Query 043514
Match_columns 88
No_of_seqs 84 out of 106
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 09:37:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zxw_B Ribulose bisphosphate c 63.7 7.3 0.00025 26.4 3.5 44 32-79 65-117 (118)
2 1m2d_A [2Fe-2S] ferredoxin; th 57.0 8.1 0.00028 24.4 2.7 28 4-37 56-83 (110)
3 3ro2_B Peptide of nuclear mito 56.1 2.7 9.3E-05 22.2 0.2 8 2-9 4-11 (28)
4 3p57_A Myocyte-specific enhanc 54.9 9.4 0.00032 24.6 2.7 31 7-40 38-68 (90)
5 2kmm_A Guanosine-3',5'-BIS(dip 47.6 36 0.0012 19.1 4.4 25 16-40 4-28 (73)
6 1rbl_M Ribulose 1,5 bisphospha 47.3 12 0.0004 25.0 2.3 34 15-48 39-89 (109)
7 1svd_M Ribulose bisphosphate c 46.8 12 0.0004 25.0 2.3 33 16-48 42-91 (110)
8 3or8_A Transcription elongatio 39.6 26 0.0009 25.2 3.4 59 16-80 5-76 (197)
9 2qzb_A Uncharacterized protein 37.9 7.3 0.00025 27.9 0.1 18 64-81 146-163 (166)
10 4f0h_B Ribulose bisphosphate c 37.8 19 0.00065 25.0 2.3 33 16-48 34-83 (138)
11 1wdd_S Ribulose bisphosphate c 36.8 21 0.00071 24.5 2.3 17 32-48 78-101 (128)
12 1mnm_A Protein (MCM1 transcrip 36.8 13 0.00046 24.4 1.3 30 13-43 58-87 (100)
13 1bwv_S Rubisco, protein (ribul 36.6 21 0.00071 24.8 2.3 33 16-48 34-83 (138)
14 1bxn_I Rubisco, protein (ribul 35.8 21 0.00072 24.8 2.3 33 16-48 34-83 (139)
15 1zzo_A RV1677; thioredoxin fol 35.5 45 0.0015 19.4 3.5 25 14-38 104-128 (136)
16 1egw_A MADS box transcription 33.1 36 0.0012 21.0 2.8 26 14-40 43-68 (77)
17 1lu4_A Soluble secreted antige 30.3 52 0.0018 19.2 3.2 25 14-38 102-129 (136)
18 1gk8_I Ribulose bisphosphate c 26.9 38 0.0013 23.6 2.3 17 32-48 85-108 (140)
19 1wln_A Afadin; beta sandwich, 25.9 43 0.0015 21.2 2.3 26 60-85 87-116 (120)
20 3qx1_A FAS-associated factor 1 23.3 69 0.0023 19.0 2.8 29 9-37 4-34 (84)
21 2dzk_A UBX domain-containing p 22.6 70 0.0024 20.2 2.9 26 11-36 12-39 (109)
22 3hxs_A Thioredoxin, TRXP; elec 21.9 86 0.0029 18.8 3.1 25 14-38 108-132 (141)
23 4ejq_A Kinesin-like protein KI 20.5 29 0.00099 23.3 0.7 27 59-85 116-146 (154)
24 3u7z_A Putative metal binding 20.4 1.1E+02 0.0039 19.6 3.6 31 11-41 7-40 (101)
No 1
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=63.69 E-value=7.3 Score=26.40 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=19.5
Q ss_pred cHhHHH-------hhCCCceEEeeecCcCccCCCCcceE--EeeCCCCcccCCcEEE
Q 043514 32 SANEIM-------NSNPGHYVALLATSPTLKSENGLPVK--QLLRPDDTLLIGRVYR 79 (88)
Q Consensus 32 sA~eVM-------~~nPGHyVa~~~~~~~~~~~~~~~~~--klL~Pdd~L~~G~~Yr 79 (88)
.++||| ++||||||.++-- ++....+.. -+=||++.=-.+..||
T Consensus 65 d~~~Vl~Ele~C~k~~p~~yVRliGf----D~~~q~q~~sfIv~RP~~~~pg~~~~r 117 (118)
T 3zxw_B 65 NAQDVLNEVQQCRSEYPNCFIRVVAF----DNIKQCQVMSFIVYKPNQANSGYSGYR 117 (118)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEEEE----ETTTTEEEEEEEEECC-----------
T ss_pred CHHHHHHHHHHHHHHCCCceEEEEEE----eCCcCEEEEEEEEECCCCCCCCCCccc
Confidence 456665 5699999987621 122223433 4668877655555454
No 2
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=57.04 E-value=8.1 Score=24.40 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=18.1
Q ss_pred ccchhhhhheeeeEEcCCCeeEEEeecccHhHHH
Q 043514 4 VGNCQAAEAATVVIQHPGNKIERIYWSVSANEIM 37 (88)
Q Consensus 4 MGNCqA~d~a~vvI~Hp~Gkve~~y~~vsA~eVM 37 (88)
||+|...=. +++.||| .+|..++..+|-
T Consensus 56 lG~C~~gP~---v~V~P~~---~~y~~vt~e~v~ 83 (110)
T 1m2d_A 56 MNASMMGPV---VVVYPDG---VWYGQVKPEDVD 83 (110)
T ss_dssp CSCGGGCSC---EEEETTT---EEECSCCGGGHH
T ss_pred CCccCCCCE---EEEEeCC---EEEecCCHHHHH
Confidence 789964333 3444998 578888776553
No 3
>3ro2_B Peptide of nuclear mitotic apparatus protein 1; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Homo sapiens}
Probab=56.07 E-value=2.7 Score=22.15 Aligned_cols=8 Identities=38% Similarity=0.937 Sum_probs=6.7
Q ss_pred ccccchhh
Q 043514 2 LKVGNCQA 9 (88)
Q Consensus 2 ~~MGNCqA 9 (88)
++||.||-
T Consensus 4 ~ymgtcqd 11 (28)
T 3ro2_B 4 FYMGTCQD 11 (28)
T ss_dssp CCCCSCCC
T ss_pred eeeccccC
Confidence 68999993
No 4
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=54.92 E-value=9.4 Score=24.61 Aligned_cols=31 Identities=16% Similarity=0.330 Sum_probs=23.2
Q ss_pred hhhhhheeeeEEcCCCeeEEEeecccHhHHHhhC
Q 043514 7 CQAAEAATVVIQHPGNKIERIYWSVSANEIMNSN 40 (88)
Q Consensus 7 CqA~d~a~vvI~Hp~Gkve~~y~~vsA~eVM~~n 40 (88)
|.| | ++++|..|+|++-+|.. -+..+|+..|
T Consensus 38 Cda-~-Valiifs~~gk~~~f~s-~~~~~il~rY 68 (90)
T 3p57_A 38 CDC-E-IALIIFNSSNKLFQYAS-TDMDKVLLKY 68 (90)
T ss_dssp HTC-E-EEEEEECTTCCEEEEES-SCHHHHHHHH
T ss_pred cCC-c-eEEEEECCCCCEEEeCC-CCHHHHHHHH
Confidence 554 3 45678899999988654 5888998876
No 5
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=47.56 E-value=36 Score=19.14 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=20.6
Q ss_pred eEEcCCCeeEEEeecccHhHHHhhC
Q 043514 16 VIQHPGNKIERIYWSVSANEIMNSN 40 (88)
Q Consensus 16 vI~Hp~Gkve~~y~~vsA~eVM~~n 40 (88)
.|.=|||++.++....|+.++.++.
T Consensus 4 ~i~~p~g~~~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 4 MVFTPKGEIKRLPQGATALDFAYSL 28 (73)
T ss_dssp EEECTTCCEEEECTTCBHHHHHHHH
T ss_pred EEEcCCCCEEEcCCCCcHHHHHHHH
Confidence 4455899999999999999998764
No 6
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=47.33 E-value=12 Score=25.00 Aligned_cols=34 Identities=15% Similarity=0.510 Sum_probs=24.5
Q ss_pred eeEEcCC-CeeEEEeecc---------cHhHHHh-------hCCCceEEee
Q 043514 15 VVIQHPG-NKIERIYWSV---------SANEIMN-------SNPGHYVALL 48 (88)
Q Consensus 15 vvI~Hp~-Gkve~~y~~v---------sA~eVM~-------~nPGHyVa~~ 48 (88)
+-|.|.+ ++..--||.. +++|||+ +||||||.++
T Consensus 39 p~lEf~d~~~~~~~yW~mwklPmf~~~d~~~Vl~Ele~C~k~~p~~yVRli 89 (109)
T 1rbl_M 39 PLIEFNEHSNPEEFYWTMWKLPLFACAAPQQVLDEVRECRSEYGDCYIRVA 89 (109)
T ss_dssp EEEEEESCCCTTCCCCEECSSCCTTCCCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred EEEEeccCccccccEEeecccCCcCCCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 3456643 6666678874 6788875 7999999876
No 7
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=46.77 E-value=12 Score=25.03 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=22.0
Q ss_pred eEEcCC-CeeEEEeecc---------cHhHHHh-------hCCCceEEee
Q 043514 16 VIQHPG-NKIERIYWSV---------SANEIMN-------SNPGHYVALL 48 (88)
Q Consensus 16 vI~Hp~-Gkve~~y~~v---------sA~eVM~-------~nPGHyVa~~ 48 (88)
-|.|.+ ++..--||.. ++++||+ +||||||.++
T Consensus 42 ~iEf~d~~~~~~~yW~mwklPmf~~~d~~~Vl~El~~C~k~~p~~yVRli 91 (110)
T 1svd_M 42 GIEHVEVKNSMNQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLV 91 (110)
T ss_dssp EEEEECGGGTTCSCCEEESCCCTTCCCHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred EEEeccCCccCCcEEeecccCCcCCCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 355533 4444556664 5778775 7999999876
No 8
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES; 1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A 2l3t_A 3gxw_A 3gxx_A
Probab=39.60 E-value=26 Score=25.18 Aligned_cols=59 Identities=17% Similarity=0.359 Sum_probs=29.8
Q ss_pred eEEcCCCeeEEEeecccHhHHHhhCCCceEEeeecCcCccCCCCcce-----------EEe--eCCCCcccCCcEEEE
Q 043514 16 VIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPV-----------KQL--LRPDDTLLIGRVYRL 80 (88)
Q Consensus 16 vI~Hp~Gkve~~y~~vsA~eVM~~nPGHyVa~~~~~~~~~~~~~~~~-----------~kl--L~Pdd~L~~G~~YrL 80 (88)
+|.||. +.+++..|.++.=-..-+++++.+|.++..+.+.+ +.+ +.-+..+.+|+.+++
T Consensus 5 vI~HP~------F~n~~~~qAe~~L~~~~~Ge~iIRPSSkg~dhLtvTwKv~d~v~qHidI~E~~K~~~~slG~~L~i 76 (197)
T 3or8_A 5 VINHPY------YFPFNGKQAEDYLRSKERGDFVIRQSSRGDDHLAITWKLDKDLFQHVDIQELEKENPLALGKVLVV 76 (197)
T ss_dssp CCCCTT------EECCCHHHHHHHHTTSCTTCEEEEECSSCTTEEEEEEEEETTEEEEEEEEEESCSSTTSCCSEEEE
T ss_pred ccCCCC------cCCCCHHHHHHHHhcCCCCCEEEeeCCCCCCcEEEEEEECCCcEEEEEEEEcCCccccccCceEEE
Confidence 578886 55666544333211122344445666654432222 223 344445788887765
No 9
>2qzb_A Uncharacterized protein YFEY; structural genomics, unknown function, PSI-2, protein struct initiative; 2.10A {Escherichia coli}
Probab=37.85 E-value=7.3 Score=27.93 Aligned_cols=18 Identities=39% Similarity=0.482 Sum_probs=16.7
Q ss_pred EeeCCCCcccCCcEEEEE
Q 043514 64 QLLRPDDTLLIGRVYRLI 81 (88)
Q Consensus 64 klL~Pdd~L~~G~~YrLI 81 (88)
-+++|||+|.-.++..+|
T Consensus 146 glmPpdd~Lk~w~vskII 163 (166)
T 2qzb_A 146 GLMPSDDTLKNWKVSKII 163 (166)
T ss_dssp TSCCCHHHHTTCEEEEEE
T ss_pred CCCCChHHHhhcEeeEEE
Confidence 499999999999999987
No 10
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=37.81 E-value=19 Score=25.02 Aligned_cols=33 Identities=9% Similarity=0.398 Sum_probs=22.5
Q ss_pred eEEcCC-CeeEEEeecc---------cHhHHH-------hhCCCceEEee
Q 043514 16 VIQHPG-NKIERIYWSV---------SANEIM-------NSNPGHYVALL 48 (88)
Q Consensus 16 vI~Hp~-Gkve~~y~~v---------sA~eVM-------~~nPGHyVa~~ 48 (88)
-|.|.+ ++..--||.. .+++|| ++||||||.++
T Consensus 34 ~iEf~d~~~~r~~yW~mWkLPmFg~~d~~~Vl~Ele~C~k~~p~~YVRli 83 (138)
T 4f0h_B 34 GIEYTNDIHPRNSFWEMWGLPLFEVTDPAPVLFEINACRKAKSNFYIKVV 83 (138)
T ss_dssp EEEEESCCCTTCCCCEESSCCBCSCCSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred EEEeCCCCCCcCCEEeecCCCCcCCCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 355544 4455567775 577777 46999999876
No 11
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=36.77 E-value=21 Score=24.50 Aligned_cols=17 Identities=18% Similarity=0.626 Sum_probs=13.6
Q ss_pred cHhHHHh-------hCCCceEEee
Q 043514 32 SANEIMN-------SNPGHYVALL 48 (88)
Q Consensus 32 sA~eVM~-------~nPGHyVa~~ 48 (88)
.++|||+ +||+|||.++
T Consensus 78 d~~~Vl~El~~C~k~~P~~YVRli 101 (128)
T 1wdd_S 78 DATQVLKELEEAKKAYPDAFVRII 101 (128)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4677764 7999999876
No 12
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=36.77 E-value=13 Score=24.36 Aligned_cols=30 Identities=7% Similarity=0.098 Sum_probs=23.0
Q ss_pred eeeeEEcCCCeeEEEeecccHhHHHhhCCCc
Q 043514 13 ATVVIQHPGNKIERIYWSVSANEIMNSNPGH 43 (88)
Q Consensus 13 a~vvI~Hp~Gkve~~y~~vsA~eVM~~nPGH 43 (88)
++++|..|+||+-+|..| +..+|+.++.|-
T Consensus 58 Valivfs~~gk~~~f~sp-s~~~il~r~~G~ 87 (100)
T 1mnm_A 58 VLLLVVSETGLVYTFSTP-KFEPIVTQQEGR 87 (100)
T ss_dssp EEEEEECTTCCEEEEECT-TTTHHHHSHHHH
T ss_pred EEEEEecCCCCcceecCC-CHHHHHHHhhCC
Confidence 346778999999998877 778888766553
No 13
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=36.62 E-value=21 Score=24.79 Aligned_cols=33 Identities=12% Similarity=0.411 Sum_probs=22.8
Q ss_pred eEEcCC-CeeEEEeecc---------cHhHHHh-------hCCCceEEee
Q 043514 16 VIQHPG-NKIERIYWSV---------SANEIMN-------SNPGHYVALL 48 (88)
Q Consensus 16 vI~Hp~-Gkve~~y~~v---------sA~eVM~-------~nPGHyVa~~ 48 (88)
-|.|.+ ++..--||.. .+++||+ +||||||.++
T Consensus 34 ~iEf~d~~~~r~~yW~mWkLPmF~~td~~~Vl~Ele~C~k~~p~~YVRli 83 (138)
T 1bwv_S 34 GIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNFYIKVV 83 (138)
T ss_dssp EEEEESCCCTTCCCCEECSSCBCSCCCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred eEEecCCCCCccCEEeccCCCCcCCCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 355543 5555567774 6788875 7999999876
No 14
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=35.76 E-value=21 Score=24.76 Aligned_cols=33 Identities=21% Similarity=0.504 Sum_probs=22.9
Q ss_pred eEEcCC-CeeEEEeecc---------cHhHHHh-------hCCCceEEee
Q 043514 16 VIQHPG-NKIERIYWSV---------SANEIMN-------SNPGHYVALL 48 (88)
Q Consensus 16 vI~Hp~-Gkve~~y~~v---------sA~eVM~-------~nPGHyVa~~ 48 (88)
-|.|.+ ++..--||.. .+++||+ +||||||.++
T Consensus 34 ~lE~~d~~~~r~~yW~mWkLPmF~~td~~~Vl~Ele~C~k~~p~~YVRli 83 (139)
T 1bxn_I 34 GLEYTDDPHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPNHYIRVT 83 (139)
T ss_dssp EEEEESCCCTTCCCCEESSSCBTTCCCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred EEEeccCCccccCEEeecCCCCcCCCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 355532 5555567774 6788875 7999999876
No 15
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=35.54 E-value=45 Score=19.36 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=18.7
Q ss_pred eeeEEcCCCeeEEEeecccHhHHHh
Q 043514 14 TVVIQHPGNKIERIYWSVSANEIMN 38 (88)
Q Consensus 14 ~vvI~Hp~Gkve~~y~~vsA~eVM~ 38 (88)
++.|..++|++.++....+..++.+
T Consensus 104 ~~~~id~~g~i~~~~g~~~~~~l~~ 128 (136)
T 1zzo_A 104 AYAFVDPHGNVDVVRGRMSQDELTR 128 (136)
T ss_dssp EEEEECTTCCEEEEESCCCHHHHHH
T ss_pred eEEEECCCCCEEEEecCCCHHHHHH
Confidence 4567889999987777777766543
No 16
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=33.08 E-value=36 Score=21.00 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=20.1
Q ss_pred eeeEEcCCCeeEEEeecccHhHHHhhC
Q 043514 14 TVVIQHPGNKIERIYWSVSANEIMNSN 40 (88)
Q Consensus 14 ~vvI~Hp~Gkve~~y~~vsA~eVM~~n 40 (88)
+++|..|+||.-+|.. -+..+++..|
T Consensus 43 ~livfs~~gk~~~~~s-~~~~~il~ry 68 (77)
T 1egw_A 43 ALIIFNSSNKLFQYAS-TDMDKVLLKY 68 (77)
T ss_dssp EEEEECTTCCEEEEES-SCHHHHHHHH
T ss_pred EEEEECCCCCEeeCCC-CCHHHHHHHH
Confidence 4577789999998864 4788888765
No 17
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=30.32 E-value=52 Score=19.20 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=18.3
Q ss_pred eeeEEcCCCeeEEEe---ecccHhHHHh
Q 043514 14 TVVIQHPGNKIERIY---WSVSANEIMN 38 (88)
Q Consensus 14 ~vvI~Hp~Gkve~~y---~~vsA~eVM~ 38 (88)
++.|..++|++.++. ...+..++.+
T Consensus 102 ~~~lid~~G~i~~~~~~~g~~~~~~l~~ 129 (136)
T 1lu4_A 102 AFVFYRADGTSTFVNNPTAAMSQDELSG 129 (136)
T ss_dssp EEEEECTTSCEEEECCSSSCCCHHHHHH
T ss_pred EEEEECCCCcEEEEEcCCCccCHHHHHH
Confidence 456778999999666 6677777654
No 18
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=26.94 E-value=38 Score=23.56 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=13.9
Q ss_pred cHhHHHh-------hCCCceEEee
Q 043514 32 SANEIMN-------SNPGHYVALL 48 (88)
Q Consensus 32 sA~eVM~-------~nPGHyVa~~ 48 (88)
.++|||+ +|||+||.++
T Consensus 85 d~~qVl~El~~C~k~~P~~YVRli 108 (140)
T 1gk8_I 85 DPMQVLREIVACTKAFPDAYVRLV 108 (140)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 5777775 7999999876
No 19
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=25.90 E-value=43 Score=21.16 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=18.3
Q ss_pred cceE--EeeCCCCcccCCc--EEEEEeccc
Q 043514 60 LPVK--QLLRPDDTLLIGR--VYRLISFEG 85 (88)
Q Consensus 60 ~~~~--klL~Pdd~L~~G~--~YrLI~~~e 85 (88)
.++. ..|+++|.+.+|. .|++....|
T Consensus 87 ~~i~~~~~L~~GD~I~iG~~~~~~f~~p~~ 116 (120)
T 1wln_A 87 QRISETTMLQSGMRLQFGTSHVFKFVDPSG 116 (120)
T ss_dssp CBCSSCEEECTTCEEEETTTEEEEEECSSC
T ss_pred EEcCCCEECCCCCEEEECCceEEEEECCcc
Confidence 4444 5899999999998 555554433
No 20
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=23.29 E-value=69 Score=18.99 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=20.9
Q ss_pred hhhheeeeEEcCCCe--eEEEeecccHhHHH
Q 043514 9 AAEAATVVIQHPGNK--IERIYWSVSANEIM 37 (88)
Q Consensus 9 A~d~a~vvI~Hp~Gk--ve~~y~~vsA~eVM 37 (88)
+.+..++.|.-|||+ +.++...-+.++|-
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~ 34 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVF 34 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHH
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHH
Confidence 345678899999996 56777777776553
No 21
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=22.55 E-value=70 Score=20.25 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=18.8
Q ss_pred hheeeeEEcCCCe--eEEEeecccHhHH
Q 043514 11 EAATVVIQHPGNK--IERIYWSVSANEI 36 (88)
Q Consensus 11 d~a~vvI~Hp~Gk--ve~~y~~vsA~eV 36 (88)
+..++.|..|||+ +.+|...-+.++|
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v 39 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEA 39 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHH
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHH
Confidence 4678999999998 5566665566555
No 22
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=21.91 E-value=86 Score=18.81 Aligned_cols=25 Identities=8% Similarity=-0.015 Sum_probs=19.6
Q ss_pred eeeEEcCCCeeEEEeecccHhHHHh
Q 043514 14 TVVIQHPGNKIERIYWSVSANEIMN 38 (88)
Q Consensus 14 ~vvI~Hp~Gkve~~y~~vsA~eVM~ 38 (88)
++.+..++|++.++....+..++.+
T Consensus 108 t~~~~~~~g~~~~~~G~~~~~~l~~ 132 (141)
T 3hxs_A 108 TIWFVPMKGEPQVNMGALSKEQLKG 132 (141)
T ss_dssp EEEEECSSSCCEEEESCCCHHHHHH
T ss_pred EEEEEeCCCCEEEEeCCCCHHHHHH
Confidence 4567789999999888888876643
No 23
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=20.51 E-value=29 Score=23.30 Aligned_cols=27 Identities=30% Similarity=0.618 Sum_probs=19.3
Q ss_pred CcceE--EeeCCCCcccCCc--EEEEEeccc
Q 043514 59 GLPVK--QLLRPDDTLLIGR--VYRLISFEG 85 (88)
Q Consensus 59 ~~~~~--klL~Pdd~L~~G~--~YrLI~~~e 85 (88)
|.++. ..|+.+|.+.+|+ +||..-.+|
T Consensus 116 G~~i~~~~~L~~GD~I~~G~~~~Frf~~P~~ 146 (154)
T 4ejq_A 116 GKKVTEPSILRSGNRIIMGKSHVFRFNHPEQ 146 (154)
T ss_dssp TEECCSCEECCTTCEEEETTTEEEEEECHHH
T ss_pred CEEcCCceECCCCCEEEECCcEEEEEcChHH
Confidence 44554 5899999999996 567664443
No 24
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=20.38 E-value=1.1e+02 Score=19.64 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=24.6
Q ss_pred hheeeeEEcCCCeeEEEeecc---cHhHHHhhCC
Q 043514 11 EAATVVIQHPGNKIERIYWSV---SANEIMNSNP 41 (88)
Q Consensus 11 d~a~vvI~Hp~Gkve~~y~~v---sA~eVM~~nP 41 (88)
.-++|.|++++|....|.-.- +..++|+++.
T Consensus 7 k~i~i~v~~~~~~~~~~~v~t~g~tL~dvLk~~~ 40 (101)
T 3u7z_A 7 KHITVTVIHGDQTENVFEFDTDAKYLGEVLESEN 40 (101)
T ss_dssp EEEEEEEECTTSCEEEEEEEECCSBHHHHHHHTT
T ss_pred eEEEEEEEcCCCceeEEEEcCCccHHHHHHHHcC
Confidence 457899999999999887652 2468999988
Done!