-324 (493)
10 TIGR00562 proto_IX_ox protopor 99.9 7.9E-26 1.7E-30 232.9 25.8 242 21-311 2-280 (462)
11 PLN02576 protoporphyrinogen ox 99.9 1.3E-25 2.8E-30 233.1 26.6 250 16-312 7-299 (496)
12 PRK07233 hypothetical protein; 99.9 4.6E-25 1E-29 225.5 28.6 243 23-312 1-256 (434)
13 PLN03000 amine oxidase 99.9 1.3E-24 2.9E-29 228.6 32.4 392 18-468 181-629 (881)
14 PLN02676 polyamine oxidase 99.9 3.3E-25 7.1E-30 227.0 26.5 252 18-322 23-301 (487)
15 PLN02568 polyamine oxidase 99.9 3.6E-25 7.9E-30 228.2 23.6 271 21-322 5-315 (539)
16 PLN02328 lysine-specific histo 99.9 5.2E-24 1.1E-28 224.5 28.8 247 19-321 236-501 (808)
17 COG1232 HemY Protoporphyrinoge 99.9 4.6E-24 9.9E-29 211.0 24.5 248 22-315 1-273 (444)
18 KOG0685 Flavin-containing amin 99.9 2.9E-24 6.2E-29 206.7 20.2 286 17-353 17-329 (498)
19 PLN02612 phytoene desaturase 99.9 2.1E-22 4.6E-27 210.1 31.8 263 20-312 92-368 (567)
20 PLN02976 amine oxidase 99.9 1E-22 2.2E-27 219.6 28.9 413 21-464 693-1188(1713)
21 COG1231 Monoamine oxidase [Ami 99.9 7.7E-24 1.7E-28 204.2 17.0 394 19-463 5-448 (450)
22 TIGR02731 phytoene_desat phyto 99.9 2.4E-22 5.2E-27 206.2 26.0 256 23-311 1-277 (453)
23 TIGR02732 zeta_caro_desat caro 99.9 1.4E-21 3E-26 200.2 29.6 265 23-313 1-287 (474)
24 KOG0029 Amine oxidase [Seconda 99.9 2.8E-22 6.2E-27 203.1 22.0 265 17-322 11-286 (501)
25 PLN02487 zeta-carotene desatur 99.9 8E-21 1.7E-25 196.0 32.2 267 20-318 74-367 (569)
26 PRK07208 hypothetical protein; 99.9 1.1E-21 2.4E-26 202.9 23.7 248 20-317 3-287 (479)
27 COG2907 Predicted NAD/FAD-bind 99.9 3.2E-21 7E-26 177.8 20.4 257 16-312 3-275 (447)
28 TIGR03467 HpnE squalene-associ 99.9 3.2E-19 6.9E-24 181.6 27.4 239 35-312 1-256 (419)
29 PF01593 Amino_oxidase: Flavin 99.8 1.8E-19 3.9E-24 184.0 18.3 65 31-100 1-67 (450)
30 COG3380 Predicted NAD/FAD-depe 99.8 1.2E-19 2.6E-24 162.3 12.9 165 22-317 2-167 (331)
31 PTZ00363 rab-GDP dissociation 99.8 4.1E-18 9E-23 171.2 22.1 251 19-309 2-289 (443)
32 KOG4254 Phytoene desaturase [C 99.8 1.2E-17 2.6E-22 159.2 16.3 73 247-319 254-330 (561)
33 PF13450 NAD_binding_8: NAD(P) 99.6 7.3E-16 1.6E-20 113.0 7.4 66 26-96 1-68 (68)
34 PRK13977 myosin-cross-reactive 99.6 2.1E-14 4.5E-19 145.9 19.0 79 16-96 17-97 (576)
35 COG3349 Uncharacterized conser 99.6 4.9E-14 1.1E-18 139.3 15.2 256 22-309 1-277 (485)
36 TIGR00031 UDP-GALP_mutase UDP- 99.5 6E-13 1.3E-17 130.9 18.2 235 22-310 2-247 (377)
37 COG2081 Predicted flavoprotein 99.5 3.2E-13 6.9E-18 129.0 13.0 61 247-307 100-164 (408)
38 KOG1276 Protoporphyrinogen oxi 99.5 6.5E-13 1.4E-17 126.8 14.6 250 17-310 7-309 (491)
39 PF03486 HI0933_like: HI0933-l 99.4 3.5E-12 7.6E-17 127.2 14.5 63 247-309 98-165 (409)
40 PF01266 DAO: FAD dependent ox 99.4 2.7E-12 6E-17 127.4 10.8 64 248-312 135-205 (358)
41 PRK12409 D-amino acid dehydrog 99.4 2.3E-11 4.9E-16 123.5 17.1 64 248-311 185-259 (410)
42 KOG2820 FAD-dependent oxidored 99.3 9.5E-11 2.1E-15 108.8 19.1 88 259-348 158-251 (399)
43 COG0579 Predicted dehydrogenas 99.3 2.1E-11 4.6E-16 120.4 14.0 66 248-313 141-214 (429)
44 PRK11728 hydroxyglutarate oxid 99.3 2E-11 4.4E-16 123.0 14.2 63 248-311 137-205 (393)
45 TIGR03329 Phn_aa_oxid putative 99.3 2.1E-11 4.6E-16 125.3 14.0 62 248-311 171-238 (460)
46 TIGR01377 soxA_mon sarcosine o 99.3 8.7E-11 1.9E-15 118.0 17.1 54 257-311 145-201 (380)
47 COG0562 Glf UDP-galactopyranos 99.3 1.1E-10 2.4E-15 107.8 14.4 229 21-310 1-241 (374)
48 PRK01747 mnmC bifunctional tRN 99.2 2.6E-10 5.7E-15 122.3 17.1 66 247-312 395-465 (662)
49 PRK00711 D-amino acid dehydrog 99.2 3.3E-10 7.1E-15 115.2 16.4 63 248-311 189-258 (416)
50 COG1635 THI4 Ribulose 1,5-bisp 99.2 3.1E-10 6.7E-15 99.4 13.6 42 20-66 29-70 (262)
51 PF00996 GDI: GDP dissociation 99.2 1.2E-09 2.7E-14 108.8 19.6 247 19-306 2-285 (438)
52 PTZ00383 malate:quinone oxidor 99.2 3.7E-10 8.1E-15 115.6 16.3 54 257-311 211-274 (497)
53 PRK11259 solA N-methyltryptoph 99.2 2.4E-10 5.3E-15 114.6 14.8 54 258-312 150-206 (376)
54 PRK06847 hypothetical protein; 99.2 4.6E-10 1E-14 112.5 15.1 47 265-311 118-164 (375)
55 PRK07364 2-octaprenyl-6-methox 99.2 6.1E-10 1.3E-14 113.3 16.0 41 16-61 13-53 (415)
56 PRK07588 hypothetical protein; 99.2 5.5E-10 1.2E-14 112.6 15.3 44 268-311 116-159 (391)
57 PRK08773 2-octaprenyl-3-methyl 99.2 1.5E-09 3.2E-14 109.5 17.7 46 265-310 124-169 (392)
58 TIGR01988 Ubi-OHases Ubiquinon 99.1 6.9E-10 1.5E-14 111.7 15.0 46 266-311 118-164 (385)
59 PRK13339 malate:quinone oxidor 99.1 3.5E-10 7.7E-15 115.3 12.7 44 20-66 5-48 (497)
60 PLN02172 flavin-containing mon 99.1 9.5E-10 2.1E-14 112.1 15.4 44 18-66 7-50 (461)
61 PRK07236 hypothetical protein; 99.1 2.2E-09 4.9E-14 107.9 17.7 44 268-311 112-155 (386)
62 PRK08163 salicylate hydroxylas 99.1 1.6E-09 3.5E-14 109.5 16.7 44 268-311 124-167 (396)
63 TIGR01320 mal_quin_oxido malat 99.1 6.7E-10 1.4E-14 114.0 13.7 65 248-312 166-242 (483)
64 PRK08013 oxidoreductase; Provi 99.1 1.9E-09 4.1E-14 109.0 16.4 44 268-311 126-169 (400)
65 PRK05257 malate:quinone oxidor 99.1 1.3E-09 2.9E-14 112.0 14.9 45 19-66 3-47 (494)
66 TIGR03364 HpnW_proposed FAD de 99.1 9.2E-10 2E-14 109.9 13.3 34 22-60 1-34 (365)
67 TIGR01373 soxB sarcosine oxida 99.1 1.5E-09 3.3E-14 110.0 15.0 53 258-311 184-241 (407)
68 COG0654 UbiH 2-polyprenyl-6-me 99.1 3.4E-09 7.4E-14 106.5 17.1 44 268-311 119-163 (387)
69 PRK05714 2-octaprenyl-3-methyl 99.1 1E-09 2.2E-14 111.3 13.4 46 266-311 124-169 (405)
70 PRK07333 2-octaprenyl-6-methox 99.1 3.4E-09 7.5E-14 107.3 17.2 47 265-311 122-168 (403)
71 PRK09126 hypothetical protein; 99.1 1.2E-09 2.6E-14 110.2 13.7 51 261-311 118-168 (392)
72 PRK06753 hypothetical protein; 99.1 2.2E-09 4.7E-14 107.6 15.4 44 268-311 110-153 (373)
73 PRK05868 hypothetical protein; 99.1 3.3E-09 7.2E-14 105.9 16.5 45 267-311 117-161 (372)
74 COG0644 FixC Dehydrogenases (f 99.1 3.2E-09 7E-14 106.9 16.1 42 20-66 2-43 (396)
75 PRK10157 putative oxidoreducta 99.1 2.3E-09 4.9E-14 109.0 15.0 54 257-310 111-164 (428)
76 TIGR01984 UbiH 2-polyprenyl-6- 99.1 4.1E-09 8.9E-14 105.9 16.7 44 267-310 119-162 (382)
77 PRK04176 ribulose-1,5-biphosph 99.1 2.9E-09 6.2E-14 100.1 14.0 42 19-65 23-64 (257)
78 PF13738 Pyr_redox_3: Pyridine 99.1 4.7E-10 1E-14 102.2 8.5 52 259-310 87-138 (203)
79 PRK11101 glpA sn-glycerol-3-ph 99.0 2.7E-09 5.9E-14 111.6 14.5 56 257-312 149-213 (546)
80 PRK07608 ubiquinone biosynthes 99.0 6.2E-09 1.3E-13 104.9 16.6 45 266-311 123-168 (388)
81 PRK06184 hypothetical protein; 99.0 3.4E-09 7.4E-14 110.3 15.0 48 264-311 119-169 (502)
82 TIGR02032 GG-red-SF geranylger 99.0 4.8E-09 1E-13 101.3 15.0 48 263-310 100-148 (295)
83 PRK08020 ubiF 2-octaprenyl-3-m 99.0 1.1E-08 2.4E-13 103.1 17.5 44 268-311 127-170 (391)
84 TIGR00292 thiazole biosynthesi 99.0 7.9E-09 1.7E-13 96.9 15.1 41 20-65 20-60 (254)
85 PRK06475 salicylate hydroxylas 99.0 5.2E-09 1.1E-13 105.8 15.0 45 267-311 121-168 (400)
86 PRK05732 2-octaprenyl-6-methox 99.0 5.4E-09 1.2E-13 105.5 14.9 46 266-311 125-170 (395)
87 PRK07494 2-octaprenyl-6-methox 99.0 6.8E-09 1.5E-13 104.6 15.5 46 266-311 123-168 (388)
88 PRK12266 glpD glycerol-3-phosp 99.0 4.5E-09 9.8E-14 109.1 14.6 56 257-312 155-218 (508)
89 TIGR03219 salicylate_mono sali 99.0 5.6E-09 1.2E-13 106.1 14.7 54 258-311 106-160 (414)
90 PLN02463 lycopene beta cyclase 99.0 1E-07 2.2E-12 96.7 23.5 44 266-310 126-169 (447)
91 PRK08850 2-octaprenyl-6-methox 99.0 1.9E-08 4E-13 101.9 18.0 45 267-311 125-169 (405)
92 PRK08274 tricarballylate dehyd 99.0 9.6E-09 2.1E-13 106.0 15.9 41 19-64 2-44 (466)
93 PRK08243 4-hydroxybenzoate 3-m 99.0 1.2E-08 2.6E-13 102.9 16.1 61 21-101 2-64 (392)
94 PRK06834 hypothetical protein; 99.0 7E-09 1.5E-13 107.0 14.7 48 264-311 110-157 (488)
95 PRK07190 hypothetical protein; 99.0 5E-09 1.1E-13 108.0 13.5 47 264-310 119-165 (487)
96 PRK07045 putative monooxygenas 99.0 8.6E-09 1.9E-13 103.8 14.9 46 266-311 119-166 (388)
97 PRK12845 3-ketosteroid-delta-1 99.0 4.3E-08 9.3E-13 102.6 19.9 45 16-66 11-55 (564)
98 PRK08849 2-octaprenyl-3-methyl 99.0 1.9E-08 4.2E-13 101.0 16.6 46 266-311 123-168 (384)
99 KOG2844 Dimethylglycine dehydr 99.0 2.9E-09 6.4E-14 107.0 10.2 82 246-328 173-261 (856)
100 PRK06183 mhpA 3-(3-hydroxyphen 99.0 3E-08 6.5E-13 104.1 18.2 45 267-311 127-175 (538)
101 PRK06481 fumarate reductase fl 99.0 2.7E-08 5.8E-13 103.3 17.5 43 18-65 58-100 (506)
102 PRK08244 hypothetical protein; 98.9 8.5E-09 1.8E-13 107.2 13.5 55 257-311 103-160 (493)
103 PRK10015 oxidoreductase; Provi 98.9 3E-08 6.5E-13 100.8 17.1 39 20-63 4-42 (429)
104 COG0665 DadA Glycine/D-amino a 98.9 9.5E-09 2.1E-13 103.4 13.4 63 248-311 144-213 (387)
105 PRK06617 2-octaprenyl-6-methox 98.9 2.4E-08 5.2E-13 100.0 16.0 43 268-311 119-161 (374)
106 PRK07538 hypothetical protein; 98.9 2E-08 4.3E-13 102.0 15.5 35 22-61 1-35 (413)
107 TIGR00275 flavoprotein, HI0933 98.9 4.5E-09 9.7E-14 105.9 10.5 54 256-310 104-160 (400)
108 PRK07121 hypothetical protein; 98.9 6.6E-08 1.4E-12 100.4 19.3 43 19-66 18-60 (492)
109 TIGR02360 pbenz_hydroxyl 4-hyd 98.9 3.2E-08 6.9E-13 99.6 16.2 63 20-100 1-63 (390)
110 PLN02661 Putative thiazole syn 98.9 3.8E-08 8.3E-13 94.9 15.5 42 20-66 91-133 (357)
111 PRK13369 glycerol-3-phosphate 98.9 3.8E-08 8.3E-13 102.2 15.4 56 257-312 155-217 (502)
112 PRK12842 putative succinate de 98.9 3.2E-07 6.9E-12 96.9 22.1 43 19-66 7-49 (574)
113 PRK06185 hypothetical protein; 98.8 7E-08 1.5E-12 97.9 15.8 36 20-60 5-40 (407)
114 PRK06996 hypothetical protein; 98.8 1.7E-07 3.6E-12 94.7 17.6 45 264-308 125-172 (398)
115 PF05834 Lycopene_cycl: Lycope 98.8 2.1E-06 4.5E-11 85.8 25.3 42 268-309 100-141 (374)
116 PRK08132 FAD-dependent oxidore 98.8 1.4E-07 3.1E-12 99.3 17.6 42 15-61 17-58 (547)
117 COG2072 TrkA Predicted flavopr 98.8 2.9E-08 6.4E-13 100.8 11.9 47 17-68 4-51 (443)
118 KOG1399 Flavin-containing mono 98.8 3.2E-08 6.8E-13 99.4 11.6 43 19-66 4-46 (448)
119 PRK06134 putative FAD-binding 98.8 8.9E-07 1.9E-11 93.6 23.0 46 16-66 7-52 (581)
120 TIGR01292 TRX_reduct thioredox 98.8 4.7E-08 1E-12 94.7 12.5 45 265-310 68-112 (300)
121 PF01494 FAD_binding_3: FAD bi 98.8 1.7E-08 3.6E-13 100.1 9.0 49 263-311 120-173 (356)
122 PF00890 FAD_binding_2: FAD bi 98.8 6.8E-08 1.5E-12 98.3 13.2 56 256-311 140-204 (417)
123 TIGR01813 flavo_cyto_c flavocy 98.8 2.2E-07 4.7E-12 95.2 16.7 38 23-65 1-39 (439)
124 PRK06175 L-aspartate oxidase; 98.8 1.2E-07 2.7E-12 96.4 14.6 38 20-63 3-40 (433)
125 PLN02464 glycerol-3-phosphate 98.8 2.8E-07 6.2E-12 97.8 17.6 40 19-63 69-108 (627)
126 TIGR01989 COQ6 Ubiquinone bios 98.8 1.4E-07 3.1E-12 96.4 14.8 44 268-311 134-184 (437)
127 PRK07573 sdhA succinate dehydr 98.8 2.3E-07 5E-12 98.7 16.5 39 20-63 34-72 (640)
128 PLN02927 antheraxanthin epoxid 98.8 7E-08 1.5E-12 101.4 12.4 55 257-311 194-249 (668)
129 PRK12837 3-ketosteroid-delta-1 98.7 6.2E-07 1.3E-11 93.4 19.0 44 16-65 2-45 (513)
130 TIGR02023 BchP-ChlP geranylger 98.7 1.3E-07 2.9E-12 95.1 13.5 32 22-58 1-32 (388)
131 PRK05192 tRNA uridine 5-carbox 98.7 1.1E-07 2.5E-12 98.2 12.7 39 20-63 3-42 (618)
132 PLN02697 lycopene epsilon cycl 98.7 1.9E-07 4.2E-12 96.3 14.3 45 266-311 204-249 (529)
133 PRK12843 putative FAD-binding 98.7 6.4E-07 1.4E-11 94.6 18.4 52 10-66 3-56 (578)
134 PF01946 Thi4: Thi4 family; PD 98.7 8.5E-09 1.8E-13 91.2 3.4 42 20-66 16-57 (230)
135 PRK11445 putative oxidoreducta 98.7 2.4E-07 5.2E-12 91.9 13.7 45 267-311 111-158 (351)
136 KOG2853 Possible oxidoreductas 98.7 5.2E-06 1.1E-10 77.8 21.2 40 20-60 85-124 (509)
137 TIGR01789 lycopene_cycl lycope 98.7 2.3E-06 4.9E-11 85.3 20.6 36 23-63 1-38 (370)
138 PLN02985 squalene monooxygenas 98.7 1E-06 2.2E-11 91.4 18.7 40 16-60 38-77 (514)
139 PRK06126 hypothetical protein; 98.7 9E-08 1.9E-12 100.8 11.1 45 267-311 140-189 (545)
140 PRK06452 sdhA succinate dehydr 98.7 4E-07 8.6E-12 95.8 15.7 39 20-63 4-42 (566)
141 PRK09078 sdhA succinate dehydr 98.7 6.1E-07 1.3E-11 95.0 17.0 45 14-63 5-49 (598)
142 TIGR01812 sdhA_frdA_Gneg succi 98.7 6.1E-07 1.3E-11 94.8 16.7 37 23-64 1-37 (566)
143 PRK12844 3-ketosteroid-delta-1 98.7 1E-06 2.2E-11 92.5 18.2 42 19-65 4-45 (557)
144 PRK08958 sdhA succinate dehydr 98.7 7.8E-07 1.7E-11 93.9 16.8 39 20-63 6-44 (588)
145 PRK09897 hypothetical protein; 98.7 5.1E-07 1.1E-11 93.2 15.0 41 269-309 124-165 (534)
146 TIGR01790 carotene-cycl lycope 98.6 2.4E-07 5.3E-12 93.3 12.5 44 266-310 97-141 (388)
147 PRK07804 L-aspartate oxidase; 98.6 1.1E-06 2.4E-11 92.0 17.6 42 17-63 12-53 (541)
148 PRK15317 alkyl hydroperoxide r 98.6 3E-07 6.5E-12 95.9 13.2 47 264-310 276-322 (517)
149 PRK12839 hypothetical protein; 98.6 1.2E-06 2.5E-11 92.2 17.3 44 18-66 5-48 (572)
150 PTZ00139 Succinate dehydrogena 98.6 1.3E-06 2.7E-11 92.8 17.2 42 17-63 25-66 (617)
151 PRK06854 adenylylsulfate reduc 98.6 1.3E-06 2.9E-11 92.5 17.1 37 20-61 10-48 (608)
152 PRK06263 sdhA succinate dehydr 98.6 1.3E-06 2.7E-11 91.8 16.7 40 19-64 5-45 (543)
153 TIGR03140 AhpF alkyl hydropero 98.6 6.1E-07 1.3E-11 93.5 14.3 45 266-310 279-323 (515)
154 PRK07803 sdhA succinate dehydr 98.6 1.3E-06 2.7E-11 93.0 16.7 39 20-63 7-45 (626)
155 PRK05945 sdhA succinate dehydr 98.6 7.2E-07 1.6E-11 94.2 14.8 54 257-310 135-197 (575)
156 PLN00128 Succinate dehydrogena 98.6 1.1E-06 2.4E-11 93.2 16.2 39 20-63 49-87 (635)
157 TIGR02485 CobZ_N-term precorri 98.6 8E-07 1.7E-11 90.8 14.6 60 251-310 117-183 (432)
158 PRK08275 putative oxidoreducta 98.6 7.5E-07 1.6E-11 93.7 14.6 42 15-61 3-46 (554)
159 COG0578 GlpA Glycerol-3-phosph 98.6 3.2E-07 6.9E-12 93.0 10.8 42 20-66 11-52 (532)
160 PF13454 NAD_binding_9: FAD-NA 98.6 1.9E-06 4.2E-11 74.7 14.2 41 268-308 114-155 (156)
161 PRK07057 sdhA succinate dehydr 98.6 3.1E-06 6.8E-11 89.5 18.6 40 19-63 10-49 (591)
162 PRK06069 sdhA succinate dehydr 98.6 1.8E-06 4E-11 91.2 16.6 38 21-63 5-45 (577)
163 PRK08626 fumarate reductase fl 98.6 1.1E-06 2.4E-11 93.7 14.9 39 20-63 4-42 (657)
164 PRK08294 phenol 2-monooxygenas 98.5 9.2E-07 2E-11 94.1 13.9 37 19-60 30-67 (634)
165 PRK08205 sdhA succinate dehydr 98.5 2E-06 4.3E-11 91.0 16.1 38 20-63 4-41 (583)
166 PF01134 GIDA: Glucose inhibit 98.5 6.5E-07 1.4E-11 87.8 11.5 49 260-309 101-151 (392)
167 TIGR00551 nadB L-aspartate oxi 98.5 4E-06 8.6E-11 86.9 18.0 38 21-64 2-39 (488)
168 PF06039 Mqo: Malate:quinone o 98.5 2.2E-06 4.8E-11 84.4 15.0 43 20-65 2-44 (488)
169 PRK08401 L-aspartate oxidase; 98.5 2.6E-06 5.7E-11 87.7 16.5 52 258-311 121-176 (466)
170 PRK07395 L-aspartate oxidase; 98.5 2.2E-06 4.7E-11 89.8 16.1 41 18-64 6-46 (553)
171 PTZ00367 squalene epoxidase; P 98.5 2.2E-06 4.8E-11 89.5 15.8 35 20-59 32-66 (567)
172 KOG1439 RAB proteins geranylge 98.5 9.9E-07 2.1E-11 84.4 10.9 252 20-309 3-288 (440)
173 COG3573 Predicted oxidoreducta 98.5 1.2E-06 2.7E-11 81.6 11.2 52 20-84 4-57 (552)
174 PRK08071 L-aspartate oxidase; 98.5 3.1E-06 6.6E-11 88.0 15.5 54 257-310 130-190 (510)
175 PRK05329 anaerobic glycerol-3- 98.5 5.3E-07 1.1E-11 90.6 9.3 52 258-309 260-317 (422)
176 PRK09231 fumarate reductase fl 98.5 3.9E-06 8.4E-11 88.6 16.1 39 20-63 3-43 (582)
177 TIGR01176 fum_red_Fp fumarate 98.5 4.6E-06 9.9E-11 87.9 16.5 42 21-65 3-44 (580)
178 TIGR01811 sdhA_Bsu succinate d 98.5 3E-06 6.5E-11 89.7 14.8 35 24-63 1-35 (603)
179 PLN02815 L-aspartate oxidase 98.4 3E-06 6.4E-11 89.3 13.9 37 21-63 29-65 (594)
180 PRK07512 L-aspartate oxidase; 98.4 4E-06 8.6E-11 87.3 14.6 54 257-310 136-197 (513)
181 PF04820 Trp_halogenase: Trypt 98.4 1.8E-06 3.8E-11 88.3 11.5 61 249-310 148-211 (454)
182 TIGR03378 glycerol3P_GlpB glyc 98.4 3.9E-06 8.5E-11 83.4 13.3 55 257-311 263-323 (419)
183 PTZ00306 NADH-dependent fumara 98.4 4.1E-06 8.8E-11 95.2 14.8 42 19-65 407-448 (1167)
184 TIGR00136 gidA glucose-inhibit 98.4 4.2E-06 9E-11 86.6 12.9 35 22-61 1-35 (617)
185 PRK09077 L-aspartate oxidase; 98.4 1.6E-05 3.4E-10 83.4 17.3 40 19-64 6-45 (536)
186 TIGR03315 Se_ygfK putative sel 98.4 5.8E-07 1.3E-11 98.4 6.5 43 20-67 536-578 (1012)
187 PRK12779 putative bifunctional 98.3 6.3E-07 1.4E-11 98.9 6.5 43 19-66 304-346 (944)
188 PLN00093 geranylgeranyl diphos 98.3 7.4E-07 1.6E-11 90.9 6.5 39 16-59 34-72 (450)
189 PF06100 Strep_67kDa_ant: Stre 98.3 1.5E-05 3.3E-10 79.4 15.0 74 21-96 2-77 (500)
190 TIGR02061 aprA adenosine phosp 98.3 1.9E-05 4.1E-10 83.3 16.6 33 23-60 1-37 (614)
191 PRK05249 soluble pyridine nucl 98.3 6.6E-07 1.4E-11 92.3 5.5 47 264-310 226-272 (461)
192 PLN02852 ferredoxin-NADP+ redu 98.3 1.1E-06 2.4E-11 89.8 6.8 49 16-67 21-69 (491)
193 COG1252 Ndh NADH dehydrogenase 98.3 9.3E-06 2E-10 80.2 12.9 52 256-311 211-263 (405)
194 PRK12831 putative oxidoreducta 98.3 1.1E-06 2.3E-11 90.3 6.7 44 18-66 137-180 (464)
195 KOG2415 Electron transfer flav 98.3 8.1E-07 1.8E-11 85.2 4.6 49 18-66 73-122 (621)
196 PRK06115 dihydrolipoamide dehy 98.3 9.3E-07 2E-11 91.1 5.4 41 21-66 3-43 (466)
197 TIGR01424 gluta_reduc_2 glutat 98.2 1E-06 2.3E-11 90.3 5.2 51 260-310 213-263 (446)
198 PRK09853 putative selenate red 98.2 1.6E-06 3.4E-11 94.7 6.5 44 19-67 537-580 (1019)
199 TIGR01350 lipoamide_DH dihydro 98.2 1.2E-06 2.6E-11 90.3 5.4 52 259-310 216-269 (461)
200 PRK07251 pyridine nucleotide-d 98.2 1.4E-06 3E-11 89.2 5.7 53 257-310 201-253 (438)
201 TIGR03197 MnmC_Cterm tRNA U-34 98.2 1.7E-05 3.7E-10 79.6 13.4 66 247-312 122-192 (381)
202 COG1148 HdrA Heterodisulfide r 98.2 1.3E-06 2.8E-11 85.4 4.8 44 20-68 123-166 (622)
203 PF00743 FMO-like: Flavin-bind 98.2 1.3E-06 2.7E-11 90.7 5.1 40 22-66 2-41 (531)
204 PRK06416 dihydrolipoamide dehy 98.2 1.5E-06 3.3E-11 89.6 5.5 54 257-310 216-272 (462)
205 PRK14727 putative mercuric red 98.2 2.1E-06 4.6E-11 88.8 6.2 48 15-67 10-57 (479)
206 PRK08010 pyridine nucleotide-d 98.2 1.9E-06 4.2E-11 88.3 5.8 41 21-66 3-44 (441)
207 TIGR01421 gluta_reduc_1 glutat 98.2 1.6E-06 3.4E-11 88.9 5.2 40 21-66 2-41 (450)
208 PF12831 FAD_oxidored: FAD dep 98.2 1.7E-06 3.8E-11 88.0 4.8 39 23-66 1-39 (428)
209 PRK06116 glutathione reductase 98.2 1.9E-06 4.2E-11 88.5 5.2 48 263-310 217-265 (450)
210 TIGR01316 gltA glutamate synth 98.2 3.2E-06 7E-11 86.6 6.6 43 19-66 131-173 (449)
211 PRK06467 dihydrolipoamide dehy 98.2 2.4E-06 5.2E-11 88.1 5.6 42 20-66 3-44 (471)
212 PRK05976 dihydrolipoamide dehy 98.1 2.7E-06 5.8E-11 87.9 5.7 41 20-66 3-43 (472)
213 PRK12775 putative trifunctiona 98.1 2.8E-06 6.2E-11 94.6 6.2 42 20-66 429-470 (1006)
214 COG0493 GltD NADPH-dependent g 98.1 3.2E-06 6.8E-11 85.5 5.9 44 18-66 120-163 (457)
215 PRK12769 putative oxidoreducta 98.1 3.4E-06 7.5E-11 90.5 6.5 43 19-66 325-367 (654)
216 TIGR03143 AhpF_homolog putativ 98.1 3.3E-06 7.2E-11 88.8 6.1 42 20-67 3-44 (555)
217 PRK13800 putative oxidoreducta 98.1 6E-05 1.3E-09 83.8 16.1 38 18-60 10-47 (897)
218 PRK06370 mercuric reductase; V 98.1 3.3E-06 7.2E-11 87.1 5.8 41 20-66 4-44 (463)
219 TIGR02028 ChlP geranylgeranyl 98.1 2.8E-06 6.1E-11 85.6 5.1 36 22-62 1-36 (398)
220 PTZ00188 adrenodoxin reductase 98.1 4.5E-06 9.9E-11 84.1 6.4 44 20-68 38-82 (506)
221 PRK06292 dihydrolipoamide dehy 98.1 3.2E-06 6.8E-11 87.2 5.4 41 20-66 2-42 (460)
222 KOG0399 Glutamate synthase [Am 98.1 3.9E-06 8.5E-11 89.2 5.8 47 15-66 1779-1825(2142)
223 KOG2614 Kynurenine 3-monooxyge 98.1 4.2E-06 9.1E-11 80.9 5.4 36 21-61 2-37 (420)
224 PRK12778 putative bifunctional 98.1 5.1E-06 1.1E-10 90.7 6.6 43 19-66 429-471 (752)
225 PRK07818 dihydrolipoamide dehy 98.1 4.5E-06 9.8E-11 86.1 5.8 40 21-66 4-43 (466)
226 PRK12810 gltD glutamate syntha 98.1 6.3E-06 1.4E-10 85.0 6.6 42 20-66 142-183 (471)
227 TIGR02053 MerA mercuric reduct 98.1 4.4E-06 9.4E-11 86.2 5.3 39 22-66 1-39 (463)
228 PRK10262 thioredoxin reductase 98.1 5.1E-06 1.1E-10 81.4 5.6 44 18-67 3-46 (321)
229 PRK11749 dihydropyrimidine deh 98.0 6.7E-06 1.4E-10 84.6 6.5 43 19-66 138-180 (457)
230 PRK12834 putative FAD-binding 98.0 5.7E-06 1.2E-10 87.0 6.0 42 20-66 3-46 (549)
231 KOG2404 Fumarate reductase, fl 98.0 4.5E-05 9.7E-10 71.1 10.9 39 23-66 11-49 (477)
232 PRK14694 putative mercuric red 98.0 5.3E-06 1.1E-10 85.6 5.5 42 19-66 4-45 (468)
233 PRK12814 putative NADPH-depend 98.0 6.8E-06 1.5E-10 88.0 6.5 42 20-66 192-233 (652)
234 PRK06567 putative bifunctional 98.0 6.2E-06 1.3E-10 89.1 6.1 41 18-63 380-420 (1028)
235 PRK12809 putative oxidoreducta 98.0 7E-06 1.5E-10 87.8 6.5 43 19-66 308-350 (639)
236 PTZ00058 glutathione reductase 98.0 5.2E-06 1.1E-10 86.8 5.3 41 20-66 47-87 (561)
237 PRK13748 putative mercuric red 98.0 5.5E-06 1.2E-10 87.7 5.5 41 20-66 97-137 (561)
238 COG5044 MRS6 RAB proteins gera 98.0 0.00024 5.2E-09 67.7 15.6 45 21-70 6-50 (434)
239 TIGR01318 gltD_gamma_fam gluta 98.0 9.4E-06 2E-10 83.5 6.6 43 19-66 139-181 (467)
240 PRK12835 3-ketosteroid-delta-1 98.0 7.2E-06 1.6E-10 86.6 5.6 43 17-64 7-49 (584)
241 PRK06327 dihydrolipoamide dehy 98.0 7.8E-06 1.7E-10 84.5 5.5 42 20-66 3-50 (475)
242 KOG2665 Predicted FAD-dependen 98.0 6.8E-05 1.5E-09 69.7 10.8 43 17-62 44-86 (453)
243 PRK05335 tRNA (uracil-5-)-meth 98.0 8.4E-06 1.8E-10 80.9 5.3 36 21-61 2-37 (436)
244 COG0492 TrxB Thioredoxin reduc 98.0 7.7E-06 1.7E-10 78.5 4.8 43 20-68 2-45 (305)
245 PRK07843 3-ketosteroid-delta-1 98.0 9.6E-06 2.1E-10 85.3 6.0 44 18-66 4-47 (557)
246 PLN02507 glutathione reductase 98.0 9E-06 2E-10 84.3 5.7 53 258-310 248-300 (499)
247 PTZ00052 thioredoxin reductase 98.0 9.1E-06 2E-10 84.3 5.4 52 259-310 227-278 (499)
248 TIGR01423 trypano_reduc trypan 97.9 1.3E-05 2.7E-10 82.8 5.6 48 263-310 240-288 (486)
249 TIGR01317 GOGAT_sm_gam glutama 97.9 1.8E-05 4E-10 81.8 6.5 42 20-66 142-183 (485)
250 PTZ00153 lipoamide dehydrogena 97.9 1.7E-05 3.6E-10 84.2 5.8 41 21-66 116-157 (659)
251 TIGR01372 soxA sarcosine oxida 97.9 1.4E-05 3.1E-10 89.4 5.6 42 21-67 163-204 (985)
252 COG1249 Lpd Pyruvate/2-oxoglut 97.9 1.8E-05 3.9E-10 80.1 5.6 42 20-66 3-44 (454)
253 PRK08641 sdhA succinate dehydr 97.9 1.5E-05 3.3E-10 84.3 5.2 38 21-63 3-40 (589)
254 PRK12771 putative glutamate sy 97.9 2.5E-05 5.3E-10 82.6 6.7 44 18-66 134-177 (564)
255 KOG1298 Squalene monooxygenase 97.8 1.8E-05 3.8E-10 75.5 4.8 36 18-58 42-77 (509)
256 PLN02546 glutathione reductase 97.8 2.3E-05 4.9E-10 82.0 6.0 51 260-310 299-350 (558)
257 PF07992 Pyr_redox_2: Pyridine 97.8 1.5E-05 3.3E-10 72.2 4.0 33 23-60 1-33 (201)
258 COG0029 NadB Aspartate oxidase 97.8 0.00033 7.2E-09 69.6 13.3 61 249-309 124-195 (518)
259 PF00732 GMC_oxred_N: GMC oxid 97.8 1.3E-05 2.8E-10 77.5 3.5 34 22-60 1-35 (296)
260 TIGR00137 gid_trmFO tRNA:m(5)U 97.8 2.1E-05 4.5E-10 78.7 4.8 37 22-63 1-37 (433)
261 PRK12770 putative glutamate sy 97.8 3.2E-05 6.9E-10 76.8 6.1 42 20-66 17-58 (352)
262 PRK14989 nitrite reductase sub 97.8 0.00012 2.6E-09 80.3 11.0 55 256-310 189-245 (847)
263 COG2509 Uncharacterized FAD-de 97.8 9.8E-05 2.1E-09 72.4 8.9 53 257-309 173-229 (486)
264 KOG2960 Protein involved in th 97.8 1E-05 2.2E-10 70.7 1.8 69 21-102 76-146 (328)
265 PF00070 Pyr_redox: Pyridine n 97.7 5.7E-05 1.2E-09 57.3 5.3 34 23-61 1-34 (80)
266 PRK09754 phenylpropionate diox 97.7 0.00038 8.2E-09 70.3 12.7 45 265-310 197-241 (396)
267 PRK06912 acoL dihydrolipoamide 97.7 3.4E-05 7.5E-10 79.4 5.1 38 23-66 2-39 (458)
268 PRK13984 putative oxidoreducta 97.7 5.6E-05 1.2E-09 80.6 6.5 43 19-66 281-323 (604)
269 PRK04965 NADH:flavorubredoxin 97.7 0.00047 1E-08 69.1 12.7 46 265-310 194-239 (377)
270 KOG1800 Ferredoxin/adrenodoxin 97.7 6.8E-05 1.5E-09 71.6 5.7 48 17-67 16-63 (468)
271 TIGR02462 pyranose_ox pyranose 97.7 4.9E-05 1.1E-09 78.7 5.2 37 22-63 1-37 (544)
272 PRK08255 salicylyl-CoA 5-hydro 97.7 4.4E-05 9.6E-10 83.3 5.0 34 22-60 1-36 (765)
273 TIGR01438 TGR thioredoxin and 97.6 5.7E-05 1.2E-09 78.1 5.3 52 259-310 225-279 (484)
274 PRK07845 flavoprotein disulfid 97.6 6E-05 1.3E-09 77.7 5.4 53 258-310 222-274 (466)
275 PF13434 K_oxygenase: L-lysine 97.6 0.00011 2.5E-09 72.0 6.6 52 257-308 98-157 (341)
276 COG4529 Uncharacterized protei 97.6 0.00075 1.6E-08 67.2 12.3 41 21-63 1-41 (474)
277 COG3075 GlpB Anaerobic glycero 97.6 7.1E-05 1.5E-09 70.1 4.7 45 266-310 270-317 (421)
278 TIGR01350 lipoamide_DH dihydro 97.6 0.00077 1.7E-08 69.6 12.9 35 21-60 170-204 (461)
279 KOG4405 GDP dissociation inhib 97.6 0.0023 5E-08 61.8 14.8 113 196-308 220-343 (547)
280 PRK06416 dihydrolipoamide dehy 97.6 0.0008 1.7E-08 69.5 12.9 36 21-61 172-207 (462)
281 COG1053 SdhA Succinate dehydro 97.5 0.00011 2.3E-09 76.6 5.3 41 18-63 3-43 (562)
282 KOG1335 Dihydrolipoamide dehyd 97.5 0.00014 3E-09 69.5 5.1 42 20-66 38-79 (506)
283 PRK07251 pyridine nucleotide-d 97.5 0.0014 3.1E-08 67.1 12.7 36 21-61 157-192 (438)
284 COG0445 GidA Flavin-dependent 97.4 0.00058 1.3E-08 68.6 9.1 33 21-58 4-36 (621)
285 PRK05249 soluble pyridine nucl 97.4 0.0016 3.5E-08 67.2 12.8 36 21-61 175-210 (461)
286 PRK02106 choline dehydrogenase 97.4 0.00017 3.6E-09 76.3 5.3 36 20-59 4-39 (560)
287 COG2303 BetA Choline dehydroge 97.4 0.00016 3.6E-09 75.6 5.0 38 17-59 3-40 (542)
288 TIGR02374 nitri_red_nirB nitri 97.4 0.0016 3.5E-08 71.5 12.6 47 264-310 192-238 (785)
289 KOG2852 Possible oxidoreductas 97.3 0.00011 2.3E-09 67.7 2.3 47 17-63 6-53 (380)
290 TIGR01424 gluta_reduc_2 glutat 97.3 0.0025 5.5E-08 65.4 12.7 35 21-60 166-200 (446)
291 PRK07845 flavoprotein disulfid 97.3 0.0028 6.1E-08 65.4 13.0 35 22-61 178-212 (466)
292 PRK13512 coenzyme A disulfide 97.3 0.00027 5.9E-09 72.3 5.2 38 22-62 2-39 (438)
293 PRK07846 mycothione reductase; 97.3 0.00026 5.6E-09 72.7 5.1 44 267-310 219-262 (451)
294 PLN02507 glutathione reductase 97.3 0.0036 7.9E-08 65.1 13.5 35 21-60 203-237 (499)
295 TIGR03452 mycothione_red mycot 97.3 0.00031 6.7E-09 72.1 5.4 44 267-310 222-265 (452)
296 PRK09564 coenzyme A disulfide 97.3 0.0003 6.5E-09 72.2 5.1 53 257-310 194-246 (444)
297 PRK05976 dihydrolipoamide dehy 97.3 0.0032 7E-08 65.1 12.7 35 21-60 180-214 (472)
298 PRK06370 mercuric reductase; V 97.3 0.0034 7.4E-08 64.8 12.8 35 21-60 171-205 (463)
299 PRK06116 glutathione reductase 97.3 0.0033 7.2E-08 64.6 12.6 35 21-60 167-201 (450)
300 COG1249 Lpd Pyruvate/2-oxoglut 97.2 0.0038 8.3E-08 63.4 12.5 43 267-309 227-271 (454)
301 TIGR01810 betA choline dehydro 97.2 0.00028 6E-09 74.2 4.3 45 266-310 206-255 (532)
302 TIGR01421 gluta_reduc_1 glutat 97.2 0.0037 7.9E-08 64.2 12.3 46 265-310 218-265 (450)
303 PRK07818 dihydrolipoamide dehy 97.2 0.0053 1.2E-07 63.4 13.4 46 265-310 224-273 (466)
304 PRK06327 dihydrolipoamide dehy 97.1 0.0053 1.1E-07 63.6 12.4 45 266-310 236-284 (475)
305 PRK09754 phenylpropionate diox 97.0 0.00072 1.6E-08 68.3 5.0 36 21-61 3-40 (396)
306 PRK08010 pyridine nucleotide-d 97.0 0.011 2.4E-07 60.7 12.8 45 265-310 210-254 (441)
307 COG4716 Myosin-crossreactive a 96.9 0.0053 1.1E-07 58.8 9.3 46 21-67 22-67 (587)
308 PRK04965 NADH:flavorubredoxin 96.9 0.0014 2.9E-08 65.8 5.4 37 21-60 2-38 (377)
309 PTZ00318 NADH dehydrogenase-li 96.9 0.0013 2.8E-08 67.1 5.2 49 257-309 231-279 (424)
310 PLN02785 Protein HOTHEAD 96.9 0.0013 2.8E-08 69.4 5.2 35 19-59 53-87 (587)
311 TIGR01423 trypano_reduc trypan 96.8 0.014 3E-07 60.4 12.5 39 21-61 187-225 (486)
312 PRK14727 putative mercuric red 96.8 0.02 4.2E-07 59.4 13.6 45 265-310 239-283 (479)
313 KOG0405 Pyridine nucleotide-di 96.8 0.0021 4.4E-08 61.0 5.3 47 15-66 14-60 (478)
314 COG0446 HcaD Uncharacterized N 96.7 0.0017 3.7E-08 65.7 4.9 40 21-65 136-175 (415)
315 PRK14694 putative mercuric red 96.7 0.022 4.8E-07 58.8 13.1 45 265-310 229-273 (468)
316 PRK13748 putative mercuric red 96.7 0.024 5.2E-07 60.1 13.1 45 265-310 321-365 (561)
317 PTZ00052 thioredoxin reductase 96.7 0.014 3E-07 60.8 11.0 32 22-58 183-214 (499)
318 COG1206 Gid NAD(FAD)-utilizing 96.6 0.002 4.4E-08 60.6 4.1 35 21-60 3-37 (439)
319 TIGR02352 thiamin_ThiO glycine 96.5 0.0056 1.2E-07 60.1 6.8 64 248-312 125-195 (337)
320 TIGR03169 Nterm_to_SelD pyridi 96.5 0.0028 6E-08 63.2 4.4 51 256-310 193-243 (364)
321 TIGR01438 TGR thioredoxin and 96.5 0.039 8.5E-07 57.2 12.9 32 22-58 181-212 (484)
322 KOG4716 Thioredoxin reductase 96.5 0.0041 9E-08 58.7 4.9 37 16-57 14-50 (503)
323 PF01210 NAD_Gly3P_dh_N: NAD-d 96.4 0.0044 9.6E-08 53.7 4.3 32 23-59 1-32 (157)
324 KOG1238 Glucose dehydrogenase/ 96.3 0.005 1.1E-07 63.6 4.7 40 18-61 54-93 (623)
325 KOG3855 Monooxygenase involved 95.9 0.011 2.4E-07 57.5 5.1 42 17-59 32-73 (481)
326 TIGR03862 flavo_PP4765 unchara 95.9 0.018 3.9E-07 57.0 6.6 61 247-309 75-140 (376)
327 PF02737 3HCDH_N: 3-hydroxyacy 95.9 0.011 2.5E-07 52.3 4.7 33 23-60 1-33 (180)
328 KOG0042 Glycerol-3-phosphate d 95.9 0.0037 8.1E-08 62.7 1.7 40 21-65 67-106 (680)
329 TIGR02374 nitri_red_nirB nitri 95.9 0.0085 1.8E-07 65.8 4.7 37 24-62 1-37 (785)
330 PRK01438 murD UDP-N-acetylmura 95.7 0.015 3.1E-07 60.4 5.3 35 21-60 16-50 (480)
331 PF03721 UDPG_MGDP_dh_N: UDP-g 95.6 0.015 3.2E-07 51.8 4.3 34 22-60 1-34 (185)
332 COG3634 AhpF Alkyl hydroperoxi 95.5 0.0086 1.9E-07 56.9 2.4 42 18-66 208-249 (520)
333 KOG3923 D-aspartate oxidase [A 95.5 0.012 2.7E-07 54.8 3.4 38 20-57 2-41 (342)
334 PRK06129 3-hydroxyacyl-CoA deh 95.5 0.019 4.1E-07 55.8 4.9 33 22-59 3-35 (308)
335 PRK02705 murD UDP-N-acetylmura 95.3 0.02 4.3E-07 59.0 4.9 34 23-61 2-35 (459)
336 PRK07066 3-hydroxybutyryl-CoA 95.3 0.03 6.4E-07 54.4 5.4 34 21-59 7-40 (321)
337 KOG2755 Oxidoreductase [Genera 95.1 0.016 3.4E-07 53.1 2.8 69 24-95 2-72 (334)
338 PF02558 ApbA: Ketopantoate re 95.1 0.036 7.9E-07 47.4 4.9 31 24-59 1-31 (151)
339 PRK07819 3-hydroxybutyryl-CoA 95.0 0.032 6.9E-07 53.5 4.8 34 22-60 6-39 (286)
340 TIGR02053 MerA mercuric reduct 95.0 0.03 6.6E-07 57.8 5.0 35 21-60 166-200 (463)
341 PRK07846 mycothione reductase; 95.0 0.034 7.4E-07 57.1 5.3 36 21-61 166-201 (451)
342 PRK06912 acoL dihydrolipoamide 95.0 0.035 7.6E-07 57.2 5.3 35 21-60 170-204 (458)
343 PRK06115 dihydrolipoamide dehy 94.9 0.037 8.1E-07 57.1 5.3 35 21-60 174-208 (466)
344 PRK06467 dihydrolipoamide dehy 94.9 0.035 7.7E-07 57.4 5.1 34 22-60 175-208 (471)
345 PRK08293 3-hydroxybutyryl-CoA 94.8 0.035 7.7E-07 53.3 4.6 33 22-59 4-36 (287)
346 PRK06249 2-dehydropantoate 2-r 94.7 0.05 1.1E-06 53.0 5.3 34 21-59 5-38 (313)
347 PRK13512 coenzyme A disulfide 94.7 0.041 9E-07 56.3 4.9 36 21-61 148-183 (438)
348 KOG0404 Thioredoxin reductase 94.7 0.056 1.2E-06 48.3 4.9 42 22-68 9-54 (322)
349 PRK06292 dihydrolipoamide dehy 94.6 0.046 1E-06 56.4 5.2 36 21-61 169-204 (460)
350 TIGR03385 CoA_CoA_reduc CoA-di 94.6 0.046 1E-06 55.8 5.2 35 21-60 137-171 (427)
351 PRK09260 3-hydroxybutyryl-CoA 94.6 0.044 9.5E-07 52.7 4.7 33 22-59 2-34 (288)
352 PRK05708 2-dehydropantoate 2-r 94.5 0.05 1.1E-06 52.7 4.8 33 21-58 2-34 (305)
353 COG0569 TrkA K+ transport syst 94.5 0.048 1E-06 50.2 4.4 68 22-102 1-68 (225)
354 PRK07530 3-hydroxybutyryl-CoA 94.5 0.057 1.2E-06 52.0 5.1 33 22-59 5-37 (292)
355 PRK08229 2-dehydropantoate 2-r 94.5 0.051 1.1E-06 53.6 4.8 33 21-58 2-34 (341)
356 TIGR03452 mycothione_red mycot 94.4 0.055 1.2E-06 55.6 5.1 36 21-61 169-204 (452)
357 PF01262 AlaDh_PNT_C: Alanine 94.3 0.073 1.6E-06 46.6 5.0 35 20-59 19-53 (168)
358 PRK14106 murD UDP-N-acetylmura 94.3 0.063 1.4E-06 55.2 5.2 34 21-59 5-38 (450)
359 PRK06035 3-hydroxyacyl-CoA deh 94.2 0.057 1.2E-06 52.0 4.4 33 22-59 4-36 (291)
360 PRK06522 2-dehydropantoate 2-r 94.2 0.062 1.3E-06 52.0 4.7 32 22-58 1-32 (304)
361 PRK14619 NAD(P)H-dependent gly 94.2 0.079 1.7E-06 51.4 5.4 35 20-59 3-37 (308)
362 cd01080 NAD_bind_m-THF_DH_Cycl 94.1 0.09 2E-06 45.9 5.0 34 20-58 43-77 (168)
363 COG0686 Ald Alanine dehydrogen 94.1 0.075 1.6E-06 50.0 4.6 45 21-70 168-220 (371)
364 PRK12921 2-dehydropantoate 2-r 94.0 0.066 1.4E-06 51.9 4.6 31 22-57 1-31 (305)
365 TIGR03140 AhpF alkyl hydropero 94.0 0.073 1.6E-06 55.7 5.1 35 21-60 352-386 (515)
366 KOG2311 NAD/FAD-utilizing prot 94.0 0.06 1.3E-06 53.5 4.1 35 19-58 26-60 (679)
367 PRK09564 coenzyme A disulfide 94.0 0.077 1.7E-06 54.4 5.2 36 21-61 149-184 (444)
368 PRK14618 NAD(P)H-dependent gly 93.9 0.093 2E-06 51.5 5.3 34 21-59 4-37 (328)
369 PTZ00153 lipoamide dehydrogena 93.9 0.081 1.8E-06 56.6 5.2 35 21-60 312-346 (659)
370 PTZ00058 glutathione reductase 93.8 0.079 1.7E-06 55.8 4.9 35 21-60 237-271 (561)
371 TIGR01470 cysG_Nterm siroheme 93.8 0.11 2.3E-06 47.2 5.1 34 21-59 9-42 (205)
372 PF01488 Shikimate_DH: Shikima 93.8 0.12 2.5E-06 43.5 5.0 34 20-58 11-45 (135)
373 PLN02545 3-hydroxybutyryl-CoA 93.8 0.1 2.2E-06 50.3 5.3 33 22-59 5-37 (295)
374 KOG2304 3-hydroxyacyl-CoA dehy 93.7 0.084 1.8E-06 47.3 4.0 37 18-59 8-44 (298)
375 PRK05808 3-hydroxybutyryl-CoA 93.6 0.091 2E-06 50.3 4.6 33 22-59 4-36 (282)
376 PRK08268 3-hydroxy-acyl-CoA de 93.6 0.12 2.5E-06 53.8 5.6 36 20-60 6-41 (507)
377 TIGR03377 glycerol3P_GlpA glyc 93.6 0.27 5.9E-06 51.5 8.4 57 257-313 128-193 (516)
378 PRK06130 3-hydroxybutyryl-CoA 93.5 0.12 2.5E-06 50.4 5.3 34 21-59 4-37 (311)
379 COG3486 IucD Lysine/ornithine 93.5 0.72 1.6E-05 45.4 10.4 38 19-60 3-40 (436)
380 PF13241 NAD_binding_7: Putati 93.4 0.074 1.6E-06 42.3 3.1 34 20-58 6-39 (103)
381 PRK05675 sdhA succinate dehydr 93.4 1 2.2E-05 47.7 12.4 54 257-310 126-189 (570)
382 cd05292 LDH_2 A subgroup of L- 93.3 0.12 2.6E-06 50.2 4.9 33 22-59 1-35 (308)
383 PRK14989 nitrite reductase sub 93.3 0.11 2.3E-06 57.6 5.1 35 22-61 146-180 (847)
384 PRK10262 thioredoxin reductase 93.3 0.12 2.7E-06 50.4 5.1 34 21-59 146-179 (321)
385 PRK06718 precorrin-2 dehydroge 93.3 0.15 3.2E-06 46.1 5.1 34 20-58 9-42 (202)
386 PRK15317 alkyl hydroperoxide r 93.2 0.12 2.6E-06 54.2 5.1 35 21-60 351-385 (517)
387 TIGR01316 gltA glutamate synth 93.2 0.13 2.8E-06 52.9 5.2 35 20-59 271-305 (449)
388 COG1748 LYS9 Saccharopine dehy 93.2 0.17 3.8E-06 50.0 5.8 33 21-58 1-34 (389)
389 PRK06719 precorrin-2 dehydroge 93.2 0.16 3.5E-06 43.8 5.0 33 20-57 12-44 (157)
390 PRK14620 NAD(P)H-dependent gly 93.2 0.12 2.7E-06 50.5 4.8 31 23-58 2-32 (326)
391 PF03446 NAD_binding_2: NAD bi 93.1 0.14 3E-06 44.6 4.6 33 22-59 2-34 (163)
392 TIGR03143 AhpF_homolog putativ 93.1 0.12 2.6E-06 54.6 5.1 35 21-60 143-177 (555)
393 COG3634 AhpF Alkyl hydroperoxi 93.1 0.13 2.8E-06 49.2 4.5 45 10-59 342-387 (520)
394 PRK00094 gpsA NAD(P)H-dependen 93.1 0.14 3E-06 50.1 5.0 33 22-59 2-34 (325)
395 TIGR01763 MalateDH_bact malate 93.0 0.15 3.3E-06 49.3 5.1 33 22-59 2-35 (305)
396 PRK11064 wecC UDP-N-acetyl-D-m 93.0 0.13 2.8E-06 52.2 4.7 34 22-60 4-37 (415)
397 TIGR03026 NDP-sugDHase nucleot 93.0 0.12 2.7E-06 52.3 4.7 33 23-60 2-34 (411)
398 PF00070 Pyr_redox: Pyridine n 93.0 0.24 5.2E-06 37.2 5.2 38 257-294 43-80 (80)
399 PRK04148 hypothetical protein; 93.0 0.14 3.1E-06 42.5 4.1 34 21-60 17-50 (134)
400 PLN02546 glutathione reductase 93.0 0.14 3E-06 53.9 5.1 36 21-61 252-287 (558)
401 TIGR00518 alaDH alanine dehydr 92.8 0.16 3.5E-06 50.5 5.1 35 20-59 166-200 (370)
402 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.7 0.16 3.4E-06 52.8 5.0 34 21-59 5-38 (503)
403 TIGR01292 TRX_reduct thioredox 92.7 0.17 3.8E-06 48.6 5.0 34 21-59 141-174 (300)
404 PRK12831 putative oxidoreducta 92.7 0.17 3.7E-06 52.2 5.2 35 20-59 280-314 (464)
405 TIGR02354 thiF_fam2 thiamine b 92.5 0.2 4.4E-06 45.1 4.9 33 21-58 21-54 (200)
406 PRK12770 putative glutamate sy 92.5 0.17 3.7E-06 50.1 4.8 34 21-59 172-206 (352)
407 PRK07531 bifunctional 3-hydrox 92.4 0.16 3.4E-06 52.9 4.5 33 22-59 5-37 (495)
408 PRK07417 arogenate dehydrogena 92.4 0.18 3.8E-06 48.2 4.6 32 23-59 2-33 (279)
409 PF10727 Rossmann-like: Rossma 92.3 0.13 2.8E-06 42.6 3.0 40 15-59 4-43 (127)
410 PRK09424 pntA NAD(P) transhydr 92.3 0.18 3.9E-06 52.0 4.7 35 20-59 164-198 (509)
411 COG1004 Ugd Predicted UDP-gluc 92.2 0.19 4.1E-06 49.3 4.4 33 22-59 1-33 (414)
412 PRK01710 murD UDP-N-acetylmura 92.2 0.19 4.2E-06 51.7 4.9 34 21-59 14-47 (458)
413 PRK04690 murD UDP-N-acetylmura 92.2 0.19 4.2E-06 51.8 4.9 34 21-59 8-41 (468)
414 PLN02353 probable UDP-glucose 91.9 0.23 4.9E-06 51.1 4.9 33 22-59 2-36 (473)
415 COG0771 MurD UDP-N-acetylmuram 91.8 0.23 5E-06 50.2 4.8 36 21-61 7-42 (448)
416 cd00401 AdoHcyase S-adenosyl-L 91.8 0.25 5.5E-06 49.6 5.1 35 20-59 201-235 (413)
417 cd05191 NAD_bind_amino_acid_DH 91.8 0.37 8E-06 36.8 5.0 34 19-57 21-55 (86)
418 COG1250 FadB 3-hydroxyacyl-CoA 91.8 0.2 4.3E-06 48.0 4.1 34 21-59 3-36 (307)
419 cd01075 NAD_bind_Leu_Phe_Val_D 91.6 0.32 6.9E-06 43.9 5.1 35 20-59 27-61 (200)
420 TIGR01915 npdG NADPH-dependent 91.6 0.28 6E-06 45.0 4.7 33 22-59 1-34 (219)
421 PRK03369 murD UDP-N-acetylmura 91.6 0.26 5.6E-06 51.2 5.0 34 20-58 11-44 (488)
422 PRK11730 fadB multifunctional 91.3 0.3 6.4E-06 53.2 5.4 35 21-60 313-347 (715)
423 PRK08306 dipicolinate synthase 91.3 0.33 7.2E-06 46.7 5.2 35 20-59 151-185 (296)
424 KOG3851 Sulfide:quinone oxidor 91.3 0.25 5.4E-06 46.8 4.0 39 18-59 36-74 (446)
425 TIGR02437 FadB fatty oxidation 91.2 0.31 6.7E-06 53.0 5.4 35 20-59 312-346 (714)
426 PRK06223 malate dehydrogenase; 91.2 0.34 7.3E-06 47.0 5.1 33 22-59 3-36 (307)
427 PRK12549 shikimate 5-dehydroge 91.0 0.35 7.6E-06 46.3 5.0 35 20-59 126-161 (284)
428 PRK02472 murD UDP-N-acetylmura 91.0 0.31 6.6E-06 50.1 4.9 34 21-59 5-38 (447)
429 PRK04308 murD UDP-N-acetylmura 90.9 0.36 7.9E-06 49.5 5.4 35 21-60 5-39 (445)
430 PF02254 TrkA_N: TrkA-N domain 90.8 0.45 9.7E-06 38.5 4.8 32 24-60 1-32 (116)
431 PRK11749 dihydropyrimidine deh 90.8 0.37 8.1E-06 49.6 5.3 35 20-59 272-307 (457)
432 COG1893 ApbA Ketopantoate redu 90.6 0.29 6.2E-06 47.4 4.0 33 22-59 1-33 (307)
433 cd05291 HicDH_like L-2-hydroxy 90.6 0.39 8.5E-06 46.5 5.0 32 23-59 2-35 (306)
434 PRK11559 garR tartronate semia 90.5 0.39 8.4E-06 46.3 4.9 33 22-59 3-35 (296)
435 PTZ00082 L-lactate dehydrogena 90.5 0.45 9.7E-06 46.4 5.2 34 22-60 7-41 (321)
436 PRK11199 tyrA bifunctional cho 90.5 0.39 8.4E-06 48.0 4.9 35 20-59 97-132 (374)
437 cd05311 NAD_bind_2_malic_enz N 90.5 0.4 8.6E-06 44.2 4.6 35 20-59 24-61 (226)
438 TIGR00561 pntA NAD(P) transhyd 90.4 0.42 9.1E-06 49.3 5.2 34 21-59 164-197 (511)
439 TIGR02440 FadJ fatty oxidation 90.4 0.39 8.6E-06 52.1 5.2 34 21-59 304-338 (699)
440 TIGR02441 fa_ox_alpha_mit fatt 90.4 0.32 7E-06 53.0 4.5 35 20-59 334-368 (737)
441 TIGR01505 tartro_sem_red 2-hyd 90.2 0.35 7.7E-06 46.5 4.3 32 23-59 1-32 (291)
442 PRK11154 fadJ multifunctional 90.0 0.37 8E-06 52.4 4.6 34 21-59 309-343 (708)
443 PRK12778 putative bifunctional 90.0 0.41 8.8E-06 52.7 5.1 34 21-59 570-604 (752)
444 TIGR02853 spore_dpaA dipicolin 90.0 0.5 1.1E-05 45.3 5.0 35 20-59 150-184 (287)
445 PF00056 Ldh_1_N: lactate/mala 89.9 0.63 1.4E-05 39.3 5.1 35 22-59 1-36 (141)
446 COG1252 Ndh NADH dehydrogenase 89.7 0.27 5.9E-06 49.1 3.0 40 22-61 156-203 (405)
447 PRK15461 NADH-dependent gamma- 89.6 0.5 1.1E-05 45.6 4.7 33 22-59 2-34 (296)
448 PRK00141 murD UDP-N-acetylmura 89.6 0.49 1.1E-05 48.9 5.0 33 21-58 15-47 (473)
449 PF00899 ThiF: ThiF family; I 89.5 0.51 1.1E-05 39.5 4.2 33 21-58 2-35 (135)
450 TIGR00872 gnd_rel 6-phosphoglu 89.4 0.52 1.1E-05 45.5 4.7 32 23-59 2-33 (298)
451 KOG1335 Dihydrolipoamide dehyd 89.4 0.23 5E-06 48.2 2.2 38 21-63 211-248 (506)
452 TIGR00507 aroE shikimate 5-deh 89.3 0.59 1.3E-05 44.4 5.0 35 20-59 116-150 (270)
453 cd05293 LDH_1 A subgroup of L- 89.3 0.66 1.4E-05 45.0 5.4 35 20-59 2-38 (312)
454 TIGR00936 ahcY adenosylhomocys 89.3 0.59 1.3E-05 46.8 5.0 35 20-59 194-228 (406)
455 TIGR03376 glycerol3P_DH glycer 89.2 0.52 1.1E-05 46.3 4.6 31 23-58 1-39 (342)
456 PRK00421 murC UDP-N-acetylmura 89.2 0.5 1.1E-05 48.7 4.8 34 21-59 7-41 (461)
457 PRK12475 thiamine/molybdopteri 89.2 0.6 1.3E-05 45.8 5.0 33 21-58 24-57 (338)
458 PRK07502 cyclohexadienyl dehyd 89.2 0.6 1.3E-05 45.3 5.0 34 21-59 6-41 (307)
459 cd01065 NAD_bind_Shikimate_DH 89.1 0.72 1.6E-05 39.5 5.0 35 20-59 18-53 (155)
460 PRK07688 thiamine/molybdopteri 89.1 0.63 1.4E-05 45.7 5.1 33 21-58 24-57 (339)
461 PRK15057 UDP-glucose 6-dehydro 89.1 0.49 1.1E-05 47.4 4.4 31 23-59 2-32 (388)
462 cd01078 NAD_bind_H4MPT_DH NADP 89.1 0.71 1.5E-05 41.4 5.1 34 20-58 27-61 (194)
463 PRK00066 ldh L-lactate dehydro 89.0 0.7 1.5E-05 44.9 5.3 34 21-59 6-41 (315)
464 cd01339 LDH-like_MDH L-lactate 89.0 0.51 1.1E-05 45.6 4.4 31 24-59 1-32 (300)
465 PTZ00142 6-phosphogluconate de 89.0 0.49 1.1E-05 48.6 4.4 34 22-60 2-35 (470)
466 PRK02006 murD UDP-N-acetylmura 88.9 0.55 1.2E-05 49.0 4.8 34 21-59 7-40 (498)
467 PF13478 XdhC_C: XdhC Rossmann 88.8 0.63 1.4E-05 39.0 4.2 31 24-59 1-31 (136)
468 PRK15116 sulfur acceptor prote 88.8 0.69 1.5E-05 43.6 4.9 33 21-58 30-63 (268)
469 PTZ00117 malate dehydrogenase; 88.7 0.73 1.6E-05 44.9 5.2 34 21-59 5-39 (319)
470 PRK09599 6-phosphogluconate de 88.4 0.68 1.5E-05 44.7 4.8 32 23-59 2-33 (301)
471 PRK05476 S-adenosyl-L-homocyst 88.2 0.76 1.6E-05 46.4 5.1 35 20-59 211-245 (425)
472 PRK12439 NAD(P)H-dependent gly 88.1 0.87 1.9E-05 44.9 5.4 33 20-58 6-38 (341)
473 PF00670 AdoHcyase_NAD: S-aden 88.1 0.68 1.5E-05 39.8 4.0 34 21-59 23-56 (162)
474 cd01487 E1_ThiF_like E1_ThiF_l 87.9 0.84 1.8E-05 40.1 4.6 31 23-58 1-32 (174)
475 PRK09496 trkA potassium transp 87.8 0.7 1.5E-05 47.5 4.8 33 22-59 1-33 (453)
476 COG2084 MmsB 3-hydroxyisobutyr 87.8 0.79 1.7E-05 43.5 4.6 34 22-60 1-34 (286)
477 PTZ00345 glycerol-3-phosphate 87.8 0.85 1.8E-05 45.2 5.1 35 20-59 10-51 (365)
478 PRK12548 shikimate 5-dehydroge 87.8 0.84 1.8E-05 43.8 5.0 35 20-59 125-160 (289)
479 PF03807 F420_oxidored: NADP o 87.8 1 2.2E-05 34.9 4.7 32 23-59 1-36 (96)
480 PLN02172 flavin-containing mon 87.8 0.66 1.4E-05 47.8 4.4 34 21-59 204-237 (461)
481 PRK11880 pyrroline-5-carboxyla 87.6 0.79 1.7E-05 43.4 4.7 34 21-59 2-38 (267)
482 TIGR02964 xanthine_xdhC xanthi 87.6 0.98 2.1E-05 42.1 5.1 36 19-59 98-133 (246)
483 PLN02256 arogenate dehydrogena 87.5 0.94 2E-05 43.8 5.1 35 20-59 35-69 (304)
484 PRK12779 putative bifunctional 87.4 0.8 1.7E-05 51.4 5.2 35 20-59 446-480 (944)
485 COG0240 GpsA Glycerol-3-phosph 87.4 0.9 2E-05 43.8 4.8 34 22-60 2-35 (329)
486 PRK00258 aroE shikimate 5-dehy 87.4 0.96 2.1E-05 43.1 5.1 35 20-59 122-157 (278)
487 cd01483 E1_enzyme_family Super 87.3 1.1 2.3E-05 38.0 4.8 31 23-58 1-32 (143)
488 COG0287 TyrA Prephenate dehydr 87.3 1 2.2E-05 42.8 5.2 36 20-60 2-37 (279)
489 TIGR02356 adenyl_thiF thiazole 87.2 1.1 2.4E-05 40.5 5.0 34 20-58 20-54 (202)
490 PRK01390 murD UDP-N-acetylmura 87.0 0.79 1.7E-05 47.3 4.6 33 21-58 9-41 (460)
491 PRK08017 oxidoreductase; Provi 86.9 1.1 2.3E-05 41.9 5.1 33 22-59 3-36 (256)
492 PRK00683 murD UDP-N-acetylmura 86.9 0.82 1.8E-05 46.5 4.6 33 22-59 4-36 (418)
493 cd05213 NAD_bind_Glutamyl_tRNA 86.9 0.94 2E-05 44.0 4.8 35 20-59 177-212 (311)
494 PRK08644 thiamine biosynthesis 86.8 1.1 2.4E-05 40.8 4.9 33 21-58 28-61 (212)
495 TIGR03169 Nterm_to_SelD pyridi 86.7 1.6 3.4E-05 43.4 6.4 36 23-60 1-36 (364)
496 PRK00536 speE spermidine synth 86.7 0.7 1.5E-05 43.4 3.6 39 14-59 66-104 (262)
497 COG2085 Predicted dinucleotide 86.7 0.94 2E-05 40.6 4.2 32 22-58 2-33 (211)
498 PLN02494 adenosylhomocysteinas 86.5 1.1 2.5E-05 45.4 5.2 34 21-59 254-287 (477)
499 PRK05562 precorrin-2 dehydroge 86.5 1.2 2.6E-05 40.7 4.9 33 20-57 24-56 (223)
500 PF07991 IlvN: Acetohydroxy ac 86.4 1.6 3.4E-05 37.5 5.2 34 21-59 4-37 (165)
No 1
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=100.00 E-value=6.8e-48 Score=374.35 Aligned_cols=328 Identities=47% Similarity=0.772 Sum_probs=288.0
Q ss_pred HHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHcC---ChhhhcccHHHHHHHcCCCHHHH
Q 043512 139 SLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAG---LFNLTARSLEEELIDARLSPLLM 215 (487)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~ 215 (487)
.+++.++++||||.++.+.+.+++..+++|.++|..+....+|.++.+++...+ +..+...++.++|++.++++.|+
T Consensus 7 ~~~~~~kllWRYG~sp~r~~~~v~~~l~kFl~iY~~q~~~~~F~sv~~l~~~lg~~~~~~~t~~t~~e~L~~~gi~~~fi 86 (368)
T PF07156_consen 7 SWWNILKLLWRYGLSPIRMQNLVKSTLDKFLKIYELQEPGFPFSSVEELLSALGGDDFLNLTKVTGEEYLKENGISERFI 86 (368)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhcccCCCCcCCHHHHHHHhCChHHHHHHHHHHHHHHHHCCCCHHHH
Confidence 678999999999999999999999999999999997767788999999999988 77789999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHhhhcCCCCceEeecchHHHHHHHHHhcCCeEEeCCceEEE-EEeCCE---EEEEE
Q 043512 216 QELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMAAGLINRSDVALHLHEEIESI-SYLREY---YELNS 291 (487)
Q Consensus 216 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I-~~~~~~---v~V~~ 291 (487)
++++.+.+++||||+.+++++.++++++....|.|.++||+.+|+++|++..|+++ ++++|++| ...+++ +.|..
T Consensus 87 ~Elv~a~tRvNYgQ~~~i~a~~G~vSla~a~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~ 165 (368)
T PF07156_consen 87 NELVQAATRVNYGQNVNIHAFAGLVSLAGATGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRSSDGYSLYEVTY 165 (368)
T ss_pred HHHHHhheEeecccccchhhhhhheeeeeccCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEeccCCCceeEEEEE
Confidence 99999999999999988999999999998778899999999999999999999999 99999999 333332 35544
Q ss_pred cc--C-ceEecCEEEEccCCCCCC--e---eecCCCCCCCcCeEEEEEEEeeCCcCcccccCCCCCCCC-ceeEeccCCC
Q 043512 292 TK--G-NSYTCQITVVATPLDELN--L---HFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIP-ELVATIEDPD 362 (487)
Q Consensus 292 ~~--G-~~~~ad~VV~a~~~~~~~--~---~l~p~~~~~~~~~~~~~~~~~~~~l~~~y~g~~~~~~~~-~~i~~~~~~~ 362 (487)
.+ + ..-.+|.||+|+|++... + .+.|+.+.+.+++++.+.+++.+.+++.|||++....+| ..|+|++.++
T Consensus 166 ~~~~~~~~~~yD~VVIAtPl~~~~snI~~~~~~~~i~~~~~~Y~~l~vTlv~~~lnp~yFgl~~~~~~P~~~IlTt~~~~ 245 (368)
T PF07156_consen 166 KSSSGTESDEYDIVVIATPLQQSFSNITFINFDPPIDIPPRPYVHLHVTLVAGRLNPSYFGLPPPSKVPLETILTTENPD 245 (368)
T ss_pred ecCCCCccccCCEEEECCCcccccCCccccCCCCCCccCCCCcEEEEEEEEeccCCHhhcCCCCcccCCcceEEEeCCCC
Confidence 33 2 234579999999998654 4 355555556678999999999999999999999888899 6888887777
Q ss_pred CCeeEeeec----cccCCCCcEEEeccCCCCCHHHHhhhcccCCceEEEeccCCCCCCCCCCCCCceeeCCceeeecchh
Q 043512 363 LPFTCISVL----KQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILDGRHLYYVNAFE 438 (487)
Q Consensus 363 ~~~~~i~~~----~~~~~~~~~~~~~s~~~l~~~~l~~~f~~~~~~~~~~w~~yp~~~~~~~~~p~~l~g~~~~~~~~~~ 438 (487)
++++++... .....++++||+||++++++++|+++|....++.+++|.+||.+.||..++||+|+ +|+||+|++|
T Consensus 246 ~~~~s~~~~~~~~~~~~~~~~vyKIFS~~~Lt~~~L~~lF~~~~~~~~~~W~AYP~~~p~~~~~~~~L~-~glyY~n~iE 324 (368)
T PF07156_consen 246 LPFNSISIVKSVNRKTPKGEYVYKIFSPEPLTDEFLSQLFSSYSEVKRKEWLAYPHYSPPEKFPPFKLH-DGLYYTNAIE 324 (368)
T ss_pred CCCcccccccccCCCCCCCccEEEecCCCcCCHHHHHHHhhccCceeeeeEeCCCCCCCCCCCCCeEee-CCeeEchhHH
Confidence 877766544 23456899999999999999999999998888899999999999999999999996 4999999999
Q ss_pred hhHHHHhHHHHHHHHHHHHHHhhhhcCCCC
Q 043512 439 NAASTMETSAVAAENVARLILSRFFSKPSV 468 (487)
Q Consensus 439 ~~~s~~~~~~~~g~~~a~~i~~~l~~~~~~ 468 (487)
+++|+||+++|+|||+|.++.++|....-.
T Consensus 325 ~~aStME~sai~akNvA~L~~~~~~~~~~~ 354 (368)
T PF07156_consen 325 SAASTMETSAIAAKNVALLIYDRWNGDTDK 354 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999876433
No 2
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=3.3e-31 Score=275.20 Aligned_cols=382 Identities=19% Similarity=0.225 Sum_probs=240.2
Q ss_pred EEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCCCCC-
Q 043512 24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKPKD- 102 (487)
Q Consensus 24 VvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~~~- 102 (487)
|||||||++||+||.+|++ +|++|+|+||++++|||++|+..+|+.||.|++++..+. .+.++++.+|++...
T Consensus 1 vvVIGaG~~GL~aA~~La~-----~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~-~~~~l~~~lg~~l~~~ 74 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAA-----AGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITMPE-ALEELFALAGRDLADY 74 (502)
T ss_pred CEEECcCHHHHHHHHHHHh-----CCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEcccc-HHHHHHHHcCCChhhe
Confidence 6999999999999999999 999999999999999999999999999999999988653 355788888854321
Q ss_pred -C-CCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCCC
Q 043512 103 -P-PSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPV 180 (487)
Q Consensus 103 -~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (487)
. ...+..+.+.+.+|+.+.+..+. ..+.+++..+.+ .+...+.++++.....+......+.. .+
T Consensus 75 l~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~l~~~~p---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 140 (502)
T TIGR02734 75 VELVPLDPFYRLCWEDGSQLDVDNDQ----EELEAQIARFNP---------GDVAGYRRFLDYAERVYREGYRKLGY-VP 140 (502)
T ss_pred EEEEECCCceEEECCCCCEEEecCCH----HHHHHHHHHhCc---------ccHHHHHHHHHHHHHHHHHHHHHHhh-CC
Confidence 1 11112334445556666653211 112222222222 13345566666555555432222111 12
Q ss_pred CCCHHHHHHH---cCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHHHhhhcCCCCceEeecch
Q 043512 181 FESVDEMLKW---AGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGAVSLAGSGGGLWAVEGGN 256 (487)
Q Consensus 181 ~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~g~~~~~gG~ 256 (487)
+.+..+++.. .........++.+++++...++.+. .++.. ....++.+. +.++++.++.+.....|.|++.||+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~-~~l~~-~~~~~g~~p~~~~~~~~l~~~~~~~~g~~~~~gG~ 218 (502)
T TIGR02734 141 FLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLR-QAFSF-HALFLGGNPFRTPSIYALISALEREWGVWFPRGGT 218 (502)
T ss_pred CCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHH-HHhcc-cceeeccCcccchHHHHHHHHHHhhceEEEcCCCH
Confidence 3444444321 1112234577888887655444432 22221 112345444 5777777777666667899999999
Q ss_pred HHHHHHHHH---hcCCeEEeCCceEEEEEeCCE-EEEEEccCceEecCEEEEccCCCCCCeeecCCC--C----CCCcCe
Q 043512 257 WQMAAGLIN---RSDVALHLHEEIESISYLREY-YELNSTKGNSYTCQITVVATPLDELNLHFSPPI--S----IPERKL 326 (487)
Q Consensus 257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~a~~~~~~~~~l~p~~--~----~~~~~~ 326 (487)
+.++++|.+ +.|++|+++++|++|..++++ ++|++.+|+++.||.||+|+++..+...+.++. + ....+.
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~ 298 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRK 298 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccC
Confidence 999999976 459999999999999988776 588898998899999999999876543333321 1 122344
Q ss_pred EEEEEEEeeCCcCcccccCCCCC-CCCceeEeccCCCCCeeEeeeccccCCCCcEEEeccCCCCCHHHHhhhcccCCceE
Q 043512 327 QHTHATFVRGALNPAYFGLDGVS-KIPELVATIEDPDLPFTCISVLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETI 405 (487)
Q Consensus 327 ~~~~~~~~~~~l~~~y~g~~~~~-~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~l~~~~l~~~f~~~~~~~ 405 (487)
+.+.+.++ .|++++... . .+...+|++.+..++ ++.+.+++.... .
T Consensus 299 ~~s~s~~~------~~lgl~~~~~~---------~~~~~~~~~~~~~~~----------------~~~~~~~~~~g~--~ 345 (502)
T TIGR02734 299 RPSPSLFV------LYFGLLGVDGH---------WPQLAHHTLCFGPRY----------------KELFDEIFRKGR--L 345 (502)
T ss_pred CcCCeeeE------EEEeeccccCc---------CCCcCceeEecCcCH----------------HHHHHHHhcCCC--C
Confidence 55677787 899998421 1 234557777665443 455666665332 2
Q ss_pred EEeccCCCCCCCCC----CCCCceeeCCceeeecchh-hh-HHHHhHHHHHHHHHHHHHHhhhhcCC
Q 043512 406 RINWGAYPHYKAPE----VFAPFILDGRHLYYVNAFE-NA-ASTMETSAVAAENVARLILSRFFSKP 466 (487)
Q Consensus 406 ~~~w~~yp~~~~~~----~~~p~~l~g~~~~~~~~~~-~~-~s~~~~~~~~g~~~a~~i~~~l~~~~ 466 (487)
+.++..|. +.|+ +.+| +|+.++++.... .. ...-+|.. ..+++++.|++++++..
T Consensus 346 ~~~p~~~v--~~~s~~dp~~aP---~G~~~~~~~~~~~~~~~~~~~~~~-~k~~~~~~il~~l~~~~ 406 (502)
T TIGR02734 346 AEDPSLYL--HRPTVTDPSLAP---PGCENLYVLAPVPHLGTADVDWSV-EGPRYRDRILAYLEERA 406 (502)
T ss_pred CCCCcEEE--EcCCCCCCCCCC---CCCccEEEEEeCCCCCCCCCCcHH-HHHHHHHHHHHHHHHhc
Confidence 33444443 2232 4677 676665542211 11 11224654 46779999999998873
No 3
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=4.9e-28 Score=248.30 Aligned_cols=320 Identities=16% Similarity=0.192 Sum_probs=207.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcC-C
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLN-L 98 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg-l 98 (487)
+.+||||||||++||+||.+|++ +|++|+||||++++|||++++..+|++||+|++++..+... .++++++ +
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~-----~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~~~~--~~~~~l~~l 74 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLAR-----AGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDPG--PLFRELGNL 74 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHh-----CCCEEEEEEecCCCCcceEEEeccceEeccCcceeecCchH--HHHHHhccC
Confidence 46899999999999999999999 99999999999999999999999999999999999888765 5677777 5
Q ss_pred CCCCCC--CCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcC-ChHHHhHHHHHHHHHHHHhhhhc
Q 043512 99 KPKDPP--SSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGL-SLLRMESFTESAVDKFLKYYESF 175 (487)
Q Consensus 99 ~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 175 (487)
...... ..+..+++.+.+|..+....+. ......+.++.+ +...+.+++....+.+......+
T Consensus 75 ~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~--------------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 140 (487)
T COG1233 75 DADGLDLLPPDPAYRVFLPDGDAIDVYTDL--------------EATAELLESLEPGDGEALARYLRLLARLYELLAALL 140 (487)
T ss_pred cccceeeeccCCceeeecCCCCEEEecCCH--------------HHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhc
Confidence 443221 1123344444456666654321 111122233332 55566666665555555555533
Q ss_pred cCCCCC------CCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CCC-CcchHHHHHhhhcCCC
Q 043512 176 ETRPVF------ESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYG-QSL-SISGLAGAVSLAGSGG 247 (487)
Q Consensus 176 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g-~~~-~~~~~~~~~~~~~~~~ 247 (487)
...... .....++ .+......+..+++... +.....+.++... ..++ .+. ..++++.++.......
T Consensus 141 ~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~-f~~~~~r~~~~~~--~~~~~~~p~~~~a~~~~~~~~~~~~ 214 (487)
T COG1233 141 LAPPRSELLLVPDTPERLL---RLLGFSLTSALDFFRGR-FGSELLRALLAYS--AVYGGAPPSTPPALYLLLSHLGLSG 214 (487)
T ss_pred CCCchhhhhhccccHHHHH---HHHHHhhhhHHHHHHHH-hcCHHHHHHHHHH--HHhcCCCCCchhHHHHHHHHhcccC
Confidence 221111 1111111 12233445566666655 4433333322222 2232 333 4457788888888889
Q ss_pred CceEeecchHHHHHHHHH---hcCCeEEeCCceEEEEEeCCE-EEEEEccCceEecCEEEEccCCCCCCeeecCCCC--C
Q 043512 248 GLWAVEGGNWQMAAGLIN---RSDVALHLHEEIESISYLREY-YELNSTKGNSYTCQITVVATPLDELNLHFSPPIS--I 321 (487)
Q Consensus 248 g~~~~~gG~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~a~~~~~~~~~l~p~~~--~ 321 (487)
|.++++||+++|+++|++ +.|++|+++++|++|..++++ +++++.+|+.+++|.||+++.+ .....+.+... .
T Consensus 215 G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~-~~~~~l~~~~~~~~ 293 (487)
T COG1233 215 GVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP-ALLARLLGEARRPR 293 (487)
T ss_pred CeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch-hhhhhhhhhhhhhc
Confidence 999999999999999976 469999999999999998875 6888888878999999999999 32222322221 1
Q ss_pred CCcCeEEEEEEEeeCCcCcccccCCCCCCCCceeEeccCCCCCeeEeeeccccCCCCcEEEeccCCCCCHHHHhhhccc
Q 043512 322 PERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLKQHDENDFTYKIFSRKPMTDTLLDDIFSV 400 (487)
Q Consensus 322 ~~~~~~~~~~~~~~~~l~~~y~g~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~l~~~~l~~~f~~ 400 (487)
....+...++++. .|+|++... +...+|++.+..+. .+++.+.|..
T Consensus 294 ~~~~~~~~~~al~------~~~g~~~~~-----------~~~~~~~~~~~~~~----------------~~~~~~~~~~ 339 (487)
T COG1233 294 YRGSYLKSLSALS------LYLGLKGDL-----------LPLAHHTTILLGDT----------------REQIEEAFDD 339 (487)
T ss_pred cccchhhhhHHHH------hccCCCCCC-----------cchhhcceEecCCc----------------HHHHHHHhhh
Confidence 2233344455665 688887641 23445555555553 6777888765
No 4
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.96 E-value=2.8e-27 Score=243.45 Aligned_cols=399 Identities=16% Similarity=0.208 Sum_probs=226.2
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCC-CCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSK-NWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKP 100 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~-~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~ 100 (487)
++|+|||||++||+||++|++...+ ..|++|+|||+++++|||++|.+.+|+.+|.|+++++..+..+.++++++|+..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~ 81 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEE 81 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCcc
Confidence 5799999999999999999982100 014899999999999999999999999999999999888887889999999876
Q ss_pred CCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCCC
Q 043512 101 KDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPV 180 (487)
Q Consensus 101 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (487)
........ ..+.+.+|....+. .+....++.....+. +... .. ...++..+...+..
T Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~p---~~~~~~~p~~~~~~~-------~~~~--~~-------~~~~~~~~~~~~~~--- 138 (463)
T PRK12416 82 EMVYNETG-ISYIYSDNTLHPIP---SDTIFGIPMSVESLF-------SSTL--VS-------TKGKIVALKDFITK--- 138 (463)
T ss_pred ceecCCCC-ceEEEECCeEEECC---CCCeecCCCChHHhh-------cCCc--CC-------HHHHHHhhhhhccC---
Confidence 54322211 12333444322221 111111111100000 0000 00 00011111110000
Q ss_pred CCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchH---HHHHhhh-------------
Q 043512 181 FESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGL---AGAVSLA------------- 243 (487)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~---~~~~~~~------------- 243 (487)
......+.++.+|+.+. +.+.+.+.++.++....|+.+. +++.- ..+..+.
T Consensus 139 -----------~~~~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~ 206 (463)
T PRK12416 139 -----------NKEFTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEEN 206 (463)
T ss_pred -----------CCCCCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHh
Confidence 00012467889998864 4577777788888887787665 45432 1111110
Q ss_pred ------cCCCCceEeecchHHHHHHHHHhcC-CeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC-eee
Q 043512 244 ------GSGGGLWAVEGGNWQMAAGLINRSD-VALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN-LHF 315 (487)
Q Consensus 244 ------~~~~g~~~~~gG~~~l~~~l~~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~-~~l 315 (487)
......++++||+++++++|++.++ ++|+++++|++|+.+++++.|++.+|+++.||+||+|+|+.... +.+
T Consensus 207 ~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~ 286 (463)
T PRK12416 207 KKQFQSAGNKKFVSFKGGLSTIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAETLLQ 286 (463)
T ss_pred hhccCCCCCCceEeeCCCHHHHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHhhcC
Confidence 0011255899999999999999874 58999999999999988899988888889999999999987643 333
Q ss_pred cCCCCCCCcCeEEEEEEEeeCCcCcccccCCCCC-CCCc-e--eEeccCCCCCeeEeeeccc-----cCCCCcEEEec--
Q 043512 316 SPPISIPERKLQHTHATFVRGALNPAYFGLDGVS-KIPE-L--VATIEDPDLPFTCISVLKQ-----HDENDFTYKIF-- 384 (487)
Q Consensus 316 ~p~~~~~~~~~~~~~~~~~~~~l~~~y~g~~~~~-~~~~-~--i~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~-- 384 (487)
.|+++.....+.+. +... .|++++... .+|. . .+..+........+.+... ..+...+...|
T Consensus 287 ~~~l~~~~~~~~~~-~~~~------v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~ 359 (463)
T PRK12416 287 SNELNEQFHTFKNS-SLIS------IYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYK 359 (463)
T ss_pred CcchhHHHhcCCCC-ceEE------EEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeC
Confidence 34332222222211 1122 344554321 1221 1 1111111111122222111 01111222221
Q ss_pred ------------cCCCC---CHHHHhhhcccCC---ceEEEecc-CCCCCCCCC-----CCCCce-eeCCceeeecchhh
Q 043512 385 ------------SRKPM---TDTLLDDIFSVRK---ETIRINWG-AYPHYKAPE-----VFAPFI-LDGRHLYYVNAFEN 439 (487)
Q Consensus 385 ------------s~~~l---~~~~l~~~f~~~~---~~~~~~w~-~yp~~~~~~-----~~~p~~-l~g~~~~~~~~~~~ 439 (487)
+++++ ..++|.++|+... ....++|. ++|.+.... .+.+.. -..++++++ |...
T Consensus 360 ~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~a-G~~~ 438 (463)
T PRK12416 360 STNPVYETIKNYSEEELVRVALYDIEKSLGIKGEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLA-GASY 438 (463)
T ss_pred CCCCCchhhhcCCHHHHHHHHHHHHHHHhCCCCCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEe-cccc
Confidence 12222 2577888887442 35568896 788665432 010100 011356655 3233
Q ss_pred hHHHHhHHHHHHHHHHHHHHhhhh
Q 043512 440 AASTMETSAVAAENVARLILSRFF 463 (487)
Q Consensus 440 ~~s~~~~~~~~g~~~a~~i~~~l~ 463 (487)
.+..|+.+..+|+++|+.|++.++
T Consensus 439 ~g~~i~~ai~sg~~aA~~i~~~~~ 462 (463)
T PRK12416 439 YGVGIGACIGNGKNTANEIIATLN 462 (463)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhh
Confidence 344699999999999999998754
No 5
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.96 E-value=8.4e-27 Score=241.47 Aligned_cols=300 Identities=17% Similarity=0.194 Sum_probs=183.7
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecC--ChhHHHHHHHcCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPK--NYHTVNFTKLLNL 98 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~--~~~~~~~~~~lgl 98 (487)
..||||||||++||+||..|++ +|++|+||||++++|||+++++.+|+.||.|++++.+. ......+++++|+
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~-----~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~ 75 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAK-----RGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGI 75 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHH-----CCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCC
Confidence 3689999999999999999999 99999999999999999999999999999999998763 3335578899998
Q ss_pred CCCCCCCCCCCceEEEEcC-CeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccC
Q 043512 99 KPKDPPSSEDSTAFGIWDG-SKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFET 177 (487)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (487)
........+..+.+.+.+| ..+.+..+. ..+.+++...++. + .+++....+.+......+..
T Consensus 76 ~~~~~~~~d~~~~~~~~dg~~~~~~~~d~----~~~~~~l~~~~p~---------~----~~~~~~~~~~~~~~~~~~~~ 138 (492)
T TIGR02733 76 PLPEAKILDPACAVDLPDGSEPIPLWHDP----DRWQKERERQFPG---------S----ERFWQLCSQLHQSNWRFAGR 138 (492)
T ss_pred CCcccccCCCCcEEEECCCceEeeeecCH----HHHHHHHHHHCCC---------h----HHHHHHHHHHHHHHHHHhhc
Confidence 7432111222234555566 345443221 1122222222211 1 11222222222221111111
Q ss_pred CC--CCCCHHHHHHH---cC-----ChhhhcccHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCCC-CcchHHHH--Hhhh
Q 043512 178 RP--VFESVDEMLKW---AG-----LFNLTARSLEEELIDAR-LSPLLMQELVTIITRINYGQSL-SISGLAGA--VSLA 243 (487)
Q Consensus 178 ~~--~~~~~~~~~~~---~~-----~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~--~~~~ 243 (487)
.+ ...+..++... .. .......++.+++++.+ ......+.++........+.+. +.++++++ +.+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (492)
T TIGR02733 139 DPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMA 218 (492)
T ss_pred CCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhcc
Confidence 11 12223332210 00 11234578889998764 2233333444433322223334 46666653 3333
Q ss_pred cCCCCceEeecchHHHHHHHHHhc---CCeEEeCCceEEEEEeCCEE-EEEEccC-----ceEecCEEEEccCCCCCCee
Q 043512 244 GSGGGLWAVEGGNWQMAAGLINRS---DVALHLHEEIESISYLREYY-ELNSTKG-----NSYTCQITVVATPLDELNLH 314 (487)
Q Consensus 244 ~~~~g~~~~~gG~~~l~~~l~~~~---G~~i~~~~~V~~I~~~~~~v-~V~~~~G-----~~~~ad~VV~a~~~~~~~~~ 314 (487)
....|.|+++||+++|+++|++.+ |++|+++++|++|..+++++ +|.+.+| +++.||+||+|+|+..+...
T Consensus 219 ~~~~G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~l 298 (492)
T TIGR02733 219 QAPHGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLEL 298 (492)
T ss_pred ccCCCceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHh
Confidence 344678999999999999998754 99999999999999987754 5555444 57899999999999865432
Q ss_pred ecC-CCCC----CCcCeEEEEEEEeeCCcCcccccCCCC
Q 043512 315 FSP-PISI----PERKLQHTHATFVRGALNPAYFGLDGV 348 (487)
Q Consensus 315 l~p-~~~~----~~~~~~~~~~~~~~~~l~~~y~g~~~~ 348 (487)
+.+ .++. ...+.+.+.+.++ .|++++..
T Consensus 299 l~~~~~~~~~~~~~~~~~~s~~~~~------v~l~~~~~ 331 (492)
T TIGR02733 299 LGPLGLPPGYRKRLKKLPEPSGAFV------FYLGVKRA 331 (492)
T ss_pred cCcccCCHHHHHHHhcCCCCCceEE------EEEeeccc
Confidence 321 2221 1233445566777 78998874
No 6
>PLN02268 probable polyamine oxidase
Probab=99.95 E-value=1e-26 Score=237.45 Aligned_cols=249 Identities=18% Similarity=0.192 Sum_probs=149.7
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecC--ChhHHHHHHHcCCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPK--NYHTVNFTKLLNLK 99 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~--~~~~~~~~~~lgl~ 99 (487)
++|+|||||++||+||+.|.+ +|++|+|||+++++|||++|....|+.+|+|++|++.. +.++.++++++|+.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~-----~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~ 75 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHD-----ASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLP 75 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHh-----CCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCc
Confidence 479999999999999999999 99999999999999999999888899999999999864 34577999999986
Q ss_pred CCCCCCCCCCceEEEEcC-CeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCC
Q 043512 100 PKDPPSSEDSTAFGIWDG-SKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETR 178 (487)
Q Consensus 100 ~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (487)
......... +.+..+ ..+.+.. +....++....... .. .+.++.+ .......
T Consensus 76 ~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~----------~~~~~~~----~~~~~~~----- 128 (435)
T PLN02268 76 LYRTSGDNS---VLYDHDLESYALFD---MDGNQVPQELVTKV--GE----------TFERILE----ETEKVRD----- 128 (435)
T ss_pred eEeccCCcc---ccccccccccceec---CCCCCCCHHHHHHH--HH----------HHHHHHH----HHHHHHh-----
Confidence 543221111 111111 1111111 00001111100000 00 0000100 0000000
Q ss_pred CCCCCHHHHHHHcCChhhhcccHHHHHHHc----------CCCHHHHHHHHHHHHHhhcCCCC-CcchHHHHHhhhcCCC
Q 043512 179 PVFESVDEMLKWAGLFNLTARSLEEELIDA----------RLSPLLMQELVTIITRINYGQSL-SISGLAGAVSLAGSGG 247 (487)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~ 247 (487)
....+.++.+|+++. ++.+.+.+.++.. +...|+.++ +++...... .....+
T Consensus 129 ---------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~-~~~~~g 191 (435)
T PLN02268 129 ---------------EHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ-EELLEG 191 (435)
T ss_pred ---------------ccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC-ccccCC
Confidence 011233444443221 1222222222222 123455554 344322100 000112
Q ss_pred CceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC---eeecCCCCC
Q 043512 248 GLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN---LHFSPPISI 321 (487)
Q Consensus 248 g~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~---~~l~p~~~~ 321 (487)
+...+.+|+++++++|++ +++|+++++|++|..+++++.|++.+|+++.||+||+|+|+..+. +.|.|++|.
T Consensus 192 ~~~~~~~G~~~l~~~l~~--~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~ 266 (435)
T PLN02268 192 GHGLMVRGYDPVINTLAK--GLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPE 266 (435)
T ss_pred CceeecCCHHHHHHHHhc--cCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCH
Confidence 345688899999999976 457999999999999888899999889889999999999999753 567777653
No 7
>PLN02529 lysine-specific histone demethylase 1
Probab=99.95 E-value=6.4e-26 Score=238.04 Aligned_cols=246 Identities=19% Similarity=0.277 Sum_probs=153.4
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeC--C--eEecccceeEecCChh-HHHH
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS--G--QTFEAGASILHPKNYH-TVNF 92 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~--g--~~~d~G~~~~~~~~~~-~~~~ 92 (487)
....+||+|||||++||+||..|++ +|++|+|+|+++++|||+.|...+ | ..+|+|++|+++...+ +..+
T Consensus 157 ~~~~~~v~viGaG~aGl~aA~~l~~-----~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~l 231 (738)
T PLN02529 157 EGTEGSVIIVGAGLAGLAAARQLLS-----FGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVL 231 (738)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHH-----cCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHH
Confidence 3456899999999999999999999 999999999999999999999875 3 4899999999987654 7789
Q ss_pred HHHcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhh
Q 043512 93 TKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYY 172 (487)
Q Consensus 93 ~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (487)
.+++|+........ +.+...+|....... ...+. .......+++..+.
T Consensus 232 a~~lgl~~~~~~~~---~~~~~~~G~~v~~~~---------~~~~~--------------------~~~~~~l~~~~~l~ 279 (738)
T PLN02529 232 ARQLSIPLHKVRDN---CPLYKPDGALVDKEI---------DSNIE--------------------FIFNKLLDKVTELR 279 (738)
T ss_pred HHHhCCCccccCCC---ceEEeCCCcCcchhh---------hhhHH--------------------HHHHHHHHHHHHHH
Confidence 99999876543221 124444554432210 00000 00011111111111
Q ss_pred hhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcC------CCHHHHHHHHHHHHH-hhcCCCCCcchHHHHHhhh--
Q 043512 173 ESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDAR------LSPLLMQELVTIITR-INYGQSLSISGLAGAVSLA-- 243 (487)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~-- 243 (487)
..... ...+.++.+++++.. +++.. .+++..... ..+...-.++.+....+..
T Consensus 280 ~~~~~-----------------~~~d~Sl~~~le~~~~~~~~~~t~~e-~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~ 341 (738)
T PLN02529 280 QIMGG-----------------FANDISLGSVLERLRQLYGVARSTEE-RQLLDWHLANLEYANAGCLSDLSAAYWDQDD 341 (738)
T ss_pred Hhccc-----------------CccCCCHHHHHHHHHhhhccCCCHHH-HHHHHHHHHHhceecCCChHHhhhhHhhhcc
Confidence 11000 112334455543321 22211 123322221 1122221222222222211
Q ss_pred --cCCCCceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC---CeeecCC
Q 043512 244 --GSGGGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL---NLHFSPP 318 (487)
Q Consensus 244 --~~~~g~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~---~~~l~p~ 318 (487)
+.....+.+.||+++|+++|++.+ .|++|++|++|..++++|.|++ +++++.||+||+|+|+..+ .+.|.|+
T Consensus 342 ~~e~~G~~~~i~GG~~~Li~aLA~~L--~IrLnt~V~~I~~~~dGVtV~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~Pp 418 (738)
T PLN02529 342 PYEMGGDHCFLAGGNWRLINALCEGV--PIFYGKTVDTIKYGNDGVEVIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPE 418 (738)
T ss_pred ccccCCceEEECCcHHHHHHHHHhcC--CEEcCCceeEEEEcCCeEEEEE-CCEEEEcCEEEECCCHHHHHhccccCCCC
Confidence 112235689999999999999865 6999999999999999998876 4458999999999999975 4678898
Q ss_pred CCC
Q 043512 319 ISI 321 (487)
Q Consensus 319 ~~~ 321 (487)
+|.
T Consensus 419 LP~ 421 (738)
T PLN02529 419 LPR 421 (738)
T ss_pred CCH
Confidence 764
No 8
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.95 E-value=3.5e-26 Score=234.98 Aligned_cols=251 Identities=18% Similarity=0.207 Sum_probs=166.6
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCC--CeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWH--PRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLK 99 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G--~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~ 99 (487)
++|+|||||++||+||+.|++ .| ++|+|||+++++|||++|...+|+.+|.|+++++..++.+.++++++|+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~-----~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~ 75 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHK-----KGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLE 75 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHH-----hCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCc
Confidence 479999999999999999999 88 89999999999999999999999999999998888777788999999987
Q ss_pred CCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCC
Q 043512 100 PKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRP 179 (487)
Q Consensus 100 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (487)
......... ..+.+.+|+.+.+.. .....++..+..+. .+++- ... .+......
T Consensus 76 ~~~~~~~~~-~~~~~~~g~~~~~p~---~~~~~~~~~~~~~~-----~~~~~-------~~~----~~~~~~~~------ 129 (451)
T PRK11883 76 DELVANTTG-QSYIYVNGKLHPIPP---GTVMGIPTSIAPFL-----FAGLV-------SPI----GKLRAAAD------ 129 (451)
T ss_pred cceecCCCC-cceEEECCeEEECCC---CCeeccCCCchhhh-----cCCCC-------CHH----HHHHhhCc------
Confidence 543221111 113344555433211 00000110000000 00000 000 00000000
Q ss_pred CCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHH---Hhh-------------
Q 043512 180 VFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGA---VSL------------- 242 (487)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~---~~~------------- 242 (487)
+ .........+.++.+|+.+ .+++.+.+.++.++....|+.+. .+++...+ ..+
T Consensus 130 -~-------~~~~~~~~~~~s~~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 200 (451)
T PRK11883 130 -L-------RPPRWKPGQDQSVGAFFRR-RFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRK 200 (451)
T ss_pred -c-------cCCCCCCCCCcCHHHHHHH-hccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHh
Confidence 0 0000112345789999976 45677777777888777787765 45543211 100
Q ss_pred --hc---CCCC-ceEeecchHHHHHHHHHhcCC-eEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC
Q 043512 243 --AG---SGGG-LWAVEGGNWQMAAGLINRSDV-ALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN 312 (487)
Q Consensus 243 --~~---~~~g-~~~~~gG~~~l~~~l~~~~G~-~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~ 312 (487)
.. .... .++++||+++++++|++.++. +|+++++|++|..+++++.|.+.+|+++.||+||+|+|+....
T Consensus 201 ~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~ 277 (451)
T PRK11883 201 ALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLP 277 (451)
T ss_pred hccccCCCCCCceEeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHH
Confidence 00 0122 357999999999999998866 8999999999999888888888899899999999999998654
No 9
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.95 E-value=3e-25 Score=229.60 Aligned_cols=298 Identities=15% Similarity=0.142 Sum_probs=186.6
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecC----Ch-hHHHHHHHc
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPK----NY-HTVNFTKLL 96 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~----~~-~~~~~~~~l 96 (487)
+||||||||++||+||..|++ +|++|+|+||++.+||+++++..+|+.||.|++++... .. .+.+.++.+
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~-----~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~ 75 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAV-----KGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAV 75 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHH-----CCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHc
Confidence 589999999999999999999 99999999999999999999999999999999987632 11 233455555
Q ss_pred CCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhcc
Q 043512 97 NLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFE 176 (487)
Q Consensus 97 gl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (487)
+....... ....+.+.+.+|..+.+..+ ...+.+++.+.++. +...+++|++.....+.......
T Consensus 76 ~~~~~~~~-~~~~~~~~~~~g~~~~~~~d----~~~~~~~l~~~~P~---------~~~~~~~~~~~~~~~~~~~~~~~- 140 (493)
T TIGR02730 76 GRKLETIP-DPVQIHYHLPNGLNVKVHRE----YDDFIQELVAKFPH---------EKEGIRRFYDECWQVFNCLNSME- 140 (493)
T ss_pred CCcccccC-CCccEEEECCCCeeEeeecC----HHHHHHHHHHHCch---------hHHHHHHHHHHHHHHHHHHHhhh-
Confidence 54332211 11112233445655555322 11133333332222 33456666666554444322110
Q ss_pred CCCCCCCHHHHHH---H-----cCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-C-CCcchHHHHHhhhcC-
Q 043512 177 TRPVFESVDEMLK---W-----AGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQ-S-LSISGLAGAVSLAGS- 245 (487)
Q Consensus 177 ~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~-~-~~~~~~~~~~~~~~~- 245 (487)
.. .+..+..+.. . ..+......++.+++++...++.+. .++..... .++. + .++++.+..+.+...
T Consensus 141 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~-~~l~~~~~-~~~~~p~~~~p~~~~~~~~~~~~ 217 (493)
T TIGR02730 141 LL-SLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLL-KFIDIECF-CWSVVPADQTPMINAGMVFSDRH 217 (493)
T ss_pred hc-cccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHH-HHHHHHHH-hccCCCcccchhhhHHHhhcccc
Confidence 00 0111111110 0 0112233477788887765555443 23332222 2343 3 356766666554433
Q ss_pred CCCceEeecchHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCCCCeeecCCC--
Q 043512 246 GGGLWAVEGGNWQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDELNLHFSPPI-- 319 (487)
Q Consensus 246 ~~g~~~~~gG~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~~~~~l~p~~-- 319 (487)
..|.|++.||++.++++|.+ +.|++|+++++|++|..+++++ +|++.+|+++.||.||+|++++.+...+.|..
T Consensus 218 ~~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~ 297 (493)
T TIGR02730 218 YGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENL 297 (493)
T ss_pred cceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCcccc
Confidence 34789999999999999976 4599999999999999887665 88888998899999999999986644444432
Q ss_pred CC----CCcCeEEEEEEEeeCCcCcccccCCCC
Q 043512 320 SI----PERKLQHTHATFVRGALNPAYFGLDGV 348 (487)
Q Consensus 320 ~~----~~~~~~~~~~~~~~~~l~~~y~g~~~~ 348 (487)
+. .....+.+++.++ .|++++..
T Consensus 298 ~~~~~~~~~~~~~s~s~~~------~~l~l~~~ 324 (493)
T TIGR02730 298 PKKEKNWQRNYVKSPSFLS------LHLGVKAD 324 (493)
T ss_pred chhhHHHHhhccCCCceEE------EEEEecCc
Confidence 11 1133455667777 89999875
No 10
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.95 E-value=7.9e-26 Score=232.88 Aligned_cols=242 Identities=18% Similarity=0.202 Sum_probs=164.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCC----CCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNW----HPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLL 96 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~----G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~l 96 (487)
++||+|||||++||+||++|++ + |++|+|+|+++++|||++|...+|+.+|.|+++++..++.+.++++++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~-----~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~l 76 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEK-----EIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDL 76 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHh-----cCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHc
Confidence 4789999999999999999999 7 999999999999999999999999999999999999888788999999
Q ss_pred CCCCCCCCCCCCCceEEEEc-CCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhc
Q 043512 97 NLKPKDPPSSEDSTAFGIWD-GSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESF 175 (487)
Q Consensus 97 gl~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (487)
|+......... ...+.+.+ |....+. ... .+. .+... ..+.+ +.......+
T Consensus 77 gl~~~~~~~~~-~~~~~~~~~g~~~~~p----~~~----------~~~----~~~~~-----~~~~~----~~~~~~~~~ 128 (462)
T TIGR00562 77 GLEHVLVSDAT-GQRYVLVNRGKLMPVP----TKI----------APF----VKTGL-----FSLGG----KLRAGMDFI 128 (462)
T ss_pred CCCcccccCCC-CceEEEECCCceecCC----CCh----------HHH----hcCCC-----CCchh----hHHhhhhhc
Confidence 98654332111 11233333 4332221 000 000 00000 00000 000000000
Q ss_pred cCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHH--Hhhh---------
Q 043512 176 ETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGA--VSLA--------- 243 (487)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~--~~~~--------- 243 (487)
.. . ....+.++.+|+.+. +.+.+.+.++.++....|+.+. .+++...+ ++..
T Consensus 129 ~~-------------~--~~~~d~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~ 192 (462)
T TIGR00562 129 RP-------------A--SPGKDESVEEFVRRR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLIL 192 (462)
T ss_pred cC-------------C--CCCCCcCHHHHHHHh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHH
Confidence 00 0 011236788888765 4566677788888888887765 35543211 1000
Q ss_pred ---c--------------CCCC--ceEeecchHHHHHHHHHhcC-CeEEeCCceEEEEEeCCEEEEEEccCceEecCEEE
Q 043512 244 ---G--------------SGGG--LWAVEGGNWQMAAGLINRSD-VALHLHEEIESISYLREYYELNSTKGNSYTCQITV 303 (487)
Q Consensus 244 ---~--------------~~~g--~~~~~gG~~~l~~~l~~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV 303 (487)
. ...| .++++||+++++++|++.++ ++|+++++|++|..+++++.|++.+|+++.||+||
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI 272 (462)
T TIGR00562 193 GMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVV 272 (462)
T ss_pred HHHhhcccCccccccccccccCCceEecchhHHHHHHHHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEE
Confidence 0 0012 45799999999999999886 79999999999999888898988888889999999
Q ss_pred EccCCCCC
Q 043512 304 VATPLDEL 311 (487)
Q Consensus 304 ~a~~~~~~ 311 (487)
+|+|+...
T Consensus 273 ~t~P~~~~ 280 (462)
T TIGR00562 273 VTAPHKAA 280 (462)
T ss_pred ECCCHHHH
Confidence 99999865
No 11
>PLN02576 protoporphyrinogen oxidase
Probab=99.95 E-value=1.3e-25 Score=233.15 Aligned_cols=250 Identities=18% Similarity=0.230 Sum_probs=165.8
Q ss_pred CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCC-CCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHH
Q 043512 16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNW-HPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTK 94 (487)
Q Consensus 16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~-G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~ 94 (487)
...+..+||+|||||++||+||++|++ + |++|+|+|+++++|||++|.+.+|+.+|.|++++...+..+..+++
T Consensus 7 ~~~~~~~~v~IIGaGisGL~aA~~L~~-----~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~ 81 (496)
T PLN02576 7 SAAASSKDVAVVGAGVSGLAAAYALAS-----KHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQPSDPELTSAVD 81 (496)
T ss_pred ccccCCCCEEEECcCHHHHHHHHHHHH-----hcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhccCcHHHHHHHH
Confidence 344556799999999999999999999 9 9999999999999999999999999999999999987777666766
Q ss_pred HcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcch-hhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhh
Q 043512 95 LLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPF-VQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYE 173 (487)
Q Consensus 95 ~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (487)
. |+............++.+.+|+...+.. +...+ ...+.++.. ++.....
T Consensus 82 ~-gl~~~~~~~~~~~~~~~~~~g~~~~~p~----~~~~~~~~~~~~~~~------------------------~~~~~~~ 132 (496)
T PLN02576 82 S-GLRDDLVFPDPQAPRYVVWNGKLRPLPS----NPIDLPTFDLLSAPG------------------------KIRAGLG 132 (496)
T ss_pred c-CChhheecCCCCceEEEEECCEEEEcCC----ChHHhcCcCcCChhH------------------------HHHHhHH
Confidence 6 7654332211111234445555443321 11000 000000000 0000000
Q ss_pred hccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHH--Hhhh-------
Q 043512 174 SFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGA--VSLA------- 243 (487)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~--~~~~------- 243 (487)
.+.... . .....+.++.+|+.+. +++...+.++.++....|+.++ ++++...+ ++..
T Consensus 133 ~~~~~~-----------~-~~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~ 199 (496)
T PLN02576 133 AFGWKR-----------P-PPPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSI 199 (496)
T ss_pred HhhccC-----------C-CCCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcH
Confidence 000000 0 0012467899999875 6788888889999988888766 45543211 1100
Q ss_pred ---------c-----------------CCCCceEeecchHHHHHHHHHhcC-CeEEeCCceEEEEEeCCE-EEEEE--cc
Q 043512 244 ---------G-----------------SGGGLWAVEGGNWQMAAGLINRSD-VALHLHEEIESISYLREY-YELNS--TK 293 (487)
Q Consensus 244 ---------~-----------------~~~g~~~~~gG~~~l~~~l~~~~G-~~i~~~~~V~~I~~~~~~-v~V~~--~~ 293 (487)
. .....+.++||+++|+++|++.++ .+|++|++|++|+.++++ +.|++ .+
T Consensus 200 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~ 279 (496)
T PLN02576 200 IGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPE 279 (496)
T ss_pred HHHHHHhhhhhcccccccccccccccccCCeeEeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCC
Confidence 0 001247889999999999999987 789999999999988776 55543 35
Q ss_pred C-ceEecCEEEEccCCCCCC
Q 043512 294 G-NSYTCQITVVATPLDELN 312 (487)
Q Consensus 294 G-~~~~ad~VV~a~~~~~~~ 312 (487)
| +++.||+||+|+|+....
T Consensus 280 g~~~~~ad~VI~a~P~~~l~ 299 (496)
T PLN02576 280 GKVNVTAKAVVMTAPLYVVS 299 (496)
T ss_pred CceeEEeCEEEECCCHHHHH
Confidence 5 369999999999998653
No 12
>PRK07233 hypothetical protein; Provisional
Probab=99.94 E-value=4.6e-25 Score=225.53 Aligned_cols=243 Identities=18% Similarity=0.157 Sum_probs=162.4
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCCCCC
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKPKD 102 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~~~ 102 (487)
+|+|||||++||+||++|++ +|++|+|+|+++++||+++++..+|+.+|.|++++...++.+.++++++|+....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~-----~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~ 75 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK-----RGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLEDKL 75 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCCCce
Confidence 69999999999999999999 9999999999999999999999999999999999988888888999999986543
Q ss_pred CCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcC-ChHHHhHHHHHHHHHHHHhhhhccCCCCC
Q 043512 103 PPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGL-SLLRMESFTESAVDKFLKYYESFETRPVF 181 (487)
Q Consensus 103 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (487)
...... . ..+++|....+. +.. +. .++.. .. . +.....+..... ..
T Consensus 76 ~~~~~~-~-~~~~~~~~~~~~-----~~~----------~~----~~~~~~~~---~---~~~~~~~~~~~~---~~--- 122 (434)
T PRK07233 76 RWRETK-T-GYYVDGKLYPLG-----TPL----------EL----LRFPHLSL---I---DKFRLGLLTLLA---RR--- 122 (434)
T ss_pred eeccCc-e-EEEECCeEecCC-----CHH----------HH----HcCCCCCH---H---HHHHhHHHHHhh---hh---
Confidence 322111 1 122344322110 000 00 00000 00 0 000000000000 00
Q ss_pred CCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHH--HhhhcC------CCCceEe
Q 043512 182 ESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGA--VSLAGS------GGGLWAV 252 (487)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~--~~~~~~------~~g~~~~ 252 (487)
..........++.+|+.+.. .....+.++..++...++.++ ++++...+ +..... ....+++
T Consensus 123 --------~~~~~~~~~~s~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (434)
T PRK07233 123 --------IKDWRALDKVPAEEWLRRWS-GEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYL 193 (434)
T ss_pred --------cccccccccccHHHHHHHhc-CHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEecc
Confidence 00111234578889998764 355556678888887788766 46653222 221110 1236689
Q ss_pred ecchHHHHHHHHHhc---CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC
Q 043512 253 EGGNWQMAAGLINRS---DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN 312 (487)
Q Consensus 253 ~gG~~~l~~~l~~~~---G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~ 312 (487)
+||++.++++|++.+ |++|+++++|++|+.+++++.+.+.+|++++||+||+|+|+....
T Consensus 194 ~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~ 256 (434)
T PRK07233 194 EGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILA 256 (434)
T ss_pred CCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHHHH
Confidence 999999999998754 899999999999998888775555677789999999999987654
No 13
>PLN03000 amine oxidase
Probab=99.94 E-value=1.3e-24 Score=228.65 Aligned_cols=392 Identities=16% Similarity=0.153 Sum_probs=209.8
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeC----CeEecccceeEecCCh-hHHHH
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS----GQTFEAGASILHPKNY-HTVNF 92 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~----g~~~d~G~~~~~~~~~-~~~~~ 92 (487)
.....+|+|||||++||+||+.|++ .|++|+|+|+++++|||+.|.... ++.+|+|++|+++... ++..+
T Consensus 181 ~~~~~~VvIIGaG~aGL~aA~~L~~-----~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L 255 (881)
T PLN03000 181 QSSKSSVVIVGAGLSGLAAARQLMR-----FGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGII 255 (881)
T ss_pred cCCCCCEEEECccHHHHHHHHHHHH-----CCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHH
Confidence 3456899999999999999999999 999999999999999999999865 4679999999998754 45577
Q ss_pred HHHcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhh
Q 043512 93 TKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYY 172 (487)
Q Consensus 93 ~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (487)
++++|+......... .+...+|+...- .+...... .+..+++. ..++....
T Consensus 256 ~~qlgl~l~~~~~~~---~ly~~~Gk~v~~---------~~~~~ve~----------------~fn~lLd~-~~~lr~l~ 306 (881)
T PLN03000 256 ARQLGSSLYKVRDKC---PLYRVDGKPVDP---------DVDLKVEV----------------AFNQLLDK-ASKLRQLM 306 (881)
T ss_pred HHHcCCceeecCCCC---eEEEeCCcCCch---------hhhhhHHH----------------HHHHHHHH-HHHHHHHh
Confidence 899998755432221 133344543211 00000000 01111111 11111111
Q ss_pred hhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHH-HhhcCCCCCcchHHHHHhhh----cCCC
Q 043512 173 ESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIIT-RINYGQSLSISGLAGAVSLA----GSGG 247 (487)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~----~~~~ 247 (487)
.. ...-.++.+.+. .+.+++. ..+..... .++...+ ...+.....++.+....+.. +...
T Consensus 307 ~~---~~~D~SLg~aLe----------~~~~~~g-~~~t~e~~-~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G 371 (881)
T PLN03000 307 GD---VSMDVSLGAALE----------TFRQVSG-NDVATEEM-GLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGG 371 (881)
T ss_pred cc---cCcCCcHHHHHH----------HHHHHHc-ccCCHHHH-HHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCC
Confidence 10 000112222110 1112221 11111111 1111111 11122111222222222211 1122
Q ss_pred CceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC---CeeecCCCCCCCc
Q 043512 248 GLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL---NLHFSPPISIPER 324 (487)
Q Consensus 248 g~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~---~~~l~p~~~~~~~ 324 (487)
..+.++||+++|+++|++.+ .|+++++|++|..+++++.|++.+ +++.||+||+|+|+..+ .+.|.|++|..+.
T Consensus 372 ~~~~v~GG~~~LieaLa~~L--~I~Ln~~Vt~I~~~~dgV~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~ 448 (881)
T PLN03000 372 DHCFLPGGNGRLVQALAENV--PILYEKTVQTIRYGSNGVKVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKL 448 (881)
T ss_pred ceEEeCCCHHHHHHHHHhhC--CcccCCcEEEEEECCCeEEEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHH
Confidence 36678999999999999987 499999999999999999888754 48999999999999975 4789999875432
Q ss_pred CeEEEEEEEeeCCcCcccccCCCCCCCCce-----eEeccCCCCCeeEeeeccccCCCCcEEE------------eccCC
Q 043512 325 KLQHTHATFVRGALNPAYFGLDGVSKIPEL-----VATIEDPDLPFTCISVLKQHDENDFTYK------------IFSRK 387 (487)
Q Consensus 325 ~~~~~~~~~~~~~l~~~y~g~~~~~~~~~~-----i~~~~~~~~~~~~i~~~~~~~~~~~~~~------------~~s~~ 387 (487)
..- ..+-.|.+++.++.++... |+.. ....+........+++......+..+.- ..+++
T Consensus 449 ~AI---~rL~~G~l~KViL~Fd~~F-W~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~G~pVLvafv~Gd~A~~le~lSde 524 (881)
T PLN03000 449 DCI---KRLGFGLLNKVAMLFPYVF-WSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGPLLIALVAGEAAHKFETMPPT 524 (881)
T ss_pred HHH---HcCCCcceEEEEEEeCCcc-ccCCCCceeEEecCCCCCceeEEEeCCCCCCCCcEEEEEecCchhHHhhcCCHH
Confidence 210 1111222333444443331 2110 0100000000001111100000111111 11222
Q ss_pred CC---CHHHHhhhcccC-------CceEEEecc-------CCCCCCCCCC-------CC-CceeeCCceeeecchh--hh
Q 043512 388 PM---TDTLLDDIFSVR-------KETIRINWG-------AYPHYKAPEV-------FA-PFILDGRHLYYVNAFE--NA 440 (487)
Q Consensus 388 ~l---~~~~l~~~f~~~-------~~~~~~~w~-------~yp~~~~~~~-------~~-p~~l~g~~~~~~~~~~--~~ 440 (487)
++ ..++|+++|+.. .....++|. +|.. ..|+. ++ |+ ....+||+.... .+
T Consensus 525 E~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~-~~pG~~~~~~d~LaePv--~~GRIfFAGEaTs~~~ 601 (881)
T PLN03000 525 DAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSN-VAVGASGDDYDILAESV--GDGRLFFAGEATTRRY 601 (881)
T ss_pred HHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccC-CCCCCchHHHHHHhCcC--CCCcEEEeehHHhCCC
Confidence 22 257788889621 145568886 4442 22331 22 42 112577773111 23
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhcCCCC
Q 043512 441 ASTMETSAVAAENVARLILSRFFSKPSV 468 (487)
Q Consensus 441 ~s~~~~~~~~g~~~a~~i~~~l~~~~~~ 468 (487)
.++|+||..||.++|+.|++.++.....
T Consensus 602 ~GTVhGAieSGlRAA~eIl~~l~~~~~~ 629 (881)
T PLN03000 602 PATMHGAFVTGLREAANMAQSAKARGIR 629 (881)
T ss_pred CeeHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 4699999999999999999988776554
No 14
>PLN02676 polyamine oxidase
Probab=99.94 E-value=3.3e-25 Score=227.00 Aligned_cols=252 Identities=19% Similarity=0.272 Sum_probs=150.2
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCCCccceeEEEeeCCeEecccceeEec----CChhHHHH
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNGVVGGRMATVTISGQTFEAGASILHP----KNYHTVNF 92 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~----~~~~~~~~ 92 (487)
.+..+||+|||||++||+||+.|++ .|. +|+|+|+++++|||+.+....|+.+|.|++|++. ....+.++
T Consensus 23 ~~~~~~v~IIGaG~sGL~aa~~L~~-----~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l 97 (487)
T PLN02676 23 AKPSPSVIIVGAGMSGISAAKTLSE-----AGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWEL 97 (487)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHH-----cCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHH
Confidence 4457899999999999999999999 998 6999999999999999999999999999999974 34456788
Q ss_pred HHHcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhh
Q 043512 93 TKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYY 172 (487)
Q Consensus 93 ~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (487)
.+++|+.............+...+|+... ......+..... .+.++. ..+....
T Consensus 98 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~~------------~~~~~~~~~~~~----------~~~~~~----~~~~~~~ 151 (487)
T PLN02676 98 ANKLKLRTFYSDFDNLSSNIYKQDGGLYP------------KKVVQKSMKVAD----------ASDEFG----ENLSISL 151 (487)
T ss_pred HHhcCCceeecCccccceeEECCCCCCCC------------HHHHHHHHHHHH----------HHHHHH----HHHHHhh
Confidence 89998875432211100001111222210 000000010000 000000 0111000
Q ss_pred hhccCCCCCCCHHHHHHHcCChhhhcccH--HHHHHHcC-CCHHHHHHHHHHHH-HhhcCCCCC-cchHHHHHh---hhc
Q 043512 173 ESFETRPVFESVDEMLKWAGLFNLTARSL--EEELIDAR-LSPLLMQELVTIIT-RINYGQSLS-ISGLAGAVS---LAG 244 (487)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~-~~~~~~~~~~~~~~-~~~~g~~~~-~~~~~~~~~---~~~ 244 (487)
. . ... .+.++ .+++.+.. ....- .....+. ...++.+.+ ++... +.. +..
T Consensus 152 ~---~-~~~---------------~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~S~~~-~~~~~~~~~ 209 (487)
T PLN02676 152 S---A-KKA---------------VDISILTAQRLFGQVPKTPLE--MVIDYYNYDYEFAEPPRVTSLKN-TEPNPTFVD 209 (487)
T ss_pred c---c-cCC---------------CCccHHHHHHHHhhCCCCHHH--HHHHHHhccceeccCccccchhh-cCccccccc
Confidence 0 0 000 01111 11121111 01110 0111111 112444443 33322 111 111
Q ss_pred CCCCceEe--ecchHHHHHHHHHhc---------CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC-
Q 043512 245 SGGGLWAV--EGGNWQMAAGLINRS---------DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN- 312 (487)
Q Consensus 245 ~~~g~~~~--~gG~~~l~~~l~~~~---------G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~- 312 (487)
.....+.+ ++|+++|++.|++.+ +.+|++|++|++|..++++|.|++.+|+++.||+||+|+|+..+.
T Consensus 210 ~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~ 289 (487)
T PLN02676 210 FGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQS 289 (487)
T ss_pred CCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhcc
Confidence 12235555 689999999999865 267999999999999989999999999899999999999999764
Q ss_pred --eeecCCCCCC
Q 043512 313 --LHFSPPISIP 322 (487)
Q Consensus 313 --~~l~p~~~~~ 322 (487)
+.|.|++|..
T Consensus 290 ~~I~F~P~LP~~ 301 (487)
T PLN02676 290 DLIKFKPPLPDW 301 (487)
T ss_pred CceEEeCCCCHH
Confidence 7899988754
No 15
>PLN02568 polyamine oxidase
Probab=99.94 E-value=3.6e-25 Score=228.17 Aligned_cols=271 Identities=20% Similarity=0.228 Sum_probs=151.5
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCC-----CeEEEEecCCCccceeEEEeeCCeEecccceeEecC-ChhHHHHHH
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH-----PRILMFERNGVVGGRMATVTISGQTFEAGASILHPK-NYHTVNFTK 94 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-----~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~-~~~~~~~~~ 94 (487)
.+||+|||||++||+||+.|++ .| ++|+|||+++++|||+++....|+.+|.|++|+++. +.++.++++
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~-----~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~~~~~~l~~ 79 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYT-----SSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQ 79 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHh-----cccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCCCHHHHHHH
Confidence 4789999999999999999998 66 999999999999999999999999999999999964 456779999
Q ss_pred HcCCCCCCCCC-CCCCceEEEEcCCeeEEEeccCCCCcc--hhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHh
Q 043512 95 LLNLKPKDPPS-SEDSTAFGIWDGSKFVFKTISVSSTVP--FVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKY 171 (487)
Q Consensus 95 ~lgl~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (487)
++|+....... .... + .+....+.. .+.... ....+..... .+++....+...
T Consensus 80 ~~g~~~~~~~~~~~~~----~-~~~~~~~~~--~g~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~- 135 (539)
T PLN02568 80 EAGSLESDEPWECMDG----F-PDRPKTVAE--GGFEVDPSIVESISTLFR----------------GLMDDAQGKLIE- 135 (539)
T ss_pred HhCCccccCcceeccc----c-cccceEEcc--CCcCCCHHHHHHHHHHHH----------------HHHHHhhccccc-
Confidence 99985433211 0000 0 001111111 111110 1111111111 111110000000
Q ss_pred hhhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcC------C------------C-HHHHHHHHHHHHHh--hcCCC
Q 043512 172 YESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDAR------L------------S-PLLMQELVTIITRI--NYGQS 230 (487)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~------------~-~~~~~~~~~~~~~~--~~g~~ 230 (487)
-..+ ....+..+.+.... ........++.+++++.. + . +.....++..+... .++..
T Consensus 136 ~~~~-~~~d~~~~~~~~~~-~~~~~~~~Sl~~fl~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 213 (539)
T PLN02568 136 PSEV-DEVDFVKLAAKAAR-VCESGGGGSVGSFLRRGLDAYWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSA 213 (539)
T ss_pred cccc-ccccccccchhccc-hhccCCCCcHHHHHHHHHHHHHhhcccchhhccccchhHHHHHHHHHHHHHHhhcccccc
Confidence 0000 00000000000000 000000123444433210 0 0 01111222222221 12221
Q ss_pred CCcchHHHHH--hhhcCCCCceEeecchHHHHHHHHHhc-CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccC
Q 043512 231 LSISGLAGAV--SLAGSGGGLWAVEGGNWQMAAGLINRS-DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATP 307 (487)
Q Consensus 231 ~~~~~~~~~~--~~~~~~~g~~~~~gG~~~l~~~l~~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~ 307 (487)
..++.+.... .+.+..+..+.+.||++.|+++|++.+ +.+|++|++|++|..+++++.|++.+|+++.||+||+|+|
T Consensus 214 ~~ls~ls~~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvP 293 (539)
T PLN02568 214 DDLSTLDLAAESEYRMFPGEEITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVS 293 (539)
T ss_pred ccHhhccccccCcceecCCCeEEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCC
Confidence 1222211100 011112346789999999999999987 4679999999999999999999999998999999999999
Q ss_pred CCCCC-------eeecCCCCCC
Q 043512 308 LDELN-------LHFSPPISIP 322 (487)
Q Consensus 308 ~~~~~-------~~l~p~~~~~ 322 (487)
+.... +.|.|++|..
T Consensus 294 l~vL~~~~~~~~i~F~P~LP~~ 315 (539)
T PLN02568 294 LGVLKAGIGEDSGLFSPPLPDF 315 (539)
T ss_pred HHHHhhccccccceecCCCCHH
Confidence 99754 4798988654
No 16
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.93 E-value=5.2e-24 Score=224.54 Aligned_cols=247 Identities=19% Similarity=0.236 Sum_probs=147.1
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCe----EecccceeEecCCh-hHHHHH
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQ----TFEAGASILHPKNY-HTVNFT 93 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~----~~d~G~~~~~~~~~-~~~~~~ 93 (487)
...++|+|||||++||+||+.|++ .|++|+|+|+++++|||+.+....|. .+|+|++|+++... ++..++
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~-----~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~ 310 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLS-----MGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLA 310 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHH-----CCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHH
Confidence 346899999999999999999999 99999999999999999999987653 68999999998653 466899
Q ss_pred HHcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhh
Q 043512 94 KLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYE 173 (487)
Q Consensus 94 ~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (487)
+++|+....... .+.+.+.+|..+... +.+..... +..+++.. .++.....
T Consensus 311 ~~lgl~~~~~~~---~~~~~~~dG~~~~~~---------~~~~v~~~----------------f~~lL~~~-~klr~~~~ 361 (808)
T PLN02328 311 RQLGLPLHKVRD---ICPLYLPDGKAVDAE---------IDSKIEAS----------------FNKLLDRV-CKLRQAMI 361 (808)
T ss_pred HHcCCceEecCC---CceEEeCCCcCcchh---------hhhhHHHH----------------HHHHHHHH-HHHHHhhh
Confidence 999986543321 122434445433211 11111000 01111100 00000000
Q ss_pred hccCCCCCCCHHHHHHHcCChhhhcccHHHHHHH------cCCCHHHHHHHHHHHHH-hhcCCCCCcchHHHHHhhh---
Q 043512 174 SFETRPVFESVDEMLKWAGLFNLTARSLEEELID------ARLSPLLMQELVTIITR-INYGQSLSISGLAGAVSLA--- 243 (487)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~--- 243 (487)
... . ..+.++.+++.. ....+... .+....+. ..+.....+..+....+..
T Consensus 362 ~~~-~-----------------~~D~SLg~~le~~~~~~~~~~~~~e~-~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~~ 422 (808)
T PLN02328 362 EEV-K-----------------SVDVNLGTALEAFRHVYKVAEDPQER-MLLNWHLANLEYANASLMSNLSMAYWDQDDP 422 (808)
T ss_pred hcc-c-----------------ccCcCHHHHHHHHhhhhccCCCHHHH-HHHHHHHHHHhccchhhHHHHHhhhhhcccc
Confidence 000 0 011223333321 11111111 11111111 1111111111111111111
Q ss_pred -cCCCCceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC---eeecCCC
Q 043512 244 -GSGGGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN---LHFSPPI 319 (487)
Q Consensus 244 -~~~~g~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~---~~l~p~~ 319 (487)
+.....+.+.||++.|+++|++.++ |++|++|++|...+++|.| +.+|+++.||+||+|+|+..+. +.|.|++
T Consensus 423 ~e~~G~~~~v~GG~~~Li~aLa~~L~--I~ln~~V~~I~~~~dgV~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~L 499 (808)
T PLN02328 423 YEMGGDHCFIPGGNDTFVRELAKDLP--IFYERTVESIRYGVDGVIV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPEL 499 (808)
T ss_pred ccCCCeEEEECCcHHHHHHHHHhhCC--cccCCeeEEEEEcCCeEEE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCC
Confidence 1112366889999999999999884 8999999999999888877 4567789999999999999754 6788887
Q ss_pred CC
Q 043512 320 SI 321 (487)
Q Consensus 320 ~~ 321 (487)
|.
T Consensus 500 P~ 501 (808)
T PLN02328 500 PQ 501 (808)
T ss_pred CH
Confidence 64
No 17
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.93 E-value=4.6e-24 Score=210.95 Aligned_cols=248 Identities=21% Similarity=0.232 Sum_probs=173.9
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCC--CeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWH--PRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLK 99 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G--~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~ 99 (487)
++|+|||||++||+|||+|+| ++ .+|+|||+.+++||.++|+..+|+.||.|++.+......+.++++++|++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k-----~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGle 75 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQK-----AGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLE 75 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHH-----hCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcH
Confidence 469999999999999999999 88 99999999999999999999999999999987776667778999999998
Q ss_pred CCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCC
Q 043512 100 PKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRP 179 (487)
Q Consensus 100 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (487)
....+.... ..+.+.+|+...+.. .....++..... +.....+.+.
T Consensus 76 d~l~~~~~~-~~~i~~~gkl~p~P~---~~i~~ip~~~~~-------------~~~~~~~~~~----------------- 121 (444)
T COG1232 76 DKLLWNSTA-RKYIYYDGKLHPIPT---PTILGIPLLLLS-------------SEAGLARALQ----------------- 121 (444)
T ss_pred HhhccCCcc-cceEeeCCcEEECCc---cceeecCCcccc-------------chhHHHHHHH-----------------
Confidence 877644322 124556666555532 111112211110 0000000100
Q ss_pred CCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCC-cchHHHHHhhh------cC-------
Q 043512 180 VFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLS-ISGLAGAVSLA------GS------- 245 (487)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~------~~------- 245 (487)
++..........+.++++|++++- +..+.+.++.++++..|+.+.+ +|+-...-... +.
T Consensus 122 ------~~~~~~~~~~~~d~sv~~f~r~~f-G~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~ 194 (444)
T COG1232 122 ------EFIRPKSWEPKQDISVGEFIRRRF-GEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKK 194 (444)
T ss_pred ------hhhcccCCCCCCCcCHHHHHHHHH-hHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhh
Confidence 000001112234577888887653 3666777889999999988764 66541111110 00
Q ss_pred ----C----CC-ceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCCeee
Q 043512 246 ----G----GG-LWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELNLHF 315 (487)
Q Consensus 246 ----~----~g-~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~~~l 315 (487)
. .+ ..+++||++.++++|.+.+..+|+++++|++|.++..++++.+.+|+.+.||.||+|+|++.....+
T Consensus 195 ~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll 273 (444)
T COG1232 195 EGLPKQSLKKEKFGYLRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLL 273 (444)
T ss_pred ccCcccccccccccccCccHHHHHHHHHHHhhhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHc
Confidence 0 12 4478999999999999999888999999999999977777888899899999999999998754333
No 18
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.93 E-value=2.9e-24 Score=206.72 Aligned_cols=286 Identities=19% Similarity=0.280 Sum_probs=164.1
Q ss_pred CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEec-CChhHHHHHHH
Q 043512 17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHP-KNYHTVNFTKL 95 (487)
Q Consensus 17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~-~~~~~~~~~~~ 95 (487)
.....++|+|||||+|||+||.+|.+. .+.+|+|||+.+|+|||++|+...+..+|+|++|+|+ .+.++.++.++
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle~----gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~~ 92 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLEN----GFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAKE 92 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHHh----CCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCCChHHHHHHH
Confidence 344567899999999999999999961 4579999999999999999999998899999999999 56678899998
Q ss_pred cC-CCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcc--hhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhh
Q 043512 96 LN-LKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVP--FVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYY 172 (487)
Q Consensus 96 lg-l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (487)
.| +..... ..+. ..+...... .+.... +...+..+... +....
T Consensus 93 ~g~~~~~~~-tg~~-----~~~~~~~~~----~g~~V~~~~~~~~~~~~~~------------------------~~~~~ 138 (498)
T KOG0685|consen 93 YGDLKLLEV-TGPA-----YVDNFHTRS----NGEVVPEELLDELNEITVT------------------------LSDKL 138 (498)
T ss_pred hCccceecc-CCcc-----ccceeEEEe----cCccCcHHHHHHHHHHHHh------------------------hhhhc
Confidence 88 221111 1100 001111111 011110 11111111110 00000
Q ss_pred hhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcC---CCHHHHHHHHHHHHHhh----cCCCCCcchHHHHHhhhcC
Q 043512 173 ESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDAR---LSPLLMQELVTIITRIN----YGQSLSISGLAGAVSLAGS 245 (487)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~ 245 (487)
+.......-.+..+.++ ..+.+.+.... ....+..+++..+.... ...+++.-++..+..+.+.
T Consensus 139 r~~~~~~~~~SvG~~ln---------~~~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey~~~ 209 (498)
T KOG0685|consen 139 REAEIAHDEGSVGEYLN---------SEFWDELRGPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRALLEYTEC 209 (498)
T ss_pred ccccccCccccHHHHHH---------HHHHHHhccccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhccceeec
Confidence 00000011122222221 11222221100 01222233333333321 1112222222333333333
Q ss_pred CC--CceEeecchHHHHHHHHHhc-------C--CeEEeCCceEEEEEeC-CEEEEEEccCceEecCEEEEccCCCCCCe
Q 043512 246 GG--GLWAVEGGNWQMAAGLINRS-------D--VALHLHEEIESISYLR-EYYELNSTKGNSYTCQITVVATPLDELNL 313 (487)
Q Consensus 246 ~~--g~~~~~gG~~~l~~~l~~~~-------G--~~i~~~~~V~~I~~~~-~~v~V~~~~G~~~~ad~VV~a~~~~~~~~ 313 (487)
.+ .....+-|+..+.+-|++.. | .+++++++|.+|..++ +.+.|++.||+.+.||+|||++++..++.
T Consensus 210 ~ge~~~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~ 289 (498)
T KOG0685|consen 210 PGEELLIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKE 289 (498)
T ss_pred CchhhheechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhh
Confidence 33 33345667899998887732 2 4566679999999875 56899999999999999999999998754
Q ss_pred ----eecCCCCCCCcCeEEEEEEEeeCCcCcccccCCCCCCCCc
Q 043512 314 ----HFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPE 353 (487)
Q Consensus 314 ----~l~p~~~~~~~~~~~~~~~~~~~~l~~~y~g~~~~~~~~~ 353 (487)
.|.|++|..+... +-.+..|..+++|+-++.+. +|.
T Consensus 290 ~h~~lF~P~LP~~K~~A---Ie~lgfGtv~KiFLE~E~pf-wp~ 329 (498)
T KOG0685|consen 290 QHHKLFVPPLPAEKQRA---IERLGFGTVNKIFLEFEEPF-WPS 329 (498)
T ss_pred hhhhhcCCCCCHHHHHH---HHhccCCccceEEEEccCCC-CCC
Confidence 5889987654333 22344577778888887763 444
No 19
>PLN02612 phytoene desaturase
Probab=99.92 E-value=2.1e-22 Score=210.14 Aligned_cols=263 Identities=16% Similarity=0.167 Sum_probs=162.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEee-CCeEecccceeEecCChhHHHHHHHcCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTI-SGQTFEAGASILHPKNYHTVNFTKLLNL 98 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~-~g~~~d~G~~~~~~~~~~~~~~~~~lgl 98 (487)
...+|+|||||++||+||++|++ +|++|+|+|+++++||++.++.. +|+.+|.|++++.+.++++.++++++|+
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~-----~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~ 166 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLAD-----AGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGI 166 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHh-----cCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCC
Confidence 45789999999999999999999 99999999999999999999874 7899999999999888888899999998
Q ss_pred CCCCCCCCCCCceEEEEcC-CeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccC
Q 043512 99 KPKDPPSSEDSTAFGIWDG-SKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFET 177 (487)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (487)
.....+.... ..+.+.+. ..+.....+.. ++..+..+...+ ..... . .+.+ +........
T Consensus 167 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~----~P~~l~~~~~~l---~~~~~--l---s~~~----kl~~~~~~~-- 227 (567)
T PLN02612 167 NDRLQWKEHS-MIFAMPNKPGEFSRFDFPEV----LPAPLNGIWAIL---RNNEM--L---TWPE----KIKFAIGLL-- 227 (567)
T ss_pred cccceecccc-eEEEecCCCCceeeCcCchh----cCChhhhhHHHH---hcCcc--C---CHHH----HHHHHHhhh--
Confidence 6543322111 01111111 11111000000 111111111110 00000 0 0000 000000000
Q ss_pred CCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHHH---hhhcCCC--CceE
Q 043512 178 RPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGAV---SLAGSGG--GLWA 251 (487)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~---~~~~~~~--g~~~ 251 (487)
+ ............++.++.+|+++.+.++.+.++++..+....++.+. ++++.+.+. .+..... ...+
T Consensus 228 -~-----~~~~~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~ 301 (567)
T PLN02612 228 -P-----AIVGGQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAF 301 (567)
T ss_pred -H-----HhcccchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEee
Confidence 0 00000001123457899999999999888888888777766555443 455533322 1212122 2445
Q ss_pred eecch-HHHHHHHHH---hcCCeEEeCCceEEEEEeCCE--EEEEEccCceEecCEEEEccCCCCCC
Q 043512 252 VEGGN-WQMAAGLIN---RSDVALHLHEEIESISYLREY--YELNSTKGNSYTCQITVVATPLDELN 312 (487)
Q Consensus 252 ~~gG~-~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VV~a~~~~~~~ 312 (487)
+.|+. ..+++.|++ +.|++|++|++|++|..++++ ++|++.+|+.+.||+||+|+|+....
T Consensus 302 ~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~ 368 (567)
T PLN02612 302 LDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILK 368 (567)
T ss_pred ecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHH
Confidence 56664 567777766 469999999999999986544 36788889899999999999986543
No 20
>PLN02976 amine oxidase
Probab=99.92 E-value=1e-22 Score=219.60 Aligned_cols=413 Identities=19% Similarity=0.236 Sum_probs=203.1
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEee-CCeEecccceeEecCC---------hhHH
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTI-SGQTFEAGASILHPKN---------YHTV 90 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~-~g~~~d~G~~~~~~~~---------~~~~ 90 (487)
.+||+|||||++|+++|+.|++ .|++|+|||+++++||++.+... .|+.+|+|++|+++.. .+..
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~-----~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~ 767 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQR-----QGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSS 767 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHH-----CCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHH
Confidence 4789999999999999999999 99999999999999999999875 5889999999998642 1233
Q ss_pred HHHHHcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHH----HHH-HHHhcCC--hHHHhHHHHH
Q 043512 91 NFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANS----VLM-VLRYGLS--LLRMESFTES 163 (487)
Q Consensus 91 ~~~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~--~~~~~~~~~~ 163 (487)
.+++++|+.......... .+...+|..+.- .....+....+. ... +.+.+.. ..-+..++..
T Consensus 768 ~la~qlGl~l~~~~~~~~--~yd~~~G~~V~~---------e~~~~v~~~fn~lld~~~~~~~~~g~~a~d~SLgd~Le~ 836 (1713)
T PLN02976 768 LICAQLGLELTVLNSDCP--LYDVVTGEKVPA---------DLDEALEAEYNSLLDDMVLLVAQKGEHAMKMSLEDGLEY 836 (1713)
T ss_pred HHHHhcCCccccccCCCc--eeEccCCcCCCH---------HHHHHHHHHHHHHHHHHHHHHhhcccCccCCCHHHHHHH
Confidence 478888987654332211 011122222211 011111111111 000 0000000 0001111111
Q ss_pred HHHHHHHhh-hhccCC---CCCCC-HHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHh-hc--CCCC-Ccc
Q 043512 164 AVDKFLKYY-ESFETR---PVFES-VDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRI-NY--GQSL-SIS 234 (487)
Q Consensus 164 ~~~~~~~~~-~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~--g~~~-~~~ 234 (487)
. +.... ...... ..... ..+++..... ........+......+.+. .+.++...+.. .+ +.++ +++
T Consensus 837 ~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~v~G~~~er~s~~~~Ls~~-er~lL~w~~~~lE~~~aa~L~eVS 911 (1713)
T PLN02976 837 A---LKRRRMPRPGVDIDETELGNAADDLYDSAST-GVDGGHCEKESKEDVLSPL-ERRVMNWHFAHLEYGCAALLKEVS 911 (1713)
T ss_pred H---Hhhhhccccccccchhhcccchhhhhhhhhh-cccccchhhhhHHHhhCHH-HHHHHHHHHHhhcccccCCHHHhh
Confidence 0 00000 000000 00000 0000000000 0000000000000011111 11122222221 12 3333 244
Q ss_pred hHHHHH--hhhcCCCCceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEe----------CCEEEEEEccCceEecCEE
Q 043512 235 GLAGAV--SLAGSGGGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYL----------REYYELNSTKGNSYTCQIT 302 (487)
Q Consensus 235 ~~~~~~--~~~~~~~g~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~----------~~~v~V~~~~G~~~~ad~V 302 (487)
..+... .+....+..+.+.||+++|+++|++.+ .|++|++|++|.+. +++|.|.|.+|+++.||+|
T Consensus 912 l~~~~qd~~y~~fgG~~~rIkGGYqqLIeALAe~L--~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaV 989 (1713)
T PLN02976 912 LPYWNQDDVYGGFGGAHCMIKGGYSNVVESLAEGL--DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAV 989 (1713)
T ss_pred hhhhhcccccccCCCceEEeCCCHHHHHHHHHhhC--CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceE
Confidence 332110 011122346789999999999999977 59999999999984 3568899999989999999
Q ss_pred EEccCCCCCC---eeecCCCCCCCcCeEEEEEEEeeCCcCcccccCCCCCCCCce--eE--eccC-CCCCeeEeeec-cc
Q 043512 303 VVATPLDELN---LHFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPEL--VA--TIED-PDLPFTCISVL-KQ 373 (487)
Q Consensus 303 V~a~~~~~~~---~~l~p~~~~~~~~~~~~~~~~~~~~l~~~y~g~~~~~~~~~~--i~--~~~~-~~~~~~~i~~~-~~ 373 (487)
|+|+|+..+. +.|.|++|..+... +..+..|.++++++-++.+. |+.. .. .... +..+.....+. ..
T Consensus 990 IVTVPLGVLKag~I~FsPPLPe~KqaA---IqrLgfG~lnKV~LeFdrpF-W~~d~d~FG~s~edtdlrG~~~~~wnlr~ 1065 (1713)
T PLN02976 990 LITVPLGCLKAETIKFSPPLPDWKYSS---IQRLGFGVLNKVVLEFPEVF-WDDSVDYFGATAEETDLRGQCFMFWNVKK 1065 (1713)
T ss_pred EEeCCHHHhhhcccccCCcccHHHHHH---HHhhccccceEEEEEeCCcc-ccCCCCccccccccCCCCceEEEeccCCC
Confidence 9999999753 78999887543221 01111233333333333321 2110 00 0000 00000001110 00
Q ss_pred cCCCCcEEEe-----------ccCCCC---CHHHHhhhcccC-----CceEEEecc-------CCCCCCCCCC-------
Q 043512 374 HDENDFTYKI-----------FSRKPM---TDTLLDDIFSVR-----KETIRINWG-------AYPHYKAPEV------- 420 (487)
Q Consensus 374 ~~~~~~~~~~-----------~s~~~l---~~~~l~~~f~~~-----~~~~~~~w~-------~yp~~~~~~~------- 420 (487)
..+..-+... .+++++ ..+.|+++|+.. .....++|. +|. +.+|+.
T Consensus 1066 psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYS-y~~PGs~~~d~d~ 1144 (1713)
T PLN02976 1066 TVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYS-YVAIGASGEDYDI 1144 (1713)
T ss_pred CCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCcccc-CCCCCCCchHHHH
Confidence 0000111111 111111 246788899843 135568885 443 233441
Q ss_pred C-CCceeeCCceeeecc--hhhhHHHHhHHHHHHHHHHHHHHhhhhc
Q 043512 421 F-APFILDGRHLYYVNA--FENAASTMETSAVAAENVARLILSRFFS 464 (487)
Q Consensus 421 ~-~p~~l~g~~~~~~~~--~~~~~s~~~~~~~~g~~~a~~i~~~l~~ 464 (487)
+ .| .+..+||+.- ...+.++|+||..+|+++|+.|++.+..
T Consensus 1145 LAeP---VggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~ 1188 (1713)
T PLN02976 1145 LGRP---VENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNT 1188 (1713)
T ss_pred HhCC---CCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHc
Confidence 2 25 3434888731 1133569999999999999999998864
No 21
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.91 E-value=7.7e-24 Score=204.18 Aligned_cols=394 Identities=17% Similarity=0.155 Sum_probs=210.0
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCC
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNL 98 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl 98 (487)
+...||||||||++||+||+.|.+ .|++|+|+|+++++|||+.+.+..|...|.|++++.+.......+++++|+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~k-----aG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p~~~~~l~~~k~~gv 79 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKK-----AGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINPTHDALLAYAKEFGV 79 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhh-----cCcEEEEEeccCCcCceeEEEeccceeeccCCcccCccchhhhhhHHhcCC
Confidence 567899999999999999999999 999999999999999999999998889999999988866666689999999
Q ss_pred CCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCC
Q 043512 99 KPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETR 178 (487)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (487)
.......... + +..+.+....+ ...... ...+.- .....+..........
T Consensus 80 ~~~~fi~~g~-~-~~~~~~~~~~~--------p~~~~~--~~~d~~------------------~~~~~~~~~a~~~~~~ 129 (450)
T COG1231 80 PLEPFIRDGD-N-VIGYVGSSKST--------PKRSLT--AAADVR------------------GLVAELEAKARSAGEL 129 (450)
T ss_pred CCCceeccCc-c-ccccccccccc--------chhccc--hhhhhc------------------chhhhhhhhhhccccc
Confidence 8876653221 0 11111111000 000000 000000 0000000000000000
Q ss_pred CCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC--CcchH---HHHHhhh------cCC-
Q 043512 179 PVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL--SISGL---AGAVSLA------GSG- 246 (487)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~---~~~~~~~------~~~- 246 (487)
.+..+ ......+..++.+| +.... ..+. ...-.+..+++.. +...+ ....... ...
T Consensus 130 ~~~~t-------~~~~e~~~~~~~~W-~~~~~-~~~~---~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~ 197 (450)
T COG1231 130 DPGLT-------PEDRELDLESLAAW-KTSSL-RGLS---RDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEI 197 (450)
T ss_pred CcccC-------cchhhhhhHHHHhh-hhccc-cccc---cCccceeccCCCCcccccchhhhhhhhhhhhccccccccc
Confidence 00001 01112233444455 11000 0000 0011111222111 11111 1111111 111
Q ss_pred -CCceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC-CeeecCCCCCCCc
Q 043512 247 -GGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL-NLHFSPPISIPER 324 (487)
Q Consensus 247 -~g~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~-~~~l~p~~~~~~~ 324 (487)
.-.+.+.|||+++++++++++|-.|+++++|++|..++++|+|++.+.+++.+|.||||.|+... .++|.|.++.+.+
T Consensus 198 ~~~~~~~~GGmd~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~~~~~ 277 (450)
T COG1231 198 RTQMLQRLGGMDQLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILGQIDFAPLLPAEYK 277 (450)
T ss_pred cchhhccCccHHHHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHhhcccCCCCCHHHH
Confidence 12445569999999999999999999999999999999999999988458999999999999974 6889886543211
Q ss_pred C----eEEEEEEEeeCCcCcccccCCCCCCCCceeEe-------ccCCCCCe---eEeeeccc-cCCCCcEEEeccCCCC
Q 043512 325 K----LQHTHATFVRGALNPAYFGLDGVSKIPELVAT-------IEDPDLPF---TCISVLKQ-HDENDFTYKIFSRKPM 389 (487)
Q Consensus 325 ~----~~~~~~~~~~~~l~~~y~g~~~~~~~~~~i~~-------~~~~~~~~---~~i~~~~~-~~~~~~~~~~~s~~~l 389 (487)
. ..+...+......+. =|+-+.. .....+++ +.++. .+ +.+.++.- ......+|..+++++.
T Consensus 278 ~a~~~~~y~~~~K~~v~f~r-pFWee~~-~l~G~~~tD~~~~~i~~~s~-~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r 354 (450)
T COG1231 278 QAAKGVPYGSATKIGVAFSR-PFWEEAG-ILGGESLTDLGLGFISYPSA-PFADGPGVLLGSYAFGDDALVIDALPEAER 354 (450)
T ss_pred HHhcCcCcchheeeeeecCc-hhhhhcc-cCCceEeecCCcceEecCcc-ccCCCceEEEeeeeccccceeEecCCHHHH
Confidence 1 111111111000000 1221111 01111111 11111 11 12222111 1223455555554433
Q ss_pred ---CHHHHhhhcccCC-----ceEEEeccCCCCCCC------CC---CCCCceeeCC-ceeeecchhh---hHHHHhHHH
Q 043512 390 ---TDTLLDDIFSVRK-----ETIRINWGAYPHYKA------PE---VFAPFILDGR-HLYYVNAFEN---AASTMETSA 448 (487)
Q Consensus 390 ---~~~~l~~~f~~~~-----~~~~~~w~~yp~~~~------~~---~~~p~~l~g~-~~~~~~~~~~---~~s~~~~~~ 448 (487)
....+.++|++.. .....+|+.+|.... |+ .+-|...... .++++ +.|+ +...||||.
T Consensus 355 ~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~A-gtEhas~~~Gw~eGAi 433 (450)
T COG1231 355 RQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFA-GTEHASEFGGWLEGAI 433 (450)
T ss_pred HHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEe-eecccccccchhHHHH
Confidence 3577888887442 124577876662222 11 1111111222 35555 4443 346899999
Q ss_pred HHHHHHHHHHHhhhh
Q 043512 449 VAAENVARLILSRFF 463 (487)
Q Consensus 449 ~~g~~~a~~i~~~l~ 463 (487)
.+|+++|..|...+.
T Consensus 434 ~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 434 RSGQRAAAEIHALLS 448 (450)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999988764
No 22
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.91 E-value=2.4e-22 Score=206.21 Aligned_cols=256 Identities=16% Similarity=0.177 Sum_probs=156.1
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEe-eCCeEecccceeEecCChhHHHHHHHcCCCCC
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVT-ISGQTFEAGASILHPKNYHTVNFTKLLNLKPK 101 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~~ 101 (487)
+|+|||||++||+||+.|++ +|++|+|+|+++++||++++.. .+|+.+|.|++++...++++.++++++|+...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~-----~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 75 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLAD-----AGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR 75 (453)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc
Confidence 59999999999999999999 9999999999999999999985 57899999999999888888899999998654
Q ss_pred CCCCCCCCceEEEE-c--CCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCC
Q 043512 102 DPPSSEDSTAFGIW-D--GSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETR 178 (487)
Q Consensus 102 ~~~~~~~~~~~~~~-~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (487)
....... ..+. . +........ +. .+..+..+.. +.+.. .. ..+.+.. .........
T Consensus 76 ~~~~~~~---~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~----~~~~~-~~---~~~~~~~-~~~~~~~~~---- 134 (453)
T TIGR02731 76 LQWKSHS---MIFNQPDKPGTFSRFDF-PD----IPAPFNGVAA----ILRNN-DM---LTWPEKI-KFAIGLLPA---- 134 (453)
T ss_pred eeecCCc---eEEecCCCCcceeeccC-CC----CCCCHHHHHH----HhcCc-CC---CCHHHHH-HHHHHhHHH----
Confidence 3221111 1111 1 111111000 00 0011000000 00000 00 0000000 000000000
Q ss_pred CCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHHH---hhhcCCCC--ceEe
Q 043512 179 PVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGAV---SLAGSGGG--LWAV 252 (487)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~---~~~~~~~g--~~~~ 252 (487)
............+.++.+|+++.+.++.+.++++.++....++.++ ++|+.+.+- .+.....| ..+.
T Consensus 135 -------~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~ 207 (453)
T TIGR02731 135 -------IVRGQKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFL 207 (453)
T ss_pred -------HhcCccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEee
Confidence 0000011123467899999999999999888888888887776665 456544321 11211122 2234
Q ss_pred ecc-hHHHHHHHHHh---cCCeEEeCCceEEEEEeCC-EE-EEEEccCc-----eEecCEEEEccCCCCC
Q 043512 253 EGG-NWQMAAGLINR---SDVALHLHEEIESISYLRE-YY-ELNSTKGN-----SYTCQITVVATPLDEL 311 (487)
Q Consensus 253 ~gG-~~~l~~~l~~~---~G~~i~~~~~V~~I~~~~~-~v-~V~~~~G~-----~~~ad~VV~a~~~~~~ 311 (487)
.|+ ++++++.|.+. .|++|++|++|++|..+++ ++ +|++.+|+ ++.||.||+|+|++..
T Consensus 208 ~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~ 277 (453)
T TIGR02731 208 DGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIF 277 (453)
T ss_pred cCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHH
Confidence 443 45666666553 4999999999999986543 34 67776665 7999999999999763
No 23
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.90 E-value=1.4e-21 Score=200.25 Aligned_cols=265 Identities=13% Similarity=0.091 Sum_probs=158.8
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEe-eCCeEecccceeEecCChhHHHHHHHcCCCCC
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVT-ISGQTFEAGASILHPKNYHTVNFTKLLNLKPK 101 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~~ 101 (487)
+|+|||||++||+||+.|++ .|++|+|+|+++++||+++++. .+|+.+|.|++++...+.++.++++++|+...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~-----~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~ 75 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVD-----AGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDN 75 (474)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCccc
Confidence 58999999999999999999 9999999999999999999974 67999999999999888888899999998755
Q ss_pred CCCCCCCCceEEEE-cCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcC-ChHHHhHHHHHHHHHHHHhhhhccCCC
Q 043512 102 DPPSSEDSTAFGIW-DGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGL-SLLRMESFTESAVDKFLKYYESFETRP 179 (487)
Q Consensus 102 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (487)
....... ..... ++....+.. +.. +..++ .....++++.. +...-.+...... .. .....
T Consensus 76 ~~~~~~~--~~~~~~~~~~~~~~~---~~~--~~~P~----~~~~~~l~~~~ls~~dklr~~~~~~-~~-~~~~~----- 137 (474)
T TIGR02732 76 LLLKEHT--HTFVNKGGDIGELDF---RFA--TGAPF----NGLKAFFTTSQLKWVDKLRNALALG-TS-PIVRG----- 137 (474)
T ss_pred cccccce--eEEEcCCCccccccc---CCC--CCCch----hhhHHHhcCCCCCHHHHHHHHHHhh-hh-HHHhh-----
Confidence 4322111 11111 122111110 000 00110 01111111110 1000000000000 00 00000
Q ss_pred CCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHH-----HHhhhcCCCCceEee
Q 043512 180 VFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAG-----AVSLAGSGGGLWAVE 253 (487)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~-----~~~~~~~~~g~~~~~ 253 (487)
+....... .......+.++.+|+++.+.++...+.++.+++...++.+. ++|+... .+..........+++
T Consensus 138 -~~~~~~~~--~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~ 214 (474)
T TIGR02732 138 -LVDYDGAM--KTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLK 214 (474)
T ss_pred -ccccchhh--hhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeec
Confidence 00000000 01113356899999999999888788899988888777665 4665322 111111122456788
Q ss_pred cchHH-HHHHHHH---hcCCeEEeCCceEEEEEeC--C---EE-EEEEccC---ceEecCEEEEccCCCCCCe
Q 043512 254 GGNWQ-MAAGLIN---RSDVALHLHEEIESISYLR--E---YY-ELNSTKG---NSYTCQITVVATPLDELNL 313 (487)
Q Consensus 254 gG~~~-l~~~l~~---~~G~~i~~~~~V~~I~~~~--~---~v-~V~~~~G---~~~~ad~VV~a~~~~~~~~ 313 (487)
||... +.+.|.+ +.|++|+++++|++|..++ + ++ +|++.+| +.+.||+||+|+|++....
T Consensus 215 g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~ 287 (474)
T TIGR02732 215 GSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKR 287 (474)
T ss_pred CCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHh
Confidence 87655 3333433 3699999999999999864 2 23 4555444 4689999999999986543
No 24
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=2.8e-22 Score=203.07 Aligned_cols=265 Identities=20% Similarity=0.205 Sum_probs=145.4
Q ss_pred CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeE-ecccceeEecCCh-hHHHHHH
Q 043512 17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQT-FEAGASILHPKNY-HTVNFTK 94 (487)
Q Consensus 17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~-~d~G~~~~~~~~~-~~~~~~~ 94 (487)
.....++|||||||++||+||..|.+ .|++|+|||+++|+|||++|++..+.. +|+|++|+++.+. ++..+.+
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~-----~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~ 85 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQD-----FGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSK 85 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHH-----cCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHH
Confidence 44456799999999999999999999 999999999999999999999987666 9999999998776 6778999
Q ss_pred HcCCCCCCCCCCCCCceEEEEcCCe-eEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhh
Q 043512 95 LLNLKPKDPPSSEDSTAFGIWDGSK-FVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYE 173 (487)
Q Consensus 95 ~lgl~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (487)
++|++......... +....+.. ..... .. .......+......++ .....
T Consensus 86 qlgl~~~~~~~~~~---l~~~~~~~~~~~~d----~~--~~~~~~~l~~~~~~~~--------------------~~~~~ 136 (501)
T KOG0029|consen 86 QLGLELYKVRDTCP---LFNENGGESDKVFD----DF--VEQEFNRLLDDASNLE--------------------QRLDN 136 (501)
T ss_pred HhCcccceeccccc---ccccCCcccccccc----cc--hhhhhHHHHHHHhhhh--------------------hhhhh
Confidence 99998765433221 11111211 11000 00 0011111111111111 10000
Q ss_pred hccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhhc----CCCCc
Q 043512 174 SFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAG----SGGGL 249 (487)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~g~ 249 (487)
. .......+..+.+........ ......++...+..... +..-+....+.............+... .....
T Consensus 137 ~-~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 211 (501)
T KOG0029|consen 137 E-IIGISDDSFGEALEAFLSASR-LMKTLLELLLEGEADKV---LQWHLVNLELTFIAHLENASARLWDQDELFGGGGIH 211 (501)
T ss_pred c-ccccccccHHHHHHhHHHHHH-HHHhhHHHhhhhhhhHH---HHHHHHHHHHHhhccHhHhhHHhhhhhhhcccccch
Confidence 0 000000111111100000000 00001111111110000 000000111111111111112222221 11123
Q ss_pred eEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCE-EEEEEccCceEecCEEEEccCCCCC---CeeecCCCCCC
Q 043512 250 WAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREY-YELNSTKGNSYTCQITVVATPLDEL---NLHFSPPISIP 322 (487)
Q Consensus 250 ~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~a~~~~~~---~~~l~p~~~~~ 322 (487)
....+|+..++.++++ |.+|+++..|.+|...+++ +.+++.++..+.+|+||+++|+..+ .+.|.|++|..
T Consensus 212 ~~~~~G~~~v~~~la~--~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~ 286 (501)
T KOG0029|consen 212 LLMKGGYEPVVNSLAE--GLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRW 286 (501)
T ss_pred hHhhCCccHHHhhcCC--CcceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHH
Confidence 4678999999999987 7799999999999987765 3455555556999999999999974 47899998764
No 25
>PLN02487 zeta-carotene desaturase
Probab=99.90 E-value=8e-21 Score=196.02 Aligned_cols=267 Identities=15% Similarity=0.109 Sum_probs=170.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEe-eCCeEecccceeEecCChhHHHHHHHcCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVT-ISGQTFEAGASILHPKNYHTVNFTKLLNL 98 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~~~lgl 98 (487)
..++|+|||||++||++|+.|++ .|++|+|+|+++++||+++++. .+|+.+|.|.+++...+.++.++++++|+
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~-----~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl 148 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLD-----QGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGA 148 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh-----CCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCC
Confidence 34699999999999999999999 9999999999999999999996 57899999999999888888899999998
Q ss_pred CCCCCCCCCCCceEEEE-cCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcC-ChHHHhHHHHHHHHHHHHhhhhcc
Q 043512 99 KPKDPPSSEDSTAFGIW-DGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGL-SLLRMESFTESAVDKFLKYYESFE 176 (487)
Q Consensus 99 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 176 (487)
.......... ...+. +|..-.+....+ +... ......++++.. +. .+++......+
T Consensus 149 ~~~~~~~~~~--~~~~~~~g~~~~~~~~~p-----~~~p----l~~~~~~l~~~~Ls~----------~dklr~~~~l~- 206 (569)
T PLN02487 149 DENLLVKDHT--HTFVNKGGDVGELDFRFP-----VGAP----LHGIKAFLTTNQLEP----------YDKARNALALA- 206 (569)
T ss_pred cccccccccc--eeEEecCCEEeeeccCCC-----CCch----hhhHHHHHcCCCCCH----------HHHHhhccccc-
Confidence 7654332211 11112 222111100000 1111 111112222211 10 00111000000
Q ss_pred CCCCCCCH-HHHHH----HcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHH--HHhhh--cCC
Q 043512 177 TRPVFESV-DEMLK----WAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAG--AVSLA--GSG 246 (487)
Q Consensus 177 ~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~--~~~~~--~~~ 246 (487)
.... ..+.. ........+.++.+|+.+++.++...+.++.+++...++.+. ++|+... .+.+. ...
T Consensus 207 ----~~~~~~al~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~ 282 (569)
T PLN02487 207 ----TSPVVRALVDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTE 282 (569)
T ss_pred ----ccchhhhccCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 0000 00000 001123456899999999998887888899999988888777 4775433 23321 222
Q ss_pred CC-ceEeecchHH-HHHHHHH---hcCCeEEeCCceEEEEEeC--CE---E-EEEE---ccCceEecCEEEEccCCCCCC
Q 043512 247 GG-LWAVEGGNWQ-MAAGLIN---RSDVALHLHEEIESISYLR--EY---Y-ELNS---TKGNSYTCQITVVATPLDELN 312 (487)
Q Consensus 247 ~g-~~~~~gG~~~-l~~~l~~---~~G~~i~~~~~V~~I~~~~--~~---v-~V~~---~~G~~~~ad~VV~a~~~~~~~ 312 (487)
.+ ..+++||... +++.+++ +.|++|+++++|++|..++ ++ + +|++ .+++.+.+|.||+|+|++...
T Consensus 283 ~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~ 362 (569)
T PLN02487 283 ASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIK 362 (569)
T ss_pred cceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHH
Confidence 23 6789999995 8888865 4599999999999999873 22 3 6666 334578999999999998653
Q ss_pred eeecCC
Q 043512 313 LHFSPP 318 (487)
Q Consensus 313 ~~l~p~ 318 (487)
.+.|+
T Consensus 363 -~Llp~ 367 (569)
T PLN02487 363 -RLLPE 367 (569)
T ss_pred -HhCCc
Confidence 34454
No 26
>PRK07208 hypothetical protein; Provisional
Probab=99.89 E-value=1.1e-21 Score=202.87 Aligned_cols=248 Identities=19% Similarity=0.169 Sum_probs=161.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLK 99 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~ 99 (487)
..+||+|||||++||+||++|++ +|++|+|+|+++++||++.+...+|+.+|.|++++...+..+.+++++++..
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~-----~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~ 77 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLK-----RGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFSKSPEVMDLWNEILPD 77 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHH-----CCCcEEEEecCCCCCceeeeeccCCceEccCCceeccCCHHHHHHHHHhcCC
Confidence 45789999999999999999999 9999999999999999999999999999999999998888888999999852
Q ss_pred CCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCC
Q 043512 100 PKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRP 179 (487)
Q Consensus 100 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (487)
......... ...+++|+.+.+.. .. .+.+. .. .... .... ...+.. .
T Consensus 78 ~~~~~~~~~--~~~~~~g~~~~~p~-----------~~---~~~l~---~~--~~~~---~~~~-~~~~~~--~------ 124 (479)
T PRK07208 78 DDFLLRPRL--SRIYYRGKFFDYPL-----------KA---FDALK---NL--GLWR---TAKC-GASYLK--A------ 124 (479)
T ss_pred Ccccccccc--ceEEECCEEecCCc-----------ch---hHHHH---hC--CHhH---HHHH-HHHHHH--H------
Confidence 221111111 12334554333210 00 00000 00 0000 0000 000000 0
Q ss_pred CCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHH-----------Hh-hhcC-
Q 043512 180 VFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGA-----------VS-LAGS- 245 (487)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~-----------~~-~~~~- 245 (487)
.........++.+|+.+. +...+.+.++.++....|+.++ +++....+ +. ....
T Consensus 125 -----------~~~~~~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 192 (479)
T PRK07208 125 -----------RLRPRKEEDSFEDWVINR-FGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRS 192 (479)
T ss_pred -----------hcCCCCCCCCHHHHHHHh-hCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhc
Confidence 000011357889998864 4567777788888888888766 46553211 10 0000
Q ss_pred --------------CCCceEeecchHHHHHHHHHhc---CCeEEeCCceEEEEEeCCEE--EEEE--ccCc--eEecCEE
Q 043512 246 --------------GGGLWAVEGGNWQMAAGLINRS---DVALHLHEEIESISYLREYY--ELNS--TKGN--SYTCQIT 302 (487)
Q Consensus 246 --------------~~g~~~~~gG~~~l~~~l~~~~---G~~i~~~~~V~~I~~~~~~v--~V~~--~~G~--~~~ad~V 302 (487)
.....+|+||++.++++|++.+ |++|++|++|++|..+++++ .+.. .+|+ ++.||+|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~V 272 (479)
T PRK07208 193 LGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQV 272 (479)
T ss_pred ccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEE
Confidence 1124578999999999998754 89999999999999987653 3332 2353 5899999
Q ss_pred EEccCCCCCCeeecC
Q 043512 303 VVATPLDELNLHFSP 317 (487)
Q Consensus 303 V~a~~~~~~~~~l~p 317 (487)
|+|+|++.+...+.|
T Consensus 273 I~a~p~~~l~~~l~~ 287 (479)
T PRK07208 273 ISSMPLRELVAALDP 287 (479)
T ss_pred EECCCHHHHHHhcCC
Confidence 999999865433433
No 27
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.88 E-value=3.2e-21 Score=177.76 Aligned_cols=257 Identities=16% Similarity=0.211 Sum_probs=178.4
Q ss_pred CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEe----eCCeEecccceeEec-CChhHH
Q 043512 16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVT----ISGQTFEAGASILHP-KNYHTV 90 (487)
Q Consensus 16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~----~~g~~~d~G~~~~~~-~~~~~~ 90 (487)
....+.++|+|||+|++|||||+.|++ -++||+||+.+++||+++|.. .+|..+|.|..++.. .++++.
T Consensus 3 ~~~~~r~~IAVIGsGisGLSAA~~Ls~------rhdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~ 76 (447)
T COG2907 3 NQPHPRRKIAVIGSGISGLSAAWLLSR------RHDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLT 76 (447)
T ss_pred CCCCCCcceEEEcccchhhhhHHhhhc------ccceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHH
Confidence 445567899999999999999999997 469999999999999999984 346789999999988 677888
Q ss_pred HHHHHcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHH
Q 043512 91 NFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLK 170 (487)
Q Consensus 91 ~~~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (487)
.+++.+|.+.+..... ..+. +|+..+.|..... -..-+.+.- .+ + ..++..++++.+..+..
T Consensus 77 ~Lf~~iGv~t~as~Ms---f~v~-~d~gglEy~g~tg-l~~L~aqk~-n~---l---------~pRf~~mlaeiLrf~r~ 138 (447)
T COG2907 77 RLFKTIGVDTKASFMS---FSVS-LDMGGLEYSGLTG-LAGLLAQKR-NL---L---------RPRFPCMLAEILRFYRS 138 (447)
T ss_pred HHHHHcCCCCccccee---EEEE-ecCCceeeccCCC-ccchhhccc-cc---c---------chhHHHHHHHHHHHhhh
Confidence 9999999887654322 1122 3556677753210 000011110 00 0 01122223332222221
Q ss_pred hhhhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchH--HHHHhhhc---
Q 043512 171 YYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGL--AGAVSLAG--- 244 (487)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~--~~~~~~~~--- 244 (487)
.. ...+ .......++.+||+.+++++.|.++++.++....+..+. ++..+ ..++-+..
T Consensus 139 ~~----------~~~d------~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhG 202 (447)
T COG2907 139 DL----------APSD------NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHG 202 (447)
T ss_pred hc----------cchh------hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccC
Confidence 00 0011 112346889999999999999999988888887777765 44332 22222221
Q ss_pred ----CCCCce-EeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC
Q 043512 245 ----SGGGLW-AVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN 312 (487)
Q Consensus 245 ----~~~g~~-~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~ 312 (487)
.....| .+.||..+.++.|.+..+++|+++++|..|.+-.+++.|...+|++-++|.||+|+.+.+.-
T Consensus 203 ll~l~~rp~wrtV~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl 275 (447)
T COG2907 203 LLYLPKRPTWRTVAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQAL 275 (447)
T ss_pred ceecCCCCceeEcccchHHHHHHHhccccceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHH
Confidence 133466 57899999999999999999999999999999888888877889999999999999988653
No 28
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.85 E-value=3.2e-19 Score=181.56 Aligned_cols=239 Identities=15% Similarity=0.119 Sum_probs=151.7
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeE--ecccceeEecCChhHHHHHHHcCCCCCCCCCCCCCceE
Q 043512 35 SLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQT--FEAGASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAF 112 (487)
Q Consensus 35 saA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~--~d~G~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~ 112 (487)
+||+.|++ +|++|+|||+++++||+++|+..+|+. +|.|+++++..+..+.++++++|+.......... +
T Consensus 1 ~AA~~L~~-----~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~---~ 72 (419)
T TIGR03467 1 SAAVELAR-----AGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGPRLP---L 72 (419)
T ss_pred ChHHHHHh-----CCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchhhhcccCC---c
Confidence 58999999 999999999999999999999988654 9999999998888888999999987653311111 1
Q ss_pred EEE--cCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhc-CChHHHhHHHHHHHHHHHHhhhhccCCCCCCCHHHHHH
Q 043512 113 GIW--DGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYG-LSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLK 189 (487)
Q Consensus 113 ~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (487)
.+. ++....+...+ ++.+. .....+.+.. .+.....++.. .+.....
T Consensus 73 ~~~~~~~~~~~~~~~~------~~~p~----~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~---------------- 122 (419)
T TIGR03467 73 PFYDPGGRLSRLRLSR------LPAPL----HLARGLLRAPGLSWADKLALAR----ALLALRR---------------- 122 (419)
T ss_pred ceecCCCCceeecCCC------CCCCH----HHHHHHhcCCCCCHHHHHHHHH----HHHHHHh----------------
Confidence 222 22221221100 00000 0000000000 01110001100 0000000
Q ss_pred HcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHHHhh----hc--CCCCceEeecchHHHHHH
Q 043512 190 WAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGAVSL----AG--SGGGLWAVEGGNWQMAAG 262 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~----~~--~~~g~~~~~gG~~~l~~~ 262 (487)
.........++.+|+++.+.++.+.+.++.++....|+.++ ++++...+..+ .. ...+.++++||+++++..
T Consensus 123 -~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~ 201 (419)
T TIGR03467 123 -TRFRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPE 201 (419)
T ss_pred -cCccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHH
Confidence 00112356899999999888888877788888887787766 47664333221 11 122467899999887655
Q ss_pred -HHH---hcCCeEEeCCceEEEEEeCCEEEEEE-ccCceEecCEEEEccCCCCCC
Q 043512 263 -LIN---RSDVALHLHEEIESISYLREYYELNS-TKGNSYTCQITVVATPLDELN 312 (487)
Q Consensus 263 -l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~-~~G~~~~ad~VV~a~~~~~~~ 312 (487)
|++ +.|++|++|++|++|..+++++.+.. .+|+++.||.||+|+|++...
T Consensus 202 ~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~ 256 (419)
T TIGR03467 202 PARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRHAA 256 (419)
T ss_pred HHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHHHH
Confidence 655 34999999999999999888764433 467789999999999998754
No 29
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.83 E-value=1.8e-19 Score=183.98 Aligned_cols=65 Identities=29% Similarity=0.380 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeC--CeEecccceeEecCChhHHHHHHHcCCCC
Q 043512 31 IGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS--GQTFEAGASILHPKNYHTVNFTKLLNLKP 100 (487)
Q Consensus 31 iaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~--g~~~d~G~~~~~~~~~~~~~~~~~lgl~~ 100 (487)
|+||+||++|++ +|++|+|||+++++|||++|.+.+ |+.+|.|+++++..+..+..++.++++..
T Consensus 1 iaGL~aA~~L~~-----~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l~~~~ 67 (450)
T PF01593_consen 1 IAGLAAAYYLAK-----AGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDELGLEL 67 (450)
T ss_dssp HHHHHHHHHHHH-----TTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHHTHHT
T ss_pred ChHHHHHHHHHh-----CCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHhhhcc
Confidence 699999999999 999999999999999999999999 99999999999988777778888888753
No 30
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.82 E-value=1.2e-19 Score=162.29 Aligned_cols=165 Identities=22% Similarity=0.354 Sum_probs=121.9
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCCCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKPK 101 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~~ 101 (487)
.+|+|||+||+||+||+.|+. +|++|+||||..-+|||+.|.+..+..||.|+++|...+..+.++.+.+.-...
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~-----aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~gl 76 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALRE-----AGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGL 76 (331)
T ss_pred CcEEEEccchHHHHHHHHHHh-----cCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCc
Confidence 469999999999999999999 999999999999999999999999999999999998888765566665542211
Q ss_pred CCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCCCC
Q 043512 102 DPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVF 181 (487)
Q Consensus 102 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (487)
.. .|....+.+..+ ...
T Consensus 77 V~----------~W~~~~~~~~~~---------------------------------------------------~~~-- 93 (331)
T COG3380 77 VD----------VWTPAVWTFTGD---------------------------------------------------GSP-- 93 (331)
T ss_pred ee----------eccccccccccC---------------------------------------------------CCC--
Confidence 10 010000011000 000
Q ss_pred CCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhhcCCCCceEeecchHHHHH
Q 043512 182 ESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMAA 261 (487)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~gG~~~l~~ 261 (487)
.+ .....|.-.-||.+|++
T Consensus 94 ~~-------------------------------------------------------------~d~~pyvg~pgmsalak 112 (331)
T COG3380 94 PR-------------------------------------------------------------GDEDPYVGEPGMSALAK 112 (331)
T ss_pred CC-------------------------------------------------------------CCCCccccCcchHHHHH
Confidence 00 00011444567999999
Q ss_pred HHHHhcCCeEEeCCceEEEEEeCCEEEEEEccC-ceEecCEEEEccCCCCCCeeecC
Q 043512 262 GLINRSDVALHLHEEIESISYLREYYELNSTKG-NSYTCQITVVATPLDELNLHFSP 317 (487)
Q Consensus 262 ~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G-~~~~ad~VV~a~~~~~~~~~l~p 317 (487)
.|+..+ +|.++++|++|.+.++.+++.+++| +...+|.||+|.|.+++...|.+
T Consensus 113 ~LAtdL--~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~ 167 (331)
T COG3380 113 FLATDL--TVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTT 167 (331)
T ss_pred HHhccc--hhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhcCc
Confidence 998877 7889999999999999999999665 56889999999999987655544
No 31
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.80 E-value=4.1e-18 Score=171.16 Aligned_cols=251 Identities=11% Similarity=0.144 Sum_probs=149.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeC--------------------CeEeccc
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS--------------------GQTFEAG 78 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~--------------------g~~~d~G 78 (487)
++.+||||||+|++|+.+|..|++ +|++|+++|+++..||+.+|++.. .+.+|+.
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~-----~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~ 76 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSV-----NGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLI 76 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhh-----CCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccC
Confidence 457999999999999999999999 999999999999999999997432 2346667
Q ss_pred ceeEecCChhHHHHHHHcCCCCCCCCCCCCCceEEE--EcCCeeEEEeccCCCCcc-hhhhhHHHHHHHHHHHHhcCChH
Q 043512 79 ASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGI--WDGSKFVFKTISVSSTVP-FVQKIVSLANSVLMVLRYGLSLL 155 (487)
Q Consensus 79 ~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 155 (487)
+.++...... ..++...++.......... ...+ .+|+.... |.+... |...+..+.++ .
T Consensus 77 Pk~l~~~G~l-v~lL~~s~v~ryleF~~l~--g~~v~~~~g~~~~v----P~s~~~~~~s~ll~l~eK-----------r 138 (443)
T PTZ00363 77 PKFIMASGEL-VKILLHTDVTRYLEFKVID--GSYVYQKEGKIHKV----PATDMEALSSPLMGFFEK-----------N 138 (443)
T ss_pred CeeeecCChH-HHHHhhcCccceeeeEEec--eEEEEecCCeEEEC----CCCHHHHhhCCCcchhhH-----------H
Confidence 7776665533 3566666665543321111 1222 23332222 111111 22222222221 1
Q ss_pred HHhHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-Ccc
Q 043512 156 RMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SIS 234 (487)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~ 234 (487)
++.+|+. ....+.. .... .+ .-..+...++.+|+++.++++...+.+.. ++.......+ +.+
T Consensus 139 ~l~kfl~--------~v~~~~~----~~~~-~~---~~~~~d~~T~~d~L~~~~ls~~~~d~i~~-~ial~~~~~~~~~p 201 (443)
T PTZ00363 139 RCKNFLQ--------YVSNYDE----NDPE-TH---KGLNLKTMTMAQLYKKFGLEDNTIDFVGH-AVALYTNDDYLNKP 201 (443)
T ss_pred HHHHHHH--------HHHhhcc----CChh-hh---cccCcccCCHHHHHHHhCCCHHHHHHHHH-HHHhhcccccccCC
Confidence 2222222 2111111 0110 01 11123468999999999998876653322 2222211111 222
Q ss_pred hHHHHH-------hhhcCCC-CceEeecchHHHHHHHHH---hcCCeEEeCCceEEEEEeCC-E-EEEEEccCceEecCE
Q 043512 235 GLAGAV-------SLAGSGG-GLWAVEGGNWQMAAGLIN---RSDVALHLHEEIESISYLRE-Y-YELNSTKGNSYTCQI 301 (487)
Q Consensus 235 ~~~~~~-------~~~~~~~-g~~~~~gG~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~-~-v~V~~~~G~~~~ad~ 301 (487)
+..++. ++..+.. +..+|.+|+++|+++|++ ..|++++++++|++|..+++ + ++|++.+|+++.|+.
T Consensus 202 a~~tl~ri~~y~~S~~~~g~~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~ 281 (443)
T PTZ00363 202 AIETVMRIKLYMDSLSRYGKSPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKL 281 (443)
T ss_pred HHHHHHHHHHHHHHHhhccCCcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCE
Confidence 222211 1122222 346889999999999985 46999999999999988753 4 589999999999999
Q ss_pred EEEccCCC
Q 043512 302 TVVATPLD 309 (487)
Q Consensus 302 VV~a~~~~ 309 (487)
||++....
T Consensus 282 VV~~~s~~ 289 (443)
T PTZ00363 282 VICDPSYF 289 (443)
T ss_pred EEECcccc
Confidence 99976653
No 32
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.77 E-value=1.2e-17 Score=159.22 Aligned_cols=73 Identities=15% Similarity=0.137 Sum_probs=65.0
Q ss_pred CCceEeecchHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCCCCeeecCCC
Q 043512 247 GGLWAVEGGNWQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDELNLHFSPPI 319 (487)
Q Consensus 247 ~g~~~~~gG~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~~~~~l~p~~ 319 (487)
++..||.||+++++.++++ +.|++|.+++.|.+|..+++++ +|+++||+.+.++.||+|+.+|.+..+|.|+.
T Consensus 254 g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e 330 (561)
T KOG4254|consen 254 GGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGE 330 (561)
T ss_pred CcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCc
Confidence 3455999999999999976 4699999999999999998875 99999999999999999999999987777764
No 33
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.63 E-value=7.3e-16 Score=112.96 Aligned_cols=66 Identities=33% Similarity=0.563 Sum_probs=58.5
Q ss_pred EECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecC--ChhHHHHHHHc
Q 043512 26 IIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPK--NYHTVNFTKLL 96 (487)
Q Consensus 26 IIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~--~~~~~~~~~~l 96 (487)
|||||++||+||+.|++ +|++|+|+|+++++||++++...+|+.+|.|++++... ++++.+++++|
T Consensus 1 IiGaG~sGl~aA~~L~~-----~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK-----AGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHH-----TTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHH-----CCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 89999999999999999 99999999999999999999999999999999999874 46677777654
No 34
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.62 E-value=2.1e-14 Score=145.87 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=61.3
Q ss_pred CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEe--eCCeEecccceeEecCChhHHHHH
Q 043512 16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVT--ISGQTFEAGASILHPKNYHTVNFT 93 (487)
Q Consensus 16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~--~~g~~~d~G~~~~~~~~~~~~~~~ 93 (487)
+...+.++|+|||||+||||||++|++..+ -+|.+|+|||+++.+||++.+.. .+|+.++.|++. ......+.+++
T Consensus 17 ~~~~~~~~a~IIGaGiAGLAAA~~L~~dg~-~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~-~~~y~~l~~ll 94 (576)
T PRK13977 17 PEGVDNKKAYIIGSGLASLAAAVFLIRDGQ-MPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM-ENHFECLWDLF 94 (576)
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHHccC-CCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc-cchHHHHHHHH
Confidence 344456899999999999999999999210 02689999999999999998754 678999888774 44455566777
Q ss_pred HHc
Q 043512 94 KLL 96 (487)
Q Consensus 94 ~~l 96 (487)
+.+
T Consensus 95 ~~i 97 (576)
T PRK13977 95 RSI 97 (576)
T ss_pred Hhc
Confidence 665
No 35
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=4.9e-14 Score=139.31 Aligned_cols=256 Identities=14% Similarity=0.109 Sum_probs=142.4
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEee-CCeEecccceeEecCChhHHHHHHHcCCCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTI-SGQTFEAGASILHPKNYHTVNFTKLLNLKP 100 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~-~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~ 100 (487)
++|+|+|||+|||+||+.|++ +|++|+|+|+++++||.+.+.+. +|...|+|-|+|.+.+.++..++++++...
T Consensus 1 ~rVai~GaG~AgL~~a~~La~-----~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~ 75 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELAD-----AGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIED 75 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHh-----CCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchh
Confidence 579999999999999999999 99999999999999999999875 578899999999999999889999988764
Q ss_pred CCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhH-HHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCC
Q 043512 101 KDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIV-SLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRP 179 (487)
Q Consensus 101 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (487)
........ . ...-.+ +.+|....+..... ..+.....+.+.+. .. ...+....... .
T Consensus 76 ~~~~~~~~-~-~~~~~~-------~~~g~~~~~~~~~~p~p~~~~~~~l~~~~-------~~--~~~~~~~~~~l----~ 133 (485)
T COG3349 76 RLQLREHT-K-TFVGSG-------TRPGAIGRFARPDAPQPTNGLKAFLRLPQ-------LP--RREKIRFVLRL----G 133 (485)
T ss_pred eeehHhhh-h-hhcccC-------CCCCcccccccCCCCCcchhhhhhhhccc-------cC--HHHHhHHhhcc----c
Confidence 43321110 0 000000 00111000000000 00111111111110 00 00011111110 0
Q ss_pred CCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHH-HHHHhhcCCCCCcch-----HHHHHhhhcCCCC-ceEe
Q 043512 180 VFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVT-IITRINYGQSLSISG-----LAGAVSLAGSGGG-LWAV 252 (487)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-----~~~~~~~~~~~~g-~~~~ 252 (487)
.... . ....+.++++.++.+||++.+.+.....+.+. ......|..+-.+|+ ++.++.+.....+ .+.+
T Consensus 134 ~~~~-g---~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~ 209 (485)
T COG3349 134 DAPI-G---ADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNL 209 (485)
T ss_pred cccc-h---hHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhh
Confidence 0000 0 01123467889999999998876554444443 333445665545554 2223333321222 4455
Q ss_pred ecchHHH-HHH---HHHhcCCeEEeCCceEEEEEeC---C--EEEEEEccCce---EecCEEEEccCCC
Q 043512 253 EGGNWQM-AAG---LINRSDVALHLHEEIESISYLR---E--YYELNSTKGNS---YTCQITVVATPLD 309 (487)
Q Consensus 253 ~gG~~~l-~~~---l~~~~G~~i~~~~~V~~I~~~~---~--~v~V~~~~G~~---~~ad~VV~a~~~~ 309 (487)
+|++... ... .+.+.|.+++.+.+|+.|..+. . .+++... +.. ..++.++.+.+..
T Consensus 210 ~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~ 277 (485)
T COG3349 210 RGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQ 277 (485)
T ss_pred cCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccc
Confidence 6665542 222 3445699999999999998764 2 2355443 433 3445555554443
No 36
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.52 E-value=6e-13 Score=130.88 Aligned_cols=235 Identities=15% Similarity=0.226 Sum_probs=134.4
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeE-ecccceeEecCChhHHHHHHHcCCCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQT-FEAGASILHPKNYHTVNFTKLLNLKP 100 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~-~d~G~~~~~~~~~~~~~~~~~lgl~~ 100 (487)
+||+|||||++|+++|+.|++ .|.+|+|+|+++.+||.+.+....|.. .+.|+++++..+..+.+++..+.-.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~-----~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t~~~~v~~~~~~~~~~- 75 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQ-----LNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHTNNQYVWDYISPFFEL- 75 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHh-----CCCeEEEEecCCCCCCceeeecCCCceEEeecceeEecCcHHHHHHHHhhccc-
Confidence 699999999999999999999 999999999999999999987766654 4899999998887666766665311
Q ss_pred CCCCCCCCCceEEEEcCCeeEEEeccCCCCcchh-hhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCC
Q 043512 101 KDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFV-QKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRP 179 (487)
Q Consensus 101 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (487)
... . . ....+.+|+.+.+. +. ..+..+.+.. .......++. ..... ....
T Consensus 76 ~~~-~--~-~~~~~~~g~~~~~P---------~~~~~i~~l~~~~--------~~~~~~~~l~-------~~~~~-~~~~ 126 (377)
T TIGR00031 76 NNY-Q--H-RVLALYNNLDLTLP---------FNFNQFRKLLGVK--------DAQELQNFFN-------AQFKY-GDHV 126 (377)
T ss_pred cce-e--E-EEEEEECCeEEccC---------CCHHHHHHhcccc--------hHHHHHHHHH-------HHhhc-ccCC
Confidence 111 1 0 11344566544442 10 0011111000 0011111111 11000 0000
Q ss_pred CCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchH-HHHHhh----hc-CCC--Cce
Q 043512 180 VFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGL-AGAVSL----AG-SGG--GLW 250 (487)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~-~~~~~~----~~-~~~--g~~ 250 (487)
+..+..++.. +... .+.+.+.+.++..++...+|.++ ++++- .+-+.. .+ +.. -..
T Consensus 127 ~~~~~~e~~d--------------~~~~-~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~ 191 (377)
T TIGR00031 127 PLEELQEIAD--------------PDIQ-LLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQG 191 (377)
T ss_pred CCCCHHHHHH--------------HHHH-HHHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccc
Confidence 1122222210 0011 12233344455566666677665 45542 221111 11 111 145
Q ss_pred EeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 251 AVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 251 ~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
+|++|..+++++|++.-+.+|++|+.+..+..+++++.+ .++ .+. +.||.+.|+..
T Consensus 192 ~P~~Gyt~~~~~ml~~~~i~v~l~~~~~~~~~~~~~~~~--~~~-~~~-~~vi~Tg~id~ 247 (377)
T TIGR00031 192 LPKGGYTKLFEKMLDHPLIDVKLNCHINLLKDKDSQLHF--ANK-AIR-KPVIYTGLIDQ 247 (377)
T ss_pred cccccHHHHHHHHHhcCCCEEEeCCccceeeccccceee--ccc-ccc-CcEEEecCchH
Confidence 899999999999998888999999988888765444433 233 333 88999988864
No 37
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.49 E-value=3.2e-13 Score=129.00 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=54.0
Q ss_pred CCceEee-cchHHHHHHHHHh---cCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccC
Q 043512 247 GGLWAVE-GGNWQMAAGLINR---SDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATP 307 (487)
Q Consensus 247 ~g~~~~~-gG~~~l~~~l~~~---~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~ 307 (487)
.|..+|. .....|++.|+.+ .||+|+++++|.+|..++.+..|.+++|+++.||.+|+|++
T Consensus 100 ~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 100 LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence 4655666 7788999999775 59999999999999999988999999998999999999999
No 38
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.48 E-value=6.5e-13 Score=126.78 Aligned_cols=250 Identities=20% Similarity=0.255 Sum_probs=144.5
Q ss_pred CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCCCccceeEE-EeeCCeEecccceeEecCCh---hHH
Q 043512 17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNGVVGGRMAT-VTISGQTFEAGASILHPKNY---HTV 90 (487)
Q Consensus 17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~~~GGr~~s-~~~~g~~~d~G~~~~~~~~~---~~~ 90 (487)
..-+.++|+|+|||++||++||+|++ .+. .|+|+|+.+|+||.++| ...+|+.||.|+..+.+..+ .+.
T Consensus 7 ~~~~~~~vaVvGGGiSGL~aay~L~r-----~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l 81 (491)
T KOG1276|consen 7 EAVSGMTVAVVGGGISGLCAAYYLAR-----LGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETL 81 (491)
T ss_pred cceecceEEEECCchhHHHHHHHHHh-----cCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHH
Confidence 34467899999999999999999999 554 45669999999999999 44568999999998887655 466
Q ss_pred HHHHHcCCCCCCCCCC-CC---CceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHH
Q 043512 91 NFTKLLNLKPKDPPSS-ED---STAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVD 166 (487)
Q Consensus 91 ~~~~~lgl~~~~~~~~-~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (487)
+++..+|++.+...-. .. ..++.++.|.-....+...+... + -++.+.+-...
T Consensus 82 ~lv~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~-~----------------------~l~p~~k~L~~ 138 (491)
T KOG1276|consen 82 DLVSDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLK-F----------------------SLQPFGKPLLE 138 (491)
T ss_pred HHHHHcCccceeeecCCCChhhhheeeccCcccccCCcccccccc-c----------------------ccCcccchhHH
Confidence 8999999975443211 11 11222333322221110000000 0 00000000000
Q ss_pred HHHHhhhhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-Ccch--HHHHHhhh
Q 043512 167 KFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISG--LAGAVSLA 243 (487)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~--~~~~~~~~ 243 (487)
.|. .++.+...-....+.++.+|.+++- .++..+.+..++.+..|+.+. +++. .+..++..
T Consensus 139 a~l---------------~e~fr~~~~~~~~dESV~sF~~Rrf-G~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~ 202 (491)
T KOG1276|consen 139 AFL---------------RELFRKKVSDPSADESVESFARRRF-GKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKV 202 (491)
T ss_pred HHH---------------hhhccccCCCCCccccHHHHHHHhh-hHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHH
Confidence 000 0111111112234566666665543 366667777888888887665 3432 33333321
Q ss_pred c---------------------------------CCCCceEeecchHHHHHHHHHhc---CCeEEeCCceEEEEEeC-CE
Q 043512 244 G---------------------------------SGGGLWAVEGGNWQMAAGLINRS---DVALHLHEEIESISYLR-EY 286 (487)
Q Consensus 244 ~---------------------------------~~~g~~~~~gG~~~l~~~l~~~~---G~~i~~~~~V~~I~~~~-~~ 286 (487)
+ ..+..|..+||...+++++-+.+ ++.|.+.-++..+.... ++
T Consensus 203 Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~ 282 (491)
T KOG1276|consen 203 EQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGN 282 (491)
T ss_pred HHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCC
Confidence 1 12346778999999999998765 46667777888777643 44
Q ss_pred E--EEEEccCc-eEecCEEEEccCCCC
Q 043512 287 Y--ELNSTKGN-SYTCQITVVATPLDE 310 (487)
Q Consensus 287 v--~V~~~~G~-~~~ad~VV~a~~~~~ 310 (487)
+ +++..++. ....++++.+.|...
T Consensus 283 ~~~tl~~~~~~~~~~~~~~~~t~~~~k 309 (491)
T KOG1276|consen 283 WSLTLVDHSGTQRVVVSYDAATLPAVK 309 (491)
T ss_pred ceeEeEcCCCceeeeccccccccchHH
Confidence 5 44445552 234455555666554
No 39
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.40 E-value=3.5e-12 Score=127.17 Aligned_cols=63 Identities=17% Similarity=0.306 Sum_probs=42.7
Q ss_pred CCceEeec-chHHHHHHHHH---hcCCeEEeCCceEEEEEeCCE-EEEEEccCceEecCEEEEccCCC
Q 043512 247 GGLWAVEG-GNWQMAAGLIN---RSDVALHLHEEIESISYLREY-YELNSTKGNSYTCQITVVATPLD 309 (487)
Q Consensus 247 ~g~~~~~g-G~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~a~~~~ 309 (487)
.|..||.. -...+++.|.+ +.|++|+++++|++|+.++++ +.|++++++.+.||.||+|++-.
T Consensus 98 ~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~ 165 (409)
T PF03486_consen 98 DGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGK 165 (409)
T ss_dssp TTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----S
T ss_pred CCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCC
Confidence 35555554 35667777755 569999999999999998887 69999677799999999998854
No 40
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.36 E-value=2.7e-12 Score=127.44 Aligned_cols=64 Identities=20% Similarity=0.274 Sum_probs=51.5
Q ss_pred CceEeecc---hHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEE-EEEccCceEecCEEEEccCCCCCC
Q 043512 248 GLWAVEGG---NWQMAAGLIN---RSDVALHLHEEIESISYLREYYE-LNSTKGNSYTCQITVVATPLDELN 312 (487)
Q Consensus 248 g~~~~~gG---~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VV~a~~~~~~~ 312 (487)
+.+.+.+| ..++.++|.+ +.|++|+.+++|++|..+++++. |+|.+|+ +.||.||+|++++...
T Consensus 135 ~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 135 GVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp EEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred hhcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEeccccccee
Confidence 56677777 6778887765 45999999999999999999985 9999996 9999999999998643
No 41
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.35 E-value=2.3e-11 Score=123.49 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=46.4
Q ss_pred CceEeecch---HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEccC-----ceEecCEEEEccCCCCC
Q 043512 248 GLWAVEGGN---WQMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKG-----NSYTCQITVVATPLDEL 311 (487)
Q Consensus 248 g~~~~~gG~---~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~~G-----~~~~ad~VV~a~~~~~~ 311 (487)
+.|.+.+|. ..+...|++ +.|++|+.+++|++|..+++++.+.+.++ .+++||.||+|++.+..
T Consensus 185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 455555432 345555544 45999999999999998888776654332 36899999999999864
No 42
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.35 E-value=9.5e-11 Score=108.85 Aligned_cols=88 Identities=16% Similarity=0.178 Sum_probs=59.6
Q ss_pred HHHHHHHhcCCeEEeCCceEEEEEe---CCEEEEEEccCceEecCEEEEccCCCCCCeeecCC---CCCCCcCeEEEEEE
Q 043512 259 MAAGLINRSDVALHLHEEIESISYL---REYYELNSTKGNSYTCQITVVATPLDELNLHFSPP---ISIPERKLQHTHAT 332 (487)
Q Consensus 259 l~~~l~~~~G~~i~~~~~V~~I~~~---~~~v~V~~~~G~~~~ad~VV~a~~~~~~~~~l~p~---~~~~~~~~~~~~~~ 332 (487)
..+-.++.+|+.++.+..|+.+... +..+.|+|.+|..+.|+.+|+|++.|.+. |+|+ ...+....+.+...
T Consensus 158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k--lL~~~~~~~~Pv~~i~ltvcy 235 (399)
T KOG2820|consen 158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK--LLPTSLAIGFPVAPIQLTVCY 235 (399)
T ss_pred HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh--hcCcccccCCccceeEeehhh
Confidence 3344566789999999999999853 34579999999889999999999999754 2332 23455555554444
Q ss_pred EeeCCcCcccccCCCC
Q 043512 333 FVRGALNPAYFGLDGV 348 (487)
Q Consensus 333 ~~~~~l~~~y~g~~~~ 348 (487)
|....-++.|+..+..
T Consensus 236 wk~~~~~~~~l~~d~~ 251 (399)
T KOG2820|consen 236 WKTKKNMPVYLFDDDC 251 (399)
T ss_pred heeecCCceeecCCCC
Confidence 4333334455555544
No 43
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.32 E-value=2.1e-11 Score=120.42 Aligned_cols=66 Identities=23% Similarity=0.346 Sum_probs=51.0
Q ss_pred CceEeecc---hHHHHHHHHHh---cCCeEEeCCceEEEEEeCCE-EEEEEccCce-EecCEEEEccCCCCCCe
Q 043512 248 GLWAVEGG---NWQMAAGLINR---SDVALHLHEEIESISYLREY-YELNSTKGNS-YTCQITVVATPLDELNL 313 (487)
Q Consensus 248 g~~~~~gG---~~~l~~~l~~~---~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~-~~ad~VV~a~~~~~~~~ 313 (487)
+.|.+.+| ...+..+|++. .|++|++|++|+.|++++++ ..+.|.+|+. ++|+.||.|++.....+
T Consensus 141 al~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~l 214 (429)
T COG0579 141 ALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPL 214 (429)
T ss_pred eEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHH
Confidence 34555554 35666677653 49999999999999998884 5777888866 99999999999987543
No 44
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.32 E-value=2e-11 Score=123.02 Aligned_cols=63 Identities=13% Similarity=0.196 Sum_probs=50.0
Q ss_pred CceEeecc---hHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 248 GLWAVEGG---NWQMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 248 g~~~~~gG---~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
+.|.+.+| ...+.++|.+ +.|++|+++++|++|..+++++.|.+.+| ++.||.||+|++.+..
T Consensus 137 al~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 137 AIFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSD 205 (393)
T ss_pred eEEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchH
Confidence 44555554 3567777764 45999999999999998888888888777 7999999999999863
No 45
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.31 E-value=2.1e-11 Score=125.26 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=47.7
Q ss_pred CceEeecch---HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 248 GLWAVEGGN---WQMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 248 g~~~~~gG~---~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
|.|.+.+|. .+++++|++ +.|++|+.+++|++|+. ++.+.|+|.+| ++.||+||+|++.+..
T Consensus 171 g~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 171 GFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred EEEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence 456665553 456677754 46999999999999985 45567888888 7999999999998754
No 46
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.29 E-value=8.7e-11 Score=118.00 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=43.8
Q ss_pred HHHHHHH---HHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 257 WQMAAGL---INRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 257 ~~l~~~l---~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
..+.+.| +++.|++++.+++|++|..+++++.|++.+| ++.+|.||+|++.+..
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTS 201 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchH
Confidence 3444444 3456999999999999998888888888777 7999999999998854
No 47
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=1.1e-10 Score=107.82 Aligned_cols=229 Identities=13% Similarity=0.211 Sum_probs=131.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeC--Ce-EecccceeEecCChhHHHHHHHcC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS--GQ-TFEAGASILHPKNYHTVNFTKLLN 97 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~--g~-~~d~G~~~~~~~~~~~~~~~~~lg 97 (487)
+.|++|||||++|+..|..|++ .|++|+|+||++.+||.|.+...+ |. ..--|+|+||..+..+++++..+-
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~-----~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~ 75 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQ-----LGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFT 75 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHH-----cCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhh
Confidence 3699999999999999999999 999999999999999999987653 54 356799999999998888888765
Q ss_pred CCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccC
Q 043512 98 LKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFET 177 (487)
Q Consensus 98 l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (487)
-...-.. ..+.+.+|..+.+.- . .+....+|--..++...+.+++.... .. .
T Consensus 76 e~~~Y~h-----rVla~~ng~~~~lP~-----------n----l~ti~ql~G~~~~p~~a~~~i~~~~~-------~~-~ 127 (374)
T COG0562 76 EFNPYQH-----RVLALVNGQLYPLPF-----------N----LNTINQLFGKNFTPDEARKFIEEQAA-------EI-D 127 (374)
T ss_pred hhhhhcc-----ceeEEECCeeeeccc-----------c----HHHHHHHhCccCCHHHHHHHHHHhhc-------cc-c
Confidence 3222111 125556776655521 1 11111111111122222222221100 00 0
Q ss_pred CCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-Ccch-HHHHHhhh----c-CCCCce
Q 043512 178 RPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISG-LAGAVSLA----G-SGGGLW 250 (487)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~-~~~~~~~~----~-~~~g~~ 250 (487)
.....+.++.. -.-++ +.+...+...++...||.++ ++++ +-.-+... . +-...|
T Consensus 128 ~~~~q~~ee~a---------is~vg---------~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~y 189 (374)
T COG0562 128 IAEPQNLEEQA---------ISLVG---------RDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTY 189 (374)
T ss_pred ccchhhhhhHH---------HHHHH---------HHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCccc
Confidence 00011111110 00111 22223344455555566555 4554 22222110 0 111122
Q ss_pred --EeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 251 --AVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 251 --~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
.|++|+-++++.|++.-..+|++||.-..|.... ++ +.+..||-+.|+..
T Consensus 190 QGlP~~GYT~~~~kMl~hp~I~V~Lntd~~~~~~~~--------~~--~~~~~VvytG~iD~ 241 (374)
T COG0562 190 QGLPKDGYTAMFEKMLDHPNIDVRLNTDFFDVKDQL--------RA--IPFAPVVYTGPIDA 241 (374)
T ss_pred ccCccccHHHHHHHHhcCCCceEEecCcHHHHhhhh--------cc--cCCCceEEecchHh
Confidence 5899999999999998788999999866654321 11 45668888888764
No 48
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.22 E-value=2.6e-10 Score=122.35 Aligned_cols=66 Identities=18% Similarity=0.379 Sum_probs=52.8
Q ss_pred CCceEeecch---HHHHHHHHHhc--CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC
Q 043512 247 GGLWAVEGGN---WQMAAGLINRS--DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN 312 (487)
Q Consensus 247 ~g~~~~~gG~---~~l~~~l~~~~--G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~ 312 (487)
.+.|++.+|. ..++++|++.. |++|+.+++|++|..+++++.|.+++|..+.||.||+|++.+...
T Consensus 395 ~g~~~p~~G~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~~ 465 (662)
T PRK01747 395 GGIFYPQGGWLCPAELCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAAR 465 (662)
T ss_pred CcEEeCCCCeeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCccc
Confidence 3566666663 46777776533 799999999999998888888988888778899999999998753
No 49
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.21 E-value=3.3e-10 Score=115.25 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=48.2
Q ss_pred CceEeecc---hHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCCC
Q 043512 248 GLWAVEGG---NWQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 248 g~~~~~gG---~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
+.|.+.+| ...++.+|++ +.|++|+++++|++|+.+++++ .|++.++ ++.||.||+|++.+..
T Consensus 189 a~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 189 GLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYST 258 (416)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchH
Confidence 45555544 3456666654 4599999999999999887776 5777666 7999999999999864
No 50
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.21 E-value=3.1e-10 Score=99.40 Aligned_cols=42 Identities=31% Similarity=0.482 Sum_probs=38.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
...||+|||||++||+|||+|++ +|.+|+|+||+-.+||-++
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk-----~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAK-----AGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHh-----CCceEEEEEeecccCCccc
Confidence 35799999999999999999999 9999999999999988554
No 51
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.21 E-value=1.2e-09 Score=108.80 Aligned_cols=247 Identities=18% Similarity=0.182 Sum_probs=131.6
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEee---------------------CCeEecc
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTI---------------------SGQTFEA 77 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~---------------------~g~~~d~ 77 (487)
+..+||||+|.|+.-.-.|..|++ .|++|+.+|+++..||..+++.. ..+.+|+
T Consensus 2 ~~~yDviI~GTGl~esila~als~-----~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL 76 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSR-----SGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDL 76 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHH-----TT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EES
T ss_pred CccceEEEECCCcHHHHHHHHHHh-----cCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEec
Confidence 567999999999999999999999 99999999999999999999873 1356788
Q ss_pred cceeEecCChhHHHHHHHcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcc-hhhhhHHHHHHHHHHHHhcCChHH
Q 043512 78 GASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVP-FVQKIVSLANSVLMVLRYGLSLLR 156 (487)
Q Consensus 78 G~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 156 (487)
-|.++......+ +++-.-++.......... ..+.+.+|+-.... .+..+ |......+..+ .+
T Consensus 77 ~PKll~a~g~LV-~lLi~S~V~rYLEFk~V~-~~~v~~~~~l~kVP----~sr~dvf~s~~lsl~eK-----------R~ 139 (438)
T PF00996_consen 77 IPKLLYARGPLV-KLLISSGVTRYLEFKAVD-GSYVYKNGKLHKVP----CSREDVFKSKLLSLFEK-----------RR 139 (438)
T ss_dssp S--BEETTSHHH-HHHHHCTGGGGSEEEEES-EEEEEETTEEEE------SSHHHHHC-TTS-HHHH-----------HH
T ss_pred chHhhhccCHHH-HHHHhCCcccceEEEEcc-eeEEEeCCEEeeCC----CCHHHhhcCCCccHHHH-----------HH
Confidence 888777666433 555555554432221100 01223333222221 11111 22222222221 12
Q ss_pred HhHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC--Ccc
Q 043512 157 MESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL--SIS 234 (487)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~ 234 (487)
+.+ |......+.... ... ..-.+....++.+++++.++.+..++.+..++.- +..+. +.|
T Consensus 140 lmk--------Fl~~v~~~~~~~----~~~----~~~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL--~~~~~~~~~p 201 (438)
T PF00996_consen 140 LMK--------FLKFVANYEEDD----PST----HKGLDPEKKTFQELLKKFGLSENLIDFIGHAIAL--SLDDSYLTEP 201 (438)
T ss_dssp HHH--------HHHHHHHGCTTB----GGG----STTG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS---SSSSGGGGSB
T ss_pred HHH--------HHHHHhhcccCC----cch----hhccccccccHHHHHHhcCCCHHHHHHHHHhhhh--ccCccccccc
Confidence 222 332222221111 000 0112334688999999999988776544322221 22221 123
Q ss_pred hHHHH---H----hhhcCCCC-ceEeecchHHHHHHHHHhc---CCeEEeCCceEEEEEeC-CEE-EEEEccCceEecCE
Q 043512 235 GLAGA---V----SLAGSGGG-LWAVEGGNWQMAAGLINRS---DVALHLHEEIESISYLR-EYY-ELNSTKGNSYTCQI 301 (487)
Q Consensus 235 ~~~~~---~----~~~~~~~g-~~~~~gG~~~l~~~l~~~~---G~~i~~~~~V~~I~~~~-~~v-~V~~~~G~~~~ad~ 301 (487)
+..++ - ++..++.+ ..+|.-|.++|++++.+.+ |+.+.+|++|.+|..++ +++ +|.. +|+++.|+.
T Consensus 202 ~~~~l~ri~~yl~SlgryG~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~ 280 (438)
T PF00996_consen 202 AREGLERIKLYLSSLGRYGKSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKK 280 (438)
T ss_dssp SHHHHHHHHHHHHHHCCCSSSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESE
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCE
Confidence 33222 1 12223334 4489999999999998853 99999999999999854 454 6665 888999999
Q ss_pred EEEcc
Q 043512 302 TVVAT 306 (487)
Q Consensus 302 VV~a~ 306 (487)
||+..
T Consensus 281 vI~dp 285 (438)
T PF00996_consen 281 VIGDP 285 (438)
T ss_dssp EEEEG
T ss_pred EEECC
Confidence 99653
No 52
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.20 E-value=3.7e-10 Score=115.59 Aligned_cols=54 Identities=17% Similarity=0.381 Sum_probs=43.4
Q ss_pred HHHHHHHHH---h----cC--CeEEeCCceEEEEEe-CCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 257 WQMAAGLIN---R----SD--VALHLHEEIESISYL-REYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 257 ~~l~~~l~~---~----~G--~~i~~~~~V~~I~~~-~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
..+++++++ + .| ++|+++++|++|..+ ++.+.|+|.+| ++.||.||+|++.|..
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 456666643 4 56 679999999999987 44578889888 7999999999999874
No 53
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.20 E-value=2.4e-10 Score=114.58 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=44.2
Q ss_pred HHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC
Q 043512 258 QMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN 312 (487)
Q Consensus 258 ~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~ 312 (487)
.++.++++ +.|++++++++|++|..+++++.|++++| ++.+|.||+|++.+...
T Consensus 150 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~ 206 (376)
T PRK11259 150 LAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVKD 206 (376)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchhh
Confidence 44444433 46999999999999999888888988888 79999999999998643
No 54
>PRK06847 hypothetical protein; Provisional
Probab=99.17 E-value=4.6e-10 Score=112.52 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=41.7
Q ss_pred HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
+..|++|+++++|++|+.+++++.|.+.+|+++.+|.||.|.+.+..
T Consensus 118 ~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 118 RAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred HHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence 34589999999999999888888888889989999999999998764
No 55
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.17 E-value=6.1e-10 Score=113.26 Aligned_cols=41 Identities=32% Similarity=0.342 Sum_probs=36.4
Q ss_pred CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
...+..+||+|||||++|+++|..|++ .|++|+|+||++..
T Consensus 13 ~~~~~~~dV~IvGaG~aGl~~A~~L~~-----~G~~v~v~E~~~~~ 53 (415)
T PRK07364 13 STRSLTYDVAIVGGGIVGLTLAAALKD-----SGLRIALIEAQPAE 53 (415)
T ss_pred CCCccccCEEEECcCHHHHHHHHHHhc-----CCCEEEEEecCCcc
Confidence 345557899999999999999999999 99999999998753
No 56
>PRK07588 hypothetical protein; Provisional
Probab=99.17 E-value=5.5e-10 Score=112.63 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=40.2
Q ss_pred CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 268 DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 268 G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
|++|+++++|++|+.+++++.|++++|+++++|.||.|.+.+..
T Consensus 116 ~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 116 QVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred CeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 68999999999999888889999999988999999999998864
No 57
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.15 E-value=1.5e-09 Score=109.48 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=41.2
Q ss_pred HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
++.|++++++++|++|..+++++.|++.+|+++.+|.||.|.+.+.
T Consensus 124 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 124 HAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 3458999999999999988888888888888999999999999986
No 58
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.15 E-value=6.9e-10 Score=111.65 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=40.5
Q ss_pred hcC-CeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 266 RSD-VALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 266 ~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
+.| ++|+++++|++|..+++++.|++.+|+++.+|.||.|.+.+..
T Consensus 118 ~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 118 EYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred hCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH
Confidence 445 8999999999999888888898889989999999999998753
No 59
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.14 E-value=3.5e-10 Score=115.34 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=37.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
..+||+||||||+|+++|+.|++.. .|.+|+|+||.+.+|-.++
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~---~~~~V~vlEr~~~~a~~sS 48 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELD---PDWNIEVVERLDSPAIESS 48 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCC---CCCeEEEEEcCCCcchhcC
Confidence 4579999999999999999999943 4899999999667765444
No 60
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.13 E-value=9.5e-10 Score=112.12 Aligned_cols=44 Identities=32% Similarity=0.440 Sum_probs=39.7
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
....++|+|||||++||+||..|++ .|++|+||||++.+||...
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~-----~G~~v~vfE~~~~vGG~W~ 50 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR-----EGHTVVVFEREKQVGGLWV 50 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh-----cCCeEEEEecCCCCcceee
Confidence 3446899999999999999999999 9999999999999988654
No 61
>PRK07236 hypothetical protein; Provisional
Probab=99.13 E-value=2.2e-09 Score=107.92 Aligned_cols=44 Identities=16% Similarity=0.053 Sum_probs=39.5
Q ss_pred CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 268 DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 268 G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
+++|+++++|++|+.+++++.|++.+|++++||.||.|-+.+..
T Consensus 112 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 112 AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence 46799999999999888889899999999999999999998864
No 62
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.13 E-value=1.6e-09 Score=109.46 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=39.4
Q ss_pred CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 268 DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 268 G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
+++++++++|+++..+++++.|++.+|+++.||.||.|.+.+..
T Consensus 124 ~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 124 LVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred CcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence 58999999999999888888888888988999999999999864
No 63
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.12 E-value=6.7e-10 Score=114.04 Aligned_cols=65 Identities=14% Similarity=0.268 Sum_probs=47.6
Q ss_pred CceEeecc---hHHHHHHHHHh---cCCeEEeCCceEEEEEeC-CEEEEEE---ccC--ceEecCEEEEccCCCCCC
Q 043512 248 GLWAVEGG---NWQMAAGLINR---SDVALHLHEEIESISYLR-EYYELNS---TKG--NSYTCQITVVATPLDELN 312 (487)
Q Consensus 248 g~~~~~gG---~~~l~~~l~~~---~G~~i~~~~~V~~I~~~~-~~v~V~~---~~G--~~~~ad~VV~a~~~~~~~ 312 (487)
+.|.+.+| ...+..+|++. .|++|+++++|++|..++ +++.|++ .+| .+++||+||+|++.+...
T Consensus 166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~ 242 (483)
T TIGR01320 166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALP 242 (483)
T ss_pred EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHH
Confidence 45556555 36677777654 499999999999999865 4566543 334 368999999999998754
No 64
>PRK08013 oxidoreductase; Provisional
Probab=99.11 E-value=1.9e-09 Score=108.99 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=40.0
Q ss_pred CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 268 DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 268 G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
|++++++++|++|+.+++.+.|++.+|++++||.||-|-+.+..
T Consensus 126 ~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 126 DITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSW 169 (400)
T ss_pred CcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence 78999999999999888888888889999999999999998864
No 65
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.10 E-value=1.3e-09 Score=111.96 Aligned_cols=45 Identities=29% Similarity=0.381 Sum_probs=37.6
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
...+||+||||||.|+++|++|++.. .|.+|+|+||.+.+|+..+
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~---~g~~V~VlEk~~~~a~~sS 47 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELE---PEWSITMFERLDGVALESS 47 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhC---CCCeEEEEEcCCchhhhcC
Confidence 34579999999999999999999843 4789999999877765544
No 66
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.10 E-value=9.2e-10 Score=109.92 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=32.0
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
+||+|||||++|+++|++|++ +|++|+|+|++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~-----~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAAR-----RGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCCeEEEEeCCCC
Confidence 589999999999999999999 9999999999764
No 67
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.10 E-value=1.5e-09 Score=110.03 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=40.9
Q ss_pred HHHHHHHH---hcCCeEEeCCceEEEEEe-CCEE-EEEEccCceEecCEEEEccCCCCC
Q 043512 258 QMAAGLIN---RSDVALHLHEEIESISYL-REYY-ELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 258 ~l~~~l~~---~~G~~i~~~~~V~~I~~~-~~~v-~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
.+..+|++ +.|++++.+++|++|..+ ++++ .|+|.+| ++.++.||+|++.+..
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSS 241 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhH
Confidence 44444433 469999999999999864 4554 6888888 7999999999998864
No 68
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.09 E-value=3.4e-09 Score=106.52 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=39.8
Q ss_pred CCeEEeCCceEEEEEeCCEEEEEEc-cCceEecCEEEEccCCCCC
Q 043512 268 DVALHLHEEIESISYLREYYELNST-KGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 268 G~~i~~~~~V~~I~~~~~~v~V~~~-~G~~~~ad~VV~a~~~~~~ 311 (487)
+++++.+++|+.++.+++.+.|++. +|++++||.||-|-+.+..
T Consensus 119 ~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~ 163 (387)
T COG0654 119 NVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSA 163 (387)
T ss_pred CcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchH
Confidence 4899999999999999988888877 9999999999999998864
No 69
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.09 E-value=1e-09 Score=111.26 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=41.4
Q ss_pred hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 266 RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 266 ~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
+.|++|+.+++|++|+.+++++.|++.+|++++||.||.|.+.+..
T Consensus 124 ~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 124 DSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred cCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 4589999999999999888888888889988999999999999864
No 70
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.09 E-value=3.4e-09 Score=107.29 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=41.5
Q ss_pred HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
++.|++|+++++|++|..+++++.|++.+|+++.+|.||.|.+.+..
T Consensus 122 ~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 122 EALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK 168 (403)
T ss_pred HhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence 34589999999999999888888888888889999999999998753
No 71
>PRK09126 hypothetical protein; Provisional
Probab=99.09 E-value=1.2e-09 Score=110.24 Aligned_cols=51 Identities=10% Similarity=0.120 Sum_probs=43.0
Q ss_pred HHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 261 AGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 261 ~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
+.+.+..|++|+++++|++++.+++.+.|++++|++++||.||.|.+.+..
T Consensus 118 ~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 118 EAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred HHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 344445689999999999999888888888888989999999999998753
No 72
>PRK06753 hypothetical protein; Provisional
Probab=99.09 E-value=2.2e-09 Score=107.59 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=39.2
Q ss_pred CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 268 DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 268 G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
+.+|+++++|++|+.+++++.|++.+|+++.+|.||.|.+.+..
T Consensus 110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 110 EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 45799999999999888889999999989999999999998753
No 73
>PRK05868 hypothetical protein; Validated
Probab=99.08 E-value=3.3e-09 Score=105.93 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=40.7
Q ss_pred cCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 267 SDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 267 ~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
.|++++++++|++|+.+++++.|++.+|++++||.||-|-+.+..
T Consensus 117 ~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 117 PSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred CCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence 478999999999998888889999999999999999999998864
No 74
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.07 E-value=3.2e-09 Score=106.95 Aligned_cols=42 Identities=31% Similarity=0.407 Sum_probs=38.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
+++||+|||||+||++||+.|++ .|++|+|+||++.+|.+..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~-----~G~~VlvlEk~~~~G~k~~ 43 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAK-----AGLDVLVLEKGSEPGAKPC 43 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHH-----cCCeEEEEecCCCCCCCcc
Confidence 57899999999999999999999 9999999999999886554
No 75
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.07 E-value=2.3e-09 Score=109.05 Aligned_cols=54 Identities=6% Similarity=-0.003 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
.+.....+++.|++|+.+++|++|..+++++.+.+.+|+++.||.||.|.+.+.
T Consensus 111 D~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 111 DAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 333333455679999999999999887777643344666899999999998864
No 76
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.07 E-value=4.1e-09 Score=105.92 Aligned_cols=44 Identities=11% Similarity=0.249 Sum_probs=40.0
Q ss_pred cCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 267 SDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 267 ~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
.|++++++++|++|..+++++.|++.+|+++.||.||.|.+.+.
T Consensus 119 ~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 119 TNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred CCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 48999999999999988888888888888899999999999885
No 77
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.06 E-value=2.9e-09 Score=100.13 Aligned_cols=42 Identities=33% Similarity=0.499 Sum_probs=38.1
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM 65 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~ 65 (487)
...+||+|||||++|++||+.|++ +|++|+|+|++..+||.+
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~-----~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAK-----AGLKVAVFERKLSFGGGM 64 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHh-----CCCeEEEEecCCCCCCcc
Confidence 346899999999999999999999 999999999998888743
No 78
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.06 E-value=4.7e-10 Score=102.16 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 259 MAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 259 l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
..+.++++.+.+++++++|++|.++++++.|++.+++++.||.||+|++...
T Consensus 87 yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 87 YLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYS 138 (203)
T ss_dssp HHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSC
T ss_pred HHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccC
Confidence 4455666778889999999999999988999999998899999999999643
No 79
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.04 E-value=2.7e-09 Score=111.62 Aligned_cols=56 Identities=9% Similarity=0.104 Sum_probs=42.2
Q ss_pred HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEc---cC--ceEecCEEEEccCCCCCC
Q 043512 257 WQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNST---KG--NSYTCQITVVATPLDELN 312 (487)
Q Consensus 257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~---~G--~~~~ad~VV~a~~~~~~~ 312 (487)
..++.++++ +.|++|+.+++|++|..+++++ +|++. +| ..+.||.||.|+++|...
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~ 213 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQH 213 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHH
Confidence 345555544 4699999999999999887765 56542 23 379999999999999744
No 80
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.04 E-value=6.2e-09 Score=104.89 Aligned_cols=45 Identities=9% Similarity=0.055 Sum_probs=38.9
Q ss_pred hcC-CeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 266 RSD-VALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 266 ~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
+.| ++++ +++|++|..+++++.|++.+|.++.||.||.|.+.+..
T Consensus 123 ~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 123 FQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSW 168 (388)
T ss_pred hCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCch
Confidence 445 8888 99999998888888898888888999999999999753
No 81
>PRK06184 hypothetical protein; Provisional
Probab=99.04 E-value=3.4e-09 Score=110.31 Aligned_cols=48 Identities=6% Similarity=-0.055 Sum_probs=39.9
Q ss_pred HHhcCCeEEeCCceEEEEEeCCEEEEEE---ccCceEecCEEEEccCCCCC
Q 043512 264 INRSDVALHLHEEIESISYLREYYELNS---TKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~---~~G~~~~ad~VV~a~~~~~~ 311 (487)
+++.|++|+++++|++|+.+++++.|++ .++++++||.||.|.+.+..
T Consensus 119 l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 119 LAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence 3445899999999999998888877665 55678999999999999863
No 82
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.04 E-value=4.8e-09 Score=101.28 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=38.8
Q ss_pred HHHhcCCeEEeCCceEEEEEeCCEEEEEEc-cCceEecCEEEEccCCCC
Q 043512 263 LINRSDVALHLHEEIESISYLREYYELNST-KGNSYTCQITVVATPLDE 310 (487)
Q Consensus 263 l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~-~G~~~~ad~VV~a~~~~~ 310 (487)
.+++.|++++++++|+++..+++++.+... ++.+++||.||.|.+...
T Consensus 100 ~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 100 RAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 344679999999999999988887766544 345899999999999874
No 83
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.02 E-value=1.1e-08 Score=103.15 Aligned_cols=44 Identities=14% Similarity=0.250 Sum_probs=40.0
Q ss_pred CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 268 DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 268 G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
|++++.+++|+++..+++++.|++.+|++++||.||.|.+.+..
T Consensus 127 gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 127 NVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred CcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence 89999999999999888888888888889999999999999864
No 84
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.02 E-value=7.9e-09 Score=96.85 Aligned_cols=41 Identities=29% Similarity=0.462 Sum_probs=37.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM 65 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~ 65 (487)
..+||+|||||++||+||+.|++ .|.+|+|+||+..+||.+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-----~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-----NGLKVCVLERSLAFGGGS 60 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-----CCCcEEEEecCCCCCccc
Confidence 46899999999999999999999 999999999999888653
No 85
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.02 E-value=5.2e-09 Score=105.77 Aligned_cols=45 Identities=7% Similarity=0.058 Sum_probs=37.2
Q ss_pred cCCeEEeCCceEEEEEeCCEEEEEE---ccCceEecCEEEEccCCCCC
Q 043512 267 SDVALHLHEEIESISYLREYYELNS---TKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 267 ~G~~i~~~~~V~~I~~~~~~v~V~~---~~G~~~~ad~VV~a~~~~~~ 311 (487)
.|++|+++++|+++..+++++.|++ .+++++.+|.||-|-+.+..
T Consensus 121 ~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~ 168 (400)
T PRK06475 121 PGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSM 168 (400)
T ss_pred CCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHh
Confidence 4789999999999998878777665 33457999999999999864
No 86
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.01 E-value=5.4e-09 Score=105.54 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=40.7
Q ss_pred hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 266 RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 266 ~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
..|++++++++|++|..+++++.|++.+|..+.+|.||.|.+.+..
T Consensus 125 ~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 125 APGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA 170 (395)
T ss_pred CCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence 3478999999999999888888898888888999999999998853
No 87
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.01 E-value=6.8e-09 Score=104.59 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=38.6
Q ss_pred hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 266 RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 266 ~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
+.++..+++++|+++..+++++.|++.+|++++||.||.|.+.+..
T Consensus 123 ~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 123 ELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSP 168 (388)
T ss_pred cCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCch
Confidence 3443348899999999888889898888989999999999998753
No 88
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.01 E-value=4.5e-09 Score=109.06 Aligned_cols=56 Identities=7% Similarity=-0.027 Sum_probs=42.8
Q ss_pred HHHHHHHH---HhcCCeEEeCCceEEEEEeCCEEEEEEcc---Cc--eEecCEEEEccCCCCCC
Q 043512 257 WQMAAGLI---NRSDVALHLHEEIESISYLREYYELNSTK---GN--SYTCQITVVATPLDELN 312 (487)
Q Consensus 257 ~~l~~~l~---~~~G~~i~~~~~V~~I~~~~~~v~V~~~~---G~--~~~ad~VV~a~~~~~~~ 312 (487)
.+++..++ ++.|++++.+++|++|..+++.++|++.+ |+ ++.|+.||.|+++|...
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~ 218 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQ 218 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHH
Confidence 34444443 34699999999999999887777776653 43 68999999999998743
No 89
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.00 E-value=5.6e-09 Score=106.06 Aligned_cols=54 Identities=15% Similarity=0.235 Sum_probs=44.3
Q ss_pred HHHHHHHHhc-CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 258 QMAAGLINRS-DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 258 ~l~~~l~~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
.+.+.|.+.+ +..++++++|++|..+++++.|++.+|+++++|.||.|.+.+..
T Consensus 106 ~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 106 DFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred HHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 4455555554 45789999999999888889998889989999999999998864
No 90
>PLN02463 lycopene beta cyclase
Probab=99.00 E-value=1e-07 Score=96.74 Aligned_cols=44 Identities=11% Similarity=0.168 Sum_probs=38.3
Q ss_pred hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 266 RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 266 ~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
+.|++++ .++|++|..+++++.|++++|++++||.||.|.+...
T Consensus 126 ~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 126 ANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred hcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence 3588885 6799999988888899999998999999999999864
No 91
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.00 E-value=1.9e-08 Score=101.95 Aligned_cols=45 Identities=20% Similarity=0.187 Sum_probs=40.4
Q ss_pred cCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 267 SDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 267 ~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
.|++|+++++|++|..+++.+.|++.+|++++||.||.|.+.+..
T Consensus 125 ~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 125 DNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred CCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 478999999999999888888899989999999999999998753
No 92
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.99 E-value=9.6e-09 Score=106.00 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=36.3
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC--ccce
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV--VGGR 64 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~--~GGr 64 (487)
+...||+|||||++|++||+.+++ .|.+|+|+||.+. .||.
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~-----~G~~V~vlEk~~~~~~GG~ 44 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAARE-----AGASVLLLEAAPREWRGGN 44 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHH-----CCCeEEEEeCCCCcCCCcc
Confidence 456899999999999999999999 9999999999874 5653
No 93
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.99 E-value=1.2e-08 Score=102.90 Aligned_cols=61 Identities=25% Similarity=0.342 Sum_probs=45.4
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc--cceeEEEeeCCeEecccceeEecCChhHHHHHHHcCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV--GGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNL 98 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~--GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl 98 (487)
..||+|||||++||++|..|++ .|++|+|+|+++.. .+ +.++..+.+ ...++++++|+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~-----~G~~v~v~E~~~~~~~~~------------~~~a~~l~~---~~~~~l~~lGl 61 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL-----AGIDSVVLERRSREYVEG------------RIRAGVLEQ---GTVDLLREAGV 61 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh-----cCCCEEEEEcCCcccccc------------ccceeEECH---hHHHHHHHcCC
Confidence 5799999999999999999999 99999999998742 11 123333322 22378889997
Q ss_pred CCC
Q 043512 99 KPK 101 (487)
Q Consensus 99 ~~~ 101 (487)
...
T Consensus 62 ~~~ 64 (392)
T PRK08243 62 GER 64 (392)
T ss_pred hHH
Confidence 543
No 94
>PRK06834 hypothetical protein; Provisional
Probab=98.99 E-value=7e-09 Score=107.02 Aligned_cols=48 Identities=13% Similarity=0.100 Sum_probs=42.4
Q ss_pred HHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 264 INRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
+++.|++|+++++|++|..+++++.|++.+|++++||.||.|.+.+..
T Consensus 110 l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 110 VGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred HHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 445689999999999999988888888888888999999999999864
No 95
>PRK07190 hypothetical protein; Provisional
Probab=98.98 E-value=5e-09 Score=108.03 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=41.5
Q ss_pred HHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 264 INRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
+++.|++|+.+++|++|..+++++.+.+.+|++++|+.||.|.+.+.
T Consensus 119 ~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 119 LKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred HHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 34569999999999999998888877777888999999999999875
No 96
>PRK07045 putative monooxygenase; Reviewed
Probab=98.98 E-value=8.6e-09 Score=103.80 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=38.9
Q ss_pred hcCCeEEeCCceEEEEEeCCE--EEEEEccCceEecCEEEEccCCCCC
Q 043512 266 RSDVALHLHEEIESISYLREY--YELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 266 ~~G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
..|++++++++|+.|+.++++ +.|++.+|+++.+|.||.|.+....
T Consensus 119 ~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 119 LPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred CCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 347899999999999986554 3788888989999999999998863
No 97
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.97 E-value=4.3e-08 Score=102.64 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=40.5
Q ss_pred CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
...+.++||||||+| +|++||..+++ .|.+|+|+||.+.+||.+.
T Consensus 11 ~~~d~e~DvvvvG~G-~G~~aA~~a~~-----~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 11 PVRDTTVDLLVVGSG-TGMAAALAAHE-----LGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred CCCCceeCEEEECCc-HHHHHHHHHHH-----CCCcEEEEecCCCCcCccc
Confidence 445668999999999 89999999999 9999999999999999665
No 98
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.96 E-value=1.9e-08 Score=101.04 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=41.3
Q ss_pred hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 266 RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 266 ~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
..|++++.+++|++++.+++++.|++.+|.++++|.||.|.+.+..
T Consensus 123 ~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 123 YPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred CCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence 3478999999999999988888899999999999999999999864
No 99
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.96 E-value=2.9e-09 Score=107.05 Aligned_cols=82 Identities=13% Similarity=0.186 Sum_probs=59.9
Q ss_pred CCCceEeecch---HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCCCCeeecCC
Q 043512 246 GGGLWAVEGGN---WQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDELNLHFSPP 318 (487)
Q Consensus 246 ~~g~~~~~gG~---~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~~~~~l~p~ 318 (487)
..++|.|..|. ..++.+|+. ++|+.|..+|+|++|....+++ +|.|.-| .+++.+||-|++.|.....-.+.
T Consensus 173 ~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~g 251 (856)
T KOG2844|consen 173 YGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGAMAG 251 (856)
T ss_pred eeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhhhcC
Confidence 35678887774 457777754 5799999999999999876664 8999888 79999999999999743322233
Q ss_pred CCCCCcCeEE
Q 043512 319 ISIPERKLQH 328 (487)
Q Consensus 319 ~~~~~~~~~~ 328 (487)
+..+..++++
T Consensus 252 vkvPL~p~~H 261 (856)
T KOG2844|consen 252 VKVPLVPMHH 261 (856)
T ss_pred Ccccceeeee
Confidence 3344444443
No 100
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.95 E-value=3e-08 Score=104.08 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=38.5
Q ss_pred cCCeEEeCCceEEEEEeCCEEEEEEc--cC--ceEecCEEEEccCCCCC
Q 043512 267 SDVALHLHEEIESISYLREYYELNST--KG--NSYTCQITVVATPLDEL 311 (487)
Q Consensus 267 ~G~~i~~~~~V~~I~~~~~~v~V~~~--~G--~~~~ad~VV~a~~~~~~ 311 (487)
.|++|+++++|++|+.+++++.|++. +| ++++||.||.|.+.+..
T Consensus 127 ~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 127 PHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred CCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence 48999999999999998888877765 46 47999999999998864
No 101
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.95 E-value=2.7e-08 Score=103.35 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=38.9
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM 65 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~ 65 (487)
...++||||||||++|++||+.+++ .|.+|+|+||.+.+||..
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~-----~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKD-----AGMNPVILEKMPVAGGNT 100 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHH-----CCCCEEEEECCCCCCCcc
Confidence 3457899999999999999999999 999999999999888854
No 102
>PRK08244 hypothetical protein; Provisional
Probab=98.94 E-value=8.5e-09 Score=107.16 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEc--cC-ceEecCEEEEccCCCCC
Q 043512 257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNST--KG-NSYTCQITVVATPLDEL 311 (487)
Q Consensus 257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~--~G-~~~~ad~VV~a~~~~~~ 311 (487)
.++....+++.|++|+++++|++|..+++++.|++. +| ++++||.||.|.+.+..
T Consensus 103 e~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 103 EKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred HHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 444444455679999999999999988888766543 45 47999999999998863
No 103
>PRK10015 oxidoreductase; Provisional
Probab=98.94 E-value=3e-08 Score=100.80 Aligned_cols=39 Identities=23% Similarity=0.402 Sum_probs=35.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
..+||||||||++|++||+.|++ +|++|+|+||...+|-
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~-----~G~~VlliEr~~~~g~ 42 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMAR-----AGLDVLVIERGDSAGC 42 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHh-----CCCeEEEEecCCCCCc
Confidence 45899999999999999999999 9999999999887653
No 104
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.94 E-value=9.5e-09 Score=103.45 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=46.2
Q ss_pred CceEeecch---HHHHHHHHH---hcC-CeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 248 GLWAVEGGN---WQMAAGLIN---RSD-VALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 248 g~~~~~gG~---~~l~~~l~~---~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
+.+.+.+|. ..++.++++ +.| ..+..+++|+.+..+++.+.|.|.+|+ +.||+||+|++.+..
T Consensus 144 a~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 144 GLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred eEecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 344555543 456666655 457 567779999999875345689998885 999999999999864
No 105
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.94 E-value=2.4e-08 Score=99.98 Aligned_cols=43 Identities=7% Similarity=0.187 Sum_probs=38.1
Q ss_pred CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 268 DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 268 G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
+++++.+++|++|..+++++.|.+.++ +++||.||.|-+.+..
T Consensus 119 ~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 119 LITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred CcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence 478999999999998888888888777 8999999999999864
No 106
>PRK07538 hypothetical protein; Provisional
Probab=98.93 E-value=2e-08 Score=101.97 Aligned_cols=35 Identities=37% Similarity=0.495 Sum_probs=32.5
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
+||+|||||++||++|+.|++ +|++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~-----~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQ-----RGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHh-----CCCcEEEEEcCCcc
Confidence 589999999999999999999 99999999998653
No 107
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.93 E-value=4.5e-09 Score=105.86 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=42.6
Q ss_pred hHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 256 NWQMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 256 ~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
...+.+.|.+ +.|++|+++++|++|..+++.+.|++ +++++.+|.||+|++...
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 3455555544 45999999999999988777778877 455899999999999753
No 108
>PRK07121 hypothetical protein; Validated
Probab=98.93 E-value=6.6e-08 Score=100.37 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=38.8
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
....||+|||||++|++||+.+++ .|.+|+|+||....||...
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae-----~G~~VillEK~~~~gG~s~ 60 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAA-----AGARVLVLERAAGAGGATA 60 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHH-----CCCeEEEEeCCCCCCCccc
Confidence 356899999999999999999999 9999999999988888543
No 109
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.92 E-value=3.2e-08 Score=99.58 Aligned_cols=63 Identities=22% Similarity=0.251 Sum_probs=45.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLK 99 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~ 99 (487)
+.+||+|||||++|+++|..|++ +|++|+|+||++... . .-+.|+..+.. +..++++.+|+.
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~-----~G~~v~viE~~~~~~------~----~~~~~a~~l~~---~~~~~L~~lGl~ 62 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHK-----AGIDNVILERQSRDY------V----LGRIRAGVLEQ---GTVDLLREAGVD 62 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHH-----CCCCEEEEECCCCcc------c----CCceeEeeECH---HHHHHHHHCCCh
Confidence 35799999999999999999999 999999999987410 0 00234444322 233788888875
Q ss_pred C
Q 043512 100 P 100 (487)
Q Consensus 100 ~ 100 (487)
.
T Consensus 63 ~ 63 (390)
T TIGR02360 63 E 63 (390)
T ss_pred H
Confidence 4
No 110
>PLN02661 Putative thiazole synthesis
Probab=98.91 E-value=3.8e-08 Score=94.91 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=37.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCC-CCeEEEEecCCCccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNW-HPRILMFERNGVVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~-G~~V~VlE~~~~~GGr~~ 66 (487)
...||+|||||++|++||+.|++ . |++|+|+||+..+||...
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~-----~~g~kV~viEk~~~~GGG~~ 133 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSK-----NPNVKVAIIEQSVSPGGGAW 133 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHH-----cCCCeEEEEecCccccccee
Confidence 35799999999999999999997 5 899999999988887443
No 111
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.88 E-value=3.8e-08 Score=102.22 Aligned_cols=56 Identities=5% Similarity=-0.059 Sum_probs=43.2
Q ss_pred HHHHHHHH---HhcCCeEEeCCceEEEEEeCCEEEEEEccC----ceEecCEEEEccCCCCCC
Q 043512 257 WQMAAGLI---NRSDVALHLHEEIESISYLREYYELNSTKG----NSYTCQITVVATPLDELN 312 (487)
Q Consensus 257 ~~l~~~l~---~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G----~~~~ad~VV~a~~~~~~~ 312 (487)
..+...++ ++.|++++.+++|++|..+++.+.|++.++ .++.|+.||.|+++|...
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~ 217 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTD 217 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHH
Confidence 34444443 356999999999999998887777776554 358999999999999754
No 112
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.86 E-value=3.2e-07 Score=96.91 Aligned_cols=43 Identities=35% Similarity=0.492 Sum_probs=39.5
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
....||+|||||++|++||+.+++ +|.+|+|+||.+..||.+.
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~-----~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARK-----LGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHH-----cCCeEEEEecCCCCCCccc
Confidence 357899999999999999999999 9999999999998888765
No 113
>PRK06185 hypothetical protein; Provisional
Probab=98.85 E-value=7e-08 Score=97.89 Aligned_cols=36 Identities=22% Similarity=0.450 Sum_probs=33.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
+.+||+|||||++|+++|+.|++ .|++|+|+|+++.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~-----~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLAR-----AGVDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-----CCCcEEEEecCCc
Confidence 56899999999999999999999 9999999999753
No 114
>PRK06996 hypothetical protein; Provisional
Probab=98.82 E-value=1.7e-07 Score=94.74 Aligned_cols=45 Identities=11% Similarity=-0.016 Sum_probs=37.8
Q ss_pred HHhcCCeEEeCCceEEEEEeCCEEEEEEccC---ceEecCEEEEccCC
Q 043512 264 INRSDVALHLHEEIESISYLREYYELNSTKG---NSYTCQITVVATPL 308 (487)
Q Consensus 264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VV~a~~~ 308 (487)
+++.|++++.+++|++|+.+++++.|+..+| ++++||.||.|.+.
T Consensus 125 ~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 125 VRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred HHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence 3445899999999999988888888887654 58999999999885
No 115
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.82 E-value=2.1e-06 Score=85.84 Aligned_cols=42 Identities=14% Similarity=0.126 Sum_probs=37.3
Q ss_pred CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCC
Q 043512 268 DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLD 309 (487)
Q Consensus 268 G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~ 309 (487)
++.+++++.|++|..+++.+.|++.+|++++|+.||-|.++.
T Consensus 100 ~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 100 GGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred CCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 457789999999999888888899999999999999999854
No 116
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.82 E-value=1.4e-07 Score=99.27 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=37.2
Q ss_pred CCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 15 QPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 15 ~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
|...+...||+|||||++||++|+.|++ .|++|+|+||++.+
T Consensus 17 ~~~~~~~~dVlIVGaGpaGl~lA~~L~~-----~G~~v~viE~~~~~ 58 (547)
T PRK08132 17 DADDPARHPVVVVGAGPVGLALAIDLAQ-----QGVPVVLLDDDDTL 58 (547)
T ss_pred cCCCCCcCCEEEECCCHHHHHHHHHHHh-----CCCcEEEEeCCCCC
Confidence 3445577899999999999999999999 99999999998754
No 117
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.82 E-value=2.9e-08 Score=100.84 Aligned_cols=47 Identities=30% Similarity=0.390 Sum_probs=41.2
Q ss_pred CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCe-EEEEecCCCccceeEEE
Q 043512 17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPR-ILMFERNGVVGGRMATV 68 (487)
Q Consensus 17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~-V~VlE~~~~~GGr~~s~ 68 (487)
...+..||+|||||++||++|+.|++ +|.. ++||||++.+||.-+..
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~-----~g~~~~~i~Ek~~~~Gg~W~~~ 51 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQ-----AGVPDFVIFEKRDDVGGTWRYN 51 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHH-----cCCCcEEEEEccCCcCCcchhc
Confidence 45567899999999999999999999 9988 99999999988865543
No 118
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.81 E-value=3.2e-08 Score=99.36 Aligned_cols=43 Identities=28% Similarity=0.415 Sum_probs=38.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
.+.++|+|||||++||++|..|.+ .|++|+||||.+.+||--.
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~-----~g~~v~vfEr~~~iGGlW~ 46 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLR-----EGHEVVVFERTDDIGGLWK 46 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHH-----CCCCceEEEecCCccceEe
Confidence 346899999999999999999999 9999999999999887544
No 119
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.81 E-value=8.9e-07 Score=93.56 Aligned_cols=46 Identities=30% Similarity=0.344 Sum_probs=41.4
Q ss_pred CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
......+||+|||+|++|++||..+++ +|.+|+|+||++.+||.+.
T Consensus 7 ~~~~~~~dvvvvG~G~aG~~aa~~~~~-----~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 7 YPPDLECDVLVIGSGAAGLSAAVTAAW-----HGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred CCCCCccCEEEECcCHHHHHHHHHHHH-----CCCeEEEEecCCCCCcccc
Confidence 446668999999999999999999999 9999999999988888664
No 120
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.80 E-value=4.7e-08 Score=94.66 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=38.6
Q ss_pred HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
++.|+++++ ++|++|..+++.+.|.+.+|+++.+|+||+|++...
T Consensus 68 ~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 68 VKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred HHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence 455788888 899999988888888888888999999999999854
No 121
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.79 E-value=1.7e-08 Score=100.14 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=36.8
Q ss_pred HHHhcCCeEEeCCceEEEEEeCCEEEEEEcc---C--ceEecCEEEEccCCCCC
Q 043512 263 LINRSDVALHLHEEIESISYLREYYELNSTK---G--NSYTCQITVVATPLDEL 311 (487)
Q Consensus 263 l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~---G--~~~~ad~VV~a~~~~~~ 311 (487)
.+++.|++|+++++|+.+..+.+++.+.+.+ | ++++||.||.|-+.+..
T Consensus 120 ~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 120 EAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp HHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred hhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence 3445689999999999999988887554433 3 36899999999999863
No 122
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.78 E-value=6.8e-08 Score=98.30 Aligned_cols=56 Identities=9% Similarity=0.079 Sum_probs=39.4
Q ss_pred hHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEc---cCc--eEecCEEEEccCCCCC
Q 043512 256 NWQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNST---KGN--SYTCQITVVATPLDEL 311 (487)
Q Consensus 256 ~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~---~G~--~~~ad~VV~a~~~~~~ 311 (487)
...+.+.|.+ +.|++|+++++|+++..++++| +|... +|+ ++.|+.||+|++-...
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 4556666654 5699999999999999998886 55544 453 5789999999997654
No 123
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.77 E-value=2.2e-07 Score=95.24 Aligned_cols=38 Identities=29% Similarity=0.519 Sum_probs=35.6
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCCCcccee
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNGVVGGRM 65 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~~~GGr~ 65 (487)
||+|||||++|++||+.+++ +| .+|+|+||.+..||.+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~-----~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKK-----AGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHH-----cCCccEEEEecCCCCCCcc
Confidence 79999999999999999999 99 9999999998888754
No 124
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.77 E-value=1.2e-07 Score=96.40 Aligned_cols=38 Identities=29% Similarity=0.318 Sum_probs=33.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
...||+|||+|.+||+||..+ + .|.+|+|+||.+..||
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a-~-----~G~~V~lleK~~~~gg 40 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNL-R-----KDLKILMVSKGKLNEC 40 (433)
T ss_pred ccccEEEECchHHHHHHHHHh-c-----cCCCEEEEecCCCCCC
Confidence 457999999999999999997 6 7899999999887655
No 125
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.76 E-value=2.8e-07 Score=97.76 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=36.0
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
...+||+|||||+.|+++|+.|++ +|++|+|+||++..+|
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~-----rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAAT-----RGLRVGLVEREDFSSG 108 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHh-----CCCEEEEEeccccCCC
Confidence 445899999999999999999999 9999999999975544
No 126
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.76 E-value=1.4e-07 Score=96.41 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=37.8
Q ss_pred CCeEEeCCceEEEEEe-------CCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 268 DVALHLHEEIESISYL-------REYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 268 G~~i~~~~~V~~I~~~-------~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
+++++++++|++|+.+ +++++|++.+|++++||.||.|-+.+..
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 4899999999999752 3568888899999999999999999864
No 127
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.75 E-value=2.3e-07 Score=98.71 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=35.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
...||+|||||++||+||..+++ .|.+|+|+||...+|+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae-----~G~~VilieK~~~~~~ 72 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGE-----LGYNVKVFCYQDSPRR 72 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHH-----cCCcEEEEecCCCCCc
Confidence 35799999999999999999999 9999999999776653
No 128
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.75 E-value=7e-08 Score=101.38 Aligned_cols=55 Identities=9% Similarity=0.035 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCC-eEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512 257 WQMAAGLINRSDV-ALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 257 ~~l~~~l~~~~G~-~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
..+.+.|++.++. .++++++|++|+.+++++.|++.+|+++.+|.||.|.+.+..
T Consensus 194 ~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~ 249 (668)
T PLN02927 194 MTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSK 249 (668)
T ss_pred HHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcH
Confidence 3455566666654 467899999999988999999999989999999999999864
No 129
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.74 E-value=6.2e-07 Score=93.40 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=39.2
Q ss_pred CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512 16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM 65 (487)
Q Consensus 16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~ 65 (487)
...+.+.||+||||| +||+||+.+++ .|.+|+|+||.+..||.+
T Consensus 2 ~~~d~~~DVvVVG~G-aGl~aA~~aa~-----~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 2 SAWDEEVDVLVAGSG-GGVAGAYTAAR-----EGLSVALVEATDKFGGTT 45 (513)
T ss_pred CCCCCccCEEEECch-HHHHHHHHHHH-----CCCcEEEEecCCCCCcce
Confidence 345668899999999 99999999999 999999999998878754
No 130
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.73 E-value=1.3e-07 Score=95.09 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=31.1
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN 58 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~ 58 (487)
+||+|||||++|++||+.|++ .|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~-----~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR-----AGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh-----CCCcEEEEECC
Confidence 599999999999999999999 99999999997
No 131
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.72 E-value=1.1e-07 Score=98.16 Aligned_cols=39 Identities=23% Similarity=0.412 Sum_probs=35.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC-CCccc
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN-GVVGG 63 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~-~~~GG 63 (487)
..+||||||||+||+.||+.+++ .|.+|+|+|++ +.+|+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR-----~G~kV~LiE~~~d~iG~ 42 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAAR-----MGAKTLLLTHNLDTIGQ 42 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHH-----cCCcEEEEecccccccc
Confidence 46899999999999999999999 99999999997 46765
No 132
>PLN02697 lycopene epsilon cyclase
Probab=98.72 E-value=1.9e-07 Score=96.30 Aligned_cols=45 Identities=18% Similarity=0.314 Sum_probs=36.7
Q ss_pred hcCCeEEeCCceEEEEEeCCEEE-EEEccCceEecCEEEEccCCCCC
Q 043512 266 RSDVALHLHEEIESISYLREYYE-LNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 266 ~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
+.|+++ ++++|++|..+++++. +.+.+|.++.|+.||.|.+.+..
T Consensus 204 ~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 204 ESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASG 249 (529)
T ss_pred hcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChh
Confidence 358887 7889999988777764 45677888999999999999873
No 133
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.71 E-value=6.4e-07 Score=94.58 Aligned_cols=52 Identities=33% Similarity=0.454 Sum_probs=43.8
Q ss_pred EEeC--CCCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 10 LIFS--PQPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 10 ~~~~--~~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
++++ .+...+.++||+|||+|.+|++||..+++ +|.+|+|+||.+.+||.+.
T Consensus 3 ~~~~~~~~~~~~~~~dvvvvG~G~aG~~aa~~~~~-----~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 3 PVVSELSPERWDAEFDVIVIGAGAAGMSAALFAAI-----AGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred cccccCCCCCCCCCCCEEEECcCHHHHHHHHHHHH-----CCCcEEEEecCCCCCCccc
Confidence 4454 23445567899999999999999999999 9999999999998888665
No 134
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.71 E-value=8.5e-09 Score=91.15 Aligned_cols=42 Identities=31% Similarity=0.412 Sum_probs=34.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
..+||+|||||++||+||++|++ .|++|+|+|++..+||.++
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~-----~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAK-----AGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHH-----HTS-EEEEESSSS-BTTTT
T ss_pred ccCCEEEECCChhHHHHHHHHHH-----CCCeEEEEecCCCCCcccc
Confidence 35799999999999999999999 9999999999999998654
No 135
>PRK11445 putative oxidoreductase; Provisional
Probab=98.69 E-value=2.4e-07 Score=91.88 Aligned_cols=45 Identities=16% Similarity=0.078 Sum_probs=37.8
Q ss_pred cCCeEEeCCceEEEEEeCCEEEEEE-ccCc--eEecCEEEEccCCCCC
Q 043512 267 SDVALHLHEEIESISYLREYYELNS-TKGN--SYTCQITVVATPLDEL 311 (487)
Q Consensus 267 ~G~~i~~~~~V~~I~~~~~~v~V~~-~~G~--~~~ad~VV~a~~~~~~ 311 (487)
.|+++++++.|++|..+++++.|++ .+|+ +++||.||.|.+....
T Consensus 111 ~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 111 ASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred cCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 5789999999999998888887775 5664 6899999999998753
No 136
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.69 E-value=5.2e-06 Score=77.76 Aligned_cols=40 Identities=30% Similarity=0.414 Sum_probs=34.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
...||+|||||..|+|+|++|.++.-+ .|.+|+|+|+.+.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd-~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARD-EGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhc-CCceEEEEeccCc
Confidence 368999999999999999999985432 6799999999875
No 137
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.69 E-value=2.3e-06 Score=85.29 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=33.3
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCC--CCeEEEEecCCCccc
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERNGVVGG 63 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~--G~~V~VlE~~~~~GG 63 (487)
||+|||||++|+++|+.|++ . |++|+|+|+.+.+||
T Consensus 1 DviIvGaG~AGl~lA~~L~~-----~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQR-----ARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHh-----cCCCCeEEEEeCCCCCCC
Confidence 79999999999999999998 6 999999999887665
No 138
>PLN02985 squalene monooxygenase
Probab=98.69 E-value=1e-06 Score=91.44 Aligned_cols=40 Identities=33% Similarity=0.428 Sum_probs=35.7
Q ss_pred CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
...+..+||+|||||++|+++|+.|++ +|++|+|+||...
T Consensus 38 ~~~~~~~DViIVGAG~aGlalA~aLa~-----~G~~V~vlEr~~~ 77 (514)
T PLN02985 38 ERKDGATDVIIVGAGVGGSALAYALAK-----DGRRVHVIERDLR 77 (514)
T ss_pred cCcCCCceEEEECCCHHHHHHHHHHHH-----cCCeEEEEECcCC
Confidence 345667899999999999999999999 9999999999753
No 139
>PRK06126 hypothetical protein; Provisional
Probab=98.69 E-value=9e-08 Score=100.80 Aligned_cols=45 Identities=9% Similarity=0.042 Sum_probs=36.6
Q ss_pred cCCeEEeCCceEEEEEeCCEEEEEE---ccCc--eEecCEEEEccCCCCC
Q 043512 267 SDVALHLHEEIESISYLREYYELNS---TKGN--SYTCQITVVATPLDEL 311 (487)
Q Consensus 267 ~G~~i~~~~~V~~I~~~~~~v~V~~---~~G~--~~~ad~VV~a~~~~~~ 311 (487)
.|++|+++++|++|..+++++.+++ .+|+ ++.+|.||.|.+.+..
T Consensus 140 ~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 140 PGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred CCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 4789999999999998888776554 2353 6899999999998863
No 140
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=4e-07 Score=95.79 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=35.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
...||+|||||++||+||..+++ .|.+|+|+||....||
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae-----~G~~V~lveK~~~~~g 42 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIAS-----AGFKVAVISKVFPTRS 42 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHH-----CCCcEEEEEccCCCCC
Confidence 45799999999999999999999 9999999999876555
No 141
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=6.1e-07 Score=94.95 Aligned_cols=45 Identities=9% Similarity=0.043 Sum_probs=37.9
Q ss_pred CCCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 14 PQPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 14 ~~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
++.......||+|||||++||+||..+++ .|.+|+|+||....||
T Consensus 5 ~~~~~~~~~DVvVIG~G~AGl~AAl~Aa~-----~G~~V~lveK~~~~~g 49 (598)
T PRK09078 5 AYKIIDHKYDVVVVGAGGAGLRATLGMAE-----AGLKTACITKVFPTRS 49 (598)
T ss_pred cccccccccCEEEECccHHHHHHHHHHHH-----cCCcEEEEEccCCCCc
Confidence 34444457899999999999999999999 9999999999865544
No 142
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.67 E-value=6.1e-07 Score=94.82 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=34.0
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR 64 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr 64 (487)
||+|||||++|++||..+++ .|.+|+|+||....||.
T Consensus 1 DVlVVG~G~AGl~AA~~aae-----~G~~V~lleK~~~~~g~ 37 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAK-----AGLNTAVISKVYPTRSH 37 (566)
T ss_pred CEEEECccHHHHHHHHHHHH-----CCCcEEEEeccCCCCCc
Confidence 79999999999999999999 99999999998766653
No 143
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.67 E-value=1e-06 Score=92.52 Aligned_cols=42 Identities=29% Similarity=0.370 Sum_probs=38.6
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM 65 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~ 65 (487)
+.++||+|||+|++|++||..+++ .|.+|+|+||....||.+
T Consensus 4 d~~~DvvIiG~G~aGl~aA~~~a~-----~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 4 DETYDVVVVGSGGGGMCAALAAAD-----SGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHH-----CCCcEEEEecCCCCCcee
Confidence 457899999999999999999999 999999999998888854
No 144
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.65 E-value=7.8e-07 Score=93.91 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=35.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
...||+|||||+|||+||..+++ .|.+|+|+||....||
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~-----~G~~V~lleK~~~~~g 44 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQ-----SGQSCALLSKVFPTRS 44 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHH-----cCCcEEEEEccCCCCC
Confidence 46799999999999999999999 9999999999876555
No 145
>PRK09897 hypothetical protein; Provisional
Probab=98.65 E-value=5.1e-07 Score=93.24 Aligned_cols=41 Identities=20% Similarity=0.093 Sum_probs=35.4
Q ss_pred CeEEeCCceEEEEEeCCEEEEEEcc-CceEecCEEEEccCCC
Q 043512 269 VALHLHEEIESISYLREYYELNSTK-GNSYTCQITVVATPLD 309 (487)
Q Consensus 269 ~~i~~~~~V~~I~~~~~~v~V~~~~-G~~~~ad~VV~a~~~~ 309 (487)
++++.+++|++|..+++++.|++.+ |..+.||.||+|++-.
T Consensus 124 V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 124 VAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHV 165 (534)
T ss_pred EEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCC
Confidence 6888899999999988888888755 4679999999999963
No 146
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.65 E-value=2.4e-07 Score=93.29 Aligned_cols=44 Identities=7% Similarity=0.015 Sum_probs=36.2
Q ss_pred hcCCeEEeCCceEEEEEe-CCEEEEEEccCceEecCEEEEccCCCC
Q 043512 266 RSDVALHLHEEIESISYL-REYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 266 ~~G~~i~~~~~V~~I~~~-~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
+.|++++ .++|+.+..+ ++.+.|++.+|++++||.||.|.+.+.
T Consensus 97 ~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 97 EGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred hcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 4478885 6789998877 556788888888899999999999875
No 147
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.65 E-value=1.1e-06 Score=92.04 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=37.6
Q ss_pred CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
......||+|||||++||+||..+++ .|.+|+|+||....||
T Consensus 12 ~~~~~~DVlVIG~G~AGl~AAi~aae-----~G~~VilleK~~~~~g 53 (541)
T PRK07804 12 GWRDAADVVVVGSGVAGLTAALAARR-----AGRRVLVVTKAALDDG 53 (541)
T ss_pred ccccccCEEEECccHHHHHHHHHHHH-----cCCeEEEEEccCCCCC
Confidence 34567899999999999999999999 9999999999887665
No 148
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.64 E-value=3e-07 Score=95.94 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=40.3
Q ss_pred HHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 264 INRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
+++.|++++++++|++|..+++.+.|.+.+|+.+.||.||+|++...
T Consensus 276 ~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 276 VKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred HHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 34568899999999999987777888888888899999999999854
No 149
>PRK12839 hypothetical protein; Provisional
Probab=98.63 E-value=1.2e-06 Score=92.21 Aligned_cols=44 Identities=30% Similarity=0.438 Sum_probs=40.1
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
.+...||+|||+|++|++||+.|++ .|.+|+|+||...+||.+.
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~-----~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAY-----GGAKVLVVEKASTCGGATA 48 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHH-----CCCcEEEEecCCCCCcccc
Confidence 4457899999999999999999999 9999999999988898764
No 150
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.62 E-value=1.3e-06 Score=92.78 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=36.9
Q ss_pred CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
......||+|||||++||+||..+++ .|.+|+|+||....||
T Consensus 25 ~~~~~~DVlVIG~G~AGl~AAi~Aa~-----~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 25 VIDHTYDAVVVGAGGAGLRAALGLVE-----LGYKTACISKLFPTRS 66 (617)
T ss_pred ccccccCEEEECccHHHHHHHHHHHH-----cCCcEEEEeccCCCCC
Confidence 33457899999999999999999999 9999999999876555
No 151
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.61 E-value=1.3e-06 Score=92.50 Aligned_cols=37 Identities=24% Similarity=0.609 Sum_probs=33.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCC--CCeEEEEecCCCc
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERNGVV 61 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~--G~~V~VlE~~~~~ 61 (487)
...||+|||||+|||+||..+++ . |.+|+|+||....
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae-----~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKE-----WAPDLKVLIVEKANIK 48 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHH-----hCCCCeEEEEECCCcC
Confidence 45799999999999999999999 8 9999999998753
No 152
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.61 E-value=1.3e-06 Score=91.83 Aligned_cols=40 Identities=23% Similarity=0.212 Sum_probs=34.4
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC-ccce
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV-VGGR 64 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~-~GGr 64 (487)
....||+|||||++||+||..+ + .|.+|+|+||... .||+
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~-----~G~~VilleK~~~~~gG~ 45 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-E-----RGKNVVIVSKGLFGKSGC 45 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-h-----cCCCEEEEEccCCCCCcc
Confidence 3467999999999999999999 8 9999999999764 3444
No 153
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.61 E-value=6.1e-07 Score=93.52 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=39.0
Q ss_pred hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 266 RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 266 ~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
..|++++++++|++|..+++.+.|.+.+|+.+.+|.||+|++...
T Consensus 279 ~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 279 QYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred HhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 457899999999999887777788888888899999999999864
No 154
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.60 E-value=1.3e-06 Score=93.02 Aligned_cols=39 Identities=21% Similarity=0.165 Sum_probs=35.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
...||+|||||+|||+||..+++ .|.+|+|+||....||
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae-----~G~~V~lieK~~~~~g 45 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARE-----RGLRVAVVCKSLFGKA 45 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHH-----CCCCEEEEeccCCCCC
Confidence 46799999999999999999999 9999999999875444
No 155
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.60 E-value=7.2e-07 Score=94.17 Aligned_cols=54 Identities=13% Similarity=0.022 Sum_probs=40.0
Q ss_pred HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEE---EccCc--eEecCEEEEccCCCC
Q 043512 257 WQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELN---STKGN--SYTCQITVVATPLDE 310 (487)
Q Consensus 257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~---~~~G~--~~~ad~VV~a~~~~~ 310 (487)
..+.+.|.+ +.|++|+.++.|+++..+++++ +|. +.+|+ .+.|+.||+|++-..
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 455555644 3589999999999998877764 443 34553 589999999999864
No 156
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.60 E-value=1.1e-06 Score=93.21 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=35.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
...||+|||||++||+||..+++ .|.+|+|+||....||
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae-----~G~~VilveK~~~~~g 87 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSE-----HGFNTACITKLFPTRS 87 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHh-----cCCcEEEEEcCCCCCC
Confidence 45799999999999999999999 9999999999876555
No 157
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.59 E-value=8e-07 Score=90.77 Aligned_cols=60 Identities=18% Similarity=0.100 Sum_probs=44.1
Q ss_pred EeecchHHHHHHHHH---hcCCeEEeCCceEEEEEe--CCEE-EEEEc-cCceEecCEEEEccCCCC
Q 043512 251 AVEGGNWQMAAGLIN---RSDVALHLHEEIESISYL--REYY-ELNST-KGNSYTCQITVVATPLDE 310 (487)
Q Consensus 251 ~~~gG~~~l~~~l~~---~~G~~i~~~~~V~~I~~~--~~~v-~V~~~-~G~~~~ad~VV~a~~~~~ 310 (487)
++.++...+.+.|.+ +.|++|+++++|++|..+ ++.+ +|.+. ++.++.|+.||+|++-..
T Consensus 117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLG 183 (432)
T ss_pred eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence 444556667777744 569999999999999876 4444 55543 335799999999999654
No 158
>PRK08275 putative oxidoreductase; Provisional
Probab=98.59 E-value=7.5e-07 Score=93.68 Aligned_cols=42 Identities=26% Similarity=0.387 Sum_probs=35.9
Q ss_pred CCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCC--CCeEEEEecCCCc
Q 043512 15 QPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERNGVV 61 (487)
Q Consensus 15 ~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~--G~~V~VlE~~~~~ 61 (487)
|.......||+|||||+|||+||..+++ . |.+|+|+||....
T Consensus 3 ~~~~~~~~DVlVIG~G~AGl~AAi~aa~-----~g~g~~VilveK~~~~ 46 (554)
T PRK08275 3 MNTQEVETDILVIGGGTAGPMAAIKAKE-----RNPALRVLLLEKANVK 46 (554)
T ss_pred CCceeEecCEEEECcCHHHHHHHHHHHH-----hCCCCeEEEEeCCCCC
Confidence 4444567899999999999999999998 5 7899999998753
No 159
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.58 E-value=3.2e-07 Score=92.99 Aligned_cols=42 Identities=24% Similarity=0.409 Sum_probs=38.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
+..||+||||||.|+.+|+.++. +|++|+++|++|...|..+
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~-----RGl~v~LvE~~D~AsGTSs 52 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG-----RGLKVALVEKGDLASGTSS 52 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh-----CCCeEEEEecCcccCcccC
Confidence 78999999999999999999999 9999999999997666544
No 160
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.57 E-value=1.9e-06 Score=74.72 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=34.7
Q ss_pred CCeE-EeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCC
Q 043512 268 DVAL-HLHEEIESISYLREYYELNSTKGNSYTCQITVVATPL 308 (487)
Q Consensus 268 G~~i-~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~ 308 (487)
|++| +.+.+|+.|...++++.|.+.+|..+.||+||+|++-
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 4333 3578999999999999899999999999999999874
No 161
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.57 E-value=3.1e-06 Score=89.48 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=35.7
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
....||+|||||++||+||..+++ .|.+|+|+||....||
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~-----~G~~V~vleK~~~~~g 49 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLAR-----AGLSVAVLSKVFPTRS 49 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHH-----CCCcEEEEeccCCCCC
Confidence 346899999999999999999999 9999999999876555
No 162
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.56 E-value=1.8e-06 Score=91.20 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=34.6
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCC---CeEEEEecCCCccc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH---PRILMFERNGVVGG 63 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G---~~V~VlE~~~~~GG 63 (487)
..||+|||||++||+||..+++ .| .+|+|+||....||
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~-----~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAE-----RSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHH-----hCCCCCcEEEEEcccCCCC
Confidence 5799999999999999999999 88 89999999876555
No 163
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.56 E-value=1.1e-06 Score=93.75 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=34.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
...||+|||||++||+||..+++ +|.+|+|+||....+|
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae-----~G~~VivleK~~~~~s 42 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQ-----RGLDTIVLSLVPAKRS 42 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHH-----cCCCEEEEeCCCCCCc
Confidence 35799999999999999999999 9999999999876444
No 164
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.55 E-value=9.2e-07 Score=94.14 Aligned_cols=37 Identities=30% Similarity=0.366 Sum_probs=33.7
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCC-CCeEEEEecCCC
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNW-HPRILMFERNGV 60 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~-G~~V~VlE~~~~ 60 (487)
+...||+|||||++||++|..|++ . |.+|+|+|+.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar-----~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSA-----FPDITTRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhc-----CCCCcEEEEEcCCC
Confidence 457899999999999999999999 7 999999999753
No 165
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.54 E-value=2e-06 Score=91.00 Aligned_cols=38 Identities=18% Similarity=0.137 Sum_probs=33.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
...||+|||||++||+||+.+++ . .+|+|+||....||
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~-----~-~~VilleK~~~~~g 41 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGP-----R-ARTAVLTKLYPTRS 41 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHh-----C-CCEEEEeCCCCCCC
Confidence 35799999999999999999998 7 89999999865444
No 166
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.54 E-value=6.5e-07 Score=87.84 Aligned_cols=49 Identities=10% Similarity=0.117 Sum_probs=37.8
Q ss_pred HHHHHHh-cCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCC
Q 043512 260 AAGLINR-SDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLD 309 (487)
Q Consensus 260 ~~~l~~~-~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~ 309 (487)
+...++. -+.+|. .++|++|..+++++ +|.+.+|+.+.+|.||+|++..
T Consensus 101 ~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 101 MREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGTF 151 (392)
T ss_dssp HHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred HHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEecccc
Confidence 3334444 356774 78999999999887 9999999999999999999993
No 167
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.54 E-value=4e-06 Score=86.91 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=34.1
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR 64 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr 64 (487)
..||+|||||++||+||..+++ .|. |+|+||.+..||.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~-----~G~-V~lleK~~~~~g~ 39 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALAD-----QGR-VIVLSKAPVTEGN 39 (488)
T ss_pred CccEEEECccHHHHHHHHHHHh-----CCC-EEEEEccCCCCCc
Confidence 4699999999999999999999 997 9999999766663
No 168
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.54 E-value=2.2e-06 Score=84.37 Aligned_cols=43 Identities=30% Similarity=0.370 Sum_probs=38.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM 65 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~ 65 (487)
..+||++|||||.|.+.++.|+++. ...+|+|+||.+.++.-.
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~---p~~~I~i~Erl~~~A~ES 44 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELE---PDWSIAIFERLDSVALES 44 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhC---CCCeEEEEEecCcchhhc
Confidence 4689999999999999999999977 789999999998876543
No 169
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.54 E-value=2.6e-06 Score=87.68 Aligned_cols=52 Identities=15% Similarity=-0.026 Sum_probs=38.6
Q ss_pred HHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCCC
Q 043512 258 QMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDEL 311 (487)
Q Consensus 258 ~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~~ 311 (487)
.+.+.|.+ +.|++++.+ .|+.+..+++++ +|.+ +|+.+.++.||+|++-+..
T Consensus 121 ~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 121 HIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSG 176 (466)
T ss_pred HHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence 45555543 458999876 789988776665 5655 5668999999999998754
No 170
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.53 E-value=2.2e-06 Score=89.81 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=35.3
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR 64 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr 64 (487)
.....||+|||||+|||+||..+ . +|.+|+|+||.+..||.
T Consensus 6 ~~~e~DVlVVG~G~AGl~AAi~A-~-----~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 6 LPSQFDVLVVGSGAAGLYAALCL-P-----SHLRVGLITKDTLKTSA 46 (553)
T ss_pred ccccCCEEEECccHHHHHHHHHh-h-----cCCCEEEEEccCCCCCc
Confidence 34568999999999999999998 5 68999999999876663
No 171
>PTZ00367 squalene epoxidase; Provisional
Probab=98.53 E-value=2.2e-06 Score=89.49 Aligned_cols=35 Identities=34% Similarity=0.500 Sum_probs=32.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
..+||+|||||++|+++|..|++ +|++|+|+||+.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar-----~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSK-----QGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHh-----cCCEEEEEcccc
Confidence 46899999999999999999999 999999999974
No 172
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=9.9e-07 Score=84.41 Aligned_cols=252 Identities=16% Similarity=0.145 Sum_probs=129.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeC---------------------CeEeccc
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS---------------------GQTFEAG 78 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~---------------------g~~~d~G 78 (487)
+.+||+|+|-|+.=...+..|+. .|.+|+.+||++.-||-.+|.+.. .+.+|+-
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~-----~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLi 77 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSV-----DGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLI 77 (440)
T ss_pred CceeEEEEcCCchhheeeeeeee-----cCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhc
Confidence 34999999999999999999999 999999999999999998886531 1224444
Q ss_pred ceeEecCChhHHHHHHHcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHh
Q 043512 79 ASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRME 158 (487)
Q Consensus 79 ~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (487)
|.++..... +..++-+.++..-...-.. ...+.+..|........ ....+...+..++.+ .+..
T Consensus 78 PK~lmAn~~-Lvk~Li~T~V~~YL~fk~i-~gsfv~~~~k~~KVP~t---~~Ea~~s~lmgl~eK-----------rr~~ 141 (440)
T KOG1439|consen 78 PKFLMANGE-LVKILIHTGVTRYLEFKSI-SGSFVYKKGKIYKVPAT---EAEALTSPLMGLFEK-----------RRVM 141 (440)
T ss_pred hHhhhccch-HHHHHHHhchhhheEEEee-cceEEEECCeEEECCCC---HHHHhcCCccchhHH-----------HHHH
Confidence 444433332 2233344444332211100 11233444432332110 000122222222221 1222
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCcch---
Q 043512 159 SFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISG--- 235 (487)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--- 235 (487)
+|+.... .|..-.. .+. .-+...+.++.+++.+.++....++..-.+.........++.++
T Consensus 142 kFl~~V~-n~~e~~~--------~~~-------~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~ 205 (440)
T KOG1439|consen 142 KFLKFVL-NYDEEDP--------KTW-------QGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKET 205 (440)
T ss_pred HHHHHHh-hhhhhcc--------ccc-------cccccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHH
Confidence 3322211 1110000 000 01122234666666666554433221111111111111123333
Q ss_pred HHHHHh----hhcCCCC-ceEeecchHHHHHHHHHhc---CCeEEeCCceEEEEE-eCCEE-EEEEccCceEecCEEEEc
Q 043512 236 LAGAVS----LAGSGGG-LWAVEGGNWQMAAGLINRS---DVALHLHEEIESISY-LREYY-ELNSTKGNSYTCQITVVA 305 (487)
Q Consensus 236 ~~~~~~----~~~~~~g-~~~~~gG~~~l~~~l~~~~---G~~i~~~~~V~~I~~-~~~~v-~V~~~~G~~~~ad~VV~a 305 (487)
+..+.- +..++.. ..+|..|.+.+++..++.. |+++.+|.++.+|.. +++++ +|+. +++...+..||+-
T Consensus 206 ~~ri~~Y~~S~~~yg~~~ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~-~~~v~~~k~vi~d 284 (440)
T KOG1439|consen 206 LERILLYVRSFARYGKSPYLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKS-GGEVAKCKKVICD 284 (440)
T ss_pred HHHHHHHHHHHhhcCCCcceecccCcchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEec-CCceeecceEEec
Confidence 222222 2222223 3489999999999999853 999999999999998 44444 5554 4457788887776
Q ss_pred cCCC
Q 043512 306 TPLD 309 (487)
Q Consensus 306 ~~~~ 309 (487)
....
T Consensus 285 pSY~ 288 (440)
T KOG1439|consen 285 PSYF 288 (440)
T ss_pred Cccc
Confidence 5543
No 173
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.49 E-value=1.2e-06 Score=81.64 Aligned_cols=52 Identities=25% Similarity=0.461 Sum_probs=40.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC--ccceeEEEeeCCeEecccceeEec
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV--VGGRMATVTISGQTFEAGASILHP 84 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~--~GGr~~s~~~~g~~~d~G~~~~~~ 84 (487)
...||||||||++||.||..|+. +|++|+|+|+... +||.+. +..|+-++..
T Consensus 4 ~~~dvivvgaglaglvaa~elA~-----aG~~V~ildQEgeqnlGGQAf--------WSfGGLF~vd 57 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELAD-----AGKRVLILDQEGEQNLGGQAF--------WSFGGLFLVD 57 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHh-----cCceEEEEcccccccccceee--------eecccEEEec
Confidence 46899999999999999999999 9999999998643 555443 4556655443
No 174
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.48 E-value=3.1e-06 Score=88.05 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=40.0
Q ss_pred HHHHHHHHHh--cCCeEEeCCceEEEEEeCCEE-EEEEc--cCc--eEecCEEEEccCCCC
Q 043512 257 WQMAAGLINR--SDVALHLHEEIESISYLREYY-ELNST--KGN--SYTCQITVVATPLDE 310 (487)
Q Consensus 257 ~~l~~~l~~~--~G~~i~~~~~V~~I~~~~~~v-~V~~~--~G~--~~~ad~VV~a~~~~~ 310 (487)
..+.+.|.+. .|++|+.+++|+++..+++++ +|.+. +|+ .+.|+.||+|++-..
T Consensus 130 ~~i~~~L~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELVPHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHhcCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 3466666554 489999999999998777765 55543 333 688999999998754
No 175
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.48 E-value=5.3e-07 Score=90.57 Aligned_cols=52 Identities=12% Similarity=0.019 Sum_probs=39.4
Q ss_pred HHHHHHHH---hcCCeEEeCCceEEEEEeCCEEE-EEEccC--ceEecCEEEEccCCC
Q 043512 258 QMAAGLIN---RSDVALHLHEEIESISYLREYYE-LNSTKG--NSYTCQITVVATPLD 309 (487)
Q Consensus 258 ~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G--~~~~ad~VV~a~~~~ 309 (487)
++.+.|.+ +.|++|+++++|+++..+++++. +.+.+| ..++||.||+|++..
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 45555544 45999999999999998877764 444455 358999999999874
No 176
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.47 E-value=3.9e-06 Score=88.62 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=34.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCC--CCeEEEEecCCCccc
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERNGVVGG 63 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~--G~~V~VlE~~~~~GG 63 (487)
...||+|||||++||+||..+++ . |.+|+|+||....||
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~-----~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAE-----ANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHH-----hCCCCcEEEEEccCCCCC
Confidence 35799999999999999999998 5 579999999876665
No 177
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.47 E-value=4.6e-06 Score=87.91 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=34.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM 65 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~ 65 (487)
..||+|||||++||+||..+++.. +|.+|+|+||....||.+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g---~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEAN---PHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhC---CCCcEEEEEccCCCCCCc
Confidence 479999999999999999999811 268999999997766633
No 178
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.46 E-value=3e-06 Score=89.69 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=32.1
Q ss_pred EEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 24 VvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
|+|||||+|||+||..+++ .|.+|+|+||...+||
T Consensus 1 VlVVG~G~AGl~AAl~Aae-----~G~~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAE-----LGYHVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHH-----cCCCEEEEEecCCCCC
Confidence 7999999999999999999 9999999999875653
No 179
>PLN02815 L-aspartate oxidase
Probab=98.43 E-value=3e-06 Score=89.25 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=34.1
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
..||+|||||++||+||..+++ .| +|+|+||....||
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae-----~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAE-----YG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhh-----CC-CEEEEECCCCCCC
Confidence 4799999999999999999999 99 9999999887666
No 180
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.43 E-value=4e-06 Score=87.26 Aligned_cols=54 Identities=13% Similarity=0.037 Sum_probs=38.9
Q ss_pred HHHHHHHHHh----cCCeEEeCCceEEEEEeCCEE-EEEEc-cCc--eEecCEEEEccCCCC
Q 043512 257 WQMAAGLINR----SDVALHLHEEIESISYLREYY-ELNST-KGN--SYTCQITVVATPLDE 310 (487)
Q Consensus 257 ~~l~~~l~~~----~G~~i~~~~~V~~I~~~~~~v-~V~~~-~G~--~~~ad~VV~a~~~~~ 310 (487)
..+.+.|.+. .|++|+.+++|+++..+++++ +|.+. +++ .+.|+.||+|++-..
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 4566666442 389999999999998776665 55543 232 589999999999753
No 181
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.42 E-value=1.8e-06 Score=88.28 Aligned_cols=61 Identities=7% Similarity=0.026 Sum_probs=42.6
Q ss_pred ceEee-cchHHHHHHHHHhcCCeEEeCCceEEEEEeCCE-E-EEEEccCceEecCEEEEccCCCC
Q 043512 249 LWAVE-GGNWQMAAGLINRSDVALHLHEEIESISYLREY-Y-ELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 249 ~~~~~-gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~-v-~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
.|++. .-+.++....+++.|++++.++ |+++..++++ + .|++.+|++++||.||=|++...
T Consensus 148 ayhlDR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 148 AYHLDRAKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred eEEEeHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 34443 4456666666777899998875 7888776544 4 78999999999999999999864
No 182
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.41 E-value=3.9e-06 Score=83.39 Aligned_cols=55 Identities=5% Similarity=-0.022 Sum_probs=43.7
Q ss_pred HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEccC--ceEecCEEEEccCCCCC
Q 043512 257 WQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTKG--NSYTCQITVVATPLDEL 311 (487)
Q Consensus 257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G--~~~~ad~VV~a~~~~~~ 311 (487)
.++.++|.+ +.|+++..+++|+++..+++++ .|.+.++ ..+.||+||+|++.|.+
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S 323 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFS 323 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcC
Confidence 455555544 5699999999999999888877 5666665 48999999999999843
No 183
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.39 E-value=4.1e-06 Score=95.16 Aligned_cols=42 Identities=21% Similarity=0.445 Sum_probs=38.5
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM 65 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~ 65 (487)
....||+|||+|.+|++||..+++ .|.+|+|+||.+..||.+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae-----~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAAS-----CGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH-----CCCcEEEEEccCCCCCch
Confidence 456899999999999999999999 999999999999888854
No 184
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.37 E-value=4.2e-06 Score=86.64 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=32.0
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
+||+|||||++|+.||..+++ .|.+|+|+|++...
T Consensus 1 yDViVIGaG~AGl~aA~ala~-----~G~~v~Lie~~~~~ 35 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAAR-----MGAKTLLLTLNLDT 35 (617)
T ss_pred CeEEEECccHHHHHHHHHHHH-----CCCCEEEEeccccc
Confidence 589999999999999999999 99999999997433
No 185
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.36 E-value=1.6e-05 Score=83.36 Aligned_cols=40 Identities=33% Similarity=0.469 Sum_probs=35.2
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR 64 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr 64 (487)
....||+|||+|++||+||..+++ . .+|+|+||....||.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~-----~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAE-----H-RRVAVLSKGPLSEGS 45 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHH-----C-CCEEEEeccCCCCCC
Confidence 456899999999999999999998 7 899999998876663
No 186
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.35 E-value=5.8e-07 Score=98.42 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=40.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT 67 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s 67 (487)
..++|+|||||+|||+||++|++ .|++|+|+|+.+.+||.++.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-----~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-----AGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCCeEEEEecccccCceeee
Confidence 45799999999999999999999 99999999999999998864
No 187
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.34 E-value=6.3e-07 Score=98.88 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=40.3
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
+..++|+|||||+|||+||++|++ .|++|+|||+.+++||.++
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar-----~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAV-----EGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH-----CCCeEEEEeeCCCCCceEE
Confidence 457899999999999999999999 9999999999999999875
No 188
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.34 E-value=7.4e-07 Score=90.92 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=35.1
Q ss_pred CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
+...+.+||+|||||++|++||+.|++ +|++|+|+|++.
T Consensus 34 ~~~~~~~DViIVGaGPAG~~aA~~LA~-----~G~~VlllEr~~ 72 (450)
T PLN00093 34 KLSGRKLRVAVIGGGPAGACAAETLAK-----GGIETFLIERKL 72 (450)
T ss_pred CcCCCCCeEEEECCCHHHHHHHHHHHh-----CCCcEEEEecCC
Confidence 344567899999999999999999999 999999999974
No 189
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.32 E-value=1.5e-05 Score=79.43 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=50.5
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEee--CCeEecccceeEecCChhHHHHHHHc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTI--SGQTFEAGASILHPKNYHTVNFTKLL 96 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~--~g~~~d~G~~~~~~~~~~~~~~~~~l 96 (487)
.+++=|||+|||+|+||.+|-+..+- .|.+|+|||+.+.+||.+-.... .||..--|.. .......++++++..
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~-pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~-~~~~~eclwdLls~I 77 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKM-PGENIHILEELDVPGGSLDGAGDPENGYVIRGGRM-MEFHYECLWDLLSSI 77 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCC-CccceEEEeCCCCCCCcccCCCCCCCCeeecCCcc-ccchhHHHHHHHHhC
Confidence 46788999999999999999984322 67899999999999998876543 3554433322 222233344555443
No 190
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.31 E-value=1.9e-05 Score=83.33 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHH----HhcCCCCCCeEEEEecCCC
Q 043512 23 TVCIIGSGIGGSSLAHFLR----QYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~----~~~~~~~G~~V~VlE~~~~ 60 (487)
||+|||||+|||+||..++ + +|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e-----~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDK-----KGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhh-----CCCeEEEEEccCC
Confidence 7999999999999999998 6 8999999999764
No 191
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.31 E-value=6.6e-07 Score=92.25 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=40.1
Q ss_pred HHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 264 INRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
+++.|++++++++|++|..+++++.+++.+|+++++|.||+|++...
T Consensus 226 l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 272 (461)
T PRK05249 226 LRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTG 272 (461)
T ss_pred HHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCc
Confidence 34569999999999999887777777777888899999999998764
No 192
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.30 E-value=1.1e-06 Score=89.75 Aligned_cols=49 Identities=24% Similarity=0.264 Sum_probs=41.7
Q ss_pred CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEE
Q 043512 16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT 67 (487)
Q Consensus 16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s 67 (487)
...+..++|+|||||+||++||..|++.. .|++|+|||+.+.+||..+.
T Consensus 21 ~~~~~~~~VaIVGaGPAGl~AA~~L~~~~---~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 21 SSTSEPLHVCVVGSGPAGFYTADKLLKAH---DGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCCCCCcEEEECccHHHHHHHHHHHhhC---CCCeEEEEecCCCCcceEee
Confidence 34445678999999999999999998632 59999999999999998874
No 193
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.30 E-value=9.3e-06 Score=80.16 Aligned_cols=52 Identities=12% Similarity=0.099 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCc-eEecCEEEEccCCCCC
Q 043512 256 NWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGN-SYTCQITVVATPLDEL 311 (487)
Q Consensus 256 ~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~-~~~ad~VV~a~~~~~~ 311 (487)
....++..++++|++|++++.|++|..+ +|++.+|+ .+.++.||.|++....
T Consensus 211 l~~~a~~~L~~~GV~v~l~~~Vt~v~~~----~v~~~~g~~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 211 LSKYAERALEKLGVEVLLGTPVTEVTPD----GVTLKDGEEEIPADTVVWAAGVRAS 263 (405)
T ss_pred HHHHHHHHHHHCCCEEEcCCceEEECCC----cEEEccCCeeEecCEEEEcCCCcCC
Confidence 4556777788899999999999999765 36666776 4999999999998754
No 194
>PRK12831 putative oxidoreductase; Provisional
Probab=98.30 E-value=1.1e-06 Score=90.30 Aligned_cols=44 Identities=27% Similarity=0.323 Sum_probs=40.4
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
....+||+|||||++||+||++|++ .|++|+|+|+.+.+||.+.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~-----~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAK-----MGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHh-----CCCeEEEEecCCCCCCeee
Confidence 3457899999999999999999999 9999999999999999775
No 195
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.27 E-value=8.1e-07 Score=85.15 Aligned_cols=49 Identities=33% Similarity=0.424 Sum_probs=40.8
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCC-CCCeEEEEecCCCccceeE
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKN-WHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~-~G~~V~VlE~~~~~GGr~~ 66 (487)
.....||+|||||++|||||.+|.++..+- ...+|.|+||...+||.+-
T Consensus 73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gghtl 122 (621)
T KOG2415|consen 73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTL 122 (621)
T ss_pred hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCcee
Confidence 344679999999999999999999865421 5689999999999999665
No 196
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.27 E-value=9.3e-07 Score=91.07 Aligned_cols=41 Identities=29% Similarity=0.354 Sum_probs=38.2
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
.+||+|||||++|++||..+++ .|++|+|+|+++.+||.|.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~-----~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQ-----LGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CCCeEEEEecCCceeeeec
Confidence 4899999999999999999999 9999999998778999874
No 197
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.24 E-value=1e-06 Score=90.26 Aligned_cols=51 Identities=14% Similarity=0.219 Sum_probs=41.3
Q ss_pred HHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 260 AAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 260 ~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
....+++.|++++++++|++|..+++++.|.+.+|+++.+|.||+|++...
T Consensus 213 l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~p 263 (446)
T TIGR01424 213 LARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSP 263 (446)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCc
Confidence 333445669999999999999877667777777888899999999998753
No 198
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.23 E-value=1.6e-06 Score=94.73 Aligned_cols=44 Identities=30% Similarity=0.466 Sum_probs=40.7
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEE
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT 67 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s 67 (487)
+..++|+|||||++|++||+.|++ .|++|+|+|+.+.+||.++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar-----~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLAR-----AGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHH-----cCCeEEEEecccccCcceee
Confidence 456899999999999999999999 99999999999999998764
No 199
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.23 E-value=1.2e-06 Score=90.34 Aligned_cols=52 Identities=12% Similarity=0.174 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccC--ceEecCEEEEccCCCC
Q 043512 259 MAAGLINRSDVALHLHEEIESISYLREYYELNSTKG--NSYTCQITVVATPLDE 310 (487)
Q Consensus 259 l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G--~~~~ad~VV~a~~~~~ 310 (487)
.....+++.|++++++++|++|..+++++.+.+.+| +++.+|.||++++...
T Consensus 216 ~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 216 VVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred HHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcc
Confidence 333444566999999999999998877887777677 4799999999998754
No 200
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.23 E-value=1.4e-06 Score=89.22 Aligned_cols=53 Identities=9% Similarity=0.124 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
.......+++.|++++++++|++|..+++.+.+.+ +|+++.+|.||+|++...
T Consensus 201 ~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~p 253 (438)
T PRK07251 201 AALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRKP 253 (438)
T ss_pred HHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCCC
Confidence 33444455667999999999999987766666654 566899999999988754
No 201
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.22 E-value=1.7e-05 Score=79.64 Aligned_cols=66 Identities=26% Similarity=0.401 Sum_probs=53.2
Q ss_pred CCceEeecch---HHHHHHHHHhc--CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC
Q 043512 247 GGLWAVEGGN---WQMAAGLINRS--DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN 312 (487)
Q Consensus 247 ~g~~~~~gG~---~~l~~~l~~~~--G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~ 312 (487)
.+.|.+.+|. ..++.+|++.+ |++|+.+++|++|+.+++++.|+|.+|..+.||.||+|++.+...
T Consensus 122 gal~~~~~g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~~ 192 (381)
T TIGR03197 122 GGLFFPQGGWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQ 192 (381)
T ss_pred CceEeCCCcccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccccc
Confidence 3456666653 56777776522 899999999999998888899999999779999999999998754
No 202
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.22 E-value=1.3e-06 Score=85.42 Aligned_cols=44 Identities=30% Similarity=0.520 Sum_probs=40.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATV 68 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~ 68 (487)
...+++|||||++|++||..|++ .|++|.++||++.+|||+...
T Consensus 123 v~~svLVIGGGvAGitAAl~La~-----~G~~v~LVEKepsiGGrmak~ 166 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELAD-----MGFKVYLVEKEPSIGGRMAKL 166 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHH-----cCCeEEEEecCCcccccHHhh
Confidence 45789999999999999999999 999999999999999997643
No 203
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.21 E-value=1.3e-06 Score=90.66 Aligned_cols=40 Identities=28% Similarity=0.395 Sum_probs=34.4
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
++|+|||||++||++|..|.+ .|++|++|||++.+||--+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e-----~g~~~~~fE~~~~iGG~W~ 41 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE-----EGLEVTCFEKSDDIGGLWR 41 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH-----TT-EEEEEESSSSSSGGGC
T ss_pred CEEEEECccHHHHHHHHHHHH-----CCCCCeEEecCCCCCccCe
Confidence 689999999999999999999 9999999999999999764
No 204
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.20 E-value=1.5e-06 Score=89.55 Aligned_cols=54 Identities=7% Similarity=0.145 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccC---ceEecCEEEEccCCCC
Q 043512 257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKG---NSYTCQITVVATPLDE 310 (487)
Q Consensus 257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VV~a~~~~~ 310 (487)
.......+++.|++++++++|++|..+++++.+.+.+| +++.+|.||++++...
T Consensus 216 ~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 216 SKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRP 272 (462)
T ss_pred HHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCcc
Confidence 33444445567999999999999998777777776665 6799999999998764
No 205
>PRK14727 putative mercuric reductase; Provisional
Probab=98.19 E-value=2.1e-06 Score=88.77 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=43.1
Q ss_pred CCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEE
Q 043512 15 QPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT 67 (487)
Q Consensus 15 ~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s 67 (487)
+...+..+||+|||||++|+++|..|++ .|.+|+|+|+.+.+||.|..
T Consensus 10 ~~~~~~~~dvvvIG~G~aG~~~a~~~~~-----~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 10 MTRSKLQLHVAIIGSGSAAFAAAIKAAE-----HGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred cccCCCCCcEEEECCCHHHHHHHHHHHh-----CCCeEEEEEccCcceeEecc
Confidence 4556677999999999999999999999 99999999998889998863
No 206
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.19 E-value=1.9e-06 Score=88.26 Aligned_cols=41 Identities=29% Similarity=0.399 Sum_probs=37.6
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC-CccceeE
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG-VVGGRMA 66 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~-~~GGr~~ 66 (487)
.+||+|||||++|++||..|++ .|++|+|+|+.+ .+||.|.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~-----~g~~V~lie~~~~~~GG~~~ 44 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAK-----AGWRVALIEQSNAMYGGTCI 44 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHH-----CCCeEEEEcCCCCccceeEe
Confidence 5899999999999999999999 999999999976 4798875
No 207
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.19 E-value=1.6e-06 Score=88.90 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=37.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
.+||+|||||++|++||..|++ .|++|+|+|+. .+||.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~-----~G~~V~liE~~-~~GG~c~ 41 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAE-----HGAKALLVEAK-KLGGTCV 41 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHH-----CCCcEEEeccc-cccccee
Confidence 5899999999999999999999 99999999995 6899764
No 208
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.17 E-value=1.7e-06 Score=87.97 Aligned_cols=39 Identities=26% Similarity=0.511 Sum_probs=32.9
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
||||||||++|++||..+++ .|.+|+|+|+.+.+||...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr-----~G~~VlLiE~~~~lGG~~t 39 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAAR-----AGAKVLLIEKGGFLGGMAT 39 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHH-----TTS-EEEE-SSSSSTGGGG
T ss_pred CEEEECccHHHHHHHHHHHH-----CCCEEEEEECCccCCCcce
Confidence 89999999999999999999 9999999999999998653
No 209
>PRK06116 glutathione reductase; Validated
Probab=98.16 E-value=1.9e-06 Score=88.47 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=39.7
Q ss_pred HHHhcCCeEEeCCceEEEEEeCCE-EEEEEccCceEecCEEEEccCCCC
Q 043512 263 LINRSDVALHLHEEIESISYLREY-YELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 263 l~~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
.+++.|++++++++|++|..++++ +.|.+.+|+++.+|.||++++...
T Consensus 217 ~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p 265 (450)
T PRK06116 217 EMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREP 265 (450)
T ss_pred HHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCc
Confidence 345669999999999999876554 778888888899999999998653
No 210
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.15 E-value=3.2e-06 Score=86.55 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=39.4
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
...++|+|||||++||+||+.|++ .|++|+|+|+.+.+||.+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~-----~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAK-----AGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH-----CCCcEEEEecCCCCCcEee
Confidence 356899999999999999999999 9999999999999998664
No 211
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.15 E-value=2.4e-06 Score=88.15 Aligned_cols=42 Identities=24% Similarity=0.314 Sum_probs=38.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
..+||+|||||++|++||..|++ .|++|+|+|+.+.+||.|.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~-----~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAAD-----LGLETVCVERYSTLGGVCL 44 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHH-----CCCcEEEEecCCccccccc
Confidence 35899999999999999999999 9999999999878999663
No 212
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.14 E-value=2.7e-06 Score=87.92 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=38.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
..+||+|||||++|++||..|++ .|++|+|+|+. .+||.|.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~-----~G~~v~lie~~-~~GG~c~ 43 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQ-----LGLKTALVEKG-KLGGTCL 43 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-----CCCeEEEEEcc-CCCcceE
Confidence 46899999999999999999999 99999999995 7899875
No 213
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.14 E-value=2.8e-06 Score=94.61 Aligned_cols=42 Identities=31% Similarity=0.403 Sum_probs=39.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
..++|+|||||++||+||++|++ .|++|+|||+.+.+||..+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~-----~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVK-----YGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----cCCcEEEEecCCCCcceee
Confidence 46799999999999999999999 9999999999999999765
No 214
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.14 E-value=3.2e-06 Score=85.54 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=40.7
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
.....+|+|||||++||+||+.|++ .|++|+|+|+.+.+||++.
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~-----~G~~Vtv~e~~~~~GGll~ 163 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSR-----AGHDVTVFERVALDGGLLL 163 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHh-----CCCeEEEeCCcCCCceeEE
Confidence 3345899999999999999999999 9999999999999999887
No 215
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.13 E-value=3.4e-06 Score=90.52 Aligned_cols=43 Identities=26% Similarity=0.492 Sum_probs=39.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
+..++|+|||||++||+||+.|++ .|++|+|+|+.+.+||...
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~-----~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLAR-----NGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH-----CCCeEEEEecCCCCCceee
Confidence 356899999999999999999999 9999999999999999765
No 216
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.12 E-value=3.3e-06 Score=88.80 Aligned_cols=42 Identities=24% Similarity=0.386 Sum_probs=38.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT 67 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s 67 (487)
..+||+|||||+|||+||..|++ .|++|+|+|++ .+||.+..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar-----~g~~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGR-----AKLDTLIIEKD-DFGGQITI 44 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHH-----CCCCEEEEecC-CCCceEEe
Confidence 35899999999999999999999 99999999995 68998753
No 217
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.12 E-value=6e-05 Score=83.76 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=34.2
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
.....||+|||||++||+||..+++ .|.+|+|+||...
T Consensus 10 ~~~~~DVlVVG~G~AGl~AAl~Aa~-----~G~~V~lleK~~~ 47 (897)
T PRK13800 10 LRLDCDVLVIGGGTAGTMAALTAAE-----HGANVLLLEKAHV 47 (897)
T ss_pred ceeecCEEEECcCHHHHHHHHHHHH-----CCCeEEEEecccc
Confidence 3356899999999999999999999 9999999999863
No 218
>PRK06370 mercuric reductase; Validated
Probab=98.12 E-value=3.3e-06 Score=87.06 Aligned_cols=41 Identities=27% Similarity=0.443 Sum_probs=36.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
.++||+|||||++|++||..|++ .|++|+|+|+. .+||.|.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~-----~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAG-----LGMKVALIERG-LLGGTCV 44 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-----CCCeEEEEecC-ccCCcee
Confidence 35899999999999999999999 99999999996 5777664
No 219
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.11 E-value=2.8e-06 Score=85.64 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=33.0
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcc
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVG 62 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~G 62 (487)
+||+|||||++|++||+.|++ +|++|+|+||+...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~-----~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS-----AGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh-----CCCcEEEEecCCCCC
Confidence 589999999999999999999 999999999986543
No 220
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.11 E-value=4.5e-06 Score=84.09 Aligned_cols=44 Identities=20% Similarity=0.141 Sum_probs=39.3
Q ss_pred CCCcEEEECCChhHHHHHHHHH-HhcCCCCCCeEEEEecCCCccceeEEE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLR-QYSSKNWHPRILMFERNGVVGGRMATV 68 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~-~~~~~~~G~~V~VlE~~~~~GGr~~s~ 68 (487)
..++|+|||||++|++||.+|+ + .|++|+|||+.+.+||..+.-
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~-----~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH-----ERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh-----cCCeEEEEecCCCCccEEEEe
Confidence 4578999999999999999765 5 799999999999999998864
No 221
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.11 E-value=3.2e-06 Score=87.21 Aligned_cols=41 Identities=24% Similarity=0.431 Sum_probs=37.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
..+||+|||||++|++||..|++ .|++|+|+|+ +.+||.|.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~-----~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAK-----LGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHH-----CCCeEEEEeC-Ccccccee
Confidence 35899999999999999999999 9999999999 67899764
No 222
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.10 E-value=3.9e-06 Score=89.17 Aligned_cols=47 Identities=34% Similarity=0.543 Sum_probs=42.3
Q ss_pred CCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 15 QPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 15 ~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
++.....++|+|||+|++||+||-.|-+ .|+-|+|+||.+|+||-..
T Consensus 1779 pp~~rtg~~vaiigsgpaglaaadqlnk-----~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1779 PPAFRTGKRVAIIGSGPAGLAAADQLNK-----AGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred CcccccCcEEEEEccCchhhhHHHHHhh-----cCcEEEEEEecCCcCceee
Confidence 4445557899999999999999999999 9999999999999999776
No 223
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.09 E-value=4.2e-06 Score=80.94 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=33.3
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
+.+||||||||+||++|..|.+ +|++|+|||++..+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r-----~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHR-----KGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHH-----cCCeEEEEeecccc
Confidence 5689999999999999999999 99999999997654
No 224
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.08 E-value=5.1e-06 Score=90.70 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=39.6
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
...++|+|||||++||+||+.|++ .|++|+|+|+.+.+||...
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~-----~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAK-----RGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH-----CCCeEEEEecCCCCCCeee
Confidence 356799999999999999999999 9999999999989999765
No 225
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.07 E-value=4.5e-06 Score=86.13 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=37.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
.+||+|||||++|++||.+|++ .|.+|+|+|++ .+||.|.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~-----~G~~V~lie~~-~~GG~c~ 43 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQ-----LGLKTAVVEKK-YWGGVCL 43 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHh-----CCCeEEEEecC-CCCCcee
Confidence 5899999999999999999999 99999999995 6888775
No 226
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.06 E-value=6.3e-06 Score=85.01 Aligned_cols=42 Identities=29% Similarity=0.485 Sum_probs=38.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
..++|+|||||++|++||..|++ .|++|+|+|+.+.+||...
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~-----~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR-----AGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-----CCCcEEEEecCCCCCceee
Confidence 45799999999999999999999 9999999999999998754
No 227
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.06 E-value=4.4e-06 Score=86.22 Aligned_cols=39 Identities=28% Similarity=0.357 Sum_probs=35.8
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
+||+|||||++|++||..|++ .|++|+|+|+.. +||.|-
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~-----~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAE-----LGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCCeEEEEeCCc-ccCCee
Confidence 699999999999999999999 999999999975 788764
No 228
>PRK10262 thioredoxin reductase; Provisional
Probab=98.06 E-value=5.1e-06 Score=81.36 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=38.6
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEE
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT 67 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s 67 (487)
+...+||+|||||++||+||..|++ .|++|+++|+. ..||.+..
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~-----~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAAR-----ANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHH-----CCCCeEEEEee-cCCCceec
Confidence 4567899999999999999999999 99999999975 67887654
No 229
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.05 E-value=6.7e-06 Score=84.61 Aligned_cols=43 Identities=28% Similarity=0.438 Sum_probs=39.3
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
...++|+|||||++|+++|+.|++ .|++|+|+|+++.+||...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~-----~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLAR-----KGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh-----CCCeEEEEccCCCCCcEee
Confidence 456899999999999999999999 9999999999999998654
No 230
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.04 E-value=5.7e-06 Score=86.99 Aligned_cols=42 Identities=24% Similarity=0.479 Sum_probs=38.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC--CccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG--VVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~--~~GGr~~ 66 (487)
...||+|||+|++||+||..+++ .|.+|+|+||.+ .+||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~-----~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELAD-----AGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHH-----CCCeEEEEeCCCCCCCCCcee
Confidence 46899999999999999999999 999999999998 7888654
No 231
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.04 E-value=4.5e-05 Score=71.12 Aligned_cols=39 Identities=26% Similarity=0.511 Sum_probs=35.6
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
-|||||+|++||+|+..+-. .|-.|+++|++..+||...
T Consensus 11 pvvVIGgGLAGLsasn~iin-----~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIIN-----KGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHh-----cCCeEEEEeccCCcCCcce
Confidence 49999999999999999999 8888999999999998653
No 232
>PRK14694 putative mercuric reductase; Provisional
Probab=98.04 E-value=5.3e-06 Score=85.62 Aligned_cols=42 Identities=24% Similarity=0.398 Sum_probs=38.3
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
...+||+|||||++|++||..|++ .|++|+|+|+. .+||.|.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~-----~g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATE-----RGARVTLIERG-TIGGTCV 45 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHh-----CCCcEEEEEcc-cccccee
Confidence 356899999999999999999999 99999999996 6899775
No 233
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.04 E-value=6.8e-06 Score=87.97 Aligned_cols=42 Identities=31% Similarity=0.480 Sum_probs=39.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
..++|+|||||++||++|+.|++ .|++|+|+|+++.+||..+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~-----~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR-----KGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCCcEEEEecCCCCCceee
Confidence 45799999999999999999999 9999999999999999765
No 234
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.04 E-value=6.2e-06 Score=89.10 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=36.3
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
.+..++|+|||||+|||+||++|++ .|++|+|+|+....|+
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~-----~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLR-----SGHNVTAIDGLKITLL 420 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHh-----CCCeEEEEcccccccc
Confidence 3457899999999999999999999 9999999999766554
No 235
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.04 E-value=7e-06 Score=87.80 Aligned_cols=43 Identities=26% Similarity=0.481 Sum_probs=39.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
+..++|+|||||++||++|+.|++ .|++|+|+|+.+.+||..+
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~-----~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILAR-----AGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH-----cCCcEEEEeCCCCCCCeee
Confidence 357899999999999999999999 9999999999999999765
No 236
>PTZ00058 glutathione reductase; Provisional
Probab=98.03 E-value=5.2e-06 Score=86.75 Aligned_cols=41 Identities=22% Similarity=0.416 Sum_probs=37.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
..+||+|||||++|.+||..+++ .|.+|+|+|+. .+||.|-
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~-----~G~~ValIEk~-~~GGtCl 87 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAAR-----NKAKVALVEKD-YLGGTCV 87 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHH-----cCCeEEEEecc-ccccccc
Confidence 46799999999999999999999 99999999996 7999774
No 237
>PRK13748 putative mercuric reductase; Provisional
Probab=98.03 E-value=5.5e-06 Score=87.66 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=37.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
..+||+|||||++|++||..|++ .|.+|+|+|++ .+||-|.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~-----~G~~v~lie~~-~~GG~c~ 137 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVE-----QGARVTLIERG-TIGGTCV 137 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHh-----CCCeEEEEecC-cceeecc
Confidence 36899999999999999999999 99999999997 7999774
No 238
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.00024 Score=67.70 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=41.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEee
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTI 70 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~ 70 (487)
.+||+|.|-|+--...+..|+. +|.+|+++|+++.-|+-.++.+.
T Consensus 6 ~yDvii~GTgl~esils~~Ls~-----~~k~VlhiD~Nd~YG~~~asltl 50 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSW-----DGKNVLHIDKNDYYGSTSASLTL 50 (434)
T ss_pred cccEEEecccHHHHHHHHHhhh-----cCceEEEEeCCCccCccccceeH
Confidence 6999999999999999999999 99999999999999998887653
No 239
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.01 E-value=9.4e-06 Score=83.51 Aligned_cols=43 Identities=26% Similarity=0.505 Sum_probs=39.8
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
+..++|+|||||++|++||+.|++ .|++|+|+|+.+.+||..+
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~-----~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILAR-----AGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH-----cCCeEEEEecCCCCCceee
Confidence 356899999999999999999999 9999999999999999765
No 240
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.00 E-value=7.2e-06 Score=86.59 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=39.0
Q ss_pred CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512 17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR 64 (487)
Q Consensus 17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr 64 (487)
....+.||+|||+|++||+||+.+++ .|.+|+|+||.+..||.
T Consensus 7 ~~~~~~DVvVVG~G~AGl~AA~~aae-----~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 7 NFDREVDVLVVGSGGGGMTAALTAAA-----RGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CccCcCCEEEECccHHHHHHHHHHHH-----CCCcEEEEEcCCCCCch
Confidence 45567899999999999999999999 99999999999888874
No 241
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.98 E-value=7.8e-06 Score=84.50 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=37.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEec------CCCccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFER------NGVVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~------~~~~GGr~~ 66 (487)
..+||+|||||++|++||..+++ .|.+|+|+|+ ...+||.|.
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~-----~g~~v~lie~~~~~~g~~~~Gg~c~ 50 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQ-----LGLKVACIEAWKNPKGKPALGGTCL 50 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHh-----CCCeEEEEecccCCCCCCCcCCccc
Confidence 35899999999999999999999 9999999998 356777664
No 242
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.98 E-value=6.8e-05 Score=69.74 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=36.3
Q ss_pred CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcc
Q 043512 17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVG 62 (487)
Q Consensus 17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~G 62 (487)
...+.+|.|||||||.|+++|..|.-.+ .+.+|.|+|+...++
T Consensus 44 ~s~~~~D~VvvGgGiVGlAsARel~lrh---p~l~V~vleke~~la 86 (453)
T KOG2665|consen 44 ISKERYDLVVVGGGIVGLASARELSLRH---PSLKVAVLEKEKSLA 86 (453)
T ss_pred cccccccEEEECCceeehhhhHHHhhcC---CCceEEeeehhhhhc
Confidence 3445789999999999999999997633 699999999987765
No 243
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.97 E-value=8.4e-06 Score=80.93 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=33.3
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
..||+|||||++|+.||+.|++ .|++|+|+|+.+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr-----~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAK-----RGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHh-----CCCcEEEEEccCcc
Confidence 4699999999999999999999 99999999987654
No 244
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=7.7e-06 Score=78.54 Aligned_cols=43 Identities=28% Similarity=0.451 Sum_probs=35.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCe-EEEEecCCCccceeEEE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPR-ILMFERNGVVGGRMATV 68 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~-V~VlE~~~~~GGr~~s~ 68 (487)
+.+||+|||||++||+||.++++ +|.+ ++|+|+ ..+||.....
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r-----~~l~~~li~~~-~~~gg~~~~~ 45 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAAR-----AGLKVVLILEG-GEPGGQLTKT 45 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHH-----cCCCcEEEEec-CCcCCccccc
Confidence 46899999999999999999999 9998 666666 5678766544
No 245
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.97 E-value=9.6e-06 Score=85.31 Aligned_cols=44 Identities=27% Similarity=0.292 Sum_probs=39.2
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
+....||+|||+|++|++||..+++ .|.+|+|+||...+||.+.
T Consensus 4 ~~~~~DvvVvG~G~aG~~aA~~aa~-----~G~~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 4 TVQEYDVVVVGSGAAGMVAALTAAH-----RGLSTVVVEKAPHYGGSTA 47 (557)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHH-----CCCCEEEEeCCCCCCcccc
Confidence 3447899999999999999999999 9999999999988887544
No 246
>PLN02507 glutathione reductase
Probab=97.97 E-value=9e-06 Score=84.34 Aligned_cols=53 Identities=11% Similarity=0.221 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 258 QMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 258 ~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
..+...+++.|++|+++++|++|..+++++.|.+.+|+++.+|.||++++...
T Consensus 248 ~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~p 300 (499)
T PLN02507 248 AVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAP 300 (499)
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCC
Confidence 33444455679999999999999877777778888888899999999998754
No 247
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.95 E-value=9.1e-06 Score=84.35 Aligned_cols=52 Identities=8% Similarity=-0.010 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 259 MAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 259 l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
.....+++.|+++++++.|++|...++.+.|.+.+|+++.+|.||++++...
T Consensus 227 ~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~p 278 (499)
T PTZ00052 227 KVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKP 278 (499)
T ss_pred HHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCC
Confidence 3344455669999999999999876666777777888899999999999764
No 248
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.92 E-value=1.3e-05 Score=82.82 Aligned_cols=48 Identities=6% Similarity=0.115 Sum_probs=38.5
Q ss_pred HHHhcCCeEEeCCceEEEEEeCCE-EEEEEccCceEecCEEEEccCCCC
Q 043512 263 LINRSDVALHLHEEIESISYLREY-YELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 263 l~~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
.+++.|+++++++.|++|..++++ ..|.+.+|+++.+|.||++++...
T Consensus 240 ~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~P 288 (486)
T TIGR01423 240 QLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVP 288 (486)
T ss_pred HHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCc
Confidence 344569999999999999876444 567777788899999999998653
No 249
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.90 E-value=1.8e-05 Score=81.76 Aligned_cols=42 Identities=29% Similarity=0.453 Sum_probs=39.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
..++|+|||||++|++||..|++ .|++|+|+|+.+++||.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-----~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-----AGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----cCCeEEEEecCCCCCceee
Confidence 45799999999999999999999 9999999999999998775
No 250
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.88 E-value=1.7e-05 Score=84.25 Aligned_cols=41 Identities=29% Similarity=0.516 Sum_probs=36.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC-CCccceeE
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN-GVVGGRMA 66 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~-~~~GGr~~ 66 (487)
.+||+|||||.+|.+||..+++ .|.+|+|+|+. +.+||-|-
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~-----~G~kV~lie~~~~~lGGtCv 157 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAME-----RGLKVIIFTGDDDSIGGTCV 157 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHH-----CCCcEEEEeCCCCcccccee
Confidence 5799999999999999999999 99999999974 46888764
No 251
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.88 E-value=1.4e-05 Score=89.44 Aligned_cols=42 Identities=19% Similarity=0.360 Sum_probs=39.3
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEE
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT 67 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s 67 (487)
.+||+|||||++||+||..|++ .|++|+|+|+.+.+||....
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar-----~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAAR-----AGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHh-----CCCcEEEEecCCCCCCeeec
Confidence 5799999999999999999999 99999999999999998763
No 252
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.87 E-value=1.8e-05 Score=80.07 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=38.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
..+|++|||||++|.+||.++++ .|.+|.++|+...+||-|-
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~-----~G~kvalvE~~~~lGGtCl 44 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQ-----LGLKVALVEKGERLGGTCL 44 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-----CCCCEEEEeecCCcCceEE
Confidence 57999999999999999999999 9999999999878998775
No 253
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.86 E-value=1.5e-05 Score=84.30 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=34.6
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
+.||+|||||+|||+||..+++ .|.+|+|+||....||
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~-----~G~~V~lieK~~~~~g 40 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAE-----AGVHVDLFSLVPVKRS 40 (589)
T ss_pred CccEEEECchHHHHHHHHHHHH-----cCCcEEEEEccCCCCC
Confidence 4599999999999999999999 9999999999876555
No 254
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.86 E-value=2.5e-05 Score=82.57 Aligned_cols=44 Identities=32% Similarity=0.441 Sum_probs=39.8
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
.....+|+|||||++||++|+.|++ .|++|+|+|+.+.+||..+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~-----~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR-----MGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-----CCCeEEEEecCCCCCCeee
Confidence 3456789999999999999999999 9999999999999999654
No 255
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.85 E-value=1.8e-05 Score=75.53 Aligned_cols=36 Identities=33% Similarity=0.488 Sum_probs=33.0
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN 58 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~ 58 (487)
.....||||||||++|.+.|+.|+| .|.+|.|+||.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~k-----dGRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAK-----DGRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhh-----CCcEEEEEecc
Confidence 3456899999999999999999999 99999999995
No 256
>PLN02546 glutathione reductase
Probab=97.84 E-value=2.3e-05 Score=82.04 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=37.5
Q ss_pred HHHHHHhcCCeEEeCCceEEEEEeC-CEEEEEEccCceEecCEEEEccCCCC
Q 043512 260 AAGLINRSDVALHLHEEIESISYLR-EYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 260 ~~~l~~~~G~~i~~~~~V~~I~~~~-~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
+...+++.|++|++++.|++|..++ +.+.|.+.+++...+|.||++++...
T Consensus 299 l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~P 350 (558)
T PLN02546 299 VAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKP 350 (558)
T ss_pred HHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeecccc
Confidence 3344456799999999999998643 44566666664455899999998764
No 257
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.83 E-value=1.5e-05 Score=72.17 Aligned_cols=33 Identities=33% Similarity=0.399 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
||+|||||+||++||..|++ .|.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhc-----CCCeEEEEecccc
Confidence 79999999999999999999 9999999988754
No 258
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.82 E-value=0.00033 Score=69.63 Aligned_cols=61 Identities=10% Similarity=0.103 Sum_probs=43.6
Q ss_pred ceEeecchH-HHHHHHHHh----cCCeEEeCCceEEEEEeCC-EE-EEEEcc--C--ceEecCEEEEccCCC
Q 043512 249 LWAVEGGNW-QMAAGLINR----SDVALHLHEEIESISYLRE-YY-ELNSTK--G--NSYTCQITVVATPLD 309 (487)
Q Consensus 249 ~~~~~gG~~-~l~~~l~~~----~G~~i~~~~~V~~I~~~~~-~v-~V~~~~--G--~~~~ad~VV~a~~~~ 309 (487)
..+..+..+ .+...|.+. .+++|+.++.+.+|..+++ .+ +|.+.+ + .++.++.||+|++--
T Consensus 124 IlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~ 195 (518)
T COG0029 124 ILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGL 195 (518)
T ss_pred EEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCC
Confidence 445555544 466666553 3899999999999998887 55 665532 2 478999999999854
No 259
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.82 E-value=1.3e-05 Score=77.53 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=29.5
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNGV 60 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~~ 60 (487)
+|+||||||.+|+.+|.+|++ .| .+|+|+|+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~-----~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSE-----AGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTT-----STTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhh-----CCCCcEEEEEcccc
Confidence 599999999999999999999 87 79999999765
No 260
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.81 E-value=2.1e-05 Score=78.67 Aligned_cols=37 Identities=27% Similarity=0.333 Sum_probs=33.6
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
.||+|||||++|+.||+.|++ .|++|+|+|+++..|-
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr-----~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQ-----AGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHh-----CCCcEEEEeccccccC
Confidence 379999999999999999999 9999999999876543
No 261
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.80 E-value=3.2e-05 Score=76.76 Aligned_cols=42 Identities=26% Similarity=0.387 Sum_probs=38.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
..++|+|||||++|+++|..|++ .|++|+|+|+.+.+||...
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~-----~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLAC-----LGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-----CCCcEEEEeCCCCCCceee
Confidence 45799999999999999999999 9999999999999998764
No 262
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.80 E-value=0.00012 Score=80.27 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhcCCeEEeCCceEEEEEeC--CEEEEEEccCceEecCEEEEccCCCC
Q 043512 256 NWQMAAGLINRSDVALHLHEEIESISYLR--EYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 256 ~~~l~~~l~~~~G~~i~~~~~V~~I~~~~--~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
....+...+++.|++|++++.|++|..++ ....|.+.+|+.+.+|.||++++...
T Consensus 189 ~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rP 245 (847)
T PRK14989 189 GGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRP 245 (847)
T ss_pred HHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCccc
Confidence 34555666677899999999999997643 23467888999999999999999764
No 263
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.78 E-value=9.8e-05 Score=72.40 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=43.9
Q ss_pred HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCC
Q 043512 257 WQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLD 309 (487)
Q Consensus 257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~ 309 (487)
..+++.+.+ .+|++|+++|+|..|..+++.+ .|.+++|+.+.+|+||+|.+-.
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcc
Confidence 345555543 5699999999999999988764 8889999999999999998865
No 264
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.78 E-value=1e-05 Score=70.74 Aligned_cols=69 Identities=20% Similarity=0.280 Sum_probs=49.5
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecC--ChhHHHHHHHcCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPK--NYHTVNFTKLLNL 98 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~--~~~~~~~~~~lgl 98 (487)
..||+|||||-+||+|||..++.. ...+|.|+|++-.+||-++ +|++.|... ..+..-|++++|+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~r---PdlkvaIIE~SVaPGGGaW----------LGGQLFSAMvvRKPAhLFL~Eigv 142 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNR---PDLKVAIIESSVAPGGGAW----------LGGQLFSAMVVRKPAHLFLQEIGV 142 (328)
T ss_pred ccceEEECCCccccceeeeeeccC---CCceEEEEEeeecCCCccc----------ccchhhhhhhhcChHHHHHHHhCC
Confidence 358999999999999999999633 6789999999988888665 444443321 1222357777776
Q ss_pred CCCC
Q 043512 99 KPKD 102 (487)
Q Consensus 99 ~~~~ 102 (487)
.-++
T Consensus 143 pYed 146 (328)
T KOG2960|consen 143 PYED 146 (328)
T ss_pred Cccc
Confidence 5433
No 265
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.75 E-value=5.7e-05 Score=57.32 Aligned_cols=34 Identities=29% Similarity=0.466 Sum_probs=31.8
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
+|+|||||+.|+-+|..|++ .|.+|+|+|+++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~-----~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE-----LGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHH-----hCcEEEEEeccchh
Confidence 58999999999999999999 99999999998763
No 266
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.73 E-value=0.00038 Score=70.31 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=38.0
Q ss_pred HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
++.|++|+++++|++|.. ++.+.|.+.+|+++.+|.||++++...
T Consensus 197 ~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~p 241 (396)
T PRK09754 197 QQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISA 241 (396)
T ss_pred HHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCCh
Confidence 356899999999999976 556678888898999999999998754
No 267
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.72 E-value=3.4e-05 Score=79.38 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=34.5
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
+|+|||||++|++||..|++ .|.+|+|+|++ .+||.|-
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-----~g~~V~lie~~-~~GG~c~ 39 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-----NGKNVTLIDEA-DLGGTCL 39 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CCCcEEEEECC-cccccCC
Confidence 79999999999999999999 99999999996 4777654
No 268
>PRK13984 putative oxidoreductase; Provisional
Probab=97.71 E-value=5.6e-05 Score=80.63 Aligned_cols=43 Identities=33% Similarity=0.461 Sum_probs=39.5
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
...++|+|||||++|+++|..|++ .|++|+|+|+.+.+||...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~-----~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLAT-----MGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHH-----CCCeEEEEecCCCCCceEe
Confidence 456789999999999999999999 9999999999999998664
No 269
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.70 E-value=0.00047 Score=69.15 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=39.8
Q ss_pred HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
++.|++++++++|++|..+++.+.|.+.+|+++.+|.||+|++...
T Consensus 194 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 194 TEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred HhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCc
Confidence 4568899999999999887777788888998999999999998754
No 270
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.67 E-value=6.8e-05 Score=71.55 Aligned_cols=48 Identities=31% Similarity=0.387 Sum_probs=41.7
Q ss_pred CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEE
Q 043512 17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT 67 (487)
Q Consensus 17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s 67 (487)
.+...++|+|||+|+||..+|+.|.+.+ .+..|+|+|+.+.++|-.+.
T Consensus 16 ~qs~~p~vcIVGsGPAGfYtA~~LLk~~---~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 16 TQSSTPRVCIVGSGPAGFYTAQHLLKRH---PNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred hccCCceEEEECCCchHHHHHHHHHhcC---CCCeeEeeecCCcccceeee
Confidence 4555669999999999999999999843 67999999999999998774
No 271
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.67 E-value=4.9e-05 Score=78.66 Aligned_cols=37 Identities=24% Similarity=0.162 Sum_probs=35.3
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
+||+|||+|++|+++|+.|++ +|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~-----~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD-----AGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH-----CCCeEEEEeccCccCC
Confidence 599999999999999999999 9999999999998886
No 272
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.66 E-value=4.4e-05 Score=83.34 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=31.7
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCC--CCeEEEEecCCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERNGV 60 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~--G~~V~VlE~~~~ 60 (487)
++|+|||||++||++|..|++ . |++|+|+||+..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~-----~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKL-----LDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHH-----hCCCCeEEEEecCCC
Confidence 479999999999999999999 7 899999999875
No 273
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.64 E-value=5.7e-05 Score=78.11 Aligned_cols=52 Identities=8% Similarity=0.004 Sum_probs=39.5
Q ss_pred HHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccC---ceEecCEEEEccCCCC
Q 043512 259 MAAGLINRSDVALHLHEEIESISYLREYYELNSTKG---NSYTCQITVVATPLDE 310 (487)
Q Consensus 259 l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VV~a~~~~~ 310 (487)
.+...+++.|++|++++.|++|...++++.|+..+| +++.+|.||++++...
T Consensus 225 ~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~p 279 (484)
T TIGR01438 225 KVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDA 279 (484)
T ss_pred HHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCc
Confidence 334445567999999999999987666666665554 3799999999998753
No 274
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.64 E-value=6e-05 Score=77.73 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 258 QMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 258 ~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
..+...+++.|++++++++|++|..+++++.|.+.+|+++++|.||++++...
T Consensus 222 ~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~p 274 (466)
T PRK07845 222 EVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVP 274 (466)
T ss_pred HHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCc
Confidence 34445556679999999999999877777778777888999999999988754
No 275
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.61 E-value=0.00011 Score=72.05 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCeEEeCCceEEEEEeCC----EEEEEEc----cCceEecCEEEEccCC
Q 043512 257 WQMAAGLINRSDVALHLHEEIESISYLRE----YYELNST----KGNSYTCQITVVATPL 308 (487)
Q Consensus 257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~----~v~V~~~----~G~~~~ad~VV~a~~~ 308 (487)
.+.++-.+++++..++++++|++|....+ .+.|.+. +++++.|+.||++++.
T Consensus 98 ~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 98 NDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG 157 (341)
T ss_dssp HHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----
T ss_pred HHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence 34444455566656899999999998654 3688773 3468999999999983
No 276
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.00075 Score=67.17 Aligned_cols=41 Identities=29% Similarity=0.305 Sum_probs=33.5
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
+++|+|||+|++|+..|.+|.+... ....|.|+|+....|+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~--~~~~Isi~e~~~~~G~ 41 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPR--PSGLISIFEPRPNFGQ 41 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCC--CCCceEEeccccccCC
Confidence 3689999999999999999998552 1223999999988764
No 277
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.61 E-value=7.1e-05 Score=70.14 Aligned_cols=45 Identities=9% Similarity=-0.023 Sum_probs=37.0
Q ss_pred hcCCeEEeCCceEEEEEeCCEE-EEEEccCc--eEecCEEEEccCCCC
Q 043512 266 RSDVALHLHEEIESISYLREYY-ELNSTKGN--SYTCQITVVATPLDE 310 (487)
Q Consensus 266 ~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~--~~~ad~VV~a~~~~~ 310 (487)
..|+.+..+-+|.+....++++ .|-|.++. .++||..|+|++...
T Consensus 270 ~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsff 317 (421)
T COG3075 270 QLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFF 317 (421)
T ss_pred HcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccc
Confidence 4699999999999999999988 67777764 478899999888654
No 278
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.60 E-value=0.00077 Score=69.58 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=32.4
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
..+|+|||||..|+.+|..|++ .|.+|+|+|+.++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~-----~g~~Vtli~~~~~ 204 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFAS-----LGSKVTVIEMLDR 204 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHH-----cCCcEEEEEcCCC
Confidence 3689999999999999999999 9999999999765
No 279
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0023 Score=61.81 Aligned_cols=113 Identities=18% Similarity=0.218 Sum_probs=71.4
Q ss_pred hhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCcchHH---HHHhhhcC-CCC-ceEeecchHHHHHHHHHh---c
Q 043512 196 LTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLA---GAVSLAGS-GGG-LWAVEGGNWQMAAGLINR---S 267 (487)
Q Consensus 196 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~-~~g-~~~~~gG~~~l~~~l~~~---~ 267 (487)
...+++.+||+..++.+.+..-+..+..-..+.+...+.++. .++...+. +.. ..+|.-|-+.+++.+.+. .
T Consensus 220 ~~e~~F~EyL~~~rltp~lqs~vl~aIaM~~~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYGqGELpQcFCRlcAVf 299 (547)
T KOG4405|consen 220 FRERPFSEYLKTMRLTPKLQSIVLHAIAMLSESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYGQGELPQCFCRLCAVF 299 (547)
T ss_pred hhcCcHHHHHHhcCCChhhHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhccCCCcceeeccCCCcchHHHHHHHHHh
Confidence 446789999999999887664444333322222221122222 22222232 222 347888888888887664 4
Q ss_pred CCeEEeCCceEEEEEeCCEEE---EEEccCceEecCEEEEccCC
Q 043512 268 DVALHLHEEIESISYLREYYE---LNSTKGNSYTCQITVVATPL 308 (487)
Q Consensus 268 G~~i~~~~~V~~I~~~~~~v~---V~~~~G~~~~ad~VV~a~~~ 308 (487)
|+-.-++.+|+.|..+.+... +....|+++.++++|+.-..
T Consensus 300 GgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~~y 343 (547)
T KOG4405|consen 300 GGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVSPSY 343 (547)
T ss_pred cceEEeccchhheeecccccchhhhHhhhcchhcceeeeecCcc
Confidence 888889999999998765442 22356889999999988655
No 280
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.59 E-value=0.0008 Score=69.46 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=32.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
..+|+|||||..|+-+|..|++ .|.+|+++|+.+++
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~-----~g~~Vtli~~~~~~ 207 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYAS-----LGAEVTIVEALPRI 207 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHH-----cCCeEEEEEcCCCc
Confidence 3689999999999999999999 99999999998764
No 281
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.52 E-value=0.00011 Score=76.62 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=36.8
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
...++||+|||||.|||.||..+++ +|.+|+|+||....+|
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~-----~g~~V~l~~K~~~~rg 43 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAE-----AGLKVALLSKAPPKRG 43 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHh-----cCCcEEEEEccccCCC
Confidence 3457899999999999999999999 9999999999876654
No 282
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.49 E-value=0.00014 Score=69.52 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=39.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
..+||+|||+|++|-.||...++ .|.+.+.+|+++.+||-|-
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQ-----lGlkTacvEkr~~LGGTcL 79 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQ-----LGLKTACVEKRGTLGGTCL 79 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHH-----hcceeEEEeccCccCceee
Confidence 57999999999999999999999 9999999999999999775
No 283
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.46 E-value=0.0014 Score=67.06 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=32.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
..+|+|||||..|+.+|..|++ .|.+|+|+|+.+++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~-----~g~~Vtli~~~~~~ 192 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNK-----LGSKVTVLDAASTI 192 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHH-----cCCeEEEEecCCcc
Confidence 4579999999999999999999 99999999998764
No 284
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=0.00058 Score=68.63 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=30.5
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN 58 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~ 58 (487)
.+||||||||.||+-||+..++ -|.+++++--+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaAR-----mG~ktlLlT~~ 36 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAAR-----MGAKTLLLTLN 36 (621)
T ss_pred CCceEEECCCccchHHHHhhhc-----cCCeEEEEEcC
Confidence 4899999999999999999999 99999998654
No 285
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.44 E-value=0.0016 Score=67.21 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=32.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
..+|+|||||..|+-+|..|++ .|.+|+|+|+.+++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~-----~g~~Vtli~~~~~~ 210 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAA-----LGVKVTLINTRDRL 210 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHH-----cCCeEEEEecCCCc
Confidence 4689999999999999999999 99999999997653
No 286
>PRK02106 choline dehydrogenase; Validated
Probab=97.42 E-value=0.00017 Score=76.29 Aligned_cols=36 Identities=33% Similarity=0.431 Sum_probs=32.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
..+|+||||||.+|+.+|.+|++. +|++|+|||+.+
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~----~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSED----PDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhC----CCCeEEEecCCC
Confidence 458999999999999999999993 599999999975
No 287
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00016 Score=75.56 Aligned_cols=38 Identities=34% Similarity=0.446 Sum_probs=34.5
Q ss_pred CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
....++|+||||+|.+|.+.|.+|++ +|++|+|||+..
T Consensus 3 ~~~~~~D~vIVGsG~aG~~lA~rLs~-----~g~~VllLEaG~ 40 (542)
T COG2303 3 EMKMEYDYVIVGSGSAGSVLAARLSD-----AGLSVLVLEAGG 40 (542)
T ss_pred cccCCCCEEEECCCchhHHHHHHhcC-----CCCeEEEEeCCC
Confidence 34567999999999999999999998 999999999863
No 288
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.39 E-value=0.0016 Score=71.47 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=39.3
Q ss_pred HHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 264 INRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
+++.|++|++++.|++|..++....|++.+|+++.+|.||++++...
T Consensus 192 l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 192 LEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred HHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence 34668999999999999865555578888999999999999999764
No 289
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.34 E-value=0.00011 Score=67.67 Aligned_cols=47 Identities=28% Similarity=0.400 Sum_probs=35.8
Q ss_pred CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCCCccc
Q 043512 17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNGVVGG 63 (487)
Q Consensus 17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~~~GG 63 (487)
.....++|+||||||.|.++||+|+++..-.+| ..|+++|+....||
T Consensus 6 r~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 6 REGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred ccCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 344568999999999999999999993210011 89999999876655
No 290
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.34 E-value=0.0025 Score=65.37 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=32.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
..+|+|||+|..|+-+|..|++ .|.+|+|+|+.++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~-----~G~~Vtli~~~~~ 200 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRG-----LGVQVTLIYRGEL 200 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHH-----cCCeEEEEEeCCC
Confidence 3579999999999999999999 9999999998765
No 291
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.33 E-value=0.0028 Score=65.41 Aligned_cols=35 Identities=17% Similarity=0.383 Sum_probs=32.2
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
.+++|||+|..|+-.|..|++ .|.+|+++|+.+++
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~-----~g~~Vtli~~~~~~ 212 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTE-----LGVKVTLVSSRDRV 212 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHH-----cCCeEEEEEcCCcC
Confidence 579999999999999999999 99999999987653
No 292
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.31 E-value=0.00027 Score=72.31 Aligned_cols=38 Identities=24% Similarity=0.552 Sum_probs=33.1
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcc
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVG 62 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~G 62 (487)
++|+|||||++|++||..|+++. .+.+|+|+|+++.++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~---~~~~I~li~~~~~~~ 39 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLD---KESDIIIFEKDRDMS 39 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhC---CCCCEEEEECCCCcc
Confidence 58999999999999999999843 478999999987654
No 293
>PRK07846 mycothione reductase; Reviewed
Probab=97.31 E-value=0.00026 Score=72.68 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=38.2
Q ss_pred cCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 267 SDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 267 ~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
.|++++++++|++|..+++++.|.+.+|+++.+|.||++++...
T Consensus 219 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~p 262 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVP 262 (451)
T ss_pred cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCcc
Confidence 47999999999999877777778887888999999999998764
No 294
>PLN02507 glutathione reductase
Probab=97.30 E-value=0.0036 Score=65.06 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=32.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
..+|+|||||..|+-.|..|++ .|.+|+|+|+.++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~-----~G~~Vtli~~~~~ 237 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRG-----MGATVDLFFRKEL 237 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHH-----cCCeEEEEEecCC
Confidence 3589999999999999999999 9999999998764
No 295
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.29 E-value=0.00031 Score=72.14 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=38.1
Q ss_pred cCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 267 SDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 267 ~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
.|++++++++|++|..+++++.|.+.+|+++.+|.||++++...
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~p 265 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVP 265 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCc
Confidence 48999999999999887777777777888899999999998654
No 296
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.28 E-value=0.0003 Score=72.20 Aligned_cols=53 Identities=23% Similarity=0.312 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
.+.....+++.|++|+++++|++|..+++...+.+.++ ++.+|.||+|++...
T Consensus 194 ~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~d~vi~a~G~~p 246 (444)
T PRK09564 194 TDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKG-EYEADVVIVATGVKP 246 (444)
T ss_pred HHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCC-EEEcCEEEECcCCCc
Confidence 33444445667999999999999975444345666554 799999999999753
No 297
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.27 E-value=0.0032 Score=65.12 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=32.2
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
..+|+|||||.+|+-+|..|++ .|.+|+|+|+.++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~-----~g~~Vtli~~~~~ 214 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLAD-----FGVEVTVVEAADR 214 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-----cCCeEEEEEecCc
Confidence 3689999999999999999999 9999999998764
No 298
>PRK06370 mercuric reductase; Validated
Probab=97.27 E-value=0.0034 Score=64.78 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=32.3
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
..+|+|||||..|+-+|..|++ .|.+|+|+|+.++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~-----~G~~Vtli~~~~~ 205 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRR-----FGSEVTVIERGPR 205 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-----cCCeEEEEEcCCC
Confidence 4689999999999999999999 9999999998765
No 299
>PRK06116 glutathione reductase; Validated
Probab=97.26 E-value=0.0033 Score=64.61 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=32.2
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
..+|+|||+|..|+-+|..|++ .|.+|+++++.++
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~-----~g~~Vtlv~~~~~ 201 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNG-----LGSETHLFVRGDA 201 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHH-----cCCeEEEEecCCC
Confidence 4689999999999999999999 9999999998765
No 300
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.25 E-value=0.0038 Score=63.37 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=37.4
Q ss_pred cCCeEEeCCceEEEEEeCCEEEEEEccCc--eEecCEEEEccCCC
Q 043512 267 SDVALHLHEEIESISYLREYYELNSTKGN--SYTCQITVVATPLD 309 (487)
Q Consensus 267 ~G~~i~~~~~V~~I~~~~~~v~V~~~~G~--~~~ad~VV~a~~~~ 309 (487)
.|++++++++|++++..++++.|.+.+|+ ++++|.|++|++-.
T Consensus 227 ~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~ 271 (454)
T COG1249 227 GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRK 271 (454)
T ss_pred CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCc
Confidence 57899999999999988777888887775 68899999999965
No 301
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.22 E-value=0.00028 Score=74.16 Aligned_cols=45 Identities=9% Similarity=0.152 Sum_probs=34.9
Q ss_pred hcCCeEEeCCceEEEEEeCCEE-EEEEccC-c---eEecCEEEEccCCCC
Q 043512 266 RSDVALHLHEEIESISYLREYY-ELNSTKG-N---SYTCQITVVATPLDE 310 (487)
Q Consensus 266 ~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G-~---~~~ad~VV~a~~~~~ 310 (487)
+.+.+|+.+++|++|..+++++ +|++.++ . .+.++.||+|++...
T Consensus 206 r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~ 255 (532)
T TIGR01810 206 RPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAIN 255 (532)
T ss_pred CCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCC
Confidence 4579999999999999887765 6665433 2 358999999999854
No 302
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.22 E-value=0.0037 Score=64.23 Aligned_cols=46 Identities=9% Similarity=0.024 Sum_probs=37.0
Q ss_pred HhcCCeEEeCCceEEEEEeCCE-EEEEEccC-ceEecCEEEEccCCCC
Q 043512 265 NRSDVALHLHEEIESISYLREY-YELNSTKG-NSYTCQITVVATPLDE 310 (487)
Q Consensus 265 ~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G-~~~~ad~VV~a~~~~~ 310 (487)
++.|+++++++.|++|..++++ +.|.+.+| +.+.+|.||++++...
T Consensus 218 ~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~p 265 (450)
T TIGR01421 218 EKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKP 265 (450)
T ss_pred HHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCc
Confidence 3568899999999999876443 66777777 5799999999998764
No 303
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.20 E-value=0.0053 Score=63.41 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=36.1
Q ss_pred HhcCCeEEeCCceEEEEEeCCEEEEEEc--cC--ceEecCEEEEccCCCC
Q 043512 265 NRSDVALHLHEEIESISYLREYYELNST--KG--NSYTCQITVVATPLDE 310 (487)
Q Consensus 265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~--~G--~~~~ad~VV~a~~~~~ 310 (487)
++.|++|+++++|++|..+++++.+.+. +| +++.+|.||++++...
T Consensus 224 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~p 273 (466)
T PRK07818 224 KKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAP 273 (466)
T ss_pred HHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCccc
Confidence 3568999999999999877666655543 56 3699999999998753
No 304
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.12 E-value=0.0053 Score=63.56 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=35.8
Q ss_pred hcCCeEEeCCceEEEEEeCCEEEEEEcc--C--ceEecCEEEEccCCCC
Q 043512 266 RSDVALHLHEEIESISYLREYYELNSTK--G--NSYTCQITVVATPLDE 310 (487)
Q Consensus 266 ~~G~~i~~~~~V~~I~~~~~~v~V~~~~--G--~~~~ad~VV~a~~~~~ 310 (487)
+.|++|+++++|++|..+++++.|...+ | +.+.+|.||++++...
T Consensus 236 ~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p 284 (475)
T PRK06327 236 KQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVP 284 (475)
T ss_pred HcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCcc
Confidence 4588999999999998877777666543 3 4699999999998764
No 305
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.04 E-value=0.00072 Score=68.28 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=31.5
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCCCc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNGVV 61 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~~~ 61 (487)
+++|+|||||++|++||..|++ .|+ +|+|+++.+..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~-----~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQ-----QGFTGELHLFSDERHL 40 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHh-----hCCCCCEEEeCCCCCC
Confidence 4689999999999999999999 665 89999997654
No 306
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.95 E-value=0.011 Score=60.65 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=37.3
Q ss_pred HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
++.|++++++++|++|..+++++.|.+.+| ++.+|.||++++...
T Consensus 210 ~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~p 254 (441)
T PRK08010 210 RDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQP 254 (441)
T ss_pred HhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCc
Confidence 456899999999999988777777777666 689999999988764
No 307
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=96.94 E-value=0.0053 Score=58.83 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=37.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEE
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT 67 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s 67 (487)
.+.+-|||+|+|||++|.+|-+..+ -.|.++-|+|.-+..||..-.
T Consensus 22 qKsaY~vG~GlAsLA~AvfLIRDg~-m~G~~IHilEelpl~GGSlDG 67 (587)
T COG4716 22 QKSAYIVGGGLASLAAAVFLIRDGQ-MDGKRIHILEELPLAGGSLDG 67 (587)
T ss_pred cceeEEEccchHhhhheeEEEeccc-cCCceeEeeecCcccCCCCCC
Confidence 4678999999999999999987321 168899999999888987643
No 308
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.89 E-value=0.0014 Score=65.80 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=31.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
+++|+|||||+||+++|..|++.. ...+|+|+++.+.
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~---~~~~Itvi~~~~~ 38 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQD---AHIPITLITADSG 38 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhC---cCCCEEEEeCCCC
Confidence 468999999999999999999843 5679999998763
No 309
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.87 E-value=0.0013 Score=67.08 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCC
Q 043512 257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLD 309 (487)
Q Consensus 257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~ 309 (487)
...++..+++.|++|+++++|++|.. + .|.+.+|+++.+|.||++++..
T Consensus 231 ~~~~~~~L~~~gV~v~~~~~v~~v~~--~--~v~~~~g~~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 231 RKYGQRRLRRLGVDIRTKTAVKEVLD--K--EVVLKDGEVIPTGLVVWSTGVG 279 (424)
T ss_pred HHHHHHHHHHCCCEEEeCCeEEEEeC--C--EEEECCCCEEEccEEEEccCCC
Confidence 34444455677999999999999963 3 3567789899999999998854
No 310
>PLN02785 Protein HOTHEAD
Probab=96.86 E-value=0.0013 Score=69.40 Aligned_cols=35 Identities=31% Similarity=0.497 Sum_probs=31.6
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
...+|+||||||.+|+.+|.+|++ . .+|+|+|+..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-----~-~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-----N-FSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-----C-CcEEEEecCC
Confidence 446999999999999999999998 5 8999999964
No 311
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.83 E-value=0.014 Score=60.44 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=31.5
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
..+|+|||||..|+-.|..++.+.. .|.+|+|+|+.+++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~--~G~~Vtli~~~~~i 225 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKP--RGGKVTLCYRNNMI 225 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhcc--CCCeEEEEecCCcc
Confidence 4679999999999999987765221 59999999988763
No 312
>PRK14727 putative mercuric reductase; Provisional
Probab=96.83 E-value=0.02 Score=59.43 Aligned_cols=45 Identities=7% Similarity=0.127 Sum_probs=37.8
Q ss_pred HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
++.|++|+++++|++|..+++++.|.+.++ ++.+|.||++++...
T Consensus 239 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~p 283 (479)
T PRK14727 239 EKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHA 283 (479)
T ss_pred HhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCC
Confidence 356889999999999988777777777666 689999999999875
No 313
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.79 E-value=0.0021 Score=61.00 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=41.1
Q ss_pred CCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 15 QPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 15 ~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
+......+|..|||||-+|+++|++.++ .|.+|.|+|..-++||-|-
T Consensus 14 ~a~~~k~fDylvIGgGSGGvasARrAa~-----~GAkv~l~E~~f~lGGTCV 60 (478)
T KOG0405|consen 14 MAADVKDFDYLVIGGGSGGVASARRAAS-----HGAKVALCELPFGLGGTCV 60 (478)
T ss_pred ccccccccceEEEcCCcchhHHhHHHHh-----cCceEEEEecCCCcCceEE
Confidence 3444457899999999999999999999 9999999999878888774
No 314
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.74 E-value=0.0017 Score=65.73 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=37.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM 65 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~ 65 (487)
..+|+|||+|..|+-+|..|++ +|++|+++|+.+++||+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~-----~G~~v~l~e~~~~~~~~~ 175 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAK-----RGKKVTLIEAADRLGGQL 175 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHH-----cCCeEEEEEcccccchhh
Confidence 4789999999999999999999 999999999999987644
No 315
>PRK14694 putative mercuric reductase; Provisional
Probab=96.72 E-value=0.022 Score=58.84 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=36.7
Q ss_pred HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
++.|++++++++|++|..+++.+.+.+.++ ++.+|.||++++...
T Consensus 229 ~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~p 273 (468)
T PRK14694 229 RREGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTP 273 (468)
T ss_pred HhCCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCC
Confidence 355889999999999987776666766555 799999999998764
No 316
>PRK13748 putative mercuric reductase; Provisional
Probab=96.66 E-value=0.024 Score=60.09 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=37.4
Q ss_pred HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
++.|++|+++++|++|..+++.+.+.+.++ ++.+|.||++++...
T Consensus 321 ~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~p 365 (561)
T PRK13748 321 RAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAP 365 (561)
T ss_pred HHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCc
Confidence 356889999999999987777777777666 799999999999764
No 317
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.65 E-value=0.014 Score=60.80 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=29.8
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN 58 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~ 58 (487)
.+|+|||||..|+-.|..|++ .|.+|+|+++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~-----~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNE-----LGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHH-----cCCcEEEEEcC
Confidence 479999999999999999999 99999999863
No 318
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.002 Score=60.63 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=32.1
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
...|.|||||++|.-|||.+++ +|.+|.++|-++.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~-----~Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAK-----RGVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHH-----cCCcEEEEEcccc
Confidence 3469999999999999999999 9999999998764
No 319
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.53 E-value=0.0056 Score=60.15 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=50.6
Q ss_pred CceEeecch---HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCCCC
Q 043512 248 GLWAVEGGN---WQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDELN 312 (487)
Q Consensus 248 g~~~~~gG~---~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~~~ 312 (487)
|.|.+.+|. .+++..|++ +.|++|+.+++|++|..+++++ .|.+.+| ++.||.||+|++.+...
T Consensus 125 g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 125 AVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE 195 (337)
T ss_pred EEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence 455555553 566666655 4599999999999999888876 6788777 89999999999998754
No 320
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.49 E-value=0.0028 Score=63.23 Aligned_cols=51 Identities=14% Similarity=0.136 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512 256 NWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310 (487)
Q Consensus 256 ~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~ 310 (487)
........+++.|++++++++|++|.. + .|.+.+|+++.+|.||++++...
T Consensus 193 ~~~~~~~~l~~~gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 193 VRRLVLRLLARRGIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCCCh
Confidence 344555666778999999999999853 2 46677888999999999998653
No 321
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.48 E-value=0.039 Score=57.19 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=29.7
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN 58 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~ 58 (487)
.+++|||||..|+-+|..|++ .|.+|+|+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~-----~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAG-----IGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----hCCcEEEEEec
Confidence 579999999999999999999 99999999863
No 322
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0041 Score=58.73 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=33.3
Q ss_pred CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEec
Q 043512 16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFER 57 (487)
Q Consensus 16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~ 57 (487)
...+-.+|.||||||-+||+||...+. -|.+|.++|-
T Consensus 14 ~~~sydyDLIviGgGSgGLacaKeAa~-----~G~kV~~lDf 50 (503)
T KOG4716|consen 14 LFSSYDYDLIVIGGGSGGLACAKEAAD-----LGAKVACLDF 50 (503)
T ss_pred hcccCCccEEEEcCCcchhhHHHHHHh-----cCCcEEEEee
Confidence 345567899999999999999999999 9999999986
No 323
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.36 E-value=0.0044 Score=53.66 Aligned_cols=32 Identities=25% Similarity=0.493 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
+|+|||||-.|.+.|..|++ +|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~-----~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD-----NGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----CTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHH-----cCCEEEEEeccH
Confidence 58999999999999999999 999999998863
No 324
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.26 E-value=0.005 Score=63.58 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=34.4
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
....+|.||||||-||+..|.+|++. ...+|+|+|+...+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn----~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSEN----PNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccC----CCceEEEEecCCCC
Confidence 44579999999999999999999983 45899999997653
No 325
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=95.94 E-value=0.011 Score=57.50 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=33.2
Q ss_pred CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
+.+..+||+|||||+.|++.|..|.....- +.++|+++|..+
T Consensus 32 ~~~~~~dVvIvGgGpvg~aLAa~l~snp~~-~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 32 TDTAKYDVVIVGGGPVGLALAAALGSNPPF-QDKKVLLLDAGD 73 (481)
T ss_pred CCcccCCEEEECCchHHHHHHHHhccCCcc-chheeeEEeccc
Confidence 344478999999999999999999862110 468999999974
No 326
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.90 E-value=0.018 Score=57.02 Aligned_cols=61 Identities=11% Similarity=0.070 Sum_probs=46.3
Q ss_pred CCceEe-ecchHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEccC-ceEecCEEEEccCCC
Q 043512 247 GGLWAV-EGGNWQMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKG-NSYTCQITVVATPLD 309 (487)
Q Consensus 247 ~g~~~~-~gG~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~~G-~~~~ad~VV~a~~~~ 309 (487)
.|..|| ..-.+.++++|.. +.|++|+++++|++| +++++.|.+.++ ..++||+||+|++-.
T Consensus 75 ~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~ 140 (376)
T TIGR03862 75 SGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGA 140 (376)
T ss_pred CCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCc
Confidence 455566 4456778888865 469999999999999 445577776543 469999999999974
No 327
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.89 E-value=0.011 Score=52.32 Aligned_cols=33 Identities=21% Similarity=0.447 Sum_probs=28.6
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
+|+|||||..|..-|..++. .|++|+++|.+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~-----~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR-----AGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH-----TTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHh-----CCCcEEEEECChH
Confidence 48999999999999999999 9999999998653
No 328
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.89 E-value=0.0037 Score=62.68 Aligned_cols=40 Identities=25% Similarity=0.250 Sum_probs=36.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM 65 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~ 65 (487)
.+||+|||||..|.-||.-.+- +|.+|.++|+.|..-|-.
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~T-----RGLktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAAT-----RGLKTALVEAGDFASGTS 106 (680)
T ss_pred cccEEEECCCccCcceeehhhc-----ccceeEEEecccccCCcc
Confidence 4899999999999999999999 999999999999755543
No 329
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.88 E-value=0.0085 Score=65.83 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=31.7
Q ss_pred EEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcc
Q 043512 24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVG 62 (487)
Q Consensus 24 VvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~G 62 (487)
|+|||||++|+++|..|+++.. .+++|+|+|+.++++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~--~~~~Itvi~~e~~~~ 37 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNR--HMFEITIFGEEPHPN 37 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCC--CCCeEEEEeCCCCCC
Confidence 6899999999999999988432 468999999998865
No 330
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.69 E-value=0.015 Score=60.44 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=31.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
.++|+|||+|.+|+++|..|++ .|++|+++|+++.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~-----~G~~V~~~d~~~~ 50 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLE-----LGARVTVVDDGDD 50 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCch
Confidence 4689999999999999999999 9999999998653
No 331
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.61 E-value=0.015 Score=51.80 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=27.3
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
++|.|||.|..||.+|..|++ .|++|+.+|.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~-----~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAE-----KGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHH-----TTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHh-----CCCEEEEEeCChH
Confidence 579999999999999999999 9999999998753
No 332
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.0086 Score=56.90 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=34.1
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~ 66 (487)
....+||+|||||++|.+||.+.++ +|.+.-|+- +|.||..-
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaAR-----KGiRTGl~a--erfGGQvl 249 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAAR-----KGIRTGLVA--ERFGGQVL 249 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHh-----hcchhhhhh--hhhCCeec
Confidence 3456899999999999999999999 999887653 35777543
No 333
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.50 E-value=0.012 Score=54.77 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=28.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCC--CCCCeEEEEec
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSK--NWHPRILMFER 57 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~--~~G~~V~VlE~ 57 (487)
+.++|+|||+|+.||++|..+.++... ..-.+|+|++-
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D 41 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD 41 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence 467999999999999999888873210 03478888864
No 334
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.47 E-value=0.019 Score=55.75 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=31.0
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
++|.|||+|..|.+.|..|++ +|++|++++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~-----~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFAR-----AGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHH-----CCCeeEEEeCCH
Confidence 479999999999999999999 999999999875
No 335
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.35 E-value=0.02 Score=59.03 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=31.3
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
+|.|||+|.+|+++|..|++ .|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~-----~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKA-----QGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHH-----CCCEEEEECCCCch
Confidence 58999999999999999999 99999999987653
No 336
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.28 E-value=0.03 Score=54.37 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=31.4
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
-++|+|||+|..|..-|..++. .|++|+++|..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~-----aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALA-----HGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHh-----CCCeEEEEeCCH
Confidence 3579999999999999999999 999999999864
No 337
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.14 E-value=0.016 Score=53.08 Aligned_cols=69 Identities=22% Similarity=0.227 Sum_probs=44.0
Q ss_pred EEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeC--CeEecccceeEecCChhHHHHHHH
Q 043512 24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS--GQTFEAGASILHPKNYHTVNFTKL 95 (487)
Q Consensus 24 VvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~--g~~~d~G~~~~~~~~~~~~~~~~~ 95 (487)
.+||||||||.+||-.|+.++ +..+|+++-+++.+-.-..-...+ +..||+--+-.++..+..+.+++.
T Consensus 2 fivvgggiagvscaeqla~~~---psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~ 72 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLE---PSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND 72 (334)
T ss_pred eEEEcCccccccHHHHHHhhC---CCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHh
Confidence 689999999999999999977 778999998876542211111111 234666555444444333355554
No 338
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.07 E-value=0.036 Score=47.45 Aligned_cols=31 Identities=32% Similarity=0.349 Sum_probs=28.9
Q ss_pred EEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 24 VvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
|+|||+|..|+..|++|++ .|++|+++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~-----~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-----AGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-----TTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHH-----CCCceEEEEccc
Confidence 7899999999999999999 999999998754
No 339
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.03 E-value=0.032 Score=53.51 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=31.5
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
.+|+|||+|..|..-|..|++ .|++|+++|.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~-----~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR-----AGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh-----CCCEEEEEECCHH
Confidence 479999999999999999999 9999999998754
No 340
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.00 E-value=0.03 Score=57.76 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=32.3
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
..+|+|||+|..|+-+|..|++ .|.+|+|+|+.++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~-----~g~~Vtli~~~~~ 200 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFAR-----LGSEVTILQRSDR 200 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHH-----cCCcEEEEEcCCc
Confidence 3689999999999999999999 9999999998765
No 341
>PRK07846 mycothione reductase; Reviewed
Probab=94.99 E-value=0.034 Score=57.11 Aligned_cols=36 Identities=22% Similarity=0.469 Sum_probs=33.2
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
..+|+|||||..|+-+|..|++ .|.+|+++|+.+++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~-----~G~~Vtli~~~~~l 201 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSA-----LGVRVTVVNRSGRL 201 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHH-----cCCeEEEEEcCCcc
Confidence 3689999999999999999999 99999999998764
No 342
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=94.97 E-value=0.035 Score=57.22 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=32.1
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
..+|+|||||..|+-+|..|++ .|.+|+|+|+.++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~-----~g~~Vtli~~~~~ 204 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSR-----LGTKVTIVEMAPQ 204 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-----cCCeEEEEecCCC
Confidence 3689999999999999999999 9999999998765
No 343
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.91 E-value=0.037 Score=57.13 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=32.4
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
..+|+|||||..|+-.|..|++ .|.+|+|+|+.++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~-----~G~~Vtlie~~~~ 208 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRR-----LGAQVTVVEYLDR 208 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHH-----cCCeEEEEeCCCC
Confidence 4689999999999999999999 9999999998765
No 344
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.90 E-value=0.035 Score=57.37 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=32.1
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
.+|+|||||..|+-.|..|++ .|.+|+|+|+.++
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~-----~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHR-----LGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHH-----cCCCEEEEecCCC
Confidence 689999999999999999999 9999999999865
No 345
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.83 E-value=0.035 Score=53.28 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=30.7
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
++|+|||+|..|.+.|..|++ +|++|++++.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~-----~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF-----HGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh-----cCCeEEEEeCCH
Confidence 579999999999999999999 999999999864
No 346
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.70 E-value=0.05 Score=52.98 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=31.2
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.++|+|||+|..|.+.|..|++ .|++|+++.++.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~-----~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLAR-----AGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHH-----CCCeEEEEEeCC
Confidence 4689999999999999999999 999999998853
No 347
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.68 E-value=0.041 Score=56.30 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=32.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
..+|+|||||..|+-.|..|++ .|.+|+|+|+.+++
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~-----~g~~Vtli~~~~~l 183 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYE-----RGLHPTLIHRSDKI 183 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCCcEEEEeccccc
Confidence 3689999999999999999999 99999999998764
No 348
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.056 Score=48.34 Aligned_cols=42 Identities=33% Similarity=0.514 Sum_probs=35.5
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC---C-CccceeEEE
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN---G-VVGGRMATV 68 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~---~-~~GGr~~s~ 68 (487)
-+|+|||+|+++-+||.++++ +..+-++||.- + .+||...|.
T Consensus 9 e~v~IiGSGPAa~tAAiYaar-----aelkPllfEG~~~~~i~pGGQLtTT 54 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAAR-----AELKPLLFEGMMANGIAPGGQLTTT 54 (322)
T ss_pred eeEEEEccCchHHHHHHHHhh-----cccCceEEeeeeccCcCCCceeeee
Confidence 479999999999999999999 99999999962 2 347777664
No 349
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=94.65 E-value=0.046 Score=56.37 Aligned_cols=36 Identities=25% Similarity=0.505 Sum_probs=32.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
..+|+|||+|..|+-.|..|++ .|.+|+|+|+.+++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~-----~g~~Vtli~~~~~~ 204 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSR-----LGVKVTVFERGDRI 204 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHH-----cCCcEEEEecCCCc
Confidence 4689999999999999999999 99999999998653
No 350
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.65 E-value=0.046 Score=55.78 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=32.1
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
..+|+|||||..|+-+|..|++ .|.+|+++++.+.
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~-----~g~~Vtli~~~~~ 171 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRE-----RGKNVTLIHRSER 171 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHh-----CCCcEEEEECCcc
Confidence 3689999999999999999999 9999999998764
No 351
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.61 E-value=0.044 Score=52.67 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=30.7
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.+|+|||+|..|.+.|..|++ +|++|+++++++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~-----~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAV-----SGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHh-----CCCcEEEEeCCH
Confidence 469999999999999999999 999999999864
No 352
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.54 E-value=0.05 Score=52.74 Aligned_cols=33 Identities=27% Similarity=0.211 Sum_probs=30.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN 58 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~ 58 (487)
.++|+|||+|..|...|++|++ .|.+|+++.|.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~-----~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLAR-----AGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHh-----CCCCeEEEEec
Confidence 4689999999999999999999 99999999985
No 353
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.49 E-value=0.048 Score=50.21 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=45.5
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCCCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKPK 101 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~~ 101 (487)
++++|||+|--|.+.|..|.+ .|++|+++|+.+.. +..+. .-+.+.+.+...... .+.+++.|+...
T Consensus 1 m~iiIiG~G~vG~~va~~L~~-----~g~~Vv~Id~d~~~---~~~~~----~~~~~~~~v~gd~t~-~~~L~~agi~~a 67 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE-----EGHNVVLIDRDEER---VEEFL----ADELDTHVVIGDATD-EDVLEEAGIDDA 67 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh-----CCCceEEEEcCHHH---HHHHh----hhhcceEEEEecCCC-HHHHHhcCCCcC
Confidence 579999999999999999999 99999999997531 11000 012344444432221 267788887654
Q ss_pred C
Q 043512 102 D 102 (487)
Q Consensus 102 ~ 102 (487)
+
T Consensus 68 D 68 (225)
T COG0569 68 D 68 (225)
T ss_pred C
Confidence 3
No 354
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.47 E-value=0.057 Score=52.02 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=30.9
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.+|+|||+|..|.+.|..|++ +|++|++++++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~-----~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCAL-----AGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHH-----CCCeEEEEeCCH
Confidence 579999999999999999999 999999999864
No 355
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.45 E-value=0.051 Score=53.63 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=30.7
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN 58 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~ 58 (487)
.++|.|||+|..|.+.|..|++ +|++|++++++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~-----~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAA-----AGADVTLIGRA 34 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHh-----cCCcEEEEecH
Confidence 4679999999999999999999 99999999874
No 356
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=94.39 E-value=0.055 Score=55.60 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=33.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
..+++|||||..|+-.|..|++ .|.+|+++|+.+++
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~-----~G~~Vtli~~~~~l 204 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSA-----LGTRVTIVNRSTKL 204 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHh-----CCCcEEEEEccCcc
Confidence 3689999999999999999999 99999999998764
No 357
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.31 E-value=0.073 Score=46.62 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=29.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
...+|+|+|+|.+|..||..|.+ .|.+|+++|.+.
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~-----lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKG-----LGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHH-----TT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhH-----CCCEEEeccCCH
Confidence 34789999999999999999999 999999999753
No 358
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.26 E-value=0.063 Score=55.19 Aligned_cols=34 Identities=24% Similarity=0.617 Sum_probs=31.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.++|+|||+|..|+++|..|++ .|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~-----~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKK-----LGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCc
Confidence 5789999999999999999999 999999999864
No 359
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.19 E-value=0.057 Score=51.98 Aligned_cols=33 Identities=15% Similarity=0.357 Sum_probs=30.9
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.+|.|||+|..|.+.|..|++ +|++|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~-----~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR-----TGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh-----cCCeEEEEeCCH
Confidence 569999999999999999999 999999999865
No 360
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.18 E-value=0.062 Score=51.98 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=29.8
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN 58 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~ 58 (487)
++|+|||+|..|...|..|++ .|++|+++.++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~-----~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQ-----AGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCCeEEEEECC
Confidence 369999999999999999999 99999999984
No 361
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.16 E-value=0.079 Score=51.43 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=32.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
+.++|.|||+|..|.+.|..|++ .|++|+++.++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~-----~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASA-----NGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHH-----CCCEEEEEeCCC
Confidence 45679999999999999999999 999999999864
No 362
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.09 E-value=0.09 Score=45.86 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=30.6
Q ss_pred CCCcEEEECCCh-hHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512 20 QEPTVCIIGSGI-GGSSLAHFLRQYSSKNWHPRILMFERN 58 (487)
Q Consensus 20 ~~~dVvIIGaGi-aGLsaA~~L~~~~~~~~G~~V~VlE~~ 58 (487)
..++|+|||+|- +|..+|..|.+ .|.+|+|..++
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~-----~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLN-----RNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh-----CCCEEEEEECC
Confidence 468899999995 79999999999 99999999975
No 363
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.07 E-value=0.075 Score=50.03 Aligned_cols=45 Identities=22% Similarity=0.443 Sum_probs=38.3
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC--------CCccceeEEEee
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN--------GVVGGRMATVTI 70 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~--------~~~GGr~~s~~~ 70 (487)
..+|+|||+|..|.-+|..+.. -|.+|+++|.+ +..|||..+...
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~g-----lgA~Vtild~n~~rl~~ldd~f~~rv~~~~s 220 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIG-----LGADVTILDLNIDRLRQLDDLFGGRVHTLYS 220 (371)
T ss_pred CccEEEECCccccchHHHHHhc-----cCCeeEEEecCHHHHhhhhHhhCceeEEEEc
Confidence 4589999999999999999999 89999999998 345888776543
No 364
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.04 E-value=0.066 Score=51.88 Aligned_cols=31 Identities=16% Similarity=0.316 Sum_probs=29.2
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEec
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFER 57 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~ 57 (487)
++|+|||+|..|.+.|..|++ .|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~-----~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLE-----AGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHH-----CCCceEEEec
Confidence 369999999999999999999 9999999987
No 365
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.01 E-value=0.073 Score=55.72 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=31.7
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
..+|+|||||..|+-+|..|++ .|.+|+|+|+.+.
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~-----~g~~Vtli~~~~~ 386 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAG-----IVRHVTVLEFADE 386 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHh-----cCcEEEEEEeCCc
Confidence 4689999999999999999999 8999999987653
No 366
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.00 E-value=0.06 Score=53.51 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=31.0
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN 58 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~ 58 (487)
...+||||||||.||.-||...++ -|.+.+++-.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR-----~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAAR-----LGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHh-----cCCceEEeecc
Confidence 557899999999999999999999 89888888653
No 367
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=93.98 E-value=0.077 Score=54.45 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=32.7
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
..+|+|||||..|+-+|..|++ .|.+|+++++.+++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~-----~g~~Vtli~~~~~~ 184 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKH-----LGKNVRIIQLEDRI 184 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----cCCcEEEEeCCccc
Confidence 4689999999999999999999 99999999987754
No 368
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.89 E-value=0.093 Score=51.46 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=31.3
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.++|.|||+|..|.+.|..|++ .|++|++++++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~-----~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAAS-----KGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHH-----CCCeEEEEeCCH
Confidence 4579999999999999999999 999999999853
No 369
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=93.87 E-value=0.081 Score=56.64 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=32.4
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
..+|+|||||..|+-.|..|++ .|.+|+|+|+.++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~-----~G~eVTLIe~~~~ 346 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTA-----LGSEVVSFEYSPQ 346 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHh-----CCCeEEEEeccCc
Confidence 3579999999999999999999 9999999999876
No 370
>PTZ00058 glutathione reductase; Provisional
Probab=93.82 E-value=0.079 Score=55.76 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=32.2
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
..+|+|||||..|+-.|..|++ .|.+|+|+|+.++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~-----~G~~Vtli~~~~~ 271 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNR-----LGAESYIFARGNR 271 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHH-----cCCcEEEEEeccc
Confidence 4689999999999999999999 9999999998754
No 371
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.81 E-value=0.11 Score=47.17 Aligned_cols=34 Identities=15% Similarity=0.147 Sum_probs=31.1
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.++|+|||||-.|...+..|.+ .|.+|+|+....
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~-----~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLK-----AGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHH-----CCCEEEEEcCCC
Confidence 4689999999999999999999 999999997753
No 372
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.79 E-value=0.12 Score=43.46 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=30.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCe-EEEEecC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPR-ILMFERN 58 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~-V~VlE~~ 58 (487)
...+|+|||||-+|-++++.|++ .|.+ |+|+-|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~-----~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAA-----LGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHH-----TTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHH-----cCCCEEEEEECC
Confidence 46789999999999999999999 8976 9999875
No 373
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=93.79 E-value=0.1 Score=50.34 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=30.8
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.+|.|||+|..|.+.|..|++ .|++|+++|++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~-----~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAA-----AGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCCeEEEEeCCH
Confidence 569999999999999999999 999999999864
No 374
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=93.69 E-value=0.084 Score=47.26 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=33.3
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
..+.+.|.|||||..|.-.|...+. .|+.|.+++++.
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~-----sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAAT-----SGLNVWLVDANE 44 (298)
T ss_pred cccccceEEEcccccchhHHHHHHh-----cCCceEEecCCH
Confidence 4456789999999999999999999 999999999874
No 375
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.62 E-value=0.091 Score=50.30 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=30.6
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.+|+|||+|..|.+.|..|++ .|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~-----~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAV-----AGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHH-----CCCceEEEeCCH
Confidence 469999999999999999999 999999999764
No 376
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.58 E-value=0.12 Score=53.83 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=32.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
.-.+|.|||+|..|...|..|++ +|++|+++|++..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~-----aG~~V~l~D~~~e 41 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQ-----AGHTVLLYDARAG 41 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-----CCCeEEEEeCCHH
Confidence 34679999999999999999999 9999999998654
No 377
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=93.55 E-value=0.27 Score=51.52 Aligned_cols=57 Identities=7% Similarity=0.092 Sum_probs=43.2
Q ss_pred HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEc---cC--ceEecCEEEEccCCCCCCe
Q 043512 257 WQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNST---KG--NSYTCQITVVATPLDELNL 313 (487)
Q Consensus 257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~---~G--~~~~ad~VV~a~~~~~~~~ 313 (487)
..++.++++ +.|++|+.+++|++|..+++++ +|++. +| ..+.|+.||.|+++|...+
T Consensus 128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l 193 (516)
T TIGR03377 128 FRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRI 193 (516)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHH
Confidence 455555544 4699999999999999888765 45542 34 3689999999999997543
No 378
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.55 E-value=0.12 Score=50.35 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=31.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
-++|.|||+|..|.+.|..|++ .|++|++++++.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~-----~g~~V~~~d~~~ 37 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFAR-----KGLQVVLIDVME 37 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHh-----CCCeEEEEECCH
Confidence 3579999999999999999999 999999999764
No 379
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.52 E-value=0.72 Score=45.39 Aligned_cols=38 Identities=26% Similarity=0.170 Sum_probs=32.2
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
....|+|.||-|+.-|+.|..|... .+.+++.+||...
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~----~~~~~lFLerkp~ 40 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEH----SGLKSLFLERKPD 40 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccc----cCcceEEEecCCC
Confidence 3568999999999999999999983 3488999999753
No 380
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.43 E-value=0.074 Score=42.32 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=30.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN 58 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~ 58 (487)
..++|+|||||-.|..-+..|.+ .|.+|+|+...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~-----~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLE-----AGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCC-----CTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-----CCCEEEEECCc
Confidence 45789999999999999999999 99999999876
No 381
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.35 E-value=1 Score=47.74 Aligned_cols=54 Identities=11% Similarity=-0.008 Sum_probs=40.2
Q ss_pred HHHHHHHHH---hcCCeEEeCCceEEEEEe-CCEE-EEEE---ccCc--eEecCEEEEccCCCC
Q 043512 257 WQMAAGLIN---RSDVALHLHEEIESISYL-REYY-ELNS---TKGN--SYTCQITVVATPLDE 310 (487)
Q Consensus 257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~-~~~v-~V~~---~~G~--~~~ad~VV~a~~~~~ 310 (487)
..+...|.+ +.|++|+.++.++++..+ ++++ +|.. .+|+ .+.|+.||+|++-..
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 456666655 358999999999999985 5555 5543 3564 578999999999764
No 382
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.34 E-value=0.12 Score=50.15 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=29.8
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCC--CeEEEEecCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWH--PRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G--~~V~VlE~~~ 59 (487)
++|.|||+|..|.++|+.|+. .| .+|.++|++.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~-----~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLL-----RGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHH-----cCCCCEEEEEECCc
Confidence 369999999999999999999 88 5899999864
No 383
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=93.32 E-value=0.11 Score=57.56 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=32.6
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
.+++|||||..|+-+|..|++ .|.+|+|+|+.+++
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~-----~G~~VtvVe~~~~l 180 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKN-----LGVETHVIEFAPML 180 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHH-----cCCeEEEEeccccc
Confidence 579999999999999999999 99999999998764
No 384
>PRK10262 thioredoxin reductase; Provisional
Probab=93.31 E-value=0.12 Score=50.37 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=31.5
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.++|+|||+|..|+-+|..|++ .|.+|+++++.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~-----~~~~Vtlv~~~~ 179 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSN-----IASEVHLIHRRD 179 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----hCCEEEEEEECC
Confidence 4689999999999999999999 999999999864
No 385
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.25 E-value=0.15 Score=46.10 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=30.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN 58 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~ 58 (487)
..++|+|||||-.|...|..|.+ .|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~-----~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLK-----YGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCCeEEEEcCC
Confidence 35789999999999999999999 99999999864
No 386
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.23 E-value=0.12 Score=54.16 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=31.7
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
.++|+|||||..|+-+|..|++ .|.+|+|+++.+.
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~-----~~~~Vtlv~~~~~ 385 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAG-----IVKHVTVLEFAPE 385 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----cCCEEEEEEECcc
Confidence 4689999999999999999999 9999999987653
No 387
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=93.22 E-value=0.13 Score=52.88 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=31.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
..++|+|||||..|+-+|..|++ .|.+|+|+++.+
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~-----~G~~Vtlv~~~~ 305 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALR-----LGAEVHCLYRRT 305 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-----cCCEEEEEeecC
Confidence 34689999999999999999999 999999999864
No 388
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.22 E-value=0.17 Score=50.00 Aligned_cols=33 Identities=30% Similarity=0.363 Sum_probs=30.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERN 58 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~ 58 (487)
+++|+|||||-.|.++|+.|++ .| .+|+|-+|+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~-----~~d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQ-----NGDGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHh-----CCCceEEEEeCC
Confidence 3689999999999999999999 78 899999997
No 389
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.17 E-value=0.16 Score=43.79 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=30.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEec
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFER 57 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~ 57 (487)
..++|+|||||-.|..-|..|.+ .|.+|+|+..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~-----~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKD-----TGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-----CCCEEEEEcC
Confidence 35789999999999999999999 9999999953
No 390
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.17 E-value=0.12 Score=50.54 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN 58 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~ 58 (487)
+|.|||||..|.+.|..|++ .|++|+++.++
T Consensus 2 kI~IiGaGa~G~ala~~L~~-----~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSS-----KKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHH-----CCCeEEEEecC
Confidence 69999999999999999999 99999999985
No 391
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.14 E-value=0.14 Score=44.59 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=28.9
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
++|.|||-|..|...|..|.+ +|++|.+++++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~-----~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAK-----AGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHH-----TTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHh-----cCCeEEeeccch
Confidence 579999999999999999999 999999999863
No 392
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.14 E-value=0.12 Score=54.56 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=32.4
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
..+|+|||||..|+-.|..|++ .|.+|+++++.++
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~-----~g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTR-----YASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHc-----cCCEEEEEEeCCc
Confidence 4689999999999999999999 9999999998775
No 393
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=0.13 Score=49.18 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=34.4
Q ss_pred EEeCC-CCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 10 LIFSP-QPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 10 ~~~~~-~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.+||- --+.-..+||+|||||-+|.-||.-|+- --.-|+++|=.+
T Consensus 342 ayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAG-----iv~hVtllEF~~ 387 (520)
T COG3634 342 AYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAG-----IVEHVTLLEFAP 387 (520)
T ss_pred eeCCCCCCcccCCceEEEECCCcchHHHHHhHHh-----hhheeeeeecch
Confidence 45541 2344467899999999999999999987 556899998654
No 394
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.07 E-value=0.14 Score=50.09 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=30.6
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
++|.|||+|..|.+.|..|++ .|++|++++++.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~-----~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLAR-----NGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCCEEEEEECCH
Confidence 479999999999999999999 999999999863
No 395
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.04 E-value=0.15 Score=49.32 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=29.8
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~ 59 (487)
++|+|||+|..|.+.|+.|+. .|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~-----~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAE-----KELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHH-----cCCCeEEEEeCCC
Confidence 579999999999999999999 886 899999854
No 396
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.01 E-value=0.13 Score=52.19 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=31.4
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
++|.|||.|..|++.|..|++ +|++|++++++..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~-----~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFAS-----RQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHh-----CCCEEEEEeCCHH
Confidence 579999999999999999999 9999999998653
No 397
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.99 E-value=0.12 Score=52.34 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
+|.|||.|..|+..|..|++ +|++|++++++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~-----~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLAD-----LGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHh-----cCCeEEEEECCHH
Confidence 69999999999999999999 9999999998653
No 398
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.99 E-value=0.24 Score=37.18 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccC
Q 043512 257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKG 294 (487)
Q Consensus 257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G 294 (487)
...+...+++.|+++++++.|++|..+++++.|+++||
T Consensus 43 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 43 AKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 44455556677999999999999999987777888876
No 399
>PRK04148 hypothetical protein; Provisional
Probab=92.95 E-value=0.14 Score=42.53 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=30.5
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
..+|++||.| .|.+.|..|++ .|++|+.+|-+..
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~-----~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKE-----SGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHH-----CCCEEEEEECCHH
Confidence 4679999999 99999999999 9999999998754
No 400
>PLN02546 glutathione reductase
Probab=92.95 E-value=0.14 Score=53.91 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=32.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
..+|+|||||..|+-.|..|++ .|.+|+|+|+.+++
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~-----~g~~Vtlv~~~~~i 287 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNG-----LKSDVHVFIRQKKV 287 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHh-----cCCeEEEEEecccc
Confidence 4689999999999999999999 99999999998764
No 401
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.79 E-value=0.16 Score=50.50 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=31.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
...+|+|||+|..|+.+|..|++ .|.+|++++++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~-----lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANG-----LGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHH-----CCCeEEEEECCH
Confidence 34679999999999999999999 999999999853
No 402
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=92.72 E-value=0.16 Score=52.78 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=31.3
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
-.+|.|||+|..|...|..|++ +|++|+++|++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~-----aG~~V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAAS-----AGHQVLLYDIRA 38 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHh-----CCCeEEEEeCCH
Confidence 3569999999999999999999 999999999874
No 403
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.67 E-value=0.17 Score=48.55 Aligned_cols=34 Identities=18% Similarity=0.366 Sum_probs=31.1
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
..+|+|||+|..|+-+|..|++ .+.+|+++++.+
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~-----~~~~V~~v~~~~ 174 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTR-----IAKKVTLVHRRD 174 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHh-----hcCEEEEEEeCc
Confidence 4689999999999999999999 999999999854
No 404
>PRK12831 putative oxidoreductase; Provisional
Probab=92.66 E-value=0.17 Score=52.19 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=31.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
...+|+|||||..|+-+|..|.+ .|.+|+|+++.+
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r-----~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALR-----LGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHH-----cCCEEEEEeecC
Confidence 35789999999999999999999 999999998754
No 405
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.54 E-value=0.2 Score=45.10 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=30.3
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN 58 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~ 58 (487)
..+|+|||+|-.|...|..|++ .|. +++++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~-----~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLAR-----AGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHH-----cCCCEEEEECCC
Confidence 4689999999999999999999 998 69999875
No 406
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=92.46 E-value=0.17 Score=50.12 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=30.2
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCe-EEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPR-ILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~-V~VlE~~~ 59 (487)
..+|+|||+|..|+-+|..|++ .|.+ |+|+++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~-----~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVL-----LGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-----cCCCeEEEEeecc
Confidence 3579999999999999999999 8986 99998753
No 407
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.40 E-value=0.16 Score=52.88 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=30.6
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
++|.|||+|..|.+-|..|++ +|++|+|++++.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~-----~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLL-----AGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHh-----CCCeEEEEeCCH
Confidence 479999999999999999999 999999999864
No 408
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.35 E-value=0.18 Score=48.24 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
+|.|||.|..|.+.|..|++ +|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~-----~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRS-----LGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHH-----CCCEEEEEECCH
Confidence 69999999999999999999 999999998753
No 409
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=92.31 E-value=0.13 Score=42.56 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=29.0
Q ss_pred CCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 15 QPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 15 ~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
+..++...+|.|||+|-.|.+.|..|.+ +|+.|.-+..++
T Consensus 4 ~~~~~~~l~I~iIGaGrVG~~La~aL~~-----ag~~v~~v~srs 43 (127)
T PF10727_consen 4 PATQAARLKIGIIGAGRVGTALARALAR-----AGHEVVGVYSRS 43 (127)
T ss_dssp --------EEEEECTSCCCCHHHHHHHH-----TTSEEEEESSCH
T ss_pred cccCCCccEEEEECCCHHHHHHHHHHHH-----CCCeEEEEEeCC
Confidence 3446677899999999999999999999 999998776543
No 410
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.27 E-value=0.18 Score=51.98 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=31.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
...+|+|||+|..|+.|+..++. .|.+|+++|.++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~-----lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGS-----LGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence 46789999999999999999999 999999998865
No 411
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.19 E-value=0.19 Score=49.26 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=30.7
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
++|.|||+|-.||++|.-|++ .|++|+.+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~-----~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAE-----LGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHH-----cCCeEEEEeCCH
Confidence 579999999999999999999 999999999854
No 412
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.18 E-value=0.19 Score=51.70 Aligned_cols=34 Identities=21% Similarity=0.533 Sum_probs=31.4
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.++|.|+|.|.+|.++|..|++ .|++|++.|+++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~-----~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVK-----LGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHH-----CCCEEEEECCCC
Confidence 4679999999999999999999 999999999764
No 413
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.16 E-value=0.19 Score=51.81 Aligned_cols=34 Identities=21% Similarity=0.149 Sum_probs=31.2
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.++|+|+|.|.+|.++|..|.+ .|.+|++.|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~-----~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRA-----HLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHH-----cCCEEEEEcCCC
Confidence 4679999999999999999999 999999999654
No 414
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=91.90 E-value=0.23 Score=51.07 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=29.5
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCC--CCeEEEEecCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~--G~~V~VlE~~~ 59 (487)
++|+|||+|..|+.+|..|++ . |++|+.+|.+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~-----~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIAL-----KCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCCCCeEEEEECCH
Confidence 579999999999999999999 7 58899999754
No 415
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=91.85 E-value=0.23 Score=50.19 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=32.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV 61 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~ 61 (487)
.++|+|+|-|.+|++||..|.+ .|.+|++.|.+...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~-----~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLK-----LGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHH-----CCCeEEEEcCCCCc
Confidence 6889999999999999999999 99999999976544
No 416
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.84 E-value=0.25 Score=49.55 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=31.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
...+|+|+|+|..|+.+|..++. .|.+|+|+|.++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~-----~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRG-----QGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEECCh
Confidence 35789999999999999999999 999999999864
No 417
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=91.83 E-value=0.37 Score=36.80 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=30.1
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCC-CCeEEEEec
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNW-HPRILMFER 57 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~-G~~V~VlE~ 57 (487)
-..++++|+|+|..|..+|..|.+ . +.+|.++++
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~-----~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLAD-----EGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCCEEEEEcC
Confidence 345789999999999999999999 7 689999987
No 418
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.78 E-value=0.2 Score=47.99 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=31.4
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
-+.|.|||||..|-.-|+.++. .|++|+++|.+.
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~-----~G~~V~l~D~~~ 36 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFAL-----AGYDVVLKDISP 36 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhh-----cCCceEEEeCCH
Confidence 4679999999999999999999 999999999873
No 419
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.64 E-value=0.32 Score=43.90 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=31.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
..++|+|+|.|-.|..+|..|.+ .|.+|++.|.+.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~-----~G~~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLE-----EGAKLIVADINE 61 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEcCCH
Confidence 34789999999999999999999 999999998763
No 420
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=91.57 E-value=0.28 Score=45.02 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=29.4
Q ss_pred CcEEEEC-CChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 22 PTVCIIG-SGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIG-aGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
++|.||| +|..|.+.|..|++ .|++|+++.++.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~-----~G~~V~v~~r~~ 34 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAK-----AGNKIIIGSRDL 34 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHh-----CCCEEEEEEcCH
Confidence 3699997 79999999999999 999999998754
No 421
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.56 E-value=0.26 Score=51.21 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=30.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN 58 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~ 58 (487)
...+|+|+|.|.+|++++..|++ .|.+|++.|.+
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~-----~G~~v~~~D~~ 44 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTR-----FGARPTVCDDD 44 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHH-----CCCEEEEEcCC
Confidence 34679999999999999999999 99999999964
No 422
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.34 E-value=0.3 Score=53.19 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=31.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
-.+|+|||||..|...|..++. .|++|+++|.++.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~-----~G~~V~l~d~~~~ 347 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSAS-----KGVPVIMKDINQK 347 (715)
T ss_pred cceEEEECCchhHHHHHHHHHh-----CCCeEEEEeCCHH
Confidence 3579999999999999999999 9999999998753
No 423
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.32 E-value=0.33 Score=46.73 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=32.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
...+|+|||.|..|..+|..|++ .|.+|++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~-----~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKA-----LGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----CCCEEEEEECCH
Confidence 46789999999999999999999 999999999874
No 424
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=91.26 E-value=0.25 Score=46.77 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=31.9
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.+...+|+|||||.+|++.|..+.+..+ + -+|.|+|-.+
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~--~-g~vgIvep~e 74 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLG--S-GSVGIVEPAE 74 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcC--C-CceEEecchh
Confidence 4467899999999999999999988543 3 3899998765
No 425
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.22 E-value=0.31 Score=52.96 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=31.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.-++|+|||||..|...|+.++. +|++|+++|.+.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~-----~G~~V~l~d~~~ 346 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSAS-----KGTPIVMKDINQ 346 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHh-----CCCeEEEEeCCH
Confidence 34579999999999999999999 999999999865
No 426
>PRK06223 malate dehydrogenase; Reviewed
Probab=91.15 E-value=0.34 Score=47.00 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=29.7
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~ 59 (487)
++|+|||+|..|.+.|+.|+. .|. +|.++|.+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCCeEEEEEECCC
Confidence 689999999999999999998 765 999999854
No 427
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.05 E-value=0.35 Score=46.26 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=31.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~ 59 (487)
..++|+|||+|-+|-++|+.|++ .|. +|+|++|+.
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~-----~G~~~I~I~nR~~ 161 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLT-----LGVERLTIFDVDP 161 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHH-----cCCCEEEEECCCH
Confidence 34689999999999999999999 886 899998863
No 428
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.99 E-value=0.31 Score=50.08 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=31.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.+.|+|+|+|-+|.++|..|++ .|.+|++.|++.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~-----~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHK-----LGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHH-----CCCEEEEEcCCC
Confidence 4679999999999999999999 999999998753
No 429
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.93 E-value=0.36 Score=49.50 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=31.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
.++|+|+|.|-+|+++|..|++ .|++|++.|....
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~-----~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRK-----NGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCCC
Confidence 4679999999999999999999 9999999997654
No 430
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.85 E-value=0.45 Score=38.50 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=28.7
Q ss_pred EEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 24 VvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
|+|||.|-.|...|..|.+ .+.+|+++|++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~-----~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-----GGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-----TTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHh-----CCCEEEEEECCcH
Confidence 7999999999999999999 8999999999753
No 431
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=90.77 E-value=0.37 Score=49.62 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=31.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~ 59 (487)
...+|+|||||..|+-+|..|++ .|. +|+++++++
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~-----~G~~~Vtlv~~~~ 307 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKR-----LGAESVTIVYRRG 307 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-----cCCCeEEEeeecC
Confidence 35689999999999999999999 887 899998754
No 432
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=90.62 E-value=0.29 Score=47.38 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=29.4
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
++|.|+|+|..|...|++|++ .|.+|+++=|.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~-----~g~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAK-----AGHDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHh-----CCCeEEEEecHH
Confidence 479999999999999999999 998888886654
No 433
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.58 E-value=0.39 Score=46.53 Aligned_cols=32 Identities=34% Similarity=0.425 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCC--CeEEEEecCC
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWH--PRILMFERNG 59 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G--~~V~VlE~~~ 59 (487)
+|+|||+|-.|.++|+.|+. .| .+|++++++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCCCCEEEEEeCCc
Confidence 69999999999999999999 88 5899999864
No 434
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=90.52 E-value=0.39 Score=46.31 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=30.5
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
++|.|||.|..|...|..|++ .|++|++++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~-----~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK-----AGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH-----CCCeEEEEcCCH
Confidence 579999999999999999999 999999998864
No 435
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.50 E-value=0.45 Score=46.40 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=30.6
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNGV 60 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~~ 60 (487)
.+|+|||||-.|.+.|+.|+. .|+ +|.++|.+..
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~-----~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVL-----KNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCCCeEEEEeCCCc
Confidence 689999999999999999999 885 9999998654
No 436
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=90.46 E-value=0.39 Score=47.95 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=31.7
Q ss_pred CCCcEEEEC-CChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 20 QEPTVCIIG-SGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIG-aGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
...+|+||| .|..|-+.|..|++ +|++|+++++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~-----~G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTL-----SGYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHH-----CCCeEEEeCCCc
Confidence 457899999 89999999999999 999999999854
No 437
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=90.46 E-value=0.4 Score=44.17 Aligned_cols=35 Identities=26% Similarity=0.479 Sum_probs=30.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCC---eEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP---RILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~---~V~VlE~~~ 59 (487)
...+|+|+|||-+|..+|..|.+ .|. +|.|++++.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~-----~G~~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLA-----AGAKPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHH-----cCcCcceEEEEeCCC
Confidence 34689999999999999999999 886 599999873
No 438
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.43 E-value=0.42 Score=49.25 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=31.3
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
..+|+|||+|..|+.++..++. .|.+|+++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~-----lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANS-----LGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence 5789999999999999999999 999999999865
No 439
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=90.36 E-value=0.39 Score=52.08 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=30.7
Q ss_pred CCcEEEECCChhHHHHHHHHH-HhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLR-QYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~-~~~~~~~G~~V~VlE~~~ 59 (487)
-.+|+|||||..|..-|..++ + .|++|+++|.++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~-----~G~~V~l~d~~~ 338 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATK-----AGIPVRIKDINP 338 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHH-----cCCeEEEEeCCH
Confidence 457999999999999999988 7 899999999875
No 440
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=90.35 E-value=0.32 Score=52.99 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=31.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.-.+|.|||||..|...|+.++. .|++|+++|.++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~-----~G~~V~l~d~~~ 368 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVD-----KGLKTVLKDATP 368 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHh-----CCCcEEEecCCH
Confidence 34579999999999999999999 999999999865
No 441
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=90.23 E-value=0.35 Score=46.46 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
+|.|||.|..|.+.|..|++ .|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~-----~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAK-----AGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHH-----CCCeEEEEcCCH
Confidence 48999999999999999999 999999999864
No 442
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.03 E-value=0.37 Score=52.43 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=30.9
Q ss_pred CCcEEEECCChhHHHHHHHHH-HhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLR-QYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~-~~~~~~~G~~V~VlE~~~ 59 (487)
-.+|+|||||..|..-|..++ . .|++|+++|.+.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~-----~G~~V~l~d~~~ 343 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATK-----AGLPVRIKDINP 343 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHH-----cCCeEEEEeCCH
Confidence 467999999999999999999 7 899999999864
No 443
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=90.03 E-value=0.41 Score=52.70 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=30.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCe-EEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPR-ILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~-V~VlE~~~ 59 (487)
..+|+|||||..|+-+|..|.+ .|.+ |+|+++++
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r-----~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKR-----LGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHH-----cCCCeEEEeeecC
Confidence 4689999999999999999999 8987 99998764
No 444
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=89.97 E-value=0.5 Score=45.27 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=32.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
..++|+|||+|-.|.+.|..|+. .|.+|++++++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~-----~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSA-----LGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence 35789999999999999999999 999999999864
No 445
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=89.93 E-value=0.63 Score=39.34 Aligned_cols=35 Identities=37% Similarity=0.482 Sum_probs=29.3
Q ss_pred CcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 22 PTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
++|+|||| |-.|.+.|+.|.... -+.++.++|.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~---l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQG---LADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTT---TSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCC---CCCceEEeccCc
Confidence 47999999 999999999999932 345899999863
No 446
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=89.68 E-value=0.27 Score=49.05 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=29.8
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCC--------CCCCeEEEEecCCCc
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSK--------NWHPRILMFERNGVV 61 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~--------~~G~~V~VlE~~~~~ 61 (487)
.+|+|||||+.|.=.|..|+..-.+ ....+|+++|+.+++
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 4799999999999999999873210 012488888887663
No 447
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=89.56 E-value=0.5 Score=45.58 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=30.5
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.+|.|||.|..|.+.|..|++ .|++|++++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~-----~G~~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLK-----QGHQLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHH-----CCCeEEEEcCCH
Confidence 369999999999999999999 999999999864
No 448
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.55 E-value=0.49 Score=48.93 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=30.4
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN 58 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~ 58 (487)
.++|.|+|.|.+|.++|..|.+ .|.+|++.|+.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~-----~G~~V~~~D~~ 47 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSE-----LGCDVVVADDN 47 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHH-----CCCEEEEECCC
Confidence 4569999999999999999999 99999999974
No 449
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.47 E-value=0.51 Score=39.48 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=29.2
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN 58 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~ 58 (487)
..+|+|||+|-.|...|..|++ .|. +++|+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~-----~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLAR-----SGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHH-----HTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHH-----hCCCceeecCCc
Confidence 4679999999999999999999 897 79999874
No 450
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=89.40 E-value=0.52 Score=45.50 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
+|.|||.|..|.+.|..|++ .|++|++++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~-----~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAK-----RGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHH-----CCCEEEEEECCH
Confidence 69999999999999999999 999999999864
No 451
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=89.38 E-value=0.23 Score=48.23 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=34.4
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG 63 (487)
+.+.+|||||..||-.+..-.+ -|-+||++|--+.+||
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~r-----LGseVT~VEf~~~i~~ 248 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSR-----LGSEVTVVEFLDQIGG 248 (506)
T ss_pred cceEEEEcCceeeeehhhHHHh-----cCCeEEEEEehhhhcc
Confidence 5689999999999999999999 9999999999887664
No 452
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=89.35 E-value=0.59 Score=44.37 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=31.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
..++++|+|+|-+|.+.|+.|++ .|.+|+|+.|+.
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~-----~g~~v~v~~R~~ 150 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLK-----ADCNVIIANRTV 150 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence 35689999999999999999999 999999998753
No 453
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.33 E-value=0.66 Score=44.98 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=30.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCC--CeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWH--PRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G--~~V~VlE~~~ 59 (487)
+..+|+|||+|-.|.++|+.|+. .| -++.++|.+.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~-----~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILA-----KGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-----cCCCCEEEEEeCCc
Confidence 45689999999999999999998 55 4799999754
No 454
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.25 E-value=0.59 Score=46.84 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=31.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
....|+|||.|..|..+|..|+. .|.+|+|+|...
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~-----~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARG-----MGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhh-----CcCEEEEEeCCh
Confidence 46789999999999999999999 999999999764
No 455
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=89.22 E-value=0.52 Score=46.30 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=28.6
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCC--------CeEEEEecC
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWH--------PRILMFERN 58 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G--------~~V~VlE~~ 58 (487)
+|.|||||-.|.+.|..|++ .| ++|+++.++
T Consensus 1 kI~VIGaG~wGtALA~~la~-----ng~~~~~~~~~~V~lw~~~ 39 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE-----NARALPELFEESVRMWVFE 39 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH-----cCCcccccCCceEEEEEec
Confidence 58999999999999999999 89 999999773
No 456
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=89.21 E-value=0.5 Score=48.72 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=30.7
Q ss_pred CCcEEEECCChhHHH-HHHHHHHhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSS-LAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLs-aA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.++|.|||.|-+|++ +|..|++ .|++|++.|.+.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~-----~G~~V~~~D~~~ 41 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLN-----LGYKVSGSDLKE 41 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHh-----CCCeEEEECCCC
Confidence 457999999999999 5999999 999999999764
No 457
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=89.16 E-value=0.6 Score=45.80 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=30.4
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN 58 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~ 58 (487)
..+|+|||+|-.|..+|..|++ .|+ +++|+|..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~-----aGvg~i~lvD~D 57 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVR-----AGIGKLTIADRD 57 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-----cCCCEEEEEcCC
Confidence 4689999999999999999999 997 89999985
No 458
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=89.16 E-value=0.6 Score=45.28 Aligned_cols=34 Identities=35% Similarity=0.443 Sum_probs=29.7
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~ 59 (487)
..+|+|||+|..|.+.|..|++ .|. +|++++++.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~-----~g~~~~V~~~dr~~ 41 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRR-----LGLAGEIVGADRSA 41 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHh-----cCCCcEEEEEECCH
Confidence 3579999999999999999999 884 899998753
No 459
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=89.15 E-value=0.72 Score=39.46 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=30.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~ 59 (487)
...+|+|||+|..|.+.|..|++ .| .+|++++++.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~-----~g~~~v~v~~r~~ 53 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAE-----LGAAKIVIVNRTL 53 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----CCCCEEEEEcCCH
Confidence 35789999999999999999999 85 8899998763
No 460
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=89.15 E-value=0.63 Score=45.70 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=30.6
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN 58 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~ 58 (487)
..+|+|||+|--|..+|..|++ .|. +++|+|..
T Consensus 24 ~~~VlVvG~GglGs~va~~La~-----aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVR-----AGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-----cCCCeEEEEeCC
Confidence 5689999999999999999999 998 99999984
No 461
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=89.08 E-value=0.49 Score=47.41 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=27.1
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
+|.|||.|..|+..|..++ .|++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA------~G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA------QNHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHH------hCCcEEEEECCH
Confidence 6999999999999996665 589999999865
No 462
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=89.06 E-value=0.71 Score=41.35 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=30.3
Q ss_pred CCCcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512 20 QEPTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERN 58 (487)
Q Consensus 20 ~~~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~ 58 (487)
..++++|+|| |..|..+|..|++ .|.+|+++.|+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~-----~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAR-----EGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH-----CCCEEEEEcCC
Confidence 4578999997 9999999999999 99999999765
No 463
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.05 E-value=0.7 Score=44.93 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=30.2
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~ 59 (487)
.++|+|||+|-.|.++|+.|+. .|. ++.++|.+.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~-----~~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVN-----QGIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----cCCCCEEEEEeCCC
Confidence 3589999999999999999998 786 899999854
No 464
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=89.01 E-value=0.51 Score=45.59 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=28.1
Q ss_pred EEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512 24 VCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG 59 (487)
Q Consensus 24 VvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~ 59 (487)
|+|||||..|.+.|+.|+. .|. +|+++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCCcEEEEEeCCC
Confidence 6899999999999999998 776 999999864
No 465
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=88.99 E-value=0.49 Score=48.62 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=31.5
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
.+|.|||.|..|.+.|..|++ +|++|++++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~-----~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIAS-----RGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHH-----CCCeEEEEeCCHH
Confidence 479999999999999999999 9999999998654
No 466
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.90 E-value=0.55 Score=48.97 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=30.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.++|.|||.|.+|+++|..|++ .|++|++.|.+.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~-----~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCAR-----HGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHH-----CCCEEEEEcCCC
Confidence 4579999999999999999999 999999999754
No 467
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=88.80 E-value=0.63 Score=39.02 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=27.2
Q ss_pred EEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 24 VvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
++|+|||..+.+.|..++. -|++|+|+|-+.
T Consensus 1 L~I~GaG~va~al~~la~~-----lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAAL-----LGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHH-----CTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHh-----CCCEEEEEcCCc
Confidence 5899999999999999999 999999999764
No 468
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=88.79 E-value=0.69 Score=43.59 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=30.1
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERN 58 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~ 58 (487)
..+|+|||+|-.|..+|..|++ .| .+++|+|..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar-----~GVg~itLiD~D 63 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALAR-----TGIGAITLIDMD 63 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHH-----cCCCEEEEEeCC
Confidence 4689999999999999999999 99 689999874
No 469
>PTZ00117 malate dehydrogenase; Provisional
Probab=88.69 E-value=0.73 Score=44.90 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=30.3
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~ 59 (487)
..+|+|||||-.|.+.|+.|+. .| .++.++|.+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~-----~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQ-----KNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHH-----CCCCeEEEEECCC
Confidence 4689999999999999999998 78 6899999864
No 470
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=88.36 E-value=0.68 Score=44.74 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
+|.|||.|..|...|..|++ .|++|++++++.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~-----~g~~v~v~dr~~ 33 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLR-----GGHEVVGYDRNP 33 (301)
T ss_pred EEEEEcccHHHHHHHHHHHH-----CCCeEEEEECCH
Confidence 69999999999999999999 999999998864
No 471
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=88.21 E-value=0.76 Score=46.35 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=31.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
..+.|+|||.|..|..+|..|+. .|.+|+++|..+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~-----~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRG-----LGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-----CCCEEEEEcCCc
Confidence 35689999999999999999999 999999999864
No 472
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.09 E-value=0.87 Score=44.89 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=27.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN 58 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~ 58 (487)
..++|.|||+|..|.+.|..|++ .| .|+++-++
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~-----~g-~v~l~~~~ 38 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICAR-----RG-PTLQWVRS 38 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-----CC-CEEEEeCC
Confidence 34689999999999999999999 88 57766553
No 473
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=88.09 E-value=0.68 Score=39.82 Aligned_cols=34 Identities=29% Similarity=0.384 Sum_probs=27.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.+.++|+|=|-.|-.+|..|+. .|.+|+|.|..+
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~-----~Ga~V~V~e~DP 56 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRG-----LGARVTVTEIDP 56 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHH-----TT-EEEEE-SSH
T ss_pred CCEEEEeCCCcccHHHHHHHhh-----CCCEEEEEECCh
Confidence 5789999999999999999999 999999999865
No 474
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.92 E-value=0.84 Score=40.13 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN 58 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~ 58 (487)
+|+|||+|-.|...|..|++ .|. +++++|..
T Consensus 1 ~VlViG~GglGs~ia~~La~-----~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR-----SGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH-----cCCCeEEEEeCC
Confidence 58999999999999999999 998 59999874
No 475
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.84 E-value=0.7 Score=47.51 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=30.6
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
++|+|||+|..|...|..|.+ .|++|+++|++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~-----~g~~v~vid~~~ 33 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSG-----ENNDVTVIDTDE 33 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCCcEEEEECCH
Confidence 479999999999999999999 999999999864
No 476
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=87.82 E-value=0.79 Score=43.50 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=31.4
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
.+|.+||-|..|...|.+|.+ +|++|+|++++..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~-----aG~~v~v~~r~~~ 34 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLK-----AGHEVTVYNRTPE 34 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHH-----CCCEEEEEeCChh
Confidence 369999999999999999999 9999999999754
No 477
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.82 E-value=0.85 Score=45.17 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=30.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCC-------CeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWH-------PRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-------~~V~VlE~~~ 59 (487)
.+.+|.|||+|.-|.+.|..|++ .| ++|.++.++.
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~-----n~~~~~~~~~~V~lw~~~~ 51 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGE-----NTQRNYIFHNEVRMWVLEE 51 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh-----cCCcccCCCCeEEEEEecc
Confidence 34689999999999999999999 77 7999987654
No 478
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=87.77 E-value=0.84 Score=43.79 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=30.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCe-EEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPR-ILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~-V~VlE~~~ 59 (487)
..+.++|+|||=+|.++|+.|++ .|.+ |+|+.|+.
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~-----~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCAL-----DGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----CCCCEEEEEeCCc
Confidence 34679999999999999999999 9986 99998863
No 479
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=87.77 E-value=1 Score=34.93 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=27.9
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCC---CeEEEE-ecCC
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWH---PRILMF-ERNG 59 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G---~~V~Vl-E~~~ 59 (487)
+|.|||+|-.|.+.+..|.+ .| .+|.+. +++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~-----~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLA-----SGIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHH-----TTS-GGEEEEEEESSH
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCCCceeEEeeccCcH
Confidence 48899999999999999999 89 899865 7653
No 480
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=87.76 E-value=0.66 Score=47.75 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=30.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.++|+|||+|.+|+=.|..|++ .+.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~-----~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAK-----VAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHH-----hCCeEEEEEeec
Confidence 4689999999999999999999 899999998754
No 481
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.61 E-value=0.79 Score=43.37 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=30.4
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCC---CeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH---PRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G---~~V~VlE~~~ 59 (487)
+++|.|||+|..|.+.|..|.+ .| .+|.+++++.
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~-----~g~~~~~v~v~~r~~ 38 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLA-----SGVPAKDIIVSDPSP 38 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHh-----CCCCcceEEEEcCCH
Confidence 4679999999999999999999 88 7899999864
No 482
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=87.59 E-value=0.98 Score=42.13 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=32.5
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.+..+++|+|||..+...|..++. -|++|+|+|-++
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~~-----lGf~V~v~D~R~ 133 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALAP-----LPCRVTWVDSRE 133 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHhc-----CCCEEEEEeCCc
Confidence 456789999999999999999999 999999999654
No 483
>PLN02256 arogenate dehydrogenase
Probab=87.51 E-value=0.94 Score=43.75 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=31.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
..++|.|||.|..|-+.|..|++ .|++|++++++.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~-----~G~~V~~~d~~~ 69 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVK-----QGHTVLATSRSD 69 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHh-----CCCEEEEEECcc
Confidence 35689999999999999999999 999999998753
No 484
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=87.44 E-value=0.8 Score=51.42 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=31.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
..++|+|||||..|+-+|..+.+ .|.+|+++.+++
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R-----~Ga~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKR-----LGGNVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----cCCEEEEEEecC
Confidence 34789999999999999999999 999999998764
No 485
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=87.42 E-value=0.9 Score=43.75 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=31.0
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
++|.|||||.-|.+.|..|++ .|++|+++-++..
T Consensus 2 ~kI~ViGaGswGTALA~~la~-----ng~~V~lw~r~~~ 35 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLAR-----NGHEVRLWGRDEE 35 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHh-----cCCeeEEEecCHH
Confidence 579999999999999999999 9999999987643
No 486
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=87.35 E-value=0.96 Score=43.15 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=31.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~ 59 (487)
..++|+|+|+|-+|.++|+.|++ .| .+|+|+.|+.
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~-----~g~~~V~v~~R~~ 157 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLD-----LGVAEITIVNRTV 157 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHH-----cCCCEEEEEeCCH
Confidence 45689999999999999999999 99 7999998863
No 487
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=87.34 E-value=1.1 Score=37.98 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=28.5
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN 58 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~ 58 (487)
+|+|||+|-.|...|..|++ .|. +++|+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~-----~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR-----SGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCCCEEEEEcCC
Confidence 48999999999999999999 997 79999875
No 488
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=87.31 E-value=1 Score=42.77 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=32.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
..+.|+|||.|..|-+-|..|++ +|+.|.++.+...
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~-----~g~~v~i~g~d~~ 37 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKE-----AGLVVRIIGRDRS 37 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHH-----cCCeEEEEeecCc
Confidence 35689999999999999999999 9999999988654
No 489
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=87.16 E-value=1.1 Score=40.50 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=30.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN 58 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~ 58 (487)
...+|+|||+|-.|..+|..|++ .|. +++++|..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~-----~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAG-----AGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-----cCCCeEEEecCC
Confidence 35689999999999999999999 996 89998874
No 490
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.04 E-value=0.79 Score=47.27 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=30.3
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN 58 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~ 58 (487)
.++|.|||.|-+|.++|..|++ .|++|++.|..
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~-----~G~~v~~~D~~ 41 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVA-----GGAEVIAWDDN 41 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHH-----CCCEEEEECCC
Confidence 3579999999999999999999 99999999964
No 491
>PRK08017 oxidoreductase; Provisional
Probab=86.94 E-value=1.1 Score=41.88 Aligned_cols=33 Identities=27% Similarity=0.166 Sum_probs=29.7
Q ss_pred CcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 22 PTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
+.|+|+|| |..|.+.|..|++ +|++|+++.++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~-----~g~~v~~~~r~~ 36 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKR-----RGYRVLAACRKP 36 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence 46999999 9999999999999 999999988753
No 492
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.91 E-value=0.82 Score=46.48 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=30.2
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.+|.|||-|.+|.++|..|++ .|++|++.|++.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~-----~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQ-----KGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHH-----CCCEEEEEeCCc
Confidence 469999999999999999999 999999999753
No 493
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=86.90 E-value=0.94 Score=43.98 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=30.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCC
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNG 59 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~ 59 (487)
...+|+|||+|..|..+|..|++ .| .+|+|++++.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~-----~g~~~V~v~~r~~ 212 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAA-----KGVAEITIANRTY 212 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHH-----cCCCEEEEEeCCH
Confidence 46789999999999999999988 66 6899998863
No 494
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.75 E-value=1.1 Score=40.77 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=29.7
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN 58 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~ 58 (487)
..+|+|||+|-.|...|..|++ .|. +++++|..
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~-----~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALAR-----SGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHH-----cCCCeEEEEeCC
Confidence 4689999999999999999999 897 59999874
No 495
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=86.70 E-value=1.6 Score=43.40 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512 23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV 60 (487)
Q Consensus 23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~ 60 (487)
+|+|||||+||+++|..|+++.. .+.+|+|+|+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~--~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPL--PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCC--CCCEEEEECCCCC
Confidence 58999999999999999975211 5799999999875
No 496
>PRK00536 speE spermidine synthase; Provisional
Probab=86.68 E-value=0.7 Score=43.36 Aligned_cols=39 Identities=18% Similarity=0.080 Sum_probs=30.2
Q ss_pred CCCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 14 PQPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 14 ~~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
|+...+..++|.|||||=+| +|+.+.| ..-+|+++|=..
T Consensus 66 pl~~h~~pk~VLIiGGGDGg--~~REvLk-----h~~~v~mVeID~ 104 (262)
T PRK00536 66 GGCTKKELKEVLIVDGFDLE--LAHQLFK-----YDTHVDFVQADE 104 (262)
T ss_pred HHhhCCCCCeEEEEcCCchH--HHHHHHC-----cCCeeEEEECCH
Confidence 34456677899999999998 5789988 434899988654
No 497
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=86.67 E-value=0.94 Score=40.61 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=29.0
Q ss_pred CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN 58 (487)
Q Consensus 22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~ 58 (487)
+.+.|||+|-.|.+.|.+|++ .|++|++--++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~-----ag~eV~igs~r 33 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAK-----AGHEVIIGSSR 33 (211)
T ss_pred cEEEEeccChHHHHHHHHHHh-----CCCeEEEecCC
Confidence 578999999999999999999 99999997544
No 498
>PLN02494 adenosylhomocysteinase
Probab=86.51 E-value=1.1 Score=45.41 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=31.6
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.+.|+|||.|..|..+|..|+. .|.+|+++|..+
T Consensus 254 GKtVvViGyG~IGr~vA~~aka-----~Ga~VIV~e~dp 287 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKA-----AGARVIVTEIDP 287 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCc
Confidence 5789999999999999999998 999999999865
No 499
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=86.48 E-value=1.2 Score=40.68 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=29.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEec
Q 043512 20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFER 57 (487)
Q Consensus 20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~ 57 (487)
..++|+|||||-.++.=+..|.+ .|.+|+|+-.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~-----~gA~VtVVap 56 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLK-----KGCYVYILSK 56 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-----CCCEEEEEcC
Confidence 45689999999999999999999 9999999944
No 500
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=86.44 E-value=1.6 Score=37.50 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=28.6
Q ss_pred CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512 21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG 59 (487)
Q Consensus 21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~ 59 (487)
.+.|+|||-|--|.+-|..|+. .|.+|+|-++.+
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrD-----SG~~V~Vglr~~ 37 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRD-----SGVNVIVGLREG 37 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHH-----CC-EEEEEE-TT
T ss_pred CCEEEEECCChHHHHHHHHHHh-----CCCCEEEEecCC
Confidence 5689999999999999999999 999999988764
Done!