BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043514
         (88 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2
          Length = 955

 Score = 30.4 bits (67), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/27 (55%), Positives = 16/27 (59%)

Query: 35  EIMNSNPGHYVALLATSPTLKSENGLP 61
           EIM+S P H V  LAT P LK    LP
Sbjct: 839 EIMDSGPAHAVVPLATCPHLKEVKPLP 865


>sp|Q9C0Z1|YKM1_SCHPO Uncharacterized transcriptional regulatory protein PB24D3.01
          OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
          GN=SPAPB24D3.01 PE=4 SV=2
          Length = 594

 Score = 29.3 bits (64), Expect = 7.8,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 15 VVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVKQLLRPDDTLLI 74
          +V Q   +  +R+  S SA +  N NP    A+ + SP+   ENG     +L  D T L 
Sbjct: 32 IVYQEECHYSKRLKRSYSATKKKNGNPVLESAIPSLSPSPSIENG---SAMLNSDITSLS 88

Query: 75 GRVYRL 80
           R++++
Sbjct: 89 NRIFKV 94


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.134    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,775,470
Number of Sequences: 539616
Number of extensions: 1110057
Number of successful extensions: 2129
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2128
Number of HSP's gapped (non-prelim): 2
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)