BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043513
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 8 LPVGCKFLPSEEQLVHYYLFNKISG--IPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNL 65
LP G +F P++++LV +YL K +G +P P + +VDLY ++ PWD+ ++ L
Sbjct: 15 LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIA----EVDLYKFD-PWDLPER----AL 65
Query: 66 EDGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYEND 125
+ YFFT +K NGSR NR G+G W+ A + V R R +G KK +
Sbjct: 66 FGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPR--GRTLGIKKALVFYAG 123
Query: 126 NFPHN--RCWIMHEYTLNASLLPQNHHSSS-----DCVLCRL 160
P WIMHEY L + D VLCRL
Sbjct: 124 KAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRL 165
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 21/163 (12%)
Query: 8 LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPN--L 65
LP G +F P++E+L+ YL K +G F + ++DLY ++ PW + PN L
Sbjct: 17 LPPGFRFYPTDEELMVQYLCRKAAGYD--FSLQLIAEIDLYKFD-PWVL------PNKAL 67
Query: 66 EDGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYEND 125
++ YFF+ +K NGSR NR GSG W+ +++ + +G KK +
Sbjct: 68 FGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR--VGIKKALVFYIG 125
Query: 126 NFPHNRC--WIMHEYTLNASLLPQNHHSSS---DCVLCRLRKN 163
P WIMHEY L + P + S+ D VLCR+ K
Sbjct: 126 KAPKGTKTNWIMHEYRL---IEPSRRNGSTKLDDWVLCRIYKK 165
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 21/163 (12%)
Query: 8 LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPN--L 65
LP G +F P++E+L+ YL K +G F + ++DLY ++ PW + PN L
Sbjct: 20 LPPGFRFYPTDEELMVQYLCRKAAGYD--FSLQLIAEIDLYKFD-PWVL------PNKAL 70
Query: 66 EDGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYEND 125
++ YFF+ +K NGSR NR GSG W+ +++ + +G KK +
Sbjct: 71 FGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR--VGIKKALVFYIG 128
Query: 126 NFPHNRC--WIMHEYTLNASLLPQNHHSSS---DCVLCRLRKN 163
P WIMHEY L + P + S+ D VLCR+ K
Sbjct: 129 KAPKGTKTNWIMHEYRL---IEPSRRNGSTKLDDWVLCRIYKK 168
>pdb|3QPF|A Chain A, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha-Mannosidases Provides Unique
Insight Into The Processing Of N- Linked Glycans,
Streptococcus Pneumoniae Sp_2144 Apo-Structure
pdb|3QPF|B Chain B, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha-Mannosidases Provides Unique
Insight Into The Processing Of N- Linked Glycans,
Streptococcus Pneumoniae Sp_2144 Apo-Structure
pdb|3QRY|B Chain B, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Streptococcus Pneumoniae Sp_2144 1-Deoxymannojirimycin
Complex
pdb|3QRY|A Chain A, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Streptococcus Pneumoniae Sp_2144 1-Deoxymannojirimycin
Complex
pdb|3QSP|A Chain A, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Streptococcus Pneumoniae Sp_2144 Non-Productive
Substrate Complex With Alpha-1,6-Mannobiose
pdb|3QSP|B Chain B, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Streptococcus Pneumoniae Sp_2144 Non-Productive
Substrate Complex With Alpha-1,6-Mannobiose
Length = 426
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 33/149 (22%)
Query: 246 VKNNPEEKPPVPRTKQTLLEQIEHLAENGYPSTFEENQQQPM-----TEPNLHNQLELSQ 300
K+ PE R L+ + E+G STF P + L L +++
Sbjct: 19 AKDYPEWVDVFERCYTDTLDNTVEILEDG--STFVLTGDIPAMWLRDSTAQLRPYLHVAK 76
Query: 301 NHPLMEQTPSYLLKGQEENHQLAVTEQNPHHLELSDNHQNMNHTSSSNLEENQLPATEQS 360
L+ QT + L+K Q+ + ++P+ +S N+EEN E
Sbjct: 77 RDALLRQTIAGLVK-----RQMTLVLKDPY-------------ANSFNIEENWKGHHETD 118
Query: 361 HDDAIYSELTDINSWVVHQLTRIDDATYP 389
H TD+N W+ + +D YP
Sbjct: 119 H--------TDLNGWIWERKYEVDSLCYP 139
>pdb|3TL4|X Chain X, Crystal Structure Of The Trna Binding Domain Of
Glutaminyl-Trna Synthetase From Saccharomyces Cerevisiae
Length = 187
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 217 VENHQNQYVQENQSQPLNERSPHKL---LESSVKNNPEEKPPVPRTKQTLLEQ 266
V N+ QY+QEN+ + L ER +KL + + VKN E K PR+ + +++Q
Sbjct: 122 VRNYVXQYIQENKERILTER--YKLVPGIFADVKNLKELKWADPRSFKPIIDQ 172
>pdb|1XFI|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g17340
pdb|2Q40|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g17340
Length = 367
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 146 PQNHHSSSDCVL-CRLRKNGGQSVGIKDSRKKIKNDKQVQ 184
P++H D +L CRLR+ + +G +D KK+K+++ +
Sbjct: 91 PESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAK 130
>pdb|3EWC|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodial
Vivax In Complex With Mt-Coformycin
Length = 371
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 17 SEEQLVHYYLFNKISGIPTPFVEYFVKDVDLY-DYEEPWDIWK 58
S+E+++ YYLF K FVE +K D++ DYE D+ K
Sbjct: 68 SDEEVLDYYLFAKGGKSLGEFVEKAIKVADIFHDYEVIEDLAK 110
>pdb|2PGF|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodium
Vivax In Complex With Adenosine
pdb|2PGR|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodium
Vivax In Complex With Pentostatin
pdb|2QVN|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodium
Vivax In Complex With Guanosine
Length = 371
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 17 SEEQLVHYYLFNKISGIPTPFVEYFVKDVDLY-DYEEPWDIWK 58
S+E+++ YYLF K FVE +K D++ DYE D+ K
Sbjct: 76 SDEEVLDYYLFAKGGKSLGEFVEKAIKVADIFHDYEVIEDLAK 118
>pdb|3EWD|A Chain A, Crystal Structure Of Adenosine Deaminase Mutant (Delta
Asp172) From Plasmodium Vivax In Complex With
Mt-Coformycin
Length = 370
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 17 SEEQLVHYYLFNKISGIPTPFVEYFVKDVDLY-DYEEPWDIWK 58
S+E+++ YYLF K FVE +K D++ DYE D+ K
Sbjct: 68 SDEEVLDYYLFAKGGKSLGEFVEKAIKVADIFHDYEVIEDLAK 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,515,960
Number of Sequences: 62578
Number of extensions: 605955
Number of successful extensions: 879
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 22
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)