Query 043515
Match_columns 160
No_of_seqs 207 out of 1154
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 05:49:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3258 Parvulin-like peptidyl 99.9 3E-27 6.4E-32 172.1 11.3 106 43-159 22-133 (133)
2 PF13616 Rotamase_3: PPIC-type 99.9 2.9E-26 6.2E-31 168.8 9.3 96 54-159 9-117 (117)
3 PRK15441 peptidyl-prolyl cis-t 99.9 2.8E-25 6.1E-30 157.7 10.4 91 59-159 3-93 (93)
4 PTZ00356 peptidyl-prolyl cis-t 99.9 1.5E-22 3.3E-27 148.9 10.6 91 57-156 2-114 (115)
5 TIGR02933 nifM_nitrog nitrogen 99.9 1.3E-22 2.7E-27 167.5 11.3 102 50-160 113-222 (256)
6 PF00639 Rotamase: PPIC-type P 99.9 2.3E-22 5E-27 142.7 9.4 84 65-157 1-95 (95)
7 PRK04405 prsA peptidylprolyl i 99.9 1.4E-21 2.9E-26 164.9 10.6 92 58-159 142-237 (298)
8 PRK02998 prsA peptidylprolyl i 99.9 2.9E-21 6.2E-26 161.6 10.8 91 59-159 133-224 (283)
9 PRK10770 peptidyl-prolyl cis-t 99.9 2.4E-21 5.1E-26 168.3 9.9 97 53-159 148-256 (413)
10 PRK03002 prsA peptidylprolyl i 99.9 3.2E-21 7E-26 161.4 10.4 91 59-159 135-226 (285)
11 PRK03095 prsA peptidylprolyl i 99.9 4.2E-21 9.1E-26 160.9 11.0 92 59-160 131-223 (287)
12 PRK00059 prsA peptidylprolyl i 99.8 1.5E-20 3.2E-25 159.4 10.6 102 49-160 184-289 (336)
13 PRK10788 periplasmic folding c 99.8 1.9E-19 4.1E-24 164.0 9.8 100 50-160 260-360 (623)
14 PRK10770 peptidyl-prolyl cis-t 99.8 1.7E-19 3.6E-24 156.7 8.1 97 54-159 260-366 (413)
15 KOG3259 Peptidyl-prolyl cis-tr 99.8 1.7E-19 3.8E-24 137.3 7.0 98 57-156 51-162 (163)
16 PRK01326 prsA foldase protein 99.8 2.6E-19 5.7E-24 151.5 7.4 90 59-160 144-241 (310)
17 TIGR02925 cis_trans_EpsD pepti 99.8 1.3E-18 2.8E-23 140.5 9.5 100 49-160 127-227 (232)
18 PRK12450 foldase protein PrsA; 99.7 5E-18 1.1E-22 143.7 9.6 89 59-159 147-243 (309)
19 COG0760 SurA Parvulin-like pep 99.6 3.7E-16 7.9E-21 126.5 0.0 99 57-160 165-264 (320)
20 PF13145 Rotamase_2: PPIC-type 99.2 7.4E-12 1.6E-16 89.2 4.7 97 50-159 12-109 (121)
21 PRK10788 periplasmic folding c 92.0 0.59 1.3E-05 43.1 7.4 43 117-159 532-579 (623)
22 PF12075 KN_motif: KN motif; 54.8 5.9 0.00013 23.9 0.7 9 144-152 4-12 (39)
23 COG1854 LuxS LuxS protein invo 23.7 30 0.00065 27.1 0.3 12 10-21 72-83 (161)
24 PF07139 DUF1387: Protein of u 23.6 99 0.0022 26.7 3.4 23 15-38 1-23 (302)
25 PF04218 CENP-B_N: CENP-B N-te 21.8 1.4E+02 0.0029 18.6 3.0 25 75-109 13-37 (53)
No 1
>KOG3258 consensus Parvulin-like peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3e-27 Score=172.11 Aligned_cols=106 Identities=59% Similarity=1.046 Sum_probs=92.8
Q ss_pred CCCCCCCCCccCCCCCceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCC
Q 043515 43 KGKGKGGKSADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRG 122 (160)
Q Consensus 43 ~~~~~~~~n~~~f~~p~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~ 122 (160)
.+.++.++..+-....+.|++|||||+.+..+.+++++|++| ..|.++|.+||+|+ +.+||||||++++
T Consensus 22 ~~d~~~gk~~~~kgggtaVKvRHiLCEKqGKi~EA~eKLk~G----------~~F~evAA~YSEdk-ar~GGDLGW~~RG 90 (133)
T KOG3258|consen 22 GGDGKAGKAADGKGGGTAVKVRHILCEKQGKINEAMEKLKSG----------MKFNEVAAQYSEDK-ARQGGDLGWMTRG 90 (133)
T ss_pred CCCCcccccccCCCCcceEEEEEeeehhhchHHHHHHHHHcc----------cchHHHHHHhccCc-cccCCcccceecc
Confidence 334444555555666788999999999999999999999999 89999999999996 8889999999999
Q ss_pred CCcHHHHHHHhcCCCCC------ccCcEEeCCeEEEEEEeEEc
Q 043515 123 KMAGPFQEVSFNTPVGV------TSAPFKSTHGYHIILCEGRK 159 (160)
Q Consensus 123 ~l~p~f~~a~f~L~~Ge------vS~Piks~~GyhIIkV~~rr 159 (160)
.|.-+|++++|+|+++. ++.||+|.+|||||+|+.|+
T Consensus 91 ~MvGPFQdaAFalpvs~~~~pv~TdpP~KtkfGYHiImvEGrK 133 (133)
T KOG3258|consen 91 SMVGPFQDAAFALPVSTVDKPVYTDPPVKTKFGYHIIMVEGRK 133 (133)
T ss_pred ccccchhhhhhcccccccCCccccCCCcccccceEEEEecccC
Confidence 99999999999999995 44677899999999999874
No 2
>PF13616 Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3UI5_A 3UI4_A 1FJD_A 1EQ3_A 1ZK6_A.
Probab=99.93 E-value=2.9e-26 Score=168.84 Aligned_cols=96 Identities=39% Similarity=0.673 Sum_probs=84.5
Q ss_pred CCCCCceEEEEEEEecC-----------cchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCcccccc-
Q 043515 54 GLGTCTYVKARHILCEK-----------QGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFP- 120 (160)
Q Consensus 54 ~f~~p~~v~v~hIlv~~-----------~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~- 120 (160)
+...|++|+++||+|+. ...|++++.+|+.| ++|++||++||+|+ ++.+||++||++
T Consensus 9 ~~~~~~~v~~~~I~i~~~~~~~~~~~~ak~~a~~i~~~l~~G----------~dF~~lA~~yS~D~~s~~~gG~lgw~~~ 78 (117)
T PF13616_consen 9 KKQAPDEVKVSHILIPVPDASSRSKEEAKKKADSILKQLKSG----------ADFAELAKKYSQDPSSAENGGDLGWMSE 78 (117)
T ss_dssp --GE--EEEEEEEEESS-----------HHHHHHHHHHHHCT----------CCHHHHHHHHTSSCGTGGGTTEEEEEET
T ss_pred ccCCcCeEEEEEEEEeccccccchhHHHHHHHHHHHHHHHCC----------CCHHHHHHHhCCCCcccccCCccccccC
Confidence 34467899999999997 44678899999988 99999999999998 689999999999
Q ss_pred CCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeEEc
Q 043515 121 RGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK 159 (160)
Q Consensus 121 ~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr 159 (160)
.+.|+++|.+++|+|++|+||+||+|++|||||+|++|+
T Consensus 79 ~~~~~~~f~~~~~~l~~G~is~~v~s~~G~hIikv~drk 117 (117)
T PF13616_consen 79 PSQLPPEFEEAAFSLKVGEISGPVESPNGYHIIKVTDRK 117 (117)
T ss_dssp TTSSSCHHHHHHHHS-TTECTCEEEETTEEEEEEEEEE-
T ss_pred CccccHHHHHHHHcCCCCCCCCeEEECCEEEEEEEEeeC
Confidence 999999999999999999999999999999999999986
No 3
>PRK15441 peptidyl-prolyl cis-trans isomerase C; Provisional
Probab=99.93 E-value=2.8e-25 Score=157.74 Aligned_cols=91 Identities=38% Similarity=0.676 Sum_probs=87.0
Q ss_pred ceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCCCCcHHHHHHHhcCCCC
Q 043515 59 TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVG 138 (160)
Q Consensus 59 ~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~~l~p~f~~a~f~L~~G 138 (160)
.++.++||+|.+++.|++++++|++| .+|++||++||+|+++..||+|||+..++|+|+|.++++.|++|
T Consensus 3 ~~~~~~~I~~~~~~~A~~i~~~l~~g----------~~F~~la~~~S~~~~~~~gG~lg~~~~~~l~~~f~~a~~~l~~G 72 (93)
T PRK15441 3 KTAAALHILVKEEKLALDLLEQIKNG----------ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL 72 (93)
T ss_pred CceEEEEEEECCHHHHHHHHHHHHCC----------CCHHHHHHHhCCCchhhcCccceeecccccCHHHHHHHHhCCCC
Confidence 57999999999999999999999998 89999999999999777899999999999999999999999999
Q ss_pred CccCcEEeCCeEEEEEEeEEc
Q 043515 139 VTSAPFKSTHGYHIILCEGRK 159 (160)
Q Consensus 139 evS~Piks~~GyhIIkV~~rr 159 (160)
++|+||+|++|||||+|++|.
T Consensus 73 ~vs~Pi~t~~G~hIlkv~~r~ 93 (93)
T PRK15441 73 EPTGPLHTQFGYHIIKVLYRN 93 (93)
T ss_pred CcCCcEEcCCEEEEEEEEecC
Confidence 999999999999999999873
No 4
>PTZ00356 peptidyl-prolyl cis-trans isomerase (PPIase); Provisional
Probab=99.88 E-value=1.5e-22 Score=148.86 Aligned_cols=91 Identities=36% Similarity=0.644 Sum_probs=80.1
Q ss_pred CCceEEEEEEEecCcc----------------------hHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCC
Q 043515 57 TCTYVKARHILCEKQG----------------------KINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGG 114 (160)
Q Consensus 57 ~p~~v~v~hIlv~~~~----------------------~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GG 114 (160)
+|++|+++|||+...+ .++.++++|++| +.+|+++|++||+++++.+||
T Consensus 2 ~~~~~~~~hIli~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~g---------~~~F~~la~~~S~~~~~~~gG 72 (115)
T PTZ00356 2 EGDTVRAAHLLIKHTGSRNPVSRRTGKPVTRSKEEAIKELAKWREQIVSG---------EKTFEEIARQRSDCGSAAKGG 72 (115)
T ss_pred CCcEEEEEEEEEecCCCcCcccccccccccccHHHHHHHHHHHHHHHHhC---------ccCHHHHHHHhCCCchhhcCc
Confidence 5789999999997533 345566666666 249999999999988888999
Q ss_pred ccccccCCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEe
Q 043515 115 DLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCE 156 (160)
Q Consensus 115 dlG~~~~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~ 156 (160)
++||+...+|+|+|.+++++|++|++|.||+|++|||||+++
T Consensus 73 ~lG~~~~~~L~~~~~~a~~~L~~Geis~Pi~t~~G~hIlk~~ 114 (115)
T PTZ00356 73 DLGFFGRGQMQKPFEDAAFALKVGEISDIVHTDSGVHIILRL 114 (115)
T ss_pred cceeEcccccCHHHHHHHHcCCCCCCCCcEEECCEEEEEEEc
Confidence 999999999999999999999999999999999999999986
No 5
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=99.88 E-value=1.3e-22 Score=167.50 Aligned_cols=102 Identities=28% Similarity=0.529 Sum_probs=89.3
Q ss_pred CCccCCCCCceEEEEEEEecCcch--------HHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccC
Q 043515 50 KSADGLGTCTYVKARHILCEKQGK--------INEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPR 121 (160)
Q Consensus 50 ~n~~~f~~p~~v~v~hIlv~~~~~--------A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~ 121 (160)
.|++.|..|+.++++||+|+..+. +++++.+|+.| ..+|++||++||.|+++.+||+|||++.
T Consensus 113 ~~~~~~~~~e~~~~~hIli~~~~~~~~~a~~~a~~l~~~l~~g---------~~~F~~lA~~~S~~~sa~~GGdlG~~~~ 183 (256)
T TIGR02933 113 RHAEQFKRPEQRLTRHLLLTVNEDDREAVRTRILAILRRLRGK---------PAAFAEQAMRHSHCPTAMEGGLLGWVSR 183 (256)
T ss_pred HHHHhcCCCCeEEEEEEEEECCcccHHHHHHHHHHHHHHHHhC---------cccHHHHHHHhCCCCccccCCccCCcCC
Confidence 567888889999999999986321 34556666664 2689999999999998889999999999
Q ss_pred CCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeEEcC
Q 043515 122 GKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN 160 (160)
Q Consensus 122 ~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr~ 160 (160)
+.|+|+|.+++++|++|+||+||+|++|||||+|.++++
T Consensus 184 ~~l~~~~~~~l~~L~~G~vS~Pi~s~~G~hIlkl~~~~~ 222 (256)
T TIGR02933 184 GLLYPQLDAALFQLAEGELSPPIESEIGWHLLLCEAIRP 222 (256)
T ss_pred CccChHHHHHHHcCCCCCcCCceeeCCeEEEEEEeeecC
Confidence 999999999999999999999999999999999999864
No 6
>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5.2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....
Probab=99.88 E-value=2.3e-22 Score=142.67 Aligned_cols=84 Identities=42% Similarity=0.802 Sum_probs=75.2
Q ss_pred EEEecCc----------chHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCC-CCCCCCCccccccCCCCcHHHHHHHh
Q 043515 65 HILCEKQ----------GKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSEC-PSGKKGGDLGWFPRGKMAGPFQEVSF 133 (160)
Q Consensus 65 hIlv~~~----------~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d-~sa~~GGdlG~~~~~~l~p~f~~a~f 133 (160)
||||+.+ ..|++++.+|..| +.+|+++|++||++ +++.+||++||+..++|+++|.++|+
T Consensus 1 HIl~~~~~~~~~~~~~~~~a~~i~~~l~~g---------~~~F~~~A~~yS~~~~~~~~gG~~g~~~~~~l~~~~~~~~~ 71 (95)
T PF00639_consen 1 HILVKPPPSDEEKDAAKKKAEEIYEQLKKG---------EDSFAELAREYSEDSPSAENGGDLGWISRGQLPPEFEKALF 71 (95)
T ss_dssp EEEEESTTSCCHHHHHHHHHHHHHHHHHTT---------SSSHHHHHHHHCSSSCTGGGTTEEEEEETTSSBHHHHHHHH
T ss_pred CEEEECCCchhhHHHHHHHHHHHHHHHHhC---------chhHHHHHHHhCCCcccccccCccccccCCcccHHHHHHHH
Confidence 8999863 2467888888888 24599999999965 48899999999999999999999999
Q ss_pred cCCCCCccCcEEeCCeEEEEEEeE
Q 043515 134 NTPVGVTSAPFKSTHGYHIILCEG 157 (160)
Q Consensus 134 ~L~~GevS~Piks~~GyhIIkV~~ 157 (160)
+|++|+||.||+|++|||||+|++
T Consensus 72 ~l~~Gevs~pi~t~~G~~Ii~v~d 95 (95)
T PF00639_consen 72 ALKPGEVSKPIETDNGYHIIKVED 95 (95)
T ss_dssp TSTTTSBEEEEEETTEEEEEEEEE
T ss_pred hCCCCCcCCCEEECCEEEEEEEEC
Confidence 999999999999999999999986
No 7
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=99.86 E-value=1.4e-21 Score=164.90 Aligned_cols=92 Identities=32% Similarity=0.515 Sum_probs=84.6
Q ss_pred CceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCcccccc--CCCCcHHHHHHHhc
Q 043515 58 CTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFP--RGKMAGPFQEVSFN 134 (160)
Q Consensus 58 p~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~--~~~l~p~f~~a~f~ 134 (160)
+++++++||+|++++.|++++++|+.| .+|++||++||.|+ ++.+||+|||+. ...|+|+|.+++++
T Consensus 142 ~~~~~v~hIlv~~~~~A~~v~~~l~~G----------~~F~~lA~~~S~d~~~~~~GGdlG~~~~~~~~l~~~f~~a~~~ 211 (298)
T PRK04405 142 QPKVTVQHILVSKKSTAETVIKKLKDG----------KDFAKLAKKYSTDTATKNKGGKLSAFDSTDTTLDSTFKTAAFK 211 (298)
T ss_pred hhhEEEEEEEecChHHHHHHHHHHHCC----------CCHHHHHHHhCCCcchhhcCCcCcccccCCCCCCHHHHHHHHc
Confidence 357999999999999999999999998 89999999999998 567899999885 46899999999999
Q ss_pred CCCCCcc-CcEEeCCeEEEEEEeEEc
Q 043515 135 TPVGVTS-APFKSTHGYHIILCEGRK 159 (160)
Q Consensus 135 L~~GevS-~Piks~~GyhIIkV~~rr 159 (160)
|++|+|+ +||+|++|||||+|.+++
T Consensus 212 L~~Geiss~pv~t~~GyhIikv~~~~ 237 (298)
T PRK04405 212 LKNGEYTTTPVKTTYGYEVIKMIKHP 237 (298)
T ss_pred CCCCCccCCCEEeCCeEEEEEEeecC
Confidence 9999995 999999999999999864
No 8
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=99.85 E-value=2.9e-21 Score=161.59 Aligned_cols=91 Identities=33% Similarity=0.602 Sum_probs=86.6
Q ss_pred ceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCccccccCCCCcHHHHHHHhcCCC
Q 043515 59 TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPRGKMAGPFQEVSFNTPV 137 (160)
Q Consensus 59 ~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~~~~l~p~f~~a~f~L~~ 137 (160)
++++++||+|+++..|++++++|++| .+|+++|++||.|+ ++.+||++||+..+.++|+|.+++|.|++
T Consensus 133 ~~~~v~~Ilv~~e~~A~~i~~~l~~G----------~~F~~lA~~~S~d~~s~~~gG~lg~~~~~~l~~~~~~a~~~Lk~ 202 (283)
T PRK02998 133 PEMKVSHILVKDEKTAKEVKEKVNNG----------EDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDA 202 (283)
T ss_pred cceEEEEEEeCCHHHHHHHHHHHHCC----------CCHHHHHHHhCCCcchhhcCCcCCCcCCCcchHHHHHHHHcCCC
Confidence 36999999999999999999999998 89999999999998 66789999999999999999999999999
Q ss_pred CCccCcEEeCCeEEEEEEeEEc
Q 043515 138 GVTSAPFKSTHGYHIILCEGRK 159 (160)
Q Consensus 138 GevS~Piks~~GyhIIkV~~rr 159 (160)
|+||+||+|++|||||+|++++
T Consensus 203 GevS~pi~t~~G~hIikv~~~~ 224 (283)
T PRK02998 203 GQVSEPVKTTYGYHIIKVTDKK 224 (283)
T ss_pred CCcCCceEECCEEEEEEEeccC
Confidence 9999999999999999999875
No 9
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=99.85 E-value=2.4e-21 Score=168.29 Aligned_cols=97 Identities=25% Similarity=0.433 Sum_probs=88.0
Q ss_pred cCCCCCceEEEEEEEecCc------------chHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCcccccc
Q 043515 53 DGLGTCTYVKARHILCEKQ------------GKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120 (160)
Q Consensus 53 ~~f~~p~~v~v~hIlv~~~------------~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~ 120 (160)
+.|..+++++++||+|+.+ ..|++++.+|++| .+|++||+.||+|+++.+||+|||+.
T Consensus 148 ~~~~~~~~~~~~~I~i~~~~~~s~~~~~~~~~~a~~l~~~l~~g----------~~F~~lA~~yS~~~~a~~gGdlg~~~ 217 (413)
T PRK10770 148 NQNDASTELNLSHILIPLPENPTQDQVDEAESQARSIVDQARNG----------ADFGKLAIAYSADQQALKGGQMGWGR 217 (413)
T ss_pred hhccccceEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHCC----------CCHHHHHHHhCCCcccccCCcCCccc
Confidence 4466688999999999743 2466778888888 89999999999999999999999999
Q ss_pred CCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeEEc
Q 043515 121 RGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK 159 (160)
Q Consensus 121 ~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr 159 (160)
++.|||+|.+++|+|++|+||+||+|++|||||+|.+++
T Consensus 218 ~~~l~~~~~~~~~~l~~G~is~Pi~t~~GyhIikl~~~~ 256 (413)
T PRK10770 218 IQELPGLFAQALSTAKKGDIVGPIRSGVGFHILKVNDLR 256 (413)
T ss_pred cccccHHHHHHHHhCCCCCCCCcEECCCceEEEEEeeec
Confidence 999999999999999999999999999999999999986
No 10
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=99.85 E-value=3.2e-21 Score=161.41 Aligned_cols=91 Identities=42% Similarity=0.667 Sum_probs=86.7
Q ss_pred ceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCccccccCCCCcHHHHHHHhcCCC
Q 043515 59 TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPRGKMAGPFQEVSFNTPV 137 (160)
Q Consensus 59 ~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~~~~l~p~f~~a~f~L~~ 137 (160)
++++++||+|+.++.|+.++.+|++| .+|++||++||.|+ ++.+||++||+..+.|+|+|.+++|+|++
T Consensus 135 ~~~~~~~Ilv~~~~~A~~i~~~l~~G----------~~F~~lA~~~S~d~~s~~~gGdlg~~~~~~l~p~~~~a~~~L~~ 204 (285)
T PRK03002 135 PEIKASHILVSDENEAKEIKKKLDAG----------ASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKV 204 (285)
T ss_pred cceEEEEEEECCHHHHHHHHHHHHCC----------CCHHHHHHHhCCCcchhhcCCccceeccccCCHHHHHHHHcCCC
Confidence 46899999999999999999999998 89999999999998 67889999999999999999999999999
Q ss_pred CCccCcEEeCCeEEEEEEeEEc
Q 043515 138 GVTSAPFKSTHGYHIILCEGRK 159 (160)
Q Consensus 138 GevS~Piks~~GyhIIkV~~rr 159 (160)
|++|+||+|++|||||+|++++
T Consensus 205 GevS~pI~t~~G~hIikv~~~~ 226 (285)
T PRK03002 205 GQISNPVKSPNGYHIIKLTDKK 226 (285)
T ss_pred CCcCCcEEECCEEEEEEEeecC
Confidence 9999999999999999999875
No 11
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=99.85 E-value=4.2e-21 Score=160.88 Aligned_cols=92 Identities=37% Similarity=0.625 Sum_probs=87.1
Q ss_pred ceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCccccccCCCCcHHHHHHHhcCCC
Q 043515 59 TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPRGKMAGPFQEVSFNTPV 137 (160)
Q Consensus 59 ~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~~~~l~p~f~~a~f~L~~ 137 (160)
+.++++||+|+.+..|++++.+|..| .+|++||++||.|+ ++.+||++||++++.|+|+|.+++++|++
T Consensus 131 ~~v~~~hIlv~~~~~A~~i~~~l~~G----------~~F~~lA~~yS~d~~s~~~gG~lg~~~~~~L~~~~~~al~~L~~ 200 (287)
T PRK03095 131 PEIKASHILVKDEATAKKVKEELGQG----------KSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLKK 200 (287)
T ss_pred ccEEEEEEEeCCHHHHHHHHHHHHCC----------CCHHHHHHHhCCCccccccCCcCceeccccccHHHHHHHHhCCC
Confidence 35999999999999999999999998 89999999999998 67789999999999999999999999999
Q ss_pred CCccCcEEeCCeEEEEEEeEEcC
Q 043515 138 GVTSAPFKSTHGYHIILCEGRKN 160 (160)
Q Consensus 138 GevS~Piks~~GyhIIkV~~rr~ 160 (160)
|++|+||+|++|||||+|+++++
T Consensus 201 GevS~pi~t~~G~hIikv~~~~~ 223 (287)
T PRK03095 201 DEVSEPVKSQFGYHIIKVTDIKE 223 (287)
T ss_pred CCcCCceEECCEEEEEEEeeecC
Confidence 99999999999999999999863
No 12
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=99.84 E-value=1.5e-20 Score=159.37 Aligned_cols=102 Identities=31% Similarity=0.474 Sum_probs=95.0
Q ss_pred CCCccCCC-CCceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCccccccC--CCC
Q 043515 49 GKSADGLG-TCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPR--GKM 124 (160)
Q Consensus 49 ~~n~~~f~-~p~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~~--~~l 124 (160)
..|++.|. .|++++++||++++++.|+++++++++| .+|+++|++||.++ ++.+||++||++. +.+
T Consensus 184 ~~~~~~~~~~p~~~~v~~I~~~~~~~a~~~~~~l~~g----------~~F~~la~~~s~~~~~~~~~g~lg~~~~~~~~l 253 (336)
T PRK00059 184 NENKSKFTEKPNTMHLAHILVKTEDEAKKVKKRLDKG----------EDFAKVAKEVSQDPGSKDKGGDLGDVPYSDSGY 253 (336)
T ss_pred HHhhhhhcCCcceEEEEEEEecCHHHHHHHHHHHHCC----------CCHHHHHHHhCCCcchhhcCCcccccccccCcc
Confidence 46788886 6899999999999999999999999998 89999999999997 7788999999998 789
Q ss_pred cHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeEEcC
Q 043515 125 AGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN 160 (160)
Q Consensus 125 ~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr~ 160 (160)
+|+|.+++|.|++|+||+||++++|||||+|+++++
T Consensus 254 ~~~~~~a~~~l~~Gevs~pi~~~~G~~i~~v~~~~~ 289 (336)
T PRK00059 254 DKEFMDGAKALKEGEISAPVKTQFGYHIIKAIKKKE 289 (336)
T ss_pred CHHHHHHHHcCCCCCcCccEecCCeEEEEEEEeecc
Confidence 999999999999999999999999999999999864
No 13
>PRK10788 periplasmic folding chaperone; Provisional
Probab=99.80 E-value=1.9e-19 Score=163.99 Aligned_cols=100 Identities=22% Similarity=0.378 Sum_probs=89.0
Q ss_pred CCccCCCCCceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCccccccCCCCcHHH
Q 043515 50 KSADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPRGKMAGPF 128 (160)
Q Consensus 50 ~n~~~f~~p~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~~~~l~p~f 128 (160)
.|+++|..|++++++||+++.++.|++++.+|+.| ++|++||++||.|+ ++.+||+|||+.++.|+++|
T Consensus 260 ~~~~~~~~~e~~~~~~i~~~~~~~A~~~~~~l~~G----------~~F~~lA~~~s~d~~s~~~gGdlg~~~~~~~~~~~ 329 (623)
T PRK10788 260 QHQDQFTQPERKRYSIIQTKTEAEAKAVLDELKKG----------ADFATLAKEKSTDIISARNGGDLGWLEPATTPDEL 329 (623)
T ss_pred HHHHhcCChhheeeeEEEECCHHHHHHHHHHHhCC----------CCHHHHHHHhCCCcchhhcCCcccccCCCCCChHH
Confidence 35566777777777777777777889999999998 89999999999998 88999999999999999999
Q ss_pred HHHHhcCCCCCccCcEEeCCeEEEEEEeEEcC
Q 043515 129 QEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN 160 (160)
Q Consensus 129 ~~a~f~L~~GevS~Piks~~GyhIIkV~~rr~ 160 (160)
.++++ +++|++|+||+|++|||||+|+++++
T Consensus 330 ~~a~~-~~~G~vs~pv~t~~G~~Iikv~~~~~ 360 (623)
T PRK10788 330 KNAGL-KEKGQLSGVIKSSVGFLIVRLDDIQP 360 (623)
T ss_pred HHHhc-cCCCCcCCcEEECCeEEEEEEEeecc
Confidence 99988 68899999999999999999999864
No 14
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=99.79 E-value=1.7e-19 Score=156.71 Aligned_cols=97 Identities=31% Similarity=0.518 Sum_probs=83.4
Q ss_pred CCCCCceEEEEEEEecCcc---------hHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCccccccCCC
Q 043515 54 GLGTCTYVKARHILCEKQG---------KINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPRGK 123 (160)
Q Consensus 54 ~f~~p~~v~v~hIlv~~~~---------~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~~~~ 123 (160)
.+..+++++++||||+... .++.++.+|..| ..+|++||++||.|+ ++.+||++||+..+.
T Consensus 260 ~~~~~~e~~~~hIli~~~~~~~~~~a~~~~~~i~~~i~~g---------~~~F~~~A~~~S~d~~s~~~gG~lg~~~~~~ 330 (413)
T PRK10770 260 QNISVTEVHARHILLKPSPIMTDEQARAKLEQIAADIKSG---------KTTFAAAAKEFSQDPGSANQGGDLGWATPDI 330 (413)
T ss_pred ccchHHhhhhhheEECCCCCCCHHHHHHHHHHHHHHHHcC---------cccHHHHHHHhCCCCChHhhCCcCCccCccc
Confidence 3445678999999997532 234556666665 259999999999998 788999999999999
Q ss_pred CcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeEEc
Q 043515 124 MAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK 159 (160)
Q Consensus 124 l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr 159 (160)
|+|+|.+++++|++|++|.||.|++|||||+|++++
T Consensus 331 ~~~~~~~~~~~l~~GeiS~pv~t~~g~~ii~v~~~~ 366 (413)
T PRK10770 331 FDPAFRDALMRLNKGQISAPVHSSFGWHLIELLDTR 366 (413)
T ss_pred cCHHHHHHHHcCCCCCcCCcEEcCCeEEEEEEeecc
Confidence 999999999999999999999999999999999985
No 15
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.7e-19 Score=137.28 Aligned_cols=98 Identities=34% Similarity=0.606 Sum_probs=80.1
Q ss_pred CCceEEEEEEEecCcc--------------hHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCC
Q 043515 57 TCTYVKARHILCEKQG--------------KINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRG 122 (160)
Q Consensus 57 ~p~~v~v~hIlv~~~~--------------~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~ 122 (160)
.|.+|+++||||+.+. ..++++..|+. +...++..+.+|++||.++|+|.++..|||||||.++
T Consensus 51 ~p~~Vr~sHlLVKH~~SRrpsSwr~~~it~skeeA~~llk~--~~~~l~~g~~~f~elA~q~SdCSSaKRGGDLG~fgrg 128 (163)
T KOG3259|consen 51 EPARVRCSHLLVKHKGSRRPSSWRSENITRSKEEALDLLKG--YHEDLKSGSGDFEELAKQRSDCSSAKRGGDLGFFGRG 128 (163)
T ss_pred CccceeEEEEEEccccCCCCcccccccchhhHHHHHHHHHH--hHHHhhcCcccHHHHHHhhcChhhhccCCcccccccc
Confidence 4589999999997632 12333333321 3334455578899999999999999999999999999
Q ss_pred CCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEe
Q 043515 123 KMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCE 156 (160)
Q Consensus 123 ~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~ 156 (160)
+|-++|++|+|+|++|++|+||.|+.|+|||+-.
T Consensus 129 qMqk~FEdaafaL~~ge~SgiV~t~SG~HiI~R~ 162 (163)
T KOG3259|consen 129 QMQKPFEDAAFALKVGEMSGIVDTDSGVHIIYRT 162 (163)
T ss_pred cccccchhhhhhcccccccCceecCCceEEEEec
Confidence 9999999999999999999999999999999853
No 16
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=99.78 E-value=2.6e-19 Score=151.53 Aligned_cols=90 Identities=18% Similarity=0.278 Sum_probs=82.0
Q ss_pred ceEEEEEEEecCcchHHHHHHHHh-cCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccC-CCCcHHHHHHHhcCC
Q 043515 59 TYVKARHILCEKQGKINEAYKKLQ-DGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPR-GKMAGPFQEVSFNTP 136 (160)
Q Consensus 59 ~~v~v~hIlv~~~~~A~~a~~kl~-~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~-~~l~p~f~~a~f~L~ 136 (160)
++++++||++..++.|++++.+|+ .| ++|++||++||. ++.+||+|||+.. ..||++|.+++|+|+
T Consensus 144 ~~~~~~~I~~~~~~~A~~i~~~l~~~G----------~dF~~lA~~~S~--s~~~GGdlg~~~~~~~l~~~~~~a~~~Lk 211 (310)
T PRK01326 144 PEVTAQIIRLDNEDKAKSVLEEAKAEG----------ADFAQIAKENTT--TKEKKGEYKFDSGSTNVPEQVKKAAFALD 211 (310)
T ss_pred ccccchhhhHhhhHHHHHHHHHHHhCC----------CCHHHHHHHhCc--ccccCCcccccCCCCcccHHHHHHHHcCC
Confidence 458999999999999999999998 58 899999999998 6678999999987 468999999999999
Q ss_pred CCCccCcEEe------CCeEEEEEEeEEcC
Q 043515 137 VGVTSAPFKS------THGYHIILCEGRKN 160 (160)
Q Consensus 137 ~GevS~Piks------~~GyhIIkV~~rr~ 160 (160)
+|+||+||++ .+|||||+|.++++
T Consensus 212 ~GevS~pv~t~~~~~~~~GyhIikv~~~~~ 241 (310)
T PRK01326 212 EDGVSDVISVLDPTAYQSKYYIVKVTKKTE 241 (310)
T ss_pred CCCcCCceecCCCCcCCceEEEEEEeccCC
Confidence 9999999998 78999999998763
No 17
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=99.77 E-value=1.3e-18 Score=140.48 Aligned_cols=100 Identities=9% Similarity=0.039 Sum_probs=88.8
Q ss_pred CCCccCCCCCceEEEEEEEecCcc-hHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCCCCcHH
Q 043515 49 GKSADGLGTCTYVKARHILCEKQG-KINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGP 127 (160)
Q Consensus 49 ~~n~~~f~~p~~v~v~hIlv~~~~-~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~~l~p~ 127 (160)
.+|++.|..+++|+++||+|+.++ .+++++++++.| .+|+++|.+++... ...+|++||++.++|+|+
T Consensus 127 ~~~~~~f~~~~~~~~~hIlv~~~~~~a~~~~~~l~~g----------~~f~~la~~~~~~~-~~~~~~~~~~~~~~l~~~ 195 (232)
T TIGR02925 127 QEHPQLFAERKLYNLQEIALPPDMELLDELRAMVENG----------KPLEDILAWLKAKN-VPFNASSAARPAEQLPAE 195 (232)
T ss_pred HhCHHhcCCCceEEEEEEEecCChhHHHHHHHHHhcC----------CCHHHHHHHhhhcC-cccccccccCchhhCCHH
Confidence 468889999999999999997544 588899999998 89999999988643 345788999999999999
Q ss_pred HHHHHhcCCCCCccCcEEeCCeEEEEEEeEEcC
Q 043515 128 FQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN 160 (160)
Q Consensus 128 f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr~ 160 (160)
|.+++++|++|+|+ ||+|++|||||+|+++++
T Consensus 196 ~~~a~~~l~~G~is-~v~s~~G~hiikv~~~~~ 227 (232)
T TIGR02925 196 ILAVLAKLKPGAPL-VVQGPNNVLILVLADAQP 227 (232)
T ss_pred HHHHHHhCCCCCeE-EeecCCceEEEEEecccc
Confidence 99999999999999 899999999999999864
No 18
>PRK12450 foldase protein PrsA; Reviewed
Probab=99.75 E-value=5e-18 Score=143.75 Aligned_cols=89 Identities=21% Similarity=0.284 Sum_probs=79.2
Q ss_pred ceEEEEEEEecCcchHHHHHHHHh-cCCccCCCCCChhcHHHHHHHhCCCCCCCCCCcccccc-CCCCcHHHHHHHhcCC
Q 043515 59 TYVKARHILCEKQGKINEAYKKLQ-DGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP-RGKMAGPFQEVSFNTP 136 (160)
Q Consensus 59 ~~v~v~hIlv~~~~~A~~a~~kl~-~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~-~~~l~p~f~~a~f~L~ 136 (160)
+.++++||++..++.|++++++|+ .| ++|++||++||.|+ .+||++||.. ...|+|+|.+++|.|+
T Consensus 147 ~~~~~~~I~~~~~~~A~~i~~~l~~~G----------~dF~~lAk~~S~~~--~~~g~~~f~~~~~~l~~ef~~aa~~Lk 214 (309)
T PRK12450 147 PTMTAEIMQFEKEEDAKAALEAVKAEG----------ADFAAIAKEKTIAA--DKKTTYTFDSGETTLPAEVVRAASGLK 214 (309)
T ss_pred ccceeEEEEeCCHHHHHHHHHHHHhcC----------CCHHHHHHHhCCCc--ccCCcccccCCCCCCCHHHHHHHHcCC
Confidence 468999999999999999999998 48 89999999999985 3578999875 3579999999999999
Q ss_pred CCCccC------cEEeCCeEEEEEEeEEc
Q 043515 137 VGVTSA------PFKSTHGYHIILCEGRK 159 (160)
Q Consensus 137 ~GevS~------Piks~~GyhIIkV~~rr 159 (160)
+|+||+ ||+|++|||||+|++++
T Consensus 215 ~GevS~~i~~~~pv~t~~GyhIikl~~~~ 243 (309)
T PRK12450 215 EGNRSEIITALDPATSKRTYHIIKVTKKA 243 (309)
T ss_pred CCCccccccCCCccccCCceEEEEEeccc
Confidence 999998 55799999999999875
No 19
>COG0760 SurA Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.7e-16 Score=126.47 Aligned_cols=99 Identities=40% Similarity=0.664 Sum_probs=87.0
Q ss_pred CCceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCC-CCCccccccCCCCcHHHHHHHhcC
Q 043515 57 TCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGK-KGGDLGWFPRGKMAGPFQEVSFNT 135 (160)
Q Consensus 57 ~p~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~-~GGdlG~~~~~~l~p~f~~a~f~L 135 (160)
.+++++++||+++.++.+.+++.++..+... .+.+|+++|++||.|++.. .||++||...+.|+|+|.++++.+
T Consensus 165 ~~~~~~~~~i~~~~~~~a~~~~~~~~~~~~~-----~~~~f~~~a~~~s~~~~~~~~g~~~~~~~~~~~~p~f~~a~~~~ 239 (320)
T COG0760 165 KVTEVQARHILVKAEAKAKEALALLKKGVRE-----AKADFAELAKKQSEDPSSKNGGGLLGWNKKGQLVPEFRKAAFIL 239 (320)
T ss_pred HHHHHhhcccccCchHhHHHHHHHHHhcccc-----ccCCHHHHHHHcCCCcccccCCccccccCccccChHHHHHHHhc
Confidence 3578999999999999999999988766211 3479999999999999555 477888999999999999999999
Q ss_pred CCCCccCcEEeCCeEEEEEEeEEcC
Q 043515 136 PVGVTSAPFKSTHGYHIILCEGRKN 160 (160)
Q Consensus 136 ~~GevS~Piks~~GyhIIkV~~rr~ 160 (160)
++|+++.||+|.+|||||+|+++++
T Consensus 240 ~~g~~~~pv~t~~g~~ii~v~~~~~ 264 (320)
T COG0760 240 KVGEVSAPVKTSFGYHIIKVEKKRD 264 (320)
T ss_pred cCcccccccccchHHHHHHHHhhhh
Confidence 9999999999999999999988763
No 20
>PF13145 Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2KGJ_A.
Probab=99.25 E-value=7.4e-12 Score=89.25 Aligned_cols=97 Identities=21% Similarity=0.332 Sum_probs=70.4
Q ss_pred CCccCCCCCceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccC-CCCcHHH
Q 043515 50 KSADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPR-GKMAGPF 128 (160)
Q Consensus 50 ~n~~~f~~p~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~-~~l~p~f 128 (160)
.|++.|..|+.+.+.+++++....++.+.+.++.+ ...+|.+++..++.+. .+++|... ..|+++|
T Consensus 12 ~n~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~ 78 (121)
T PF13145_consen 12 ENKDRFSQPERRIFQIIFFKAEDAAEAAKALAKKK--------AGEDFAALAKKYSIDQ-----SDLGIFTDESDLPPEF 78 (121)
T ss_dssp H-HHHH--EEEEEEEEEEESSCCHHHHHHHHHHHH--------CHHHHHHHHHCTHCCC-----CCCCCCETTHHH-HHH
T ss_pred HHHHHhCCcccEEEEEEEeCCHHHHHHHHHHHhhc--------ccchHHHHHHhcCCcc-----ccccccccccccCHHH
Confidence 58899999999778877777766666555555542 1267888888877663 34446555 3588999
Q ss_pred HHHHhcCCCCCccCcEEeCCeEEEEEEeEEc
Q 043515 129 QEVSFNTPVGVTSAPFKSTHGYHIILCEGRK 159 (160)
Q Consensus 129 ~~a~f~L~~GevS~Piks~~GyhIIkV~~rr 159 (160)
.+++|.|++|+||+||++++|||||+|.++.
T Consensus 79 ~~~~~~l~~g~~s~~i~~~~~~~v~~v~~~~ 109 (121)
T PF13145_consen 79 ADALFKLKPGEVSGPIESGNGYYVVKVKERN 109 (121)
T ss_dssp HCCHTT-STT-EEEEEEETTEEEEEEEEEEE
T ss_pred HHHHhcCCCCCeeeeEEECCEEEEEEEEeec
Confidence 9999999999999999999999999999875
No 21
>PRK10788 periplasmic folding chaperone; Provisional
Probab=92.04 E-value=0.59 Score=43.09 Aligned_cols=43 Identities=14% Similarity=0.231 Sum_probs=35.3
Q ss_pred ccccCCCCcHHHHHHHhcCCCCCccCcEEe-----CCeEEEEEEeEEc
Q 043515 117 GWFPRGKMAGPFQEVSFNTPVGVTSAPFKS-----THGYHIILCEGRK 159 (160)
Q Consensus 117 G~~~~~~l~p~f~~a~f~L~~GevS~Piks-----~~GyhIIkV~~rr 159 (160)
.|+++..++|.+..++|.++.|.++.|+.. ..||.|++|.++.
T Consensus 532 ~~~~r~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~v~~v~~v~ 579 (623)
T PRK10788 532 KTLSRTSQDDPLSQAAFALPLPAKDKPSYGMAQDMQGNVVLIALDEVT 579 (623)
T ss_pred cceecCCCChHHHHHHhcCCCCCCCCCeeEEEEcCCCCEEEEEEcccc
Confidence 467766676789999999999998888755 5789999998864
No 22
>PF12075 KN_motif: KN motif; InterPro: IPR021939 This small motif is found at the N terminus of Kank proteins and has been called the KN (for Kank N-terminal) motif. This protein is found in eukaryotes. Proteins in this family are typically between 413 to 1202 amino acids in length. This protein is found associated with PF00023 from PFAM. This protein has two conserved sequence motifs: TPYG and LDLDF. Kank1 was obtained by positional cloning of a tumor suppressor gene in renal cell carcinoma, while the other members were found by homology search. The family is involved in the regulation of actin polymerisation and cell motility through signaling pathways containing PI3K/Akt and/or unidentified modulators/effectors [].
Probab=54.77 E-value=5.9 Score=23.89 Aligned_cols=9 Identities=44% Similarity=0.929 Sum_probs=8.2
Q ss_pred EEeCCeEEE
Q 043515 144 FKSTHGYHI 152 (160)
Q Consensus 144 iks~~GyhI 152 (160)
|+|+.||||
T Consensus 4 v~tPYGyhi 12 (39)
T PF12075_consen 4 VETPYGYHI 12 (39)
T ss_pred ccCCcceee
Confidence 789999998
No 23
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=23.68 E-value=30 Score=27.07 Aligned_cols=12 Identities=42% Similarity=0.744 Sum_probs=9.4
Q ss_pred cccccccCCCCC
Q 043515 10 FDKLDFSPMGKD 21 (160)
Q Consensus 10 ~~~~~~~~~~~~ 21 (160)
|+-+|+||||=.
T Consensus 72 ~~iID~SPMGCr 83 (161)
T COG1854 72 VEIIDISPMGCR 83 (161)
T ss_pred eeEEEecCcccc
Confidence 677899999854
No 24
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=23.55 E-value=99 Score=26.66 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=13.1
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCC
Q 043515 15 FSPMGKDSKPKDGGKGKGKQAAGG 38 (160)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~ 38 (160)
|.++||+++.+.. |-|.|+..+.
T Consensus 1 WnvTGKKKNnKkK-KsK~K~~~~~ 23 (302)
T PF07139_consen 1 WNVTGKKKNNKKK-KSKPKPHQGN 23 (302)
T ss_pred CCCCCCCCCCccC-CCCCCcccCC
Confidence 5678997654443 5555554333
No 25
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=21.78 E-value=1.4e+02 Score=18.57 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCC
Q 043515 75 NEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPS 109 (160)
Q Consensus 75 ~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~s 109 (160)
-+++..+..| .+..++|++|....+
T Consensus 13 ~~iI~~~e~g----------~s~~~ia~~fgv~~s 37 (53)
T PF04218_consen 13 LEIIKRLEEG----------ESKRDIAREFGVSRS 37 (53)
T ss_dssp HHHHHHHHCT----------T-HHHHHHHHT--CC
T ss_pred HHHHHHHHcC----------CCHHHHHHHhCCCHH
Confidence 3577788888 789999999987653
Done!