Query 043518
Match_columns 273
No_of_seqs 202 out of 1014
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:51:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02560 enoyl-CoA reductase 100.0 2.2E-85 4.8E-90 607.2 28.0 267 2-273 39-308 (308)
2 KOG1639 Steroid reductase requ 100.0 1.7E-78 3.7E-83 532.6 17.6 256 2-273 38-297 (297)
3 KOG1638 Steroid reductase [Lip 100.0 1.6E-55 3.5E-60 386.6 19.9 204 53-273 50-256 (257)
4 PLN02392 probable steroid redu 100.0 1.2E-51 2.6E-56 372.0 23.2 210 48-273 41-259 (260)
5 PLN03164 3-oxo-5-alpha-steroid 100.0 4.7E-47 1E-51 348.9 18.6 175 93-273 113-322 (323)
6 PF02544 Steroid_dh: 3-oxo-5-a 100.0 1E-43 2.3E-48 298.3 16.8 146 121-273 1-149 (150)
7 KOG1640 Predicted steroid redu 100.0 1.8E-35 3.8E-40 265.9 15.7 221 43-273 55-303 (304)
8 PF06966 DUF1295: Protein of u 99.8 2E-17 4.4E-22 148.4 16.5 111 154-265 116-234 (235)
9 COG3752 Steroid 5-alpha reduct 99.6 1.7E-15 3.6E-20 134.9 10.2 166 101-273 83-266 (272)
10 KOG4650 Predicted steroid redu 99.1 5.1E-10 1.1E-14 100.0 11.5 69 155-223 173-244 (311)
11 PF01222 ERG4_ERG24: Ergostero 99.0 9.2E-10 2E-14 107.0 7.9 113 159-273 304-431 (432)
12 PF04191 PEMT: Phospholipid me 98.8 7.2E-08 1.6E-12 75.4 11.4 98 158-255 2-104 (106)
13 COG2020 STE14 Putative protein 98.7 2.3E-07 5E-12 80.7 13.1 116 155-273 66-185 (187)
14 KOG1435 Sterol reductase/lamin 98.6 2.3E-08 4.9E-13 95.6 4.1 114 158-273 299-427 (428)
15 cd01801 Tsc13_N Ubiquitin-like 98.3 5.4E-07 1.2E-11 67.3 3.7 40 2-49 38-77 (77)
16 PF04140 ICMT: Isoprenylcystei 97.8 0.00027 5.8E-09 54.9 9.9 80 164-243 3-86 (94)
17 KOG2628 Farnesyl cysteine-carb 97.4 0.00042 9.2E-09 60.3 6.6 82 190-273 118-200 (201)
18 COG1755 Uncharacterized protei 96.7 0.057 1.2E-06 46.0 12.6 92 156-248 68-164 (172)
19 cd01792 ISG15_repeat1 ISG15 ub 96.6 0.0017 3.7E-08 48.5 3.1 41 3-49 38-78 (80)
20 cd01791 Ubl5 UBL5 ubiquitin-li 96.6 0.0017 3.6E-08 48.1 2.9 36 2-45 36-71 (73)
21 cd01804 midnolin_N Ubiquitin-l 95.5 0.012 2.5E-07 43.9 2.8 34 2-46 36-69 (78)
22 cd01805 RAD23_N Ubiquitin-like 94.7 0.025 5.5E-07 41.4 2.6 29 4-40 39-67 (77)
23 cd01812 BAG1_N Ubiquitin-like 93.9 0.049 1.1E-06 39.1 2.5 34 3-46 35-68 (71)
24 PF00240 ubiquitin: Ubiquitin 93.9 0.078 1.7E-06 37.8 3.6 36 3-46 31-66 (69)
25 cd01803 Ubiquitin Ubiquitin. U 93.5 0.073 1.6E-06 38.5 2.9 39 3-49 36-74 (76)
26 cd01806 Nedd8 Nebb8-like ubiq 93.3 0.086 1.9E-06 38.1 3.0 38 3-48 36-73 (76)
27 cd01815 BMSC_UbP_N Ubiquitin-l 93.2 0.068 1.5E-06 39.9 2.4 28 5-40 41-68 (75)
28 cd01810 ISG15_repeat2 ISG15 ub 92.6 0.11 2.3E-06 38.0 2.7 37 3-47 34-70 (74)
29 cd01808 hPLIC_N Ubiquitin-like 92.2 0.1 2.3E-06 37.7 2.1 32 4-45 36-67 (71)
30 cd01809 Scythe_N Ubiquitin-lik 92.0 0.12 2.5E-06 37.0 2.2 33 4-46 37-69 (72)
31 cd01793 Fubi Fubi ubiquitin-li 91.6 0.17 3.7E-06 37.0 2.7 36 4-47 35-70 (74)
32 cd01800 SF3a120_C Ubiquitin-li 91.0 0.19 4.1E-06 37.0 2.5 39 4-50 34-72 (76)
33 PF14560 Ubiquitin_2: Ubiquiti 90.9 0.17 3.6E-06 38.2 2.2 46 4-52 40-86 (87)
34 cd01769 UBL Ubiquitin-like dom 90.7 0.23 5.1E-06 34.7 2.7 35 4-48 34-68 (69)
35 cd01794 DC_UbP_C dendritic cel 90.4 0.22 4.8E-06 36.3 2.4 30 3-40 34-63 (70)
36 cd01813 UBP_N UBP ubiquitin pr 90.2 0.23 5E-06 36.6 2.3 36 3-45 35-70 (74)
37 cd01807 GDX_N ubiquitin-like d 89.7 0.25 5.4E-06 36.0 2.1 30 4-41 37-66 (74)
38 cd01798 parkin_N amino-termina 89.7 0.29 6.3E-06 35.2 2.5 32 4-45 35-66 (70)
39 PTZ00044 ubiquitin; Provisiona 89.7 0.3 6.4E-06 35.6 2.5 39 4-50 37-75 (76)
40 smart00213 UBQ Ubiquitin homol 89.3 0.23 5E-06 34.3 1.7 30 3-40 35-64 (64)
41 cd01802 AN1_N ubiquitin-like d 89.2 0.36 7.9E-06 38.0 2.9 36 4-47 64-99 (103)
42 cd01797 NIRF_N amino-terminal 88.3 0.36 7.8E-06 35.9 2.2 31 4-42 39-69 (78)
43 cd01795 USP48_C USP ubiquitin- 88.2 0.46 1E-05 37.5 2.8 35 4-46 41-76 (107)
44 cd01789 Alp11_N Ubiquitin-like 88.1 0.66 1.4E-05 35.0 3.6 44 4-51 39-83 (84)
45 cd01796 DDI1_N DNA damage indu 85.3 0.69 1.5E-05 33.6 2.3 34 4-47 36-70 (71)
46 PLN02797 phosphatidyl-N-dimeth 83.4 7.5 0.00016 33.0 7.8 65 158-222 65-132 (164)
47 TIGR00601 rad23 UV excision re 81.8 1.1 2.4E-05 43.3 2.7 31 3-41 39-69 (378)
48 cd01763 Sumo Small ubiquitin-r 78.0 2.6 5.6E-05 31.8 3.2 36 4-47 48-83 (87)
49 cd01790 Herp_N Homocysteine-re 72.1 2.7 5.8E-05 31.6 1.9 29 4-40 42-72 (79)
50 cd01799 Hoil1_N Ubiquitin-like 70.6 3.7 8E-05 30.3 2.3 31 4-45 39-71 (75)
51 cd01788 ElonginB Ubiquitin-lik 62.0 4.4 9.6E-05 32.7 1.3 28 4-39 38-65 (119)
52 KOG0010 Ubiquitin-like protein 59.2 6 0.00013 39.3 2.0 37 5-49 52-88 (493)
53 PF08817 YukD: WXG100 protein 56.4 7.7 0.00017 28.6 1.8 25 20-46 54-78 (79)
54 COG4094 Predicted membrane pro 56.4 20 0.00043 31.8 4.5 73 196-272 100-173 (219)
55 PF11976 Rad60-SLD: Ubiquitin- 54.4 10 0.00022 27.0 2.1 27 6-40 40-66 (72)
56 PF07298 NnrU: NnrU protein; 53.0 1.6E+02 0.0034 25.7 13.4 67 199-272 96-164 (191)
57 cd01814 NTGP5 Ubiquitin-like N 44.4 17 0.00036 29.3 2.0 26 3-36 48-73 (113)
58 KOG2922 Uncharacterized conser 40.4 95 0.0021 29.6 6.6 72 168-253 35-116 (335)
59 KOG4142 Phospholipid methyltra 38.1 85 0.0018 27.1 5.4 78 157-235 96-178 (208)
60 KOG4495 RNA polymerase II tran 37.7 13 0.00027 29.3 0.4 30 5-40 39-68 (110)
61 cd01811 OASL_repeat1 2'-5' oli 37.6 33 0.00072 25.7 2.5 32 6-40 38-69 (80)
62 TIGR03813 put_Glu_GABA_T putat 34.7 3.8E+02 0.0082 26.1 10.3 37 161-198 363-399 (474)
63 PF10790 DUF2604: Protein of U 33.2 30 0.00065 25.2 1.7 26 19-46 43-68 (76)
64 PF15584 Imm44: Immunity prote 32.8 21 0.00045 27.8 0.8 21 190-210 21-50 (94)
65 PF11543 UN_NPL4: Nuclear pore 31.5 37 0.00081 25.3 2.1 21 26-48 59-79 (80)
66 KOG0004 Ubiquitin/40S ribosoma 31.0 30 0.00065 29.4 1.6 26 22-47 47-72 (156)
67 PF05653 Mg_trans_NIPA: Magnes 30.3 3.2E+02 0.007 25.4 8.5 48 207-254 46-103 (300)
68 KOG0011 Nucleotide excision re 29.1 41 0.00089 32.0 2.3 36 5-48 40-76 (340)
69 PF09469 Cobl: Cordon-bleu ubi 24.6 38 0.00081 25.5 0.9 26 20-50 21-46 (79)
70 KOG0003 Ubiquitin/60s ribosoma 23.1 14 0.0003 29.6 -1.7 35 21-55 46-80 (128)
71 cd01774 Faf1_like2_UBX Faf1 ik 20.6 68 0.0015 24.2 1.7 22 26-49 64-85 (85)
72 PF13789 DUF4181: Domain of un 20.1 2.5E+02 0.0053 22.0 4.9 24 192-216 14-37 (110)
No 1
>PLN02560 enoyl-CoA reductase
Probab=100.00 E-value=2.2e-85 Score=607.15 Aligned_cols=267 Identities=81% Similarity=1.494 Sum_probs=246.5
Q ss_pred CCCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccCCCCchHHHHHHHHHHHHHHHHHHHhhccccc
Q 043518 2 KFYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLGPQVSYRTLFFFEYLGPLILYPIFYYFPVYQF 81 (273)
Q Consensus 2 ~~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG~qi~~r~~f~~Ey~gPl~i~~~~~~~~~~~y 81 (273)
+++|+|||++++.++++ .+++.|+|+++|+|+|+++|+ +++||||||||||||||++||+||++++++||++++ +|
T Consensus 39 ~~~~~RqRL~~~~~~gk-~~g~~L~d~ktL~d~gv~~gs--tLy~kDLGpQi~wrtVF~~EY~GPl~i~~l~y~~~~-~y 114 (308)
T PLN02560 39 KYYPSRQRLTLPLPPGK-TRPTVLDDSKSLKDYGLGDGG--TVVFKDLGPQVSYRTLFFFEYLGPLLIYPLFYFFPQ-VY 114 (308)
T ss_pred CCChhheEEEEecCCCC-cCccccCCCCCHHhcCCCCCc--eEEEEeCCCcCchhhhHHHHhhhHHHHHHHHHHhhh-hh
Confidence 35789999998644342 467788999999999999999 999999999999999999999999999999999888 88
Q ss_pred cCC--CCCCcCCcHHHHHHHHHHHHHhhhhheehhccccCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHH
Q 043518 82 FGY--KGERVIHPVQTYALYYWCFHYFKRIMETFFVHRFSHATSPISNVFRNCAYYWSFGSFIAYYVNHPLYTPVSDLQM 159 (273)
Q Consensus 82 ~~~--~~~~~~~~~~~l~~~l~~~Hy~kR~~Et~fv~~fS~~~mpl~~~~~~~~~Y~~~~~~i~~~~~~~~y~~~~~~~~ 159 (273)
+.. +.....+..|.++++|+++||+||++||+||||||++|||+.|+++||+|||+++..++++++||.|++..+.+.
T Consensus 115 ~~~~~~~~~~~~~~~~l~~~~~~~Hy~kR~~Et~fvhrfS~~tmpl~n~~~n~~~Yw~~~~~~~y~~~~~~~~~~~~~~~ 194 (308)
T PLN02560 115 KYFGYPARRVIHPVQTYAMYYWCFHYAKRILETFFVHRFSHATSPLFNVFRNCAYYWTFGAYIAYFVNHPLYTPVSETQM 194 (308)
T ss_pred cccccCcCCCCchHHHHHHHHHHHHHHHHhhheeeeEeecCCCccHHHHHHHHHHHHHHHHHHhhhcccCCccccchhHH
Confidence 622 123445688999999999999999999999999999999999999999999999999999999998876667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCC-CCCCcccccCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 043518 160 KIGFAFGIICQIANFYCHILLKNLRSAD-GSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAALIM 238 (273)
Q Consensus 160 ~~G~~lF~ig~~~n~~~h~~L~~LR~~~-g~~~y~iP~gglF~~VscPNYf~Eil~w~gf~l~~~s~~~~lf~~~~~~~m 238 (273)
++|+++|++|+++|++||.+|++|| ++ |+++|+||+||||++|||||||+||++|+||+++++++++++|++++++||
T Consensus 195 ~~g~~lf~~~~~~N~~~h~~L~~LR-~~~g~~~y~IP~g~lF~~VscPnY~~Ei~~W~gf~~~t~~~~~~~F~~~~~~~m 273 (308)
T PLN02560 195 KVGFGFGLVCQLANFYCHIILRNLR-KPDGKGGYQIPRGFLFNYVTCANYTTEIYQWLGFNIATQTVAGYLFLAVAAAIM 273 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCeeCCCCCCcCeecCCcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 76 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Q 043518 239 TNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL 273 (273)
Q Consensus 239 ~~~A~~~h~wY~kkFg~~~~~~~Ypk~RkalIPfi 273 (273)
.+||.+||+||+|||+|+||+++|||+|++++||+
T Consensus 274 ~~wA~~kh~~Y~k~F~d~~~~~~yp~~~~~~pp~~ 308 (308)
T PLN02560 274 TNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL 308 (308)
T ss_pred HHHHHHHHHHHHHhccCccccccCCCceEeCCCcC
Confidence 99999999999999999999999999888888985
No 2
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-78 Score=532.64 Aligned_cols=256 Identities=54% Similarity=1.016 Sum_probs=237.5
Q ss_pred CCCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccCCCCchHHHHHHHHHHHHHHHHHHHhhccccc
Q 043518 2 KFYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLGPQVSYRTLFFFEYLGPLILYPIFYYFPVYQF 81 (273)
Q Consensus 2 ~~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG~qi~~r~~f~~Ey~gPl~i~~~~~~~~~~~y 81 (273)
|.+|.|+|+++..+ ++|++|.++.+|+|+|+.++. +++||||||||+|||||++||+||++++++||+++..+|
T Consensus 38 k~~~~~~r~tlr~e----~kgkpl~~~s~l~e~~~~s~~--~i~vKDLGpQI~wrtvF~~EYlGPLlvy~~Fy~~p~~vy 111 (297)
T KOG1639|consen 38 KITPYRIRLTLRVE----PKGKPLIDNSKLQEYGDGSGA--TIYVKDLGPQISWRTVFFAEYLGPLLVYPLFYYRPTLVY 111 (297)
T ss_pred ccCccchhheeecc----CCCccccchhHHHHhccCCCC--EEEEeccCCccchhhhhHHHhhchHHhHhHHHhchheee
Confidence 56786666655422 568889777789999999998 999999999999999999999999999999999998888
Q ss_pred cCCCCCCcCCcHHHHHHHHHHHHHhhhhheehhccccCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCch--hHH
Q 043518 82 FGYKGERVIHPVQTYALYYWCFHYFKRIMETFFVHRFSHATSPISNVFRNCAYYWSFGSFIAYYVNHPLYTPVSD--LQM 159 (273)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~Hy~kR~~Et~fv~~fS~~~mpl~~~~~~~~~Y~~~~~~i~~~~~~~~y~~~~~--~~~ 159 (273)
+. +...++.|.+++.++++||.||++||+||||||.+|||+.|.++||+|||+++..++|+++||.|+++.. .+.
T Consensus 112 g~---~~~i~~~~~iA~~~~~~Hy~KRl~ET~FvhrFs~atmp~~nlfKnC~~yw~~~~~vaYfvnhp~~t~~~~~~~~~ 188 (297)
T KOG1639|consen 112 GK---DAVIHPLQRIAFFLWLFHYGKRLLETIFVHRFSLATMPIFNLFKNCFYYWGFSALVAYFVNHPLFTPPKLGKLQV 188 (297)
T ss_pred ch---hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHhhHHHHHHHHHHHHHhcCCCCCCcchhhhhh
Confidence 75 4457899999999999999999999999999999999999999999999999999999999999998754 789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccc--cCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 043518 160 KIGFAFGIICQIANFYCHILLKNLRSADGSGGYQIP--RGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAALI 237 (273)
Q Consensus 160 ~~G~~lF~ig~~~n~~~h~~L~~LR~~~g~~~y~iP--~gglF~~VscPNYf~Eil~w~gf~l~~~s~~~~lf~~~~~~~ 237 (273)
++|++.|++|+++|++||..|++|| ++|+|+++|| +|.+|++||||||+.|+..|+||+++++++++++|++.+++|
T Consensus 189 ~~~l~~fv~~el~NF~~HI~LR~lr-p~g~k~r~ip~~~g~lFnlvscpNYt~Ev~sWi~F~i~tq~l~a~lFl~vg~aq 267 (297)
T KOG1639|consen 189 KLGLGGFVLCELGNFSCHILLRNLR-PAGSKKRRIPLPDGFLFNLVSCPNYTYEVGSWIGFAIMTQCLAAYLFLTVGAAQ 267 (297)
T ss_pred hhhhHHHhhhhhcceeeEeehhhcc-CCcCccceeecCCccEEEEEecCCcceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 9999887777 677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Q 043518 238 MTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL 273 (273)
Q Consensus 238 m~~~A~~~h~wY~kkFg~~~~~~~Ypk~RkalIPfi 273 (273)
|..||.+||+.|+|+| +|||++|+.||||+
T Consensus 268 MtiWA~~Kh~~ylKeF------p~Ypr~r~~iiPFv 297 (297)
T KOG1639|consen 268 MTIWAKGKHRRYLKEF------PDYPRRRKIIIPFV 297 (297)
T ss_pred HHHHHHhhhHhHhhhc------ccCCccccccCCCC
Confidence 9999999999999999 79999999999996
No 3
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-55 Score=386.64 Aligned_cols=204 Identities=30% Similarity=0.523 Sum_probs=182.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcCCcHHHHHHHHHHHHHhhhhheehhccccCCCCcchHHHHHHH
Q 043518 53 VSYRTLFFFEYLGPLILYPIFYYFPVYQFFGYKGERVIHPVQTYALYYWCFHYFKRIMETFFVHRFSHATSPISNVFRNC 132 (273)
Q Consensus 53 i~~r~~f~~Ey~gPl~i~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~l~~~Hy~kR~~Et~fv~~fS~~~mpl~~~~~~~ 132 (273)
|+.|.+|++++. |.+..++..+... +....+...++..++++||.+|.++++|+++ |.++||+....+..
T Consensus 50 ip~~~aw~iqe~-Paf~~pl~~~~~~--------~~~~~~~~~~L~~~flvHYf~R~liypf~~~-~~~~~p~~i~a~a~ 119 (257)
T KOG1638|consen 50 IPPRIAWFIQEL-PAFAIPLYSLFRG--------PSSDLPPGLLLLSAFLVHYFHRALIYPFLIR-SSNPSPAIIVALAI 119 (257)
T ss_pred CCchhHHHHhcC-cHHHhhHHHhcCC--------CcccccccHHHHHHHHHHHHHHHHhheeeec-CCCCccHHHHHHHH
Confidence 999999999886 9998887654321 1111144567889999999999999999999 55899999999999
Q ss_pred HHHHHHHHHHHHHhcCC-CCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccccCCccccccccchh
Q 043518 133 AYYWSFGSFIAYYVNHP-LYTPV--SDLQMKIGFAFGIICQIANFYCHILLKNLRSADGSGGYQIPRGFLFNIVTCANYT 209 (273)
Q Consensus 133 ~~Y~~~~~~i~~~~~~~-~y~~~--~~~~~~~G~~lF~ig~~~n~~~h~~L~~LR~~~g~~~y~iP~gglF~~VscPNYf 209 (273)
.|+..||.+++.++.+- .++++ .+++..+|+.+|++|+++|++||.+|++|| |+|+++||||+||||+||||||||
T Consensus 120 ~F~~~NG~lqg~y~~~~~~~~d~~~~~~r~liG~~lfv~Gm~iN~~sD~iL~~LR-k~~~~~YkIP~GglFeyVsCPNYf 198 (257)
T KOG1638|consen 120 AFCTLNGTLQGLYLSHYQLYEDPWVTDIRFLIGVVLFVTGMLINIYSDNILRTLR-KPGGKGYKIPRGGLFEYVSCPNYF 198 (257)
T ss_pred HHHHhhHHHHHHHHHhcccccCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHhh-cCCCCceecCCCceEEEeecchHH
Confidence 99999999999888763 33433 456999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Q 043518 210 TEIYQWLGFNIATQTVAGYIFLVVAALIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL 273 (273)
Q Consensus 210 ~Eil~w~gf~l~~~s~~~~lf~~~~~~~m~~~A~~~h~wY~kkFg~~~~~~~Ypk~RkalIPfi 273 (273)
|||++|+|+++++|+++++.|++++++||.+||.++|+||+||| +||||+|||+||||
T Consensus 199 gEiieW~Gyal~~ws~p~~aFa~ft~~~l~pRA~ahH~WY~~kF------e~YPk~RkAlIPfv 256 (257)
T KOG1638|consen 199 GEIIEWIGYALASWSLPALAFAFFTICNLGPRAYAHHKWYLKKF------EDYPKNRKALIPFV 256 (257)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhh------ccCCccceeecccc
Confidence 99999999999999999999999999999999999999999999 79999999999997
No 4
>PLN02392 probable steroid reductase DET2
Probab=100.00 E-value=1.2e-51 Score=371.96 Aligned_cols=210 Identities=25% Similarity=0.411 Sum_probs=182.4
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcCCcHHHHHHHHHHHHHhhhhheehhccccC-----CCC
Q 043518 48 DLGPQVSYRTLFFFEYLGPLILYPIFYYFPVYQFFGYKGERVIHPVQTYALYYWCFHYFKRIMETFFVHRFS-----HAT 122 (273)
Q Consensus 48 dlG~qi~~r~~f~~Ey~gPl~i~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~l~~~Hy~kR~~Et~fv~~fS-----~~~ 122 (273)
++|+.++.|.+|++++. |.++.++..+.. ++....+.+.++++++++||++|.+++++..+-| +++
T Consensus 41 ~~g~~vp~rlaW~lmE~-P~~~~~~~~~~~--------~~~~~~~~~~vl~~lf~~HY~~Ra~i~Pl~~~~~~~~~~~~p 111 (260)
T PLN02392 41 GWGPTVSPPLAWFLMES-PTLWLTLLLFPL--------GQHFTNPKALLLMSPYLLHYFHRTCIYPLRLYRSTSQQNTKG 111 (260)
T ss_pred CCCcCCCchHHHHHhhc-cHHHHHHHHHhc--------CccccccHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCC
Confidence 57999999999999665 888776543321 1122345577888999999999999999987644 238
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhcC--CCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccccCC
Q 043518 123 SPISNVFRNCAYYWSFGSFIAYYVNH--PLYTPV--SDLQMKIGFAFGIICQIANFYCHILLKNLRSADGSGGYQIPRGF 198 (273)
Q Consensus 123 mpl~~~~~~~~~Y~~~~~~i~~~~~~--~~y~~~--~~~~~~~G~~lF~ig~~~n~~~h~~L~~LR~~~g~~~y~iP~gg 198 (273)
||+...+++..|++.||.+++.++.+ +.|++. ..++.++|+++|++|+.+|++||.+|++|| ++| ++|+||+||
T Consensus 112 ~p~~i~~~a~~F~~~Ng~lq~~wl~~~~~~y~~~~~~~~~~~iG~~lF~~g~~~N~~sh~~L~~LR-k~g-~~Y~iP~GG 189 (260)
T PLN02392 112 FPVSMALLAFGFNLLNAYLQARWVSHYKDDYEDGGWFWWRFFGGLVVFLWGMRINVWSDRVLVGLK-REG-GGYKVPRGG 189 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCC-CeeECCCCC
Confidence 99999999999999999999988765 445432 245789999999999999999999999999 777 689999999
Q ss_pred ccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Q 043518 199 LFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAALIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL 273 (273)
Q Consensus 199 lF~~VscPNYf~Eil~w~gf~l~~~s~~~~lf~~~~~~~m~~~A~~~h~wY~kkFg~~~~~~~Ypk~RkalIPfi 273 (273)
+|+||||||||+||++|+||+++++++++++|++++++||.+||.++|+||+|||| +||||+|||+||||
T Consensus 190 lF~~VscPnYf~EileW~gfal~t~s~~~~~F~~~~~~nl~~rA~~~hkwY~~kFg-----~~ypk~RkaiIPfi 259 (260)
T PLN02392 190 WFELVSCPNYFGEIVEWLGWAVMTWSWAGFGFFLYTCSNLVPRACANHKWYLEKFG-----EDYPKGRKAVIPFL 259 (260)
T ss_pred CcCeEcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----ccccCCCeEecCcc
Confidence 99999999999999999999999999999999999999999999999999999998 48999999999997
No 5
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional
Probab=100.00 E-value=4.7e-47 Score=348.87 Aligned_cols=175 Identities=24% Similarity=0.383 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHHhhhhheehhccccCC-CCcchHHHHHHHHHHHHHHHHHHHH-----------------hcCCC-CCC
Q 043518 93 VQTYALYYWCFHYFKRIMETFFVHRFSH-ATSPISNVFRNCAYYWSFGSFIAYY-----------------VNHPL-YTP 153 (273)
Q Consensus 93 ~~~l~~~l~~~Hy~kR~~Et~fv~~fS~-~~mpl~~~~~~~~~Y~~~~~~i~~~-----------------~~~~~-y~~ 153 (273)
...++++|+.+|.+||++||+||++||+ ++|++.+++.|++||++.++.+..- +.+.. ..+
T Consensus 113 ~~~~~l~L~~lq~lRRLyEslfVskfS~~SrMhl~hYlvGl~fY~~~~lsl~~~~~~~~~~~~~~~~~~~~v~g~~~~~~ 192 (323)
T PLN03164 113 RSVFLLLLMEIHVLRRLYESLYVFKYSPSARMHILGYLTGLFFYVAAPLSLCCNCAPEVAKFVGNQVAEFIVKGKSAMSA 192 (323)
T ss_pred HHHHHHHHHHHHHHHHHHheeeEEecCCcceeeHHHHHHHHHHHHHHHHHHHhccchhhhhhhcccchhhcccccccccc
Confidence 4567889999999999999999999985 7999999999999999987655211 11110 000
Q ss_pred ---C----------chhHHHHHHHHHHHHHHHHHHHHHHHhhccc-CCCCCCcccccCCccccccccchhHHHHHHHHHH
Q 043518 154 ---V----------SDLQMKIGFAFGIICQIANFYCHILLKNLRS-ADGSGGYQIPRGFLFNIVTCANYTTEIYQWLGFN 219 (273)
Q Consensus 154 ---~----------~~~~~~~G~~lF~ig~~~n~~~h~~L~~LR~-~~g~~~y~iP~gglF~~VscPNYf~Eil~w~gf~ 219 (273)
. ..+..++|+++|++|++.|+.||.+|++||+ ++|+++|+||+||||++|||||||+||++|+|++
T Consensus 193 ~~~~~~~~~~~~~~l~~~q~iGl~lFlig~~~n~~~H~iLa~LR~~k~~~~~Y~IP~GglF~~VSCPHYf~EIliw~gfa 272 (323)
T PLN03164 193 IEFDWWDFVSPLMKLGWFQWIGAAIFLWGWIHQYRCHAILGSLREHKKQADEYVIPYGDWFEMVSCPHYLAEIVIYAGLL 272 (323)
T ss_pred cccchHhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCceEECCCCCCcCeEcCCcHHHHHHHHHHHH
Confidence 0 1234689999999999999999999999994 3467889999999999999999999999999999
Q ss_pred HHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Q 043518 220 IATQ--TVAGYIFLVVAALIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL 273 (273)
Q Consensus 220 l~~~--s~~~~lf~~~~~~~m~~~A~~~h~wY~kkFg~~~~~~~Ypk~RkalIPfi 273 (273)
++++ +...+++++++++||.+||.++|+||+||| +||||+|||+||||
T Consensus 273 l~t~~~~~~~~l~~~~v~~nL~~~A~~tHkWY~kkF------~dYPk~RkAIIPfI 322 (323)
T PLN03164 273 IASGGTDLTIWLLFGFVVANLTFAAAETHRWYLQKF------ENYPRNRYAIIPFV 322 (323)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cccccCceEecCcc
Confidence 9987 566788899999999999999999999999 68999999999997
No 6
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1.3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane
Probab=100.00 E-value=1e-43 Score=298.33 Aligned_cols=146 Identities=39% Similarity=0.722 Sum_probs=133.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhcC-CCCCC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccccC
Q 043518 121 ATSPISNVFRNCAYYWSFGSFIAYYVNH-PLYTP--VSDLQMKIGFAFGIICQIANFYCHILLKNLRSADGSGGYQIPRG 197 (273)
Q Consensus 121 ~~mpl~~~~~~~~~Y~~~~~~i~~~~~~-~~y~~--~~~~~~~~G~~lF~ig~~~n~~~h~~L~~LR~~~g~~~y~iP~g 197 (273)
.|||++++++||.|++++|.+++.++.. ..+.. ..+++.++|+++|++|+..|+++|.+|++|| ++|+++|+||+|
T Consensus 1 ~~mpi~~~~~~~~f~~~ng~l~~~~~~~~~~~~~~~~~~~~~~~g~~lf~~g~~~n~~~h~~L~~lr-~~~~~~y~iP~g 79 (150)
T PF02544_consen 1 NTMPISNVFMNCFFWVLNGYLIGYYLSYYAPYQYTWLPSPRFIIGLALFLIGSIGNFYSHLILANLR-KPGSKKYKIPKG 79 (150)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccCCceeCCCC
Confidence 4899999999999888888888866654 22221 2357899999999999999999999999999 889999999999
Q ss_pred CccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Q 043518 198 FLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAALIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL 273 (273)
Q Consensus 198 glF~~VscPNYf~Eil~w~gf~l~~~s~~~~lf~~~~~~~m~~~A~~~h~wY~kkFg~~~~~~~Ypk~RkalIPfi 273 (273)
|+|++||||||++||++|+||+++++++++++|++++++||.+||.++|+||+||| +|||++||++||||
T Consensus 80 g~F~~vscP~Y~~Eil~w~~f~l~~~~~~~~~f~~~~~~~l~~~A~~~h~wY~~~F------~~yp~~R~~lIPfi 149 (150)
T PF02544_consen 80 GLFEYVSCPHYFFEILIWIGFALLTGSWPSYAFALFVVVNLSPRAVQTHRWYKKKF------KEYPKNRKALIPFI 149 (150)
T ss_pred CCcceeeehhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHC------ccccCCCeEecCcc
Confidence 99999999999999999999999999999999999999999999999999999999 68999999999997
No 7
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-35 Score=265.93 Aligned_cols=221 Identities=23% Similarity=0.394 Sum_probs=171.0
Q ss_pred EEEEcccCCCCchHHHHHHHH--HHHHHHHHHHHhhccccccCC-----------------CC---CCcCCcHHHHHHHH
Q 043518 43 TVVFKDLGPQVSYRTLFFFEY--LGPLILYPIFYYFPVYQFFGY-----------------KG---ERVIHPVQTYALYY 100 (273)
Q Consensus 43 ~~~~kdlG~qi~~r~~f~~Ey--~gPl~i~~~~~~~~~~~y~~~-----------------~~---~~~~~~~~~l~~~l 100 (273)
.+.++.+-++..|-..|.+-- ..|++++.+ .+..+... .. ....+.+..+++.+
T Consensus 55 p~~~~kf~VPK~wF~HFY~i~vlw~~l~l~~~----~~~~~~~~~~~~~h~fl~~~~~~~~~~~e~~~~~~~~~~~~~l~ 130 (304)
T KOG1640|consen 55 PLLVTKFTVPKRWFSHFYAIGVLWNPLLLYFL----LSTNFPIAMPSVEHRFLVILGVFIFKNIEEDLMYSLTLQVLLLI 130 (304)
T ss_pred HHHhHhhcCcHHHHHHHHHHHHHHHHHHHHHH----HHhhcCcCchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Confidence 467778888888988887732 234444322 22212110 00 00112234456678
Q ss_pred HHHHHhhhhheehhccccC-CCCcchHHHHHHHHHHHHHHHHHHHHhcC----CCCCCCchhHHHHHHHHHHHHHHHHHH
Q 043518 101 WCFHYFKRIMETFFVHRFS-HATSPISNVFRNCAYYWSFGSFIAYYVNH----PLYTPVSDLQMKIGFAFGIICQIANFY 175 (273)
Q Consensus 101 ~~~Hy~kR~~Et~fv~~fS-~~~mpl~~~~~~~~~Y~~~~~~i~~~~~~----~~y~~~~~~~~~~G~~lF~ig~~~n~~ 175 (273)
+..|..||++||+|+..+| +++|.++|++.+.++|.+....+-.-.++ |.....+++..++|.++|++|.+.|..
T Consensus 131 ~s~~~~rrlYet~fv~~~~~~s~mnl~hy~vg~V~y~vl~~~l~~~~~g~~~~~~~~~l~~i~q~~g~~iF~i~s~~Qy~ 210 (304)
T KOG1640|consen 131 YSLHTLRRLYETLFVLVYSVNSKMNLGHYLVGYVFYTVLSLALLLCTNGSSEGPNFNSLSSILQWLGLGIFAIGSIHQYA 210 (304)
T ss_pred HHHHHHHHHHHHHHheeeeeccccchhhHHHHHHHHHHHHHHHHHhhcccccCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998 79999999999999998764332211111 111112355899999999999999999
Q ss_pred HHHHHhhcccCCC-CCCcccccCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043518 176 CHILLKNLRSADG-SGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAALIMTNWALAKHRRLKKLFD 254 (273)
Q Consensus 176 ~h~~L~~LR~~~g-~~~y~iP~gglF~~VscPNYf~Eil~w~gf~l~~~s~~~~lf~~~~~~~m~~~A~~~h~wY~kkFg 254 (273)
||.+|.|+|+.+. .++|.||+||+|++||||||++||++|+|.+....++..|+.+.|+++|++..|..+|+||++||
T Consensus 211 ~h~iL~nlrk~~~~~~~~~ip~g~~F~~Vs~Ph~L~Ei~iY~~ia~~~~~~~iwLv~~~V~~N~t~aA~~Th~wY~~kF- 289 (304)
T KOG1640|consen 211 SHEILGNLRKYPRQAKAYLIPKGGWFKLVSCPHYLAEIIIYVGIALGAPDLTIWLVFGWVAANLTYAALETHRWYLKKF- 289 (304)
T ss_pred HHHHHHHHhhhhhhhhheecCCCCEeeecCChHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 9999999994332 46799999999999999999999999999888888999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccccccCC
Q 043518 255 GKDGRPKYPRRWVILPPFL 273 (273)
Q Consensus 255 ~~~~~~~Ypk~RkalIPfi 273 (273)
++||++|+|||||+
T Consensus 290 -----~~yp~~R~AiiPfl 303 (304)
T KOG1640|consen 290 -----ENYPKNRHAIIPFL 303 (304)
T ss_pred -----ccCccccccccccc
Confidence 89999999999996
No 8
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=99.76 E-value=2e-17 Score=148.43 Aligned_cols=111 Identities=16% Similarity=0.233 Sum_probs=83.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccccCCccccccccchhHHHHHHHHHHHHhhhHH-H---HH
Q 043518 154 VSDLQMKIGFAFGIICQIANFYCHILLKNLRSADGSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVA-G---YI 229 (273)
Q Consensus 154 ~~~~~~~~G~~lF~ig~~~n~~~h~~L~~LR~~~g~~~y~iP~gglF~~VscPNYf~Eil~w~gf~l~~~s~~-~---~l 229 (273)
..+..+++|+++|++|+.+|..+|.|+.++|+++.|+ .++++.|+|+|++|||||||++.|+|+++++.+.. . +.
T Consensus 116 ~~~~~~~~g~~l~~~g~~~E~~AD~Q~~~fk~~~~n~-g~~~~~GLw~~sRHPNYfGE~l~W~g~~~~a~~~~~~~~~~~ 194 (235)
T PF06966_consen 116 PLNWLDILGIALFLIGFLLETVADQQKYRFKKDPANK-GKFCTTGLWRYSRHPNYFGEILFWWGIYLAAISSGSGWLWWA 194 (235)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccC-CccccCCeeeeeeCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3467889999999999999999999999999666655 56999999999999999999999999999875331 1 11
Q ss_pred HH--HH-HHHHHHHH-HHHHHHHHHHhcCCCCCCCCCCCc
Q 043518 230 FL--VV-AALIMTNW-ALAKHRRLKKLFDGKDGRPKYPRR 265 (273)
Q Consensus 230 f~--~~-~~~~m~~~-A~~~h~wY~kkFg~~~~~~~Ypk~ 265 (273)
.+ ++ .+.-+... +-..++...+|+||+++|++|.++
T Consensus 195 ~~~pl~~~~~l~~~sgip~~E~~~~~kyg~~~~Y~~Y~~~ 234 (235)
T PF06966_consen 195 IIGPLFMTLLLLFVSGIPLLEKRMAKKYGDRPAYQEYQRR 234 (235)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHhcCCCHhHHHHHhc
Confidence 10 11 11111122 334666778899999888888764
No 9
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=99.62 E-value=1.7e-15 Score=134.88 Aligned_cols=166 Identities=15% Similarity=0.155 Sum_probs=103.8
Q ss_pred HHHHHhhhhheeh----h---ccccCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCchhHHHHHHHHHHHHHH
Q 043518 101 WCFHYFKRIMETF----F---VHRFSHATSPISNVFRNCAYYWSFGSFIAYYVNHPLY--TPVSDLQMKIGFAFGIICQI 171 (273)
Q Consensus 101 ~~~Hy~kR~~Et~----f---v~~fS~~~mpl~~~~~~~~~Y~~~~~~i~~~~~~~~y--~~~~~~~~~~G~~lF~ig~~ 171 (273)
+..|+.+|..--. + ..+..+..-|+.+++.....-.+..++++.-+.+... .....+.+++|+++|++|+.
T Consensus 83 L~~hl~rR~~~~geD~RY~~l~~~wg~t~~~~~~l~~vf~lQ~ll~~ilalpi~~a~~~~~~~~~~~d~~g~~iwivg~~ 162 (272)
T COG3752 83 LGWHLYRRTRGKGEDPRYVNLRQRWGKTIYPLKALFIVFGLQALLLFILALPIYLAALNGPREFGWWDVIGLAIWIVGIV 162 (272)
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHH
Confidence 3578888865322 1 2222333344555544333322222333322221111 11346788999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCcccccCCccccccccchhHHHHHHHHHHHHhhh--HHHH-----HH--HHHHHHHHHHHH
Q 043518 172 ANFYCHILLKNLRSADGSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQT--VAGY-----IF--LVVAALIMTNWA 242 (273)
Q Consensus 172 ~n~~~h~~L~~LR~~~g~~~y~iP~gglF~~VscPNYf~Eil~w~gf~l~~~s--~~~~-----lf--~~~~~~~m~~~A 242 (273)
.+...|.||..+|+.|.+| +|+.+.|||+|.+|||||+|.+.|+|+.+++-+ ...| +. .+.+.++=+++-
T Consensus 163 fE~lgD~QL~~Fk~~P~nk-gkll~~GLWr~tRHPNYFgE~l~Wwg~~Lia~~~~~~~W~~~sPllmt~LL~~vSGvp~l 241 (272)
T COG3752 163 FEALGDAQLWVFKKDPRNK-GKLLDTGLWRWTRHPNYFGEALVWWGFYLIAISEWLLLWAVASPLLMTWLLVHVSGVPPL 241 (272)
T ss_pred HHHhhHHHHHHHHhChhhc-cccccccceecccCcchHHHHHHHHHHHHHHHhhhhHhhhcccHHHHHHHHHHhcCCChH
Confidence 9999999999999777666 699999999999999999999999999987632 1112 11 122222223322
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCcccccccCC
Q 043518 243 LAKHRRLKKLFDGKDGRPKYPRRWVILPPFL 273 (273)
Q Consensus 243 ~~~h~wY~kkFg~~~~~~~Ypk~RkalIPfi 273 (273)
.++-|++| .+|++|-++..++.|++
T Consensus 242 --~ekm~k~r----~~fr~Yq~rt~~F~P~~ 266 (272)
T COG3752 242 --EEKMLKSR----PGFREYQRRTNAFFPRP 266 (272)
T ss_pred --HHHHhccc----HhHHHHHHHhcccCCCC
Confidence 23333332 33478999999999985
No 10
>KOG4650 consensus Predicted steroid reductase [General function prediction only]
Probab=99.13 E-value=5.1e-10 Score=99.99 Aligned_cols=69 Identities=13% Similarity=0.073 Sum_probs=60.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcc---cCCCCCCcccccCCccccccccchhHHHHHHHHHHHHhh
Q 043518 155 SDLQMKIGFAFGIICQIANFYCHILLKNLR---SADGSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQ 223 (273)
Q Consensus 155 ~~~~~~~G~~lF~ig~~~n~~~h~~L~~LR---~~~g~~~y~iP~gglF~~VscPNYf~Eil~w~gf~l~~~ 223 (273)
..+.+.+|..+|+.|+.++..+|.|+-+++ .++.+++..-+..|+|+|++||||++|-+.|+|+.+.++
T Consensus 173 f~~wD~I~~~m~~~gfvie~~ADqQ~~~f~~~~~~l~~~Gk~~~d~GlwrySRHPNylgEqL~Wwglyvfa~ 244 (311)
T KOG4650|consen 173 FGPWDVIGWTMWVFGFVIEALADQQKLSFKEARYDLENLGKGWCDVGLWRYSRHPNYLGEQLLWWGLYVFAA 244 (311)
T ss_pred cChHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhcCHHHcCCccccccceeeccCccHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999988 334455555889999999999999999999999999875
No 11
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis. They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane
Probab=98.99 E-value=9.2e-10 Score=106.98 Aligned_cols=113 Identities=14% Similarity=0.190 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCC------------CCcccccCCccccccccchhHHHHHHHHHHHHhh--h
Q 043518 159 MKIGFAFGIICQIANFYCHILLKNLRSADGS------------GGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQ--T 224 (273)
Q Consensus 159 ~~~G~~lF~ig~~~n~~~h~~L~~LR~~~g~------------~~y~iP~gglF~~VscPNYf~Eil~w~gf~l~~~--s 224 (273)
...-++++++|.+++-.++.|..++|+.|.+ ++-+.=..|+|.+++||||++|+++=+++++.++ +
T Consensus 304 ~~~i~~l~~~gy~i~r~sn~QK~~FR~~p~~p~~~~~~~~~t~~G~~LL~SGwWg~~Rh~NY~gdil~a~aw~l~~gf~~ 383 (432)
T PF01222_consen 304 AAAILALGLVGYYIFRGSNSQKNRFRRNPKDPKVIHLKYIPTKRGSKLLVSGWWGIARHPNYLGDILMALAWCLPCGFSS 383 (432)
T ss_pred HHHHHHHHHHHHHHHHHhchhHHHhcCCCCCCcccccceeecCCCCeEEEcChhHhhcccchHHHHHHHHHHHHHHhcCc
Confidence 4555678899999999999999999954421 2233445799999999999999999999998774 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccc-ccccCC
Q 043518 225 VAGYIFLVVAALIMTNWALAKHRRLKKLFDGKDGRPKYPRRWV-ILPPFL 273 (273)
Q Consensus 225 ~~~~lf~~~~~~~m~~~A~~~h~wY~kkFg~~~~~~~Ypk~Rk-alIPfi 273 (273)
...+...++.+.-+..||.+.+++-++|||+.| ++|-++.+ .+||+|
T Consensus 384 ~~pyfy~~~~~~lL~hR~~RD~~rC~~KYG~~W--~~Yc~~Vpy~~iP~i 431 (432)
T PF01222_consen 384 ILPYFYPIFFTILLIHRARRDEERCRKKYGKDW--DEYCKRVPYRIIPGI 431 (432)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHhhCHHH--HHHHHhCCEEEeCCc
Confidence 667778888888899999999999999999988 78877555 899986
No 12
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=98.81 E-value=7.2e-08 Score=75.42 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCC----CCCcccccCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHH
Q 043518 158 QMKIGFAFGIICQIANFYCHILLKNLRSADG----SGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVV 233 (273)
Q Consensus 158 ~~~~G~~lF~ig~~~n~~~h~~L~~LR~~~g----~~~y~iP~gglF~~VscPNYf~Eil~w~gf~l~~~s~~~~lf~~~ 233 (273)
+.++|++++++|......+...++.-+...+ ++..++-++|.|++|+||=|++.++.++|.+++.+|+...+.++.
T Consensus 2 ~~~~G~~l~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l~~~s~~~l~~~~~ 81 (106)
T PF04191_consen 2 RFVLGLLLILAGIALAIWAFKALGRFGTYYGDFFGREPQRLVTTGPYRYVRHPMYLGFLLILLGIALMLGSWLGLLLAVL 81 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCeecCCcccccCCcccccCCccCcCChHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 5678999999999999999998887773322 223456799999999999999999999999999988876555544
Q ss_pred HHHHHHHHHH-HHHHHHHHhcCC
Q 043518 234 AALIMTNWAL-AKHRRLKKLFDG 255 (273)
Q Consensus 234 ~~~~m~~~A~-~~h~wY~kkFg~ 255 (273)
...-+...+. .-+++.+++|||
T Consensus 82 ~~~~~~~~~~~~EE~~L~~~fG~ 104 (106)
T PF04191_consen 82 AFLLYYIFIIRFEERFLERRFGE 104 (106)
T ss_pred HHHHHHHHHHHhHHHHHHHHhCc
Confidence 4444444444 566777889995
No 13
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.3e-07 Score=80.69 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=90.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---CCCCcccccCCccccccccchhHHHHHHHHHHHHhhhHHHHHHH
Q 043518 155 SDLQMKIGFAFGIICQIANFYCHILLKNLRSAD---GSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFL 231 (273)
Q Consensus 155 ~~~~~~~G~~lF~ig~~~n~~~h~~L~~LR~~~---g~~~y~iP~gglF~~VscPNYf~Eil~w~gf~l~~~s~~~~lf~ 231 (273)
..+...+|+.++.+|.+.-..++.++.+=. .+ ..+++++=++|.|++|+||=|++.++.++|..+...|+.+.+.+
T Consensus 66 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~LVttG~Y~~VRHP~Y~~~~l~~~g~~~~~~~~~~l~~~ 144 (187)
T COG2020 66 PSWIVGLGLLLVGLGLALRLWAMRTLGRSW-TVSVKARKGHELVTTGPYSIVRHPIYLGLLLFALGTGLLLGSLWALLIF 144 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CcccCCCCCCeeEecCCcceecCcHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456778888888888888888877776522 22 23467788999999999999999999999999888887776666
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Q 043518 232 VVAALIM-TNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL 273 (273)
Q Consensus 232 ~~~~~~m-~~~A~~~h~wY~kkFg~~~~~~~Ypk~RkalIPfi 273 (273)
......+ ..++..-++..+++|||+. +||.++.+.+||.+
T Consensus 145 ~~~~~~~~~~~i~~EEr~L~~~fg~~Y--~~Y~~rV~r~iP~~ 185 (187)
T COG2020 145 VVLVALLFLFRIREEERYLRAEFGDEY--REYRKRVPRLIPPL 185 (187)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhhHHH--HHHHHhCCccCCCC
Confidence 5555555 6677777777778999754 78999999999964
No 14
>KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=98.63 E-value=2.3e-08 Score=95.61 Aligned_cols=114 Identities=11% Similarity=0.153 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC------------CCcccccCCccccccccchhHHHHHHHHHHHHhh--
Q 043518 158 QMKIGFAFGIICQIANFYCHILLKNLRSADGS------------GGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQ-- 223 (273)
Q Consensus 158 ~~~~G~~lF~ig~~~n~~~h~~L~~LR~~~g~------------~~y~iP~gglF~~VscPNYf~Eil~w~gf~l~~~-- 223 (273)
....-+++.+.|..+.-.|+.|...+|+++|+ +|-+.-..|+|.+++||||++|+++=+++++.++
T Consensus 299 ~a~~i~~l~l~gyyifr~an~QK~~FRkn~~~~~~~~i~~i~t~~Gs~LL~SGwWG~aRh~nY~gD~i~alawslp~gf~ 378 (428)
T KOG1435|consen 299 MAVGILVLLLLGYYIFRGANAQKNEFRKNPGDPKLKNIKTIYTSTGSKLLVSGWWGVARHPNYLGDLIMALAWSLPCGFN 378 (428)
T ss_pred HHHHHHHHHHhheeEeeccchhHHHHhcCCCCCccccccceEeccCCeEEeechhhhhcCcCcHHHHHHHHHHHHhccCC
Confidence 34455678889999999999999999976553 2334446799999999999999999999998774
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC-cccccccCC
Q 043518 224 TVAGYIFLVVAALIMTNWALAKHRRLKKLFDGKDGRPKYPR-RWVILPPFL 273 (273)
Q Consensus 224 s~~~~lf~~~~~~~m~~~A~~~h~wY~kkFg~~~~~~~Ypk-~RkalIPfi 273 (273)
+.-.+.+.++.+.-+..||.+.+.+-+.|||+.+ ++|=+ -+.++||+|
T Consensus 379 s~lpyfy~iyf~~LLvhR~~RDe~rC~~KYG~~W--~~Yc~~VpyriiP~V 427 (428)
T KOG1435|consen 379 SPLPYFYPIYFTLLLVHRAARDEHRCRSKYGEDW--EEYCRKVPYRILPYV 427 (428)
T ss_pred CCcchHHHHHHHHHHHHHHhhhHHHHHHHHhhhH--HHHHhhCCcccCCCC
Confidence 6666777788888889999988888899999877 66755 444899986
No 15
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.32 E-value=5.4e-07 Score=67.26 Aligned_cols=40 Identities=25% Similarity=0.401 Sum_probs=35.7
Q ss_pred CCCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEccc
Q 043518 2 KFYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDL 49 (273)
Q Consensus 2 ~~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdl 49 (273)
.++++|||+++. .+|+.|+++++|+++|+++|+ +++||||
T Consensus 38 ~~~~~Rqrl~~~------~~g~~L~d~~tL~~~gv~~g~--~lyvKDL 77 (77)
T cd01801 38 QLTVNRQSLRLE------PKGKSLKDDDTLVDLGVGAGA--TLYVRDL 77 (77)
T ss_pred CCCcceeEEEeC------CCCcccCCcccHhhcCCCCCC--EEEEeeC
Confidence 357899999987 677899999999999999998 9999997
No 16
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2.1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.
Probab=97.80 E-value=0.00027 Score=54.92 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccC--CCCCCcccccCCccccccccchhHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHH
Q 043518 164 AFGIICQIANFYCHILLKNLRSA--DGSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTV--AGYIFLVVAALIMT 239 (273)
Q Consensus 164 ~lF~ig~~~n~~~h~~L~~LR~~--~g~~~y~iP~gglF~~VscPNYf~Eil~w~gf~l~~~s~--~~~lf~~~~~~~m~ 239 (273)
+++++|...-..+...|-+-=.- .-.+++++=+.|.|++|+||||++-++..+|...+..+. .+.++.+.....+.
T Consensus 3 ~~~i~g~~lr~~a~~~LG~~ft~~v~~~~~h~lVt~GpY~~vRHP~Y~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~ 82 (94)
T PF04140_consen 3 GLFIAGQLLRYWAIRTLGRYFTHRVIIQPGHKLVTSGPYRYVRHPSYLGNIIWELGGQLLLFNAWLTALILFALVAWLLF 82 (94)
T ss_dssp --HHHHHHHHHHHHHHHGGG--SS--EETT-----SSTTTTBSSHHHHH-HHHHHHHHHHHHT-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccCcEEEEecCCCEEecccccccccCchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45667777777777666432210 001245677999999999999999888888877665544 34444443444444
Q ss_pred HHHH
Q 043518 240 NWAL 243 (273)
Q Consensus 240 ~~A~ 243 (273)
.|..
T Consensus 83 ~RI~ 86 (94)
T PF04140_consen 83 VRIR 86 (94)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 17
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00042 Score=60.29 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=60.6
Q ss_pred CCcccccCCccccccccchhHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 043518 190 GGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVA-GYIFLVVAALIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVI 268 (273)
Q Consensus 190 ~~y~iP~gglF~~VscPNYf~Eil~w~gf~l~~~s~~-~~lf~~~~~~~m~~~A~~~h~wY~kkFg~~~~~~~Ypk~Rka 268 (273)
.++++=+.|.+.|++||-|.+=++.|+|-.++..+.. ..+|++++.-....|+..-++-..+-|||+. .||.|+...
T Consensus 118 ~~h~lv~~GvY~y~RHPsY~g~flw~~gtq~~L~npis~v~f~~V~w~ff~~Ri~~EE~~Li~fFg~~Y--~eY~kkV~s 195 (201)
T KOG2628|consen 118 SDHKLVTSGVYAYVRHPSYVGFFLWAAGTQTMLCNPISLVAFLLVVWRFFADRIKEEEKYLISFFGSSY--VEYAKKVPS 195 (201)
T ss_pred cCceeEeccchhheeCchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHH--HHHHHhCCc
Confidence 3577889999999999999999999999988765544 4444555555557777766666667788643 677776665
Q ss_pred cccCC
Q 043518 269 LPPFL 273 (273)
Q Consensus 269 lIPfi 273 (273)
=|||+
T Consensus 196 GiPfi 200 (201)
T KOG2628|consen 196 GIPFI 200 (201)
T ss_pred CCCCC
Confidence 68886
No 18
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.66 E-value=0.057 Score=46.04 Aligned_cols=92 Identities=21% Similarity=0.249 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC---CCCcccccCCccccccccchhH-HHHHHHHHHHHhhhH-HHHHH
Q 043518 156 DLQMKIGFAFGIICQIANFYCHILLKNLRSADG---SGGYQIPRGFLFNIVTCANYTT-EIYQWLGFNIATQTV-AGYIF 230 (273)
Q Consensus 156 ~~~~~~G~~lF~ig~~~n~~~h~~L~~LR~~~g---~~~y~iP~gglF~~VscPNYf~-Eil~w~gf~l~~~s~-~~~lf 230 (273)
++..++|+++++.++..-+.+-..|-+.- .-. -.++++=+.|+|+++.|||||- =+.+=+|..+.++-+ ++.+|
T Consensus 68 ~~~~~~gl~~~l~s~~ll~~vi~~LG~iW-ttki~ilP~h~~v~sglfk~~kHPNYflnIipEligl~Ll~~A~~Ta~l~ 146 (172)
T COG1755 68 NWLSIIGLALLLFSQILLYWVIKSLGEIW-TTKIMILPNHQIVRSGLFKTMKHPNYFLNIIPELIGLPLLCQAWYTALLF 146 (172)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhhhh-eeeEEEeCCceeeccccchhccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999998888887777776655 210 0124455899999999999999 667778999888644 45666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043518 231 LVVAALIMTNWALAKHRR 248 (273)
Q Consensus 231 ~~~~~~~m~~~A~~~h~w 248 (273)
...-+.-+..|-++-.+-
T Consensus 147 ~p~ya~~L~vRIr~Eeka 164 (172)
T COG1755 147 SPIYALLLYVRIRQEEKA 164 (172)
T ss_pred HHHHHHHHhhhhhHHHHH
Confidence 666666666665544443
No 19
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=96.64 E-value=0.0017 Score=48.53 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=32.0
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEccc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDL 49 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdl 49 (273)
..++||||+.. .+|+.|+|+++|++||+++++.+.+.++.+
T Consensus 38 i~~~~qrL~~~------~~G~~L~D~~tL~~~gi~~gs~l~l~~~~~ 78 (80)
T cd01792 38 VPAFQQRLAHL------DSREVLQDGVPLVSQGLGPGSTVLLVVQNC 78 (80)
T ss_pred CCHHHEEEEec------cCCCCCCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 56799999754 467789999999999999999544555543
No 20
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=96.63 E-value=0.0017 Score=48.11 Aligned_cols=36 Identities=22% Similarity=0.134 Sum_probs=29.3
Q ss_pred CCCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEE
Q 043518 2 KFYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVV 45 (273)
Q Consensus 2 ~~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~ 45 (273)
++.|+||||... |+.|+|+++|+++|+++|+++.+|
T Consensus 36 ~~~~~~qrLi~~--------Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 36 GTRPEKIVLKKW--------YTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred CCChHHEEEEeC--------CcCCCCCCCHHHcCCCCCCEEEEE
Confidence 367899999854 568999999999999999944444
No 21
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=95.51 E-value=0.012 Score=43.88 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=27.4
Q ss_pred CCCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEE
Q 043518 2 KFYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 2 ~~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~ 46 (273)
++.++||||... |+.|+|+ +|+++|+++++ ++++
T Consensus 36 ~~~~~~qrL~~~--------Gk~L~d~-~L~~~gi~~~~--~i~l 69 (78)
T cd01804 36 KVPKERLALLHR--------ETRLSSG-KLQDLGLGDGS--KLTL 69 (78)
T ss_pred CCChHHEEEEEC--------CcCCCCC-cHHHcCCCCCC--EEEE
Confidence 357899999854 6689888 89999999998 5554
No 22
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=94.73 E-value=0.025 Score=41.35 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=25.7
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCC
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSG 40 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~ 40 (273)
.|+||+|... |+.|+|+++|+++|+++|+
T Consensus 39 ~~~~q~L~~~--------G~~L~d~~~L~~~~i~~~~ 67 (77)
T cd01805 39 PPEQQKLIYS--------GKILKDDTTLEEYKIDEKD 67 (77)
T ss_pred ChhHeEEEEC--------CEEccCCCCHHHcCCCCCC
Confidence 6799999854 7789999999999999998
No 23
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=93.88 E-value=0.049 Score=39.06 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=27.5
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEE
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~ 46 (273)
..|+||+|... |+.|+++++|+++|+++|+ ++.+
T Consensus 35 i~~~~q~L~~~--------g~~l~d~~~L~~~~i~~g~--~l~v 68 (71)
T cd01812 35 VEPRDQKLIFK--------GKERDDAETLDMSGVKDGS--KVML 68 (71)
T ss_pred CChHHeEEeeC--------CcccCccCcHHHcCCCCCC--EEEE
Confidence 46799999853 5578889999999999998 6553
No 24
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=93.87 E-value=0.078 Score=37.80 Aligned_cols=36 Identities=28% Similarity=0.485 Sum_probs=28.4
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEE
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~ 46 (273)
..|++|+|.. +|+.|+|+++|++||+++++.+.+.+
T Consensus 31 ~~~~~~~L~~--------~G~~L~d~~tL~~~~i~~~~~I~l~~ 66 (69)
T PF00240_consen 31 IPPEQQRLIY--------NGKELDDDKTLSDYGIKDGSTIHLVI 66 (69)
T ss_dssp STGGGEEEEE--------TTEEESTTSBTGGGTTSTTEEEEEEE
T ss_pred cccccceeee--------eeecccCcCcHHHcCCCCCCEEEEEE
Confidence 4578999885 47788999999999999998444443
No 25
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=93.48 E-value=0.073 Score=38.52 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=29.7
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEccc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDL 49 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdl 49 (273)
..|++|+|... ++.|+|+++|.++|+++++.+.+.++-.
T Consensus 36 ~~~~~q~L~~~--------g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (76)
T cd01803 36 IPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (76)
T ss_pred CCHHHeEEEEC--------CEECCCCCcHHHcCCCCCCEEEEEEEcc
Confidence 45689999854 5679999999999999998555554433
No 26
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=93.30 E-value=0.086 Score=38.15 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=29.4
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKD 48 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kd 48 (273)
..|++|||... |+.|+++++|++|++++|+.+.+.++.
T Consensus 36 ~~~~~qrL~~~--------g~~L~d~~tl~~~~i~~g~~i~l~~~~ 73 (76)
T cd01806 36 IPPQQQRLIYS--------GKQMNDDKTAADYKLEGGSVLHLVLAL 73 (76)
T ss_pred CChhhEEEEEC--------CeEccCCCCHHHcCCCCCCEEEEEEEc
Confidence 35789999854 567899999999999999955455443
No 27
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=93.23 E-value=0.068 Score=39.93 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=24.6
Q ss_pred ccceeEecCCCCCCCCCccccCcccccccccCCCCC
Q 043518 5 PSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSG 40 (273)
Q Consensus 5 ~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~ 40 (273)
|++|||-.. |+.|+|+++|++||+++++
T Consensus 41 ~dqQrLIy~--------GKiL~D~~TL~dygI~~gs 68 (75)
T cd01815 41 PELIDLIHC--------GRKLKDDQTLDFYGIQSGS 68 (75)
T ss_pred hHHeEEEeC--------CcCCCCCCcHHHcCCCCCC
Confidence 789998754 6679999999999999998
No 28
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=92.60 E-value=0.11 Score=38.03 Aligned_cols=37 Identities=11% Similarity=0.193 Sum_probs=28.2
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFK 47 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~k 47 (273)
..+++|+|.. +|+.|+|+++|+++|+++++.+.+.+.
T Consensus 34 i~~~~q~L~~--------~G~~L~D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01810 34 VQADQFWLSF--------EGRPMEDEHPLGEYGLKPGCTVFMNLR 70 (74)
T ss_pred CCHHHeEEEE--------CCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence 3468899874 577899999999999999984333433
No 29
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=92.20 E-value=0.1 Score=37.75 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=25.1
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEE
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVV 45 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~ 45 (273)
.++||++.. .|+.|+|+++|++||+++++ ++.
T Consensus 36 ~~~~~~Li~--------~Gk~L~d~~tL~~~~i~~~s--tl~ 67 (71)
T cd01808 36 NQEQLVLIF--------AGKILKDTDTLTQHNIKDGL--TVH 67 (71)
T ss_pred CHHHEEEEE--------CCeEcCCCCcHHHcCCCCCC--EEE
Confidence 356777753 46789999999999999998 554
No 30
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=92.02 E-value=0.12 Score=37.02 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=27.0
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEE
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~ 46 (273)
.|++|+|... |+.|+|+++|+++|+++++ ++.+
T Consensus 37 ~~~~q~L~~~--------g~~L~d~~~L~~~~i~~~~--~l~l 69 (72)
T cd01809 37 PVEQQRLIYS--------GRVLKDDETLSEYKVEDGH--TIHL 69 (72)
T ss_pred CHHHeEEEEC--------CEECCCcCcHHHCCCCCCC--EEEE
Confidence 4689999864 6689999999999999998 5543
No 31
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=91.56 E-value=0.17 Score=36.98 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=27.8
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEc
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFK 47 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~k 47 (273)
.++.|+|... |+.|+|+++|++|++++++++.+.+.
T Consensus 35 p~~~q~Li~~--------Gk~L~D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01793 35 DVEDQVLLLA--------GVPLEDDATLGQCGVEELCTLEVAGR 70 (74)
T ss_pred CHHHEEEEEC--------CeECCCCCCHHHcCCCCCCEEEEEEe
Confidence 4688888754 77899999999999999984444433
No 32
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=90.98 E-value=0.19 Score=36.97 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=29.9
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
.|++|+|... |..|+|+++|.+|++.+++.+.+.++-.|
T Consensus 34 p~~~q~L~~~--------G~~L~d~~tL~~~~i~~g~~l~v~~~~~g 72 (76)
T cd01800 34 PAGKQKLQYE--------GIFIKDSNSLAYYNLANGTIIHLQLKERG 72 (76)
T ss_pred CHHHEEEEEC--------CEEcCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 4688999864 56799999999999999995555555444
No 33
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=90.91 E-value=0.17 Score=38.23 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=30.0
Q ss_pred CccceeEecCCCCCCCCCcccc-CcccccccccCCCCCceEEEEcccCCC
Q 043518 4 YPSRQRLTLPLPPGSKQRATAL-DYKKSLKEYSDGNSGNLTVVFKDLGPQ 52 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l-~~~k~l~~~~~~~~~~~~~~~kdlG~q 52 (273)
.|+.|+|.+....+ +.....+ +++++|.+||+++|. +|.|.|..|+
T Consensus 40 ~~~~m~L~l~~~~~-~~~~~~~~dd~~~L~~y~~~dg~--~i~V~D~~p~ 86 (87)
T PF14560_consen 40 PPSDMRLQLKSDKD-DSKIEELDDDDATLGSYGIKDGM--RIHVVDTNPS 86 (87)
T ss_dssp -TTTEEEEEE-TSS-SSEEEESSGSSSBCCHHT-STTE--EEEEEE-T--
T ss_pred CcccEEEEEEecCC-CccccccCCCccEeecCCCCCCC--EEEEEeCCCC
Confidence 47889988762222 1333344 678899999999999 9999998764
No 34
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=90.71 E-value=0.23 Score=34.70 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=28.3
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcc
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKD 48 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kd 48 (273)
.++||++.. +++.|+++++|.++++++++ ++++.+
T Consensus 34 ~~~~~~l~~--------~g~~l~d~~~l~~~~v~~~~--~i~v~~ 68 (69)
T cd01769 34 PPEQQRLIY--------AGKILKDDKTLSDYGIQDGS--TLHLVL 68 (69)
T ss_pred ChHHEEEEE--------CCcCCCCcCCHHHCCCCCCC--EEEEEE
Confidence 468888853 35678999999999999998 787765
No 35
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=90.41 E-value=0.22 Score=36.29 Aligned_cols=30 Identities=23% Similarity=0.142 Sum_probs=25.4
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSG 40 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~ 40 (273)
..+++|+|.. .|+.|+|++++.++++++++
T Consensus 34 i~~~~q~Li~--------~G~~L~D~~~l~~~~i~~~~ 63 (70)
T cd01794 34 VDPCCQRWFF--------SGKLLTDKTRLQETKIQKDY 63 (70)
T ss_pred CCHHHeEEEE--------CCeECCCCCCHHHcCCCCCC
Confidence 3468899875 47789999999999999888
No 36
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=90.16 E-value=0.23 Score=36.61 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=27.6
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEE
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVV 45 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~ 45 (273)
.-|+||+|-.+ .-+|+.++|+++|+++++++|+ ++.
T Consensus 35 vp~~~QKLi~~-----~~~Gk~l~D~~~L~~~~i~~g~--~i~ 70 (74)
T cd01813 35 VLPERQKLLGL-----KVKGKPAEDDVKISALKLKPNT--KIM 70 (74)
T ss_pred CCHHHEEEEee-----cccCCcCCCCcCHHHcCCCCCC--EEE
Confidence 35799998752 0256789999999999999998 544
No 37
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=89.70 E-value=0.25 Score=36.02 Aligned_cols=30 Identities=33% Similarity=0.459 Sum_probs=25.1
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCc
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGN 41 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~ 41 (273)
.+++|+|-. +|+.|+|+++|++||++++++
T Consensus 37 ~~~~q~L~~--------~G~~L~d~~~L~~~~i~~~~~ 66 (74)
T cd01807 37 PEEQQRLLF--------KGKALADDKRLSDYSIGPNAK 66 (74)
T ss_pred CHHHeEEEE--------CCEECCCCCCHHHCCCCCCCE
Confidence 467888874 477899999999999999983
No 38
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=89.68 E-value=0.29 Score=35.21 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=26.3
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEE
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVV 45 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~ 45 (273)
.+++|+|.. +|+.|+|+++++++|+++++ ++.
T Consensus 35 ~~~~q~Li~--------~G~~L~d~~~l~~~~i~~~s--tl~ 66 (70)
T cd01798 35 PPDQLRVIF--------AGKELRNTTTIQECDLGQQS--ILH 66 (70)
T ss_pred CHHHeEEEE--------CCeECCCCCcHHHcCCCCCC--EEE
Confidence 457888874 47789999999999999998 654
No 39
>PTZ00044 ubiquitin; Provisional
Probab=89.68 E-value=0.3 Score=35.55 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=29.6
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
.|+.|||... |+.|+|++++++|++.+++.+.+.++-.|
T Consensus 37 ~~~~q~L~~~--------g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 37 DVKQIRLIYS--------GKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CHHHeEEEEC--------CEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 3578888853 66799999999999999995556555433
No 40
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=89.33 E-value=0.23 Score=34.25 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=24.0
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSG 40 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~ 40 (273)
..|+||+|... |+.|+++++|+++|+++|+
T Consensus 35 ~~~~~~~L~~~--------g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 35 IPVEQQRLIYK--------GKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CCHHHEEEEEC--------CEECCCCCCHHHcCCcCCC
Confidence 34688999854 5678889999999998874
No 41
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=89.20 E-value=0.36 Score=37.98 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=27.8
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEc
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFK 47 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~k 47 (273)
.+++|+|.. .|+.|+|+++|++|++++++++.+.+.
T Consensus 64 p~~~QrLi~--------~Gk~L~D~~tL~dy~I~~~stL~l~~~ 99 (103)
T cd01802 64 PVAQQHLIW--------NNMELEDEYCLNDYNISEGCTLKLVLA 99 (103)
T ss_pred ChHHEEEEE--------CCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 457888874 477899999999999999994444433
No 42
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=88.25 E-value=0.36 Score=35.93 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=25.5
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCce
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNL 42 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~ 42 (273)
.++.|||-. +|+.|+|+.+|++||+++++.+
T Consensus 39 ~~~~QrLi~--------~Gk~L~D~~tL~~y~i~~~~~i 69 (78)
T cd01797 39 EPECQRLFY--------RGKQMEDGHTLFDYNVGLNDII 69 (78)
T ss_pred CHHHeEEEe--------CCEECCCCCCHHHcCCCCCCEE
Confidence 457888874 4778999999999999999833
No 43
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=88.18 E-value=0.46 Score=37.47 Aligned_cols=35 Identities=17% Similarity=0.093 Sum_probs=26.5
Q ss_pred CccceeEecCCCCCCCCCcccc-CcccccccccCCCCCceEEEE
Q 043518 4 YPSRQRLTLPLPPGSKQRATAL-DYKKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l-~~~k~l~~~~~~~~~~~~~~~ 46 (273)
.|++|+|..+ |..| ||+++|++||+.+++.+.|.+
T Consensus 41 ~P~dQkL~~d--------G~~L~DDsrTLssyGv~sgSvl~Lli 76 (107)
T cd01795 41 APFDQNLSID--------GKILSDDCATLGTLGVIPESVILLKA 76 (107)
T ss_pred Ccccceeeec--------CceeccCCccHHhcCCCCCCEEEEEe
Confidence 4788888754 4456 889999999999999444444
No 44
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=88.12 E-value=0.66 Score=34.98 Aligned_cols=44 Identities=20% Similarity=0.143 Sum_probs=31.0
Q ss_pred CccceeEecCCCCCCCCCcccc-CcccccccccCCCCCceEEEEcccCC
Q 043518 4 YPSRQRLTLPLPPGSKQRATAL-DYKKSLKEYSDGNSGNLTVVFKDLGP 51 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l-~~~k~l~~~~~~~~~~~~~~~kdlG~ 51 (273)
.|+.|||.+-...+ .....| +|+++|.+||+++|. ++.+.|.-|
T Consensus 39 ~~~~mrL~l~~~~~--~~~~~l~~d~~~L~~y~~~dg~--~IhVvD~~p 83 (84)
T cd01789 39 PASSMRLQLFDGDD--KLVSKLDDDDALLGSYPVDDGC--RIHVIDVSG 83 (84)
T ss_pred CccceEEEEEcCCC--CeEeecCCCccEeeeccCCCCC--EEEEEeCCC
Confidence 47889986541111 222235 788999999999999 898888654
No 45
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=85.33 E-value=0.69 Score=33.57 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=26.2
Q ss_pred CccceeEecCCCCCCCCCccccCcc-cccccccCCCCCceEEEEc
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYK-KSLKEYSDGNSGNLTVVFK 47 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~-k~l~~~~~~~~~~~~~~~k 47 (273)
.++.|+|.. +|+.|+|+ ++|+++|+++++ ++.+.
T Consensus 36 p~~~q~Li~--------~Gk~L~D~~~~L~~~gi~~~~--~l~l~ 70 (71)
T cd01796 36 PASQQQLIY--------NGRELVDNKRLLALYGVKDGD--LVVLR 70 (71)
T ss_pred CHHHeEEEE--------CCeEccCCcccHHHcCCCCCC--EEEEe
Confidence 457788875 36788776 689999999998 76653
No 46
>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase
Probab=83.42 E-value=7.5 Score=32.98 Aligned_cols=65 Identities=18% Similarity=0.128 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC-Ccc--cccCCccccccccchhHHHHHHHHHHHHh
Q 043518 158 QMKIGFAFGIICQIANFYCHILLKNLRSADGSG-GYQ--IPRGFLFNIVTCANYTTEIYQWLGFNIAT 222 (273)
Q Consensus 158 ~~~~G~~lF~ig~~~n~~~h~~L~~LR~~~g~~-~y~--iP~gglF~~VscPNYf~Eil~w~gf~l~~ 222 (273)
-.+.+.+++++|...|+.+-..|-.-+.-=|+. +.. .=+|.-|++.+.|-|-|+++..+|.++..
T Consensus 65 ppl~~~~L~aiGq~Lv~ss~~~LG~tGTYlGdyFGilm~~VT~FPFnv~~nPmY~GStl~fLg~al~~ 132 (164)
T PLN02797 65 PPLYFWPLFAFGQFLNFRVYQLLGEAGTYYGVRFGKNIPWVTEFPFGVIRDPQYVGSILSLLACLSWV 132 (164)
T ss_pred ChHHHHHHHHHhhHHHHHHHHHhCCceeeehhhhcccccccccCCCCCCCCcchhhHHHHHHHHHHHh
Confidence 356789999999999999988775444211210 111 22789999999999999999999999875
No 47
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.77 E-value=1.1 Score=43.30 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=26.6
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGN 41 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~ 41 (273)
+.++||+|.+ +|+.|+|+++|++|++++++.
T Consensus 39 ip~~~QkLIy--------~GkiL~Dd~tL~dy~I~e~~~ 69 (378)
T TIGR00601 39 YPVAQQKLIY--------SGKILSDDKTVREYKIKEKDF 69 (378)
T ss_pred CChhHeEEEE--------CCEECCCCCcHHHcCCCCCCE
Confidence 5569999985 477999999999999999983
No 48
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=78.01 E-value=2.6 Score=31.80 Aligned_cols=36 Identities=6% Similarity=0.159 Sum_probs=28.0
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEc
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFK 47 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~k 47 (273)
.+++|||..+ |..|++++|+.++++.+++.+.+.++
T Consensus 48 ~~~~~rf~f~--------G~~L~~~~T~~~l~m~d~d~I~v~l~ 83 (87)
T cd01763 48 SMNSVRFLFD--------GQRIRDNQTPDDLGMEDGDEIEVMLE 83 (87)
T ss_pred CccceEEEEC--------CeECCCCCCHHHcCCCCCCEEEEEEe
Confidence 4678888865 67899999999999999994444433
No 49
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=72.13 E-value=2.7 Score=31.64 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=23.4
Q ss_pred CccceeEecCCCCCCCCCccccCccccccccc--CCCCC
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYS--DGNSG 40 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~--~~~~~ 40 (273)
.|+||||=+ +|+.|+|+++|++++ ++++.
T Consensus 42 ~~~~QrLIy--------~GKiLkD~~tL~~~~~~~~~~~ 72 (79)
T cd01790 42 LEQDQRLIY--------SGKLLPDHLKLRDVLRKQDEYH 72 (79)
T ss_pred ChhHeEEEE--------cCeeccchhhHHHHhhcccCCc
Confidence 369999875 477999999999996 77665
No 50
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=70.59 E-value=3.7 Score=30.31 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=22.8
Q ss_pred CccceeEecCCCCCCCCCcccc-CcccccccccCC-CCCceEEE
Q 043518 4 YPSRQRLTLPLPPGSKQRATAL-DYKKSLKEYSDG-NSGNLTVV 45 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l-~~~k~l~~~~~~-~~~~~~~~ 45 (273)
.|++||| .. ++.| +++++|+++|++ +|+ +++
T Consensus 39 p~~~QrL-~~--------G~~L~dD~~tL~~ygi~~~g~--~~~ 71 (75)
T cd01799 39 PPAVQRW-VI--------GQRLARDQETLYSHGIRTNGD--SAF 71 (75)
T ss_pred CHHHEEE-Ec--------CCeeCCCcCCHHHcCCCCCCC--EEE
Confidence 4789999 54 2235 678999999998 666 544
No 51
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=61.96 E-value=4.4 Score=32.72 Aligned_cols=28 Identities=29% Similarity=0.246 Sum_probs=21.6
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCC
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNS 39 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~ 39 (273)
.|+-|||.. ....|+|+|+|.|+|+++.
T Consensus 38 pp~dQrL~k--------d~qvLeD~kTL~d~g~t~~ 65 (119)
T cd01788 38 PPEDQRLYK--------DDQLLDDGKTLGDCGFTSQ 65 (119)
T ss_pred ChhHheeec--------CceeecccccHHHcCcccc
Confidence 478888872 2348999999999999653
No 52
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=59.21 E-value=6 Score=39.31 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=29.7
Q ss_pred ccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEccc
Q 043518 5 PSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDL 49 (273)
Q Consensus 5 ~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdl 49 (273)
++||+|-. .|+.|||+++|+.+|+.||.++.|++|..
T Consensus 52 ~dqlvLIf--------aGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 52 PDQLVLIY--------AGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred hhHeeeee--------cCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 46777654 47789999999999999999666777766
No 53
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=56.42 E-value=7.7 Score=28.59 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=18.3
Q ss_pred CCccccCcccccccccCCCCCceEEEE
Q 043518 20 QRATALDYKKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 20 ~~~~~l~~~k~l~~~~~~~~~~~~~~~ 46 (273)
.+|.+|+.+++|.++|+.+|+ .|.+
T Consensus 54 ~~g~~L~~~~tL~~~gV~dGd--~L~L 78 (79)
T PF08817_consen 54 AGGRPLDPDQTLADAGVRDGD--VLVL 78 (79)
T ss_dssp GGTEEEETTSBCGGGT--TT---EEEE
T ss_pred cCCcccCCcCcHhHcCCCCCC--EEEe
Confidence 467789999999999999998 6653
No 54
>COG4094 Predicted membrane protein [Function unknown]
Probab=56.35 E-value=20 Score=31.80 Aligned_cols=73 Identities=16% Similarity=0.101 Sum_probs=43.5
Q ss_pred cCCccccccccchhHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Q 043518 196 RGFLFNIVTCANYTTEIYQWLGFNIATQ-TVAGYIFLVVAALIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPF 272 (273)
Q Consensus 196 ~gglF~~VscPNYf~Eil~w~gf~l~~~-s~~~~lf~~~~~~~m~~~A~~~h~wY~kkFg~~~~~~~Ypk~RkalIPf 272 (273)
.|+.=+-.+||--.+..+.=+|=.+..+ +.+..+|..+.+--...... ..|+-++++||+ .+-|+.|++++||
T Consensus 100 ~g~Ii~itRHP~l~g~~iWalaHll~nGd~~Svllfggf~l~~~~~~~~-~~rR~r~r~g~a---~~~~~~~ts~~pf 173 (219)
T COG4094 100 EGRIIRITRHPQLLGVVIWALAHLLANGDTFSVLLFGGFLLWAVVGVWS-GDRRARKRYGEA---FVAPVQVTSRIPF 173 (219)
T ss_pred CCceEEEecCchhHHHHHHHHHHhhccCceeeHHHHHHHHHHHHHHhhh-hhhhhhcccCcc---eeeeeccccccch
Confidence 4666678899998887654444444333 22334443333333333333 234448899986 3678888999998
No 55
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=54.43 E-value=10 Score=26.96 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=20.3
Q ss_pred cceeEecCCCCCCCCCccccCcccccccccCCCCC
Q 043518 6 SRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSG 40 (273)
Q Consensus 6 ~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~ 40 (273)
+..+|.. +|+.|+.++|++++|+++++
T Consensus 40 ~~~~l~f--------dG~~L~~~~T~~~~~ied~d 66 (72)
T PF11976_consen 40 ESIRLIF--------DGKRLDPNDTPEDLGIEDGD 66 (72)
T ss_dssp TTEEEEE--------TTEEE-TTSCHHHHT-STTE
T ss_pred ceEEEEE--------CCEEcCCCCCHHHCCCCCCC
Confidence 4556665 47789999999999999998
No 56
>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].
Probab=52.99 E-value=1.6e+02 Score=25.71 Aligned_cols=67 Identities=19% Similarity=0.323 Sum_probs=37.5
Q ss_pred ccccccccchhHHHHHHHHHHHHh-hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Q 043518 199 LFNIVTCANYTTEIYQWLGFNIAT-QTVAG-YIFLVVAALIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPF 272 (273)
Q Consensus 199 lF~~VscPNYf~Eil~w~gf~l~~-~s~~~-~lf~~~~~~~m~~~A~~~h~wY~kkFg~~~~~~~Ypk~RkalIPf 272 (273)
.++.++||=+.+-. .|..--++. ++..+ .+|..+.+.-+......+.| ++ +||++ ++|++ +..+.||
T Consensus 96 i~r~~RHP~l~g~~-lWA~aHLl~nGd~~~~lLFg~~~~~al~~~~~~~rr--~~-~g~~~--~~~~~-~~s~~~~ 164 (191)
T PF07298_consen 96 IYRITRHPMLLGVL-LWALAHLLANGDLASLLLFGGFLAWALIGIILIDRR--RR-FGDAW--RAYPR-RTSIWPF 164 (191)
T ss_pred HHHHhcCchHHHHH-HHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHh--hc-ccccc--ccccC-CCCCCCc
Confidence 88999999999954 575544443 34544 44444444444433333333 55 88653 44555 3355553
No 57
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=44.35 E-value=17 Score=29.29 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=20.7
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSD 36 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~ 36 (273)
+.++.|+|=.. |+.|+|++||+++++
T Consensus 48 ~~~~~qKLIys--------GKiLeD~~TL~d~~~ 73 (113)
T cd01814 48 KTVNEVKLISA--------GKILENSKTVGECRS 73 (113)
T ss_pred CCHHHeEEEeC--------CeecCCCCcHHHhCC
Confidence 34678887653 779999999999994
No 58
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.42 E-value=95 Score=29.59 Aligned_cols=72 Identities=24% Similarity=0.223 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCcccccCCccccccccchhHHHHHHHHHHHHh----hhHHHHHH------HHHHHHH
Q 043518 168 ICQIANFYCHILLKNLRSADGSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIAT----QTVAGYIF------LVVAALI 237 (273)
Q Consensus 168 ig~~~n~~~h~~L~~LR~~~g~~~y~iP~gglF~~VscPNYf~Eil~w~gf~l~~----~s~~~~lf------~~~~~~~ 237 (273)
.+...+=+.|..+.+...++|+.+| .|+-|.++|.|+..|. .+..++.| +-.++..
T Consensus 35 ~sfilkKkgl~r~~~~~~ra~~gg~--------------~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAls 100 (335)
T KOG2922|consen 35 SSFILKKKGLKRAGASGLRAGEGGY--------------GYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALS 100 (335)
T ss_pred eehhhhHHHHHHHhhhcccccCCCc--------------chhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHH
Confidence 4455566777777764433333332 5788999999998775 25555554 3455677
Q ss_pred HHHHHHHHHHHHHHhc
Q 043518 238 MTNWALAKHRRLKKLF 253 (273)
Q Consensus 238 m~~~A~~~h~wY~kkF 253 (273)
....|.-.|.-.+||+
T Consensus 101 vi~saila~~~L~Ekl 116 (335)
T KOG2922|consen 101 VIISAILASFFLKEKL 116 (335)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7778888888777776
No 59
>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]
Probab=38.08 E-value=85 Score=27.13 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC-----CCcccccCCccccccccchhHHHHHHHHHHHHhhhHHHHHHH
Q 043518 157 LQMKIGFAFGIICQIANFYCHILLKNLRSADGS-----GGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFL 231 (273)
Q Consensus 157 ~~~~~G~~lF~ig~~~n~~~h~~L~~LR~~~g~-----~~y~iP~gglF~~VscPNYf~Eil~w~gf~l~~~s~~~~lf~ 231 (273)
...-+|+++|.+|...-..+-..|----.--|+ ++-++ +|.-|+..-.|-|-|-.+.++|++++-+..++.+..
T Consensus 96 ~~~~lg~alfglG~VLVLSSmykLG~~GTyLGDYFGiL~~eRV-tgFPFNv~dNPMY~GSTl~fLg~Al~~gkpaGLllt 174 (208)
T KOG4142|consen 96 AAYSLGLALFGLGVVLVLSSMYKLGFAGTYLGDYFGILKEERV-TGFPFNVLDNPMYWGSTLNFLGWALMHGKPAGLLLT 174 (208)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhhhhhhhhhhc-ccccccccCCcccccchHHHHHHHHHcCCcchhHHH
Confidence 355689999999988665554433210000011 11112 788899999999999999999999998777666555
Q ss_pred HHHH
Q 043518 232 VVAA 235 (273)
Q Consensus 232 ~~~~ 235 (273)
+.++
T Consensus 175 ~~V~ 178 (208)
T KOG4142|consen 175 VLVA 178 (208)
T ss_pred HHHH
Confidence 4433
No 60
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=37.68 E-value=13 Score=29.25 Aligned_cols=30 Identities=23% Similarity=0.151 Sum_probs=22.6
Q ss_pred ccceeEecCCCCCCCCCccccCcccccccccCCCCC
Q 043518 5 PSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSG 40 (273)
Q Consensus 5 ~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~ 40 (273)
++-|||... .....|+|+|+|.|.|.++..
T Consensus 39 vn~qrL~km------d~eqlL~D~ktL~d~gfts~~ 68 (110)
T KOG4495|consen 39 VNEQRLYKM------DTEQLLDDGKTLGDCGFTSQT 68 (110)
T ss_pred Ccchheeec------CHHHHhhccchhhhccccccc
Confidence 577888765 233588999999999887653
No 61
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=37.59 E-value=33 Score=25.71 Aligned_cols=32 Identities=31% Similarity=0.391 Sum_probs=24.7
Q ss_pred cceeEecCCCCCCCCCccccCcccccccccCCCCC
Q 043518 6 SRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSG 40 (273)
Q Consensus 6 ~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~ 40 (273)
--|||...+|.| +...|.+.++|.+||+-++.
T Consensus 38 g~qrLsfQepgg---~rqlL~s~~sLA~yGiFs~~ 69 (80)
T cd01811 38 GLQRLSFQEPGG---ERQLLSSRKSLADYGIFSKT 69 (80)
T ss_pred cceEEEeecCCc---ccccccccccHhhhcceecc
Confidence 357888875544 56688999999999998776
No 62
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=34.70 E-value=3.8e+02 Score=26.06 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccccCC
Q 043518 161 IGFAFGIICQIANFYCHILLKNLRSADGSGGYQIPRGF 198 (273)
Q Consensus 161 ~G~~lF~ig~~~n~~~h~~L~~LR~~~g~~~y~iP~gg 198 (273)
++...+.+..+.-..++..+|.-| ++.++.|++|.|.
T Consensus 363 ~~~~~~~i~y~~~~~a~i~lr~~~-~~~~rpf~~p~g~ 399 (474)
T TIGR03813 363 LTVILYLVMYLLMFASAIYLRYSQ-PDRPRPYRIPGGL 399 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCeEecCCc
Confidence 334445555666666777776433 3344568887653
No 63
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=33.19 E-value=30 Score=25.22 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=21.7
Q ss_pred CCCccccCcccccccccCCCCCceEEEE
Q 043518 19 KQRATALDYKKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 19 ~~~~~~l~~~k~l~~~~~~~~~~~~~~~ 46 (273)
|..|..+|-+|..+|+|..++. +++.
T Consensus 43 De~G~vlD~~kKveD~Gftngv--kLFL 68 (76)
T PF10790_consen 43 DESGQVLDVNKKVEDFGFTNGV--KLFL 68 (76)
T ss_pred ccCCcEeeccchhhhccccccc--eEEE
Confidence 4678899999999999999987 6553
No 64
>PF15584 Imm44: Immunity protein 44
Probab=32.83 E-value=21 Score=27.76 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=15.5
Q ss_pred CCcccccCCccc---------cccccchhH
Q 043518 190 GGYQIPRGFLFN---------IVTCANYTT 210 (273)
Q Consensus 190 ~~y~iP~gglF~---------~VscPNYf~ 210 (273)
++.+||-.|.|+ ++-|||||-
T Consensus 21 SG~~iP~~GIwEPv~~~~~K~~~gc~NYf~ 50 (94)
T PF15584_consen 21 SGQEIPCDGIWEPVDAPKPKLNVGCPNYFL 50 (94)
T ss_pred cCCCcccCCeEccccCCCCccccCcchhhc
Confidence 456788777776 457999984
No 65
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=31.53 E-value=37 Score=25.31 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=10.8
Q ss_pred CcccccccccCCCCCceEEEEcc
Q 043518 26 DYKKSLKEYSDGNSGNLTVVFKD 48 (273)
Q Consensus 26 ~~~k~l~~~~~~~~~~~~~~~kd 48 (273)
+++++++++|++.|+ -||++-
T Consensus 59 ~~~~tl~~lglkHGd--mlyL~~ 79 (80)
T PF11543_consen 59 SDSKTLSSLGLKHGD--MLYLKP 79 (80)
T ss_dssp -TT-CCCCT---TT---EEE---
T ss_pred CCcCCHHHcCCCCcc--EEEEec
Confidence 568899999999999 788763
No 66
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=30.96 E-value=30 Score=29.39 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=19.9
Q ss_pred ccccCcccccccccCCCCCceEEEEc
Q 043518 22 ATALDYKKSLKEYSDGNSGNLTVVFK 47 (273)
Q Consensus 22 ~~~l~~~k~l~~~~~~~~~~~~~~~k 47 (273)
++.|.|+.+|+||++...+++.+.+.
T Consensus 47 g~qLedgrtlSDY~Iqkestl~l~l~ 72 (156)
T KOG0004|consen 47 GKQLEDGRTLSDYNIQKESTLHLVLR 72 (156)
T ss_pred hcccccCCccccccccccceEEEEEE
Confidence 56788899999999988874444443
No 67
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=30.33 E-value=3.2e+02 Score=25.37 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHHHHhh----hHHHHHH------HHHHHHHHHHHHHHHHHHHHHhcC
Q 043518 207 NYTTEIYQWLGFNIATQ----TVAGYIF------LVVAALIMTNWALAKHRRLKKLFD 254 (273)
Q Consensus 207 NYf~Eil~w~gf~l~~~----s~~~~lf------~~~~~~~m~~~A~~~h~wY~kkFg 254 (273)
.|+-+-++|+|+.++.- +..++.| .-.+...+...+.-.|...+++++
T Consensus 46 ~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~ 103 (300)
T PF05653_consen 46 SYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLT 103 (300)
T ss_pred HHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccch
Confidence 78888999999987652 3333322 223445555566666777666663
No 68
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=29.10 E-value=41 Score=32.00 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=26.1
Q ss_pred ccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEE-cc
Q 043518 5 PSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVF-KD 48 (273)
Q Consensus 5 ~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~-kd 48 (273)
.++|.|-+ +|+.|+|++++.+|++++++-+++.+ ||
T Consensus 40 ~~~QkLIy--------~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 40 AEQQKLIY--------SGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred hhhheeee--------cceeccCCcchhhhccccCceEEEEEecC
Confidence 36666653 57899999999999999987333333 44
No 69
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=24.55 E-value=38 Score=25.53 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=14.8
Q ss_pred CCccccCcccccccccCCCCCceEEEEcccC
Q 043518 20 QRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 20 ~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
..+.+|+-+|+|+|+|++ +||..|--
T Consensus 21 ~s~e~LdLsKSLndlGir-----ELYA~D~~ 46 (79)
T PF09469_consen 21 QSGEELDLSKSLNDLGIR-----ELYAWDTS 46 (79)
T ss_dssp S---B--TTS-HHHHT-S-----EEEEEE--
T ss_pred CCCCcccccccHHHhhHH-----HHHhhccc
Confidence 345688999999999996 89988743
No 70
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=23.08 E-value=14 Score=29.63 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=27.5
Q ss_pred CccccCcccccccccCCCCCceEEEEcccCCCCch
Q 043518 21 RATALDYKKSLKEYSDGNSGNLTVVFKDLGPQVSY 55 (273)
Q Consensus 21 ~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG~qi~~ 55 (273)
+++.|.|+.|+.+||+...++++++.|=+|--|+-
T Consensus 46 ~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~i~~ 80 (128)
T KOG0003|consen 46 AGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (128)
T ss_pred cccccccCCcccccCccchhhhhhhHHHhcCCCCh
Confidence 45678899999999998777677888888876653
No 71
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=20.63 E-value=68 Score=24.16 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=18.0
Q ss_pred CcccccccccCCCCCceEEEEccc
Q 043518 26 DYKKSLKEYSDGNSGNLTVVFKDL 49 (273)
Q Consensus 26 ~~~k~l~~~~~~~~~~~~~~~kdl 49 (273)
+.++||+|.|+.... .|.|.|+
T Consensus 64 ~~~~TL~eaGL~~s~--~L~V~d~ 85 (85)
T cd01774 64 PPPPTLLEAGLSNSE--VLFVQDL 85 (85)
T ss_pred cCCCCHHHcCCCCcc--EEEEecC
Confidence 347799999999877 8888875
No 72
>PF13789 DUF4181: Domain of unknown function (DUF4181)
Probab=20.13 E-value=2.5e+02 Score=22.01 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=14.5
Q ss_pred cccccCCccccccccchhHHHHHHH
Q 043518 192 YQIPRGFLFNIVTCANYTTEIYQWL 216 (273)
Q Consensus 192 y~iP~gglF~~VscPNYf~Eil~w~ 216 (273)
..||+.++|+| .+=|-+-+.++|.
T Consensus 14 l~i~k~~~~~~-~~vn~~h~~~e~~ 37 (110)
T PF13789_consen 14 LNIPKKKFFSY-KHVNKLHKKGEWI 37 (110)
T ss_pred cCCCCCcCCCC-CchhHHHHHHHHH
Confidence 46888888855 4555555554444
Done!