Query 043515
Match_columns 160
No_of_seqs 207 out of 1154
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 09:38:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jns_A Peptidyl-prolyl CIS-tra 100.0 1.5E-28 5E-33 172.8 9.3 91 59-159 2-92 (92)
2 3gpk_A PPIC-type peptidyl-prol 100.0 3.3E-28 1.1E-32 177.8 10.1 93 58-160 5-105 (112)
3 4g2p_A Chaperone SURA; structu 100.0 4.8E-28 1.7E-32 175.9 10.3 95 56-160 4-109 (110)
4 3ui4_A Peptidyl-prolyl CIS-tra 99.9 8.4E-28 2.9E-32 172.3 11.1 90 59-159 6-101 (101)
5 2rqs_A Parvulin-like peptidyl- 99.9 1.7E-27 5.7E-32 169.0 9.7 93 55-157 4-97 (97)
6 3i6c_A Peptidyl-prolyl CIS-tra 99.9 1.5E-27 5.1E-32 177.0 9.8 98 51-157 5-123 (123)
7 2lj4_A Peptidyl-prolyl CIS-tra 99.9 1.8E-27 6.2E-32 174.4 10.0 91 57-156 1-114 (115)
8 1zk6_A Foldase protein PRSA; a 99.9 1.4E-27 4.7E-32 167.8 8.8 90 58-157 2-92 (93)
9 2pv1_A Chaperone SURA; surviVa 99.9 3.8E-27 1.3E-31 168.4 8.3 91 59-159 1-103 (103)
10 2kgj_A Peptidyl-prolyl CIS-tra 99.9 7.7E-27 2.6E-31 167.4 6.1 91 59-160 2-95 (102)
11 2jzv_A Foldase protein PRSA; p 99.9 4.2E-26 1.4E-30 165.1 9.2 92 57-157 4-111 (111)
12 1j6y_A Peptidyl-prolyl CIS-tra 99.9 1.2E-26 3.9E-31 175.2 2.7 98 49-156 15-138 (139)
13 3tc5_A Peptidyl-prolyl CIS-tra 99.9 2.3E-25 7.8E-30 172.7 9.5 95 54-157 51-166 (166)
14 1yw5_A Peptidyl prolyl CIS/tra 99.9 4.6E-25 1.6E-29 172.0 9.7 98 50-157 52-177 (177)
15 3rfw_A Cell-binding factor 2; 99.9 4E-24 1.4E-28 173.0 9.0 105 49-160 101-210 (252)
16 3nrk_A LIC12922; NC domain, pa 99.8 5.8E-22 2E-26 166.3 3.4 98 50-159 151-265 (325)
17 1m5y_A SurviVal protein, survi 99.8 6.2E-21 2.1E-25 162.6 8.0 102 49-160 142-255 (408)
18 1m5y_A SurviVal protein, survi 99.8 5.1E-19 1.8E-23 150.7 10.8 96 54-159 258-364 (408)
19 3rgc_A Possible periplasmic pr 99.7 3.9E-17 1.3E-21 131.8 5.5 85 49-160 124-208 (252)
20 2k3d_A LIN0334 protein; alpha 22.4 18 0.00061 24.5 -0.1 14 6-19 22-35 (87)
No 1
>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A
Probab=99.95 E-value=1.5e-28 Score=172.77 Aligned_cols=91 Identities=38% Similarity=0.676 Sum_probs=87.9
Q ss_pred ceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCCCCcHHHHHHHhcCCCC
Q 043515 59 TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVG 138 (160)
Q Consensus 59 ~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~~l~p~f~~a~f~L~~G 138 (160)
++++++||+|+.++.|++++++|++| ++|++||++||+|+++.+||+|||+.+++|+|+|.+++|+|++|
T Consensus 2 ~~~~~~hIl~~~~~~A~~i~~~l~~g----------~~F~~lA~~~S~~~s~~~gGdlg~~~~~~l~~~f~~a~~~l~~G 71 (92)
T 1jns_A 2 KTAAALHILVKEEKLALDLLEQIKNG----------ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL 71 (92)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHHHT----------CCHHHHHHHHHCSTTTTTGGGCCEEETTSSCHHHHHHHHHSCTT
T ss_pred CEEEEEEEEeCCHHHHHHHHHHHHCC----------CCHHHHHHHhCCCcchhcCCeeeEEcCcccCHHHHHHHHhCCCC
Confidence 58999999999999999999999998 89999999999999999999999999999999999999999999
Q ss_pred CccCcEEeCCeEEEEEEeEEc
Q 043515 139 VTSAPFKSTHGYHIILCEGRK 159 (160)
Q Consensus 139 evS~Piks~~GyhIIkV~~rr 159 (160)
+||+||+|++|||||+|++++
T Consensus 72 ~is~pv~t~~G~hIi~v~~~r 92 (92)
T 1jns_A 72 EPTGPLHTQFGYHIIKVLYRN 92 (92)
T ss_dssp CCEEEEEETTEEEEEEEECCC
T ss_pred CcCCcEEECCEEEEEEEEeeC
Confidence 999999999999999999875
No 2
>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans}
Probab=99.95 E-value=3.3e-28 Score=177.80 Aligned_cols=93 Identities=19% Similarity=0.409 Sum_probs=87.2
Q ss_pred CceEEEEEEEecCc--------chHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCCCCcHHHH
Q 043515 58 CTYVKARHILCEKQ--------GKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQ 129 (160)
Q Consensus 58 p~~v~v~hIlv~~~--------~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~~l~p~f~ 129 (160)
+++|+++||||+.. ..|++++++|++| ++|++||++||+|+++.+||+|||+.+++|+|+|.
T Consensus 5 ~~~~~v~hIli~~~~~~~~~a~~~A~~i~~~l~~G----------~~F~~lA~~~S~d~sa~~GGdlG~~~~~~l~~~f~ 74 (112)
T 3gpk_A 5 TEEYRIGEIFLAATEENKPQVFANAEKIVEQLKQG----------GSFVAYARQYSEASTAAVGGDLGWIRLAQLPTELA 74 (112)
T ss_dssp CCEEEEEEEEEECCGGGHHHHHHHHHHHHHHHHTT----------CCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHH
T ss_pred CcEEEEEEEEEeCChhhHHHHHHHHHHHHHHHHCC----------CCHHHHHHHhCCCcchhcCcccceEcccccCHHHH
Confidence 57999999999865 3578888999988 89999999999999999999999999999999999
Q ss_pred HHHhcCCCCCccCcEEeCCeEEEEEEeEEcC
Q 043515 130 EVSFNTPVGVTSAPFKSTHGYHIILCEGRKN 160 (160)
Q Consensus 130 ~a~f~L~~GevS~Piks~~GyhIIkV~~rr~ 160 (160)
+++|+|++|+||+||+|++|||||+|+++++
T Consensus 75 ~a~~~l~~GeiS~pv~t~~G~hIikv~~~~~ 105 (112)
T 3gpk_A 75 TTAASMGPGQLAGPVEIRGGFSILYLIDKRE 105 (112)
T ss_dssp HHHHHCCTTCEEEEEEETTEEEEEEEEEEEC
T ss_pred HHHHhCCCCCccceEEECCEEEEEEEEeEec
Confidence 9999999999999999999999999999975
No 3
>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp}
Probab=99.95 E-value=4.8e-28 Score=175.86 Aligned_cols=95 Identities=34% Similarity=0.531 Sum_probs=86.5
Q ss_pred CCCceEEEEEEEecCc---------chHHHHHHHHhcCCccCCCCCChh-cHHHHHHHhCCCC-CCCCCCccccccCCCC
Q 043515 56 GTCTYVKARHILCEKQ---------GKINEAYKKLQDGWLSNGDKVPQA-EFSKIAAEYSECP-SGKKGGDLGWFPRGKM 124 (160)
Q Consensus 56 ~~p~~v~v~hIlv~~~---------~~A~~a~~kl~~G~l~~~~~~~~~-~F~~lAk~yS~d~-sa~~GGdlG~~~~~~l 124 (160)
..+++|+++||||... ..+++++++|++| . +|++||++||+|+ ++.+||+|||+.+++|
T Consensus 4 ~~~~~v~~~hIli~~~~~~~~~~a~~~a~~i~~~l~~G----------~~~F~~lA~~~S~d~~s~~~GG~lG~~~~~~l 73 (110)
T 4g2p_A 4 ISVTEVHARHILLKPSPIMNDQQARLKLEEIAADIKSG----------KTTFAAAAKEYSQDPGSANQGGDLGWATPDIF 73 (110)
T ss_dssp CCCEEEEEEEEEECCCSSSCHHHHHHHHHHHHHHHHTT----------SSCHHHHHHHHCCCTTTGGGTTEEEEECGGGS
T ss_pred ccccEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHcC----------cccHHHHHHHhCCCccccccccccCeeccccc
Confidence 3568999999999753 2456788888888 6 9999999999998 8899999999999999
Q ss_pred cHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeEEcC
Q 043515 125 AGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN 160 (160)
Q Consensus 125 ~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr~ 160 (160)
+|+|.+++|+|++|+||+||+|++|||||+|+++|+
T Consensus 74 ~~~f~~a~~~l~~Geis~pv~t~~G~hIikv~~~r~ 109 (110)
T 4g2p_A 74 DPAFRDALTKLHKGQISAPVHSSFGWHLIELLDTRK 109 (110)
T ss_dssp CHHHHHHHHTCCTTCBCCCEEETTEEEEEEEEEEEE
T ss_pred CHHHHHHHHcCCCCCcCccEEECCEEEEEEEEEEec
Confidence 999999999999999999999999999999999974
No 4
>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} SCOP: d.26.1.1 PDB: 3ui5_A 3ui6_A 1fjd_A 1eq3_A
Probab=99.95 E-value=8.4e-28 Score=172.29 Aligned_cols=90 Identities=57% Similarity=1.014 Sum_probs=86.6
Q ss_pred ceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCCCCcHHHHHHHhcCCCC
Q 043515 59 TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVG 138 (160)
Q Consensus 59 ~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~~l~p~f~~a~f~L~~G 138 (160)
++|+++||+|++++.|++++++|++| ++|++||++||+|+ +.+||+|||+.+++|+|+|.+++|+|++|
T Consensus 6 ~~v~~~~Ilv~~~~~A~~i~~~l~~G----------~~F~~lA~~~S~d~-a~~GGdlG~~~~~~l~~~f~~a~~~l~~G 74 (101)
T 3ui4_A 6 NAVKVRHILCEKHGKIMEAMEKLKSG----------MRFNEVAAQYSEDK-ARQGGDLGWMTRGSMVGPFQEAAFALPVS 74 (101)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHHTT----------CCHHHHHHHHCSSS-GGGTTEEEEEETTSSCHHHHHHHHTSCCC
T ss_pred cEEEEEEEEECCHHHHHHHHHHHHCC----------CCHHHHHHHhCcCc-hhcCCceeeEcCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999999999999 89999999999995 78899999999999999999999999999
Q ss_pred CccC------cEEeCCeEEEEEEeEEc
Q 043515 139 VTSA------PFKSTHGYHIILCEGRK 159 (160)
Q Consensus 139 evS~------Piks~~GyhIIkV~~rr 159 (160)
+||. ||+|++|||||+|++|+
T Consensus 75 ~vs~~~~~~~pv~t~~G~hIikv~~rk 101 (101)
T 3ui4_A 75 GMDKPVFTDPPVKTKFGYHIIMVEGRK 101 (101)
T ss_dssp BTTBCCBCSSCEEETTEEEEEEEEEEC
T ss_pred CCccCcccCCcEEECCEEEEEEEEeeC
Confidence 9997 99999999999999986
No 5
>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum}
Probab=99.95 E-value=1.7e-27 Score=168.99 Aligned_cols=93 Identities=41% Similarity=0.661 Sum_probs=88.1
Q ss_pred CCCCceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCC-CCCCCCCccccccCCCCcHHHHHHHh
Q 043515 55 LGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSEC-PSGKKGGDLGWFPRGKMAGPFQEVSF 133 (160)
Q Consensus 55 f~~p~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d-~sa~~GGdlG~~~~~~l~p~f~~a~f 133 (160)
++.|++++++||+++.++.|++++++|++| ++|++||++||+| +++.+||+|||+.+++|+|+|++++|
T Consensus 4 ~~~~~~~~~~hIl~~~~~~A~~i~~~l~~g----------~~F~~lA~~~S~d~~s~~~GG~lG~~~~~~l~~~f~~a~~ 73 (97)
T 2rqs_A 4 GSMADKIKCSHILVKKQGEALAVQERLKAG----------EKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAF 73 (97)
T ss_dssp CCCCCSEEEEEEEESCHHHHHHHHHHHTTT----------CCHHHHHHHTCCCCGGGGGTTEEEEECTTSSCHHHHHHHT
T ss_pred ccccceEEEEEEEeCCHHHHHHHHHHHHCC----------CCHHHHHHHhCCCCcchhcCceeeeEcCCCCCHHHHHHHH
Confidence 567899999999999999999999999998 8999999999965 58899999999999999999999999
Q ss_pred cCCCCCccCcEEeCCeEEEEEEeE
Q 043515 134 NTPVGVTSAPFKSTHGYHIILCEG 157 (160)
Q Consensus 134 ~L~~GevS~Piks~~GyhIIkV~~ 157 (160)
+|++|+||+||+|++|||||+|++
T Consensus 74 ~l~~G~is~pv~t~~G~hIi~v~d 97 (97)
T 2rqs_A 74 RLQVGEVSEPVKSEFGYHVIKRLG 97 (97)
T ss_dssp TCTTSCBCCCEECSSCEEEEEECC
T ss_pred cCCCCCccccEEECCEEEEEEEeC
Confidence 999999999999999999999974
No 6
>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A
Probab=99.95 E-value=1.5e-27 Score=176.97 Aligned_cols=98 Identities=35% Similarity=0.652 Sum_probs=80.9
Q ss_pred CccCCCCCceEEEEEEEecCc-----------------chHHHH----HHHHhcCCccCCCCCChhcHHHHHHHhCCCCC
Q 043515 51 SADGLGTCTYVKARHILCEKQ-----------------GKINEA----YKKLQDGWLSNGDKVPQAEFSKIAAEYSECPS 109 (160)
Q Consensus 51 n~~~f~~p~~v~v~hIlv~~~-----------------~~A~~a----~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~s 109 (160)
+...|..|++|+++||||+.. +.|+++ +++|+.| +.+|++||++||+|++
T Consensus 5 ~~~~~~~~~~v~~~HILi~~~~~~~p~~~~~~~~~~~~~~A~~~~~~i~~~l~~G---------~~~F~~lA~~~S~~~s 75 (123)
T 3i6c_A 5 GKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSG---------EEDFESLASQFSDCSS 75 (123)
T ss_dssp ------CCSEEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHHHT---------SSCHHHHHHHHCSSGG
T ss_pred CccccCCCcEEEEEEEEEecCCccCccccchhhhhhHHHHHHHHHHHHHHHHHcC---------cccHHHHHHHhCCCch
Confidence 445899999999999999842 234433 4466666 3699999999999989
Q ss_pred CCCCCccccccCCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeE
Q 043515 110 GKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEG 157 (160)
Q Consensus 110 a~~GGdlG~~~~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~ 157 (160)
+.+||+|||+.+++|+|+|.+++|+|++|+||+||+|++|||||+|++
T Consensus 76 a~~GGdLG~~~~~~l~~~f~~a~f~l~~GeiS~pv~t~~G~hIi~v~E 123 (123)
T 3i6c_A 76 AKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 123 (123)
T ss_dssp GGGTTEEEEEETTTSCHHHHHHHHHSCTTCBCSCEEETTEEEEEEECC
T ss_pred hhhCCceeeEcCCCCCHHHHHHHHhCCCCCccccEEECCEEEEEEEeC
Confidence 999999999999999999999999999999999999999999999975
No 7
>2lj4_A Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT; tbpin1; NMR {Trypanosoma brucei}
Probab=99.94 E-value=1.8e-27 Score=174.43 Aligned_cols=91 Identities=29% Similarity=0.535 Sum_probs=80.9
Q ss_pred CCceEEEEEEEecCcc-----------------------hHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCC
Q 043515 57 TCTYVKARHILCEKQG-----------------------KINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKG 113 (160)
Q Consensus 57 ~p~~v~v~hIlv~~~~-----------------------~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~G 113 (160)
.|++|+++||||...+ .+++++++|.+| +.+|++||++||+|+++.+|
T Consensus 1 ~pe~vrasHILi~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~i~~g---------~~~F~~lA~~~Sd~~sa~~G 71 (115)
T 2lj4_A 1 MSEKLRAAHLLVKFSGSRNPVSRRTGDSTADVTYEDAIKELQKWSQRIASG---------EVSFEEAASQRSDCGSYASG 71 (115)
T ss_dssp CCCEEEEEEEEECCTTSSCCCCTTTSSCCTTSCHHHHHHHHHHHHHHHHHT---------SSCHHHHHHHHCCSGGGGTT
T ss_pred CCCcEEEEEEEEecCCccChhhhhhccccccccHHHHHHHHHHHHHHHHcC---------chhHHHHHHHhCCCcccccC
Confidence 4789999999995321 245677777777 36899999999988899999
Q ss_pred CccccccCCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEe
Q 043515 114 GDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCE 156 (160)
Q Consensus 114 GdlG~~~~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~ 156 (160)
|+|||+.+++|+|+|.+++|+|++|+||+||+|++|||||+|.
T Consensus 72 GdLG~~~~~~~~~~f~~a~~~l~~GeiS~pv~t~~G~HIIkl~ 114 (115)
T 2lj4_A 72 GDLGFFSSGEMMKPFEDAVRALKIGDISPIVQTDSGLHIIKRL 114 (115)
T ss_dssp SEEEEEETTSSCHHHHHHHTTSCBTCBCCCEECSSSEEEEEEC
T ss_pred CccceecCCCCCchHHHHHhcCCCCCCCCcEEeCCeEEEEEEe
Confidence 9999999999999999999999999999999999999999986
No 8
>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}
Probab=99.94 E-value=1.4e-27 Score=167.81 Aligned_cols=90 Identities=40% Similarity=0.693 Sum_probs=86.2
Q ss_pred CceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCcccccc-CCCCcHHHHHHHhcCC
Q 043515 58 CTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP-RGKMAGPFQEVSFNTP 136 (160)
Q Consensus 58 p~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~-~~~l~p~f~~a~f~L~ 136 (160)
+++++++||+|+.++.|++++++|++| .+|++||++||+|+++.+||+|||++ ++.|+|+|.+++|+|+
T Consensus 2 ~~~~~~~hIl~~~~~~A~~i~~~l~~g----------~~F~~lA~~~S~~~s~~~gG~lg~~~~~~~l~~~f~~a~~~l~ 71 (93)
T 1zk6_A 2 SGKIRASHILVADKKTAEEVEKKLKKG----------EKFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFSKAAFKLK 71 (93)
T ss_dssp -CCEEEEEEEESSHHHHHHHHHHHHHT----------CCHHHHHHHHCCSGGGGGTTEEEEECTTTSSCTTHHHHHHHSC
T ss_pred CCEEEEEEEEeccHHHHHHHHHHHHCC----------CCHHHHHHHhCCCchhhhCCeeeeecccccCCHHHHHHHHcCC
Confidence 368999999999999999999999998 89999999999999889999999999 9999999999999999
Q ss_pred CCCccCcEEeCCeEEEEEEeE
Q 043515 137 VGVTSAPFKSTHGYHIILCEG 157 (160)
Q Consensus 137 ~GevS~Piks~~GyhIIkV~~ 157 (160)
+|+||+||+|++|||||+|++
T Consensus 72 ~G~is~pv~t~~G~hIi~v~~ 92 (93)
T 1zk6_A 72 TGEVSDPVKTQYGYHIIKKTE 92 (93)
T ss_dssp TTCBCCCEECSSCEEEEEEEE
T ss_pred CCCccceEEECCEEEEEEEec
Confidence 999999999999999999986
No 9
>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A
Probab=99.94 E-value=3.8e-27 Score=168.36 Aligned_cols=91 Identities=24% Similarity=0.418 Sum_probs=83.6
Q ss_pred ceEEEEEEEecCc------------chHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCCCCcH
Q 043515 59 TYVKARHILCEKQ------------GKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAG 126 (160)
Q Consensus 59 ~~v~v~hIlv~~~------------~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~~l~p 126 (160)
++|+++||+|+.+ ..|++++.+|++| .+|++||++||+|+++.+||+|||+.+++|+|
T Consensus 1 ~~~~~~hIli~~~~~~~~~~~~~a~~~a~~i~~~l~~g----------~~F~~lA~~~S~~~s~~~gG~lg~~~~~~l~~ 70 (103)
T 2pv1_A 1 TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNG----------ADFGKLAIAHSADQQALNGGQMGWGRIQELPG 70 (103)
T ss_dssp CCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHTT----------CCHHHHHHHHCCSTTGGGTTEEEEECGGGSCH
T ss_pred CcEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC----------CCHHHHHHHhCCCcccccCCccceEchhhcCH
Confidence 3699999999753 2467888888888 89999999999999889999999999999999
Q ss_pred HHHHHHhcCCCCCccCcEEeCCeEEEEEEeEEc
Q 043515 127 PFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK 159 (160)
Q Consensus 127 ~f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr 159 (160)
+|.+++|+|++|+||+||+|++|||||+|++++
T Consensus 71 ~f~~a~~~l~~G~is~pv~t~~G~hii~v~~~r 103 (103)
T 2pv1_A 71 IFAQALSTAKKGDIVGPIRSGVGFHILKVNDLR 103 (103)
T ss_dssp HHHHHTTTCCTTCEEEEEEETTEEEEEEEEEEC
T ss_pred HHHHHHHcCCCCCeeccEEECCEEEEEEEEEEC
Confidence 999999999999999999999999999999985
No 10
>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli}
Probab=99.93 E-value=7.7e-27 Score=167.42 Aligned_cols=91 Identities=21% Similarity=0.424 Sum_probs=86.4
Q ss_pred ceEEEEEEEe--cCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCccccccCCCCcHHHHHHHhcC
Q 043515 59 TYVKARHILC--EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPRGKMAGPFQEVSFNT 135 (160)
Q Consensus 59 ~~v~v~hIlv--~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~~~~l~p~f~~a~f~L 135 (160)
++++++|||+ +.++.|++++++|++| ++|++||++||+|+ ++.+||+|||+.+++|+|+|++++|+
T Consensus 2 ~~~~~~hIl~~~~~~~~A~~i~~~l~~G----------~~F~~lA~~~S~d~~sa~~GGdlG~~~~~~l~~~f~~a~~~- 70 (102)
T 2kgj_A 2 QPQRTRYSIIQTKTEDEAKAVLDELNKG----------GDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLK- 70 (102)
T ss_dssp CCCEEEEEEEEESSHHHHHHHHHHHHHT----------SCHHHHHHHTCTTHHHHTTTSEEEEEETTCCCHHHHTTCCC-
T ss_pred CEEEEEeeecChhhHHHHHHHHHHHHCC----------CCHHHHHHHhCCCchhhhcCCccceecccccCHHHHHHHhc-
Confidence 5799999999 6777899999999998 89999999999999 89999999999999999999999999
Q ss_pred CCCCccCcEEeCCeEEEEEEeEEcC
Q 043515 136 PVGVTSAPFKSTHGYHIILCEGRKN 160 (160)
Q Consensus 136 ~~GevS~Piks~~GyhIIkV~~rr~ 160 (160)
++|+||+||+|++|||||+|+++++
T Consensus 71 ~~GeiS~pv~t~~G~hIikv~~~~~ 95 (102)
T 2kgj_A 71 EKGQLSGVIKSSVGFLIVRLDDIQA 95 (102)
T ss_dssp STTCEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCCccccEEECCEEEEEEEeeccc
Confidence 9999999999999999999999875
No 11
>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus}
Probab=99.93 E-value=4.2e-26 Score=165.08 Aligned_cols=92 Identities=33% Similarity=0.464 Sum_probs=82.9
Q ss_pred CCceEEEEEEEecC---------------cchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCcccccc
Q 043515 57 TCTYVKARHILCEK---------------QGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFP 120 (160)
Q Consensus 57 ~p~~v~v~hIlv~~---------------~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~ 120 (160)
.|++|+++||+|+. ...|++++++|++| +.+|++||++||+|+ ++.+||+|||+.
T Consensus 4 ~~~~~~~~hIli~~~~~~~~~~~~~~~~~~~~a~~i~~~l~~g---------~~~F~~lA~~~S~d~~s~~~gG~lG~~~ 74 (111)
T 2jzv_A 4 GSDSKKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKD---------PSKFGEIAKKESMDTGSAKKDGELGYVL 74 (111)
T ss_dssp CCSEEEEEEEEEEBCSCSSCSSSBCHHHHHHHHHHHHHHHHSC---------TTSHHHHHHHHCSCHHHHTTTTEEEEEE
T ss_pred CCcEEEEEEEEEECCCCCChhhhhhHHHHHHHHHHHHHHHHcC---------cccHHHHHHHHCCCcchhhhCCccceec
Confidence 46899999999972 23467788888876 479999999999998 899999999999
Q ss_pred CCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeE
Q 043515 121 RGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEG 157 (160)
Q Consensus 121 ~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~ 157 (160)
++.|+++|.+++|+|++|+||+||+|++|||||+|++
T Consensus 75 ~~~l~~~f~~a~~~l~~G~is~pv~t~~G~hIi~v~~ 111 (111)
T 2jzv_A 75 KGQTDKDFEKALFKLKDGEVSEVVKSSFGYHIIKADK 111 (111)
T ss_dssp TTSSCHHHHHHHHTCCTTCBCCCEEETTEEEEEEECC
T ss_pred CCcccHHHHHHHHhCCCCCcCccEEECCEEEEEEEeC
Confidence 9999999999999999999999999999999999974
No 12
>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1
Probab=99.92 E-value=1.2e-26 Score=175.16 Aligned_cols=98 Identities=34% Similarity=0.565 Sum_probs=84.1
Q ss_pred CCCccCCCCCceEEEEEEEecCc---------------------ch----HHHHHHHHhcCCccCCCCCChh-cHHHHHH
Q 043515 49 GKSADGLGTCTYVKARHILCEKQ---------------------GK----INEAYKKLQDGWLSNGDKVPQA-EFSKIAA 102 (160)
Q Consensus 49 ~~n~~~f~~p~~v~v~hIlv~~~---------------------~~----A~~a~~kl~~G~l~~~~~~~~~-~F~~lAk 102 (160)
..|+++|..+++|+++||||+.. +. +++++.+|+.| . +|++||+
T Consensus 15 ~~~~~~f~~~~~v~~~HILi~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~a~~i~~~l~~G----------~~~F~~lA~ 84 (139)
T 1j6y_A 15 VPRGSHMASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSG----------KANFEEVAT 84 (139)
T ss_dssp -----CCSSCCSCEEECCEECSCTTSSSSSCSCCCSCCCSCCCHHHHHHHHHHHHHHHHSS----------CCCCHHHHH
T ss_pred HHhHHHcCCCCeEEEEEEEEecCccccccccccccccccchHHHHHHHHHHHHHHHHHHcC----------cccHHHHHH
Confidence 57899999999999999999753 11 34677778877 5 6999999
Q ss_pred HhCCCCCCCCCCccccccCCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEe
Q 043515 103 EYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCE 156 (160)
Q Consensus 103 ~yS~d~sa~~GGdlG~~~~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~ 156 (160)
+||+|+++.+||+|||+.+++|+|+|++++|+|++|+||+||+|++|||||+|+
T Consensus 85 ~~S~~~sa~~GGdLG~~~~~~l~~~f~~a~~~l~~GeiS~pv~t~~G~hIikv~ 138 (139)
T 1j6y_A 85 RVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRT 138 (139)
T ss_dssp HSSCHHHHHTCSEEEECSSSSSCTHHHHHHHHCCSSSCCSCEEETTEEECCCSC
T ss_pred HhccCchhhcCCeeeeecccccCHHHHHHHHcCCCCCccccEEECCEEEEEEEe
Confidence 999988888999999999999999999999999999999999999999999986
No 13
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=99.92 E-value=2.3e-25 Score=172.73 Aligned_cols=95 Identities=36% Similarity=0.670 Sum_probs=80.8
Q ss_pred CCCCCceEEEEEEEecC-----------------cchHHHHH----HHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCC
Q 043515 54 GLGTCTYVKARHILCEK-----------------QGKINEAY----KKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKK 112 (160)
Q Consensus 54 ~f~~p~~v~v~hIlv~~-----------------~~~A~~a~----~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~ 112 (160)
.+..+++|+++||||+. ++.|++++ ++|++| +.+|++||++||+|+++.+
T Consensus 51 ~~~~~~~v~~~HILi~~~~~~~p~~~~~~~~~~~~~~A~~~~~~i~~~l~~g---------~~~F~~lA~~~Sd~~sa~~ 121 (166)
T 3tc5_A 51 GQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSG---------EEDFESLASQFSDCSSAKA 121 (166)
T ss_dssp ---CCSCEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHHHT---------SSCHHHHHHHHCSSGGGGG
T ss_pred ccccccceeEeeeEEecccccCccccchhhhhhHHHHHHHHHHHHHHHHHcC---------ccCHHHHHHHhCcccHHhc
Confidence 46678999999999983 22344444 466666 3699999999999989999
Q ss_pred CCccccccCCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeE
Q 043515 113 GGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEG 157 (160)
Q Consensus 113 GGdlG~~~~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~ 157 (160)
||||||+.+++|+++|++++|+|++|+||+||+|++|||||+|++
T Consensus 122 GGdLG~~~~~~l~~~f~~a~f~l~~GeiS~pv~t~~G~hIi~v~e 166 (166)
T 3tc5_A 122 RGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 166 (166)
T ss_dssp TTEEEEECTTSSCHHHHHHHHHSCTTCBCCCEEETTEEEEEEECC
T ss_pred CCccceecccccCHHHHHHHHhCCCCCCcccEEECCEEEEEEEeC
Confidence 999999999999999999999999999999999999999999974
No 14
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=99.92 E-value=4.6e-25 Score=171.99 Aligned_cols=98 Identities=31% Similarity=0.579 Sum_probs=85.6
Q ss_pred CCccCC-----CCCceEEEEEEEecCc------------------chH----HHHHHHHhcCCccCCCCCChh-cHHHHH
Q 043515 50 KSADGL-----GTCTYVKARHILCEKQ------------------GKI----NEAYKKLQDGWLSNGDKVPQA-EFSKIA 101 (160)
Q Consensus 50 ~n~~~f-----~~p~~v~v~hIlv~~~------------------~~A----~~a~~kl~~G~l~~~~~~~~~-~F~~lA 101 (160)
.|++.| ..+++++++||||+.. +.| ++++++|+.| . +|++||
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~hIlv~~~~~~~p~~~~~~~~~~~~~~~A~~~~~~i~~~l~~G----------~~~F~~lA 121 (177)
T 1yw5_A 52 KFKNNGYKPLVNEDGQVRVSHLLIKNNQSRKPKSWKSPDGISRTRDESIQILKKHLERILSG----------EVKLSELA 121 (177)
T ss_dssp HHHHTTSCCCCCTTSCEEEEEEEECCTTSSSCCBTTBTTCCCCCHHHHHHHHHHHHHHHHHT----------SSCHHHHH
T ss_pred HhHhhhcccccCCcceEEEEEEEEecCCccCcccccccccchhHHHHHHHHHHHHHHHHHcC----------chhHHHHH
Confidence 466677 6889999999999852 222 3446677777 5 799999
Q ss_pred HHhCCCCCCCCCCccccccCCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeE
Q 043515 102 AEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEG 157 (160)
Q Consensus 102 k~yS~d~sa~~GGdlG~~~~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~ 157 (160)
++||+|+++.+||+|||+.+++|+++|++++|+|++|+||+||+|++|||||+|++
T Consensus 122 ~~~S~~~sa~~GGdLG~~~~~~l~~~f~~a~f~L~~GeiS~pv~t~~G~hIikv~~ 177 (177)
T 1yw5_A 122 NTESDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSNIIETNSGVHILQRTG 177 (177)
T ss_dssp HHHCCSGGGGGTTEEEEECTTSSCHHHHHHHHTSCTTCBCCCEEETTEEEEEEECC
T ss_pred HHhCCCcchhcCCccceecccccCHHHHHHHHcCCCCCcCCeEEECCEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999974
No 15
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}
Probab=99.90 E-value=4e-24 Score=172.95 Aligned_cols=105 Identities=31% Similarity=0.578 Sum_probs=93.9
Q ss_pred CCCccCCCCCceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCCh---hcHHHHHHHhCCCCCC-CCCCccccccCCCC
Q 043515 49 GKSADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQ---AEFSKIAAEYSECPSG-KKGGDLGWFPRGKM 124 (160)
Q Consensus 49 ~~n~~~f~~p~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~---~~F~~lAk~yS~d~sa-~~GGdlG~~~~~~l 124 (160)
..|++.|..|++++++||+|+.++.|++++.+|+.+ ..+ .+|++||++||.|+++ .+||++||++.++|
T Consensus 101 ~~~~~~f~~~~~~~~~~I~~~~~~~A~~~~~~l~~~-------~g~~~~~~F~~lA~~~S~~~~~~~~gGdlg~~~~~~l 173 (252)
T 3rfw_A 101 DQNKDKYVKPARVQAKHILVATEKEAKDIINELKGL-------KGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTM 173 (252)
T ss_dssp HHHGGGSEECCEEEEEEEEESSHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHCCCTTTGGGTTEEEEECSSSS
T ss_pred HHhHHhccccceEEEEEEEeCCHHHHHHHHHHHHhh-------cCCCccccHHHHHHHhCCCCchhhcCCcccccccccc
Confidence 357889999999999999999999999999999842 002 4999999999999944 56999999999999
Q ss_pred cHHHHHHHhcCCCCCcc-CcEEeCCeEEEEEEeEEcC
Q 043515 125 AGPFQEVSFNTPVGVTS-APFKSTHGYHIILCEGRKN 160 (160)
Q Consensus 125 ~p~f~~a~f~L~~GevS-~Piks~~GyhIIkV~~rr~ 160 (160)
+|+|.+++|.|++|+|| .||+|++|||||+|+++++
T Consensus 174 ~~~f~~a~~~l~~G~is~~pv~t~~G~hii~v~~~~~ 210 (252)
T 3rfw_A 174 VKPFTDAAFALKNGTITTTPVKTNFGYHVILKENSQA 210 (252)
T ss_dssp CHHHHHHHHHSCTTEECSSCEEETTEEEEEEEEEEEC
T ss_pred cHHHHHHHHcCCCCCccCceEEECCEEEEEEEEEecC
Confidence 99999999999999999 5999999999999999874
No 16
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}
Probab=99.84 E-value=5.8e-22 Score=166.34 Aligned_cols=98 Identities=21% Similarity=0.300 Sum_probs=86.8
Q ss_pred CCccCCCCCceEEEEEEEe-----------cCcchHHHHHHH-HhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCcc
Q 043515 50 KSADGLGTCTYVKARHILC-----------EKQGKINEAYKK-LQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDL 116 (160)
Q Consensus 50 ~n~~~f~~p~~v~v~hIlv-----------~~~~~A~~a~~k-l~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdl 116 (160)
.|++.| +..++++||+| .....|++++.+ |.+| .+|++||++||+|+ ++.+||+|
T Consensus 151 ~~~~~~--~~~~~~~~Ili~~~~~~~~~~~~~~~~a~~i~~~~l~~g----------~~F~~lA~~~S~d~~s~~~gG~l 218 (325)
T 3nrk_A 151 QNKDKV--GFEIRYRIISIAPENDSIQEENRLYKEVSEIRKSILADP----------SSFALIAGSPRNDPALRARRGMV 218 (325)
T ss_dssp HCHHHH--CEEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHCT----------THHHHHHHSTTSCHHHHHTTTEE
T ss_pred Hhhhhc--CcceEEEEEEEecCCCCccchHHHHHHHHHHHHHHHhCC----------CCHHHHHHHhCCCccccccCCcc
Confidence 345555 46789999999 445567888888 8888 89999999999998 56899999
Q ss_pred ccccCCCCc---HHHHHHHhcCCCCCccCcEEeCC-eEEEEEEeEEc
Q 043515 117 GWFPRGKMA---GPFQEVSFNTPVGVTSAPFKSTH-GYHIILCEGRK 159 (160)
Q Consensus 117 G~~~~~~l~---p~f~~a~f~L~~GevS~Piks~~-GyhIIkV~~rr 159 (160)
||++.++|+ |+|.+++|+|++|+||+||+|++ |||||+|++++
T Consensus 219 g~~~~~~l~~~~~~~~~a~~~l~~Geis~pv~t~~~G~hIikv~~~~ 265 (325)
T 3nrk_A 219 EWISSFDLYKYSKITATIAAPLPNGGVSEVFRDERKRYCILKIEGKR 265 (325)
T ss_dssp EEEEHHHHHHHCHHHHHHHTTCCTTCBCCCEECTTSCEEEEEEEEEE
T ss_pred cccccccccccCHHHHHHHHcCCCCCCCceEEeCCCeEEEEEEeccC
Confidence 999999999 99999999999999999999999 99999999985
No 17
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Probab=99.83 E-value=6.2e-21 Score=162.57 Aligned_cols=102 Identities=22% Similarity=0.371 Sum_probs=86.6
Q ss_pred CCCccCCCCCceEEEEEEEecCc------------chHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCcc
Q 043515 49 GKSADGLGTCTYVKARHILCEKQ------------GKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDL 116 (160)
Q Consensus 49 ~~n~~~f~~p~~v~v~hIlv~~~------------~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdl 116 (160)
..|++.|..|++++++||+|+.. ..|++++.+|+.| .+|+++|++||+|+++.+||++
T Consensus 142 ~~~~~~~~~~~~~~~~~i~i~~~~~~s~~~~~~~~~~a~~~~~~l~~g----------~~F~~lA~~~S~~~~~~~gG~l 211 (408)
T 1m5y_A 142 QQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNG----------ADFGKLAIAHSADQQALNGGQM 211 (408)
T ss_dssp HCC-------CCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHTT----------CCHHHHHHHHCCSTTGGGTTEE
T ss_pred HhhhhhcCCcccEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHCC----------CCHHHHHHHcCCCcccccCCcc
Confidence 35777899999999999999753 2467788888888 8999999999999998999999
Q ss_pred ccccCCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeEEcC
Q 043515 117 GWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN 160 (160)
Q Consensus 117 G~~~~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr~ 160 (160)
||+..+.|+|+|.+++|.|++|+||+||+|++|||||+|.++++
T Consensus 212 g~~~~~~l~~~~~~~~~~l~~G~vs~pv~~~~g~~iikv~~~~~ 255 (408)
T 1m5y_A 212 GWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRG 255 (408)
T ss_dssp EEECGGGSCHHHHTGGGTCCTTCEEEEEEETTEEEEEEEEEECC
T ss_pred cccchhhccHHHHHHHHhCCCCCccCeeecCCeEEEEEEEEecC
Confidence 99999999999999999999999999999999999999998763
No 18
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Probab=99.78 E-value=5.1e-19 Score=150.67 Aligned_cols=96 Identities=31% Similarity=0.495 Sum_probs=85.9
Q ss_pred CCCCCceEEEEEEEecCc---------chHHHHHHHHhcCCccCCCCCChh-cHHHHHHHhCCCC-CCCCCCccccccCC
Q 043515 54 GLGTCTYVKARHILCEKQ---------GKINEAYKKLQDGWLSNGDKVPQA-EFSKIAAEYSECP-SGKKGGDLGWFPRG 122 (160)
Q Consensus 54 ~f~~p~~v~v~hIlv~~~---------~~A~~a~~kl~~G~l~~~~~~~~~-~F~~lAk~yS~d~-sa~~GGdlG~~~~~ 122 (160)
.+..+++++++|||+... ..+++++.+|.+| . +|+++|++||.|+ ++.+||++||++++
T Consensus 258 ~~~~~~~~~~~~Il~~~~~~~~~~~a~~~a~~~~~~l~~g----------~~~f~~~A~~~s~~~~s~~~gg~lg~~~~~ 327 (408)
T 1m5y_A 258 KNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSG----------KTTFAAAAKEFSQDPGSANQGGDLGWATPD 327 (408)
T ss_dssp CCCCCEEEEEEEEEECCCSSSCHHHHHHHHHHHHHHHHTT----------SSCHHHHHHHHCCCTTTGGGTTEEEEECGG
T ss_pred CcccccchhhheeeecCCCCcCHHHHHHHHHHHHHHHHcC----------cccHHHHHHHhCCCcchhhcCCcCcccCcc
Confidence 455678999999999753 2356777888887 6 9999999999997 88999999999999
Q ss_pred CCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeEEc
Q 043515 123 KMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK 159 (160)
Q Consensus 123 ~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr 159 (160)
.|+|+|.+++|+|++|++|+||++++|||||+|++++
T Consensus 328 ~~~~~~~~a~f~l~~G~~s~~v~~~~g~~ii~v~~~~ 364 (408)
T 1m5y_A 328 IFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTR 364 (408)
T ss_dssp GSCHHHHHHHHTCCTTCBCCCEECSSCEEEEEEEEEE
T ss_pred cchHHHHHHHHcCCCCCccCcEeeCCeEEEEEEeeec
Confidence 9999999999999999999999999999999999986
No 19
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}
Probab=99.67 E-value=3.9e-17 Score=131.82 Aligned_cols=85 Identities=12% Similarity=0.174 Sum_probs=75.5
Q ss_pred CCCccCCCCCceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCCCCcHHH
Q 043515 49 GKSADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128 (160)
Q Consensus 49 ~~n~~~f~~p~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~~l~p~f 128 (160)
.+|++.|..|++|+++||++.++ +++++|+.| .+|+ -+|++||++.++|+|+|
T Consensus 124 ~~~~~~f~~~~~v~~~~i~~~~~----~~~~~l~~g----------~~f~-------------l~g~lg~~~~~~l~~~~ 176 (252)
T 3rgc_A 124 EQNKDKFTFYTQINANIYLSNNP----QTLENIKNT----------KKTI-------------LKPQNASLNTSNADPRL 176 (252)
T ss_dssp HTCGGGCCEESEEEEEEEECSCH----HHHHHHHHH----------CCCC-------------SCCEEEEEETTTSCHHH
T ss_pred HhCHHhcCCCceEEEEEecCCCH----HHHHHHHhC----------CCcc-------------cccccceecHHhcCHHH
Confidence 46889999999999999998653 467788887 6776 26899999999999999
Q ss_pred HHHHhcCCCCCccCcEEeCCeEEEEEEeEEcC
Q 043515 129 QEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN 160 (160)
Q Consensus 129 ~~a~f~L~~GevS~Piks~~GyhIIkV~~rr~ 160 (160)
.+++++|++|+||+||+|++|||||+|+++++
T Consensus 177 ~~a~~~l~~G~is~pv~t~~G~hiikv~~~~~ 208 (252)
T 3rgc_A 177 LGLLSQIPVGSFSPVLNGKNGYELYEVKSKDG 208 (252)
T ss_dssp HHHHHHSCTTCBCCCBTTTTCEEEEEEEECSC
T ss_pred HHHHHcCCCCCcCCcEEeCCeEEEEEEecccC
Confidence 99999999999999999999999999999864
No 20
>2k3d_A LIN0334 protein; alpha beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Listeria innocua CLIP11262}
Probab=22.39 E-value=18 Score=24.46 Aligned_cols=14 Identities=29% Similarity=0.802 Sum_probs=12.0
Q ss_pred cccccccccccCCC
Q 043515 6 QNFKFDKLDFSPMG 19 (160)
Q Consensus 6 ~~~~~~~~~~~~~~ 19 (160)
++++|+++..+|||
T Consensus 22 ks~~it~i~~NPMG 35 (87)
T 2k3d_A 22 NTVTFTNEEFNPIG 35 (87)
T ss_dssp CCEEECCCEEETTE
T ss_pred cEEEEEEEEeCCCc
Confidence 46788999999999
Done!