Query 043514
Match_columns 88
No_of_seqs 84 out of 106
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 05:48:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14009 DUF4228: Domain of un 99.9 1.9E-27 4.1E-32 163.1 6.6 78 4-87 1-84 (181)
2 cd00307 RuBisCO_small_like Rib 64.3 6.3 0.00014 26.1 2.2 14 35-48 53-66 (84)
3 PF06483 ChiC: Chitinase C; I 60.4 16 0.00034 27.6 3.9 62 20-81 69-143 (180)
4 PF00101 RuBisCO_small: Ribulo 58.0 9 0.0002 26.0 2.1 13 36-48 68-80 (99)
5 cd03527 RuBisCO_small Ribulose 57.9 9.4 0.0002 26.0 2.2 33 16-48 32-81 (99)
6 PF07593 UnbV_ASPIC: ASPIC and 57.7 7.4 0.00016 24.0 1.5 27 2-30 36-62 (71)
7 cd03063 TRX_Fd_FDH_beta TRX-li 47.1 19 0.00041 23.9 2.3 30 4-37 42-71 (92)
8 CHL00130 rbcS ribulose-1,5-bis 45.0 19 0.00042 26.2 2.2 27 22-48 41-83 (138)
9 PF15631 Imm-NTF2-2: NTF2 fold 44.9 29 0.00062 22.2 2.8 19 12-30 47-65 (66)
10 PF11211 DUF2997: Protein of u 42.3 22 0.00048 21.1 1.9 14 16-29 3-16 (48)
11 PF06572 DUF1131: Protein of u 36.4 11 0.00023 28.2 -0.2 18 64-81 151-168 (171)
12 COG1504 Uncharacterized conser 35.9 15 0.00033 26.2 0.5 18 16-33 23-40 (121)
13 PRK10718 RpoE-regulated lipopr 34.9 16 0.00035 27.8 0.5 18 64-81 171-188 (191)
14 smart00432 MADS MADS domain. 34.7 30 0.00066 21.2 1.7 22 7-30 38-59 (59)
15 PF06145 Corona_NS1: Coronavir 31.9 39 0.00085 18.5 1.6 15 17-31 15-29 (29)
16 cd00265 MADS_MEF2_like MEF2 (m 29.8 58 0.0013 20.6 2.4 27 13-40 42-68 (77)
17 PF11357 Spy1: Cell cycle regu 28.4 26 0.00056 25.1 0.7 12 34-45 115-126 (131)
18 COG4996 Predicted phosphatase 28.3 81 0.0018 23.5 3.2 36 16-51 31-66 (164)
19 PF13098 Thioredoxin_2: Thiore 28.1 81 0.0017 19.5 2.9 25 14-38 85-110 (112)
20 cd02670 Peptidase_C19N A subfa 28.0 49 0.0011 25.2 2.2 12 40-51 181-192 (241)
21 PLN02289 ribulose-bisphosphate 25.7 59 0.0013 24.5 2.2 17 32-48 134-157 (176)
22 KOG3542 cAMP-regulated guanine 24.2 59 0.0013 30.2 2.2 25 14-38 333-364 (1283)
23 TIGR01643 YD_repeat_2x YD repe 23.2 1.1E+02 0.0024 16.2 2.5 16 15-30 8-23 (42)
24 PF04571 Lipin_N: lipin, N-ter 23.1 39 0.00085 23.6 0.8 14 8-23 26-39 (110)
25 PF13174 TPR_6: Tetratricopept 23.1 53 0.0012 15.8 1.1 11 33-43 23-33 (33)
26 PF05862 IceA2: Helicobacter p 22.9 77 0.0017 20.0 2.0 15 15-29 38-52 (59)
27 COG4451 RbcS Ribulose bisphosp 21.6 65 0.0014 23.2 1.6 17 32-48 65-88 (127)
28 cd02980 TRX_Fd_family Thioredo 21.4 95 0.0021 18.3 2.2 28 4-37 44-71 (77)
29 COG3731 SrlB Phosphotransferas 20.4 60 0.0013 23.2 1.3 20 64-83 50-69 (123)
30 PRK07440 hypothetical protein; 20.4 2.2E+02 0.0048 17.4 4.4 21 19-39 8-28 (70)
No 1
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=99.94 E-value=1.9e-27 Score=163.09 Aligned_cols=78 Identities=35% Similarity=0.517 Sum_probs=65.9
Q ss_pred ccchhhh------hheeeeEEcCCCeeEEEeecccHhHHHhhCCCceEEeeecCcCccCCCCcceEEeeCCCCcccCCcE
Q 043514 4 VGNCQAA------EAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVKQLLRPDDTLLIGRV 77 (88)
Q Consensus 4 MGNCqA~------d~a~vvI~Hp~Gkve~~y~~vsA~eVM~~nPGHyVa~~~~~~~~~~~~~~~~~klL~Pdd~L~~G~~ 77 (88)
||||.+. +..+++|+|+||+|++|++|++|+|||..||||||...-. ... -+..+.|+|||+|++|++
T Consensus 1 MGn~~~~~~~~~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P~h~v~~~~~-----~~~-~~~~~~l~~d~~L~~G~~ 74 (181)
T PF14009_consen 1 MGNCVSCCLASSSSAATVKVVHPDGKVEEFKRPVTAAEVMLENPGHFVCDSDS-----FRF-GRRIKPLPPDEELQPGQI 74 (181)
T ss_pred CCCcccccccccCCCceEEEEcCCCcEEEeCCCcCHHHHHHHCCCCEEecccc-----ccC-CCcccCCCccCeecCCCE
Confidence 9999987 8889999999999999999999999999999999964311 001 222379999999999999
Q ss_pred EEEEeccccc
Q 043514 78 YRLISFEGNI 87 (88)
Q Consensus 78 YrLI~~~ev~ 87 (88)
|||+|.+.+.
T Consensus 75 Y~llP~~~~~ 84 (181)
T PF14009_consen 75 YFLLPMSRLQ 84 (181)
T ss_pred EEEEEccccC
Confidence 9999997653
No 2
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=64.30 E-value=6.3 Score=26.05 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=11.2
Q ss_pred HHHhhCCCceEEee
Q 043514 35 EIMNSNPGHYVALL 48 (88)
Q Consensus 35 eVM~~nPGHyVa~~ 48 (88)
+-+++||||||.++
T Consensus 53 ~c~~~~p~~YVRli 66 (84)
T cd00307 53 ACLAEHPGEYVRLI 66 (84)
T ss_pred HHHHHCCCCeEEEE
Confidence 34478999999876
No 3
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=60.36 E-value=16 Score=27.63 Aligned_cols=62 Identities=21% Similarity=0.310 Sum_probs=46.7
Q ss_pred CCCeeEEEeecccHhHHHhhCCCceEEeeecCcC--ccCCCC-------cceE----EeeCCCCcccCCcEEEEE
Q 043514 20 PGNKIERIYWSVSANEIMNSNPGHYVALLATSPT--LKSENG-------LPVK----QLLRPDDTLLIGRVYRLI 81 (88)
Q Consensus 20 p~Gkve~~y~~vsA~eVM~~nPGHyVa~~~~~~~--~~~~~~-------~~~~----klL~Pdd~L~~G~~YrLI 81 (88)
|+|-.-+|--|.||...|+.-.|--+..+..-.. ..+-+| +.++ |-|.|+++..+.-+|+|=
T Consensus 69 PGGt~~~FD~ptSa~~~~kdqSG~g~~vi~sght~~g~NiGGL~gdfHrvs~tlp~wqslapG~s~~~~~~YyLP 143 (180)
T PF06483_consen 69 PGGTEFEFDYPTSAPDNAKDQSGFGLKVISSGHTAAGNNIGGLKGDFHRVSFTLPAWQSLAPGASVELDMVYYLP 143 (180)
T ss_pred CCccEEEEccccCCccccccccCCcEEEEecCCcccCCcccccCCceEEEEEECCCccccCCCCEEEEeEEEEec
Confidence 8899999999999999999999988875532222 111122 3333 789999999999999983
No 4
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=57.95 E-value=9 Score=25.95 Aligned_cols=13 Identities=38% Similarity=0.892 Sum_probs=10.8
Q ss_pred HHhhCCCceEEee
Q 043514 36 IMNSNPGHYVALL 48 (88)
Q Consensus 36 VM~~nPGHyVa~~ 48 (88)
-+++||||||.++
T Consensus 68 c~~~~p~~yVRli 80 (99)
T PF00101_consen 68 CLAEHPGEYVRLI 80 (99)
T ss_dssp HHHHSTTSEEEEE
T ss_pred HHHhCCCceEEEE
Confidence 3478999999886
No 5
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=57.93 E-value=9.4 Score=25.99 Aligned_cols=33 Identities=18% Similarity=0.674 Sum_probs=21.6
Q ss_pred eEEcCC-CeeEEEeecc---------cHhHHH-------hhCCCceEEee
Q 043514 16 VIQHPG-NKIERIYWSV---------SANEIM-------NSNPGHYVALL 48 (88)
Q Consensus 16 vI~Hp~-Gkve~~y~~v---------sA~eVM-------~~nPGHyVa~~ 48 (88)
-|.|.+ ++=.--||.. ++++|| ++||||||.++
T Consensus 32 ~lE~ad~~~~~~~yW~mwklP~f~~~d~~~Vl~ei~~C~~~~p~~YVRli 81 (99)
T cd03527 32 CLEFTEPEHYDNRYWTMWKLPMFGCTDPAQVLREIEACRKAYPDHYVRVV 81 (99)
T ss_pred EEEcccCCCCCCCEEeeccCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 355544 3344446663 567777 68999999876
No 6
>PF07593 UnbV_ASPIC: ASPIC and UnbV; InterPro: IPR011519 This conserved sequence is found associated with IPR001440 from INTERPRO in several paralogous proteins in Rhodopirellula baltica. It is also found associated with IPR000413 from INTERPRO in several eukaryotic integrin-like proteins (e.g. human ASPIC Q9NQ78 from SWISSPROT) and in several other bacterial proteins (e.g. Q84HN1 from SWISSPROT) [].
Probab=57.74 E-value=7.4 Score=23.96 Aligned_cols=27 Identities=11% Similarity=0.377 Sum_probs=20.3
Q ss_pred ccccchhhhhheeeeEEcCCCeeEEEeec
Q 043514 2 LKVGNCQAAEAATVVIQHPGNKIERIYWS 30 (88)
Q Consensus 2 ~~MGNCqA~d~a~vvI~Hp~Gkve~~y~~ 30 (88)
|..|.|..+|.+ +|.=|||+.+++.-+
T Consensus 36 FGLG~~~~v~~v--~V~WP~G~~~~~~~~ 62 (71)
T PF07593_consen 36 FGLGDATSVDSV--EVRWPDGKVQTLENV 62 (71)
T ss_pred EECCCCCCEEEE--EEECCCCCEEEEEcc
Confidence 556776666655 688899999998765
No 7
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=47.11 E-value=19 Score=23.90 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=21.5
Q ss_pred ccchhhhhheeeeEEcCCCeeEEEeecccHhHHH
Q 043514 4 VGNCQAAEAATVVIQHPGNKIERIYWSVSANEIM 37 (88)
Q Consensus 4 MGNCqA~d~a~vvI~Hp~Gkve~~y~~vsA~eVM 37 (88)
||-|..--- |.|+.|+|+ -+|..|++.++=
T Consensus 42 ~G~C~~ePl--V~V~~p~g~--v~Y~~V~~edv~ 71 (92)
T cd03063 42 RGMYWLEPL--VEVETPGGR--VAYGPVTPADVA 71 (92)
T ss_pred ceecCCCCE--EEEEeCCCc--EEEEeCCHHHHH
Confidence 677765433 357779988 699999987653
No 8
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=45.01 E-value=19 Score=26.16 Aligned_cols=27 Identities=19% Similarity=0.564 Sum_probs=21.3
Q ss_pred CeeEEEeecc---------cHhHHH-------hhCCCceEEee
Q 043514 22 NKIERIYWSV---------SANEIM-------NSNPGHYVALL 48 (88)
Q Consensus 22 Gkve~~y~~v---------sA~eVM-------~~nPGHyVa~~ 48 (88)
++....||.. .+++|| ++||+|||.++
T Consensus 41 ~~~~~~YW~MWkLPMFg~tD~~~Vl~Ei~~CrkayP~~yIRl~ 83 (138)
T CHL00130 41 PHPRNSYWELWGLPLFDVKDPAAVMFEINECRKQKPNGYIKVN 83 (138)
T ss_pred CCcCccEEeeeCCccCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5666678875 788888 68999999765
No 9
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=44.85 E-value=29 Score=22.18 Aligned_cols=19 Identities=11% Similarity=0.156 Sum_probs=16.3
Q ss_pred heeeeEEcCCCeeEEEeec
Q 043514 12 AATVVIQHPGNKIERIYWS 30 (88)
Q Consensus 12 ~a~vvI~Hp~Gkve~~y~~ 30 (88)
++.+.|+.-||||.++++.
T Consensus 47 v~~I~I~K~dgkVl~v~H~ 65 (66)
T PF15631_consen 47 VFYIEIRKKDGKVLNVTHT 65 (66)
T ss_pred eEEEEEEccCCeEEEEEec
Confidence 5678899999999999864
No 10
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=42.26 E-value=22 Score=21.09 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=10.1
Q ss_pred eEEcCCCeeEEEee
Q 043514 16 VIQHPGNKIERIYW 29 (88)
Q Consensus 16 vI~Hp~Gkve~~y~ 29 (88)
.+.+|||+|++=--
T Consensus 3 ~~I~~dG~V~~~v~ 16 (48)
T PF11211_consen 3 FTIYPDGRVEEEVE 16 (48)
T ss_pred EEECCCcEEEEEEE
Confidence 35699999987443
No 11
>PF06572 DUF1131: Protein of unknown function (DUF1131); InterPro: IPR010938 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2QZB_B.
Probab=36.41 E-value=11 Score=28.25 Aligned_cols=18 Identities=44% Similarity=0.615 Sum_probs=12.6
Q ss_pred EeeCCCCcccCCcEEEEE
Q 043514 64 QLLRPDDTLLIGRVYRLI 81 (88)
Q Consensus 64 klL~Pdd~L~~G~~YrLI 81 (88)
-||+|||+|.-.++.++|
T Consensus 151 glmPpdd~Lk~wkvskIi 168 (171)
T PF06572_consen 151 GLMPPDDTLKNWKVSKII 168 (171)
T ss_dssp TS---HHHHTT-EEEEEE
T ss_pred CCCCChHHHhhceeeEEE
Confidence 489999999999999987
No 12
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=35.89 E-value=15 Score=26.15 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=14.9
Q ss_pred eEEcCCCeeEEEeecccH
Q 043514 16 VIQHPGNKIERIYWSVSA 33 (88)
Q Consensus 16 vI~Hp~Gkve~~y~~vsA 33 (88)
.+++|||+|++..-++|-
T Consensus 23 Ivi~~dG~v~rr~K~lsk 40 (121)
T COG1504 23 IVIRPDGKVERREKELSK 40 (121)
T ss_pred EEEecCCceehhhhhhhh
Confidence 378999999998877763
No 13
>PRK10718 RpoE-regulated lipoprotein; Provisional
Probab=34.89 E-value=16 Score=27.78 Aligned_cols=18 Identities=39% Similarity=0.482 Sum_probs=16.7
Q ss_pred EeeCCCCcccCCcEEEEE
Q 043514 64 QLLRPDDTLLIGRVYRLI 81 (88)
Q Consensus 64 klL~Pdd~L~~G~~YrLI 81 (88)
-|++|||+|.-++++.+|
T Consensus 171 glmPpdd~Lk~w~vskII 188 (191)
T PRK10718 171 GLMPSDDTLKNWKVSKII 188 (191)
T ss_pred CCCCcHHHHhhcEeeEEE
Confidence 599999999999999987
No 14
>smart00432 MADS MADS domain.
Probab=34.72 E-value=30 Score=21.18 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=15.8
Q ss_pred hhhhhheeeeEEcCCCeeEEEeec
Q 043514 7 CQAAEAATVVIQHPGNKIERIYWS 30 (88)
Q Consensus 7 CqA~d~a~vvI~Hp~Gkve~~y~~ 30 (88)
|++ | ++++|.-|+|++-.+.+|
T Consensus 38 c~~-~-v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 38 CDA-E-VALIVFSPTGKLYEFASP 59 (59)
T ss_pred cCC-e-EEEEEECCCCCeeeccCC
Confidence 664 3 456889999998776554
No 15
>PF06145 Corona_NS1: Coronavirus nonstructural protein NS1; InterPro: IPR009314 One of the members of this family is a 4.9 kDa proteins, encoded by Bovine coronavirus NS1 [].
Probab=31.86 E-value=39 Score=18.49 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=12.6
Q ss_pred EEcCCCeeEEEeecc
Q 043514 17 IQHPGNKIERIYWSV 31 (88)
Q Consensus 17 I~Hp~Gkve~~y~~v 31 (88)
|.||..+|..+-.|+
T Consensus 15 ilhp~nhv~liir~i 29 (29)
T PF06145_consen 15 ILHPFNHVNLIIRPI 29 (29)
T ss_pred ccCcccceeEEEecC
Confidence 789999999887764
No 16
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=29.81 E-value=58 Score=20.58 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=19.9
Q ss_pred eeeeEEcCCCeeEEEeecccHhHHHhhC
Q 043514 13 ATVVIQHPGNKIERIYWSVSANEIMNSN 40 (88)
Q Consensus 13 a~vvI~Hp~Gkve~~y~~vsA~eVM~~n 40 (88)
++++|..|+|++-.+.+| +..+|+..|
T Consensus 42 v~lvv~sp~gk~~~f~s~-s~~~vl~ry 68 (77)
T cd00265 42 VALIIFSSSGKLYEFSSP-SMEKIIERY 68 (77)
T ss_pred eeEEEEcCCCceEEecCC-CHHHHHHHH
Confidence 345788999999887665 458888754
No 17
>PF11357 Spy1: Cell cycle regulatory protein; InterPro: IPR020984 Speedy (Spy1) is a cell cycle regulatory protein which activates CDK2, the major kinase that allows progression through G1/S phase and further replication events. Spy1 expression overcomes a p27-induced cell cycle arrest to allow for DNA synthesis, so cell cycle progression occurs due to an interaction between Spy1 and p27 []. Spy1 is also known as Ringo protein A.
Probab=28.41 E-value=26 Score=25.15 Aligned_cols=12 Identities=42% Similarity=0.772 Sum_probs=11.2
Q ss_pred hHHHhhCCCceE
Q 043514 34 NEIMNSNPGHYV 45 (88)
Q Consensus 34 ~eVM~~nPGHyV 45 (88)
.|||+.+|.|.|
T Consensus 115 EEi~a~~P~hwv 126 (131)
T PF11357_consen 115 EEIQAYDPEHWV 126 (131)
T ss_pred HHHHHhCCcchh
Confidence 699999999987
No 18
>COG4996 Predicted phosphatase [General function prediction only]
Probab=28.31 E-value=81 Score=23.48 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=31.8
Q ss_pred eEEcCCCeeEEEeecccHhHHHhhCCCceEEeeecC
Q 043514 16 VIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATS 51 (88)
Q Consensus 16 vI~Hp~Gkve~~y~~vsA~eVM~~nPGHyVa~~~~~ 51 (88)
.||-..|++-+++.-+.+--.=++|.||.++...+-
T Consensus 31 ~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN 66 (164)
T COG4996 31 TIEDSKGREVHLFPDVKETLKWARNSGYILGLASWN 66 (164)
T ss_pred ceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecC
Confidence 488899999999999999888899999999877543
No 19
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=28.08 E-value=81 Score=19.50 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=17.4
Q ss_pred eeeEEcCCCe-eEEEeecccHhHHHh
Q 043514 14 TVVIQHPGNK-IERIYWSVSANEIMN 38 (88)
Q Consensus 14 ~vvI~Hp~Gk-ve~~y~~vsA~eVM~ 38 (88)
++++...+|+ |.++.+.+++.|+.+
T Consensus 85 t~~~~d~~G~~v~~~~G~~~~~~l~~ 110 (112)
T PF13098_consen 85 TIVFLDKDGKIVYRIPGYLSPEELLK 110 (112)
T ss_dssp EEEECTTTSCEEEEEESS--HHHHHH
T ss_pred EEEEEcCCCCEEEEecCCCCHHHHHh
Confidence 3466667788 668999999988875
No 20
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=27.98 E-value=49 Score=25.15 Aligned_cols=12 Identities=42% Similarity=0.803 Sum_probs=9.8
Q ss_pred CCCceEEeeecC
Q 043514 40 NPGHYVALLATS 51 (88)
Q Consensus 40 nPGHyVa~~~~~ 51 (88)
+-|||+|.+...
T Consensus 181 ~sGHYva~vr~~ 192 (241)
T cd02670 181 ETGHYVAFVRYG 192 (241)
T ss_pred CCcCeEEEEECC
Confidence 899999988543
No 21
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=25.73 E-value=59 Score=24.55 Aligned_cols=17 Identities=6% Similarity=0.585 Sum_probs=14.3
Q ss_pred cHhHHH-------hhCCCceEEee
Q 043514 32 SANEIM-------NSNPGHYVALL 48 (88)
Q Consensus 32 sA~eVM-------~~nPGHyVa~~ 48 (88)
.+++|| ++||+|||.++
T Consensus 134 D~~~Vl~Ei~eC~kayP~~yIRii 157 (176)
T PLN02289 134 DSAQVLKELEEAKKAYPNAFIRII 157 (176)
T ss_pred CHHHHHHHHHHHHHHCCcceEEEE
Confidence 678888 68999999865
No 22
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=24.20 E-value=59 Score=30.17 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=18.9
Q ss_pred eeeEEcCCCeeEEEee-------cccHhHHHh
Q 043514 14 TVVIQHPGNKIERIYW-------SVSANEIMN 38 (88)
Q Consensus 14 ~vvI~Hp~Gkve~~y~-------~vsA~eVM~ 38 (88)
+|.|+||+||.|+|.- |..+-|.|.
T Consensus 333 ~VEv~~PdGk~e~l~mGnSFG~~PT~dkqym~ 364 (1283)
T KOG3542|consen 333 CVEVVKPDGKREELKMGNSFGAEPTPDKQYMI 364 (1283)
T ss_pred eEEEecCCCceEEeecccccCCCCCcchhhhh
Confidence 6789999999999974 455556554
No 23
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=23.24 E-value=1.1e+02 Score=16.20 Aligned_cols=16 Identities=6% Similarity=0.048 Sum_probs=12.9
Q ss_pred eeEEcCCCeeEEEeec
Q 043514 15 VVIQHPGNKIERIYWS 30 (88)
Q Consensus 15 vvI~Hp~Gkve~~y~~ 30 (88)
+.+..|+|++.+|.+-
T Consensus 8 ~~~~~p~G~~~~~~YD 23 (42)
T TIGR01643 8 TGSTDADGTTTRYTYD 23 (42)
T ss_pred EEEECCCCCEEEEEEC
Confidence 4578899999998874
No 24
>PF04571 Lipin_N: lipin, N-terminal conserved region; InterPro: IPR007651 Mutations in the lipin gene lead to fatty liver dystrophy in mice. The protein has been shown to be phosphorylated by the TOR Ser/Thr protein kinases in response to insulin stimulation. This entry represents a conserved domain found at the N terminus of the member proteins [, ].
Probab=23.14 E-value=39 Score=23.61 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=11.4
Q ss_pred hhhhheeeeEEcCCCe
Q 043514 8 QAAEAATVVIQHPGNK 23 (88)
Q Consensus 8 qA~d~a~vvI~Hp~Gk 23 (88)
+|+|.+ +|+||||.
T Consensus 26 GAiDVI--VV~q~DGs 39 (110)
T PF04571_consen 26 GAIDVI--VVEQPDGS 39 (110)
T ss_pred CceeEE--EEecCCCC
Confidence 578876 79999995
No 25
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=23.11 E-value=53 Score=15.78 Aligned_cols=11 Identities=9% Similarity=0.329 Sum_probs=7.9
Q ss_pred HhHHHhhCCCc
Q 043514 33 ANEIMNSNPGH 43 (88)
Q Consensus 33 A~eVM~~nPGH 43 (88)
..++++.||+|
T Consensus 23 ~~~~~~~~P~s 33 (33)
T PF13174_consen 23 FQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHSTTS
T ss_pred HHHHHHHCcCC
Confidence 36778888875
No 26
>PF05862 IceA2: Helicobacter pylori IceA2 protein; InterPro: IPR008655 This family consists of several Helicobacter pylori specific IceA2 proteins. The function of this family is unknown.
Probab=22.90 E-value=77 Score=20.05 Aligned_cols=15 Identities=20% Similarity=0.133 Sum_probs=11.1
Q ss_pred eeEEcCCCeeEEEee
Q 043514 15 VVIQHPGNKIERIYW 29 (88)
Q Consensus 15 vvI~Hp~Gkve~~y~ 29 (88)
|-+.-.+||||||.-
T Consensus 38 VA~~ta~GkveeY~n 52 (59)
T PF05862_consen 38 VAAVTANGKVEEYKN 52 (59)
T ss_pred EEEEecCCceeeeec
Confidence 456668899999863
No 27
>COG4451 RbcS Ribulose bisphosphate carboxylase small subunit [Energy production and conversion]
Probab=21.59 E-value=65 Score=23.18 Aligned_cols=17 Identities=35% Similarity=0.919 Sum_probs=13.4
Q ss_pred cHhHHH-------hhCCCceEEee
Q 043514 32 SANEIM-------NSNPGHYVALL 48 (88)
Q Consensus 32 sA~eVM-------~~nPGHyVa~~ 48 (88)
+|.||| ++|||+||.++
T Consensus 65 ~~~evlaele~Cr~dhp~eYIRli 88 (127)
T COG4451 65 TAGEVLAELEACRADHPGEYIRLI 88 (127)
T ss_pred chHHHHHHHHHHHHhCCCCeEEEE
Confidence 566666 57999999876
No 28
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=21.44 E-value=95 Score=18.30 Aligned_cols=28 Identities=21% Similarity=0.438 Sum_probs=17.1
Q ss_pred ccchhhhhheeeeEEcCCCeeEEEeecccHhHHH
Q 043514 4 VGNCQAAEAATVVIQHPGNKIERIYWSVSANEIM 37 (88)
Q Consensus 4 MGNCqA~d~a~vvI~Hp~Gkve~~y~~vsA~eVM 37 (88)
||+|...-.+ ++.|+| .+|..+++.++.
T Consensus 44 lg~C~~~P~v---~i~~~~---~~y~~v~~~~~~ 71 (77)
T cd02980 44 LGACGLAPVV---VVYPDG---VWYGRVTPEDVE 71 (77)
T ss_pred cCcccCCCEE---EEeCCC---eEEccCCHHHHH
Confidence 7888554333 344655 478888776553
No 29
>COG3731 SrlB Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]
Probab=20.43 E-value=60 Score=23.23 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.5
Q ss_pred EeeCCCCcccCCcEEEEEec
Q 043514 64 QLLRPDDTLLIGRVYRLISF 83 (88)
Q Consensus 64 klL~Pdd~L~~G~~YrLI~~ 83 (88)
.-|.|+|.|.+|+.-+.|++
T Consensus 50 ~~l~~G~~l~lg~~~y~Ita 69 (123)
T COG3731 50 EALQPGDRLTLGGHCYPITA 69 (123)
T ss_pred ccCCCCCEEEECCceEEEEE
Confidence 45779999999988888875
No 30
>PRK07440 hypothetical protein; Provisional
Probab=20.42 E-value=2.2e+02 Score=17.44 Aligned_cols=21 Identities=5% Similarity=0.072 Sum_probs=18.5
Q ss_pred cCCCeeEEEeecccHhHHHhh
Q 043514 19 HPGNKIERIYWSVSANEIMNS 39 (88)
Q Consensus 19 Hp~Gkve~~y~~vsA~eVM~~ 39 (88)
.-||+..++..+.|.++++++
T Consensus 8 ~vNG~~~~~~~~~tl~~lL~~ 28 (70)
T PRK07440 8 QVNGETRTCSSGTSLPDLLQQ 28 (70)
T ss_pred EECCEEEEcCCCCCHHHHHHH
Confidence 459999999999999999974
Done!