BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043517
(956 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 129/516 (25%), Positives = 231/516 (44%), Gaps = 74/516 (14%)
Query: 343 MLSILVFVSRDGLLPIGLFICLAYASKKLPCFRATARNLPVCSSLGLVTAICTGKTSDLS 402
++ I+V +GLL + +CL +K++ +NL +LG + IC+ KT L+
Sbjct: 299 LIGIIVANVPEGLLAT-VTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLT 357
Query: 403 LDHANMAELWI--------ATDN----SFIKSTSA--------------------DVLDA 430
+ +A +W T+N SF K+++ + L
Sbjct: 358 QNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPI 417
Query: 431 LREAIATTSYXXXXXXXXXXXXXWAKEFLDVDGDKMKQNCT--VEAFNISKNRAGLLLKW 488
L+ A+A + KE M++ T VE S N+ L +
Sbjct: 418 LKRAVAGDASESALLKCIELCCGSVKE--------MRERYTKIVEIPFNSTNKYQLSIHK 469
Query: 489 NGSESDGDNSVHIHWRGSPEIILSMCTHYLDRHGTLQTLDEHKRDAFNNFIRDIEANHHS 548
N + ++ + + + +G+PE IL C+ L HG Q LDE +DAF N +E
Sbjct: 470 NPNTAEPRHLLVM--KGAPERILDRCSSIL-IHGKEQPLDEELKDAFQNAY--LELGGLG 524
Query: 549 LRCISFACKRV---EQ-----QNEEEIIELTECGLTWLGLVRLKSAYASEVKQAIEDCRE 600
R + F C EQ Q + + + L ++GL+ + + V A+ CR
Sbjct: 525 ERVLGF-CHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCR- 582
Query: 601 SAGIKIKLILEDDINIARLIAINSGLILK--------------PGAEDHSNGYDAAVIEA 646
SAGIK+ ++ D A+ IA G+I + P ++ + A V+
Sbjct: 583 SAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHG 642
Query: 647 SVFRS-SSEETRSLMVDNVR-VMANASPLDKLLMVQCLKQKGEVVAVTGMSTRDAPSLKE 704
S + +SE+ ++ + V A SP KL++V+ +++G +VAVTG D+P+ K+
Sbjct: 643 SDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKK 702
Query: 705 ADVGVSIGERSAQFARDCSDIVILDENFTTIAANLKWGRCVCNNIRKFIQLHLTXXXXXX 764
AD+GV++G + ++ +D+++LD+NF +I ++ GR + +N++K I LT
Sbjct: 703 ADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEI 762
Query: 765 XXXXXXXIFCGEIPLEPFQLLWVNLIMDVLGALALA 800
I +PL +L ++L D++ A++LA
Sbjct: 763 TPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLA 798
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 168 VMRDGRVRQIAVSEVVVGDVVCLQTGDQVPAD 199
V+R+G I EVVVGD+V ++ GD++PAD
Sbjct: 146 VIRNGEKMSINAEEVVVGDLVEVKGGDRIPAD 177
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 127/514 (24%), Positives = 229/514 (44%), Gaps = 70/514 (13%)
Query: 343 MLSILVFVSRDGLLPIGLFICLAYASKKLPCFRATARNLPVCSSLGLVTAICTGKTSDLS 402
++ I+V +GLL + +CL +K++ +NL +LG + IC+ KT L+
Sbjct: 293 LIGIIVANVPEGLLAT-VTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXKTGTLT 351
Query: 403 LDHANMAELWI--------ATDN----SFIKSTSA--------------------DVLDA 430
+ +A +W T+N SF K+++ + L
Sbjct: 352 QNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPI 411
Query: 431 LREAIATTSYXXXXXXXXXXXXXWAKEFLDVDGDKMKQNCTVEAFNISKNRAGLLLKWNG 490
L+ A+A + KE + + VE S N+ L + N
Sbjct: 412 LKRAVAGDASESALLKCIELCCGSVKEM------RERYTKIVEIPFNSTNKYQLSIHKNP 465
Query: 491 SESDGDNSVHIHWRGSPEIILSMCTHYLDRHGTLQTLDEHKRDAFNNFIRDIEANHHSLR 550
+ ++ + + + +G+PE IL C+ L HG Q LDE +DAF N +E R
Sbjct: 466 NTAEPRHLLVM--KGAPERILDRCSSIL-IHGKEQPLDEELKDAFQNAY--LELGGLGER 520
Query: 551 CISFACKRV---EQ-----QNEEEIIELTECGLTWLGLVRLKSAYASEVKQAIEDCRESA 602
+ F C EQ Q + + + L ++GL+ + + V A+ CR SA
Sbjct: 521 VLGF-CHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCR-SA 578
Query: 603 GIKIKLILEDDINIARLIAINSGLILK--------------PGAEDHSNGYDAAVIEASV 648
GIK+ ++ D A+ IA G+I + P ++ + A V+ S
Sbjct: 579 GIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSD 638
Query: 649 FRS-SSEETRSLMVDNVR-VMANASPLDKLLMVQCLKQKGEVVAVTGMSTRDAPSLKEAD 706
+ +SE+ ++ + V A SP KL++V+ +++G +VAVTG D+P+ K+AD
Sbjct: 639 LKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKAD 698
Query: 707 VGVSIGERSAQFARDCSDIVILDENFTTIAANLKWGRCVCNNIRKFIQLHLTXXXXXXXX 766
+GV++G + ++ +D+++LD+NF +I ++ GR + +N++K I LT
Sbjct: 699 IGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITP 758
Query: 767 XXXXXIFCGEIPLEPFQLLWVNLIMDVLGALALA 800
I +PL +L ++L D++ A++LA
Sbjct: 759 FLIFIIANIPLPLGTVTILCIDLGTDMVPAISLA 792
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 168 VMRDGRVRQIAVSEVVVGDVVCLQTGDQVPAD 199
V+R+G I EVVVGD+V ++ GD++PAD
Sbjct: 140 VIRNGEKMSINAEEVVVGDLVEVKGGDRIPAD 171
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 122/506 (24%), Positives = 213/506 (42%), Gaps = 54/506 (10%)
Query: 343 MLSILVFVSRDGLLPIGLFICLAYASKKLPCFRATARNLPVCSSLGLVTAICTGKTSDLS 402
++ I+V +GLL + +CL +K++ +NL +LG + IC+ KT L+
Sbjct: 329 LIGIIVANVPEGLLAT-VTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLT 387
Query: 403 LDHANMAELWIATDNSFIKSTSADVLDALREAIATTSYXXXXXXXXXXXXXWAKE----- 457
+ +A +W +T A + AT S A +
Sbjct: 388 QNRMTVAHMWFDNQIHEADTTENQSGAAFDKTSATWSALSRIAALCNRAVFQAGQDNVPI 447
Query: 458 ---------------------FLDVDGDKMKQNCTVEAFNISKNRAGLLLKWNGSESDGD 496
V G + + VE S N+ L + N E +
Sbjct: 448 LKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIVEIPFNSTNKYQLSIHEN--EKSSE 505
Query: 497 NSVHIHWRGSPEIILSMCTHYLDRHGTLQTLDEHKRDAFNNFIRDIEA-NHHSLRCISFA 555
+ + +G+PE IL C+ L +G + L E ++AF N ++ L FA
Sbjct: 506 SRYLLVMKGAPERILDRCSTIL-LNGAEEPLKEDMKEAFQNAYLELGGLGERVLGFCHFA 564
Query: 556 CKRVEQQNEEEIIELTE-----CGLTWLGLVRLKSAYASEVKQAIEDCRESAGIKIKLIL 610
++ NE + E L ++GL+ + + V A+ CR SAGIK+ ++
Sbjct: 565 LPE-DKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCR-SAGIKVIMVT 622
Query: 611 EDDINIARLIAINSGLILK--------------PGAEDHSNGYDAAVIEASVFRSSSEET 656
D A+ IA G+I + P + + A V+ S + S E
Sbjct: 623 GDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEV 682
Query: 657 RS--LMVDNVRVMANASPLDKLLMVQCLKQKGEVVAVTGMSTRDAPSLKEADVGVSIGER 714
L V A SP KL++V+ +++G +VAVTG D+P+LK+AD+GV++G
Sbjct: 683 LDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIS 742
Query: 715 SAQFARDCSDIVILDENFTTIAANLKWGRCVCNNIRKFIQLHLTXXXXXXXXXXXXXIFC 774
+ ++ +D+++LD+NF +I ++ GR + +N++K I LT I
Sbjct: 743 GSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGN 802
Query: 775 GEIPLEPFQLLWVNLIMDVLGALALA 800
+PL +L ++L D++ A++LA
Sbjct: 803 VPLPLGTVTILCIDLGTDMVPAISLA 828
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 168 VMRDGRVRQIAVSEVVVGDVVCLQTGDQVPAD 199
V+RDG I VV GD+V ++ GD++PAD
Sbjct: 176 VIRDGEKSTINAEFVVAGDLVEVKGGDRIPAD 207
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 154/321 (47%), Gaps = 29/321 (9%)
Query: 504 RGSPEIILSMCTHYLDRHGTLQTLDEHKRDAFNNFIRDIEANHHSLRCISFACKRVEQQN 563
+G+PE +L C+ L + G LDE R+AF + R + F + +++
Sbjct: 518 KGAPERVLERCSSILIK-GQELPLDEQWREAFQTAYLSLGGLGE--RVLGFCQLYLSEKD 574
Query: 564 -------EEEIIELTECGLTWLGLVRLKSAYASEVKQAIEDCRESAGIKIKLILEDDINI 616
+ E + GL++ GLV + + V A+ CR +AGI++ ++ D
Sbjct: 575 YPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCR-TAGIRVIMVTGDHPIT 633
Query: 617 ARLIAINSGLILKPGAE-------------DHSNGYDA--AVIEASVFRS--SSEETRSL 659
A+ IA + G+I + G+E D N DA VI + SE +L
Sbjct: 634 AKAIAASVGIISE-GSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEAL 692
Query: 660 MVDNVRVMANASPLDKLLMVQCLKQKGEVVAVTGMSTRDAPSLKEADVGVSIGERSAQFA 719
V A SP KL++V+ ++ G +VAVTG D+P+LK+AD+GV++G + A
Sbjct: 693 RTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAA 752
Query: 720 RDCSDIVILDENFTTIAANLKWGRCVCNNIRKFIQLHLTXXXXXXXXXXXXXIFCGEIPL 779
++ +D+++LD+NF +I ++ GR + +N++K I LT +PL
Sbjct: 753 KNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPL 812
Query: 780 EPFQLLWVNLIMDVLGALALA 800
+L++ L D+ +++LA
Sbjct: 813 GCITILFIELCTDIFPSVSLA 833
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 333 GATSHNRYVEMLSILVFVSRDGLLPIGLFICLAYASKKLPCFRATARNLPVCSSLGLVTA 392
G T V ++I+V +GLL + +CL+ +K+L +NL +LG +
Sbjct: 324 GYTFLRAMVFFMAIVVAYVPEGLLAT-VTVCLSLTAKRLASKNCVVKNLEAVETLGSTSV 382
Query: 393 ICTGKTSDLSLDHANMAELWI 413
IC+ KT L+ + ++ LW
Sbjct: 383 ICSDKTGTLTQNRMTVSHLWF 403
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 168 VMRDGRVRQIAVSEVVVGDVVCLQTGDQVPAD 199
V+RDG QI ++VVGD+V ++ GD+VPAD
Sbjct: 181 VIRDGDKFQINADQLVVGDLVEMKGGDRVPAD 212
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 163/342 (47%), Gaps = 20/342 (5%)
Query: 466 MKQNCTVEAFNISKNRAGLLLKWNGSESDGDNSVHIHWRGSPEIILSMCTHYLDRHGTLQ 525
MK+ T+E S++R + + + ++S + +G+PE ++ C + R GT +
Sbjct: 479 MKKEFTLE---FSRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRCNYV--RVGTTR 533
Query: 526 T-LDEHKRDAFNNFIRDIEANHHSLRCISFACKRVEQQNEEEIIELT------ECGLTWL 578
+ ++ + I++ +LRC++ A + + EE +++ + E LT++
Sbjct: 534 VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSTKFMEYETDLTFV 593
Query: 579 GLVRLKSAYASEVKQAIEDCRESAGIKIKLILEDDINIARLIAINSGLILKPGAEDHSNG 638
G+V + EV +I+ CR+ AGI++ +I D+ A I G I +
Sbjct: 594 GVVGMLDPPRKEVMGSIQLCRD-AGIRVIMITGDNKGTAIAICRRIG-IFGENEDVADRA 651
Query: 639 YDAAVIEASVFRSSSEETRSLMVDNVRVMANASPLDKLLMVQCLKQKGEVVAVTGMSTRD 698
Y + E R A P K +V+ L+ E+ A+TG D
Sbjct: 652 YTGREFDDLPLAEQREACRRACC-----FARVEPTHKSKIVEYLQSFDEITAMTGDGVND 706
Query: 699 APSLKEADVGVSIGERSAQFARDCSDIVILDENFTTIAANLKWGRCVCNNIRKFIQLHLT 758
AP+LK+A++G+++G +A A+ S++V+ D+NF+TI A ++ GR + NN+++FI+ ++
Sbjct: 707 APALKKAEIGIAMGSGTA-VAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLIS 765
Query: 759 XXXXXXXXXXXXXIFCGEIPLEPFQLLWVNLIMDVLGALALA 800
L P QLLWVNL+ D L A AL
Sbjct: 766 SNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALG 807
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 103/274 (37%), Gaps = 60/274 (21%)
Query: 167 KVMRDGR--VRQIAVSEVVVGDVVCLQTGDQVPA--------------DGLFVHXXXXXX 210
KV R R V++I ++V GD+V + GD+VPA D +
Sbjct: 128 KVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSV 187
Query: 211 XXXXXXXP-----------CIFTGAKVVGGECSMLVTSVGENTETSMLMKLLSKDDRINR 259
P +F+G + G+ +V + G TE + D++
Sbjct: 188 IKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIR------DQMAA 241
Query: 260 QDYKESKLQISVDRMGSRMEKIWXXXXXXXXXXXXXGCFAWGDDDHDPEPKGGVRSTVKE 319
+ ++ LQ +D G ++ K+ G F +DP G
Sbjct: 242 TEQDKTPLQQKLDEFGEQLSKV-ISLICVAVWLINIGHF------NDPVHGG-------- 286
Query: 320 IMGEVVTKFIRRQGATSHNRYVEMLSILVFVSRDGLLPIGLFICLAYASKKLPCFRATAR 379
+IR GA Y ++ L + LP + CLA ++++ A R
Sbjct: 287 -------SWIR--GAI---YYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVR 334
Query: 380 NLPVCSSLGLVTAICTGKTSDLSLDHANMAELWI 413
+LP +LG + IC+ KT L+ + ++ +++I
Sbjct: 335 SLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 146/304 (48%), Gaps = 17/304 (5%)
Query: 504 RGSPEIILSMCTHYLDRHGTLQT-LDEHKRDAFNNFIRDIEANHHSLRCISFACKRVEQQ 562
+G+PE ++ C + R GT + + ++ + I++ +LRC++ A + +
Sbjct: 515 KGAPEGVIDRCNYV--RVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPK 572
Query: 563 NEEEIIELT------ECGLTWLGLVRLKSAYASEVKQAIEDCRESAGIKIKLILEDDINI 616
EE +++ + E LT++G+V + EV +I+ CR+ AGI++ +I D+
Sbjct: 573 REEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRD-AGIRVIMITGDNKGT 631
Query: 617 ARLIAINSGLILKPGAEDHSNGYDAAVIEASVFRSSSEETRSLMVDNVRVMANASPLDKL 676
A I G I E Y + E R A P K
Sbjct: 632 AIAICRRIG-IFGENEEVADRAYTGREFDDLPLAEQREACRRACC-----FARVEPSHKS 685
Query: 677 LMVQCLKQKGEVVAVTGMSTRDAPSLKEADVGVSIGERSAQFARDCSDIVILDENFTTIA 736
+V+ L+ E+ A+TG DAP+LK+A++G+++G +A A+ S++V+ D+NF+TI
Sbjct: 686 KIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTA-VAKTASEMVLADDNFSTIV 744
Query: 737 ANLKWGRCVCNNIRKFIQLHLTXXXXXXXXXXXXXIFCGEIPLEPFQLLWVNLIMDVLGA 796
A ++ GR + NN+++FI+ ++ L P QLLWVNL+ D L A
Sbjct: 745 AAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPA 804
Query: 797 LALA 800
AL
Sbjct: 805 TALG 808
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 104/274 (37%), Gaps = 60/274 (21%)
Query: 167 KVMRDGR--VRQIAVSEVVVGDVVCLQTGDQVPAD-----------------------GL 201
KV R R V++I ++V GD+V + GD+VPAD +
Sbjct: 128 KVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSV 187
Query: 202 FVHXXXXXXXXXXXXXP--CIFTGAKVVGGECSMLVTSVGENTETSMLMKLLSKDDRINR 259
H +F+G + G+ +V + G +TE + D++
Sbjct: 188 IKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIR------DQMAA 241
Query: 260 QDYKESKLQISVDRMGSRMEKIWXXXXXXXXXXXXXGCFAWGDDDHDPEPKGGVRSTVKE 319
+ ++ LQ +D G ++ K+ G F +DP G
Sbjct: 242 TEQDKTPLQQKLDEFGEQLSKV-ISLICVAVWLINIGHF------NDPVHGG-------- 286
Query: 320 IMGEVVTKFIRRQGATSHNRYVEMLSILVFVSRDGLLPIGLFICLAYASKKLPCFRATAR 379
+IR GA Y ++ L + LP + CLA ++++ A R
Sbjct: 287 -------SWIR--GAI---YYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVR 334
Query: 380 NLPVCSSLGLVTAICTGKTSDLSLDHANMAELWI 413
+LP +LG + IC+ KT L+ + ++ +++I
Sbjct: 335 SLPSVETLGCTSVICSXKTGTLTTNQMSVCKMFI 368
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 146/304 (48%), Gaps = 17/304 (5%)
Query: 504 RGSPEIILSMCTHYLDRHGTLQT-LDEHKRDAFNNFIRDIEANHHSLRCISFACKRVEQQ 562
+G+PE ++ C + R GT + + ++ + I++ +LRC++ A + +
Sbjct: 516 KGAPEGVIDRCNYV--RVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPK 573
Query: 563 NEEEIIELT------ECGLTWLGLVRLKSAYASEVKQAIEDCRESAGIKIKLILEDDINI 616
EE +++ + E LT++G+V + EV +I+ CR+ AGI++ +I D+
Sbjct: 574 REEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRD-AGIRVIMITGDNKGT 632
Query: 617 ARLIAINSGLILKPGAEDHSNGYDAAVIEASVFRSSSEETRSLMVDNVRVMANASPLDKL 676
A I G I E Y + E R A P K
Sbjct: 633 AIAICRRIG-IFGENEEVADRAYTGREFDDLPLAEQREACRRACC-----FARVEPSHKS 686
Query: 677 LMVQCLKQKGEVVAVTGMSTRDAPSLKEADVGVSIGERSAQFARDCSDIVILDENFTTIA 736
+V+ L+ E+ A+TG DAP+LK+A++G+++G +A A+ S++V+ D+NF+TI
Sbjct: 687 KIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTA-VAKTASEMVLADDNFSTIV 745
Query: 737 ANLKWGRCVCNNIRKFIQLHLTXXXXXXXXXXXXXIFCGEIPLEPFQLLWVNLIMDVLGA 796
A ++ GR + NN+++FI+ ++ L P QLLWVNL+ D L A
Sbjct: 746 AAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPA 805
Query: 797 LALA 800
AL
Sbjct: 806 TALG 809
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 104/274 (37%), Gaps = 60/274 (21%)
Query: 167 KVMRDGR--VRQIAVSEVVVGDVVCLQTGDQVPAD-----------------------GL 201
KV R R V++I ++V GD+V + GD+VPAD +
Sbjct: 129 KVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSV 188
Query: 202 FVHXXXXXXXXXXXXXP--CIFTGAKVVGGECSMLVTSVGENTETSMLMKLLSKDDRINR 259
H +F+G + G+ +V + G +TE + D++
Sbjct: 189 IKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIR------DQMAA 242
Query: 260 QDYKESKLQISVDRMGSRMEKIWXXXXXXXXXXXXXGCFAWGDDDHDPEPKGGVRSTVKE 319
+ ++ LQ +D G ++ K+ G F +DP G
Sbjct: 243 TEQDKTPLQQKLDEFGEQLSKV-ISLICVAVWLINIGHF------NDPVHGG-------- 287
Query: 320 IMGEVVTKFIRRQGATSHNRYVEMLSILVFVSRDGLLPIGLFICLAYASKKLPCFRATAR 379
+IR GA Y ++ L + LP + CLA ++++ A R
Sbjct: 288 -------SWIR--GAI---YYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVR 335
Query: 380 NLPVCSSLGLVTAICTGKTSDLSLDHANMAELWI 413
+LP +LG + IC+ KT L+ + ++ +++I
Sbjct: 336 SLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 369
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 146/304 (48%), Gaps = 17/304 (5%)
Query: 504 RGSPEIILSMCTHYLDRHGTLQT-LDEHKRDAFNNFIRDIEANHHSLRCISFACKRVEQQ 562
+G+PE ++ C + R GT + + ++ + I++ +LRC++ A + +
Sbjct: 515 KGAPEGVIDRCNYV--RVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPK 572
Query: 563 NEEEIIELT------ECGLTWLGLVRLKSAYASEVKQAIEDCRESAGIKIKLILEDDINI 616
EE +++ + E LT++G+V + EV +I+ CR+ AGI++ +I D+
Sbjct: 573 REEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRD-AGIRVIMITGDNKGT 631
Query: 617 ARLIAINSGLILKPGAEDHSNGYDAAVIEASVFRSSSEETRSLMVDNVRVMANASPLDKL 676
A I G I E Y + E R A P K
Sbjct: 632 AIAICRRIG-IFGENEEVADRAYTGREFDDLPLAEQREACRRACC-----FARVEPSHKS 685
Query: 677 LMVQCLKQKGEVVAVTGMSTRDAPSLKEADVGVSIGERSAQFARDCSDIVILDENFTTIA 736
+V+ L+ E+ A+TG DAP+LK+A++G+++G +A A+ S++V+ D+NF+TI
Sbjct: 686 KIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTA-VAKTASEMVLADDNFSTIV 744
Query: 737 ANLKWGRCVCNNIRKFIQLHLTXXXXXXXXXXXXXIFCGEIPLEPFQLLWVNLIMDVLGA 796
A ++ GR + NN+++FI+ ++ L P QLLWVNL+ D L A
Sbjct: 745 AAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPA 804
Query: 797 LALA 800
AL
Sbjct: 805 TALG 808
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 104/274 (37%), Gaps = 60/274 (21%)
Query: 167 KVMRDGR--VRQIAVSEVVVGDVVCLQTGDQVPAD-----------------------GL 201
KV R R V++I ++V GD+V + GD+VPAD +
Sbjct: 128 KVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSV 187
Query: 202 FVHXXXXXXXXXXXXXP--CIFTGAKVVGGECSMLVTSVGENTETSMLMKLLSKDDRINR 259
H +F+G + G+ +V + G +TE + D++
Sbjct: 188 IKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIR------DQMAA 241
Query: 260 QDYKESKLQISVDRMGSRMEKIWXXXXXXXXXXXXXGCFAWGDDDHDPEPKGGVRSTVKE 319
+ ++ LQ +D G ++ K+ G F +DP G
Sbjct: 242 TEQDKTPLQQKLDEFGEQLSKV-ISLICVAVWLINIGHF------NDPVHGG-------- 286
Query: 320 IMGEVVTKFIRRQGATSHNRYVEMLSILVFVSRDGLLPIGLFICLAYASKKLPCFRATAR 379
+IR GA Y ++ L + LP + CLA ++++ A R
Sbjct: 287 -------SWIR--GAI---YYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVR 334
Query: 380 NLPVCSSLGLVTAICTGKTSDLSLDHANMAELWI 413
+LP +LG + IC+ KT L+ + ++ +++I
Sbjct: 335 SLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 24/211 (11%)
Query: 557 KRVEQQNEEEIIELTECGLTWLGLVRLKSAYASEVKQAIEDCRESA-------------- 602
+ V+Q + ++ E G LG+ R + + E+ I C +
Sbjct: 492 EEVDQAYKNKVAEFATRGFRSLGVARKRGEGSWEI-LGIMPCMDPPRHDTYKTVCEAKTL 550
Query: 603 GIKIKLILEDDINIARLIAINSGLILKPGAEDHSNGYDAAVIEASVFRSSSEETRSLMVD 662
G+ IK++ D + IAR + GL +N Y+A + V+
Sbjct: 551 GLSIKMLTGDAVGIARETSRQLGL--------GTNIYNAERLGLGGGGDMPGSEVYDFVE 602
Query: 663 NVRVMANASPLDKLLMVQCLKQKGEVVAVTGMSTRDAPSLKEADVGVSIGERSAQFARDC 722
A P K +V+ L+Q+G +VA+TG DAPSLK+AD G+++ E S+ AR
Sbjct: 603 AADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAV-EGSSDAARSA 661
Query: 723 SDIVILDENFTTIAANLKWGRCVCNNIRKFI 753
+DIV L I LK R + + + ++
Sbjct: 662 ADIVFLAPGLGAIIDALKTSRQIFHRMYAYV 692
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 158 KRTSRRAAVKVMRDGRVRQIAVSEVVVGDVVCLQTGDQVPADGLFVHXXXXXXXXXXXXX 217
K+T AV V+RDG +++I EVV GD++ ++ G +PADG V
Sbjct: 173 KKTLALKAV-VLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALT 231
Query: 218 -----------PCIFTGAKVVGGECSMLVTSVGENT 242
+F + V GE +++T+ G+NT
Sbjct: 232 GESLAVDKHKGDQVFASSAVKRGEAFVVITATGDNT 267
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 112/264 (42%), Gaps = 36/264 (13%)
Query: 494 DGDNSVHIHWRGSPEIILSMCTHYLD-RHGTLQTLDEHKRDAFNNFIRDIEANHHSLRCI 552
DG + H +G+PE IL + D L +D++ LR +
Sbjct: 413 DGSGNWHRVSKGAPEQILELAKASNDLSKKVLSIIDKYA--------------ERGLRSL 458
Query: 553 SFACKRVEQQNEEEIIELTECGLTW--LGLVRLKSAYASEVKQAIEDCRESAGIKIKLIL 610
+ A + V ++ +E G W +GL+ L + + I + G+ +K+I
Sbjct: 459 AVARQVVPEKTKES------PGAPWEFVGLLPLFDPPRHDSAETIRRAL-NLGVNVKMIT 511
Query: 611 EDDINIARLIA--INSGLILKPGAEDHSNGYDAAVIEASVFRSSSEETRSLMVDNVRVMA 668
D + I + + G + P + DA + V EE +++ A
Sbjct: 512 GDQLAIGKETGRRLGMGTNMYPSSALLGTHKDANLASIPV-----EE----LIEKADGFA 562
Query: 669 NASPLDKLLMVQCLKQKGEVVAVTGMSTRDAPSLKEADVGVSIGERSAQFARDCSDIVIL 728
P K +V+ L+++ +V +TG DAP+LK+AD+G+++ + + AR SDIV+
Sbjct: 563 GVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVAD-ATDAARGASDIVLT 621
Query: 729 DENFTTIAANLKWGRCVCNNIRKF 752
+ + I + + R + ++ +
Sbjct: 622 EPGLSVIISAVLTSRAIFQRMKNY 645
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 167 KVMRDGRVRQIAVSEVVVGDVVCLQTGDQVPAD 199
KV+RDG+ + + +V GD+V ++ GD +PAD
Sbjct: 133 KVLRDGKWSEQEAAILVPGDIVSIKLGDIIPAD 165
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 9/171 (5%)
Query: 586 AYASEVKQAIEDCRESAGIKIKLILEDDINIARLIAINSGL--ILKPGAEDHSN-GYDAA 642
A ++EV+ A+E A K +I+ + + +IA++ L KP ++ G
Sbjct: 420 AVSNEVELALEKLEREA--KTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVG 477
Query: 643 VIEASVFRSSSEETRSLMVDNVRVMANASPLDKLLMVQCLKQKGEVVAVTGMSTRDAPSL 702
+I +RS+ +R L +D V+A P K V+ L+ K EVVA G DAP+L
Sbjct: 478 MITGDNWRSAEAISRELNLD--LVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPAL 534
Query: 703 KEADVGVSIGERSAQFARDCSDIVILDENFTTIAANLKWGRCVCNNIRKFI 753
+AD+G+++G S A + DIV++ ++ + A ++ R + I++ I
Sbjct: 535 AQADLGIAVGSGS-DVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNI 584
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 168 VMRDGRVRQIAVSEVVVGDVVCLQTGDQVPADGLFVH 204
V+RDG+ + V EV VGD+V ++ G+++P DG+ V
Sbjct: 137 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVE 173
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 9/171 (5%)
Query: 586 AYASEVKQAIEDCRESAGIKIKLILEDDINIARLIAINSGL--ILKPGAEDHSN-GYDAA 642
A ++EV+ A+E A K +I+ + + +IA++ L KP ++ G
Sbjct: 498 AVSNEVELALEKLEREA--KTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVG 555
Query: 643 VIEASVFRSSSEETRSLMVDNVRVMANASPLDKLLMVQCLKQKGEVVAVTGMSTRDAPSL 702
+I +RS+ +R L +D V+A P K V+ L+ K EVVA G DAP+L
Sbjct: 556 MITGDNWRSAEAISRELNLD--LVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPAL 612
Query: 703 KEADVGVSIGERSAQFARDCSDIVILDENFTTIAANLKWGRCVCNNIRKFI 753
+AD+G+++G S A + DIV++ ++ + A ++ R + I++ I
Sbjct: 613 AQADLGIAVGSGS-DVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNI 662
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 168 VMRDGRVRQIAVSEVVVGDVVCLQTGDQVPADGLFVH 204
V+RDG+ + V EV VGD+V ++ G+++P DG+ V
Sbjct: 215 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVE 251
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 9/168 (5%)
Query: 586 AYASEVKQAIEDCRESAGIKIKLILEDDINIARLIAINSGL--ILKPGAEDHSN-GYDAA 642
A ++EV+ A+E A K +I+ + + +IA++ L KP ++ G
Sbjct: 126 AVSNEVELALEKLEREA--KTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVG 183
Query: 643 VIEASVFRSSSEETRSLMVDNVRVMANASPLDKLLMVQCLKQKGEVVAVTGMSTRDAPSL 702
+I +RS+ +R L +D V+A P K V+ L+ K EVVA G DAP+L
Sbjct: 184 MITGDNWRSAEAISRELNLD--LVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPAL 240
Query: 703 KEADVGVSIGERSAQFARDCSDIVILDENFTTIAANLKWGRCVCNNIR 750
+AD+G+++G S A + DIV++ ++ + A ++ R + I+
Sbjct: 241 AQADLGIAVGSGS-DVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 9/168 (5%)
Query: 586 AYASEVKQAIEDCRESAGIKIKLILEDDINIARLIAINSGL--ILKPGAEDHSN-GYDAA 642
A ++EV+ A+E A K +I+ + + +IA++ L KP ++ G
Sbjct: 126 AVSNEVELALEKLEREA--KTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVG 183
Query: 643 VIEASVFRSSSEETRSLMVDNVRVMANASPLDKLLMVQCLKQKGEVVAVTGMSTRDAPSL 702
+I +RS+ +R L +D V+A P K V+ L+ K EVVA G DAP+L
Sbjct: 184 MITGDNWRSAEAISRELNLD--LVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPAL 240
Query: 703 KEADVGVSIGERSAQFARDCSDIVILDENFTTIAANLKWGRCVCNNIR 750
+AD+G+++G S A + DIV++ ++ + A ++ R + I+
Sbjct: 241 AQADLGIAVGSGS-DVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 665 RVMANASPLDKLLMVQCLKQKGEVVAVTGMSTRDAPSLKEADVGVSIGERSAQFARDCSD 724
+V+A P DK +V LK KG +VA+ G DAP+L +AD+G+++G + A + +
Sbjct: 595 KVVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGIAMGTGT-DVAIESAG 653
Query: 725 IVILDENFTTIAANLKWGRCVCNNIRK 751
+ +L + IA + +NIR+
Sbjct: 654 VTLLHGDLRGIAKARRLSESTMSNIRQ 680
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 163 RAAVKVMRDGRVRQIAVSEVVVGDVVCLQTGDQVPADGLFVHXXXXXXXXXXXXXPCIF- 221
+A ++ DG ++++ V VGD++ ++ G+++P DG P
Sbjct: 225 ESAHRIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSFVDESMVTGEPIPVA 284
Query: 222 --TGAKVVG------GECSMLVTSVGENTETSMLMKLLSKDDR 256
AKV+G G M VG +T + +++++S R
Sbjct: 285 KEASAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQR 327
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 9/161 (5%)
Query: 586 AYASEVKQAIEDCRESAGIKIKLILEDDINIARLIAINSGL--ILKPGAED-HSNGYDAA 642
A ++EV+ A+E A K +I+ + + +IA++ L KP ++ G
Sbjct: 106 AVSNEVELALEKLEREA--KTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRXGIKVG 163
Query: 643 VIEASVFRSSSEETRSLMVDNVRVMANASPLDKLLMVQCLKQKGEVVAVTGMSTRDAPSL 702
I +RS+ +R L +D V+A P K V+ L+ K EVVA G DAP+L
Sbjct: 164 XITGDNWRSAEAISRELNLD--LVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPAL 220
Query: 703 KEADVGVSIGERSAQFARDCSDIVILDENFTTIAANLKWGR 743
+AD+G+++G S A + DIV++ ++ + A ++ R
Sbjct: 221 AQADLGIAVGSGS-DVAVESGDIVLIRDDLRDVVAAIQLSR 260
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 168 VMRDGRVRQIAVSEVVVGDVVCLQTGDQVPADGLFV 203
V+RDG+ + V EV VGD+V ++ G+++P DG+ V
Sbjct: 16 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVV 51
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 629 KPGAED-HSNGYDAAVIEASVFRSSSEETRSLMVDNVRVMANASPLDKLLMVQCLKQKGE 687
KP ++ G I +RS+ +R L +D V+A P K V+ L+ K E
Sbjct: 28 KPAVQELKRXGIKVGXITGDNWRSAEAISRELNLD--LVIAEVLPHQKSEEVKKLQAK-E 84
Query: 688 VVAVTGMSTRDAPSLKEADVGVSIGERSAQFARDCSDIVILDENFTTIAANLK 740
VVA G DAP+L +AD+G+++G DIV++ ++ + A ++
Sbjct: 85 VVAFVGDGINDAPALAQADLGIAVG---------SGDIVLIRDDLRDVVAAIQ 128
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 667 MANASPLDKLLMVQCLKQKGEVVAVTGMSTRDAPSLKEADVGVSIGERSAQFARDCSDIV 726
A P +K V+ ++QK V A+ G DAP+L +ADVG++IG A + +DIV
Sbjct: 187 FAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDAPALAQADVGIAIGA-GTDVAVETADIV 244
Query: 727 ILDENFTTIAANLKWGR 743
++ + +AA ++ R
Sbjct: 245 LVRNDPRDVAAIVELSR 261
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 667 MANASPLDKLLMVQCLKQKGEVVAVTGMSTRDAPSLKEADVGVSIGERSAQFARDCSDIV 726
A P +K V+ ++QK V A+ G DAP+L +ADVG++IG A + +DIV
Sbjct: 187 FAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDAPALAQADVGIAIGA-GTDVAVETADIV 244
Query: 727 ILDENFTTIAANLKWGRCVCNNI 749
++ + +AA ++ R + +
Sbjct: 245 LVRNDPRDVAAIVELSRKTYSKL 267
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 474 AFNISKNRAGLLLKWNGSESDGDNSVHIHWRGSPEIILSMCTHYLDRHGTLQTLDEHKRD 533
FN S N+ L + N + S+ + + + +G+PE IL C+ L HG Q LDE +D
Sbjct: 99 PFN-STNKYQLSIHKNPNASEPKHLLVM--KGAPERILDRCSSIL-LHGKEQPLDEELKD 154
Query: 534 AFNN 537
AF N
Sbjct: 155 AFQN 158
>pdb|1Z9G|E Chain E, Crystal Structure Analysis Of Thermolysin Complexed With
The Inhibitor (R)-Retro-Thiorphan
Length = 316
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 50/137 (36%), Gaps = 20/137 (14%)
Query: 409 AELWIATDNSFIKSTSADVLDALREAIATTSYXXXXXXXXXXXXXWAKEFLDVDGDKMKQ 468
LW DN F S A +DA A T Y L DG+
Sbjct: 52 GSLWADADNQFFASYDAPAVDAHYYAGVTYDYYKN-----------VHNRLSYDGNNAAI 100
Query: 469 NCTVEAFNISKNRAGLLLKWNGSE---SDGDNSVHIHWRGSPEIILSMCTHYLDRHGTLQ 525
+V ++ N A WNGSE DGD I G +++ TH + + T
Sbjct: 101 RSSVH-YSQGYNNA----FWNGSEMVYGDGDGQTFIPLSGGIDVVAHELTHAVTDY-TAG 154
Query: 526 TLDEHKRDAFNNFIRDI 542
+ +++ A N I DI
Sbjct: 155 LIYQNESGAINEAISDI 171
>pdb|1LNA|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
Length = 316
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 50/137 (36%), Gaps = 20/137 (14%)
Query: 409 AELWIATDNSFIKSTSADVLDALREAIATTSYXXXXXXXXXXXXXWAKEFLDVDGDKMKQ 468
LW DN F S A +DA A T Y L DG+
Sbjct: 52 GSLWADADNQFFASYDAPAVDAHYYAGVTYDYYKN-----------VHNRLSYDGNNAAI 100
Query: 469 NCTVEAFNISKNRAGLLLKWNGSE---SDGDNSVHIHWRGSPEIILSMCTHYLDRHGTLQ 525
+V ++ N A WNGSE DGD I G +++ TH + + T
Sbjct: 101 RSSVH-YSQGYNNA----FWNGSEMVYGDGDGQTFIPLSGGIDVVAHELTHAVTDY-TAG 154
Query: 526 TLDEHKRDAFNNFIRDI 542
+ +++ A N I DI
Sbjct: 155 LIYQNESGAINEAISDI 171
>pdb|1TLP|E Chain E, Crystallographic Structural Analysis Of Phosphoramidates
As Inhibitors And Transition-State Analogs Of
Thermolysin
pdb|1TMN|E Chain E, Binding Of N-Carboxymethyl Dipeptide Inhibitors To
Thermolysin Determined By X-Ray Crystallography. A Novel
Class Of Transition- State Analogues For Zinc Peptidases
pdb|2TMN|E Chain E, Crystallographic Structural Analysis Of Phosphoramidates
As Inhibitors And Transition-State Analogs Of
Thermolysin
pdb|4TMN|E Chain E, Slow-And Fast-Binding Inhibitors Of Thermolysin Display
Different Modes Of Binding. Crystallographic Analysis Of
Extended Phosphonamidate Transition-State Analogues
pdb|5TMN|E Chain E, Slow-And Fast-Binding Inhibitors Of Thermolysin Display
Different Modes Of Binding. Crystallographic Analysis Of
Extended Phosphonamidate Transition-State Analogues
pdb|6TMN|E Chain E, Structures Of Two Thermolysin-inhibitor Complexes That
Differ By A Single Hydrogen Bond
pdb|8TLN|E Chain E, Structural Comparison Suggests That Thermolysin And
Related Neutral Proteases Undergo Hinge-Bending Motion
During Catalysis
pdb|1LNE|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
pdb|1LNF|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
pdb|1LNB|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
pdb|1LNC|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
pdb|1LND|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
pdb|1QF0|A Chain A, Thermolysin (E.C.3.4.24.27) Complexed With (2-Sulphanyl-3-
Phenylpropanoyl)-Phe-Tyr. Parameters For Zn-Bidentation
Of Mercaptoacyldipeptides In Metalloendopeptidase
pdb|1QF1|A Chain A, Thermolysin (E.C.3.4.24.27) Complexed With (2-
Sulphanylheptanoyl)-Phe-Ala. Parameters For
Zn-Bidentation Of Mercaptoacyldipeptides In
Metalloendopeptidase
pdb|1QF2|A Chain A, Thermolysin (E.C.3.4.24.27) Complexed With (2-Sulphanyl-3-
Phenylpropanoyl)-Gly-(5-Phenylproline). Parameters For
Zn- Monodentation Of Mercaptoacyldipeptides In
Metalloendopeptidase
pdb|1TLI|A Chain A, Thermolysin (2% Isopropanol Soaked Crystals)
pdb|2TLI|A Chain A, Thermolysin (5% Isopropanol Soaked Crystals)
pdb|3TLI|A Chain A, Thermolysin (10% Isopropanol Soaked Crystals)
pdb|1TLX|A Chain A, Thermolysin (Native)
pdb|2TLX|A Chain A, Thermolysin (Native)
pdb|4TLI|A Chain A, Thermolysin (25% Isopropanol Soaked Crystals)
pdb|5TLI|A Chain A, Thermolysin (60% Isopropanol Soaked Crystals)
pdb|6TLI|A Chain A, Thermolysin (60% Isopropanol Soaked Crystals)
pdb|7TLI|A Chain A, Thermolysin (90% Isopropanol Soaked Crystals)
pdb|8TLI|A Chain A, Thermolysin (100% Isopropanol Soaked Crystals)
pdb|1FJ3|A Chain A, Thermolysin (50% Acetone Soaked)
pdb|1FJO|A Chain A, Thermolysin (60% Acetone Soaked Crystals)
pdb|1FJQ|A Chain A, Thermolysin (70% Acetone Soaked Crystals)
pdb|1FJT|A Chain A, Thermolysin (50% Acetonitrile Soaked Crystals)
pdb|1FJU|A Chain A, Thermolysin (80% Acetonitrile Soaked Crystals)
pdb|1FJV|A Chain A, Thermolysin (60% Acetonitrile Soaked Crystals)
pdb|1FJW|A Chain A, Thermolysin (50 Mm Phenol Soaked)
pdb|1L3F|E Chain E, Thermolysin In The Absence Of Substrate Has An Open
Conformation
pdb|1OS0|A Chain A, Thermolysin With An Alpha-Amino Phosphinic Inhibitor
pdb|1PE5|A Chain A, Thermolysin With Tricyclic Inhibitor
pdb|1PE7|A Chain A, Thermolysin With Bicyclic Inhibitor
pdb|1PE8|A Chain A, Thermolysin With Monocyclic Inhibitor
pdb|1ZDP|E Chain E, Crystal Structure Analysis Of Thermolysin Complexed With
The Inhibitor (S)-Thiorphan
pdb|2A7G|E Chain E, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Z|A Chain A, Anomalous Substructure Of Thermolysin
pdb|1HYT|A Chain A, Re-Determination And Refinement Of The Complex Of
Benzylsuccinic Acid With Thermolysin And Its Relation To
The Complex With Carboxypeptidase A
pdb|1THL|A Chain A, Thermolysin Complexed With A Novel Glutaramide Derivative,
N-(1-(2(r, S)-carboxy-4-phenylbutyl)
Cyclopentylcarbonyl)-(s)-tryptophan
pdb|4TLN|A Chain A, Binding Of Hydroxamic Acid Inhibitors To Crystalline
Thermolysin Suggests A Pentacoordinate Zinc Intermediate
In Catalysis
pdb|5TLN|A Chain A, Binding Of Hydroxamic Acid Inhibitors To Crystalline
Thermolysin Suggests A Pentacoordinate Zinc Intermediate
In Catalysis
pdb|7TLN|A Chain A, Structural Analysis Of The Inhibition Of Thermolysin By An
Active- Site-directed Irreversible Inhibitor
pdb|3EIM|A Chain A, Metal Exchange In Thermolysin
pdb|3F28|A Chain A, Thermolysin Inhibition
pdb|3F2P|A Chain A, Thermolysin Inhibition
pdb|3FCQ|A Chain A, Thermolysin Inhibition
pdb|3FOR|A Chain A, Thermolysin Complexed With Bnpa (2-Benzyl-3-Nitro
Propanoic Acid Amide)
pdb|3P7P|E Chain E, Radiation Damage Study Of Thermolysin - 100k Structure A
(0.1 Mgy)
pdb|3P7Q|E Chain E, Radiation Damage Study Of Thermolysin - 100k Structure B
(2.5 Mgy)
pdb|3P7R|E Chain E, Radiation Damage Study Of Thermolysin - 100k Structure C
(4.9 Mgy)
pdb|3P7S|E Chain E, Radiation Damage Study Of Thermolysin - 100k Structure D
(7.2 Mgy)
pdb|3P7T|E Chain E, Radiation Damage Study Of Thermolysin - 160k Structure A
(0.1 Mgy)
pdb|3P7U|E Chain E, Radiation Damage Study Of Thermolysin - 160k Structure B
(2.4 Mgy)
pdb|3P7V|E Chain E, Radiation Damage Study Of Thermolysin - 160k Structure C
(4.8 Mgy)
pdb|3P7W|E Chain E, Radiation Damage Study Of Thermolysin - 160k Structure D
(7.1 Mgy)
pdb|1GXW|A Chain A, The 2.2 A Resolution Structure Of Thermolysin Crystallized
In Presence Of Potassium Thiocyanate
pdb|3T2H|E Chain E, Tetragonal Thermolysin In The Presence Of Tmao
pdb|3T2I|E Chain E, Tetragonal Thermolysin In The Presence Of Sarcosine
pdb|3T2J|E Chain E, Tetragonal Thermolysin In The Presence Of Betaine
pdb|3TMN|E Chain E, The Binding Of L-Valyl-L-Tryptophan To Crystalline
Thermolysin Illustrates The Mode Of Interaction Of A
Product Of Peptide Hydrolysis
Length = 316
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 50/137 (36%), Gaps = 20/137 (14%)
Query: 409 AELWIATDNSFIKSTSADVLDALREAIATTSYXXXXXXXXXXXXXWAKEFLDVDGDKMKQ 468
LW DN F S A +DA A T Y L DG+
Sbjct: 52 GSLWADADNQFFASYDAPAVDAHYYAGVTYDYYKN-----------VHNRLSYDGNNAAI 100
Query: 469 NCTVEAFNISKNRAGLLLKWNGSE---SDGDNSVHIHWRGSPEIILSMCTHYLDRHGTLQ 525
+V ++ N A WNGSE DGD I G +++ TH + + T
Sbjct: 101 RSSVH-YSQGYNNA----FWNGSEMVYGDGDGQTFIPLSGGIDVVAHELTHAVTDY-TAG 154
Query: 526 TLDEHKRDAFNNFIRDI 542
+ +++ A N I DI
Sbjct: 155 LIYQNESGAINEAISDI 171
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 668 ANASPLDKLLMVQCLKQKGEVVAVTGMSTRDAPSLKEADVGVSIGERSAQFARDCSDIVI 727
+N SP DK+ +++ LKQ G V + G DA +L ADV V++G +++ +DI++
Sbjct: 180 SNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSVAMGN-GVDISKNVADIIL 238
Query: 728 LDENFTTIAANLKWGRCVCNNI 749
+ + T+ +K + + N I
Sbjct: 239 VSNDIGTLLGLIKNRKRLSNAI 260
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 668 ANASPLDKLLMVQCLKQKGEVVAVTGMSTRDAPSLKEADVGVSIGERSAQFARDCSDIVI 727
+N SP DK+ +++ LKQ G V + G DA +L ADV V++G +++ +DI++
Sbjct: 180 SNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSVAMGN-GVDISKNVADIIL 238
Query: 728 LDENFTTIAANLKWGRCVCNNI 749
+ + T+ +K + + N I
Sbjct: 239 VSNDIGTLLGLIKNRKRLSNAI 260
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 668 ANASPLDKLLMVQCLKQKGEVVAVTGMSTRDAPSLKEADVGVSIGERSAQFARDCSDIVI 727
+N SP DK+ +++ LKQ G V + G DA +L ADV V++G +++ +DI++
Sbjct: 180 SNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSVAMGN-GVDISKNVADIIL 238
Query: 728 LDENFTTIAANLKWGRCVCNNI 749
+ + T+ +K + + N I
Sbjct: 239 VSNDIGTLLGLIKNRKRLSNAI 260
>pdb|4GER|A Chain A, Crystal Structure Of Gentlyase, The Neutral
Metalloprotease Of Paenibacillus Polymyxa
pdb|4GER|B Chain B, Crystal Structure Of Gentlyase, The Neutral
Metalloprotease Of Paenibacillus Polymyxa
pdb|4B52|A Chain A, Crystal Structure Of Gentlyase, The Neutral
Metalloprotease Of Paenibacillus Polymyxa
pdb|4B52|B Chain B, Crystal Structure Of Gentlyase, The Neutral
Metalloprotease Of Paenibacillus Polymyxa
Length = 304
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 488 WNGSE---SDGDNSVHIHWRGSPEIILSMCTH-------YLDRHGTLQTLDEHKRDAFNN 537
WNGS+ DGD S I + G P+++ TH L+ +G L+E D N
Sbjct: 108 WNGSQMTYGDGDGSTFIAFSGDPDVVGHELTHGVTEYTSNLEYYGESGALNEAFSDVIGN 167
Query: 538 FIR 540
I+
Sbjct: 168 DIQ 170
>pdb|1KEI|A Chain A, Thermolysin (substrate-free)
pdb|1KR6|A Chain A, Thermolysin Complexed With Z-d-glutamic Acid
(benzyloxycarbonyl-d- Glutamic Acid)
pdb|1KRO|A Chain A, Thermolysin Complexed With Z-D-Threonine
(Benzyloxycarbonyl-D- Threonine)
pdb|1KS7|A Chain A, Thermolysin Complexed With Z-D-Aspartic Acid
(Benzyloxycarbonyl-D- Aspartic Acid)
pdb|1KTO|A Chain A, Thermolysin Complexed With Z-d-alanine
(benzyloxycarbonyl-d-alanine)
pdb|1Y3G|E Chain E, Crystal Structure Of A Silanediol Protease Inhibitor Bound
To Thermolysin
pdb|1KJO|A Chain A, Thermolysin Complexed With Z-L-Threonine
(Benzyloxycarbonyl-L- Threonine)
pdb|1KJP|A Chain A, Thermolysin Complexed With Z-L-Glutamic Acid
(Benzyloxycarbonyl-L- Glutamic Acid)
pdb|1KKK|A Chain A, Thermolysin Complexed With Z-L-Aspartic Acid
(Benzyloxycarbonyl-L- Aspartic Acid)
pdb|1KL6|A Chain A, Thermolysin Complexed With Z-l-alanine
(benzyloxycarbonyl-l-alanine)
pdb|3DNZ|A Chain A, Thermolysin By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DO0|A Chain A, Thermolysin By Classical Hanging Drop Method After High X-
Ray Dose On Esrf Id14-2 Beamline
pdb|3DO1|A Chain A, Thermolysin By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3DO2|A Chain A, Thermolysin By Lb Nanotemplate Method After High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3FB0|A Chain A, Metal Exchange In Thermolysin
pdb|3FBO|A Chain A, Metal Exchange In Thermolysin
pdb|3FGD|A Chain A, Drugscore Fp: Thermoylsin In Complex With Fragment.
pdb|3FLF|A Chain A, Thermolysin Inhibition
pdb|3FV4|A Chain A, Thermolysin Inhibition
pdb|3FVP|A Chain A, Thermolysin Inhibition
pdb|3FXP|A Chain A, Thermolysin Inhibition
pdb|3FXS|A Chain A, Metal Exchange In Thermolysin
pdb|2WHZ|A Chain A, Dipeptide Inhibitors Of Thermolysin
pdb|2WI0|A Chain A, Dipeptide Inhibitors Of Thermolysin
pdb|3LS7|A Chain A, Crystal Structure Of Thermolysin In Complex With Xenon
pdb|3MS3|A Chain A, Crystal Structure Of Thermolysin In Complex With Aniline
pdb|3MSA|A Chain A, Crystal Structure Of Thermolysin In Complex With
3-Bromophenol
pdb|3MSF|A Chain A, Crystal Structure Of Thermolysin In Complex With Urea
pdb|3MSN|A Chain A, Crystal Structure Of Thermolysin In Complex With
N-Methylurea
pdb|3N21|A Chain A, Crystal Structure Of Thermolysin In Complex With
S-1,2-Propandiol
pdb|3NN7|A Chain A, Crystal Structure Of Thermolysin In Complex With
2-Bromoacetate
pdb|3SSB|A Chain A, Structure Of Insect Metalloproteinase Inhibitor In Complex
With Thermolysin
pdb|3SSB|B Chain B, Structure Of Insect Metalloproteinase Inhibitor In Complex
With Thermolysin
pdb|3QGO|A Chain A, Structure Of Thermolysin In Complex With L-Phenylalanine
Methylester
pdb|3QH1|A Chain A, Structure Of Thermolysin In Complex With
N-Benzyloxycarbonyl-L- Aspartic Acid
pdb|3QH5|A Chain A, Structure Of Thermolysin In Complex With
N-Carbobenzyloxy-L-Aspartic Acid And L-Phenylalanine
Methyl Ester
pdb|3T73|A Chain A, Thermolysin In Complex With Ubtln22
pdb|3T74|A Chain A, Thermolysin In Complex With Ubtln27
pdb|3T87|A Chain A, Thermolysin In Complex With Ubtln28
pdb|3T8C|A Chain A, Thermolysin In Complex With Ubtln30
pdb|3T8D|A Chain A, Thermolysin In Complex With Ubtln31
pdb|3T8F|A Chain A, Thermolysin In Complex With Ubtln34
pdb|3T8G|A Chain A, Thermolysin In Complex With Ubtln26
pdb|3T8H|A Chain A, Thermolysin In Complex With Ubtln29
pdb|4H57|A Chain A, Thermolysin Inhibition
pdb|4D91|A Chain A, Thermolysin In Complex With Dmso And Acetate
pdb|4D9W|A Chain A, Thermolysin In Complex With Ubtln32
Length = 316
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 50/137 (36%), Gaps = 20/137 (14%)
Query: 409 AELWIATDNSFIKSTSADVLDALREAIATTSYXXXXXXXXXXXXXWAKEFLDVDGDKMKQ 468
LW DN F S A +DA A T Y L DG+
Sbjct: 52 GSLWADADNQFFASYDAPAVDAHYYAGVTYDYYKN-----------VHNRLSYDGNNAAI 100
Query: 469 NCTVEAFNISKNRAGLLLKWNGSE---SDGDNSVHIHWRGSPEIILSMCTHYLDRHGTLQ 525
+V ++ N A WNGS+ DGD I G +++ TH + + T
Sbjct: 101 RSSVH-YSQGYNNA----FWNGSQMVYGDGDGQTFIPLSGGIDVVAHELTHAVTDY-TAG 154
Query: 526 TLDEHKRDAFNNFIRDI 542
+ +++ A N I DI
Sbjct: 155 LIYQNESGAINEAISDI 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,174,118
Number of Sequences: 62578
Number of extensions: 823039
Number of successful extensions: 1877
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1810
Number of HSP's gapped (non-prelim): 59
length of query: 956
length of database: 14,973,337
effective HSP length: 108
effective length of query: 848
effective length of database: 8,214,913
effective search space: 6966246224
effective search space used: 6966246224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)