BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043515
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EQ3|A Chain A, Nmr Structure Of Human Parvulin Hpar14
Length = 96
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 63/105 (60%), Gaps = 17/105 (16%)
Query: 61 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
VK RHILCEK GKI EA +KL+ G F+++AA+YSE ++GGDLGW
Sbjct: 3 VKVRHILCEKHGKIMEAMEKLKSGM----------RFNEVAAQYSE-DKARQGGDLGWMT 51
Query: 121 RGKMAGPFQEVSFNTPVG------VTSAPFKSTHGYHIILCEGRK 159
RG M GPFQE +F PV T P K+ GYHII+ EGRK
Sbjct: 52 RGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 96
>pdb|3UI4|A Chain A, 0.8 A Resolution Crystal Structure Of Human Parvulin 14
pdb|3UI5|A Chain A, Crystal Structure Of Human Parvulin 14
pdb|3UI6|A Chain A, 0.89 A Resolution Crystal Structure Of Human Parvulin 14
In Complex With Oxidized Dtt
Length = 101
Score = 96.7 bits (239), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 63/105 (60%), Gaps = 17/105 (16%)
Query: 61 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
VK RHILCEK GKI EA +KL+ G F+++AA+YSE ++GGDLGW
Sbjct: 8 VKVRHILCEKHGKIMEAMEKLKSGM----------RFNEVAAQYSE-DKARQGGDLGWMT 56
Query: 121 RGKMAGPFQEVSFNTPVG------VTSAPFKSTHGYHIILCEGRK 159
RG M GPFQE +F PV T P K+ GYHII+ EGRK
Sbjct: 57 RGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 101
>pdb|1FJD|A Chain A, Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMERASE,
Hpar14
Length = 104
Score = 96.3 bits (238), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 65/110 (59%), Gaps = 17/110 (15%)
Query: 56 GTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGD 115
G VK RHILCEK GKI EA +KL+ G F+++AA+YSE + ++GGD
Sbjct: 6 GGGNAVKVRHILCEKHGKIMEAMEKLKSGM----------RFNEVAAQYSEDKA-RQGGD 54
Query: 116 LGWFPRGKMAGPFQEVSFNTPVG------VTSAPFKSTHGYHIILCEGRK 159
LGW RG M GPFQE +F PV T P K+ GYHII+ EGRK
Sbjct: 55 LGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 104
>pdb|1JNS|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS-
Isomerase Parvulin 10
pdb|1JNT|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS-
Isomerase Parvulin 10
Length = 92
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 10/91 (10%)
Query: 63 ARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRG 122
A HIL +++ + +++++G A+F K+A ++S CPSGK+GGDLG F +G
Sbjct: 6 ALHILVKEEKLALDLLEQIKNG----------ADFGKLAKKHSICPSGKRGGDLGEFRQG 55
Query: 123 KMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
+M F +V F+ PV + P + GYHII
Sbjct: 56 QMVPAFDKVVFSCPVLEPTGPLHTQFGYHII 86
>pdb|2RQS|A Chain A, 3d Structure Of Pin From The Psychrophilic Archeon
Cenarcheaum Symbiosum (Cspin)
Length = 97
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 11/94 (11%)
Query: 61 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYS-ECPSGKKGGDLGWF 119
+K HIL +KQG+ ++L+ G +F K+A E S + S K+ G LG+F
Sbjct: 10 IKCSHILVKKQGEALAVQERLKAGE----------KFGKLAKELSIDGGSAKRDGSLGYF 59
Query: 120 PRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
RGKM PF++ +F VG S P KS GYH+I
Sbjct: 60 GRGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVI 93
>pdb|1ZK6|A Chain A, Nmr Solution Structure Of B. Subtilis Prsa Ppiase
Length = 93
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 61 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
++A HIL + E KKL+ G +F +A EYS S KGGDLGWF
Sbjct: 5 IRASHILVADKKTAEEVEKKLKKG----------EKFEDLAKEYSTDSSASKGGDLGWFA 54
Query: 121 R-GKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
+ G+M F + +F G S P K+ +GYHII
Sbjct: 55 KEGQMDETFSKAAFKLKTGEVSDPVKTQYGYHII 88
>pdb|3RFW|A Chain A, The Virulence Factor Peb4 And The Periplasmic Protein
Cj1289 Are Two Structurally-Related Sura-Like Chaperones
In The Human Pathogen Campylobacter Jejuni
Length = 252
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 61 VKARHILC--EKQGK--INEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGK-KGGD 115
V+A+HIL EK+ K INE K L+ L A+FS++A E S P K +GG+
Sbjct: 113 VQAKHILVATEKEAKDIINE-LKGLKGKELD-------AKFSELAKEKSIDPGSKNQGGE 164
Query: 116 LGWFPRGKMAGPFQEVSFNTPVG-VTSAPFKSTHGYHIILCEG 157
LGWF + M PF + +F G +T+ P K+ GYH+IL E
Sbjct: 165 LGWFDQSTMVKPFTDAAFALKNGTITTTPVKTNFGYHVILKEN 207
>pdb|1NMW|A Chain A, Solution Structure Of The Ppiase Domain Of Human Pin1
Length = 114
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69 EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
EK + E +L +G++ K + +F +A+++S+C S K GDLG F RG+M PF
Sbjct: 27 EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 85
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
++ SF G S P + G HIIL
Sbjct: 86 EDASFALRTGEMSGPVFTDSGIHIIL 111
>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
Length = 167
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 69 EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
EK + E +L +G++ K + +F +A+++S+C S K GDLG F RG+MA PF
Sbjct: 80 EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMAKPF 138
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
++ SF G S P + G HIIL
Sbjct: 139 EDASFALRTGEMSGPVFTDSGIHIIL 164
>pdb|1J6Y|A Chain A, Solution Structure Of Pin1at From Arabidopsis Thaliana
Length = 139
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 16/115 (13%)
Query: 55 LGTCTYVKARHILCEKQGKINEAYKKLQDGWL----SNGDKVPQ------------AEFS 98
+ + VKA HIL + QG +A K +G + + V Q A F
Sbjct: 21 MASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFE 80
Query: 99 KIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
++A S+C S K+GGDLG F RG+M PF+E ++ VG S + G HII
Sbjct: 81 EVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHII 135
>pdb|3IK8|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IK8|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKD|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKD|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKG|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKG|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3JYJ|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
pdb|3JYJ|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
pdb|3I6C|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
pdb|3I6C|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
Length = 123
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69 EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
E+ + E +L +G++ K + +F +A+++S+C S K GDLG F RG+M PF
Sbjct: 36 EQITRTQEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 94
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
++ SF G S P + G HIIL
Sbjct: 95 EDASFALRTGEMSGPVFTDSGIHIIL 120
>pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69 EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
EK + E +L +G++ K + +F +A+++S+C S K GDLG F RG+M PF
Sbjct: 76 EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 134
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
++ SF G S P + G HIIL
Sbjct: 135 EDASFALRTGEMSGPVFTDSGIHIIL 160
>pdb|3KAC|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAC|B Chain B, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
Length = 123
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69 EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
E+ + E +L +G++ K + +F +A+++S+C S K GDLG F RG+M PF
Sbjct: 36 EQITRTQEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 94
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
++ SF G S P + G HIIL
Sbjct: 95 EDASFALRTGEMSGPVFTDSGIHIIL 120
>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69 EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
EK + E +L +G++ K + +F +A+++S+C S K GDLG F RG+M PF
Sbjct: 76 EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 134
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
++ SF G S P + G HIIL
Sbjct: 135 EDASFALRTGEMSGPVFTDSGIHIIL 160
>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69 EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
EK + E +L +G++ K + +F +A+++S+C S K GDLG F RG+M PF
Sbjct: 76 EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 134
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
++ SF G S P + G HIIL
Sbjct: 135 EDASFALRTGEMSGPVFTDSGIHIIL 160
>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
Length = 162
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69 EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
EK + E +L +G++ K + +F +A+++S+C S K GDLG F RG+M PF
Sbjct: 75 EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 133
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
++ SF G S P + G HIIL
Sbjct: 134 EDASFALRTGEMSGPVFTDSGIHIIL 159
>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
Pin1 By Epigallocatechin-3-Gallate
Length = 163
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69 EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
EK + E +L +G++ K + +F +A+++S+C S K GDLG F RG+M PF
Sbjct: 76 EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 134
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
++ SF G S P + G HIIL
Sbjct: 135 EDASFALRTGEMSGPVFTDSGIHIIL 160
>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens
pdb|1NMV|A Chain A, Solution Structure Of Human Pin1
Length = 163
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69 EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
EK + E +L +G++ K + +F +A+++S+C S K GDLG F RG+M PF
Sbjct: 76 EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 134
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
++ SF G S P + G HIIL
Sbjct: 135 EDASFALRTGEMSGPVFTDSGIHIIL 160
>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
Length = 161
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69 EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
EK + E +L +G++ K + +F +A+++S+C S K GDLG F RG+M PF
Sbjct: 74 EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 132
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
++ SF G S P + G HIIL
Sbjct: 133 EDASFALRTGEMSGPVFTDSGIHIIL 158
>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69 EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
EK + E +L +G++ K + +F +A+++S+C S K GDLG F RG+M PF
Sbjct: 76 EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 134
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
++ SF G S P + G HIIL
Sbjct: 135 EDASFALRTGEMSGPVFTDSGIHIIL 160
>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor
pdb|3TDB|A Chain A, Human Pin1 Bound To Trans Peptidomimetic Inhibitor
Length = 158
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69 EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
EK + E +L +G++ K + +F +A+++S+C S K GDLG F RG+M PF
Sbjct: 71 EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 129
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
++ SF G S P + G HIIL
Sbjct: 130 EDASFALRTGEMSGPVFTDSGIHIIL 155
>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
Domains By O- Phosphorylated Natural Product Derivatives
Length = 166
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69 EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
EK + E +L +G++ K + +F +A+++S+C S K GDLG F RG+M PF
Sbjct: 79 EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 137
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
++ SF G S P + G HIIL
Sbjct: 138 EDASFALRTGEMSGPVFTDSGIHIIL 163
>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition
By Group Iv Ww Domains
Length = 167
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69 EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
EK + E +L +G++ K + +F +A+++S+C S K GDLG F RG+M PF
Sbjct: 80 EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 138
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
++ SF G S P + G HIIL
Sbjct: 139 EDASFALRTGEMSGPVFTDSGIHIIL 164
>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
Length = 167
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69 EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
EK + E +L +G++ K + +F +A+++S+C S K GDLG F RG+M PF
Sbjct: 80 EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 138
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
++ SF G S P + G HIIL
Sbjct: 139 EDASFALRTGEMSGPVFTDSGIHIIL 164
>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 69 EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
EK + E +L +G++ K + +F +A+++S+C S K GDLG F RG+ PF
Sbjct: 76 EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQAQKPF 134
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
++ SF G S P + G HIIL
Sbjct: 135 EDASFALRTGEMSGPVFTDSGIHIIL 160
>pdb|1YW5|A Chain A, Peptidyl-Prolyl Isomerase Ess1 From Candida Albicans
Length = 177
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 94 QAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
+ + S++A S+C S +GGDLG+F +G+M PF+E +FN VG S ++ G HI+
Sbjct: 114 EVKLSELANTESDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSNIIETNSGVHIL 173
Query: 154 LCEG 157
G
Sbjct: 174 QRTG 177
>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 69 EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
EK + E +L +G++ K + +F +A+++S+ S K GDLG F RG+M PF
Sbjct: 76 EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDASSAKARGDLGAFSRGQMQKPF 134
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
++ SF G S P + G HIIL
Sbjct: 135 EDASFALRTGEMSGPVFTDSGIHIIL 160
>pdb|4G2P|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
Domain Ii Of Molecular Chaperone Sura From Salmonella
Enterica Subsp. Enterica Serovar Typhimurium Str. 14028s
pdb|4G2P|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
Domain Ii Of Molecular Chaperone Sura From Salmonella
Enterica Subsp. Enterica Serovar Typhimurium Str. 14028s
Length = 110
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 57 TCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGD 115
+ T V ARHIL + N+ +L+ ++ K + F+ A EYS+ P S +GGD
Sbjct: 5 SVTEVHARHILLKPSPIXNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGD 64
Query: 116 LGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII-LCEGRK 159
LGW F++ G SAP S+ G+H+I L + RK
Sbjct: 65 LGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLIELLDTRK 109
>pdb|1M5Y|A Chain A, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
pdb|1M5Y|B Chain B, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
pdb|1M5Y|C Chain C, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
pdb|1M5Y|D Chain D, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
Length = 408
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 57 TCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGD 115
+ T V ARHIL + + + +++ ++ K + F+ A E+S+ P S +GGD
Sbjct: 261 SVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGD 320
Query: 116 LGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN 160
LGW F++ G SAP S+ G+H+I +N
Sbjct: 321 LGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRN 365
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 95 AEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
A+F K+A +S GG +GW ++ G F + G P +S G+HI+
Sbjct: 190 ADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHIL 248
>pdb|2LJ4|A Chain A, Solution Structure Of The Tbpin1
Length = 115
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 94 QAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
+ F + A++ S+C S GGDLG+F G+M PF++ +G S ++ G HII
Sbjct: 52 EVSFEEAASQRSDCGSYASGGDLGFFSSGEMMKPFEDAVRALKIGDISPIVQTDSGLHII 111
>pdb|2JZV|A Chain A, Solution Structure Of S. Aureus Prsa-Ppiase
Length = 111
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 62 KARHIL-------CEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYS-ECPSGKKG 113
KA HIL +K+G ++ K+ + K P ++F +IA + S + S KK
Sbjct: 9 KASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDP-SKFGEIAKKESMDTGSAKKD 67
Query: 114 GDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCE 156
G+LG+ +G+ F++ F G S KS+ GYHII +
Sbjct: 68 GELGYVLKGQTDKDFEKALFKLKDGEVSEVVKSSFGYHIIKAD 110
>pdb|2PV3|A Chain A, Crystallographic Structure Of Sura Fragment Lacking The
Second Peptidyl-prolyl Isomerase Domain Complexed With
Peptide Nftlkfwdifrk
pdb|2PV3|B Chain B, Crystallographic Structure Of Sura Fragment Lacking The
Second Peptidyl-prolyl Isomerase Domain Complexed With
Peptide Nftlkfwdifrk
Length = 299
Score = 33.9 bits (76), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 95 AEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
A+F K+A +S GG +GW ++ G F + G P +S G+HI+
Sbjct: 190 ADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHIL 248
>pdb|2PV1|A Chain A, Crystallographic Structure Of Sura First Peptidyl-Prolyl
Isomerase Domain Complexed With Peptide Weyipnv
pdb|2PV2|A Chain A, Crystallographic Structure Of Sura First Peptidyl-Prolyl
Isomerase Domain Complexed With Peptide Nftlkfwdifrk
pdb|2PV2|B Chain B, Crystallographic Structure Of Sura First Peptidyl-Prolyl
Isomerase Domain Complexed With Peptide Nftlkfwdifrk
pdb|2PV2|C Chain C, Crystallographic Structure Of Sura First Peptidyl-Prolyl
Isomerase Domain Complexed With Peptide Nftlkfwdifrk
pdb|2PV2|D Chain D, Crystallographic Structure Of Sura First Peptidyl-Prolyl
Isomerase Domain Complexed With Peptide Nftlkfwdifrk
Length = 103
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 95 AEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
A+F K+A +S GG +GW ++ G F + G P +S G+HI+
Sbjct: 39 ADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHIL 97
>pdb|3GPK|A Chain A, Crystal Structure Of Ppic-Type Peptidyl-Prolyl Cis-Trans
Isomerase Domain At 1.55a Resolution.
pdb|3GPK|B Chain B, Crystal Structure Of Ppic-Type Peptidyl-Prolyl Cis-Trans
Isomerase Domain At 1.55a Resolution
Length = 112
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 97 FSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
F A +YSE + GGDLGW ++ + + G + P + G+ I+
Sbjct: 42 FVAYARQYSEASTAAVGGDLGWIRLAQLPTELATTAASXGPGQLAGPVEIRGGFSIL 98
>pdb|2KGJ|A Chain A, Solution Structure Of Parvulin Domain Of Ppid From E.Coli
Length = 102
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 96 EFSKIAAEYS-ECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIIL 154
+F+ +A E S + S + GGD+GW + + G S KS+ G+ I+
Sbjct: 31 DFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKEK-GQLSGVIKSSVGFLIVR 89
Query: 155 CE 156
+
Sbjct: 90 LD 91
>pdb|2FTC|J Chain J, Structural Model For The Large Subunit Of The Mammalian
Mitochondrial Ribosome
pdb|3IY9|S Chain S, Leishmania Tarentolae Mitochondrial Large Ribosomal
Subunit Model
Length = 116
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 70 KQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSG 110
K G NE ++ D WL+ D +P+ F +A Y + G
Sbjct: 54 KLGDTNERAMRMADFWLTEKDLIPKL-FQVLAPRYKDQTGG 93
>pdb|2CQM|A Chain A, Solution Structure Of The Mitochondrial Ribosomal Protein
L17 Isolog
Length = 122
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 70 KQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSG 110
K G NE ++ D WL+ D +P+ F +A Y + G
Sbjct: 44 KLGDTNERAMRMADFWLTEKDLIPKL-FQVLAPRYKDQTGG 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,132,257
Number of Sequences: 62578
Number of extensions: 151248
Number of successful extensions: 398
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 40
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)