Query 043513
Match_columns 406
No_of_seqs 150 out of 984
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 09:36:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 6.9E-51 2.4E-55 372.7 15.5 154 3-165 10-170 (174)
2 1ut7_A No apical meristem prot 100.0 1.3E-50 4.4E-55 370.1 14.4 152 5-165 14-167 (171)
3 1ldd_A APC2WHB, anaphase promo 22.1 39 0.0013 26.4 1.8 28 8-36 36-64 (74)
4 1cmb_A Met APO-repressor; DNA- 8.6 3.1E+02 0.011 22.4 3.6 38 15-59 50-87 (104)
5 3nr5_A MAF1, repressor of RNA 6.7 1.3E+02 0.0045 26.8 0.7 15 41-56 118-132 (164)
6 3cpr_A Dihydrodipicolinate syn 6.7 1.7E+02 0.0057 27.8 1.5 28 8-37 118-145 (304)
7 3fkr_A L-2-keto-3-deoxyarabona 6.4 2.3E+02 0.0079 26.9 2.3 28 8-37 110-140 (309)
8 4dox_A Coat protein; all helix 6.0 2.4E+02 0.0083 26.4 2.1 23 8-30 155-177 (226)
9 3dz1_A Dihydrodipicolinate syn 5.7 2.2E+02 0.0076 27.1 1.8 17 8-26 109-125 (313)
10 1f6k_A N-acetylneuraminate lya 5.7 2.2E+02 0.0075 26.8 1.7 18 8-26 106-123 (293)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=6.9e-51 Score=372.72 Aligned_cols=154 Identities=35% Similarity=0.621 Sum_probs=128.7
Q ss_pred cccCCCCCCCeEcCChHHHHHHHHHHhHcCCCCCCcceeeEeccCCCCCCCcchhhhcCCCCCCCCceEEEEecccccCC
Q 043513 3 ERSRILPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLEDGEDLYFFTNLKKKSI 82 (406)
Q Consensus 3 ~~~~~LPpGfRF~PTDEELV~~YL~rKi~G~plp~~~~vI~evDVY~~~ePWdLp~~~~~~~~~d~eeWYFFspr~rk~~ 82 (406)
+....|||||||+|||||||.|||++|+.|.+++. .+|.++|||.+ +||+||+.+. .++.+|||||++++||+
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~--~~I~evDvy~~-~Pw~Lp~~~~----~g~~ewYFFs~r~~ky~ 82 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPV--PIIAEVDLYKF-DPWDLPERAL----FGAREWYFFTPRDRKYP 82 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSS--SCCEECCGGGS-CGGGSGGGCS----SCSSEEEEEEECCC---
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCc--CeeeecccccC-Cchhhhhhhc----cCCceEEEEeccccccC
Confidence 45678999999999999999999999999999987 58999999995 9999998742 24567999999999999
Q ss_pred CCCccceecccceeecccCCeEEEeCCCCcceeeEEeEeeeCCCCCC--CcCeEEEEEEeCCCCCCC-----CCCCCCCe
Q 043513 83 NGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNFPH--NRCWIMHEYTLNASLLPQ-----NHHSSSDC 155 (406)
Q Consensus 83 nG~R~~R~tggG~WKatG~~k~I~~~~~g~vIG~KKtL~Fy~g~sp~--kT~WiMhEY~L~~~~~~~-----~~~~~~d~ 155 (406)
+|.|++|+|++||||++|+++.|.. .|.+||+||+|+||.|+++. +|+|+||||+|....... .....++|
T Consensus 83 ~g~R~nR~t~~G~WkatG~dk~I~~--~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~w 160 (174)
T 3ulx_A 83 NGSRPNRAAGNGYWKATGADKPVAP--RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDW 160 (174)
T ss_dssp --CCSCEEETTEEEEECSCCEEECC--SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSE
T ss_pred CCCCceeecCCceEccCCCCcEEee--CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCE
Confidence 9999999999999999999999986 37999999999999998764 899999999999864321 12356899
Q ss_pred EEEEEEEcCC
Q 043513 156 VLCRLRKNGG 165 (406)
Q Consensus 156 VLCRIykK~~ 165 (406)
||||||+|+.
T Consensus 161 VlCrvf~K~~ 170 (174)
T 3ulx_A 161 VLCRLYNKKN 170 (174)
T ss_dssp EEEEEEESCC
T ss_pred EEEEEEEcCC
Confidence 9999999875
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.3e-50 Score=370.05 Aligned_cols=152 Identities=31% Similarity=0.598 Sum_probs=124.2
Q ss_pred cCCCCCCCeEcCChHHHHHHHHHHhHcCCCCCCcceeeEeccCCCCCCCcchhhhcCCCCCCCCceEEEEecccccCCCC
Q 043513 5 SRILPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLEDGEDLYFFTNLKKKSING 84 (406)
Q Consensus 5 ~~~LPpGfRF~PTDEELV~~YL~rKi~G~plp~~~~vI~evDVY~~~ePWdLp~~~~~~~~~d~eeWYFFspr~rk~~nG 84 (406)
...|||||||+|||||||.|||++|+.|.+++. .+|.++|||.+ +||+||+... .++.+||||+++++++++|
T Consensus 14 ~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~--~~I~e~Diy~~-~Pw~Lp~~~~----~g~~ewyFFs~r~~k~~~g 86 (171)
T 1ut7_A 14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSL--QLIAEIDLYKF-DPWVLPNKAL----FGEKEWYFFSPRDRKYPNG 86 (171)
T ss_dssp SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSS--CCSEECCGGGS-CGGGHHHHSS----SCSSEEEEEEECCC-----
T ss_pred ccCCCCcceeCCChHHHHHHHHHHHhcCCCCCC--CeEeecccccC-ChhHhhchhh----cCCccEEEEeccccccCCC
Confidence 468999999999999999999999999999986 58999999995 9999999842 3456799999999999999
Q ss_pred CccceecccceeecccCCeEEEeCCCCcceeeEEeEeeeCCCCCC--CcCeEEEEEEeCCCCCCCCCCCCCCeEEEEEEE
Q 043513 85 SRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNFPH--NRCWIMHEYTLNASLLPQNHHSSSDCVLCRLRK 162 (406)
Q Consensus 85 ~R~~R~tggG~WKatG~~k~I~~~~~g~vIG~KKtL~Fy~g~sp~--kT~WiMhEY~L~~~~~~~~~~~~~d~VLCRIyk 162 (406)
.|++|+|++||||++|+++.|.. ++.+||+||+|+||.|+++. +|+|+||||+|............++|||||||+
T Consensus 87 ~R~~R~t~~G~Wk~tG~~k~I~~--~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~ 164 (171)
T 1ut7_A 87 SRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYK 164 (171)
T ss_dssp --CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEE
T ss_pred CcccccCCCCEEeccCCCceEEe--cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEE
Confidence 99999999999999999999997 46899999999999998764 899999999999864322234678999999999
Q ss_pred cCC
Q 043513 163 NGG 165 (406)
Q Consensus 163 K~~ 165 (406)
|+.
T Consensus 165 k~~ 167 (171)
T 1ut7_A 165 KQS 167 (171)
T ss_dssp CC-
T ss_pred cCC
Confidence 986
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=22.09 E-value=39 Score=26.45 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=23.3
Q ss_pred CCCCCeEcC-ChHHHHHHHHHHhHcCCCCC
Q 043513 8 LPVGCKFLP-SEEQLVHYYLFNKISGIPTP 36 (406)
Q Consensus 8 LPpGfRF~P-TDEELV~~YL~rKi~G~plp 36 (406)
.|.|+.|.. |++||-. ||.+|+....+.
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 377999998 9999888 899999987653
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=8.61 E-value=3.1e+02 Score=22.36 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=28.0
Q ss_pred cCChHHHHHHHHHHhHcCCCCCCcceeeEeccCCCCCCCcchhhh
Q 043513 15 LPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQ 59 (406)
Q Consensus 15 ~PTDEELV~~YL~rKi~G~plp~~~~vI~evDVY~~~ePWdLp~~ 59 (406)
|-|.-||++.-...-..|+|+|.+ .|+-. ..|..+|+.
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D------~Dl~K-d~~d~iP~~ 87 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDD------ADLRK-ERSDEIPEA 87 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG------GGGBT-TSCSCSCHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc------hhhhh-cCCccchHH
Confidence 467888888766678899999984 56654 477777654
No 5
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=6.66 E-value=1.3e+02 Score=26.82 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=11.6
Q ss_pred eeEeccCCCCCCCcch
Q 043513 41 FVKDVDLYDYEEPWDI 56 (406)
Q Consensus 41 vI~evDVY~~~ePWdL 56 (406)
-+.++|||++ .|..-
T Consensus 118 ~l~dC~IYsY-~Pd~~ 132 (164)
T 3nr5_A 118 CLAECDIYSY-NPDLD 132 (164)
T ss_dssp CGGGCEEEEE-CCCGG
T ss_pred CccCCeEEEE-cCCCC
Confidence 4678999998 88743
No 6
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=6.66 E-value=1.7e+02 Score=27.84 Aligned_cols=28 Identities=18% Similarity=0.193 Sum_probs=18.3
Q ss_pred CCCCCeEcCChHHHHHHHHHHhHcCCCCCC
Q 043513 8 LPVGCKFLPSEEQLVHYYLFNKISGIPTPF 37 (406)
Q Consensus 8 LPpGfRF~PTDEELV~~YL~rKi~G~plp~ 37 (406)
+|| |.|.|++++|+.||- .-...-++|.
T Consensus 118 ~~P-~y~~~~~~~l~~~f~-~ia~a~~lPi 145 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG-AIAAATEVPI 145 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH-HHHHHCCSCE
T ss_pred CCC-CCCCCCHHHHHHHHH-HHHHhcCCCE
Confidence 466 558899999999763 3333334554
No 7
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=6.36 E-value=2.3e+02 Score=26.95 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=18.6
Q ss_pred CCCCCe---EcCChHHHHHHHHHHhHcCCCCCC
Q 043513 8 LPVGCK---FLPSEEQLVHYYLFNKISGIPTPF 37 (406)
Q Consensus 8 LPpGfR---F~PTDEELV~~YL~rKi~G~plp~ 37 (406)
+|| |. |.||+++|+.||- .-...-++|.
T Consensus 110 ~~P-yy~~~~~~s~~~l~~~f~-~va~a~~lPi 140 (309)
T 3fkr_A 110 MPP-YHGATFRVPEAQIFEFYA-RVSDAIAIPI 140 (309)
T ss_dssp CCS-CBTTTBCCCHHHHHHHHH-HHHHHCSSCE
T ss_pred cCC-CCccCCCCCHHHHHHHHH-HHHHhcCCCE
Confidence 566 44 7999999999763 3333345554
No 8
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=5.96 E-value=2.4e+02 Score=26.38 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=16.7
Q ss_pred CCCCCeEcCChHHHHHHHHHHhH
Q 043513 8 LPVGCKFLPSEEQLVHYYLFNKI 30 (406)
Q Consensus 8 LPpGfRF~PTDEELV~~YL~rKi 30 (406)
-+-|..+.||++|+|.|=..+++
T Consensus 155 P~~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 155 PPSGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp CTTCCSSCCCHHHHHHHHTC---
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH
Confidence 34489999999999998665554
No 9
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=5.75 E-value=2.2e+02 Score=27.07 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=13.0
Q ss_pred CCCCCeEcCChHHHHHHHH
Q 043513 8 LPVGCKFLPSEEQLVHYYL 26 (406)
Q Consensus 8 LPpGfRF~PTDEELV~~YL 26 (406)
+||- |.||+++|+.||-
T Consensus 109 ~~P~--~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 109 APPP--SLRTDEQITTYFR 125 (313)
T ss_dssp CCCT--TCCSHHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHHH
Confidence 5674 5599999999763
No 10
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=5.68 E-value=2.2e+02 Score=26.76 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=13.9
Q ss_pred CCCCCeEcCChHHHHHHHH
Q 043513 8 LPVGCKFLPSEEQLVHYYL 26 (406)
Q Consensus 8 LPpGfRF~PTDEELV~~YL 26 (406)
+|| |.|.||+++|+.||-
T Consensus 106 ~~P-~y~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 106 VTP-FYYKFSFPEIKHYYD 123 (293)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 355 458899999999764
Done!