Query 043514
Match_columns 88
No_of_seqs 84 out of 106
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 09:37:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043514.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043514hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1svdm1 d.73.1.1 (M:3-110) Rib 53.5 3.7 0.00027 25.9 2.3 12 37-48 78-89 (108)
2 d1rbli_ d.73.1.1 (I:) Ribulose 52.3 3.8 0.00028 25.8 2.2 17 32-48 66-89 (109)
3 d1egwa_ d.88.1.1 (A:) Myocyte 51.6 5.9 0.00043 22.9 2.8 27 13-40 42-68 (71)
4 d1tkea1 d.15.10.1 (A:1-62) Thr 49.4 5.2 0.00038 22.0 2.2 24 16-39 3-26 (62)
5 d1bxni_ d.73.1.1 (I:) Ribulose 48.4 4.9 0.00035 26.0 2.3 17 32-48 60-83 (129)
6 d1wdds_ d.73.1.1 (S:) Ribulose 41.8 7.3 0.00053 24.9 2.3 17 32-48 78-101 (122)
7 d2icsa1 b.92.1.8 (A:4-54,A:322 40.6 8.5 0.00062 23.7 2.4 59 20-78 22-99 (101)
8 d1bwvs_ d.73.1.1 (S:) Ribulose 37.8 9.1 0.00066 25.0 2.3 18 31-48 59-83 (138)
9 d1nyra2 d.15.10.1 (A:4-62) Thr 35.7 3.3 0.00024 22.8 -0.2 24 16-39 2-25 (59)
10 d1mnma_ d.88.1.1 (A:) MCM1 tra 34.8 13 0.00092 22.2 2.5 29 13-42 44-72 (85)
11 d1gk8i_ d.73.1.1 (I:) Ribulose 32.6 13 0.00093 24.0 2.3 18 31-48 84-108 (126)
12 d1m2da_ c.47.1.11 (A:) Thiored 32.2 15 0.0011 21.5 2.5 28 4-37 54-81 (101)
13 d1srsa_ d.88.1.1 (A:) Serum re 31.1 18 0.0013 21.5 2.7 29 13-42 44-72 (84)
14 d2h9fa2 d.21.1.4 (A:187-395) H 25.8 12 0.00089 25.4 1.4 16 11-26 157-172 (209)
15 d1wfza_ d.224.1.2 (A:) Iron-su 25.0 24 0.0018 22.0 2.7 23 7-31 33-56 (130)
16 d1wp0a1 c.47.1.10 (A:138-297) 24.3 36 0.0026 19.3 3.3 20 14-33 126-145 (160)
17 d1zzoa1 c.47.1.10 (A:45-178) L 24.0 41 0.003 19.1 3.5 25 14-38 104-128 (134)
18 d1c3ga2 b.4.1.1 (A:260-349) He 22.7 40 0.0029 19.0 3.2 35 7-47 18-52 (90)
19 d1diva1 d.99.1.1 (A:56-149) Ri 21.6 28 0.0021 20.3 2.3 31 9-39 16-46 (94)
20 d2uyzb1 d.15.1.1 (B:20-96) SUM 21.1 33 0.0024 18.7 2.5 31 11-41 1-33 (77)
No 1
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]}
Probab=53.50 E-value=3.7 Score=25.86 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=10.1
Q ss_pred HhhCCCceEEee
Q 043514 37 MNSNPGHYVALL 48 (88)
Q Consensus 37 M~~nPGHyVa~~ 48 (88)
+++||||||.++
T Consensus 78 ~~~~p~~YVRli 89 (108)
T d1svdm1 78 RSAYPTHQVKLV 89 (108)
T ss_dssp HHHSTTSEEEEE
T ss_pred HHHCCCCEEEEE
Confidence 458999999876
No 2
>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Synechococcus sp., strain pcc 6301 [TaxId: 1131]}
Probab=52.28 E-value=3.8 Score=25.79 Aligned_cols=17 Identities=6% Similarity=0.345 Sum_probs=13.5
Q ss_pred cHhHHH-------hhCCCceEEee
Q 043514 32 SANEIM-------NSNPGHYVALL 48 (88)
Q Consensus 32 sA~eVM-------~~nPGHyVa~~ 48 (88)
++++|| ++||||||.++
T Consensus 66 d~~~Vl~ele~c~~~~p~~YVRli 89 (109)
T d1rbli_ 66 APQQVLDEVRECRSEYGDCYIRVA 89 (109)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CHHHHHHHHHHHHHhCCcCEEEEE
Confidence 456665 78999999876
No 3
>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.63 E-value=5.9 Score=22.90 Aligned_cols=27 Identities=11% Similarity=0.194 Sum_probs=20.1
Q ss_pred eeeeEEcCCCeeEEEeecccHhHHHhhC
Q 043514 13 ATVVIQHPGNKIERIYWSVSANEIMNSN 40 (88)
Q Consensus 13 a~vvI~Hp~Gkve~~y~~vsA~eVM~~n 40 (88)
++++|..|+|++-.|..| +..+++..|
T Consensus 42 valiv~s~~gk~~~f~s~-~~~~vl~ry 68 (71)
T d1egwa_ 42 IALIIFNSSNKLFQYAST-DMDKVLLKY 68 (71)
T ss_dssp EEEEEECTTCCEEEEESS-CHHHHHHHH
T ss_pred EEEEEEcCCCCEEEeeCC-CHHHHHHHH
Confidence 455788899999887664 788877654
No 4
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}
Probab=49.36 E-value=5.2 Score=21.96 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.0
Q ss_pred eEEcCCCeeEEEeecccHhHHHhh
Q 043514 16 VIQHPGNKIERIYWSVSANEIMNS 39 (88)
Q Consensus 16 vI~Hp~Gkve~~y~~vsA~eVM~~ 39 (88)
.|.=|||.+.+|.+.+|+.|+-+.
T Consensus 3 ~ItlPDG~~~~~~~g~T~~diA~~ 26 (62)
T d1tkea1 3 VITLPDGSQRHYDHAVSPMDVALD 26 (62)
T ss_dssp EEECTTSCEEECSSCBCHHHHHHH
T ss_pred EEECCCCCEEEcCCCCCHHHHHHH
Confidence 455599999999999999999776
No 5
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Alcaligenes eutrophus [TaxId: 106590]}
Probab=48.36 E-value=4.9 Score=26.00 Aligned_cols=17 Identities=35% Similarity=0.698 Sum_probs=13.7
Q ss_pred cHhHHH-------hhCCCceEEee
Q 043514 32 SANEIM-------NSNPGHYVALL 48 (88)
Q Consensus 32 sA~eVM-------~~nPGHyVa~~ 48 (88)
++++|| ++||||||.++
T Consensus 60 d~~~Vl~ele~c~~e~p~~YVRli 83 (129)
T d1bxni_ 60 DAAGILMEINNARNTFPNHYIRVT 83 (129)
T ss_dssp CHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred CHHHHHHHHHHHHHHCCcCEEEEE
Confidence 367776 78999999886
No 6
>d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=41.78 E-value=7.3 Score=24.93 Aligned_cols=17 Identities=18% Similarity=0.626 Sum_probs=13.6
Q ss_pred cHhHHH-------hhCCCceEEee
Q 043514 32 SANEIM-------NSNPGHYVALL 48 (88)
Q Consensus 32 sA~eVM-------~~nPGHyVa~~ 48 (88)
++++|| ++||||||.++
T Consensus 78 d~~~Vl~Ele~C~k~~p~~YVRli 101 (122)
T d1wdds_ 78 DATQVLKELEEAKKAYPDAFVRII 101 (122)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCceEEEE
Confidence 566665 68999999876
No 7
>d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]}
Probab=40.58 E-value=8.5 Score=23.72 Aligned_cols=59 Identities=31% Similarity=0.478 Sum_probs=40.5
Q ss_pred CCCeeEEEeecc--cHhHHHhhCCCceEEeeecCcCcc---------------CCCCcce--EEeeCCCCcccCCcEE
Q 043514 20 PGNKIERIYWSV--SANEIMNSNPGHYVALLATSPTLK---------------SENGLPV--KQLLRPDDTLLIGRVY 78 (88)
Q Consensus 20 p~Gkve~~y~~v--sA~eVM~~nPGHyVa~~~~~~~~~---------------~~~~~~~--~klL~Pdd~L~~G~~Y 78 (88)
-+||+..+-..+ +|++..--+|.+|++-.+...... ...|..+ .+.|.|--++.-|++|
T Consensus 22 ~~~ki~a~~~~~~~~a~~~~~L~~~~y~sGtL~vG~~ADiTIf~l~~g~~~~~Ds~G~~~~g~~~L~P~~tI~~G~vy 99 (101)
T d2icsa1 22 KEKKIAAVAATISGSAKETIHLEPGTYVSATLEIGKDADLTIFTIQAEEKTLTDSNGLTRVAKEQIRPIKTIIGGQIY 99 (101)
T ss_dssp ETTEEEEEESCCCCCEEEEEECCTTCEEEESCCTTSBCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEE
T ss_pred ccCeeeeecccccccchheEecCCceeeeeEecCCCeeeEEEEEEecCceEEEeCCCCEEEeeEEEeEEEEEECCEEe
Confidence 679998887544 568889999999997543322111 0123333 3899999999999987
No 8
>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=37.78 E-value=9.1 Score=24.99 Aligned_cols=18 Identities=6% Similarity=0.434 Sum_probs=13.7
Q ss_pred ccHhHHH-------hhCCCceEEee
Q 043514 31 VSANEIM-------NSNPGHYVALL 48 (88)
Q Consensus 31 vsA~eVM-------~~nPGHyVa~~ 48 (88)
-.++||| ++||||||.++
T Consensus 59 ~d~~~Vl~Ele~C~k~~p~~YVRli 83 (138)
T d1bwvs_ 59 TDPAAVLFEINACRKARSNFYIKVV 83 (138)
T ss_dssp CCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCcceEEEE
Confidence 3556665 68999999876
No 9
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]}
Probab=35.67 E-value=3.3 Score=22.75 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.5
Q ss_pred eEEcCCCeeEEEeecccHhHHHhh
Q 043514 16 VIQHPGNKIERIYWSVSANEIMNS 39 (88)
Q Consensus 16 vI~Hp~Gkve~~y~~vsA~eVM~~ 39 (88)
.|.=|||++.+|...+|+.|+=++
T Consensus 2 ~ItlPDG~~~~~~~g~T~~diA~~ 25 (59)
T d1nyra2 2 NIQFPDGNKKAFDKGTTTEDIAQS 25 (59)
T ss_dssp BBCCTTSCCCBCCTTCCHHHHHHT
T ss_pred EEECCCCCEEEcCCCCCHHHHHHH
Confidence 356699999999999999998664
No 10
>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=34.80 E-value=13 Score=22.16 Aligned_cols=29 Identities=7% Similarity=0.094 Sum_probs=21.3
Q ss_pred eeeeEEcCCCeeEEEeecccHhHHHhhCCC
Q 043514 13 ATVVIQHPGNKIERIYWSVSANEIMNSNPG 42 (88)
Q Consensus 13 a~vvI~Hp~Gkve~~y~~vsA~eVM~~nPG 42 (88)
++++|..|+|++-.|..| +..++...|-|
T Consensus 44 vaviv~s~~gk~~~f~sp-~v~~vl~r~~~ 72 (85)
T d1mnma_ 44 VLLLVVSETGLVYTFSTP-KFEPIVTQQEG 72 (85)
T ss_dssp EEEEEECTTCCEEEEECT-TTTHHHHSHHH
T ss_pred EEEEEEcCCCCEEeccCC-CHHHHHHHHhc
Confidence 456888999999998765 57777665433
No 11
>d1gk8i_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=32.60 E-value=13 Score=24.02 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=14.5
Q ss_pred ccHhHHHh-------hCCCceEEee
Q 043514 31 VSANEIMN-------SNPGHYVALL 48 (88)
Q Consensus 31 vsA~eVM~-------~nPGHyVa~~ 48 (88)
-.+++||+ +||+|||.++
T Consensus 84 tD~~~Vl~Ei~~Crka~P~~yIRii 108 (126)
T d1gk8i_ 84 RDPMQVLREIVACTKAFPDAYVRLV 108 (126)
T ss_dssp CCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCceEEEE
Confidence 36788884 7999999865
No 12
>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
Probab=32.20 E-value=15 Score=21.46 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=19.0
Q ss_pred ccchhhhhheeeeEEcCCCeeEEEeecccHhHHH
Q 043514 4 VGNCQAAEAATVVIQHPGNKIERIYWSVSANEIM 37 (88)
Q Consensus 4 MGNCqA~d~a~vvI~Hp~Gkve~~y~~vsA~eVM 37 (88)
||.|+..-.+ +++|+| .+|.-++..++-
T Consensus 54 lG~C~~gP~v---~i~P~~---~~Y~~v~~e~v~ 81 (101)
T d1m2da_ 54 MNASMMGPVV---VVYPDG---VWYGQVKPEDVD 81 (101)
T ss_dssp CSCGGGCSCE---EEETTT---EEECSCCGGGHH
T ss_pred CcccCCCceE---EEcCCc---cEEecCCHHHHH
Confidence 7888754443 557998 578888776554
No 13
>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.06 E-value=18 Score=21.52 Aligned_cols=29 Identities=7% Similarity=0.165 Sum_probs=21.6
Q ss_pred eeeeEEcCCCeeEEEeecccHhHHHhhCCC
Q 043514 13 ATVVIQHPGNKIERIYWSVSANEIMNSNPG 42 (88)
Q Consensus 13 a~vvI~Hp~Gkve~~y~~vsA~eVM~~nPG 42 (88)
++++|.-|+|++-.|..| +..+++..+-|
T Consensus 44 v~liv~s~~gk~~~f~s~-~~~~vi~~~~~ 72 (84)
T d1srsa_ 44 VLLLVASETGHVYTFATR-KLQPMITSETG 72 (84)
T ss_dssp EEEEEECTTCCEEEEECG-GGHHHHSSHHH
T ss_pred EEEEEEcCCCCEEEeeCC-CHHHHHHHHHH
Confidence 355788999999888754 77888776544
No 14
>d2h9fa2 d.21.1.4 (A:187-395) Hypothetical protein PA0793 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=25.80 E-value=12 Score=25.43 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=12.7
Q ss_pred hheeeeEEcCCCeeEE
Q 043514 11 EAATVVIQHPGNKIER 26 (88)
Q Consensus 11 d~a~vvI~Hp~Gkve~ 26 (88)
+.-.|+|.||+|.++-
T Consensus 157 ~~~~v~I~HPsG~~~v 172 (209)
T d2h9fa2 157 ERSAVRFGHPSGTLRV 172 (209)
T ss_dssp CCSEEEEEETTEEEEE
T ss_pred CCCeEEEEcCCceEEE
Confidence 3446899999999874
No 15
>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}
Probab=24.97 E-value=24 Score=22.03 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=15.9
Q ss_pred hhhhhheeeeE-EcCCCeeEEEeecc
Q 043514 7 CQAAEAATVVI-QHPGNKIERIYWSV 31 (88)
Q Consensus 7 CqA~d~a~vvI-~Hp~Gkve~~y~~v 31 (88)
|+ |.+.+-+ +..+|+|+.+.|..
T Consensus 33 CG--D~i~i~l~v~~~~~I~di~F~~ 56 (130)
T d1wfza_ 33 CG--DVMKLQIQVDEKGKIVDARFKT 56 (130)
T ss_dssp TT--EEEEEEEEECSSSBEEEEEEEC
T ss_pred cC--cEEEEEEEecCCCeEEEEEEEe
Confidence 87 6665544 33678999998853
No 16
>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.30 E-value=36 Score=19.34 Aligned_cols=20 Identities=5% Similarity=0.077 Sum_probs=16.0
Q ss_pred eeeEEcCCCeeEEEeecccH
Q 043514 14 TVVIQHPGNKIERIYWSVSA 33 (88)
Q Consensus 14 ~vvI~Hp~Gkve~~y~~vsA 33 (88)
++.|+-|+|+|..+|.+..-
T Consensus 126 ~~~LId~~G~i~~~~~~~~~ 145 (160)
T d1wp0a1 126 IMYLIGPDGEFLDYFGQNKR 145 (160)
T ss_dssp EEEEECTTSCEEEEEETTCC
T ss_pred eEEEECCCCcEEEEECCCCC
Confidence 56788999999999876543
No 17
>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.95 E-value=41 Score=19.12 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=19.9
Q ss_pred eeeEEcCCCeeEEEeecccHhHHHh
Q 043514 14 TVVIQHPGNKIERIYWSVSANEIMN 38 (88)
Q Consensus 14 ~vvI~Hp~Gkve~~y~~vsA~eVM~ 38 (88)
+..|.-++|+|..+...++..++++
T Consensus 104 ~~~iiD~~G~i~~~~g~~~~~~l~~ 128 (134)
T d1zzoa1 104 AYAFVDPHGNVDVVRGRMSQDELTR 128 (134)
T ss_dssp EEEEECTTCCEEEEESCCCHHHHHH
T ss_pred eEEEECCCCeEEEEECCCCHHHHHH
Confidence 3467789999988888888888765
No 18
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.71 E-value=40 Score=18.97 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=25.3
Q ss_pred hhhhhheeeeEEcCCCeeEEEeecccHhHHHhhCCCceEEe
Q 043514 7 CQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVAL 47 (88)
Q Consensus 7 CqA~d~a~vvI~Hp~Gkve~~y~~vsA~eVM~~nPGHyVa~ 47 (88)
-+|+-...+.|.|++|+.-++.-|- -..||..+..
T Consensus 18 ~eal~G~~~~i~~~dG~~i~i~ip~------~~~~g~~~~i 52 (90)
T d1c3ga2 18 KESLLGFSKTIQTIDGRTLPLSRVQ------PVQPSQTSTY 52 (90)
T ss_dssp HHHHHCEEEEEECSSSCEEEEEESS------CCCTTCEEEC
T ss_pred HHHhcCCeEEEecccccceeccccc------cccccccccc
Confidence 3577778899999999877776551 2467877653
No 19
>d1diva1 d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=21.55 E-value=28 Score=20.33 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=24.9
Q ss_pred hhhheeeeEEcCCCeeEEEeecccHhHHHhh
Q 043514 9 AAEAATVVIQHPGNKIERIYWSVSANEIMNS 39 (88)
Q Consensus 9 A~d~a~vvI~Hp~Gkve~~y~~vsA~eVM~~ 39 (88)
.++...++|.---|.--++|++|+.+++-.+
T Consensus 16 ~L~~~~i~i~~k~ge~GkLfGSVt~~dI~~~ 46 (94)
T d1diva1 16 QLEKLTVTIPAKAGEGGRLFGSITSKQIAES 46 (94)
T ss_dssp HHTTCCEEEEECBCGGGEEEEEECHHHHHHH
T ss_pred HhhCCEEEEEEEECCCCeeEecccHHHHHHH
Confidence 4667778888777777789999999998763
No 20
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.15 E-value=33 Score=18.72 Aligned_cols=31 Identities=6% Similarity=-0.033 Sum_probs=24.3
Q ss_pred hheeeeEEcCCCeeEEE--eecccHhHHHhhCC
Q 043514 11 EAATVVIQHPGNKIERI--YWSVSANEIMNSNP 41 (88)
Q Consensus 11 d~a~vvI~Hp~Gkve~~--y~~vsA~eVM~~nP 41 (88)
|-++++|+-.+|+.-.+ ....+.+.+|.+|-
T Consensus 1 e~I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~ 33 (77)
T d2uyzb1 1 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYC 33 (77)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHH
T ss_pred CEEEEEEECCCCCEEEEEECCCChHHHHHHHHH
Confidence 34678999999988654 66788899999764
Done!