BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>043514
LLKVGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGL
PVKQLLRPDDTLLIGRVYRLISFEGNIK

High Scoring Gene Products

Symbol, full name Information P value
AT5G67620 protein from Arabidopsis thaliana 6.2e-30
AT5G62900 protein from Arabidopsis thaliana 6.7e-17
AT5G50090 protein from Arabidopsis thaliana 4.2e-15
AT1G60010 protein from Arabidopsis thaliana 2.7e-13
AT1G10530 protein from Arabidopsis thaliana 6.4e-12

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  043514
        (88 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2158651 - symbol:AT5G67620 "AT5G67620" species...   331  6.2e-30   1
TAIR|locus:2170693 - symbol:AT5G62900 "AT5G62900" species...   208  6.7e-17   1
TAIR|locus:2170116 - symbol:AT5G50090 "AT5G50090" species...   191  4.2e-15   1
TAIR|locus:2202690 - symbol:AT1G60010 "AT1G60010" species...   174  2.7e-13   1
TAIR|locus:2194616 - symbol:AT1G10530 "AT1G10530" species...   161  6.4e-12   1


>TAIR|locus:2158651 [details] [associations]
            symbol:AT5G67620 "AT5G67620" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0005874 "microtubule" evidence=IDA]
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005874 EMBL:AB013390
            InterPro:IPR025322 Pfam:PF14009 HOGENOM:HOG000242807 EMBL:BT009721
            EMBL:AK228248 IPI:IPI00530798 RefSeq:NP_201563.1 UniGene:At.28803
            IntAct:Q9FJW1 STRING:Q9FJW1 PRIDE:Q9FJW1 EnsemblPlants:AT5G67620.1
            GeneID:836898 KEGG:ath:AT5G67620 TAIR:At5g67620 eggNOG:NOG325939
            InParanoid:Q9FJW1 OMA:KVERIYW ProtClustDB:CLSN2717147
            Genevestigator:Q9FJW1 Uniprot:Q9FJW1
        Length = 182

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 63/84 (75%), Positives = 75/84 (89%)

Query:     4 VGNCQAAEAATVVIQHPG-NKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPV 62
             +GNCQAAEAATV+I HP  NK+ERIYWSV+A++IM SNPGHYVA++ TSPT+K+E GLP+
Sbjct:     1 MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHYVAVVVTSPTMKNEKGLPL 60

Query:    63 KQL--LRPDDTLLIGRVYRLISFE 84
             KQL  LRPDDTLLIG VYRL+SFE
Sbjct:    61 KQLKLLRPDDTLLIGHVYRLVSFE 84


>TAIR|locus:2170693 [details] [associations]
            symbol:AT5G62900 "AT5G62900" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] EMBL:CP002688 GenomeReviews:BA000015_GR
            EMBL:AB009053 InterPro:IPR025322 Pfam:PF14009 HOGENOM:HOG000242807
            EMBL:AF370174 EMBL:AY133849 IPI:IPI00520744 RefSeq:NP_201095.1
            UniGene:At.8486 STRING:Q9FM06 EnsemblPlants:AT5G62900.1
            GeneID:836410 KEGG:ath:AT5G62900 TAIR:At5g62900 eggNOG:NOG277062
            InParanoid:Q9FM06 OMA:CTVNASE PhylomeDB:Q9FM06
            ProtClustDB:CLSN2916800 ArrayExpress:Q9FM06 Genevestigator:Q9FM06
            Uniprot:Q9FM06
        Length = 161

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 47/87 (54%), Positives = 60/87 (68%)

Query:     4 VGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVK 63
             +GNCQAAEAAT VIQ P  K  R Y +V+A+E++ S+PGH+VALL +S  +     L V 
Sbjct:     1 MGNCQAAEAATTVIQQPDGKSVRFYCTVNASEVIKSHPGHHVALLLSS-AVPHGGSLRVT 59

Query:    64 Q--LLRPDDTLLIGRVYRLISFEGNIK 88
             +  LLRP D LL+G VYRLIS E  +K
Sbjct:    60 RIKLLRPSDNLLLGHVYRLISSEEVMK 86


>TAIR|locus:2170116 [details] [associations]
            symbol:AT5G50090 "AT5G50090" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] EMBL:CP002688 GenomeReviews:BA000015_GR
            EMBL:AB026650 InterPro:IPR025322 Pfam:PF14009 EMBL:BT004765
            EMBL:AK227893 IPI:IPI00539015 RefSeq:NP_199820.1 UniGene:At.29750
            EnsemblPlants:AT5G50090.1 GeneID:835073 KEGG:ath:AT5G50090
            TAIR:At5g50090 eggNOG:NOG239341 HOGENOM:HOG000242807
            InParanoid:Q9FGA2 OMA:PNGKEEK PhylomeDB:Q9FGA2
            ProtClustDB:CLSN2687010 Genevestigator:Q9FGA2 Uniprot:Q9FGA2
        Length = 159

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 42/86 (48%), Positives = 58/86 (67%)

Query:     4 VGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSEN---GL 60
             +GNCQA + A VVIQHP  K E++   VSA+ +M  NPGH V+LL ++  L S +   G 
Sbjct:     1 MGNCQAVDTARVVIQHPNGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSGHGG 60

Query:    61 PVK----QLLRPDDTLLIGRVYRLIS 82
             P++    +LLRP DTL++G VYRLI+
Sbjct:    61 PLRLTRIKLLRPTDTLVLGHVYRLIT 86


>TAIR|locus:2202690 [details] [associations]
            symbol:AT1G60010 "AT1G60010" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0006833 "water transport" evidence=RCA]
            [GO:0009651 "response to salt stress" evidence=RCA] [GO:0009750
            "response to fructose stimulus" evidence=RCA] EMBL:CP002684
            EMBL:AC005966 InterPro:IPR025322 Pfam:PF14009
            ProtClustDB:CLSN2679588 EMBL:BT004978 EMBL:AK117703 IPI:IPI00546578
            PIR:D96624 RefSeq:NP_564752.1 UniGene:At.36736 IntAct:Q9ZUJ2
            PRIDE:Q9ZUJ2 EnsemblPlants:AT1G60010.1 GeneID:842295
            KEGG:ath:AT1G60010 TAIR:At1g60010 InParanoid:Q9ZUJ2 OMA:KHQSETS
            PhylomeDB:Q9ZUJ2 ArrayExpress:Q9ZUJ2 Genevestigator:Q9ZUJ2
            Uniprot:Q9ZUJ2
        Length = 173

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 45/100 (45%), Positives = 61/100 (61%)

Query:     4 VGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALL---------ATSPTL 54
             +GNCQA +AA +V+QHP  KI+R Y  VS +EIM   PGHYV+L+         AT+ T 
Sbjct:     1 MGNCQAVDAAALVLQHPDGKIDRYYGPVSVSEIMRMYPGHYVSLIIPLPEKNIPATTTTT 60

Query:    55 --KSENGLP----VKQLLRPDDTLLIGRVYRLISFEGNIK 88
               KSE  +     VK LLRP + L++G  YRLI+ +  +K
Sbjct:    61 DDKSERKVVRFTRVK-LLRPTENLVLGHAYRLITSQEVMK 99


>TAIR|locus:2194616 [details] [associations]
            symbol:AT1G10530 "AT1G10530" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND]
            EMBL:CP002684 InterPro:IPR025322 Pfam:PF14009 EMBL:BT009710
            EMBL:AK228105 IPI:IPI00546638 RefSeq:NP_172523.1 UniGene:At.42176
            UniGene:At.42177 IntAct:Q7XJ59 EnsemblPlants:AT1G10530.1
            GeneID:837594 KEGG:ath:AT1G10530 eggNOG:NOG254438 OMA:NCQAVNA
            ProtClustDB:CLSN2679588 Genevestigator:Q7XJ59 Uniprot:Q7XJ59
        Length = 166

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 40/102 (39%), Positives = 55/102 (53%)

Query:     4 VGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVK 63
             +GNCQA  AA +V+QHPG  I+R Y SVS  E+M   PGHYV+L+      + E  +P  
Sbjct:     1 MGNCQAVNAAVLVLQHPGGIIDRYYSSVSVTEVMAMYPGHYVSLIIPLSE-EEEKNIPAT 59

Query:    64 -----------------QLLRPDDTLLIGRVYRLISFEGNIK 88
                              QLLRP + L++G  YRLI+ +  +K
Sbjct:    60 EKGDDKKQRKAVRFTRVQLLRPTENLVLGHAYRLITSQEVMK 101


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       88        88   0.00091  102 3  11 22  0.49    29
                                                     29  0.49    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  533 (57 KB)
  Total size of DFA:  103 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.47u 0.08s 10.55t   Elapsed:  00:00:01
  Total cpu time:  10.47u 0.08s 10.55t   Elapsed:  00:00:01
  Start:  Fri May 10 06:02:56 2013   End:  Fri May 10 06:02:57 2013

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